BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039120
         (750 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V3T|A Chain A, Crystal Structure Of Clostridium Botulinum Phage C-St Tubz
          Length = 360

 Score = 31.2 bits (69), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 345 TWKTDVMAVQGLGLVNPKNVYKFYNELHGYLASAGIDGVKVDVQCILETLGAGLGGRVEL 404
           T   DV A++ + +  P+  +K YN     + + GI+  K  VQ + E +   +  R E+
Sbjct: 253 TRVVDVEAIKSI-VGYPRRTFKGYNSKKNIVVATGIEPQKTTVQMMNEIIEDKMKQRREV 311

Query: 405 TRQYHQALDASVARNFPDNGCI 426
           T +    +   +A +  DN  +
Sbjct: 312 TSKSENMIIEPIALDDEDNKSV 333


>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
           Mortierella Vinacea
          Length = 397

 Score = 29.6 bits (65), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 199 GIVDYFGWCTWDAFYQEVTQEGVEAGLESLAKGGTPP---KFVIIDDGWQ 245
            I    GW TW+ +   V ++ +    +++A  G       +VIIDD WQ
Sbjct: 6   AITPQMGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQ 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,900,092
Number of Sequences: 62578
Number of extensions: 1065183
Number of successful extensions: 2309
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2309
Number of HSP's gapped (non-prelim): 5
length of query: 750
length of database: 14,973,337
effective HSP length: 106
effective length of query: 644
effective length of database: 8,340,069
effective search space: 5371004436
effective search space used: 5371004436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)