Query 039121
Match_columns 232
No_of_seqs 262 out of 2248
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1559 Gamma-glutamyl hydrola 100.0 9.9E-46 2.1E-50 317.9 15.9 219 6-228 4-223 (340)
2 cd01747 GATase1_Glutamyl_Hydro 100.0 1.2E-30 2.6E-35 231.9 14.1 165 60-228 1-167 (273)
3 PF07722 Peptidase_C26: Peptid 100.0 1.5E-28 3.3E-33 211.7 10.3 159 58-228 1-181 (217)
4 COG2071 Predicted glutamine am 99.9 2.2E-25 4.8E-30 192.5 9.2 117 55-173 1-128 (243)
5 PRK11366 puuD gamma-glutamyl-g 99.9 4.6E-21 9.9E-26 168.9 11.7 114 54-173 4-128 (254)
6 PRK06895 putative anthranilate 99.7 8.1E-18 1.8E-22 141.8 10.9 124 80-227 11-134 (190)
7 TIGR00888 guaA_Nterm GMP synth 99.7 1.6E-17 3.5E-22 139.5 11.6 120 85-227 12-131 (188)
8 PRK08007 para-aminobenzoate sy 99.7 2.2E-17 4.7E-22 139.2 11.4 125 79-227 8-133 (187)
9 TIGR00566 trpG_papA glutamine 99.7 4.2E-17 9E-22 137.5 12.4 125 79-227 8-133 (188)
10 PRK07765 para-aminobenzoate sy 99.7 4.2E-17 9.1E-22 140.3 12.2 124 84-227 13-137 (214)
11 cd01745 GATase1_2 Subgroup of 99.7 2.3E-17 5E-22 139.1 9.9 105 60-173 1-121 (189)
12 PRK06774 para-aminobenzoate sy 99.7 3.5E-17 7.6E-22 138.0 10.7 125 79-227 8-133 (191)
13 cd01743 GATase1_Anthranilate_S 99.7 8E-17 1.7E-21 134.7 12.4 125 80-227 8-132 (184)
14 COG0118 HisH Glutamine amidotr 99.7 9.6E-18 2.1E-22 141.8 6.7 122 84-228 14-153 (204)
15 cd01742 GATase1_GMP_Synthase T 99.7 4.9E-17 1.1E-21 135.2 9.7 119 85-226 12-130 (181)
16 PF00117 GATase: Glutamine ami 99.7 6.9E-17 1.5E-21 135.2 10.0 131 79-228 6-136 (192)
17 PRK05670 anthranilate synthase 99.7 1E-16 2.3E-21 134.8 10.8 124 80-227 9-133 (189)
18 COG0512 PabA Anthranilate/para 99.7 1.4E-16 3.1E-21 133.9 10.6 126 79-228 10-136 (191)
19 PRK07649 para-aminobenzoate/an 99.7 1.7E-16 3.6E-21 134.8 10.9 125 79-227 8-133 (195)
20 PLN02335 anthranilate synthase 99.7 2.1E-16 4.6E-21 136.7 11.0 125 84-228 31-157 (222)
21 PRK08857 para-aminobenzoate sy 99.7 4.5E-16 9.7E-21 131.6 11.8 125 79-227 8-133 (193)
22 PRK05637 anthranilate synthase 99.7 4.6E-16 1E-20 133.4 11.6 134 80-226 11-148 (208)
23 CHL00101 trpG anthranilate syn 99.7 4.5E-16 9.7E-21 131.4 10.3 124 80-227 9-133 (190)
24 cd01744 GATase1_CPSase Small c 99.7 1E-15 2.2E-20 127.8 11.9 80 86-173 11-90 (178)
25 PRK00758 GMP synthase subunit 99.6 4.9E-16 1.1E-20 130.0 9.2 114 85-226 13-127 (184)
26 cd01741 GATase1_1 Subgroup of 99.6 7.3E-16 1.6E-20 128.9 9.9 127 84-227 13-146 (188)
27 PRK09065 glutamine amidotransf 99.6 1.6E-15 3.5E-20 132.3 10.6 124 86-226 26-152 (237)
28 TIGR01368 CPSaseIIsmall carbam 99.6 1.9E-15 4.1E-20 139.1 11.5 96 85-190 185-280 (358)
29 PRK12564 carbamoyl phosphate s 99.6 2.3E-15 4.9E-20 138.8 11.9 98 84-190 188-285 (360)
30 PLN02347 GMP synthetase 99.6 3.3E-15 7.1E-20 144.0 12.5 124 85-227 24-149 (536)
31 PRK13566 anthranilate synthase 99.6 4.2E-15 9E-20 147.4 11.3 122 84-227 539-660 (720)
32 PRK07567 glutamine amidotransf 99.6 5.9E-15 1.3E-19 129.2 10.5 129 85-226 18-156 (242)
33 COG0518 GuaA GMP synthase - Gl 99.6 6.1E-15 1.3E-19 125.7 9.9 118 85-214 15-137 (198)
34 TIGR01815 TrpE-clade3 anthrani 99.6 1.3E-14 2.7E-19 143.9 13.5 137 55-227 514-650 (717)
35 PRK00074 guaA GMP synthase; Re 99.6 1.1E-14 2.4E-19 139.7 12.2 118 85-227 17-136 (511)
36 COG0505 CarA Carbamoylphosphat 99.6 8E-15 1.7E-19 133.1 9.1 97 83-188 189-285 (368)
37 PRK13170 hisH imidazole glycer 99.6 3.4E-15 7.4E-20 126.7 6.2 119 85-227 14-148 (196)
38 PRK12838 carbamoyl phosphate s 99.6 1.7E-14 3.7E-19 132.7 11.2 97 84-190 178-274 (354)
39 PRK13152 hisH imidazole glycer 99.6 5.7E-15 1.2E-19 125.6 7.5 120 85-228 13-153 (201)
40 PLN02771 carbamoyl-phosphate s 99.6 1.6E-14 3.5E-19 134.7 10.5 97 84-190 251-347 (415)
41 PRK13146 hisH imidazole glycer 99.5 5.4E-15 1.2E-19 126.7 6.1 121 85-227 15-157 (209)
42 PRK07053 glutamine amidotransf 99.5 8.2E-14 1.8E-18 121.5 13.1 123 86-226 18-145 (234)
43 CHL00197 carA carbamoyl-phosph 99.5 2.9E-14 6.4E-19 132.2 10.5 82 85-174 204-285 (382)
44 PRK06490 glutamine amidotransf 99.5 5E-14 1.1E-18 123.2 10.1 101 85-192 22-126 (239)
45 PRK08250 glutamine amidotransf 99.5 1.2E-13 2.6E-18 120.4 11.1 123 86-225 16-146 (235)
46 PRK14607 bifunctional glutamin 99.5 7.8E-14 1.7E-18 134.6 10.6 125 79-227 8-134 (534)
47 CHL00188 hisH imidazole glycer 99.5 6.4E-14 1.4E-18 120.4 7.9 123 85-227 15-158 (210)
48 PRK05665 amidotransferase; Pro 99.5 1.6E-13 3.5E-18 120.1 10.2 120 87-226 28-152 (240)
49 cd01748 GATase1_IGP_Synthase T 99.5 8.8E-14 1.9E-18 117.7 6.5 119 85-227 12-150 (198)
50 PLN02889 oxo-acid-lyase/anthra 99.4 7.5E-13 1.6E-17 133.5 12.1 133 79-227 90-227 (918)
51 cd01746 GATase1_CTP_Synthase T 99.4 4.2E-13 9.2E-18 117.1 9.0 102 58-173 1-105 (235)
52 PRK13181 hisH imidazole glycer 99.4 2.1E-13 4.7E-18 115.6 6.8 120 85-228 13-150 (199)
53 PRK09522 bifunctional glutamin 99.4 6.5E-13 1.4E-17 128.1 10.6 126 79-226 10-137 (531)
54 PRK13525 glutamine amidotransf 99.4 4.7E-13 1E-17 113.0 7.7 88 58-172 2-92 (189)
55 PRK13142 hisH imidazole glycer 99.4 3.5E-13 7.5E-18 114.4 6.6 74 85-169 13-87 (192)
56 PRK14004 hisH imidazole glycer 99.4 8.6E-13 1.9E-17 113.4 9.1 120 85-226 13-157 (210)
57 PRK13527 glutamine amidotransf 99.4 2.5E-12 5.5E-17 109.2 10.9 93 59-172 2-97 (200)
58 TIGR01823 PabB-fungal aminodeo 99.4 3.6E-12 7.8E-17 127.2 12.9 126 84-227 18-146 (742)
59 PRK13143 hisH imidazole glycer 99.4 1.8E-12 4E-17 110.1 7.8 118 85-227 14-147 (200)
60 PRK13141 hisH imidazole glycer 99.4 1E-12 2.2E-17 111.8 6.1 118 85-227 13-151 (205)
61 TIGR01855 IMP_synth_hisH imida 99.3 1.9E-12 4.2E-17 109.7 6.8 119 85-227 12-147 (196)
62 PLN02832 glutamine amidotransf 99.3 1.1E-11 2.5E-16 108.9 8.8 84 59-169 3-89 (248)
63 TIGR01737 FGAM_synth_I phospho 99.3 1.1E-10 2.3E-15 101.3 13.6 91 59-173 2-101 (227)
64 TIGR00337 PyrG CTP synthase. C 99.2 6.7E-11 1.4E-15 113.3 9.6 98 56-173 288-393 (525)
65 PRK06186 hypothetical protein; 99.2 1.1E-10 2.3E-15 101.6 9.5 97 59-173 3-103 (229)
66 PRK01175 phosphoribosylformylg 99.1 2.2E-10 4.7E-15 101.6 9.7 95 55-168 1-105 (261)
67 PLN02617 imidazole glycerol ph 99.1 2.6E-10 5.7E-15 110.2 10.4 118 85-227 20-157 (538)
68 PRK05380 pyrG CTP synthetase; 99.1 2.8E-10 6E-15 109.2 10.3 99 57-173 288-393 (533)
69 cd01749 GATase1_PB Glutamine A 99.1 1E-10 2.3E-15 98.1 5.2 86 60-172 1-89 (183)
70 cd01740 GATase1_FGAR_AT Type 1 99.1 6.2E-10 1.3E-14 97.2 9.7 95 60-173 1-105 (238)
71 KOG0026 Anthranilate synthase, 99.1 6E-10 1.3E-14 92.0 8.6 122 86-227 33-157 (223)
72 COG0047 PurL Phosphoribosylfor 99.1 5.8E-10 1.3E-14 96.1 8.7 88 56-168 1-97 (231)
73 PRK13526 glutamine amidotransf 99.0 5.8E-10 1.3E-14 93.6 6.2 83 58-168 3-88 (179)
74 TIGR03800 PLP_synth_Pdx2 pyrid 99.0 8.2E-10 1.8E-14 93.0 7.1 84 60-170 2-88 (184)
75 KOG1622 GMP synthase [Nucleoti 99.0 1.6E-10 3.5E-15 107.6 3.0 109 78-209 27-139 (552)
76 KOG0370 Multifunctional pyrimi 99.0 1.7E-09 3.8E-14 107.8 9.1 80 84-174 183-262 (1435)
77 KOG1224 Para-aminobenzoate (PA 99.0 4.1E-09 9E-14 100.1 11.1 134 79-228 23-161 (767)
78 PRK03619 phosphoribosylformylg 99.0 1.1E-08 2.3E-13 88.5 12.3 91 59-173 2-102 (219)
79 PLN02327 CTP synthase 98.9 1.1E-08 2.5E-13 98.5 10.5 99 57-173 297-412 (557)
80 KOG3179 Predicted glutamine sy 98.9 1.2E-08 2.5E-13 86.9 9.1 114 86-208 29-148 (245)
81 COG0504 PyrG CTP synthase (UTP 98.8 2.8E-08 6.1E-13 93.9 9.2 98 58-173 289-393 (533)
82 PRK05368 homoserine O-succinyl 98.7 4.9E-08 1.1E-12 88.2 8.5 86 115-209 98-188 (302)
83 cd01750 GATase1_CobQ Type 1 gl 98.7 3.4E-08 7.3E-13 83.7 6.8 73 85-169 13-89 (194)
84 cd03130 GATase1_CobB Type 1 gl 98.7 4.1E-08 8.8E-13 83.5 6.9 78 82-169 11-92 (198)
85 PF13507 GATase_5: CobB/CobQ-l 98.7 1.4E-08 3E-13 90.0 3.4 93 57-168 1-106 (259)
86 KOG0623 Glutamine amidotransfe 98.5 2.7E-07 5.9E-12 84.1 7.6 119 85-224 15-148 (541)
87 COG0311 PDX2 Predicted glutami 98.5 2.1E-07 4.6E-12 78.1 4.7 85 59-170 2-90 (194)
88 TIGR01857 FGAM-synthase phosph 98.4 1.1E-06 2.3E-11 91.9 10.3 96 55-168 975-1090(1239)
89 KOG2387 CTP synthase (UTP-ammo 98.4 1.4E-06 2.9E-11 81.7 9.3 98 58-173 299-413 (585)
90 cd03131 GATase1_HTS Type 1 glu 98.4 8.6E-07 1.9E-11 74.4 7.0 85 114-208 60-149 (175)
91 PRK06278 cobyrinic acid a,c-di 98.4 6.4E-07 1.4E-11 85.7 6.5 72 86-169 10-82 (476)
92 PLN03206 phosphoribosylformylg 98.4 1.8E-06 3.9E-11 90.8 10.3 96 54-168 1034-1142(1307)
93 TIGR01735 FGAM_synt phosphorib 98.3 3.6E-06 7.8E-11 88.8 9.6 94 55-167 1053-1159(1310)
94 PRK05297 phosphoribosylformylg 98.2 5.7E-06 1.2E-10 87.4 10.0 94 56-168 1034-1140(1290)
95 PF01174 SNO: SNO glutamine am 98.2 8.2E-07 1.8E-11 74.9 2.8 74 86-170 10-86 (188)
96 cd03146 GAT1_Peptidase_E Type 98.2 5.8E-06 1.2E-10 70.9 7.2 95 56-168 30-130 (212)
97 cd01653 GATase1 Type 1 glutami 98.1 9.8E-06 2.1E-10 58.6 6.5 76 85-165 15-92 (115)
98 PRK01077 cobyrinic acid a,c-di 98.1 1.4E-05 3.1E-10 75.9 9.1 91 57-169 245-339 (451)
99 PRK00784 cobyric acid synthase 98.1 6.4E-06 1.4E-10 79.0 6.1 72 86-169 266-342 (488)
100 TIGR01739 tegu_FGAM_synt herpe 97.9 5E-05 1.1E-09 79.9 10.2 94 55-168 927-1034(1202)
101 TIGR00379 cobB cobyrinic acid 97.9 2.8E-05 6E-10 74.0 7.5 91 57-169 244-338 (449)
102 cd03128 GAT_1 Type 1 glutamine 97.9 2.9E-05 6.3E-10 53.6 5.5 75 86-165 16-92 (92)
103 KOG3210 Imidazoleglycerol-phos 97.9 3.9E-05 8.5E-10 63.9 6.7 92 57-172 11-111 (226)
104 PHA03366 FGAM-synthase; Provis 97.9 4.9E-05 1.1E-09 80.5 9.0 94 55-168 1026-1133(1304)
105 PF07685 GATase_3: CobB/CobQ-l 97.7 3.6E-05 7.8E-10 63.1 3.2 52 114-170 5-60 (158)
106 PRK13896 cobyrinic acid a,c-di 97.6 7.5E-05 1.6E-09 70.8 5.1 87 58-169 234-325 (433)
107 TIGR00313 cobQ cobyric acid sy 97.4 0.00024 5.2E-09 68.1 5.5 51 114-169 282-336 (475)
108 PRK05282 (alpha)-aspartyl dipe 97.3 0.0011 2.4E-08 58.1 7.9 99 56-170 30-131 (233)
109 PRK11780 isoprenoid biosynthes 97.1 0.0027 5.8E-08 54.9 8.5 52 114-170 83-146 (217)
110 cd03129 GAT1_Peptidase_E_like 97.1 0.0029 6.3E-08 53.9 8.6 98 57-168 29-130 (210)
111 cd03144 GATase1_ScBLP_like Typ 97.1 0.00022 4.8E-09 55.9 1.2 46 115-165 43-90 (114)
112 cd03133 GATase1_ES1 Type 1 glu 97.0 0.003 6.4E-08 54.6 8.2 54 114-172 80-146 (213)
113 TIGR01382 PfpI intracellular p 96.9 0.0065 1.4E-07 49.2 8.5 78 86-168 17-108 (166)
114 cd03147 GATase1_Ydr533c_like T 96.7 0.0067 1.4E-07 52.9 7.6 49 115-168 93-143 (231)
115 PF04204 HTS: Homoserine O-suc 96.7 0.0028 6.1E-08 57.4 5.2 84 115-208 97-186 (298)
116 cd03169 GATase1_PfpI_1 Type 1 96.6 0.003 6.5E-08 52.2 4.4 48 116-168 76-124 (180)
117 PRK04155 chaperone protein Hch 96.6 0.032 6.9E-07 50.3 11.3 49 115-168 146-196 (287)
118 cd03134 GATase1_PfpI_like A ty 96.6 0.011 2.4E-07 47.8 7.5 78 86-168 17-110 (165)
119 TIGR01001 metA homoserine O-su 96.5 0.013 2.8E-07 53.0 8.3 52 115-171 98-154 (300)
120 cd03148 GATase1_EcHsp31_like T 96.3 0.017 3.7E-07 50.4 7.7 49 115-168 95-145 (232)
121 cd03132 GATase1_catalase Type 96.2 0.032 6.8E-07 44.2 8.0 94 59-168 3-111 (142)
122 cd03137 GATase1_AraC_1 AraC tr 96.1 0.026 5.5E-07 46.6 7.5 50 114-168 62-112 (187)
123 COG1492 CobQ Cobyric acid synt 96.1 0.0073 1.6E-07 57.9 4.6 62 95-169 276-342 (486)
124 COG3442 Predicted glutamine am 96.1 0.0038 8.2E-08 54.2 2.3 72 90-169 29-104 (250)
125 cd03140 GATase1_PfpI_3 Type 1 95.8 0.027 5.9E-07 46.1 6.1 49 115-168 59-107 (170)
126 PRK11574 oxidative-stress-resi 95.3 0.23 5E-06 41.4 10.2 96 56-167 1-114 (196)
127 PF01965 DJ-1_PfpI: DJ-1/PfpI 95.2 0.0076 1.6E-07 48.3 0.8 49 115-168 36-87 (147)
128 COG0693 ThiJ Putative intracel 95.0 0.03 6.5E-07 46.4 4.0 77 87-168 21-115 (188)
129 TIGR02069 cyanophycinase cyano 94.6 0.19 4E-06 44.4 8.2 97 57-168 28-132 (250)
130 cd03139 GATase1_PfpI_2 Type 1 94.6 0.1 2.2E-06 42.7 6.2 49 115-168 61-110 (183)
131 cd03145 GAT1_cyanophycinase Ty 94.6 0.21 4.5E-06 43.0 8.2 95 57-168 29-133 (217)
132 cd03138 GATase1_AraC_2 AraC tr 94.3 0.11 2.4E-06 43.1 5.9 50 114-168 67-120 (195)
133 cd03141 GATase1_Hsp31_like Typ 94.3 0.065 1.4E-06 46.1 4.6 49 115-168 89-139 (221)
134 PF03575 Peptidase_S51: Peptid 94.3 0.12 2.5E-06 41.9 5.8 73 85-164 3-81 (154)
135 cd03135 GATase1_DJ-1 Type 1 gl 94.2 0.056 1.2E-06 43.2 3.8 49 115-168 59-109 (163)
136 COG1897 MetA Homoserine trans- 94.2 0.13 2.8E-06 45.8 6.1 53 115-172 98-155 (307)
137 cd03136 GATase1_AraC_ArgR_like 93.9 0.12 2.7E-06 42.6 5.3 50 114-168 62-111 (185)
138 KOG1907 Phosphoribosylformylgl 93.8 0.13 2.7E-06 52.8 6.0 96 55-168 1056-1163(1320)
139 PRK11249 katE hydroperoxidase 93.3 0.39 8.4E-06 48.8 8.5 97 56-168 596-707 (752)
140 COG1797 CobB Cobyrinic acid a, 92.6 0.2 4.4E-06 47.6 5.2 88 58-169 246-340 (451)
141 TIGR01383 not_thiJ DJ-1 family 92.6 0.13 2.9E-06 41.9 3.5 50 114-168 61-112 (179)
142 PRK09393 ftrA transcriptional 92.5 0.34 7.3E-06 43.7 6.4 50 114-168 73-122 (322)
143 PF13278 DUF4066: Putative ami 91.6 0.16 3.4E-06 41.2 2.7 50 114-168 59-109 (166)
144 COG3340 PepE Peptidase E [Amin 91.1 0.79 1.7E-05 39.8 6.7 92 57-163 32-129 (224)
145 PRK03372 ppnK inorganic polyph 90.5 0.8 1.7E-05 41.7 6.6 82 59-161 7-105 (306)
146 KOG2764 Putative transcription 90.3 0.65 1.4E-05 40.8 5.5 46 115-168 66-115 (247)
147 PRK04539 ppnK inorganic polyph 88.1 1.7 3.7E-05 39.3 6.9 83 59-162 7-102 (296)
148 PRK01215 competence damage-ind 87.4 3.2 6.9E-05 37.0 8.0 69 55-128 1-74 (264)
149 PRK01911 ppnK inorganic polyph 87.3 1.6 3.5E-05 39.5 6.2 82 60-162 3-98 (292)
150 TIGR02667 moaB_proteo molybden 87.3 4.3 9.3E-05 33.4 8.2 67 56-129 3-76 (163)
151 TIGR00177 molyb_syn molybdenum 87.0 7.4 0.00016 31.1 9.3 46 84-129 29-79 (144)
152 PRK02649 ppnK inorganic polyph 86.4 2 4.2E-05 39.2 6.3 82 59-161 3-101 (305)
153 PRK03378 ppnK inorganic polyph 86.4 1.9 4.2E-05 38.9 6.1 84 58-162 6-97 (292)
154 PF09825 BPL_N: Biotin-protein 84.3 2.8 6.1E-05 39.2 6.3 50 113-167 46-97 (367)
155 COG0303 MoeA Molybdopterin bio 84.2 6.2 0.00013 37.4 8.7 102 26-128 146-254 (404)
156 PRK14077 pnk inorganic polypho 84.2 2.7 5.8E-05 38.0 6.0 82 59-162 12-98 (287)
157 PRK13016 dihydroxy-acid dehydr 84.0 6.3 0.00014 39.0 8.8 56 43-102 28-83 (577)
158 PRK10680 molybdopterin biosynt 83.8 7.1 0.00015 37.0 8.9 89 41-129 161-256 (411)
159 PRK14690 molybdopterin biosynt 83.7 7.3 0.00016 37.0 9.0 88 41-128 177-271 (419)
160 cd00887 MoeA MoeA family. Memb 83.2 7.7 0.00017 36.3 8.9 89 41-129 152-247 (394)
161 PF03358 FMN_red: NADPH-depend 82.2 3 6.6E-05 32.9 5.1 93 59-160 3-114 (152)
162 PRK14497 putative molybdopteri 81.9 7.9 0.00017 38.1 8.6 102 26-128 149-257 (546)
163 PRK02155 ppnK NAD(+)/NADH kina 81.8 4.5 9.7E-05 36.5 6.5 83 59-162 7-97 (291)
164 COG4917 EutP Ethanolamine util 81.7 8 0.00017 31.3 7.1 47 47-103 81-127 (148)
165 COG0655 WrbA Multimeric flavod 80.6 11 0.00023 31.9 8.1 58 58-123 2-82 (207)
166 PRK00911 dihydroxy-acid dehydr 80.3 14 0.0003 36.5 9.6 54 45-103 20-73 (552)
167 cd00885 cinA Competence-damage 80.0 16 0.00035 30.2 8.8 75 87-170 24-103 (170)
168 PRK01231 ppnK inorganic polyph 78.8 5.5 0.00012 36.0 6.0 83 59-162 6-96 (295)
169 smart00852 MoCF_biosynth Proba 78.4 8.7 0.00019 30.0 6.5 43 86-128 22-69 (135)
170 cd00886 MogA_MoaB MogA_MoaB fa 78.1 15 0.00033 29.5 8.0 44 86-129 24-74 (152)
171 cd00758 MoCF_BD MoCF_BD: molyb 77.0 14 0.0003 29.0 7.2 44 86-129 23-71 (133)
172 PRK09417 mogA molybdenum cofac 76.4 20 0.00044 30.4 8.5 57 87-145 28-93 (193)
173 PF02514 CobN-Mg_chel: CobN/Ma 75.7 11 0.00025 40.1 8.1 66 55-127 69-142 (1098)
174 PF03698 UPF0180: Uncharacteri 75.6 5.1 0.00011 29.4 4.0 34 86-126 12-45 (80)
175 PRK03094 hypothetical protein; 75.4 5.5 0.00012 29.3 4.1 34 86-126 12-45 (80)
176 PRK14076 pnk inorganic polypho 74.7 7.1 0.00015 38.5 6.0 87 55-162 287-382 (569)
177 PLN02935 Bifunctional NADH kin 74.0 8.3 0.00018 37.6 6.1 82 59-161 196-295 (508)
178 PRK02231 ppnK inorganic polyph 73.4 6.4 0.00014 35.3 4.9 65 85-161 3-75 (272)
179 PRK14498 putative molybdopteri 72.7 15 0.00032 36.5 7.7 88 41-128 170-264 (633)
180 COG4090 Uncharacterized protei 71.8 9.1 0.0002 30.9 4.8 50 114-172 83-134 (154)
181 PRK14491 putative bifunctional 71.2 19 0.00041 35.8 8.1 89 41-129 351-446 (597)
182 cd06305 PBP1_methylthioribose_ 70.9 39 0.00085 28.4 9.1 45 81-125 15-64 (273)
183 PRK03708 ppnK inorganic polyph 70.2 10 0.00022 34.0 5.4 81 60-162 3-90 (277)
184 cd03522 MoeA_like MoeA_like. T 69.3 43 0.00092 30.6 9.4 71 55-130 157-233 (312)
185 cd06281 PBP1_LacI_like_5 Ligan 68.9 43 0.00094 28.2 9.0 46 81-126 15-65 (269)
186 PRK10355 xylF D-xylose transpo 68.4 51 0.0011 29.6 9.7 61 57-125 25-90 (330)
187 cd06292 PBP1_LacI_like_10 Liga 68.3 55 0.0012 27.6 9.5 46 80-125 14-64 (273)
188 PLN02727 NAD kinase 68.3 11 0.00024 39.3 5.9 83 58-162 679-777 (986)
189 cd06318 PBP1_ABC_sugar_binding 68.0 42 0.00092 28.4 8.8 45 80-124 14-63 (282)
190 PF00994 MoCF_biosynth: Probab 67.7 24 0.00051 27.8 6.6 78 86-172 21-103 (144)
191 PLN02929 NADH kinase 67.3 8.4 0.00018 35.1 4.4 61 84-161 36-96 (301)
192 cd06322 PBP1_ABC_sugar_binding 67.1 46 0.00099 28.0 8.7 46 80-125 14-64 (267)
193 cd06274 PBP1_FruR Ligand bindi 67.0 52 0.0011 27.6 9.1 47 80-126 14-65 (264)
194 cd06295 PBP1_CelR Ligand bindi 66.5 66 0.0014 27.2 9.7 46 81-126 26-74 (275)
195 PF01513 NAD_kinase: ATP-NAD k 65.9 2.4 5.1E-05 37.9 0.5 81 59-161 1-109 (285)
196 cd01575 PBP1_GntR Ligand-bindi 64.8 56 0.0012 27.2 8.8 44 83-126 17-65 (268)
197 TIGR02990 ectoine_eutA ectoine 64.7 64 0.0014 28.2 9.3 68 80-158 130-212 (239)
198 cd06282 PBP1_GntR_like_2 Ligan 64.7 52 0.0011 27.4 8.6 44 83-126 17-65 (266)
199 PRK13017 dihydroxy-acid dehydr 64.4 22 0.00047 35.4 6.8 56 43-102 32-88 (596)
200 cd01542 PBP1_TreR_like Ligand- 64.2 55 0.0012 27.3 8.6 45 81-125 15-64 (259)
201 cd01538 PBP1_ABC_xylose_bindin 63.7 55 0.0012 28.2 8.8 46 80-125 14-64 (288)
202 PF06283 ThuA: Trehalose utili 63.6 56 0.0012 27.5 8.6 107 85-208 22-137 (217)
203 cd06309 PBP1_YtfQ_like Peripla 63.5 54 0.0012 27.7 8.6 46 81-126 15-65 (273)
204 cd06267 PBP1_LacI_sugar_bindin 63.4 64 0.0014 26.5 8.8 48 80-127 14-66 (264)
205 PRK06756 flavodoxin; Provision 62.9 73 0.0016 25.0 9.4 44 79-124 14-57 (148)
206 COG4285 Uncharacterized conser 62.7 4.8 0.0001 35.2 1.8 52 113-172 46-97 (253)
207 PRK02645 ppnK inorganic polyph 62.5 21 0.00046 32.3 6.1 82 58-160 4-89 (305)
208 PRK10653 D-ribose transporter 62.2 94 0.002 26.8 10.0 62 56-125 25-91 (295)
209 cd01545 PBP1_SalR Ligand-bindi 61.8 57 0.0012 27.3 8.4 47 80-126 14-66 (270)
210 cd06301 PBP1_rhizopine_binding 61.5 65 0.0014 27.1 8.7 46 80-125 14-65 (272)
211 cd06299 PBP1_LacI_like_13 Liga 61.1 79 0.0017 26.4 9.1 45 82-126 16-65 (265)
212 cd06273 PBP1_GntR_like_1 This 61.1 70 0.0015 26.7 8.8 44 82-125 16-64 (268)
213 cd06300 PBP1_ABC_sugar_binding 61.0 75 0.0016 26.7 9.0 46 80-125 14-69 (272)
214 PRK10569 NAD(P)H-dependent FMN 60.5 48 0.001 27.8 7.5 92 58-160 2-107 (191)
215 PF05368 NmrA: NmrA-like famil 60.3 43 0.00094 28.0 7.3 60 86-147 35-94 (233)
216 cd06310 PBP1_ABC_sugar_binding 60.1 67 0.0014 27.0 8.5 47 80-126 14-67 (273)
217 cd01537 PBP1_Repressors_Sugar_ 60.1 73 0.0016 26.1 8.6 47 81-127 15-66 (264)
218 PF13407 Peripla_BP_4: Peripla 60.1 46 0.00099 27.9 7.4 71 79-160 12-88 (257)
219 PRK09271 flavodoxin; Provision 59.9 88 0.0019 25.1 8.8 81 79-159 13-94 (160)
220 COG0521 MoaB Molybdopterin bio 59.4 25 0.00054 29.4 5.4 46 85-130 30-81 (169)
221 cd01540 PBP1_arabinose_binding 59.3 76 0.0017 27.0 8.8 44 81-125 15-63 (289)
222 PRK04885 ppnK inorganic polyph 59.2 22 0.00048 31.6 5.5 69 60-162 3-71 (265)
223 PF10662 PduV-EutP: Ethanolami 59.1 47 0.001 27.0 6.9 42 49-99 82-123 (143)
224 PRK06131 dihydroxy-acid dehydr 59.0 22 0.00047 35.3 5.8 57 43-103 24-80 (571)
225 PF07085 DRTGG: DRTGG domain; 58.2 31 0.00067 25.7 5.4 59 86-158 33-91 (105)
226 TIGR01753 flav_short flavodoxi 58.1 81 0.0017 24.0 8.0 79 78-159 10-89 (140)
227 cd01536 PBP1_ABC_sugar_binding 57.6 92 0.002 25.7 8.8 48 79-126 13-65 (267)
228 TIGR00110 ilvD dihydroxy-acid 57.4 36 0.00077 33.6 6.9 44 56-103 10-53 (535)
229 cd06321 PBP1_ABC_sugar_binding 57.0 77 0.0017 26.7 8.4 46 80-125 14-66 (271)
230 cd06317 PBP1_ABC_sugar_binding 56.4 83 0.0018 26.3 8.5 45 81-125 16-65 (275)
231 PRK10936 TMAO reductase system 56.1 1.5E+02 0.0033 26.5 11.0 60 57-124 46-112 (343)
232 cd06298 PBP1_CcpA_like Ligand- 55.8 93 0.002 25.9 8.6 45 81-125 15-64 (268)
233 cd06283 PBP1_RegR_EndR_KdgR_li 54.8 81 0.0017 26.2 8.1 46 80-125 14-64 (267)
234 cd01541 PBP1_AraR Ligand-bindi 54.4 1E+02 0.0023 25.9 8.8 45 81-125 15-64 (273)
235 PRK03673 hypothetical protein; 53.9 78 0.0017 29.9 8.4 39 89-127 28-71 (396)
236 PRK10014 DNA-binding transcrip 53.9 1.3E+02 0.0028 26.4 9.6 63 56-126 63-130 (342)
237 cd06323 PBP1_ribose_binding Pe 53.6 91 0.002 25.9 8.2 44 81-124 15-63 (268)
238 cd06324 PBP1_ABC_sugar_binding 53.6 1.4E+02 0.0029 26.1 9.6 45 81-125 16-67 (305)
239 TIGR02634 xylF D-xylose ABC tr 53.6 1.1E+02 0.0024 26.7 9.1 41 84-124 17-62 (302)
240 cd06302 PBP1_LsrB_Quorum_Sensi 53.5 1E+02 0.0023 26.7 8.8 45 80-124 14-64 (298)
241 PF00834 Ribul_P_3_epim: Ribul 53.4 43 0.00094 28.5 6.1 40 85-124 95-135 (201)
242 cd06271 PBP1_AglR_RafR_like Li 52.0 1.3E+02 0.0028 25.0 8.9 46 81-126 19-69 (268)
243 PRK12493 magnesium chelatase s 51.9 58 0.0013 35.6 8.0 41 57-104 253-293 (1310)
244 PRK05569 flavodoxin; Provision 51.8 1.1E+02 0.0024 23.6 8.1 44 78-124 13-56 (141)
245 cd06320 PBP1_allose_binding Pe 51.1 1.3E+02 0.0028 25.3 8.9 45 81-125 15-66 (275)
246 PLN02699 Bifunctional molybdop 50.5 61 0.0013 32.7 7.5 88 41-128 165-261 (659)
247 cd06311 PBP1_ABC_sugar_binding 50.4 1.4E+02 0.003 25.2 8.9 45 81-125 15-69 (274)
248 cd06316 PBP1_ABC_sugar_binding 50.3 1.3E+02 0.0029 25.7 8.9 45 80-124 14-64 (294)
249 TIGR00147 lipid kinase, YegS/R 50.2 1.7E+02 0.0036 25.7 9.6 62 59-127 3-68 (293)
250 cd06280 PBP1_LacI_like_4 Ligan 50.0 73 0.0016 26.7 7.1 44 82-125 16-64 (263)
251 cd06288 PBP1_sucrose_transcrip 49.8 78 0.0017 26.4 7.2 45 81-125 16-65 (269)
252 PRK12448 dihydroxy-acid dehydr 49.6 49 0.0011 33.2 6.5 52 46-102 23-74 (615)
253 PRK08883 ribulose-phosphate 3- 49.5 88 0.0019 26.9 7.5 40 85-124 96-136 (220)
254 cd06312 PBP1_ABC_sugar_binding 49.5 1.5E+02 0.0032 25.0 9.0 46 80-125 15-66 (271)
255 PRK03767 NAD(P)H:quinone oxido 49.5 82 0.0018 26.3 7.2 64 79-143 14-95 (200)
256 cd06308 PBP1_sensor_kinase_lik 49.3 1.3E+02 0.0027 25.4 8.5 44 82-125 16-65 (270)
257 COG4242 CphB Cyanophycinase an 49.0 35 0.00076 30.6 4.9 97 57-168 52-156 (293)
258 cd06284 PBP1_LacI_like_6 Ligan 48.8 80 0.0017 26.3 7.1 45 81-125 15-64 (267)
259 PRK03501 ppnK inorganic polyph 48.8 47 0.001 29.6 5.8 70 59-161 4-74 (264)
260 cd06289 PBP1_MalI_like Ligand- 48.7 1.5E+02 0.0032 24.6 8.7 45 81-125 15-64 (268)
261 PF00532 Peripla_BP_1: Peripla 48.6 60 0.0013 28.5 6.5 59 58-124 2-64 (279)
262 PF09822 ABC_transp_aux: ABC-t 48.1 1.2E+02 0.0026 26.4 8.3 79 56-145 145-223 (271)
263 PRK06851 hypothetical protein; 48.1 60 0.0013 30.4 6.6 52 57-125 214-266 (367)
264 cd06319 PBP1_ABC_sugar_binding 48.0 1.7E+02 0.0036 24.6 9.2 46 80-125 14-64 (277)
265 TIGR01319 glmL_fam conserved h 48.0 91 0.002 30.2 7.9 42 86-127 88-131 (463)
266 PRK00549 competence damage-ind 47.6 1.6E+02 0.0034 27.9 9.5 41 87-127 25-70 (414)
267 cd06296 PBP1_CatR_like Ligand- 47.5 1.3E+02 0.0028 25.1 8.3 45 81-125 15-64 (270)
268 cd06279 PBP1_LacI_like_3 Ligan 47.5 1.4E+02 0.0029 25.5 8.5 45 82-126 21-66 (283)
269 PRK11104 hemG protoporphyrinog 47.4 57 0.0012 26.9 5.8 75 79-161 13-87 (177)
270 PRK11303 DNA-binding transcrip 46.9 2E+02 0.0042 25.1 9.7 62 57-126 61-127 (328)
271 PRK03604 moaC bifunctional mol 46.8 1.3E+02 0.0028 27.6 8.4 46 85-130 178-229 (312)
272 cd06297 PBP1_LacI_like_12 Liga 46.8 1.5E+02 0.0032 25.1 8.5 46 81-126 15-65 (269)
273 TIGR03567 FMN_reduc_SsuE FMN r 46.4 1.1E+02 0.0024 24.8 7.3 87 59-156 2-102 (171)
274 PRK09739 hypothetical protein; 45.5 1.5E+02 0.0032 24.6 8.1 75 57-144 4-106 (199)
275 PRK09722 allulose-6-phosphate 45.0 86 0.0019 27.4 6.7 40 85-124 98-138 (229)
276 COG1609 PurR Transcriptional r 44.8 99 0.0022 28.0 7.5 61 56-124 57-122 (333)
277 cd06275 PBP1_PurR Ligand-bindi 44.2 1E+02 0.0022 25.7 7.1 45 82-126 16-65 (269)
278 PF10087 DUF2325: Uncharacteri 44.1 59 0.0013 23.9 4.9 43 85-127 13-59 (97)
279 PRK08745 ribulose-phosphate 3- 44.0 1.1E+02 0.0023 26.6 7.1 39 85-123 100-139 (223)
280 cd06306 PBP1_TorT-like TorT-li 43.8 2E+02 0.0043 24.3 9.1 45 81-125 15-66 (268)
281 PRK10703 DNA-binding transcrip 43.8 2.2E+02 0.0049 24.9 9.8 62 57-126 59-125 (341)
282 COG4977 Transcriptional regula 43.2 69 0.0015 29.6 6.1 49 115-168 75-124 (328)
283 PRK11921 metallo-beta-lactamas 42.9 1.4E+02 0.003 27.8 8.2 79 79-158 260-341 (394)
284 PRK01185 ppnK inorganic polyph 42.9 66 0.0014 28.8 5.8 74 60-161 3-82 (271)
285 cd06287 PBP1_LacI_like_8 Ligan 42.6 1.3E+02 0.0027 25.8 7.5 45 79-125 21-65 (269)
286 PRK03670 competence damage-ind 42.5 1.2E+02 0.0026 26.8 7.4 41 87-127 25-71 (252)
287 TIGR00200 cinA_nterm competenc 42.5 99 0.0021 29.4 7.2 40 88-127 26-70 (413)
288 PRK07308 flavodoxin; Validated 42.3 1.6E+02 0.0036 22.9 9.4 76 79-158 14-90 (146)
289 COG0036 Rpe Pentose-5-phosphat 42.1 99 0.0021 27.0 6.6 39 85-123 99-138 (220)
290 cd01539 PBP1_GGBP Periplasmic 42.0 2.1E+02 0.0046 24.8 9.0 44 81-124 15-65 (303)
291 PLN03069 magnesiumprotoporphyr 41.6 1.1E+02 0.0024 33.3 8.1 101 56-169 265-377 (1220)
292 cd06315 PBP1_ABC_sugar_binding 41.5 2.2E+02 0.0048 24.2 9.7 44 82-125 17-65 (280)
293 PRK00170 azoreductase; Reviewe 41.2 1.6E+02 0.0035 24.0 7.7 40 57-103 2-43 (201)
294 cd06286 PBP1_CcpB_like Ligand- 41.1 1.3E+02 0.0027 25.1 7.1 46 80-125 14-64 (260)
295 cd06270 PBP1_GalS_like Ligand 41.1 1.2E+02 0.0026 25.4 7.0 44 82-125 16-64 (268)
296 cd06293 PBP1_LacI_like_11 Liga 40.8 1.5E+02 0.0032 24.9 7.5 45 81-125 15-64 (269)
297 PRK11914 diacylglycerol kinase 40.7 2.5E+02 0.0054 24.8 9.3 62 58-127 9-75 (306)
298 PRK08091 ribulose-phosphate 3- 40.5 1.4E+02 0.003 26.1 7.3 39 85-123 106-147 (228)
299 TIGR02417 fruct_sucro_rep D-fr 40.3 2.5E+02 0.0054 24.4 9.8 61 57-125 60-125 (327)
300 PLN02699 Bifunctional molybdop 40.2 2.7E+02 0.0058 28.2 10.2 35 95-129 496-537 (659)
301 cd06291 PBP1_Qymf_like Ligand 40.0 1.2E+02 0.0027 25.2 6.9 46 80-125 14-64 (265)
302 PRK10342 glycerate kinase I; P 40.0 40 0.00086 31.8 4.1 45 109-159 277-323 (381)
303 COG2185 Sbm Methylmalonyl-CoA 40.0 1.2E+02 0.0027 24.6 6.4 56 89-147 34-91 (143)
304 cd06278 PBP1_LacI_like_2 Ligan 39.8 2.2E+02 0.0047 23.6 8.8 43 83-125 17-63 (266)
305 TIGR03566 FMN_reduc_MsuE FMN r 39.7 1.5E+02 0.0033 23.9 7.2 57 59-123 2-75 (174)
306 PRK06851 hypothetical protein; 39.5 87 0.0019 29.3 6.3 53 57-126 30-83 (367)
307 KOG2371 Molybdopterin biosynth 39.1 99 0.0021 29.2 6.4 77 54-130 186-268 (411)
308 TIGR01754 flav_RNR ribonucleot 39.0 1.5E+02 0.0032 23.1 6.8 77 79-159 13-90 (140)
309 PRK10423 transcriptional repre 39.0 1.9E+02 0.0041 25.2 8.2 62 57-126 56-122 (327)
310 TIGR02405 trehalos_R_Ecol treh 38.7 1.7E+02 0.0036 25.5 7.8 61 57-125 59-124 (311)
311 TIGR00045 glycerate kinase. Th 38.6 48 0.001 31.2 4.4 45 109-159 276-322 (375)
312 KOG3974 Predicted sugar kinase 38.5 78 0.0017 28.7 5.4 59 108-171 93-155 (306)
313 cd02067 B12-binding B12 bindin 38.5 1.7E+02 0.0036 21.9 7.7 57 87-146 19-77 (119)
314 cd06272 PBP1_hexuronate_repres 38.1 1.2E+02 0.0026 25.3 6.6 44 82-125 16-60 (261)
315 PF13941 MutL: MutL protein 37.7 1.7E+02 0.0037 28.3 8.1 42 86-127 92-135 (457)
316 cd06290 PBP1_LacI_like_9 Ligan 37.0 1.6E+02 0.0035 24.5 7.2 46 81-126 15-65 (265)
317 COG1058 CinA Predicted nucleot 36.9 1.8E+02 0.004 25.8 7.6 46 78-127 21-71 (255)
318 PRK09492 treR trehalose repres 36.6 2E+02 0.0043 24.9 7.9 60 58-125 63-127 (315)
319 cd06313 PBP1_ABC_sugar_binding 36.0 2.7E+02 0.0058 23.6 8.6 44 81-124 15-63 (272)
320 COG0061 nadF NAD kinase [Coenz 36.0 1.1E+02 0.0024 27.2 6.2 80 59-161 2-88 (281)
321 COG1830 FbaB DhnA-type fructos 36.0 1.3E+02 0.0028 27.0 6.5 39 90-128 174-213 (265)
322 TIGR01481 ccpA catabolite cont 35.1 2.2E+02 0.0047 24.8 8.0 61 57-125 59-124 (329)
323 PF04230 PS_pyruv_trans: Polys 34.8 2E+02 0.0044 23.5 7.4 27 79-105 3-29 (286)
324 PRK09932 glycerate kinase II; 34.5 53 0.0012 31.0 4.0 45 109-159 277-323 (381)
325 cd06314 PBP1_tmGBP Periplasmic 34.3 2.8E+02 0.0061 23.3 8.5 45 81-125 14-64 (271)
326 COG0129 IlvD Dihydroxyacid deh 33.7 1.6E+02 0.0035 29.4 7.3 51 47-102 33-83 (575)
327 TIGR01755 flav_wrbA NAD(P)H:qu 33.4 1.9E+02 0.0041 24.1 6.9 64 79-143 13-94 (197)
328 PRK05568 flavodoxin; Provision 33.3 2E+02 0.0043 22.1 6.7 43 79-124 14-56 (142)
329 PRK07667 uridine kinase; Provi 32.9 1.1E+02 0.0023 25.4 5.3 39 56-104 16-54 (193)
330 PF03709 OKR_DC_1_N: Orn/Lys/A 32.7 1.3E+02 0.0028 22.9 5.3 65 85-159 7-74 (115)
331 TIGR02690 resist_ArsH arsenica 32.6 3.2E+02 0.0069 23.6 8.3 63 81-144 43-117 (219)
332 PF00389 2-Hacid_dh: D-isomer 32.4 1.2E+02 0.0025 23.3 5.1 40 85-126 9-48 (133)
333 cd06285 PBP1_LacI_like_7 Ligan 31.9 2.2E+02 0.0048 23.7 7.3 43 82-124 16-63 (265)
334 PRK13405 bchH magnesium chelat 31.8 2E+02 0.0044 31.3 8.2 59 56-121 245-310 (1209)
335 PF06792 UPF0261: Uncharacteri 31.6 2.2E+02 0.0047 27.2 7.6 93 55-172 183-288 (403)
336 PRK08211 putative dehydratase; 31.4 2.2E+02 0.0047 28.9 7.8 61 41-102 46-114 (655)
337 PRK06852 aldolase; Validated 31.2 2.5E+02 0.0055 25.6 7.7 47 81-128 188-241 (304)
338 PRK13055 putative lipid kinase 31.1 3E+02 0.0065 24.9 8.3 43 85-127 23-70 (334)
339 PRK14057 epimerase; Provisiona 31.0 2.1E+02 0.0045 25.5 7.0 39 85-123 113-161 (254)
340 PF09075 STb_secrete: Heat-sta 30.9 33 0.00071 21.9 1.4 33 136-168 13-45 (48)
341 PRK14075 pnk inorganic polypho 30.9 1E+02 0.0022 27.1 5.1 60 82-162 13-72 (256)
342 COG3199 Predicted inorganic po 30.8 37 0.0008 31.6 2.3 36 116-164 100-135 (355)
343 cd01574 PBP1_LacI Ligand-bindi 30.7 2.4E+02 0.0051 23.4 7.2 45 81-125 15-65 (264)
344 PRK11041 DNA-binding transcrip 30.3 3.1E+02 0.0068 23.4 8.1 61 57-125 35-100 (309)
345 COG0431 Predicted flavoprotein 30.2 1.7E+02 0.0037 24.1 6.1 47 110-159 61-107 (184)
346 PRK05452 anaerobic nitric oxid 30.1 3.2E+02 0.007 26.3 8.7 79 79-158 264-345 (479)
347 TIGR02637 RhaS rhamnose ABC tr 30.1 3.5E+02 0.0075 23.3 8.3 45 80-124 13-64 (302)
348 TIGR00904 mreB cell shape dete 29.9 66 0.0014 28.9 3.8 45 119-167 282-326 (333)
349 TIGR02826 RNR_activ_nrdG3 anae 29.9 97 0.0021 24.9 4.4 27 116-146 61-87 (147)
350 PRK10401 DNA-binding transcrip 29.8 3E+02 0.0065 24.2 8.0 61 57-125 59-124 (346)
351 PRK14987 gluconate operon tran 29.8 2.8E+02 0.006 24.3 7.7 60 57-124 63-127 (331)
352 cd06294 PBP1_ycjW_transcriptio 29.5 3.3E+02 0.0071 22.6 8.9 45 81-125 20-69 (270)
353 COG2100 Predicted Fe-S oxidore 29.4 1.4E+02 0.0031 28.0 5.7 85 56-158 186-294 (414)
354 PRK15408 autoinducer 2-binding 29.3 4E+02 0.0086 24.1 8.8 58 59-124 25-88 (336)
355 cd06277 PBP1_LacI_like_1 Ligan 29.3 2.5E+02 0.0053 23.5 7.1 46 80-125 17-67 (268)
356 PF04016 DUF364: Domain of unk 29.1 76 0.0017 25.5 3.6 53 87-143 23-85 (147)
357 PRK01372 ddl D-alanine--D-alan 28.8 3.9E+02 0.0085 23.3 9.3 39 84-123 25-63 (304)
358 TIGR01196 edd 6-phosphoglucona 28.3 3E+02 0.0066 27.6 8.2 43 55-101 62-104 (601)
359 PRK04761 ppnK inorganic polyph 28.0 41 0.00089 29.7 2.0 36 115-162 24-59 (246)
360 COG0129 IlvD Dihydroxyacid deh 28.0 3.4E+02 0.0073 27.2 8.4 90 78-172 103-221 (575)
361 cd02922 FCB2_FMN Flavocytochro 27.7 4.9E+02 0.011 24.0 9.2 86 86-173 203-296 (344)
362 COG4126 Hydantoin racemase [Am 27.2 1.2E+02 0.0026 26.6 4.7 47 116-176 69-115 (230)
363 COG0426 FpaA Uncharacterized f 27.1 3.6E+02 0.0078 25.6 8.1 77 80-157 260-337 (388)
364 PF03060 NMO: Nitronate monoox 26.9 4E+02 0.0087 24.1 8.4 80 85-171 126-213 (330)
365 PF09538 FYDLN_acid: Protein o 26.8 32 0.0007 26.6 1.0 18 43-60 11-28 (108)
366 COG0391 Uncharacterized conser 26.1 1.4E+02 0.003 27.6 5.1 50 106-160 180-229 (323)
367 KOG4180 Predicted kinase [Gene 25.9 65 0.0014 30.0 2.9 56 87-158 80-135 (395)
368 PRK09701 D-allose transporter 25.8 4.5E+02 0.0097 22.9 9.5 60 58-125 25-91 (311)
369 PLN02493 probable peroxisomal 25.8 4.2E+02 0.0091 24.8 8.4 85 86-173 214-304 (367)
370 PRK10017 colanic acid biosynth 25.8 5.8E+02 0.013 24.2 9.7 16 113-128 114-129 (426)
371 PF01927 Mut7-C: Mut7-C RNAse 25.7 1.5E+02 0.0032 23.7 4.8 41 85-126 10-50 (147)
372 PRK09054 phosphogluconate dehy 25.6 2.8E+02 0.0061 27.9 7.4 43 55-101 63-105 (603)
373 TIGR03521 GldG gliding-associa 25.5 3.2E+02 0.0069 26.8 7.9 77 56-146 182-261 (552)
374 PRK08005 epimerase; Validated 25.3 1.6E+02 0.0034 25.4 5.1 40 85-124 96-136 (210)
375 TIGR03432 yjhG_yagF probable d 25.3 3.5E+02 0.0077 27.4 8.1 61 41-102 40-108 (640)
376 PF09897 DUF2124: Uncharacteri 25.2 28 0.00061 28.5 0.4 45 117-170 81-127 (147)
377 KOG1207 Diacetyl reductase/L-x 25.1 1.1E+02 0.0025 26.3 4.0 40 83-124 19-58 (245)
378 PRK06703 flavodoxin; Provision 24.9 3.4E+02 0.0073 21.2 10.1 41 79-122 14-54 (151)
379 PRK00561 ppnK inorganic polyph 24.8 51 0.0011 29.4 2.0 35 115-161 32-66 (259)
380 TIGR01839 PHA_synth_II poly(R) 24.6 1.4E+02 0.003 29.7 5.1 68 85-167 237-304 (560)
381 PF00289 CPSase_L_chain: Carba 24.3 2.1E+02 0.0046 21.8 5.2 61 83-146 13-73 (110)
382 PRK13057 putative lipid kinase 24.1 3E+02 0.0064 24.2 6.8 44 84-127 15-61 (287)
383 PRK13928 rod shape-determining 23.9 76 0.0016 28.6 3.1 48 117-168 275-323 (336)
384 cd04724 Tryptophan_synthase_al 23.9 4.7E+02 0.01 22.5 8.0 37 86-122 120-158 (242)
385 PF08659 KR: KR domain; Inter 23.8 3.9E+02 0.0085 21.5 8.4 75 86-171 43-125 (181)
386 PRK08811 uroporphyrinogen-III 23.7 1.3E+02 0.0029 26.5 4.5 78 85-172 31-115 (266)
387 PRK13930 rod shape-determining 23.4 92 0.002 27.8 3.5 46 119-168 283-328 (335)
388 PRK13337 putative lipid kinase 23.4 5.2E+02 0.011 22.8 9.6 43 85-127 22-68 (304)
389 cd05014 SIS_Kpsf KpsF-like pro 22.9 2.6E+02 0.0056 20.8 5.5 66 82-159 13-81 (128)
390 PF02602 HEM4: Uroporphyrinoge 22.6 1.1E+02 0.0024 25.5 3.6 42 86-127 2-53 (231)
391 cd01544 PBP1_GalR Ligand-bindi 22.5 3.1E+02 0.0066 23.1 6.5 42 80-124 19-60 (270)
392 COG1445 FrwB Phosphotransferas 22.4 3.2E+02 0.0069 21.7 5.8 87 57-172 2-102 (122)
393 COG1597 LCB5 Sphingosine kinas 22.3 5.2E+02 0.011 23.1 8.2 44 84-127 22-69 (301)
394 COG4635 HemG Flavodoxin [Energ 22.3 2E+02 0.0044 24.1 4.9 41 80-123 14-54 (175)
395 PRK03620 5-dehydro-4-deoxygluc 22.3 1.7E+02 0.0036 26.2 4.9 44 116-161 41-86 (303)
396 COG1832 Predicted CoA-binding 22.1 1.8E+02 0.0038 23.7 4.4 21 86-106 34-54 (140)
397 cd01422 MGS Methylglyoxal synt 22.1 3.6E+02 0.0078 20.5 7.1 66 85-156 34-105 (115)
398 PRK06696 uridine kinase; Valid 22.0 2E+02 0.0043 24.2 5.1 37 56-102 21-57 (223)
399 COG1703 ArgK Putative periplas 21.8 2.3E+02 0.005 26.1 5.6 41 55-105 49-89 (323)
400 PLN03241 magnesium chelatase s 21.3 3.7E+02 0.0081 29.7 7.9 40 56-103 315-354 (1353)
401 PRK09250 fructose-bisphosphate 21.3 2.8E+02 0.0062 25.9 6.2 47 81-128 217-292 (348)
402 cd02071 MM_CoA_mut_B12_BD meth 21.2 3.7E+02 0.0081 20.4 6.6 56 88-146 20-77 (122)
403 PRK13929 rod-share determining 21.0 66 0.0014 29.2 2.1 47 117-167 278-325 (335)
404 PRK06015 keto-hydroxyglutarate 21.0 3.1E+02 0.0068 23.4 6.1 89 55-161 2-106 (201)
405 cd03557 L-arabinose_isomerase 21.0 3E+02 0.0065 26.8 6.6 41 86-126 27-76 (484)
406 PRK15395 methyl-galactoside AB 20.7 5.9E+02 0.013 22.5 8.9 62 57-126 24-91 (330)
407 PRK10427 putative PTS system f 20.7 3.3E+02 0.0072 21.0 5.7 62 57-127 3-68 (114)
408 PF12724 Flavodoxin_5: Flavodo 20.7 1.4E+02 0.0029 23.4 3.6 60 79-143 10-69 (143)
409 COG0237 CoaE Dephospho-CoA kin 20.5 1.2E+02 0.0026 25.8 3.4 30 56-99 1-30 (201)
410 PLN02979 glycolate oxidase 20.3 7.3E+02 0.016 23.3 9.3 86 86-173 213-303 (366)
411 PRK15453 phosphoribulokinase; 20.1 2.3E+02 0.0049 25.8 5.2 37 56-102 4-40 (290)
412 cd06578 HemD Uroporphyrinogen- 20.0 1.8E+02 0.0039 23.9 4.4 43 85-127 11-60 (239)
No 1
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=100.00 E-value=9.9e-46 Score=317.86 Aligned_cols=219 Identities=68% Similarity=1.096 Sum_probs=198.9
Q ss_pred hHHHHHHHhh-hhhhhhhcccceeccCCCCCCCCccccccccCCCCCCCCCCCCEEEEeCCCCCCCCCCcCCccchhhhH
Q 039121 6 WIPILLCLFN-ELSFAEAESSTILLPSQQHNADSVSTTFCAHCPAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYIS 84 (232)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~ 84 (232)
|++|+-+++. ....+...+.+|+||+|.+.+.||+ +.|++|||++++||||||+++|+++++|++.+++.++||+
T Consensus 4 ~~~~~~l~~~~~S~~~~~~~~~ilLps~~g~e~SRs----pvcsapdpnlnykPvIGIL~hpg~g~~~rl~n~t~~~yIA 79 (340)
T KOG1559|consen 4 FLFFLSLLFFMASPGALLCAESILLPSQAGFELSRS----PVCSAPDPNLNYKPVIGILSHPGDGASGRLKNATGRSYIA 79 (340)
T ss_pred hHHHHHHHHhccChHHHHHHhheecccccccccccC----ccccCCCCCcccCceeEEeccCCCCccceeccccCcchhH
Confidence 6666666544 3333444448999999999778887 9999999999999999999999999999998999999999
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFEL 164 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Ql 164 (232)
+|||+++|..||+|+++.++.+++.+.++++.++|||+|||+.....|++..+.+++++++++|.++++||+|||+||++
T Consensus 80 ASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~ 159 (340)
T KOG1559|consen 80 ASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFEL 159 (340)
T ss_pred HHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceeee
Q 039121 165 LSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKLC 228 (232)
Q Consensus 165 L~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~~ 228 (232)
|.+..+...++++.++..+.+.+++|+.+.+.++++|+++|++++++|+++|+++++|.||+.+
T Consensus 160 lsmiISqnrdile~~d~vd~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp 223 (340)
T KOG1559|consen 160 LSMIISQNRDILERFDAVDVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISP 223 (340)
T ss_pred HHHHHhcChhHHHhhcccccccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccch
Confidence 9999884447899999999999999998777789999999999999999999999999999865
No 2
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.97 E-value=1.2e-30 Score=231.93 Aligned_cols=165 Identities=47% Similarity=0.743 Sum_probs=143.4
Q ss_pred EEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCC-CC-ccChhHHH
Q 039121 60 IGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWA-KS-GLYYDIVE 137 (232)
Q Consensus 60 IGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~-~~-~~~~~~~~ 137 (232)
|||++++.+.. ...+..++||+++|+++++++|+++++++++.+.+++++.++.+||||++||+. .+ ..|...++
T Consensus 1 igil~~~~~~~---~~~~~~~~yi~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~ 77 (273)
T cd01747 1 IGILTQPVDGA---GSNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAK 77 (273)
T ss_pred CeEEeeecCcc---ccccchhHHHHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHH
Confidence 89999998653 234467899999999999999999999998766788888899999999999974 32 45677788
Q ss_pred HHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCcc
Q 039121 138 KIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCL 217 (232)
Q Consensus 138 ~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~ 217 (232)
.+++.+++.++.++++||||||+|||+|+.++||++..+...+.++.+.|+++++... +++||+++|+++.+.+.+++.
T Consensus 78 ~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~-~s~lF~~~p~~l~~~l~~~~~ 156 (273)
T cd01747 78 IIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLEATEATNSALPLNFTEDAL-QSRLFKRFPPDLLKSLATEPL 156 (273)
T ss_pred HHHHHHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccCCCccccceEEEEEccccc-cChhhhcCCHHHHHHHhcccH
Confidence 9999999998889999999999999999999999765556777888899999987655 789999999999999999999
Q ss_pred ceEeecceeee
Q 039121 218 VMQNHHVRKLC 228 (232)
Q Consensus 218 ~y~~Hs~gv~~ 228 (232)
+||+|+|++.+
T Consensus 157 ~~~~Hs~~v~~ 167 (273)
T cd01747 157 TMNNHRYGISP 167 (273)
T ss_pred HHhhcccccCH
Confidence 99999999854
No 3
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.95 E-value=1.5e-28 Score=211.67 Aligned_cols=159 Identities=28% Similarity=0.403 Sum_probs=105.0
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCC-CCCccChhH-
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGW-AKSGLYYDI- 135 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~-~~~~~~~~~- 135 (232)
|+|||++++..... ........+|++++|+++++++|++++++|+..+.++++++++++||||||||. +++|.+|++
T Consensus 1 PvIGI~~~~~~~~~-~~~~~~~~~~i~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~ 79 (217)
T PF07722_consen 1 PVIGITAQPSESDS-SDFPGYPRSYIAASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEE 79 (217)
T ss_dssp -EEEEE-EE----S-HHHHHC-SEEEEHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT--
T ss_pred CEEEEeCCcccccc-CCcCchhHHHHhHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCc
Confidence 89999999864211 112346788999999999999999999999998889999999999999999999 887766643
Q ss_pred ----------HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcccc-ccc-ccC--------CCceEeEEEeecCC
Q 039121 136 ----------VEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNI-LET-FDR--------ANQASTLQFVKNIN 195 (232)
Q Consensus 136 ----------~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~i-l~~-~~~--------e~~~~pl~~~~~~~ 195 (232)
.|+.++.++.+++.++++||||||||||+|++++||++.- +.. ... ....+++...+
T Consensus 80 ~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~--- 156 (217)
T PF07722_consen 80 PSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVP--- 156 (217)
T ss_dssp -BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEET---
T ss_pred ccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceecc---
Confidence 6899999999999999999999999999999999998621 111 100 12233444431
Q ss_pred CCCCCCcCCChhHHhhhcCCccceEeecceeee
Q 039121 196 IEGTLFQRFPPELLKKLSTDCLVMQNHHVRKLC 228 (232)
Q Consensus 196 ~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~~ 228 (232)
.+ ++..+.. .++..++++||+++..
T Consensus 157 -~s-~l~~~~~------~~~~~vns~Hhq~v~~ 181 (217)
T PF07722_consen 157 -GS-LLAKILG------SEEIEVNSFHHQAVKP 181 (217)
T ss_dssp -TS-TCCCTSH------HCTEEEEEEECEEECC
T ss_pred -Cc-hHHHHhC------cCcceeecchhhhhhc
Confidence 23 3333321 2455788999999853
No 4
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.92 E-value=2.2e-25 Score=192.53 Aligned_cols=117 Identities=26% Similarity=0.352 Sum_probs=99.6
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChh
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYD 134 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~ 134 (232)
++||+|||++.......+ ..+...+|....|++++..+|+.++.+|...+.+++.++++.+||||+|||.+++|.+|+
T Consensus 1 ~~kpvIGIt~~~~~~~~~--~~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YG 78 (243)
T COG2071 1 MSKPVIGITADLIQEIVG--FDGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYG 78 (243)
T ss_pred CCCCEEEEecchhccccc--cCCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcC
Confidence 479999999987653222 234567899999999999999999999976678888999999999999999887776664
Q ss_pred H-----------HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 135 I-----------VEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 135 ~-----------~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
+ +||.++.++.+.+.++++||||||||||+||+++||++
T Consensus 79 ee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL 128 (243)
T COG2071 79 EEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTL 128 (243)
T ss_pred CCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCee
Confidence 3 68888888888888889999999999999999999986
No 5
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.85 E-value=4.6e-21 Score=168.86 Aligned_cols=114 Identities=19% Similarity=0.287 Sum_probs=87.3
Q ss_pred CCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCC-CCCcc
Q 039121 54 LNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGW-AKSGL 131 (232)
Q Consensus 54 ~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~-~~~~~ 131 (232)
.|+||+|||+++.... .+...+++...|+++++++|+.++++++.. +.+.+++.++.+|||||+||+ +++|.
T Consensus 4 ~m~~P~Igi~~~~~~~------~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~ 77 (254)
T PRK11366 4 IMNNPVIGVVMCRNRL------KGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPH 77 (254)
T ss_pred CCCCCEEEEeCCCccc------CcchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHh
Confidence 3679999999864321 112456899999999999999999999653 345667778889999999985 56543
Q ss_pred Ch---------hHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 132 YY---------DIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 132 ~~---------~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
+| ...||.++..+.+.+.++++||||||+|||+|++++||++
T Consensus 78 ~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl 128 (254)
T PRK11366 78 LYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSL 128 (254)
T ss_pred hcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeE
Confidence 33 3355666666655556667999999999999999999996
No 6
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.75 E-value=8.1e-18 Score=141.79 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=87.1
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehh
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
++|- .++++++++.|..+.+++++.. +. +.++.+||||++||++. +..+....++++. + ..++|+||||
T Consensus 11 dsf~-~~i~~~l~~~g~~~~v~~~~~~--~~-~~l~~~d~iIi~gGp~~-~~~~~~~~~~i~~-~-----~~~~PiLGIC 79 (190)
T PRK06895 11 DSFT-FNLVDLIRKLGVPMQVVNVEDL--DL-DEVENFSHILISPGPDV-PRAYPQLFAMLER-Y-----HQHKSILGVC 79 (190)
T ss_pred CchH-HHHHHHHHHcCCcEEEEECCcc--Ch-hHhccCCEEEECCCCCC-hHHhhHHHHHHHH-h-----cCCCCEEEEc
Confidence 4454 3589999999999988886431 12 22567999999999984 3333333444443 2 3469999999
Q ss_pred HHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 160 LGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 160 lG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
+|||+|+.++||++.... ...++++.++... . +++||+++|+++ .+|++|+|++.
T Consensus 80 lG~Qlla~~~Gg~V~~~~-~~~~g~~~~v~~~---~-~~~l~~~~~~~~--------~v~~~Hs~~v~ 134 (190)
T PRK06895 80 LGHQTLCEFFGGELYNLN-NVRHGQQRPLKVR---S-NSPLFDGLPEEF--------NIGLYHSWAVS 134 (190)
T ss_pred HHHHHHHHHhCCeEeecC-CCccCceEEEEEC---C-CChhhhcCCCce--------EEEcchhheec
Confidence 999999999999963222 2345655555543 2 578999998765 58999999985
No 7
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.74 E-value=1.6e-17 Score=139.46 Aligned_cols=120 Identities=23% Similarity=0.313 Sum_probs=87.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFEL 164 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Ql 164 (232)
.++++++++.|+++.+++++.+.+++.+. .+||||||||+... +......+++.++++ ++||||||+|||+
T Consensus 12 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~glii~Gg~~~~--~~~~~~~~i~~~~~~-----~~PilGIC~G~Ql 82 (188)
T TIGR00888 12 QLIARRLRELGVYSELVPNTTPLEEIREK--NPKGIILSGGPSSV--YAENAPRADEKIFEL-----GVPVLGICYGMQL 82 (188)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHhhc--CCCEEEECCCCCCc--CcCCchHHHHHHHhC-----CCCEEEECHHHHH
Confidence 57788999999999999988766665442 36799999998721 212234556666654 5999999999999
Q ss_pred HHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 165 LSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 165 L~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
|+.++||++. .....+.++.++..++ .++||+++|+.+ .+|++|++++.
T Consensus 83 l~~~lgg~v~--~~~~~~~g~~~v~~~~----~~~l~~~~~~~~--------~~~~~H~~~v~ 131 (188)
T TIGR00888 83 MAKQLGGEVG--RAEKREYGKAELEILD----EDDLFRGLPDES--------TVWMSHGDKVK 131 (188)
T ss_pred HHHhcCceEe--cCCCccceeEEEEEec----CCHhhcCCCCCc--------EEEeEccceee
Confidence 9999999852 2223455666776653 467999888654 57889999874
No 8
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.73 E-value=2.2e-17 Score=139.18 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=87.0
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEee
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILG 157 (232)
++|| ..+++++|++.|+.+.+++++. +.+++.+ .++|+||++|||.. +........+++. +. .++||||
T Consensus 8 ~Dsf-t~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~-p~~~~~~~~~~~~-~~-----~~~PiLG 77 (187)
T PRK08007 8 YDSF-TWNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCT-PDEAGISLDVIRH-YA-----GRLPILG 77 (187)
T ss_pred CCcc-HHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCC-hHHCCccHHHHHH-hc-----CCCCEEE
Confidence 3455 3588999999999999998864 4444443 26899999999983 2222233444544 22 3699999
Q ss_pred hhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 158 ICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 158 IClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
||+|||+|+.++||++. ......++...++..+ .+.+|++++..+ .++++|++++.
T Consensus 78 IClG~Q~la~a~Gg~v~-~~~~~~~g~~~~v~~~-----~~~l~~~~~~~~--------~v~~~H~~~v~ 133 (187)
T PRK08007 78 VCLGHQAMAQAFGGKVV-RAAKVMHGKTSPITHN-----GEGVFRGLANPL--------TVTRYHSLVVE 133 (187)
T ss_pred ECHHHHHHHHHcCCEEE-eCCCcccCCceEEEEC-----CCCcccCCCCCc--------EEEEcchhEEc
Confidence 99999999999999963 2222345555666543 345888887544 68999999884
No 9
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.73 E-value=4.2e-17 Score=137.50 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=86.7
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEee
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILG 157 (232)
++|| ..++++++++.|+.+++++++. +.+++.+. .+|||||+||+.. +.......++++.+ . .++||||
T Consensus 8 ~dsf-t~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iilsgGpg~-p~~~~~~~~~i~~~-~-----~~~PvLG 77 (188)
T TIGR00566 8 YDSF-TYNLVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVISPGPCT-PNEAGISLEAIRHF-A-----GKLPILG 77 (188)
T ss_pred CcCH-HHHHHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEEcCCCCC-hhhcchhHHHHHHh-c-----cCCCEEE
Confidence 4555 4689999999999999998653 44555432 5899999999973 21112234555554 2 3599999
Q ss_pred hhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 158 ICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 158 IClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
||+|||+|+.++||++.. .....++++.++..+ .+.+|.++++.+ .++++|++++.
T Consensus 78 IC~G~Qll~~~~GG~v~~-~~~~~~g~~~~v~~~-----~~~~~~~l~~~~--------~v~~~H~~~v~ 133 (188)
T TIGR00566 78 VCLGHQAMGQAFGGDVVR-ANTVMHGKTSEIEHN-----GAGIFRGLFNPL--------TATRYHSLVVE 133 (188)
T ss_pred ECHHHHHHHHHcCCEEee-CCCccccceEEEEEC-----CCccccCCCCCc--------EEEEcccceEe
Confidence 999999999999999632 222345667776654 345777776533 57889999874
No 10
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.72 E-value=4.2e-17 Score=140.31 Aligned_cols=124 Identities=11% Similarity=0.137 Sum_probs=87.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCC-hHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 84 SASYVKFAESGGARVIPLIFNEP-EEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~-~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
..++++++++.|+++++++++.+ .++..++++.+|||||+||+.. +........+++.+++. ++||||||+||
T Consensus 13 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~-~~~~~~~~~~i~~~~~~-----~~PiLGIC~G~ 86 (214)
T PRK07765 13 VFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGT-PERAGASIDMVRACAAA-----GTPLLGVCLGH 86 (214)
T ss_pred HHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCC-hhhcchHHHHHHHHHhC-----CCCEEEEccCH
Confidence 45788999999999999998753 1334444568999999999973 32223344666666654 59999999999
Q ss_pred HHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 163 ELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 163 QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
|+|+.++||++. ......++...++.++ .+.+|.++++.+ .+|++|++.+.
T Consensus 87 Qlla~a~GG~v~-~~~~~~~g~~~~v~~~-----~~~~~~~~~~~~--------~v~~~H~~~v~ 137 (214)
T PRK07765 87 QAIGVAFGATVD-RAPELLHGKTSSVHHT-----GVGVLAGLPDPF--------TATRYHSLTIL 137 (214)
T ss_pred HHHHHHhCCEEe-eCCCCccCceeEEEEC-----CCccccCCCCcc--------EEEecchheEe
Confidence 999999999963 2222234444445443 234787776544 58889999874
No 11
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.72 E-value=2.3e-17 Score=139.10 Aligned_cols=105 Identities=28% Similarity=0.410 Sum_probs=79.1
Q ss_pred EEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccCh------
Q 039121 60 IGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYY------ 133 (232)
Q Consensus 60 IGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~------ 133 (232)
|||+++..... ......+|+..+++++++.+|+.+++++++.+.+++++.++.+||||||||++..+..+
T Consensus 1 ~gi~~~~~~~~----~~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~ 76 (189)
T cd01745 1 IGITARLREEE----GGYERRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHP 76 (189)
T ss_pred CEEcCcccccc----CccHHHHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCc
Confidence 68888865432 12234789999999999999999999998776666666678899999999987433211
Q ss_pred -----hHH-----HHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 134 -----DIV-----EKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 134 -----~~~-----~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
... .++++.+++ .++||||||+|||+|+.++||++
T Consensus 77 ~~~~~~~~r~~~~~~~~~~~~~-----~~~PilgiC~G~Q~l~~~~Gg~v 121 (189)
T cd01745 77 ELGPIDPERDAFELALLRAALE-----RGKPILGICRGMQLLNVALGGTL 121 (189)
T ss_pred ccCCCChhHHHHHHHHHHHHHH-----CCCCEEEEcchHHHHHHHhCCeE
Confidence 112 344444444 35999999999999999999996
No 12
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.72 E-value=3.5e-17 Score=137.95 Aligned_cols=125 Identities=13% Similarity=0.166 Sum_probs=83.8
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEee
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILG 157 (232)
++|| ..+++++|++.|+++.+++++. +.+++++. .+|+||++|||..... ......+++. + .+++||||
T Consensus 8 ~dsf-~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~~~~~-~~~~~~~i~~-~-----~~~~PiLG 77 (191)
T PRK06774 8 YDSF-TYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPCTPNE-AGISLAVIRH-F-----ADKLPILG 77 (191)
T ss_pred CCch-HHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCCChHh-CCCchHHHHH-h-----cCCCCEEE
Confidence 3455 3588999999999999999763 45555442 6899999999973211 1122334443 2 23699999
Q ss_pred hhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 158 ICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 158 IClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
||+|||+|+.++||++.-.. ..+.++..+... . .++||+++++.+ .+|++|++++.
T Consensus 78 IC~G~Qlla~~~GG~v~~~~--~~~~G~~~~~~~---~-~~~lf~~l~~~~--------~v~~~Hs~~v~ 133 (191)
T PRK06774 78 VCLGHQALGQAFGARVVRAR--QVMHGKTSAICH---S-GQGVFRGLNQPL--------TVTRYHSLVIA 133 (191)
T ss_pred ECHHHHHHHHHhCCEEEeCC--cceecceEEEEe---c-CchhhcCCCCCc--------EEEEeCcceee
Confidence 99999999999999963221 122233333332 2 456888876543 68999999884
No 13
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.72 E-value=8e-17 Score=134.69 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=86.4
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehh
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
.+| ...+++++++.|+++.+++++.+.+.+.+ ++.+||||++||+.... .....+.+.+. +.+ ++|+||||
T Consensus 8 ~~~-~~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~dgvil~gG~~~~~-~~~~~~~i~~~-~~~-----~~PvlGIC 78 (184)
T cd01743 8 DSF-TYNLVQYLRELGAEVVVVRNDEITLEELE-LLNPDAIVISPGPGHPE-DAGISLEIIRA-LAG-----KVPILGVC 78 (184)
T ss_pred Ccc-HHHHHHHHHHcCCceEEEeCCCCCHHHHh-hcCCCEEEECCCCCCcc-cchhHHHHHHH-Hhc-----CCCEEEEC
Confidence 344 35788999999999999999876554333 46899999999987321 11122333333 332 59999999
Q ss_pred HHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 160 LGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 160 lG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
+|||+|+.++||++. ..+...++.+.++..+ .+.+|+++|+.+ .+|++|+|++.
T Consensus 79 ~G~Qlla~~~Gg~v~-~~~~~~~g~~~~v~~~-----~~~~~~~~~~~~--------~~~~~H~~~v~ 132 (184)
T cd01743 79 LGHQAIAEAFGGKVV-RAPEPMHGKTSEIHHD-----GSGLFKGLPQPF--------TVGRYHSLVVD 132 (184)
T ss_pred HhHHHHHHHhCCEEE-eCCCCCcCceeEEEEC-----CCccccCCCCCc--------EEEeCcEEEEe
Confidence 999999999999853 2233334555555543 456888887544 68999999874
No 14
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.72 E-value=9.6e-18 Score=141.85 Aligned_cols=122 Identities=21% Similarity=0.217 Sum_probs=74.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECC-CCCCCccChhHHH--HHHHHHHHhcCCCCCccEeehhH
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTG-GWAKSGLYYDIVE--KIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~G-G~~~~~~~~~~~~--~~~~~~l~~~~~~~~~PILGICl 160 (232)
-+|+.++++++|+++++. .++++ ++.+|+||||| |...+. + ..++ .+++...+. ...++|+||||+
T Consensus 14 L~Sv~~Aler~G~~~~vs---~d~~~----i~~AD~liLPGVGaf~~a-m-~~L~~~gl~~~i~~~--~~~~kP~LGICl 82 (204)
T COG0118 14 LRSVKKALERLGAEVVVS---RDPEE----ILKADKLILPGVGAFGAA-M-ANLRERGLIEAIKEA--VESGKPFLGICL 82 (204)
T ss_pred HHHHHHHHHHcCCeeEEe---cCHHH----HhhCCEEEecCCCCHHHH-H-HHHHhcchHHHHHHH--HhcCCCEEEEeH
Confidence 368899999999988773 45554 56899999999 776322 1 1111 222322221 123599999999
Q ss_pred HHHHHHHHH--cCccccccc-------ccC------CCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecce
Q 039121 161 GFELLSMIV--SEDRNILET-------FDR------ANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVR 225 (232)
Q Consensus 161 G~QlL~~~~--GG~~~il~~-------~~~------e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~g 225 (232)
|||+|.... ++....+.- ++. |-+|-.+.+. . +++||++++ ++..+||+|||+
T Consensus 83 GMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~---~-~~~l~~gi~--------~~~~~YFVHSY~ 150 (204)
T COG0118 83 GMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFV---R-GHPLFKGIP--------DGAYFYFVHSYY 150 (204)
T ss_pred hHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccceeecc---C-CChhhcCCC--------CCCEEEEEEEEe
Confidence 999999852 222122322 222 2222222222 1 456666655 456899999999
Q ss_pred eee
Q 039121 226 KLC 228 (232)
Q Consensus 226 v~~ 228 (232)
+.+
T Consensus 151 ~~~ 153 (204)
T COG0118 151 VPP 153 (204)
T ss_pred ecC
Confidence 886
No 15
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.71 E-value=4.9e-17 Score=135.18 Aligned_cols=119 Identities=22% Similarity=0.287 Sum_probs=82.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFEL 164 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Ql 164 (232)
.++.++|+++|+.+++++++.+.+ +..++++||||+|||+... +......+.+..++. ++|+||||+|||+
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~--~~~~~~~dgvIl~Gg~~~~--~~~~~~~~~~~~~~~-----~~PilGIC~G~Ql 82 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTPLE--EIKLKNPKGIILSGGPSSV--YEEDAPRVDPEIFEL-----GVPVLGICYGMQL 82 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCChh--hhcccCCCEEEECCCcccc--cccccchhhHHHHhc-----CCCEEEEcHHHHH
Confidence 467888999999999999876543 2236789999999998621 111111223333333 6999999999999
Q ss_pred HHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeeccee
Q 039121 165 LSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRK 226 (232)
Q Consensus 165 L~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv 226 (232)
|+.++||++. +....+.++.++..+ . .++||+++|+++ .+|++|++.+
T Consensus 83 l~~~~gg~v~--~~~~~~~G~~~v~~~---~-~~~l~~~~~~~~--------~~~~~H~~~v 130 (181)
T cd01742 83 IAKALGGKVE--RGDKREYGKAEIEID---D-SSPLFEGLPDEQ--------TVWMSHGDEV 130 (181)
T ss_pred HHHhcCCeEE--eCCCCcceEEEEEec---C-CChhhcCCCCce--------EEEcchhhhh
Confidence 9999999852 222345566666543 2 577999988644 5788999876
No 16
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.70 E-value=6.9e-17 Score=135.16 Aligned_cols=131 Identities=19% Similarity=0.233 Sum_probs=94.2
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeeh
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAI 158 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGI 158 (232)
+.+| .+++++++++.|.++.+++++.+.+...+.++.+||||++||+..... ......+++++.+. ++|+|||
T Consensus 6 ~~~~-~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d-~~~~~~~i~~~~~~-----~~PilGI 78 (192)
T PF00117_consen 6 GDSF-THSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD-IEGLIELIREARER-----KIPILGI 78 (192)
T ss_dssp SHTT-HHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS-HHHHHHHHHHHHHT-----TSEEEEE
T ss_pred CHHH-HHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc-cccccccccccccc-----ceEEEEE
Confidence 3445 468999999999999999987644433224779999999999983222 55677778888775 5999999
Q ss_pred hHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceeee
Q 039121 159 CLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKLC 228 (232)
Q Consensus 159 ClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~~ 228 (232)
|+|||+|+.++||++.-....+.++...++..+. .+++|.++|+.+ .++++|++.+..
T Consensus 79 C~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~--------~~~~~H~~~v~~ 136 (192)
T PF00117_consen 79 CLGHQILAHALGGKVVPSPEKPHHGGNIPISETP----EDPLFYGLPESF--------KAYQYHSDAVNP 136 (192)
T ss_dssp THHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEE----EHGGGTTSTSEE--------EEEEEECEEEEE
T ss_pred eehhhhhHHhcCCccccccccccccccccccccc----cccccccccccc--------ccccccceeeec
Confidence 9999999999999853222123333344444432 246888888766 588999999874
No 17
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.70 E-value=1e-16 Score=134.83 Aligned_cols=124 Identities=16% Similarity=0.243 Sum_probs=83.6
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeeh
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAI 158 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGI 158 (232)
++| ..++++++++.|.++.+++++. +.+.++. + .+||||++||+..... ......+++. + .+++|||||
T Consensus 9 d~f-~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~-~-~~dglIlsgGpg~~~d-~~~~~~~l~~-~-----~~~~PvLGI 78 (189)
T PRK05670 9 DSF-TYNLVQYLGELGAEVVVYRNDEITLEEIEA-L-NPDAIVLSPGPGTPAE-AGISLELIRE-F-----AGKVPILGV 78 (189)
T ss_pred Cch-HHHHHHHHHHCCCcEEEEECCCCCHHHHHh-C-CCCEEEEcCCCCChHH-cchHHHHHHH-h-----cCCCCEEEE
Confidence 445 3689999999999999999864 3444433 3 4899999999963211 1122334432 2 235999999
Q ss_pred hHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 159 CLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 159 ClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
|+|||+|+.++||++.. .....++...++. . . .+++|+++++++ .+|++|++++.
T Consensus 79 ClG~Qlla~alGg~v~~-~~~~~~g~~~~v~-~---~-~~~l~~~~~~~~--------~v~~~H~~~v~ 133 (189)
T PRK05670 79 CLGHQAIGEAFGGKVVR-AKEIMHGKTSPIE-H---D-GSGIFAGLPNPF--------TVTRYHSLVVD 133 (189)
T ss_pred CHHHHHHHHHhCCEEEe-cCCcccCceeEEE-e---C-CCchhccCCCCc--------EEEcchhheec
Confidence 99999999999998532 2222344444444 2 2 466888887544 58899999883
No 18
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.69 E-value=1.4e-16 Score=133.88 Aligned_cols=126 Identities=15% Similarity=0.187 Sum_probs=92.0
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCC-CChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEee
Q 039121 79 NASYISASYVKFAESGGARVIPLIFN-EPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~-~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILG 157 (232)
++||. -++++++++.|+.+.+++.+ .+.+++++ .+.|+||++.||.. |.-.+...++++.+. +++||||
T Consensus 10 yDSFt-yNLv~yl~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG~-P~d~G~~~~~i~~~~------~~~PiLG 79 (191)
T COG0512 10 YDSFT-YNLVQYLRELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPGT-PKDAGISLELIRRFA------GRIPILG 79 (191)
T ss_pred ccchH-HHHHHHHHHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCCC-hHHcchHHHHHHHhc------CCCCEEE
Confidence 45554 48899999999999998876 33333332 36899999999994 333344456666652 3599999
Q ss_pred hhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceeee
Q 039121 158 ICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKLC 228 (232)
Q Consensus 158 IClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~~ 228 (232)
||||||.|++++||++. ..+...|++.+.++.. .+.+|+++|+++ .+..|||..+..
T Consensus 80 VCLGHQai~~~fGg~V~-~a~~~~HGK~s~i~h~-----g~~iF~glp~~f--------~v~RYHSLvv~~ 136 (191)
T COG0512 80 VCLGHQAIAEAFGGKVV-RAKEPMHGKTSIITHD-----GSGLFAGLPNPF--------TVTRYHSLVVDP 136 (191)
T ss_pred ECccHHHHHHHhCCEEE-ecCCCcCCeeeeeecC-----CcccccCCCCCC--------EEEeeEEEEecC
Confidence 99999999999999963 3345677877643332 467999999888 588899987754
No 19
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.69 E-value=1.7e-16 Score=134.79 Aligned_cols=125 Identities=13% Similarity=0.209 Sum_probs=84.4
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEee
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILG 157 (232)
+++| ..+++++|++.|..+.+++++. +.+++.+ .++||||++|||..... .......++.. .+++|+||
T Consensus 8 ~dsf-t~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~~p~~-~~~~~~~i~~~------~~~~PvLG 77 (195)
T PRK07649 8 YDSF-TFNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPCSPNE-AGISMEVIRYF------AGKIPIFG 77 (195)
T ss_pred CCcc-HHHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChHh-CCCchHHHHHh------cCCCCEEE
Confidence 3455 3579999999999999999763 3444433 36899999999973211 12233333322 23699999
Q ss_pred hhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 158 ICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 158 IClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
||+|||+|+.++||++... ....++.+.++.. . .++||+++|+.+ .++++|++.+.
T Consensus 78 IClG~Qlla~~lGg~V~~~-~~~~~G~~~~i~~----~-~~~lf~~~~~~~--------~v~~~H~~~v~ 133 (195)
T PRK07649 78 VCLGHQSIAQVFGGEVVRA-ERLMHGKTSLMHH----D-GKTIFSDIPNPF--------TATRYHSLIVK 133 (195)
T ss_pred EcHHHHHHHHHcCCEEeeC-CCcccCCeEEEEE----C-CChhhcCCCCCC--------EEEEechheEe
Confidence 9999999999999996322 2233454444432 1 456999988654 58889999873
No 20
>PLN02335 anthranilate synthase
Probab=99.68 E-value=2.1e-16 Score=136.69 Aligned_cols=125 Identities=16% Similarity=0.262 Sum_probs=86.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 84 SASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
..+++++|++.|+.+.+++++. +.+.+.. ..+|+|||+|||...... +.. ++... +.+.++||||||+||
T Consensus 31 t~~i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVisgGPg~p~d~-~~~---~~~~~---~~~~~~PiLGIClG~ 101 (222)
T PLN02335 31 TYNLCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLISPGPGTPQDS-GIS---LQTVL---ELGPLVPLFGVCMGL 101 (222)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhhc-cch---HHHHH---HhCCCCCEEEecHHH
Confidence 3578999999999999999753 3333332 368999999999832111 111 22211 134579999999999
Q ss_pred HHHHHHHcCccccccccc-CCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceeee
Q 039121 163 ELLSMIVSEDRNILETFD-RANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKLC 228 (232)
Q Consensus 163 QlL~~~~GG~~~il~~~~-~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~~ 228 (232)
|+|+.++||++. ..... .++.+.+++++.. . .++||+++|+.+ .++++|++++..
T Consensus 102 QlLa~alGg~v~-~~~~~~~~G~~~~v~~~~~-~-~~~Lf~~l~~~~--------~v~~~H~~~v~~ 157 (222)
T PLN02335 102 QCIGEAFGGKIV-RSPFGVMHGKSSPVHYDEK-G-EEGLFSGLPNPF--------TAGRYHSLVIEK 157 (222)
T ss_pred HHHHHHhCCEEE-eCCCccccCceeeeEECCC-C-CChhhhCCCCCC--------EEEechhheEec
Confidence 999999999853 33332 4567777777643 2 467999988544 689999999864
No 21
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.67 E-value=4.5e-16 Score=131.58 Aligned_cols=125 Identities=13% Similarity=0.157 Sum_probs=82.7
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEee
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILG 157 (232)
++|| ..++++++++.|+.+.+++++. +.+.+.+ ...|+||++||+.. +........+++. + ++++||||
T Consensus 8 ~dsf-t~~~~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~~~iilsgGp~~-~~~~~~~~~~i~~-~-----~~~~PiLG 77 (193)
T PRK08857 8 YDSF-TYNLYQYFCELGAQVKVVRNDEIDIDGIEA--LNPTHLVISPGPCT-PNEAGISLQAIEH-F-----AGKLPILG 77 (193)
T ss_pred CCCc-HHHHHHHHHHCCCcEEEEECCCCCHHHHhh--CCCCEEEEeCCCCC-hHHCcchHHHHHH-h-----cCCCCEEE
Confidence 3445 3589999999999999999763 3333322 25899999999972 2111122344443 2 24699999
Q ss_pred hhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 158 ICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 158 IClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
||+|||+|+.++||++.- .....++...++..+ .+++|.++++.+ .++++|++++.
T Consensus 78 IClG~Qlia~a~Gg~v~~-~~~~~~G~~~~~~~~-----~~~l~~~~~~~~--------~v~~~H~~~v~ 133 (193)
T PRK08857 78 VCLGHQAIAQVFGGQVVR-ARQVMHGKTSPIRHT-----GRSVFKGLNNPL--------TVTRYHSLVVK 133 (193)
T ss_pred EcHHHHHHHHHhCCEEEe-CCCceeCceEEEEEC-----CCcccccCCCcc--------EEEEccEEEEE
Confidence 999999999999998632 222223333344332 456898876554 58889999875
No 22
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.67 E-value=4.6e-16 Score=133.42 Aligned_cols=134 Identities=13% Similarity=0.152 Sum_probs=88.6
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehh
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
++|. .+++++|++.|+.+++++++.+.+++.+ ..+|||||+|||.. +.......++++... +++||||||
T Consensus 11 dsf~-~nl~~~l~~~g~~~~v~~~~~~~~~l~~--~~~~~iIlsgGPg~-~~d~~~~~~li~~~~------~~~PiLGIC 80 (208)
T PRK05637 11 DSFV-YNLVDAFAVAGYKCTVFRNTVPVEEILA--ANPDLICLSPGPGH-PRDAGNMMALIDRTL------GQIPLLGIC 80 (208)
T ss_pred cCHH-HHHHHHHHHCCCcEEEEeCCCCHHHHHh--cCCCEEEEeCCCCC-HHHhhHHHHHHHHHh------CCCCEEEEc
Confidence 3443 5789999999999999998766555543 27899999999983 211122234444322 259999999
Q ss_pred HHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhH----HhhhcCCccceEeeccee
Q 039121 160 LGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPEL----LKKLSTDCLVMQNHHVRK 226 (232)
Q Consensus 160 lG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l----~~~l~~~~~~y~~Hs~gv 226 (232)
+|||+|+.++||++. .....++...++.++.... ++++|+++|.+. ...+..+-.++.+|++.+
T Consensus 81 lG~Qlla~alGG~V~--~~~~~~G~~~~i~~~~~~~-~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v 148 (208)
T PRK05637 81 LGFQALLEHHGGKVE--PCGPVHGTTDNMILTDAGV-QSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGC 148 (208)
T ss_pred HHHHHHHHHcCCeec--cCCcccceEEEeEECCCCC-CCcccCCCCcccccccccccCCceEEEEechhhh
Confidence 999999999999963 2123345555566664433 567999887321 111222335778888775
No 23
>CHL00101 trpG anthranilate synthase component 2
Probab=99.66 E-value=4.5e-16 Score=131.36 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=82.5
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeeh
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAI 158 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGI 158 (232)
++| ..++++++++.|..+.+++++. +.+++.. ..+||||++||+.. +......+.+++. + .+++|+|||
T Consensus 9 dsf-t~~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiiisgGpg~-~~~~~~~~~i~~~-~-----~~~~PiLGI 78 (190)
T CHL00101 9 DSF-TYNLVQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIIISPGPGH-PRDSGISLDVISS-Y-----APYIPILGV 78 (190)
T ss_pred Cch-HHHHHHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEECCCCCC-hHHCcchHHHHHH-h-----cCCCcEEEE
Confidence 444 3578899999999999988753 3333322 36999999999973 2111223333432 3 246999999
Q ss_pred hHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 159 CLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 159 ClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
|+|||+|+.++||++.. .....++.+..+. . . .+++|+++|+.+ .++++|++++.
T Consensus 79 ClG~Qlla~~~Gg~V~~-~~~~~~g~~~~~~-~---~-~~~l~~~~~~~~--------~v~~~H~~~v~ 133 (190)
T CHL00101 79 CLGHQSIGYLFGGKIIK-APKPMHGKTSKIY-H---N-HDDLFQGLPNPF--------TATRYHSLIID 133 (190)
T ss_pred chhHHHHHHHhCCEEEE-CCCcccCceeeEe-e---C-CcHhhccCCCce--------EEEcchhheee
Confidence 99999999999999632 2222344443322 2 2 456888887554 58899999884
No 24
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.66 E-value=1e-15 Score=127.78 Aligned_cols=80 Identities=24% Similarity=0.416 Sum_probs=63.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHH
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELL 165 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL 165 (232)
+++++++++|+++++++++.+.+++. ...+||||++||+.. +.......++++.++++ ++||||||+|||+|
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~~~~~~--~~~~dgiil~GG~~~-~~~~~~~~~~~~~~~~~-----~~PvlGIC~G~Q~l 82 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTDAEEIL--KLDPDGIFLSNGPGD-PALLDEAIKTVRKLLGK-----KIPIFGICLGHQLL 82 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHh--hcCCCEEEECCCCCC-hhHhHHHHHHHHHHHhC-----CCCEEEECHHHHHH
Confidence 68999999999999999887655432 347999999999862 22234556677777765 49999999999999
Q ss_pred HHHHcCcc
Q 039121 166 SMIVSEDR 173 (232)
Q Consensus 166 ~~~~GG~~ 173 (232)
+.++||++
T Consensus 83 ~~~~Gg~v 90 (178)
T cd01744 83 ALALGAKT 90 (178)
T ss_pred HHHcCCce
Confidence 99999986
No 25
>PRK00758 GMP synthase subunit A; Validated
Probab=99.65 E-value=4.9e-16 Score=130.03 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=78.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCC-CEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELV-NGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFE 163 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~-dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Q 163 (232)
.+++++++++|+++.+++++.+.+++ +.. ||||+|||++. .+....+++++ + .++||||||+|||
T Consensus 13 ~~i~~~l~~~g~~~~~~~~~~~~~~l----~~~~dgivi~Gg~~~--~~~~~~~~~l~---~-----~~~PilGIC~G~Q 78 (184)
T PRK00758 13 HLIHRTLRYLGVDAKIIPNTTPVEEI----KAFEDGLILSGGPDI--ERAGNCPEYLK---E-----LDVPILGICLGHQ 78 (184)
T ss_pred HHHHHHHHHcCCcEEEEECCCCHHHH----hhcCCEEEECCCCCh--hhccccHHHHH---h-----CCCCEEEEeHHHH
Confidence 46788999999999999877655443 455 99999999952 22222222222 2 2599999999999
Q ss_pred HHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeeccee
Q 039121 164 LLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRK 226 (232)
Q Consensus 164 lL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv 226 (232)
+|+.++||++. .....+.+..++..+. .+.+|.++|+.+ .++++|++.+
T Consensus 79 ~L~~a~Gg~v~--~~~~~~~g~~~i~~~~----~~~l~~~~~~~~--------~~~~~H~~~v 127 (184)
T PRK00758 79 LIAKAFGGEVG--RGEYGEYALVEVEILD----EDDILKGLPPEI--------RVWASHADEV 127 (184)
T ss_pred HHHHhcCcEEe--cCCCceeeeEEEEEcC----CChhhhCCCCCc--------EEEeehhhhh
Confidence 99999999853 2222344455565542 456888887544 5788898865
No 26
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.65 E-value=7.3e-16 Score=128.95 Aligned_cols=127 Identities=17% Similarity=0.237 Sum_probs=92.5
Q ss_pred HHHHHHHHHhCC---CeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCC----ccChhHHHHHHHHHHHhcCCCCCccEe
Q 039121 84 SASYVKFAESGG---ARVIPLIFNEPEEILFEKLELVNGILYTGGWAKS----GLYYDIVEKIFKKILEKNDAGDHFPVY 156 (232)
Q Consensus 84 ~~s~v~~l~~~G---~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~----~~~~~~~~~~~~~~l~~~~~~~~~PIL 156 (232)
...+.++++++| .++.++++..... ...++.+||||++||+... ..|.....++++.++++ ++|+|
T Consensus 13 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~-----~~pil 85 (188)
T cd01741 13 PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAA-----GKPVL 85 (188)
T ss_pred cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHC-----CCCEE
Confidence 457888999999 5777777654322 2336789999999998622 23445567778877765 49999
Q ss_pred ehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 157 AICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 157 GIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
|||+|||+|+.++||++. ......+.+..++.++.... .+++|+++++.+ .++++|++++.
T Consensus 86 giC~G~q~l~~~lGG~v~-~~~~~~~~g~~~v~~~~~~~-~~~l~~~~~~~~--------~v~~~H~~~v~ 146 (188)
T cd01741 86 GICLGHQLLARALGGKVG-RNPKGWEIGWFPVTLTEAGK-ADPLFAGLPDEF--------PVFHWHGDTVV 146 (188)
T ss_pred EECccHHHHHHHhCCEEe-cCCCcceeEEEEEEeccccc-cCchhhcCCCcc--------eEEEEeccChh
Confidence 999999999999999852 22222366788888876543 567888877655 58899999875
No 27
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.63 E-value=1.6e-15 Score=132.34 Aligned_cols=124 Identities=16% Similarity=0.234 Sum_probs=86.5
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC---CccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK---SGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~---~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
.+.+.+...|.....+...... .++ .++.+||||++||+.. +..|....+++++.+++. ++||||||+||
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~-~~p-~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~-----~~PvlGIC~G~ 98 (237)
T PRK09065 26 WIRVALGLAEQPVVVVRVFAGE-PLP-APDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAA-----GMPLLGICYGH 98 (237)
T ss_pred HHHHHhccCCceEEEEeccCCC-CCC-ChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHC-----CCCEEEEChhH
Confidence 3344555678877766654322 222 2467999999999862 224555667778887765 59999999999
Q ss_pred HHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeeccee
Q 039121 163 ELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRK 226 (232)
Q Consensus 163 QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv 226 (232)
|+|+.++||++. ......+.+..++.++.... .+++|+++|+.+ .++++|++.+
T Consensus 99 Qlla~alGg~V~-~~~~g~e~G~~~v~~~~~~~-~~~l~~~~~~~~--------~v~~~H~d~v 152 (237)
T PRK09065 99 QLLAHALGGEVG-YNPAGRESGTVTVELHPAAA-DDPLFAGLPAQF--------PAHLTHLQSV 152 (237)
T ss_pred HHHHHHcCCccc-cCCCCCccceEEEEEccccc-cChhhhcCCccC--------cEeeehhhhh
Confidence 999999999953 22334566778888876544 567998888655 4777888765
No 28
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.63 E-value=1.9e-15 Score=139.12 Aligned_cols=96 Identities=18% Similarity=0.320 Sum_probs=69.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFEL 164 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Ql 164 (232)
.+++++|+++|++++++|++.+.+++.+. .+|||||+||++ ++.......++++.+++ ++||||||+|||+
T Consensus 185 ~ni~~~L~~~G~~v~vvp~~~~~~~i~~~--~pDGIiLSgGPg-dp~~~~~~i~~i~~~~~------~~PILGIClG~Ql 255 (358)
T TIGR01368 185 QNILRRLVKRGCEVTVVPYDTDAEEIKKY--NPDGIFLSNGPG-DPAAVEPAIETIRKLLE------KIPIFGICLGHQL 255 (358)
T ss_pred HHHHHHHHHCCCEEEEEcCCCCHHHHHhh--CCCEEEECCCCC-CHHHHHHHHHHHHHHHc------CCCEEEECHHHHH
Confidence 47999999999999999988765554332 469999999997 34333334455666553 5999999999999
Q ss_pred HHHHHcCcccccccccCCCceEeEEE
Q 039121 165 LSMIVSEDRNILETFDRANQASTLQF 190 (232)
Q Consensus 165 L~~~~GG~~~il~~~~~e~~~~pl~~ 190 (232)
|+.++||++.- .++..++...|+..
T Consensus 256 La~a~Gg~v~k-l~~gh~G~nhpV~~ 280 (358)
T TIGR01368 256 LALAFGAKTYK-MKFGHRGGNHPVKD 280 (358)
T ss_pred HHHHhCCceec-cCcCcCCCceeeEE
Confidence 99999998532 23334444555543
No 29
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.63 E-value=2.3e-15 Score=138.76 Aligned_cols=98 Identities=18% Similarity=0.354 Sum_probs=72.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHH
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFE 163 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Q 163 (232)
..+++++|+++|++++++|++.+.+++.+. .+|||||+||+. ++.......++++.+++. ++||||||+|||
T Consensus 188 k~nivr~L~~~G~~v~vvp~~~~~~~i~~~--~~DGIvLSgGPg-dp~~~~~~~~~i~~~~~~-----~~PilGIClG~Q 259 (360)
T PRK12564 188 KRNILRELAERGCRVTVVPATTTAEEILAL--NPDGVFLSNGPG-DPAALDYAIEMIRELLEK-----KIPIFGICLGHQ 259 (360)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHhc--CCCEEEEeCCCC-ChHHHHHHHHHHHHHHHc-----CCeEEEECHHHH
Confidence 458999999999999999998766665432 699999999997 333234455667777654 499999999999
Q ss_pred HHHHHHcCcccccccccCCCceEeEEE
Q 039121 164 LLSMIVSEDRNILETFDRANQASTLQF 190 (232)
Q Consensus 164 lL~~~~GG~~~il~~~~~e~~~~pl~~ 190 (232)
+|+.++||++.. .++..++...|+..
T Consensus 260 lLa~a~Gg~v~k-l~~gh~G~~~pv~~ 285 (360)
T PRK12564 260 LLALALGAKTYK-MKFGHRGANHPVKD 285 (360)
T ss_pred HHHHHhCCcEec-cCCCccCCceeeEE
Confidence 999999998632 23334444555543
No 30
>PLN02347 GMP synthetase
Probab=99.62 E-value=3.3e-15 Score=143.96 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=87.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCC--ccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKS--GLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~--~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
.++++.+++.|..+++++++.+.+++.+. .+||||||||+... .........+++.+.+. ++||||||+||
T Consensus 24 ~~I~r~lrelgv~~~v~p~~~~~~~i~~~--~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~-----~iPILGIClG~ 96 (536)
T PLN02347 24 HLITRRVRELGVYSLLLSGTASLDRIASL--NPRVVILSGGPHSVHVEGAPTVPEGFFDYCRER-----GVPVLGICYGM 96 (536)
T ss_pred HHHHHHHHHCCCeEEEEECCCCHHHHhcC--CCCEEEECCCCCcccccCCchhhHHHHHHHHhc-----CCcEEEECHHH
Confidence 57888999999999999988776665432 68999999998621 11111223455555433 59999999999
Q ss_pred HHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 163 ELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 163 QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
|+|+.++||++. .....+.++.++++.. +++||+++|+.. ...+|++|++.+.
T Consensus 97 QlLa~alGG~V~--~~~~~e~G~~~v~i~~----~~~Lf~~l~~~~------~~~v~~~Hsd~V~ 149 (536)
T PLN02347 97 QLIVQKLGGEVK--PGEKQEYGRMEIRVVC----GSQLFGDLPSGE------TQTVWMSHGDEAV 149 (536)
T ss_pred HHHHHHcCCEEE--ecCCcccceEEEEEcC----CChhhhcCCCCc------eEEEEEEEEEEee
Confidence 999999999853 2223456677776632 567999987541 1368889998763
No 31
>PRK13566 anthranilate synthase; Provisional
Probab=99.60 E-value=4.2e-15 Score=147.45 Aligned_cols=122 Identities=17% Similarity=0.299 Sum_probs=91.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHH
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFE 163 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Q 163 (232)
.+++.+++++.|+++.+++++.+.+.++. .++|||||+||++.... ....++++.++++ ++||||||+|||
T Consensus 539 ~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~--~~~DgVVLsgGpgsp~d--~~~~~lI~~a~~~-----~iPILGIClG~Q 609 (720)
T PRK13566 539 VHTLANYFRQTGAEVTTVRYGFAEEMLDR--VNPDLVVLSPGPGRPSD--FDCKATIDAALAR-----NLPIFGVCLGLQ 609 (720)
T ss_pred HHHHHHHHHHCCCEEEEEECCCChhHhhh--cCCCEEEECCCCCChhh--CCcHHHHHHHHHC-----CCcEEEEehhHH
Confidence 46888999999999999998776554432 47999999999973211 1356778877765 499999999999
Q ss_pred HHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 164 LLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 164 lL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
+|+.++||++..+ ..+.++.+.+++.+. .+.||+++|+++ .++++|++.+.
T Consensus 610 lLa~alGG~V~~~-~~~~~G~~~~V~v~~----~~~Lf~~lp~~~--------~v~~~Hs~~v~ 660 (720)
T PRK13566 610 AIVEAFGGELGQL-AYPMHGKPSRIRVRG----PGRLFSGLPEEF--------TVGRYHSLFAD 660 (720)
T ss_pred HHHHHcCCEEEEC-CCCccCCceEEEECC----CCchhhcCCCCC--------EEEEecceeEe
Confidence 9999999996322 223455566777653 467999988765 68999998764
No 32
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.59 E-value=5.9e-15 Score=129.21 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCCe---EEEEeCCCChHHHHHhhcCCCEEEECCCCCC--C-----ccChhHHHHHHHHHHHhcCCCCCcc
Q 039121 85 ASYVKFAESGGAR---VIPLIFNEPEEILFEKLELVNGILYTGGWAK--S-----GLYYDIVEKIFKKILEKNDAGDHFP 154 (232)
Q Consensus 85 ~s~v~~l~~~G~~---vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~--~-----~~~~~~~~~~~~~~l~~~~~~~~~P 154 (232)
..|.+++++.|.. +..+..... +.....++.+||||++||+.. + ..|....++.+..++.. +.+.++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~-~~~~~~P 95 (242)
T PRK07567 18 AEYAAFLRYTGLDPAELRRIRLDRE-PLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDE-VVARDFP 95 (242)
T ss_pred chHHHHHHhcCCCccceEEEecccC-CCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHH-HHhcCCC
Confidence 5777788888865 444433222 111113567999999999852 1 23333333333333211 1233699
Q ss_pred EeehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeeccee
Q 039121 155 VYAICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRK 226 (232)
Q Consensus 155 ILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv 226 (232)
|||||+|||+|+.++||++. .....+.++.++++++... .++||.++|..+ .++++|++.+
T Consensus 96 vLGIC~G~Qlla~a~GG~V~--~~~g~e~G~~~v~l~~~g~-~~~l~~~~~~~~--------~~~~~H~d~V 156 (242)
T PRK07567 96 FLGACYGVGTLGHHQGGVVD--RTYGEPVGAVTVSLTDAGR-ADPLLAGLPDTF--------TAFVGHKEAV 156 (242)
T ss_pred EEEEchhHHHHHHHcCCEEe--cCCCCcCccEEEEECCccC-CChhhcCCCCce--------EEEeehhhhh
Confidence 99999999999999999963 2333466778888876544 577998887655 4667787765
No 33
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.59 E-value=6.1e-15 Score=125.69 Aligned_cols=118 Identities=18% Similarity=0.212 Sum_probs=82.7
Q ss_pred HHHHHHHHhCC-CeEEEEeCCCChHHHHHhhcCCCEEEECCCCC---CCccChhHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 85 ASYVKFAESGG-ARVIPLIFNEPEEILFEKLELVNGILYTGGWA---KSGLYYDIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 85 ~s~v~~l~~~G-~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~---~~~~~~~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.-+.+++++.| ....+++++.+.+.++. ...||||++||+. .+..|.....+.+..+... ++||||||+
T Consensus 15 ~li~r~~re~g~v~~e~~~~~~~~~~~~~--~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p-----~~pvLGIC~ 87 (198)
T COG0518 15 GLIARRLRELGYVYSEIVPYTGDAEELPL--DSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVP-----GKPVLGICL 87 (198)
T ss_pred HHHHHHHHHcCCceEEEEeCCCCcccccc--cCCCEEEEcCCCCCCccccccchhHHHHHHHhCCC-----CCCEEEECh
Confidence 34556799999 66777788776655443 3569999999995 1122444555555555443 478999999
Q ss_pred HHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHH-hhhcC
Q 039121 161 GFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELL-KKLST 214 (232)
Q Consensus 161 G~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~-~~l~~ 214 (232)
|||+|+.++||++. ... ..|.++.+++.++ . .+.||+++|+... .++++
T Consensus 88 G~Ql~A~~lGg~V~-~~~-~~E~G~~~v~~~~-~--~~~l~~gl~~~~~~v~~sH 137 (198)
T COG0518 88 GHQLLAKALGGKVE-RGP-KREIGWTPVELTE-G--DDPLFAGLPDLFTTVFMSH 137 (198)
T ss_pred hHHHHHHHhCCEEe-ccC-CCccceEEEEEec-C--ccccccCCccccCccccch
Confidence 99999999999963 222 2788999999875 2 3579999887663 45544
No 34
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.59 E-value=1.3e-14 Score=143.92 Aligned_cols=137 Identities=19% Similarity=0.306 Sum_probs=94.7
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChh
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYD 134 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~ 134 (232)
+..+.|.|.-+- .++ ..++.+++++.|+.+.++++....+ +.+ ...+|+|||+||++.....
T Consensus 514 ~~~~~IlVID~g-------------ds~-~~~l~~~L~~~G~~v~vv~~~~~~~-~~~-~~~~DgLILsgGPGsp~d~-- 575 (717)
T TIGR01815 514 GEGRRILLVDHE-------------DSF-VHTLANYLRQTGASVTTLRHSHAEA-AFD-ERRPDLVVLSPGPGRPADF-- 575 (717)
T ss_pred CCCCEEEEEECC-------------Chh-HHHHHHHHHHCCCeEEEEECCCChh-hhh-hcCCCEEEEcCCCCCchhc--
Confidence 445677777542 223 4688999999999999888764433 222 2469999999999832211
Q ss_pred HHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcC
Q 039121 135 IVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLST 214 (232)
Q Consensus 135 ~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~ 214 (232)
...++++.+++. ++||||||+|||+|+.++||++... +.+.++.+.++..+. .+++|.++|+.+
T Consensus 576 ~~~~~I~~~~~~-----~iPvLGICLG~QlLa~a~GG~V~~~-~~p~~G~~~~V~~~~----~~~Lf~~lp~~~------ 639 (717)
T TIGR01815 576 DVAGTIDAALAR-----GLPVFGVCLGLQGMVEAFGGALDVL-PEPVHGKASRIRVLG----PDALFAGLPERL------ 639 (717)
T ss_pred ccHHHHHHHHHC-----CCCEEEECHHHHHHhhhhCCEEEEC-CCCeeCcceEEEECC----CChhhhcCCCCC------
Confidence 234566666654 5999999999999999999986322 223344455665542 457899888655
Q ss_pred CccceEeecceee
Q 039121 215 DCLVMQNHHVRKL 227 (232)
Q Consensus 215 ~~~~y~~Hs~gv~ 227 (232)
.+|++|+|++.
T Consensus 640 --~v~~~HS~~~~ 650 (717)
T TIGR01815 640 --TVGRYHSLFAR 650 (717)
T ss_pred --EEEEECCCCcc
Confidence 68999999763
No 35
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.58 E-value=1.1e-14 Score=139.74 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=84.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC--CccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK--SGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~--~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
+.+++.++++|+.+.+++++.+.+++.+. ++||||||||+.. +.... .+.+.+++. ++||||||+||
T Consensus 17 ~li~r~lrelg~~~~v~p~~~~~~~l~~~--~~dgIIlsGGp~sv~~~~~p----~~~~~i~~~-----~~PvLGIC~G~ 85 (511)
T PRK00074 17 QLIARRVRELGVYSEIVPYDISAEEIRAF--NPKGIILSGGPASVYEEGAP----RADPEIFEL-----GVPVLGICYGM 85 (511)
T ss_pred HHHHHHHHHCCCeEEEEECCCCHHHHhcc--CCCEEEECCCCcccccCCCc----cccHHHHhC-----CCCEEEECHHH
Confidence 56778899999999999988776665443 5799999999871 11111 112233333 59999999999
Q ss_pred HHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 163 ELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 163 QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
|+|+.++||++. .....+.++.++.++. +++||+++++++ .++++|++++.
T Consensus 86 QlLa~~lGG~V~--~~~~~e~G~~~i~i~~----~~~Lf~~l~~~~--------~v~~~H~d~V~ 136 (511)
T PRK00074 86 QLMAHQLGGKVE--RAGKREYGRAELEVDN----DSPLFKGLPEEQ--------DVWMSHGDKVT 136 (511)
T ss_pred HHHHHHhCCeEE--ecCCcccceEEEEEcC----CChhhhcCCCce--------EEEEECCeEEE
Confidence 999999999852 2223456667777653 467998887544 57889998874
No 36
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.57 E-value=8e-15 Score=133.06 Aligned_cols=97 Identities=19% Similarity=0.344 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 83 ISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 83 i~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
+-+++++.|.+.|+++.++|++.+.+++.++ ++|||+||.||+ +|.-...+...++..++. .+|+||||+|+
T Consensus 189 vK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~--~pDGiflSNGPG-DP~~~~~~i~~ik~l~~~-----~iPifGICLGH 260 (368)
T COG0505 189 VKRNILRELVKRGCRVTVVPADTSAEEILAL--NPDGIFLSNGPG-DPAPLDYAIETIKELLGT-----KIPIFGICLGH 260 (368)
T ss_pred ccHHHHHHHHHCCCeEEEEcCCCCHHHHHhh--CCCEEEEeCCCC-ChhHHHHHHHHHHHHhcc-----CCCeEEEcHHH
Confidence 4568889999999999999999988887654 899999999999 454444555666666654 47999999999
Q ss_pred HHHHHHHcCcccccccccCCCceEeE
Q 039121 163 ELLSMIVSEDRNILETFDRANQASTL 188 (232)
Q Consensus 163 QlL~~~~GG~~~il~~~~~e~~~~pl 188 (232)
|+|+.++|+++.- -+|.-++..+|+
T Consensus 261 QllalA~Ga~T~K-mkFGHrG~NhPV 285 (368)
T COG0505 261 QLLALALGAKTYK-MKFGHRGANHPV 285 (368)
T ss_pred HHHHHhcCCceee-cccCCCCCCcCc
Confidence 9999999999642 234444444454
No 37
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.57 E-value=3.4e-15 Score=126.70 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=75.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECC-CCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTG-GWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFE 163 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~G-G~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Q 163 (232)
.|+.++|++.|+++.++. ++++ ++.+|+||||| |...+....-..+.+++.+.+. ++||||||+|||
T Consensus 14 ~s~~~~l~~~g~~~~~v~---~~~~----~~~~d~iIlPG~G~~~~~~~~l~~~~l~~~i~~~-----~~PilGIClG~Q 81 (196)
T PRK13170 14 SSVKFAIERLGYEPVVSR---DPDV----ILAADKLFLPGVGTAQAAMDQLRERELIDLIKAC-----TQPVLGICLGMQ 81 (196)
T ss_pred HHHHHHHHHCCCeEEEEC---CHHH----hCCCCEEEECCCCchHHHHHHHHHcChHHHHHHc-----CCCEEEECHHHH
Confidence 578889999999888874 3333 56789999999 5442211111112345555443 599999999999
Q ss_pred HHHHHHcCc--ccccc-------c------ccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 164 LLSMIVSED--RNILE-------T------FDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 164 lL~~~~GG~--~~il~-------~------~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
+|+..+++. ...+. . ...|.++.++.++ . ++++|+++|+++ .+|++|+|++.
T Consensus 82 ll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~---~-~~~l~~~l~~~~--------~v~~~Hs~~lp 148 (196)
T PRK13170 82 LLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQ---A-GHPLFQGIEDGS--------YFYFVHSYAMP 148 (196)
T ss_pred HHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeC---C-CChhhhCCCcCC--------EEEEECeeecC
Confidence 999998432 11111 1 1123445555543 2 466888777544 79999999874
No 38
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.57 E-value=1.7e-14 Score=132.67 Aligned_cols=97 Identities=19% Similarity=0.305 Sum_probs=68.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHH
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFE 163 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Q 163 (232)
..+++++|++.|+.++++|++.+.+++.+ ..+|||||+||++ ++.-.....+.++.++ ++ +|+||||+|||
T Consensus 178 k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIiLsgGPg-dp~~~~~~~~~i~~~~-----~~-~PvlGIClG~Q 248 (354)
T PRK12838 178 KKSILRSLSKRGCKVTVLPYDTSLEEIKN--LNPDGIVLSNGPG-DPKELQPYLPEIKKLI-----SS-YPILGICLGHQ 248 (354)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEEcCCCC-ChHHhHHHHHHHHHHh-----cC-CCEEEECHHHH
Confidence 47899999999999999998876666543 2799999999997 2321112223333333 22 99999999999
Q ss_pred HHHHHHcCcccccccccCCCceEeEEE
Q 039121 164 LLSMIVSEDRNILETFDRANQASTLQF 190 (232)
Q Consensus 164 lL~~~~GG~~~il~~~~~e~~~~pl~~ 190 (232)
+|+.++||++.- .++..++..+|+..
T Consensus 249 lLa~a~Gg~v~k-l~~gh~G~~hpV~~ 274 (354)
T PRK12838 249 LIALALGADTEK-LPFGHRGANHPVID 274 (354)
T ss_pred HHHHHhCCEEec-CCCCccCCceEEEE
Confidence 999999999642 22333455566654
No 39
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.56 E-value=5.7e-15 Score=125.58 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=75.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCcc--Chh---HHHHHHHHHHHhcCCCCCccEeehh
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGL--YYD---IVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~--~~~---~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
++..+++++.|+++++++ ++++ ++.+|+|||||+...... +.. -...+.+.++ ++++||||||
T Consensus 13 ~~v~~~l~~~g~~~~~~~---~~~~----l~~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~-----~~~~pvlGiC 80 (201)
T PRK13152 13 NSVAKAFEKIGAINFIAK---NPKD----LQKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVL-----VQKKPILGIC 80 (201)
T ss_pred HHHHHHHHHCCCeEEEEC---CHHH----HcCCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHH-----hCCCcEEEEC
Confidence 588889999999887764 2333 467999999996652211 110 1122233333 3469999999
Q ss_pred HHHHHHHHH--HcCcccccc-------cc-------cCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeec
Q 039121 160 LGFELLSMI--VSEDRNILE-------TF-------DRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHH 223 (232)
Q Consensus 160 lG~QlL~~~--~GG~~~il~-------~~-------~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs 223 (232)
+|||+|+.. .||....+. .+ ..|.++.+++.. . +++||+++++++ .+|++||
T Consensus 81 ~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~~---~-~~~l~~~l~~~~--------~~~~vHS 148 (201)
T PRK13152 81 LGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEIL---K-QSPLYQGIPEKS--------DFYFVHS 148 (201)
T ss_pred HhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEEC---C-CChhhhCCCCCC--------eEEEEcc
Confidence 999999997 233211111 00 124456666543 2 577998887543 5899999
Q ss_pred ceeee
Q 039121 224 VRKLC 228 (232)
Q Consensus 224 ~gv~~ 228 (232)
|.+..
T Consensus 149 ~~v~~ 153 (201)
T PRK13152 149 FYVKC 153 (201)
T ss_pred cEeec
Confidence 98853
No 40
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.56 E-value=1.6e-14 Score=134.72 Aligned_cols=97 Identities=16% Similarity=0.277 Sum_probs=70.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHH
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFE 163 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Q 163 (232)
..++++.|++.|+.++++|++.+.+++.+. ++|||||+|||.. +.......+.++.++. ++||||||+|||
T Consensus 251 K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~--~pDGIiLSnGPGD-P~~~~~~ie~ik~l~~------~iPIlGICLGhQ 321 (415)
T PLN02771 251 KHNILRRLASYGCKITVVPSTWPASEALKM--KPDGVLFSNGPGD-PSAVPYAVETVKELLG------KVPVFGICMGHQ 321 (415)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCHHHHhhc--CCCEEEEcCCCCC-hhHhhHHHHHHHHHHh------CCCEEEEcHHHH
Confidence 468899999999999999998776665432 7999999999973 3322333344444432 499999999999
Q ss_pred HHHHHHcCcccccccccCCCceEeEEE
Q 039121 164 LLSMIVSEDRNILETFDRANQASTLQF 190 (232)
Q Consensus 164 lL~~~~GG~~~il~~~~~e~~~~pl~~ 190 (232)
+|+.++||++. ..++..++...|+..
T Consensus 322 lLa~AlGGkv~-K~~~Gh~G~n~pV~~ 347 (415)
T PLN02771 322 LLGQALGGKTF-KMKFGHHGGNHPVRN 347 (415)
T ss_pred HHHHhcCCeEE-ECCCCcccceEEEEE
Confidence 99999999963 223444555666653
No 41
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.55 E-value=5.4e-15 Score=126.70 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=74.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCcc--Chh---HHHHHHHHHHHhcCCCCCccEeehh
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGL--YYD---IVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~--~~~---~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
++++++|++.|+++. +.+..++++ ++++|+|||||+...... +.. ....+++.+ .++++|+||||
T Consensus 15 ~s~~~al~~~g~~~~-v~~~~~~~~----l~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~PvlGiC 84 (209)
T PRK13146 15 RSAAKALERAGAGAD-VVVTADPDA----VAAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAV-----LAAGRPFLGIC 84 (209)
T ss_pred HHHHHHHHHcCCCcc-EEEECCHHH----hcCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHH-----HhCCCcEEEEC
Confidence 688899999999542 222334444 578999999996542111 111 011222322 23469999999
Q ss_pred HHHHHHHHH------------HcCccccccc-----ccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEee
Q 039121 160 LGFELLSMI------------VSEDRNILET-----FDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNH 222 (232)
Q Consensus 160 lG~QlL~~~------------~GG~~~il~~-----~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~H 222 (232)
+|||+|+.. ++|++...+. ...|.++.++... . +++||+++|+.+ .+|++|
T Consensus 85 ~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~---~-~~~lf~~~~~~~--------~v~~~H 152 (209)
T PRK13146 85 VGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQT---R-DHPLFAGIPDGA--------RFYFVH 152 (209)
T ss_pred HHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeC---C-CChhccCCCCCC--------EEEEEe
Confidence 999999998 5555421110 1123455555443 2 567999888654 689999
Q ss_pred cceee
Q 039121 223 HVRKL 227 (232)
Q Consensus 223 s~gv~ 227 (232)
++.+.
T Consensus 153 s~~v~ 157 (209)
T PRK13146 153 SYYAQ 157 (209)
T ss_pred EEEEE
Confidence 99875
No 42
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.54 E-value=8.2e-14 Score=121.49 Aligned_cols=123 Identities=14% Similarity=0.081 Sum_probs=84.3
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC--C---ccChhHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK--S---GLYYDIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~--~---~~~~~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
++.+++++.|..+.+++...... ....++.+|+||++||+.. + ..|...+.++++.+++. ++|+||||+
T Consensus 18 ~i~~~L~~~g~~~~v~~~~~~~~-~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~-----~~PvlGIC~ 91 (234)
T PRK07053 18 SFEQVLGARGYRVRYVDVGVDDL-ETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAA-----GLPTLGICL 91 (234)
T ss_pred HHHHHHHHCCCeEEEEecCCCcc-CCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHC-----CCCEEEECc
Confidence 56778999999888887643211 1122457999999999851 1 23555667777777765 599999999
Q ss_pred HHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeeccee
Q 039121 161 GFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRK 226 (232)
Q Consensus 161 G~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv 226 (232)
|+|+|+.++||++. . ....|.++.++.+++... .++++ ++++.+ .++++|+..+
T Consensus 92 G~Qlla~alGg~V~-~-~~~~e~G~~~i~~t~~g~-~~pl~-~~~~~~--------~~~~~H~d~~ 145 (234)
T PRK07053 92 GAQLIARALGARVY-P-GGQKEIGWAPLTLTDAGR-ASPLR-HLGAGT--------PVLHWHGDTF 145 (234)
T ss_pred cHHHHHHHcCCcEe-c-CCCCeEeEEEEEEecccc-CChhh-cCCCcc--------eEEEEeCCEE
Confidence 99999999999963 2 223566788888876544 44443 454322 5677787654
No 43
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.54 E-value=2.9e-14 Score=132.16 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=63.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFEL 164 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Ql 164 (232)
.+++++|+++|++++++|++.+.+++.+. ++|||||+||++. +.......+.++.+++. ++||||||+|||+
T Consensus 204 ~ni~~~L~~~G~~v~vvp~~~~~~~i~~~--~~dgIilSgGPg~-p~~~~~~i~~i~~~~~~-----~~PilGIClGhQl 275 (382)
T CHL00197 204 YNILRRLKSFGCSITVVPATSPYQDILSY--QPDGILLSNGPGD-PSAIHYGIKTVKKLLKY-----NIPIFGICMGHQI 275 (382)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHhcc--CCCEEEEcCCCCC-hhHHHHHHHHHHHHHhC-----CCCEEEEcHHHHH
Confidence 47889999999999999998876666443 7999999999983 33222333445555533 5999999999999
Q ss_pred HHHHHcCccc
Q 039121 165 LSMIVSEDRN 174 (232)
Q Consensus 165 L~~~~GG~~~ 174 (232)
|+.++||++.
T Consensus 276 La~a~Gg~v~ 285 (382)
T CHL00197 276 LSLALEAKTF 285 (382)
T ss_pred HHHHhCCEEe
Confidence 9999999863
No 44
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.52 E-value=5e-14 Score=123.17 Aligned_cols=101 Identities=15% Similarity=0.059 Sum_probs=70.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC---CccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK---SGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~---~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
..+++++++.|..+.++.+..+. .+.+.++.+||+|++||+.. ...|...++++++.+++. ++|+||||+|
T Consensus 22 g~l~~~l~~~g~~~~v~~~~~~~-~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~-----~~PvLGIC~G 95 (239)
T PRK06490 22 GRVGQLLQERGYPLDIRRPRLGD-PLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKE-----NKPFLGICLG 95 (239)
T ss_pred hHHHHHHHHCCCceEEEeccCCC-CCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHC-----CCCEEEECHh
Confidence 36778899999988877653221 22223678999999999862 223545556677766655 5999999999
Q ss_pred HHHHHHHHcCccccccccc-CCCceEeEEEee
Q 039121 162 FELLSMIVSEDRNILETFD-RANQASTLQFVK 192 (232)
Q Consensus 162 ~QlL~~~~GG~~~il~~~~-~e~~~~pl~~~~ 192 (232)
||+|+.++||++.-. ... .+.++.++.++.
T Consensus 96 ~Qlla~alGG~V~~~-~~G~~e~G~~~i~~~~ 126 (239)
T PRK06490 96 AQMLARHLGARVAPH-PDGRVEIGYYPLRPTE 126 (239)
T ss_pred HHHHHHHcCCEeecC-CCCCCccceEEeEECC
Confidence 999999999996321 112 255666777654
No 45
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.51 E-value=1.2e-13 Score=120.45 Aligned_cols=123 Identities=17% Similarity=0.252 Sum_probs=85.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC------CccCh--hHHHHHHHHHHHhcCCCCCccEee
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK------SGLYY--DIVEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~------~~~~~--~~~~~~~~~~l~~~~~~~~~PILG 157 (232)
.+..++++.|.++.+...... +.+...++.+||||++||+.. +..|. ..++++++.+++. ++|+||
T Consensus 16 ~~~~~~~~~g~~~~~~~~~~g-~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~-----~~PvlG 89 (235)
T PRK08250 16 AYLKWAENRGYDISYSRVYAG-EALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKA-----GKAVIG 89 (235)
T ss_pred HHHHHHHHCCCeEEEEEccCC-CCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHc-----CCCEEE
Confidence 455678889988876654332 223223567999999999862 12233 3455667777665 599999
Q ss_pred hhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecce
Q 039121 158 ICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVR 225 (232)
Q Consensus 158 IClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~g 225 (232)
||+|+|+|+.++||++. ... ..+.++.++.+++.+. .+++|+++|+.+ .++++|+..
T Consensus 90 IC~G~Qlla~alGg~V~-~~~-~~e~G~~~v~lt~~g~-~d~l~~~~~~~~--------~v~~~H~d~ 146 (235)
T PRK08250 90 VCLGAQLIGEALGAKYE-HSP-EKEIGYFPITLTEAGL-KDPLLSHFGSTL--------TVGHWHNDM 146 (235)
T ss_pred EChhHHHHHHHhCceec-cCC-CCceeEEEEEEccccc-cCchhhcCCCCc--------EEEEEecce
Confidence 99999999999999963 222 2467788888887655 677999888655 366677653
No 46
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.50 E-value=7.8e-14 Score=134.61 Aligned_cols=125 Identities=12% Similarity=0.132 Sum_probs=82.6
Q ss_pred chhhhHHHHHHHHHhCCCe-EEEE-eCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEe
Q 039121 79 NASYISASYVKFAESGGAR-VIPL-IFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVY 156 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~-vv~i-~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PIL 156 (232)
+++|. .++++.|++.|.. +.++ +++.+.+++.. ..+||||++||++. +.......++++.. . .++|||
T Consensus 8 ~dsft-~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~--~~~d~vIlsgGP~~-p~~~~~~~~li~~~-~-----~~~PvL 77 (534)
T PRK14607 8 YDSFT-YNIYQYIGELGPEEIEVVRNDEITIEEIEA--LNPSHIVISPGPGR-PEEAGISVEVIRHF-S-----GKVPIL 77 (534)
T ss_pred chhHH-HHHHHHHHHcCCCeEEEECCCCCCHHHHHh--cCCCEEEECCCCCC-hhhCCccHHHHHHh-h-----cCCCEE
Confidence 45563 6899999999996 5444 34444444432 26899999999983 21112233445442 2 359999
Q ss_pred ehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 157 AICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 157 GIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
|||+|||+|+.++||++. ......++...++... .+.+|+++|+.+ .++++|++++.
T Consensus 78 GIClG~QlLa~a~Gg~V~-~~~~~~~G~~~~v~~~-----~~~lf~~~~~~~--------~v~~~Hs~~v~ 134 (534)
T PRK14607 78 GVCLGHQAIGYAFGGKIV-HAKRILHGKTSPIDHN-----GKGLFRGIPNPT--------VATRYHSLVVE 134 (534)
T ss_pred EEcHHHHHHHHHcCCeEe-cCCccccCCceeEEEC-----CCcchhcCCCCc--------EEeeccchhee
Confidence 999999999999999853 2222234544555432 456898887644 58889999874
No 47
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.49 E-value=6.4e-14 Score=120.36 Aligned_cols=123 Identities=17% Similarity=0.144 Sum_probs=75.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccC--hhH--HHHHHHHHHHhcCCCCCccEeehhH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLY--YDI--VEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~--~~~--~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.+++++++.+|+++++++. +++ ++.+|+||+||+...+... ... ..+.++.+++ +++|+||||+
T Consensus 15 ~sl~~al~~~g~~v~vv~~---~~~----l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~-----~~~pvlGICl 82 (210)
T CHL00188 15 HSVSRAIQQAGQQPCIINS---ESE----LAQVHALVLPGVGSFDLAMKKLEKKGLITPIKKWIA-----EGNPFIGICL 82 (210)
T ss_pred HHHHHHHHHcCCcEEEEcC---HHH----hhhCCEEEECCCCchHHHHHHHHHCCHHHHHHHHHH-----cCCCEEEECH
Confidence 5888999999999988753 232 4579999999944321111 100 1122333333 3699999999
Q ss_pred HHHHHHHHHcCcc-ccc-------ccc-------cCCCceEeEEEeecCCC--CCCCCcCCChhHHhhhcCCccceEeec
Q 039121 161 GFELLSMIVSEDR-NIL-------ETF-------DRANQASTLQFVKNINI--EGTLFQRFPPELLKKLSTDCLVMQNHH 223 (232)
Q Consensus 161 G~QlL~~~~GG~~-~il-------~~~-------~~e~~~~pl~~~~~~~~--~s~LF~~lp~~l~~~l~~~~~~y~~Hs 223 (232)
|||+|+...++.. ..+ +++ -.|.+|.+++++.+... ++.||+++|+.+ .+|++||
T Consensus 83 G~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~--------~v~~~HS 154 (210)
T CHL00188 83 GLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNP--------WAYFVHS 154 (210)
T ss_pred HHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCCC--------EEEEeCc
Confidence 9999999765431 111 111 12346666666543210 145888877554 7999999
Q ss_pred ceee
Q 039121 224 VRKL 227 (232)
Q Consensus 224 ~gv~ 227 (232)
|.+.
T Consensus 155 ~~v~ 158 (210)
T CHL00188 155 YGVM 158 (210)
T ss_pred cEec
Confidence 9874
No 48
>PRK05665 amidotransferase; Provisional
Probab=99.49 E-value=1.6e-13 Score=120.11 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=75.8
Q ss_pred HHHHHHhCCCe--EEEEeCCCChHHHHHhhcCCCEEEECCCCCC---CccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 87 YVKFAESGGAR--VIPLIFNEPEEILFEKLELVNGILYTGGWAK---SGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 87 ~v~~l~~~G~~--vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~---~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
+.+++...+.. +.+.... ..++...++.+||+|++||+.. +..|...++++++.++++ ++|+||||+|
T Consensus 28 ~~~ll~~~~~~~~~~~~~~~--~~~~p~~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~-----~~PilGIC~G 100 (240)
T PRK05665 28 FEQLFARQPIAAEFVVYNVV--QGDYPADDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYER-----GDKLLGVCFG 100 (240)
T ss_pred HHHHHHhCCCCceEEEEecc--CCCCCCCcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhc-----CCCEEEEeHH
Confidence 44566666643 3332221 1122333568999999999862 235666777888877765 4999999999
Q ss_pred HHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeeccee
Q 039121 162 FELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRK 226 (232)
Q Consensus 162 ~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv 226 (232)
+|+|+.++||++. ......+.+..+++++. ..++|..+++.+ .++..|+..|
T Consensus 101 hQlla~AlGG~V~-~~~~G~e~G~~~~~~~~----~~~~~~~~~~~~--------~~~~~H~D~V 152 (240)
T PRK05665 101 HQLLALLLGGKAE-RASQGWGVGIHRYQLAA----HAPWMSPAVTEL--------TLLISHQDQV 152 (240)
T ss_pred HHHHHHHhCCEEE-eCCCCcccceEEEEecC----CCccccCCCCce--------EEEEEcCCee
Confidence 9999999999963 22222344455555543 345777766554 3555666554
No 49
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.46 E-value=8.8e-14 Score=117.68 Aligned_cols=119 Identities=19% Similarity=0.144 Sum_probs=75.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCcc--Ch--hHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGL--YY--DIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~--~~--~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.+.++.|++.|+.+.+++. .++ ++.+|+||+|||...+.. +. ....+.++.+.++ ++||||||+
T Consensus 12 ~~~~~~l~~~g~~v~v~~~---~~~----l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~pilGiC~ 79 (198)
T cd01748 12 RSVANALERLGAEVIITSD---PEE----ILSADKLILPGVGAFGDAMANLRERGLIEALKEAIAS-----GKPFLGICL 79 (198)
T ss_pred HHHHHHHHHCCCeEEEEcC---hHH----hccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHC-----CCcEEEECH
Confidence 5778899999999988763 222 567999999886542111 00 1123445544443 599999999
Q ss_pred HHHHHHHH------------HcCccccccc----ccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecc
Q 039121 161 GFELLSMI------------VSEDRNILET----FDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHV 224 (232)
Q Consensus 161 G~QlL~~~------------~GG~~~il~~----~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~ 224 (232)
|||+|+.+ ++|++..... ...+.++.++..+ . +++||+++|+.+ .+|++|++
T Consensus 80 G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~---~-~~~lf~~l~~~~--------~v~~~Hs~ 147 (198)
T cd01748 80 GMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEIT---K-ESPLFKGIPDGS--------YFYFVHSY 147 (198)
T ss_pred HHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEEC---C-CChhhhCCCCCC--------eEEEEeEE
Confidence 99999998 3444311110 0013345555443 2 567888887544 58899999
Q ss_pred eee
Q 039121 225 RKL 227 (232)
Q Consensus 225 gv~ 227 (232)
.+.
T Consensus 148 ~v~ 150 (198)
T cd01748 148 YAP 150 (198)
T ss_pred EEe
Confidence 874
No 50
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.43 E-value=7.5e-13 Score=133.52 Aligned_cols=133 Identities=15% Similarity=0.163 Sum_probs=87.8
Q ss_pred chhhhHHHHHHHHHhC-CCeEEEEeCCC-ChHHHHHh---hcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCc
Q 039121 79 NASYISASYVKFAESG-GARVIPLIFNE-PEEILFEK---LELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHF 153 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~-G~~vv~i~~~~-~~e~l~~~---l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (232)
++||. .++++.|++. |..+++++++. +.+++... +..+|+|||+|||+. |..........+...+. .++
T Consensus 90 yDSfT-yNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~-P~~~~d~Gi~~~~i~~~----~~i 163 (918)
T PLN02889 90 YDSYT-YNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGS-PTCPADIGICLRLLLEC----RDI 163 (918)
T ss_pred CCchH-HHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCC-ccchHHHHHHHHHHHHh----CCC
Confidence 45664 5789999998 99999888764 34444321 347899999999983 32222221112222221 249
Q ss_pred cEeehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 154 PVYAICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 154 PILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
||||||+|||+|+.++||++.. .+...|++...+.+. .+.||.++|... .+.-.+..|||+.++
T Consensus 164 PILGICLGhQ~i~~~~Gg~V~~-~~~~~HG~~s~I~h~-----~~~lF~glp~~~----~~~f~v~RYHSL~v~ 227 (918)
T PLN02889 164 PILGVCLGHQALGYVHGARIVH-APEPVHGRLSEIEHN-----GCRLFDDIPSGR----NSGFKVVRYHSLVID 227 (918)
T ss_pred cEEEEcHHHHHHHHhcCceEEe-CCCceeeeeeeEeec-----CchhhcCCCcCC----CCCceEEeCCCcccc
Confidence 9999999999999999999642 233456766666542 456999998621 111258889998875
No 51
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.43 E-value=4.2e-13 Score=117.14 Aligned_cols=102 Identities=19% Similarity=0.214 Sum_probs=64.5
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHH---HHhhcCCCEEEECCCCCCCccChh
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEIL---FEKLELVNGILYTGGWAKSGLYYD 134 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l---~~~l~~~dGlIl~GG~~~~~~~~~ 134 (232)
++||++.-..... ..+.+ +..++..+..+.+.++.+++.+.+..+. ++.++.+||||++||+.... ..
T Consensus 1 ~~i~lvg~~~~~~------day~s-~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~~--~~ 71 (235)
T cd01746 1 VRIALVGKYVELP------DAYLS-VLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIRG--VE 71 (235)
T ss_pred CEEEEEECCcCCH------HHHHH-HHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCcc--hh
Confidence 3577777653211 11222 2234444455566777666554432211 24578899999999997322 22
Q ss_pred HHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 135 IVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 135 ~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
...+.++.+++. ++|+||||+|||+|+.++||++
T Consensus 72 ~~~~~i~~~~~~-----~~PvlGIClG~Q~l~~~~g~~~ 105 (235)
T cd01746 72 GKILAIKYAREN-----NIPFLGICLGMQLAVIEFARNV 105 (235)
T ss_pred hHHHHHHHHHHC-----CceEEEEEhHHHHHHHHHHHHh
Confidence 334566666654 5999999999999999999986
No 52
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.43 E-value=2.1e-13 Score=115.56 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=73.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccC--hh--HHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLY--YD--IVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~--~~--~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.+++++++..|.+++++. +.++ ++.+|+||+|||....... .. ...+.++.+++ .++||||||+
T Consensus 13 ~~~~~~l~~~g~~v~~~~---~~~~----l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~-----~~~PvlGiC~ 80 (199)
T PRK13181 13 RSVANALKRLGVEAVVSS---DPEE----IAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVE-----KKQPVLGICL 80 (199)
T ss_pred HHHHHHHHHCCCcEEEEc---ChHH----hccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHH-----CCCCEEEECH
Confidence 577889999999888763 3333 4679999999965411111 00 11233333333 3699999999
Q ss_pred HHHHHHHH-----------HcCccccccc---ccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeeccee
Q 039121 161 GFELLSMI-----------VSEDRNILET---FDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRK 226 (232)
Q Consensus 161 G~QlL~~~-----------~GG~~~il~~---~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv 226 (232)
|||+|+.+ +++++..... ...+.++.++..+ . +++||+++|+.+ .+|++|++.+
T Consensus 81 G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~---~-~~~lf~~l~~~~--------~~~~~Hs~~v 148 (199)
T PRK13181 81 GMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPL---K-ESPLFKGIEEGS--------YFYFVHSYYV 148 (199)
T ss_pred hHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCccccccC---C-CChhHcCCCCCC--------EEEEeCeeEe
Confidence 99999998 3444311110 0123344444332 2 567888887544 5789999987
Q ss_pred ee
Q 039121 227 LC 228 (232)
Q Consensus 227 ~~ 228 (232)
..
T Consensus 149 ~~ 150 (199)
T PRK13181 149 PC 150 (199)
T ss_pred cc
Confidence 43
No 53
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.43 E-value=6.5e-13 Score=128.07 Aligned_cols=126 Identities=13% Similarity=0.181 Sum_probs=78.1
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCChH-HHHHhh-cCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEe
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEPEE-ILFEKL-ELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVY 156 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e-~l~~~l-~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PIL 156 (232)
++||- .++++.|++.|+.+.+++.+.+.+ .++++. .++|+|||+|||+.... .....++++.. . .++|||
T Consensus 10 ~dsft-~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d-~~~~~~i~~~~-~-----~~iPIL 81 (531)
T PRK09522 10 IDSFT-YNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSE-AGCMPELLTRL-R-----GKLPII 81 (531)
T ss_pred CChHH-HHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhh-CCCCHHHHHHH-h-----cCCCEE
Confidence 45553 578899999999998887643311 122221 24789999999983211 12223444432 1 259999
Q ss_pred ehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeeccee
Q 039121 157 AICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRK 226 (232)
Q Consensus 157 GIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv 226 (232)
|||+|||+|+.++||++. ......++....+.. . .+.+|.++|..+ .++.+|++.+
T Consensus 82 GIClG~QlLa~a~GG~V~-~~~~~~~G~~~~i~~----~-~~~lf~~~~~~~--------~v~~~Hs~~v 137 (531)
T PRK09522 82 GICLGHQAIVEAYGGYVG-QAGEILHGKASSIEH----D-GQAMFAGLTNPL--------PVARYHSLVG 137 (531)
T ss_pred EEcHHHHHHHHhcCCEEE-eCCceeeeeEEEEee----c-CCccccCCCCCc--------EEEEehheec
Confidence 999999999999999963 111112232222221 1 356888887544 4777888765
No 54
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.41 E-value=4.7e-13 Score=113.04 Aligned_cols=88 Identities=20% Similarity=0.284 Sum_probs=61.4
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccC---hh
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLY---YD 134 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~---~~ 134 (232)
+.|+|+...++. .++.++++.+|++++.++. +++ ++.+||||+|||+...... ..
T Consensus 2 m~~~i~~~~g~~---------------~~~~~~l~~~g~~~~~~~~---~~~----l~~~dgiii~GG~~~~~~~~~~~~ 59 (189)
T PRK13525 2 MKIGVLALQGAV---------------REHLAALEALGAEAVEVRR---PED----LDEIDGLILPGGESTTMGKLLRDF 59 (189)
T ss_pred CEEEEEEcccCH---------------HHHHHHHHHCCCEEEEeCC---hhH----hccCCEEEECCCChHHHHHHHHhc
Confidence 578888887641 2455679999999988763 222 5689999999997521100 01
Q ss_pred HHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCc
Q 039121 135 IVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSED 172 (232)
Q Consensus 135 ~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~ 172 (232)
...+.++.+.++ ++||||||.|+|+|+..+||.
T Consensus 60 ~~~~~i~~~~~~-----g~PilGIC~G~QlL~~~~gg~ 92 (189)
T PRK13525 60 GLLEPLREFIAS-----GLPVFGTCAGMILLAKEIEGY 92 (189)
T ss_pred cHHHHHHHHHHC-----CCeEEEECHHHHHHHhhcccC
Confidence 123445555543 699999999999999999884
No 55
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.41 E-value=3.5e-13 Score=114.41 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHH-HHHHHHHhcCCCCCccEeehhHHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEK-IFKKILEKNDAGDHFPVYAICLGFE 163 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~-~~~~~l~~~~~~~~~PILGIClG~Q 163 (232)
++.++++++.|++++++. ++++ ++.+|+||+||+....... ...++ -+..++.+ ..++|+||||+|||
T Consensus 13 ~s~~~al~~~g~~~~~v~---~~~~----l~~~D~lIlPG~g~~~~~~-~~L~~~gl~~~i~~---~~g~PvlGIClGmQ 81 (192)
T PRK13142 13 SNVKRAIEHLGYEVVVSN---TSKI----IDQAETIILPGVGHFKDAM-SEIKRLNLNAILAK---NTDKKMIGICLGMQ 81 (192)
T ss_pred HHHHHHHHHcCCCEEEEe---CHHH----hccCCEEEECCCCCHHHHH-HHHHHCCcHHHHHH---hCCCeEEEECHHHH
Confidence 688999999999988864 3333 4679999999975411111 11111 12222222 23699999999999
Q ss_pred HHHHHH
Q 039121 164 LLSMIV 169 (232)
Q Consensus 164 lL~~~~ 169 (232)
+|+...
T Consensus 82 lL~~~~ 87 (192)
T PRK13142 82 LMYEHS 87 (192)
T ss_pred HHhhhc
Confidence 999976
No 56
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.41 E-value=8.6e-13 Score=113.38 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=75.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChh----HHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYD----IVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~----~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.|.+++++..+.+++.+. ++++ ++.+|+||+||+......... ...+.+..+.. +++|+||||+
T Consensus 13 ~s~~~al~~~~~~~~~~~---~~~~----l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~-----~~~pilGiC~ 80 (210)
T PRK14004 13 HSCLKAVSLYTKDFVFTS---DPET----IENSKALILPGDGHFDKAMENLNSTGLRSTIDKHVE-----SGKPLFGICI 80 (210)
T ss_pred HHHHHHHHHcCCeEEEEC---CHHH----hccCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHH-----cCCCEEEECH
Confidence 588899999999887652 3433 468999999997642221110 12233333333 3699999999
Q ss_pred HHHHHHHHHcC--------cccccc-------cc------cCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccce
Q 039121 161 GFELLSMIVSE--------DRNILE-------TF------DRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVM 219 (232)
Q Consensus 161 G~QlL~~~~GG--------~~~il~-------~~------~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y 219 (232)
|||+|+...+. ++..+. .+ -.|.+|.++++++. . .+++|+++|+.+ .+|
T Consensus 81 G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~~-~-~~~lf~~l~~~~--------~v~ 150 (210)
T PRK14004 81 GFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRRK-D-KSKLLKGIGDQS--------FFY 150 (210)
T ss_pred hHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceeccC-C-CCccccCCCCCC--------EEE
Confidence 99999998651 111111 11 13445555555421 2 567888887544 699
Q ss_pred Eeeccee
Q 039121 220 QNHHVRK 226 (232)
Q Consensus 220 ~~Hs~gv 226 (232)
++|||.+
T Consensus 151 ~~HS~~~ 157 (210)
T PRK14004 151 FIHSYRP 157 (210)
T ss_pred Eeceeec
Confidence 9999965
No 57
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.39 E-value=2.5e-12 Score=109.15 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=62.5
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCc-c--ChhH
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSG-L--YYDI 135 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~-~--~~~~ 135 (232)
.|||+.-++. ...|+ .++.++++..|..+.++.... .++ ++.+|+|||+||+.... . +...
T Consensus 2 ~i~vl~~~~~----------~~e~~-~~~~~~l~~~g~~~~~~~~~~-~~~----l~~~d~iii~GG~~~~~~~~~~~~~ 65 (200)
T PRK13527 2 KIGVLALQGD----------VEEHI-DALKRALDELGIDGEVVEVRR-PGD----LPDCDALIIPGGESTTIGRLMKREG 65 (200)
T ss_pred EEEEEEECCc----------cHHHH-HHHHHHHHhcCCCeEEEEeCC-hHH----hccCCEEEECCCcHHHHHHHHhhcc
Confidence 3777766553 23343 467788999998777766543 222 56799999999976211 0 1111
Q ss_pred HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCc
Q 039121 136 VEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSED 172 (232)
Q Consensus 136 ~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~ 172 (232)
..+.++.+.+. ++|+||||+|+|+|+.++||.
T Consensus 66 ~~~~i~~~~~~-----~~pilGIC~G~Qll~~~~gg~ 97 (200)
T PRK13527 66 ILDEIKEKIEE-----GLPILGTCAGLILLAKEVGDD 97 (200)
T ss_pred HHHHHHHHHHC-----CCeEEEECHHHHHHHhhhcCC
Confidence 24445555443 599999999999999999985
No 58
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.38 E-value=3.6e-12 Score=127.19 Aligned_cols=126 Identities=20% Similarity=0.245 Sum_probs=81.2
Q ss_pred HHHHHHHHHhC-C--CeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 84 SASYVKFAESG-G--ARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 84 ~~s~v~~l~~~-G--~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
..++++.|++. | +.+++++++....+....+..+|+||++|||+. +.. .....+++.+++.+ ...++||||||+
T Consensus 18 t~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~-p~~-~~~~~i~~~i~~~~-~~~~iPvLGICl 94 (742)
T TIGR01823 18 TYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGN-PNN-AQDMGIISELWELA-NLDEVPVLGICL 94 (742)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCC-ccc-hhhhHHHHHHHHhc-ccCCCcEEEEch
Confidence 35778888886 3 567788876543333333568999999999983 221 12233455555432 224699999999
Q ss_pred HHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 161 GFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 161 G~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
|||+|+.++||++.-. ....++....+... ...+|.+++. + .++++|++.+.
T Consensus 95 G~QlLa~a~GG~v~~~-~~~~hG~~~~v~~~-----~~~lf~gl~~-~--------~v~~~Hs~~v~ 146 (742)
T TIGR01823 95 GFQSLCLAQGADISRL-PTPKHGQVYEMHTN-----DAAIFCGLFS-V--------KSTRYHSLYAN 146 (742)
T ss_pred hhHHHHhhcCCEEEEC-CCCCcCeEEEEEEC-----CccccCCCCC-C--------ceeEEEEEEcc
Confidence 9999999999996322 22334444444432 3558888874 2 47889998764
No 59
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.36 E-value=1.8e-12 Score=110.14 Aligned_cols=118 Identities=20% Similarity=0.148 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCC--ccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKS--GLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~--~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
.++.++++++|+++++++ +.++ ++.+|+||++||.... ..+....++.++.+++. ++|+||||+|+
T Consensus 14 ~~~~~~l~~~G~~~~~~~---~~~~----~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~-----~~PilgIC~G~ 81 (200)
T PRK13143 14 RSVSKALERAGAEVVITS---DPEE----ILDADGIVLPGVGAFGAAMENLSPLRDVILEAARS-----GKPFLGICLGM 81 (200)
T ss_pred HHHHHHHHHCCCeEEEEC---CHHH----HccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHc-----CCCEEEECHHH
Confidence 688899999999988874 2222 5689999999964311 11222345556655554 59999999999
Q ss_pred HHHHHH------------HcCccccccc--ccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 163 ELLSMI------------VSEDRNILET--FDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 163 QlL~~~------------~GG~~~il~~--~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
|+|+.+ +||++...+. ...+.++..+..+ . ++++|++++. ..++++|++.+.
T Consensus 82 q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~---~-~~~l~~~l~~---------~~~~~~Hs~~~~ 147 (200)
T PRK13143 82 QLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVV---K-DCPLFEGIDG---------EYVYFVHSYYAY 147 (200)
T ss_pred HHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEc---C-CChhhccCCC---------cEEEEEeeeeeC
Confidence 999986 3444211100 0122244445443 2 5667776642 236778888764
No 60
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.35 E-value=1e-12 Score=111.79 Aligned_cols=118 Identities=20% Similarity=0.152 Sum_probs=74.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCcc-Ch---hHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGL-YY---DIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~-~~---~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.++++.+++.|+.+.+++. +++ ++.+|+||+|||...+.. .. ....+.++.++.. ++|+||||+
T Consensus 13 ~~i~~~l~~~G~~v~~~~~---~~~----l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~pvlGIC~ 80 (205)
T PRK13141 13 RSVEKALERLGAEAVITSD---PEE----ILAADGVILPGVGAFPDAMANLRERGLDEVIKEAVAS-----GKPLLGICL 80 (205)
T ss_pred HHHHHHHHHCCCeEEEECC---HHH----hccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHC-----CCcEEEECH
Confidence 6788899999999888642 232 567999999996542111 10 0122334444433 599999999
Q ss_pred HHHHHHHHH------------cCcccccccc-----cCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeec
Q 039121 161 GFELLSMIV------------SEDRNILETF-----DRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHH 223 (232)
Q Consensus 161 G~QlL~~~~------------GG~~~il~~~-----~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs 223 (232)
|+|+|+... +|++.. .+. ..|.++.++..+. +++||+.+|+.+ .++.+|+
T Consensus 81 G~Qll~~~~~~~~~~~~lg~l~g~v~~-~~~~~~~~~~~~g~~~i~~~~----~~~l~~~l~~~~--------~v~~~Hs 147 (205)
T PRK13141 81 GMQLLFESSEEFGETEGLGLLPGRVRR-FPPEEGLKVPHMGWNQLELKK----ESPLLKGIPDGA--------YVYFVHS 147 (205)
T ss_pred HHHHhhhccccCCCCCccceEEEEEEE-cCCCCCCcccEecCccceeCC----CChhhhCCCCCC--------EEEEECe
Confidence 999999973 344311 110 1233445555442 577888877544 5788999
Q ss_pred ceee
Q 039121 224 VRKL 227 (232)
Q Consensus 224 ~gv~ 227 (232)
+.+.
T Consensus 148 ~~v~ 151 (205)
T PRK13141 148 YYAD 151 (205)
T ss_pred eEec
Confidence 8874
No 61
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.34 E-value=1.9e-12 Score=109.71 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=71.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCcc--ChhH--HHHHHHHHHHhcCCCCCccEeehhH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGL--YYDI--VEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~--~~~~--~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.++.++++..|+.+.+++. +++ ++.+|+||+||+...... +... ...+++.+++ .++||||||+
T Consensus 12 ~~l~~~l~~~g~~v~v~~~---~~~----l~~~d~lii~G~~~~~~~~~~l~~~~~~~l~~~~~~-----~~~pvlGiC~ 79 (196)
T TIGR01855 12 GSVKRALKRVGAEPVVVKD---SKE----AELADKLILPGVGAFGAAMARLRENGLDLFVELVVR-----LGKPVLGICL 79 (196)
T ss_pred HHHHHHHHHCCCcEEEEcC---HHH----hccCCEEEECCCCCHHHHHHHHHHcCcHHHHHHHHh-----CCCCEEEECH
Confidence 4677889999999888763 222 568999999985431111 1111 1122233333 3699999999
Q ss_pred HHHHHHHH------------HcCccccccc-ccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 161 GFELLSMI------------VSEDRNILET-FDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 161 G~QlL~~~------------~GG~~~il~~-~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
|||+|+.+ +||++.-... ...+.++..+... . +++||+++|+.+ .+|++|++.+.
T Consensus 80 G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~~---~-~~~l~~~l~~~~--------~v~~~Hs~~v~ 147 (196)
T TIGR01855 80 GMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPV---K-ESPLLNGIDEGA--------YFYFVHSYYAV 147 (196)
T ss_pred HHHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccCeeeeeC---C-CChHHhCCCCCC--------EEEEECeeEec
Confidence 99999998 3444311110 1123333333221 2 466888777544 68999999874
No 62
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.28 E-value=1.1e-11 Score=108.86 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=57.5
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChh---H
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYD---I 135 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~---~ 135 (232)
.|||++.++.. ++..++|+++|++++.+.. +++ +..+|+||||||....-.... .
T Consensus 3 ~igVLa~qG~~---------------~e~~~aL~~lG~ev~~v~~---~~~----L~~~DgLILPGGfs~~~~~L~~~~g 60 (248)
T PLN02832 3 AIGVLALQGSF---------------NEHIAALRRLGVEAVEVRK---PEQ----LEGVSGLIIPGGESTTMAKLAERHN 60 (248)
T ss_pred EEEEEeCCCch---------------HHHHHHHHHCCCcEEEeCC---HHH----hccCCEEEeCCCHHHHHHHHHhhcc
Confidence 59999998752 3557889999999888653 333 568999999997651100001 1
Q ss_pred HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHH
Q 039121 136 VEKIFKKILEKNDAGDHFPVYAICLGFELLSMIV 169 (232)
Q Consensus 136 ~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~ 169 (232)
..+.++.+.+ +++|+||||.|||+|+...
T Consensus 61 l~~~I~~~v~-----~g~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 61 LFPALREFVK-----SGKPVWGTCAGLIFLAERA 89 (248)
T ss_pred hHHHHHHHHH-----cCCCEEEEChhHHHHHHHh
Confidence 2223333332 4699999999999999975
No 63
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.26 E-value=1.1e-10 Score=101.34 Aligned_cols=91 Identities=19% Similarity=0.333 Sum_probs=62.4
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC-Ccc---Ch-
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK-SGL---YY- 133 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~-~~~---~~- 133 (232)
.|+|+..++..+ ..+++++++++|+.++++++... . ++.+|+||||||... +.. ..
T Consensus 2 ~v~Vl~~~G~n~-------------~~~~~~al~~~G~~~~~i~~~~~--~----l~~~d~lilpGG~~~~d~~~~~~~~ 62 (227)
T TIGR01737 2 KVAVIRFPGTNC-------------DRDTVYALRLLGVDAEIVWYEDG--S----LPDYDGVVLPGGFSYGDYLRAGAIA 62 (227)
T ss_pred eEEEEeCCCcCc-------------HHHHHHHHHHCCCeEEEEecCCC--C----CCCCCEEEECCCCcccccccccchh
Confidence 478888876432 34667889999999998876432 1 568999999998742 111 11
Q ss_pred --hHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH--HcCcc
Q 039121 134 --DIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI--VSEDR 173 (232)
Q Consensus 134 --~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~--~GG~~ 173 (232)
....+.++.+.+ +++||+|||.|+|+|+.+ ++|++
T Consensus 63 ~~~~~~~~l~~~~~-----~g~pvlgIC~G~QlLa~~GlL~G~l 101 (227)
T TIGR01737 63 AASPIMQEVREFAE-----KGVPVLGICNGFQILVEAGLLPGAL 101 (227)
T ss_pred cchHHHHHHHHHHH-----cCCEEEEECHHHHHHHHcCCCCCce
Confidence 113344444443 369999999999999995 77763
No 64
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.19 E-value=6.7e-11 Score=113.30 Aligned_cols=98 Identities=29% Similarity=0.383 Sum_probs=69.1
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCC----eEEEEeCCCChHHHH----HhhcCCCEEEECCCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGA----RVIPLIFNEPEEILF----EKLELVNGILYTGGWA 127 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~----~vv~i~~~~~~e~l~----~~l~~~dGlIl~GG~~ 127 (232)
.++.||++..... ..++| .|+.++|+++|+ ++.+.+.+. +++. +.++.+|||++|||++
T Consensus 288 ~~v~IalVGKY~~---------~~daY--~SI~eAL~~ag~~~~~~V~~~~i~s--e~i~~~~~~~L~~~dGIiLpGG~G 354 (525)
T TIGR00337 288 HEVTIGIVGKYVE---------LKDSY--LSVIEALKHAGAKLDTKVNIKWIDS--EDLEEEGAEFLKGVDGILVPGGFG 354 (525)
T ss_pred CCcEEEEEeCCcC---------CHHHH--HHHHHHHHhCccccCCEEEEEEecH--HHhhhhhhhhhcCCCEEEeCCCCC
Confidence 4689999988543 34667 499999999986 344444332 2332 2367899999999996
Q ss_pred CCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 128 KSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
... . ......++++.+. ++|+||||+|||+|+.++|+++
T Consensus 355 ~~~-~-~g~i~ai~~a~e~-----~iP~LGIClG~Qll~i~~grnv 393 (525)
T TIGR00337 355 ERG-V-EGKILAIKYAREN-----NIPFLGICLGMQLAVIEFARNV 393 (525)
T ss_pred Chh-h-cChHHHHHHHHHc-----CCCEEEEcHHHHHHHHHHHHHh
Confidence 322 1 1222456666655 5999999999999999999975
No 65
>PRK06186 hypothetical protein; Validated
Probab=99.18 E-value=1.1e-10 Score=101.60 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=63.8
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCC----CeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChh
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGG----ARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYD 134 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G----~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~ 134 (232)
.||+..-... ..+.|+ |+.++|+.+| .++.+.+.+.+.-+-++.|+.+|||++|||.+..+. +
T Consensus 3 ~IalVGKY~~---------~~daY~--Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~rg~--~ 69 (229)
T PRK06186 3 RIALVGDYNP---------DVTAHQ--AIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYRND--D 69 (229)
T ss_pred EEEEEECCcC---------CcHHHH--HHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcccH--h
Confidence 5777665432 346675 7888888764 566555554321111135788999999999763221 1
Q ss_pred HHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 135 IVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 135 ~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
-....++++.+.+ +|+||||+|||++...++.++
T Consensus 70 Gki~ai~~Are~~-----iP~LGIClGmQ~avIe~arnv 103 (229)
T PRK06186 70 GALTAIRFARENG-----IPFLGTCGGFQHALLEYARNV 103 (229)
T ss_pred HHHHHHHHHHHcC-----CCeEeechhhHHHHHHHHhhh
Confidence 2335678887765 999999999999888776553
No 66
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.14 E-value=2.2e-10 Score=101.60 Aligned_cols=95 Identities=16% Similarity=0.260 Sum_probs=64.1
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCC-CCccCh
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWA-KSGLYY 133 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~-~~~~~~ 133 (232)
++++.|+|+..++.++ ..+.+++++++|+.+..+++.... +....++.+|+|+|+||.. .+....
T Consensus 1 ~~~~kvaVl~~pG~n~-------------d~e~~~Al~~aG~~v~~v~~~~~~-~~~~~l~~~DgLvipGGfs~gD~l~~ 66 (261)
T PRK01175 1 MESIRVAVLRMEGTNC-------------EDETVKAFRRLGVEPEYVHINDLA-AERKSVSDYDCLVIPGGFSAGDYIRA 66 (261)
T ss_pred CCCCEEEEEeCCCCCC-------------HHHHHHHHHHCCCcEEEEeecccc-ccccchhhCCEEEECCCCCccccccc
Confidence 3578999999988653 135568899999999888764321 1122367899999999953 121111
Q ss_pred -----hH----HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 134 -----DI----VEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 134 -----~~----~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.. .++.++.+++ +++||||||+|+|+|+.+
T Consensus 67 g~~~~~~l~~~l~~~Ik~f~~-----~gkpVLGICnG~QlLa~~ 105 (261)
T PRK01175 67 GAIFAARLKAVLRKDIEEFID-----EGYPIIGICNGFQVLVEL 105 (261)
T ss_pred chhhHHHHHHHHHHHHHHHHH-----CCCeEEEECHHHHHHHHC
Confidence 11 1233444444 469999999999999984
No 67
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.13 E-value=2.6e-10 Score=110.16 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCcc--ChhH--HHHHHHHHHHhcCCCCCccEeehhH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGL--YYDI--VEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~--~~~~--~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.+..+++++.|+++..+.. +++ ++.+|+||||||...... ++.. ..+.++.+++. ++|+||||+
T Consensus 20 ~sl~~al~~~G~~v~~v~~---~~~----l~~~D~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~-----g~PvLGIC~ 87 (538)
T PLN02617 20 RSVRNAIRHLGFTIKDVQT---PED----ILNADRLIFPGVGAFGSAMDVLNNRGMAEALREYIQN-----DRPFLGICL 87 (538)
T ss_pred HHHHHHHHHCCCeEEEECC---hhh----hccCCEEEECCCCCHHHHHHHHHHcCHHHHHHHHHHc-----CCCEEEECH
Confidence 5778899999999877642 332 578999999996652111 1111 23345555543 599999999
Q ss_pred HHHHHHHHH--cCccccccc-------c-------cCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecc
Q 039121 161 GFELLSMIV--SEDRNILET-------F-------DRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHV 224 (232)
Q Consensus 161 G~QlL~~~~--GG~~~il~~-------~-------~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~ 224 (232)
|||+|+..+ +|....+.. + ..|.++.++... . +++||++++ +..+|++|+|
T Consensus 88 G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~---~-~spL~~~l~---------~~~vy~vHSy 154 (538)
T PLN02617 88 GLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQIT---K-DSELLDGVG---------GRHVYFVHSY 154 (538)
T ss_pred HHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEec---C-CChhHhcCC---------CcEEEEEeEE
Confidence 999999874 122222211 1 113345555443 2 567887764 2258999999
Q ss_pred eee
Q 039121 225 RKL 227 (232)
Q Consensus 225 gv~ 227 (232)
.+.
T Consensus 155 ~v~ 157 (538)
T PLN02617 155 RAT 157 (538)
T ss_pred EEE
Confidence 853
No 68
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.13 E-value=2.8e-10 Score=109.15 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCC----eEEEEeCCCCh---HHHHHhhcCCCEEEECCCCCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGA----RVIPLIFNEPE---EILFEKLELVNGILYTGGWAKS 129 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~----~vv~i~~~~~~---e~l~~~l~~~dGlIl~GG~~~~ 129 (232)
+-.||+..-... ..+.| .|+.++|+++|+ ++.+.+.+... +...+.++.+||||||||++..
T Consensus 288 ~v~IalVGKY~~---------l~DaY--~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~ 356 (533)
T PRK05380 288 EVTIALVGKYVE---------LPDAY--KSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGER 356 (533)
T ss_pred ceEEEEEeCccC---------CcHHH--HHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCcc
Confidence 456999887532 24556 478888888754 45555544321 1134567899999999998632
Q ss_pred ccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 130 GLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
. ......+++++.+. ++|+||||+|||+|+.++||++
T Consensus 357 ~--~~g~i~~i~~a~e~-----~iPiLGIClGmQll~va~Ggnv 393 (533)
T PRK05380 357 G--IEGKILAIRYAREN-----NIPFLGICLGMQLAVIEFARNV 393 (533)
T ss_pred c--cccHHHHHHHHHHC-----CCcEEEEchHHHHHHHHhcccc
Confidence 2 12234566776655 5999999999999999999986
No 69
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.09 E-value=1e-10 Score=98.09 Aligned_cols=86 Identities=26% Similarity=0.369 Sum_probs=59.2
Q ss_pred EEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCc-c--ChhHH
Q 039121 60 IGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSG-L--YYDIV 136 (232)
Q Consensus 60 IGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~-~--~~~~~ 136 (232)
|||++.+++.. +..+++++.|++++.+... ++ ++.+|+||++||+.... . +....
T Consensus 1 igvl~~qg~~~---------------e~~~~l~~~g~~v~~v~~~---~~----l~~~dgiii~Gg~~~~~~~~~~~~~~ 58 (183)
T cd01749 1 IGVLALQGDFR---------------EHIRALERLGVEVIEVRTP---ED----LEGIDGLIIPGGESTTIGKLLRRTGL 58 (183)
T ss_pred CEEEEecCCcH---------------HHHHHHHHCCCeEEEECCH---HH----hccCCEEEECCchHHHHHHHHHhCCH
Confidence 68888766421 3337899999999887642 22 57899999999986110 0 11112
Q ss_pred HHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCc
Q 039121 137 EKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSED 172 (232)
Q Consensus 137 ~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~ 172 (232)
.+.++.++++ ++|+||||.|+|+|+..+++.
T Consensus 59 ~~~i~~~~~~-----g~PvlGiC~G~qlL~~~~~~~ 89 (183)
T cd01749 59 LDPLREFIRA-----GKPVFGTCAGLILLAKEVEDQ 89 (183)
T ss_pred HHHHHHHHHc-----CCeEEEECHHHHHHHHHhccc
Confidence 3444555444 699999999999999999873
No 70
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.08 E-value=6.2e-10 Score=97.19 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=63.2
Q ss_pred EEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCcc------Ch
Q 039121 60 IGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGL------YY 133 (232)
Q Consensus 60 IGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~------~~ 133 (232)
|+|+..|+.++ ..+++++++++|+.+++++.....+ .+..++.+|+||||||...... +.
T Consensus 1 v~vl~~pG~n~-------------~~~~~~al~~aG~~v~~v~~~~~~~-~~~~l~~~d~liipGG~~~~d~l~~~~~~~ 66 (238)
T cd01740 1 VAVLRFPGSNC-------------DRDMAYAFELAGFEAEDVWHNDLLA-GRKDLDDYDGVVLPGGFSYGDYLRAGAIAA 66 (238)
T ss_pred CEEEEcCCcCC-------------HHHHHHHHHHcCCCEEEEeccCCcc-ccCCHhhCCEEEECCCCCcccccccccccc
Confidence 46677776543 2467788999999999888754211 1223568999999999752110 01
Q ss_pred -hH-HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH--HcCcc
Q 039121 134 -DI-VEKIFKKILEKNDAGDHFPVYAICLGFELLSMI--VSEDR 173 (232)
Q Consensus 134 -~~-~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~--~GG~~ 173 (232)
.. ..++++.+.+ +++||||||.|+|+|+.+ ++|+.
T Consensus 67 ~~~~~~~~l~~~~~-----~g~pvlGIC~G~QlL~~~gll~g~~ 105 (238)
T cd01740 67 ASPLLMEEVKEFAE-----RGGLVLGICNGFQILVELGLLPGAL 105 (238)
T ss_pred cChhHHHHHHHHHh-----CCCeEEEECcHHHHHHHcCCCcccc
Confidence 11 3344555544 369999999999999996 67663
No 71
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.07 E-value=6e-10 Score=92.02 Aligned_cols=122 Identities=16% Similarity=0.251 Sum_probs=82.7
Q ss_pred HHHHHH-HhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHH
Q 039121 86 SYVKFA-ESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFE 163 (232)
Q Consensus 86 s~v~~l-~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Q 163 (232)
+++++| -+.|+.+.+.+.++ +-++++++ ++++++++.||+.+. -.+.-++.+.+. +..+|+||||.|.|
T Consensus 33 Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~--NP~~LliSPGPG~P~-DsGIs~~~i~~f------~~~iP~fGvCMGlQ 103 (223)
T KOG0026|consen 33 NLCQYLMGELGCHFEVYRNDELTVEELKRK--NPRGLLISPGPGTPQ-DSGISLQTVLEL------GPLVPLFGVCMGLQ 103 (223)
T ss_pred HHHHHhhhccCccEEEEecCcccHHHHhhc--CCCeEEecCCCCCCc-cccchHHHHHHh------CCCCceeeeehhhh
Confidence 566666 56788888877654 34455543 799999999998422 222233333332 34699999999999
Q ss_pred HHHHHHcCccccccccc-CCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 164 LLSMIVSEDRNILETFD-RANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 164 lL~~~~GG~~~il~~~~-~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
.|.+++||++. ...+. .|+..++++.... . +.-+|+++|..+ .+-.+||.+..
T Consensus 104 Ci~e~fGGkv~-~a~~~i~HGK~S~i~~D~~-~-~~G~f~g~~q~~--------~V~RYHSLa~~ 157 (223)
T KOG0026|consen 104 CIGEAFGGKIV-RSPFGVMHGKSSMVHYDEK-G-EEGLFSGLSNPF--------IVGRYHSLVIE 157 (223)
T ss_pred hhhhhhCcEEe-ccCcceeeccccccccCCc-c-ccccccCCCCCe--------EEEeeeeeeee
Confidence 99999999963 33332 4677777776432 2 356999998766 47778887653
No 72
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.07 E-value=5.8e-10 Score=96.14 Aligned_cols=88 Identities=26% Similarity=0.446 Sum_probs=62.9
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhc-CCCEEEECCCCCCCccChh
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLE-LVNGILYTGGWAKSGLYYD 134 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~-~~dGlIl~GG~~~~~~~~~ 134 (232)
.+|.|+|+..|+.++ ....+++++.+|+.++.++.+... +. .+|+|++|||... ++|.+
T Consensus 1 ~~~kvaVi~fpGtN~-------------d~d~~~A~~~aG~~~~~V~~~d~~------~~~~~d~vv~pGGFSy-GDyLr 60 (231)
T COG0047 1 ARPKVAVLRFPGTNC-------------DYDMAAAFERAGFEAEDVWHSDLL------LGRDFDGVVLPGGFSY-GDYLR 60 (231)
T ss_pred CCceEEEEEcCCcCc-------------hHHHHHHHHHcCCCceEEEeeecc------cCCCccEEEEcCCCCc-ccccC
Confidence 379999999998765 135666789999999999875421 34 5999999999862 22222
Q ss_pred -----H---HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 135 -----I---VEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 135 -----~---~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
. .++.++...+ +++|+||||.|||+|.++
T Consensus 61 ~Gaiaa~~~v~~~v~~~a~-----~g~~vLGICNGfQiL~e~ 97 (231)
T COG0047 61 AGAIAAIAPVMDEVREFAE-----KGKPVLGICNGFQILSEA 97 (231)
T ss_pred cchHHhhHHHHHHHHHHHH-----CCCeEEEEcchhHHHHHc
Confidence 1 2333333333 579999999999999964
No 73
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.01 E-value=5.8e-10 Score=93.65 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=56.2
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCc-cChh--
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSG-LYYD-- 134 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~-~~~~-- 134 (232)
..|||++-+++. .+..+++++.|++++.+. ++++ ++.+|+||||||..... ...+
T Consensus 3 ~~igVLalqG~~---------------~Eh~~al~~lG~~v~~v~---~~~~----l~~~D~LILPGG~~t~~~~ll~~~ 60 (179)
T PRK13526 3 QKVGVLAIQGGY---------------QKHADMFKSLGVEVKLVK---FNND----FDSIDRLVIPGGESTTLLNLLNKH 60 (179)
T ss_pred cEEEEEECCccH---------------HHHHHHHHHcCCcEEEEC---CHHH----HhCCCEEEECCChHHHHHHHhhhc
Confidence 569999998853 235678999999877754 3444 56899999999965211 1111
Q ss_pred HHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 135 IVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 135 ~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
...+.++... +++|++|||.|||+|+..
T Consensus 61 ~l~~~Ik~~~------~~kpilGICaG~qlL~~~ 88 (179)
T PRK13526 61 QIFDKLYNFC------SSKPVFGTCAGSIILSKG 88 (179)
T ss_pred CcHHHHHHHH------cCCcEEEEcHHHHHHHcc
Confidence 1223333332 147999999999999984
No 74
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.00 E-value=8.2e-10 Score=93.04 Aligned_cols=84 Identities=20% Similarity=0.324 Sum_probs=57.9
Q ss_pred EEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCc---cChhHH
Q 039121 60 IGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSG---LYYDIV 136 (232)
Q Consensus 60 IGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~---~~~~~~ 136 (232)
|||+.-+++. .+..++++++|++++.++. +++ ++.+|+||+|||....- .+....
T Consensus 2 igvl~~qg~~---------------~e~~~~l~~~g~~~~~v~~---~~~----l~~~d~liipGG~~~~~~~l~~~~~l 59 (184)
T TIGR03800 2 IGVLALQGAV---------------REHARALEALGVEGVEVKR---PEQ----LDEIDGLIIPGGESTTLSRLLDKYGM 59 (184)
T ss_pred EEEEEccCCH---------------HHHHHHHHHCCCEEEEECC---hHH----hccCCEEEECCCCHHHHHHHHHhccH
Confidence 7888887642 3456889999999888753 332 56899999999965210 011112
Q ss_pred HHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHc
Q 039121 137 EKIFKKILEKNDAGDHFPVYAICLGFELLSMIVS 170 (232)
Q Consensus 137 ~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~G 170 (232)
.+.++.+.++ ++|+||||.|||+|+..+.
T Consensus 60 ~~~i~~~~~~-----g~pilGIC~G~qlL~~~~~ 88 (184)
T TIGR03800 60 FEPLRNFILS-----GLPVFGTCAGLIMLAKEII 88 (184)
T ss_pred HHHHHHHHHc-----CCcEEEECHHHHHHHhhhc
Confidence 3344444443 6999999999999999973
No 75
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.00 E-value=1.6e-10 Score=107.58 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=71.3
Q ss_pred cchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCC----CCccChhHHHHHHHHHHHhcCCCCCc
Q 039121 78 TNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWA----KSGLYYDIVEKIFKKILEKNDAGDHF 153 (232)
Q Consensus 78 ~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~----~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (232)
++...|++ .+++......++|.+.+...+.+ ..+-|||++|||. .+.++++. ++|+. ++
T Consensus 27 QY~~~I~R----rvRel~v~se~~p~~t~~~~i~~--~~~rgiIiSGGP~SVya~dAP~~dp--~if~~---------~v 89 (552)
T KOG1622|consen 27 QYGKVIDR----RVRELNVQSEILPLTTPAKTITE--YGPRGIIISGGPNSVYAEDAPSFDP--AIFEL---------GV 89 (552)
T ss_pred hhhHHHHH----HHHHHhhhhhhccCCChhhhhhc--CCceEEEEeCCCCccccCcCCCCCh--hHhcc---------CC
Confidence 34445555 47777777778888777666655 3789999999996 12233322 23332 49
Q ss_pred cEeehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHH
Q 039121 154 PVYAICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELL 209 (232)
Q Consensus 154 PILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~ 209 (232)
||||||+|||+|+..+||++ .+....|.+...+.... .+.||+++.....
T Consensus 90 pvLGICYGmQ~i~~~~Gg~V--~~~~~RE~G~~eI~v~~----~~~lF~~~~~~~~ 139 (552)
T KOG1622|consen 90 PVLGICYGMQLINKLNGGTV--VKGMVREDGEDEIEVDD----SVDLFSGLHKTEF 139 (552)
T ss_pred cceeehhHHHHHHHHhCCcc--ccccccCCCCceEEcCc----hhhhhhhhcccce
Confidence 99999999999999999985 33333455554444321 4557877765443
No 76
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=98.97 E-value=1.7e-09 Score=107.80 Aligned_cols=80 Identities=21% Similarity=0.409 Sum_probs=63.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHH
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFE 163 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Q 163 (232)
-.+.+++|.+.|+++.++|++.+... ..+|||+|++||+ +|......-+-++..++. ++||+|||+|||
T Consensus 183 K~N~IRcL~~RGa~vtVvPw~~~i~~-----~~yDGlflSNGPG-dPe~~~~~v~~vr~lL~~-----~~PvfGIClGHQ 251 (1435)
T KOG0370|consen 183 KYNQIRCLVKRGAEVTVVPWDYPIAK-----EEYDGLFLSNGPG-DPELCPLLVQNVRELLES-----NVPVFGICLGHQ 251 (1435)
T ss_pred hHHHHHHHHHhCceEEEecCCccccc-----cccceEEEeCCCC-CchhhHHHHHHHHHHHhC-----CCCeEEEehhhH
Confidence 34778899999999999999875432 2799999999999 454444444556666665 399999999999
Q ss_pred HHHHHHcCccc
Q 039121 164 LLSMIVSEDRN 174 (232)
Q Consensus 164 lL~~~~GG~~~ 174 (232)
+|+.+.|+++.
T Consensus 252 llA~AaGakT~ 262 (1435)
T KOG0370|consen 252 LLALAAGAKTY 262 (1435)
T ss_pred HHHHhhCCceE
Confidence 99999999863
No 77
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=4.1e-09 Score=100.05 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=81.2
Q ss_pred chhhhHHHHHHHHHhC-CCe-EEEEeCCCChHHHHHhhcC---CCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCc
Q 039121 79 NASYISASYVKFAESG-GAR-VIPLIFNEPEEILFEKLEL---VNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHF 153 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~-G~~-vv~i~~~~~~e~l~~~l~~---~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (232)
+++|- -++++.++.. |.. |+++..+..-++.-+.+.+ +|+||+..||+.+ .-.+...++.+.++.+ +++
T Consensus 23 YDSyT-fNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P--~~a~d~gI~~rl~~~~---~~i 96 (767)
T KOG1224|consen 23 YDSYT-FNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSP--MCAADIGICLRLLLEC---RDI 96 (767)
T ss_pred ccchh-hhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCC--CcHHHHHHHHHHHHhc---CCC
Confidence 44553 3677888775 333 3344443333333333444 8999999999843 2122223444444332 379
Q ss_pred cEeehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceeee
Q 039121 154 PVYAICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKLC 228 (232)
Q Consensus 154 PILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~~ 228 (232)
||||||+|||.|+.+.|..+. ....+.|++...++...+.. -+-++.+-|+++ -.+.+||..+..
T Consensus 97 PilGICLGfQal~l~hGA~v~-~~n~p~HGrvs~i~~~~~~~-f~gi~sg~~~~f--------K~~RYHSL~in~ 161 (767)
T KOG1224|consen 97 PILGICLGFQALGLVHGAHVV-HANEPVHGRVSGIEHDGNIL-FSGIPSGRNSDF--------KVVRYHSLIINS 161 (767)
T ss_pred ceeeeehhhHhHhhhccccee-cCCCcccceeeeEEecCcEE-EccCCCCCcccc--------eeEEeEEEEecC
Confidence 999999999999999999865 33445677777666643322 233444445555 367788877643
No 78
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.95 E-value=1.1e-08 Score=88.50 Aligned_cols=91 Identities=21% Similarity=0.383 Sum_probs=61.6
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHH-hCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCc-----cC
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAE-SGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSG-----LY 132 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~-~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~-----~~ 132 (232)
.|+|+..++..+ ..+..++++ .+|+.+..++.... .++.+|+||||||..... ..
T Consensus 2 ~v~Vl~~~G~n~-------------~~d~~~a~~~~~G~~~~~v~~~~~------~l~~~D~lvipGG~~~~d~l~~~~~ 62 (219)
T PRK03619 2 KVAVIVFPGSNC-------------DRDMARALRDLLGAEPEYVWHKET------DLDGVDAVVLPGGFSYGDYLRCGAI 62 (219)
T ss_pred EEEEEecCCcCh-------------HHHHHHHHHhcCCCeEEEEecCcC------CCCCCCEEEECCCCchhhhhccchh
Confidence 478888887532 345677898 89999888765321 266899999999965211 00
Q ss_pred --hhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH--HcCcc
Q 039121 133 --YDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI--VSEDR 173 (232)
Q Consensus 133 --~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~--~GG~~ 173 (232)
.....+.++...+ +++|++|||.|+|+|+.+ ++|++
T Consensus 63 ~~~~~~~~~l~~~~~-----~g~~ilgIC~G~qlLa~~GLL~g~l 102 (219)
T PRK03619 63 AAFSPIMKAVKEFAE-----KGKPVLGICNGFQILTEAGLLPGAL 102 (219)
T ss_pred hhchHHHHHHHHHHH-----CCCEEEEECHHHHHHHHcCCCCCeE
Confidence 1123344444443 469999999999999996 67763
No 79
>PLN02327 CTP synthase
Probab=98.88 E-value=1.1e-08 Score=98.48 Aligned_cols=99 Identities=20% Similarity=0.294 Sum_probs=64.4
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC----CCeEEEEeCCCCh---HH----------HHHhhcCCCE
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESG----GARVIPLIFNEPE---EI----------LFEKLELVNG 119 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~----G~~vv~i~~~~~~---e~----------l~~~l~~~dG 119 (232)
.-.||+..-... ..+.|. |+.++|+.+ +..+.+.+.+.+. +. +.+.++.+||
T Consensus 297 ~v~IalVGKY~~---------l~DAY~--Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DG 365 (557)
T PLN02327 297 PVRIAMVGKYTG---------LSDSYL--SVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADG 365 (557)
T ss_pred ceEEEEEecccC---------CcHhHH--HHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCE
Confidence 346888886432 245564 777777776 4566555544321 11 2245788999
Q ss_pred EEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 120 ILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 120 lIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
|++|||+.... ..+. ...++++.+. ++|+||||+|||+++..+++++
T Consensus 366 IvvpGGfG~~~-~~G~-i~ai~~are~-----~iP~LGIClGmQl~viefaRnv 412 (557)
T PLN02327 366 ILVPGGFGDRG-VEGK-ILAAKYAREN-----KVPYLGICLGMQIAVIEFARSV 412 (557)
T ss_pred EEeCCCCCCcc-cccH-HHHHHHHHHc-----CCCEEEEcHHHHHHHHHHHHhh
Confidence 99999985321 1112 2345666554 5999999999999999999875
No 80
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=98.87 E-value=1.2e-08 Score=86.85 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=70.0
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCC---CCccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWA---KSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~---~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
-++..+.+-|-.....++....---++.++++||+++||... .+.+|...+..+++..... +++|+|||.||
T Consensus 29 vfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~m-----kkkvlGICFGH 103 (245)
T KOG3179|consen 29 VFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFM-----KKKVLGICFGH 103 (245)
T ss_pred HHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhh-----ccceEEEeccH
Confidence 345566666655544432211000023367899999999764 3456777777888877766 49999999999
Q ss_pred HHHHHHHcCcccccccccC---CCceEeEEEeecCCCCCCCCcCCChhH
Q 039121 163 ELLSMIVSEDRNILETFDR---ANQASTLQFVKNINIEGTLFQRFPPEL 208 (232)
Q Consensus 163 QlL~~~~GG~~~il~~~~~---e~~~~pl~~~~~~~~~s~LF~~lp~~l 208 (232)
|+++.+.||++ .+.+... ++...-++.+. . ...+|..+|..+
T Consensus 104 Qiiara~Gg~V-gra~KG~~~~lg~itivk~~~--~-~~~yFG~~~~~l 148 (245)
T KOG3179|consen 104 QIIARAKGGKV-GRAPKGPDLGLGSITIVKDAE--K-PEKYFGEIPKSL 148 (245)
T ss_pred HHHHHhhCCcc-ccCCCCCcccccceEEEEecc--c-chhhcccchhhh
Confidence 99999999995 3443332 23222233322 2 456777655443
No 81
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.77 E-value=2.8e-08 Score=93.88 Aligned_cols=98 Identities=22% Similarity=0.352 Sum_probs=64.1
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCC----eEEEEeCCCCh---HHHHHhhcCCCEEEECCCCCCCc
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGA----RVIPLIFNEPE---EILFEKLELVNGILYTGGWAKSG 130 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~----~vv~i~~~~~~---e~l~~~l~~~dGlIl~GG~~~~~ 130 (232)
-.||+..-..+ ..++|. |++++|+.+|+ .+.+.+.+... ++.......+|||++|||.+..+
T Consensus 289 v~IalVGKYv~---------l~DaY~--Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~RG 357 (533)
T COG0504 289 VTIALVGKYVE---------LPDAYK--SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYRG 357 (533)
T ss_pred eEEEEEECCcC---------chhHHH--HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcCc
Confidence 45999887543 346675 88889988764 55555544321 11112211299999999998433
Q ss_pred cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 131 LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
. ..-...+++|.+. ++|+||||+|||++...+..++
T Consensus 358 ~--eGkI~Ai~yAREn-----~iP~lGIClGmQ~aviE~ARnv 393 (533)
T COG0504 358 V--EGKIAAIRYAREN-----NIPFLGICLGMQLAVIEFARNV 393 (533)
T ss_pred h--HHHHHHHHHHHhc-----CCCEEEEchhHHHHHHHHHHHh
Confidence 1 1122456777766 5999999999999998775543
No 82
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=98.71 E-value=4.9e-08 Score=88.24 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=58.4
Q ss_pred cCCCEEEECCCCCC-----CccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcccccccccCCCceEeEE
Q 039121 115 ELVNGILYTGGWAK-----SGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDRANQASTLQ 189 (232)
Q Consensus 115 ~~~dGlIl~GG~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~ 189 (232)
+.+||+|+||.+.. +..|..+..++++++.+. .+|+||||.|+|+++.++||.. ....-...-+..+..
T Consensus 98 ~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~-----~~s~LgICwGaQa~a~algGi~-k~~~~~K~~Gv~~~~ 171 (302)
T PRK05368 98 EKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTH-----VTSTLFICWAAQAALYHLYGIP-KYTLPEKLSGVFEHR 171 (302)
T ss_pred CCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHc-----CCCEEEEcHHHHHHHHHcCCCc-cCCCCCceeEEEEEE
Confidence 47899999999853 345566788888888764 5999999999999999999952 111111222222333
Q ss_pred EeecCCCCCCCCcCCChhHH
Q 039121 190 FVKNINIEGTLFQRFPPELL 209 (232)
Q Consensus 190 ~~~~~~~~s~LF~~lp~~l~ 209 (232)
.+. . .++|++++++.+.
T Consensus 172 ~~~--~-~~pL~~g~~d~F~ 188 (302)
T PRK05368 172 VLD--P-HHPLLRGFDDSFL 188 (302)
T ss_pred EcC--C-CChhhcCCCCccc
Confidence 321 2 5678998887664
No 83
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.70 E-value=3.4e-08 Score=83.66 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccCh----hHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYY----DIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~----~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.++.++++..|++++.++...+ ++.+|+|||+||........ ...++.++.+++ +++||||||.
T Consensus 13 ~~l~~~~~~~G~~~~~~~~~~~-------~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~-----~g~pvlgiC~ 80 (194)
T cd01750 13 TDLDPLAREPGVDVRYVEVPEG-------LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYAR-----AGGPVLGICG 80 (194)
T ss_pred HHHHHHHhcCCceEEEEeCCCC-------CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHH-----CCCcEEEECH
Confidence 4666788899999998876443 45789999999985221111 113344444443 3699999999
Q ss_pred HHHHHHHHH
Q 039121 161 GFELLSMIV 169 (232)
Q Consensus 161 G~QlL~~~~ 169 (232)
|||+|+..+
T Consensus 81 G~qlL~~~~ 89 (194)
T cd01750 81 GYQMLGKYI 89 (194)
T ss_pred HHHHhhhhc
Confidence 999999987
No 84
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.69 E-value=4.1e-08 Score=83.45 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCC-ccChhH---HHHHHHHHHHhcCCCCCccEee
Q 039121 82 YISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKS-GLYYDI---VEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~-~~~~~~---~~~~~~~~l~~~~~~~~~PILG 157 (232)
+.-....+.|+++|++++.+....+ ++ +..+|+||||||.... ...... ..+.++.+.+ +++||+|
T Consensus 11 f~y~e~~~~l~~~G~~v~~~s~~~~-~~----l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~-----~g~pilg 80 (198)
T cd03130 11 FYYPENLELLEAAGAELVPFSPLKD-EE----LPDADGLYLGGGYPELFAEELSANQSMRESIRAFAE-----SGGPIYA 80 (198)
T ss_pred cccHHHHHHHHHCCCEEEEECCCCC-CC----CCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHH-----cCCCEEE
Confidence 3345677889999999988764212 22 3459999999986421 111111 2233444433 4699999
Q ss_pred hhHHHHHHHHHH
Q 039121 158 ICLGFELLSMIV 169 (232)
Q Consensus 158 IClG~QlL~~~~ 169 (232)
||.|||+|+...
T Consensus 81 ICgG~qlL~~~~ 92 (198)
T cd03130 81 ECGGLMYLGESL 92 (198)
T ss_pred EcccHHHHHHHh
Confidence 999999999976
No 85
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.66 E-value=1.4e-08 Score=90.02 Aligned_cols=93 Identities=23% Similarity=0.374 Sum_probs=57.0
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChh--
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYD-- 134 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~-- 134 (232)
||.++|+..|+.++ +.....+++.+|+++..+..+.-. .-+..++.+|+|+||||... .++..
T Consensus 1 kpkV~Vl~~pGtNc-------------e~e~~~A~~~aG~~~~~v~~~dl~-~~~~~l~~~~~lvipGGFS~-gD~l~sg 65 (259)
T PF13507_consen 1 KPKVAVLRFPGTNC-------------ERETAAAFENAGFEPEIVHINDLL-SGESDLDDFDGLVIPGGFSY-GDYLRSG 65 (259)
T ss_dssp --EEEEEE-TTEEE-------------HHHHHHHHHCTT-EEEEEECCHHH-TTS--GCC-SEEEE-EE-GG-GGTTSTT
T ss_pred CCEEEEEECCCCCC-------------HHHHHHHHHHcCCCceEEEEEecc-cccCchhhCcEEEECCccCc-cccchHH
Confidence 68999999998654 346777899999999988764210 01124789999999999762 11111
Q ss_pred -----------HHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 135 -----------IVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 135 -----------~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
..++.++..+++ +++++||||.|||+|.+.
T Consensus 66 ~~~a~~~~~~~~~~~~i~~f~~~----~g~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 66 AIAAARLLFNSPLMDAIREFLER----PGGFVLGICNGFQILVEL 106 (259)
T ss_dssp HHHHHHHCCSCCCHHHHHHHHHC----TT-EEEEECHHHHHHCCC
T ss_pred HHHHHHhhccHHHHHHHHHHHhc----CCCeEEEEchHhHHHHHh
Confidence 123444555543 379999999999999884
No 86
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=98.52 E-value=2.7e-07 Score=84.07 Aligned_cols=119 Identities=16% Similarity=0.205 Sum_probs=68.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECC-CCCC---CccChhHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTG-GWAK---SGLYYDIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~G-G~~~---~~~~~~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
+|+.+++++.|..+..+.. +.+ +...|.+|||| |..- +........+-+++.++ .++|++|||.
T Consensus 15 ~si~nal~hlg~~i~~v~~---P~D----I~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~Yie-----sgkPfmgicv 82 (541)
T KOG0623|consen 15 RSIRNALRHLGFSIKDVQT---PGD----ILNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIE-----SGKPFMGICV 82 (541)
T ss_pred HHHHHHHHhcCceeeeccC---chh----hccCceEeecCcccchHHHHHHhhhhhHHHHHHHHh-----cCCCeEeehh
Confidence 5777899999998877643 333 55899999999 6641 11110111122333333 3699999999
Q ss_pred HHHHHHHHH--cCccc-------ccccccCCCceEe-EEEeec-CCCCCCCCcCCChhHHhhhcCCccceEeecc
Q 039121 161 GFELLSMIV--SEDRN-------ILETFDRANQAST-LQFVKN-INIEGTLFQRFPPELLKKLSTDCLVMQNHHV 224 (232)
Q Consensus 161 G~QlL~~~~--GG~~~-------il~~~~~e~~~~p-l~~~~~-~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~ 224 (232)
|.|+|..-. .+... ++.+|+...+..| +.|..- ...++.+|...| ...+||+|||
T Consensus 83 GlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~sd~effg~~p---------~~~~YFVHSy 148 (541)
T KOG0623|consen 83 GLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGSDSEFFGDVP---------NRHVYFVHSY 148 (541)
T ss_pred hHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccccccCCcccccccCC---------CceEEEEeee
Confidence 999997621 11111 1233443333233 235431 122445665555 3458999999
No 87
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.45 E-value=2.1e-07 Score=78.10 Aligned_cols=85 Identities=26% Similarity=0.413 Sum_probs=57.1
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCC-CeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCc-cChhH-
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGG-ARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSG-LYYDI- 135 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G-~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~-~~~~~- 135 (232)
.|||++-+++- ...++.+++++ +.++.+.. +++ ++.+||||||||....- .....
T Consensus 2 ~IGVLalQG~v---------------~EH~~~l~~~~~~e~~~Vk~---~~d----L~~~d~LIiPGGESTTi~rL~~~~ 59 (194)
T COG0311 2 KIGVLALQGAV---------------EEHLEALEKAGGAEVVEVKR---PED----LEGVDGLIIPGGESTTIGRLLKRY 59 (194)
T ss_pred eEEEEEecccH---------------HHHHHHHHhhcCCceEEEcC---HHH----hccCcEEEecCccHHHHHHHHHHc
Confidence 68999987741 35677899995 88888753 343 67899999999987211 00000
Q ss_pred -HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHc
Q 039121 136 -VEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVS 170 (232)
Q Consensus 136 -~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~G 170 (232)
..+-++.... +++|+||+|-||-+|+...-
T Consensus 60 gl~e~l~~~~~-----~G~Pv~GTCAGlIlLakei~ 90 (194)
T COG0311 60 GLLEPLREFIA-----DGLPVFGTCAGLILLAKEIL 90 (194)
T ss_pred CcHHHHHHHHH-----cCCceEEechhhhhhhhhhc
Confidence 1122333333 36999999999999997543
No 88
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.43 E-value=1.1e-06 Score=91.94 Aligned_cols=96 Identities=22% Similarity=0.349 Sum_probs=65.3
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC--------ChHHHHHhhcCCCEEEECCCC
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE--------PEEILFEKLELVNGILYTGGW 126 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~--------~~e~l~~~l~~~dGlIl~GG~ 126 (232)
..||.++|+..|+.++ .....++++.+|+.+..+..+. +.+++...++.+++|++|||.
T Consensus 975 ~~kpkvaIl~~pGtNc-------------e~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGF 1041 (1239)
T TIGR01857 975 VEKPRVVIPVFPGTNS-------------EYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGF 1041 (1239)
T ss_pred CCCCeEEEEECCCCCC-------------HHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCcc
Confidence 3589999999998765 2356677989999988777543 111222336889999999997
Q ss_pred CCCc------cCh------hHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 127 AKSG------LYY------DIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 127 ~~~~------~~~------~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.... .|. ...++.++..++ ++.++||||.|||+|...
T Consensus 1042 SyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~-----~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857 1042 SAGDEPDGSAKFIAAILRNPKVRVAIDSFLA-----RDGLILGICNGFQALVKS 1090 (1239)
T ss_pred CcccccchhHHHHHHHhhChHHHHHHHHHHh-----CCCcEEEechHHHHHHHc
Confidence 6211 111 113333444433 579999999999999885
No 89
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.41 E-value=1.4e-06 Score=81.73 Aligned_cols=98 Identities=23% Similarity=0.368 Sum_probs=61.7
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCC----eEEEEeCCC----------ChH---HHHHhhcCCCEE
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGA----RVIPLIFNE----------PEE---ILFEKLELVNGI 120 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~----~vv~i~~~~----------~~e---~l~~~l~~~dGl 120 (232)
-.|++..-.-. ..++|+ |++++|+.++. .+.+.+.++ ++. ..=+++..+|||
T Consensus 299 V~IalVGKYt~---------l~DsY~--Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGi 367 (585)
T KOG2387|consen 299 VRIALVGKYTK---------LSDSYL--SVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGI 367 (585)
T ss_pred EEEEEEecccc---------chHHHH--HHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeE
Confidence 34888876432 356785 89999988643 333333332 111 112345679999
Q ss_pred EECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 121 LYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 121 Il~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
++|||.+..+- .-.....++|.+. ++|.||||+|||+-...|..++
T Consensus 368 lvPGGFG~RGv--eG~i~Aak~ARen-----~iP~LGiCLGmQ~AvIEfaRnv 413 (585)
T KOG2387|consen 368 LVPGGFGDRGV--EGKILAAKWAREN-----KIPFLGICLGMQLAVIEFARNV 413 (585)
T ss_pred EeCCcccccch--hHHHHHHHHHHhc-----CCCeEeeehhhhHHHHHHHHHh
Confidence 99999984331 1112335566554 6999999999999988776553
No 90
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.39 E-value=8.6e-07 Score=74.35 Aligned_cols=85 Identities=8% Similarity=0.049 Sum_probs=58.3
Q ss_pred hcCCCEEEECCCCCC-----CccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcccccccccCCCceEeE
Q 039121 114 LELVNGILYTGGWAK-----SGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDRANQASTL 188 (232)
Q Consensus 114 l~~~dGlIl~GG~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl 188 (232)
.+.+||+|+||.+-. +-.|.++.+++++++.+. .+|+||||.|+|+...+++|......+ .+..+-.+.
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~-----v~stl~iCWgaqaal~~~yGi~k~~~~-~K~~Gvf~~ 133 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTH-----VTSTLFSCWAAMAALYYFYGIKKHQLP-EKIFGVFPH 133 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHcCcccccCC-CceEEEEEe
Confidence 468999999999862 235667888999998765 499999999999999999997311111 111111222
Q ss_pred EEeecCCCCCCCCcCCChhH
Q 039121 189 QFVKNINIEGTLFQRFPPEL 208 (232)
Q Consensus 189 ~~~~~~~~~s~LF~~lp~~l 208 (232)
+.. . .++|++++++.+
T Consensus 134 ~~~---~-~hpL~~g~~d~F 149 (175)
T cd03131 134 TIL---E-PHPLLRGLDDGF 149 (175)
T ss_pred eec---C-CCccccCCCCce
Confidence 222 1 578999988765
No 91
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.37 E-value=6.4e-07 Score=85.70 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=44.5
Q ss_pred HHHHHHHhCCC-eEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHH
Q 039121 86 SYVKFAESGGA-RVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFEL 164 (232)
Q Consensus 86 s~v~~l~~~G~-~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Ql 164 (232)
|.+++++.+|. .+.++..+ ++++ +..+|+||||||...... ....-+..++.+. ++||||||.|||+
T Consensus 10 sv~~al~~lg~~~~~vv~~~-~~~~----l~~~D~lILPGG~~~~~~---~l~~~l~~~i~~~----g~pvlGICgG~Qm 77 (476)
T PRK06278 10 GSLPCFENFGNLPTKIIDEN-NIKE----IKDLDGLIIPGGSLVESG---SLTDELKKEILNF----DGYIIGICSGFQI 77 (476)
T ss_pred hHHHHHHHhcCCCcEEEEeC-ChHH----hccCCEEEECCCchhhcc---hHHHHHHHHHHHc----CCeEEEEcHHHHh
Confidence 44556777776 45554433 3333 578999999998642111 0112222333221 6999999999999
Q ss_pred HHHHH
Q 039121 165 LSMIV 169 (232)
Q Consensus 165 L~~~~ 169 (232)
|+...
T Consensus 78 Lg~~~ 82 (476)
T PRK06278 78 LSEKI 82 (476)
T ss_pred ccccc
Confidence 99874
No 92
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.37 E-value=1.8e-06 Score=90.82 Aligned_cols=96 Identities=15% Similarity=0.277 Sum_probs=66.0
Q ss_pred CCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccCh
Q 039121 54 LNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYY 133 (232)
Q Consensus 54 ~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~ 133 (232)
...||.++|+..|+.++ ......+++.+|+.+..+..+.-.+ -...++.++||+++||... +.+.
T Consensus 1034 ~~~~pkVaVl~~pGtN~-------------~~e~~~Af~~aGf~~~~V~~~dl~~-~~~~L~~~~glv~pGGFSy-GD~l 1098 (1307)
T PLN03206 1034 ATSKPKVAIIREEGSNG-------------DREMAAAFYAAGFEPWDVTMSDLLN-GRISLDDFRGIVFVGGFSY-ADVL 1098 (1307)
T ss_pred CCCCCeEEEEECCCCCC-------------HHHHHHHHHHcCCceEEEEeeeccc-ccccccceeEEEEcCcCCC-cccc
Confidence 34689999999998765 2466678999999988877643111 1223678999999999752 1111
Q ss_pred h-------------HHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 134 D-------------IVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 134 ~-------------~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+ ..++.++..++ +++.++||||.|||+|...
T Consensus 1099 ~sg~~wa~~i~~n~~~~~~~~~f~~----~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1099 DSAKGWAGSIRFNEPLLQQFQEFYN----RPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred chHHHHHHHHHhChHHHHHHHHHHh----CCCceEEEEcHHHHHHHHc
Confidence 1 12334444443 4579999999999999885
No 93
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.26 E-value=3.6e-06 Score=88.85 Aligned_cols=94 Identities=17% Similarity=0.261 Sum_probs=63.6
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChh
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYD 134 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~ 134 (232)
.++|.++|+..|+.++ ......+++.+|+.+..+..+.-.+. +..++.++||+++||... +.+.+
T Consensus 1053 ~~~p~vail~~pG~N~-------------~~e~~~Af~~aGf~~~~v~~~dl~~~-~~~l~~~~~lv~~GGFSy-gD~lg 1117 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNG-------------DREMAAAFDRAGFEAWDVHMSDLLAG-RVHLDEFRGLAACGGFSY-GDVLG 1117 (1310)
T ss_pred CCCceEEEEECCCCCC-------------HHHHHHHHHHhCCCcEEEEEeccccC-CcchhheeEEEEcCCCCC-ccchh
Confidence 4689999999998764 23556679999999888875431110 112567899999999752 11222
Q ss_pred H-------------HHHHHHHHHHhcCCCCCccEeehhHHHHHHHH
Q 039121 135 I-------------VEKIFKKILEKNDAGDHFPVYAICLGFELLSM 167 (232)
Q Consensus 135 ~-------------~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~ 167 (232)
. .++.++..+ ..++.++||||.|||+|..
T Consensus 1118 sg~~~a~~i~~~~~~~~~~~~f~----~~~d~~~LGiCNGfQ~L~~ 1159 (1310)
T TIGR01735 1118 AGKGWAKSILFNPRLRDQFQAFF----KRPDTFSLGVCNGCQMLSN 1159 (1310)
T ss_pred HHHHHHHHHHhChHHHHHHHHHH----hCCCceEEEecHHHHHHHH
Confidence 1 233333333 2568999999999999993
No 94
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.21 E-value=5.7e-06 Score=87.38 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=64.4
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhH
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDI 135 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~ 135 (232)
.+|.++|+..|+.++ ......+++.+|+.+..+..+.-.+. ...++.+++|+++||... ..+.+.
T Consensus 1034 ~~pkv~il~~pG~N~-------------~~e~~~Af~~aG~~~~~v~~~dl~~~-~~~l~~~~~l~~~GGFS~-gD~lgs 1098 (1290)
T PRK05297 1034 ARPKVAILREQGVNS-------------HVEMAAAFDRAGFDAIDVHMSDLLAG-RVTLEDFKGLVACGGFSY-GDVLGA 1098 (1290)
T ss_pred CCCeEEEEECCCCCC-------------HHHHHHHHHHcCCCeEEEEeecCcCC-CCChhhCcEEEECCccCC-cccchH
Confidence 579999999998765 24566789999999887775421100 123678999999999762 112222
Q ss_pred -------------HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 136 -------------VEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 136 -------------~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.++.++..+ ..++.++||||.|||+|...
T Consensus 1099 g~~~a~~~~~n~~~~~~~~~f~----~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1099 GEGWAKSILFNPRLRDQFEAFF----ARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHHHHHHhhccHHHHHHHHHHH----hCCCceEEEEcHHHHHHHHh
Confidence 223333333 34689999999999999985
No 95
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=98.20 E-value=8.2e-07 Score=74.93 Aligned_cols=74 Identities=23% Similarity=0.349 Sum_probs=44.6
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCc-cChh--HHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSG-LYYD--IVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
...+.|+++|++++.++. +++ ++.+||||+|||....- .... ...+.++..... .++||||+|-||
T Consensus 10 EH~~~l~~lg~~~~~Vr~---~~d----L~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~----g~~Pv~GTCAGl 78 (188)
T PF01174_consen 10 EHIRMLERLGAEVVEVRT---PED----LEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRS----GSKPVWGTCAGL 78 (188)
T ss_dssp HHHHHHHHTTSEEEEE-S---GGG----GTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHT----T--EEEEETHHH
T ss_pred HHHHHHHHcCCCeEEeCC---HHH----HccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHc----CCCceeehhHHH
Confidence 556789999999988763 333 67899999999986210 0100 122333333332 139999999999
Q ss_pred HHHHHHHc
Q 039121 163 ELLSMIVS 170 (232)
Q Consensus 163 QlL~~~~G 170 (232)
-+|+....
T Consensus 79 IlLa~~v~ 86 (188)
T PF01174_consen 79 ILLAKEVE 86 (188)
T ss_dssp HHHEEEEC
T ss_pred HHhhhhhh
Confidence 99998543
No 96
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.16 E-value=5.8e-06 Score=70.94 Aligned_cols=95 Identities=20% Similarity=0.149 Sum_probs=63.6
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC-CCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChh
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESG-GARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYD 134 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~-G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~ 134 (232)
.++.|.+...... ....|+ .++.++++++ |++++.+.... .++..+.++.+|+|+|+||... .+..
T Consensus 30 ~~~~i~~IptAs~---------~~~~~~-~~~~~a~~~l~G~~~~~~~~~~-~~~~~~~l~~ad~I~l~GG~~~--~~~~ 96 (212)
T cd03146 30 ARPKVLFVPTASG---------DRDEYT-ARFYAAFESLRGVEVSHLHLFD-TEDPLDALLEADVIYVGGGNTF--NLLA 96 (212)
T ss_pred CCCeEEEECCCCC---------CHHHHH-HHHHHHHhhccCcEEEEEeccC-cccHHHHHhcCCEEEECCchHH--HHHH
Confidence 4577888876543 134454 4788999999 99888776432 2333455789999999998641 1111
Q ss_pred H-----HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 135 I-----VEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 135 ~-----~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
. ..+.++.+++ +++|++|||.|+|++...
T Consensus 97 ~l~~~~l~~~l~~~~~-----~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 97 QWREHGLDAILKAALE-----RGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHcCHHHHHHHHHH-----CCCEEEEECHhHHhhCCC
Confidence 1 2233444333 469999999999999984
No 97
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.10 E-value=9.8e-06 Score=58.57 Aligned_cols=76 Identities=21% Similarity=0.251 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccC--hhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLY--YDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~--~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
..+.+.+++++..+.+++..............+|+|+++||....... .....+.++....+ ++|++|+|.|+
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~-----~~~i~~~c~g~ 89 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAA-----GKPILGICLGA 89 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHc-----CCEEEEECchh
Confidence 467778999999999888654321101224579999999988743322 12333445554443 59999999999
Q ss_pred HHH
Q 039121 163 ELL 165 (232)
Q Consensus 163 QlL 165 (232)
|++
T Consensus 90 ~~l 92 (115)
T cd01653 90 QLL 92 (115)
T ss_pred HhH
Confidence 999
No 98
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.09 E-value=1.4e-05 Score=75.87 Aligned_cols=91 Identities=18% Similarity=0.259 Sum_probs=59.7
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC--CccCh-
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK--SGLYY- 133 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~--~~~~~- 133 (232)
++.|||...+.- + ..| ....+.|++.|++++.+....+ ++ +..+|+|+||||... ...+.
T Consensus 245 ~~~iava~d~af-------~---f~y--~e~~~~L~~~g~~~~~~~~~~~-~~----l~~~D~lilpGG~~~~~~~~l~~ 307 (451)
T PRK01077 245 GVRIAVARDAAF-------N---FYY--PENLELLRAAGAELVFFSPLAD-EA----LPDCDGLYLGGGYPELFAAELAA 307 (451)
T ss_pred CceEEEEecCcc-------c---ccH--HHHHHHHHHCCCEEEEeCCcCC-CC----CCCCCEEEeCCCchhhHHHHHhh
Confidence 468999887621 1 112 3556778999999988764222 22 457899999999641 11111
Q ss_pred -hHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHH
Q 039121 134 -DIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIV 169 (232)
Q Consensus 134 -~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~ 169 (232)
....+.++.+.++ ++||+|||-|+|+|+..+
T Consensus 308 ~~~~~~~i~~~~~~-----g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 308 NTSMRASIRAAAAA-----GKPIYAECGGLMYLGESL 339 (451)
T ss_pred CchhHHHHHHHHHc-----CCCEEEEcHHHHHHHhhh
Confidence 1133455555543 599999999999999987
No 99
>PRK00784 cobyric acid synthase; Provisional
Probab=98.06 E-value=6.4e-06 Score=79.03 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=48.1
Q ss_pred HHHHHHHh-CCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCc--cChhH--HHHHHHHHHHhcCCCCCccEeehhH
Q 039121 86 SYVKFAES-GGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSG--LYYDI--VEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 86 s~v~~l~~-~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~--~~~~~--~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.-.+.|++ +|++++.+.. .++ +..+|+|+||||..... .+... .++.++.+.++ ++||||||.
T Consensus 266 ~nl~~l~~~~g~~v~~~s~---~~~----l~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~-----g~pilg~C~ 333 (488)
T PRK00784 266 TDFDPLRAEPGVDVRYVRP---GEP----LPDADLVILPGSKNTIADLAWLRESGWDEAIRAHARR-----GGPVLGICG 333 (488)
T ss_pred cChHHHhhcCCCeEEEECC---ccc----cccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHc-----CCeEEEECH
Confidence 34456777 8999888753 222 55799999999875211 11111 23344444443 699999999
Q ss_pred HHHHHHHHH
Q 039121 161 GFELLSMIV 169 (232)
Q Consensus 161 G~QlL~~~~ 169 (232)
|||+|+...
T Consensus 334 G~~~L~~~~ 342 (488)
T PRK00784 334 GYQMLGRRI 342 (488)
T ss_pred HHHHHhhhc
Confidence 999999976
No 100
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.92 E-value=5e-05 Score=79.94 Aligned_cols=94 Identities=14% Similarity=0.144 Sum_probs=64.4
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC-hHHHHHhhcCCCEEEECCCCCC-Ccc-
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP-EEILFEKLELVNGILYTGGWAK-SGL- 131 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~-~e~l~~~l~~~dGlIl~GG~~~-~~~- 131 (232)
..||.|.|+..|+.++ ..+...+++.+|+.+..+..+.- ... .++.++||+++||... +..
T Consensus 927 ~~~p~VaIl~~pG~N~-------------~~e~~~Af~~aGf~~~~v~~~dl~~~~---~l~~f~glv~~Ggfsy~D~lg 990 (1202)
T TIGR01739 927 DPRHQVAVLLLPGQSV-------------PHGLLAALTNAGFDPRIVSITELKKTD---FLDTFSGLIIGGASGTLDSEV 990 (1202)
T ss_pred CCCCeEEEEeCCCCCC-------------HHHHHHHHHHcCCceEEEEeccCCCCC---chhheEEEEEcCcCCCCccch
Confidence 4589999999998754 24666789999999988875431 111 2467899999998762 111
Q ss_pred ----Ch------hHHHHHHHHHHHhcCCCCCccEeehhH-HHHHHHHH
Q 039121 132 ----YY------DIVEKIFKKILEKNDAGDHFPVYAICL-GFELLSMI 168 (232)
Q Consensus 132 ----~~------~~~~~~~~~~l~~~~~~~~~PILGICl-G~QlL~~~ 168 (232)
|. ...++.++..+. .++.++||||. |+|+|...
T Consensus 991 sg~~~a~~il~n~~~~~~~~~f~~----r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 991 GARALAAALLRNQAFLRDLLTFLN----RPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHh----CCCceEEEeCcHHHHHHHHc
Confidence 11 123344444443 45899999998 99999984
No 101
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.92 E-value=2.8e-05 Score=73.98 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=59.2
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC--CccCh-
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK--SGLYY- 133 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~--~~~~~- 133 (232)
++.|||.-.+- + ...| +.-.+.|++.|++++.+....+. + +..+|+|+||||... ...+.
T Consensus 244 ~~~Iava~d~a-------f---nFy~--~~~~~~L~~~g~~~~~~~~~~d~-~----l~~~d~l~ipGG~~~~~~~~l~~ 306 (449)
T TIGR00379 244 YVRIAVAQDQA-------F---NFYY--QDNLDALTHNAAELVPFSPLEDT-E----LPDVDAVYIGGGFPELFAEELSQ 306 (449)
T ss_pred CcEEEEEechh-------h---ceeH--HHHHHHHHHCCCEEEEECCccCC-C----CCCCCEEEeCCcHHHHHHHHHHh
Confidence 46899887642 1 1223 56677899999999888653222 2 457899999999741 11111
Q ss_pred -hHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHH
Q 039121 134 -DIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIV 169 (232)
Q Consensus 134 -~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~ 169 (232)
...++.++.+.+ ++.||||||-|||+|+..+
T Consensus 307 ~~~~~~~i~~~~~-----~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 307 NQALRDSIKTFIH-----QGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred hhHHHHHHHHHHH-----cCCCEEEEcHHHHHHHhhh
Confidence 012233444443 3699999999999999976
No 102
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.89 E-value=2.9e-05 Score=53.58 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=48.7
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccC--hhHHHHHHHHHHHhcCCCCCccEeehhHHHH
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLY--YDIVEKIFKKILEKNDAGDHFPVYAICLGFE 163 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~--~~~~~~~~~~~l~~~~~~~~~PILGIClG~Q 163 (232)
.+.+.+++.+..+.+++.............++|+||++||....... .....+.+.....+ ++|++|+|.|+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~g~~ 90 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAA-----GKPVLGICLGAQ 90 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHc-----CCEEEEEecccc
Confidence 56667889999888887655432111224589999999998743322 12233334443333 599999999998
Q ss_pred HH
Q 039121 164 LL 165 (232)
Q Consensus 164 lL 165 (232)
++
T Consensus 91 ~~ 92 (92)
T cd03128 91 LL 92 (92)
T ss_pred cC
Confidence 74
No 103
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=97.88 E-value=3.9e-05 Score=63.86 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=54.8
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC------CCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCc
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESG------GARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSG 130 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~------G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~ 130 (232)
..||||++-++. +|.+ ++.++++ +....+.+. .++++ ++++||+|+|||....-
T Consensus 11 n~VIGVLALQGA-------------FiEH--~N~~~~c~~en~y~Ik~~~~tV-KT~~D----~aq~DaLIIPGGEST~m 70 (226)
T KOG3210|consen 11 NVVIGVLALQGA-------------FIEH--VNHVEKCIVENRYEIKLSVMTV-KTKND----LAQCDALIIPGGESTAM 70 (226)
T ss_pred ceEEeeeehhhH-------------HHHH--HHHHHHhhccCcceEEEEEEee-cCHHH----HhhCCEEEecCCchhHH
Confidence 478999998653 3422 2334422 233333343 24443 67899999999987221
Q ss_pred cCh---hHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCc
Q 039121 131 LYY---DIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSED 172 (232)
Q Consensus 131 ~~~---~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~ 172 (232)
... ..+++-+...... ..+|+||.|-||-+|+..+.|.
T Consensus 71 slia~~tgL~d~L~~fVhn----~~k~~WGTCAGmI~LS~ql~ne 111 (226)
T KOG3210|consen 71 SLIAERTGLYDDLYAFVHN----PSKVTWGTCAGMIYLSQQLSNE 111 (226)
T ss_pred HHHHhhhhhHHHHHHHhcC----CCccceeechhhhhhhhhhcCC
Confidence 111 1133333333332 3599999999999999877553
No 104
>PHA03366 FGAM-synthase; Provisional
Probab=97.87 E-value=4.9e-05 Score=80.50 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=65.2
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCC-Cc--
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAK-SG-- 130 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~-~~-- 130 (232)
..||.+.|+..|+.++ ..+...+++.+|+.+..+..+. .... . ++.++||+++||... |.
T Consensus 1026 ~~~prVaIl~~pG~N~-------------~~e~~~Af~~aGf~~~~v~~~dL~~~~--~-l~~f~glv~~GGFS~gD~l~ 1089 (1304)
T PHA03366 1026 DKRHRVAVLLLPGCPG-------------PHALLAAFTNAGFDPYPVSIEELKDGT--F-LDEFSGLVIGGSSGAEDSYT 1089 (1304)
T ss_pred CCCCeEEEEECCCCCC-------------HHHHHHHHHHcCCceEEEEeecCCCCC--c-cccceEEEEcCCCCCccccc
Confidence 4689999999998754 2466678999999998887542 1111 1 678999999999862 11
Q ss_pred ---cCh------hHHHHHHHHHHHhcCCCCCccEeehhH-HHHHHHHH
Q 039121 131 ---LYY------DIVEKIFKKILEKNDAGDHFPVYAICL-GFELLSMI 168 (232)
Q Consensus 131 ---~~~------~~~~~~~~~~l~~~~~~~~~PILGICl-G~QlL~~~ 168 (232)
.|. ..+++.++..+. .++.++||||. |+|+|...
T Consensus 1090 ~~~~~a~~il~n~~~~~~~~~f~~----r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1090 GARAAVAALLSNPAVRDALLRFLN----RPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred HHHHHHHHhhhchHHHHHHHHHHh----CCCCeEEEeCcHHHHHHHHc
Confidence 111 123444555443 35799999998 99999884
No 105
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.65 E-value=3.6e-05 Score=63.06 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=35.9
Q ss_pred hcCCCEEEECCCCCC--CccChh--HHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHc
Q 039121 114 LELVNGILYTGGWAK--SGLYYD--IVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVS 170 (232)
Q Consensus 114 l~~~dGlIl~GG~~~--~~~~~~--~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~G 170 (232)
+..+|+|+|+||... +..+.+ ..++.++.+.++ +.||+|||-|||+|...+-
T Consensus 5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~-----G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEA-----GGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHc-----CCcEEEEchHHHHHHHHHh
Confidence 568999999999761 111111 133445555444 6999999999999999764
No 106
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.61 E-value=7.5e-05 Score=70.85 Aligned_cols=87 Identities=17% Similarity=0.287 Sum_probs=56.8
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHH
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVE 137 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~ 137 (232)
+.|||-... ..+|......+.|+++ ++++.+..-.+ +. +..+|+|+|+||... .+...++
T Consensus 234 ~~iavA~D~------------AF~FyY~enl~~L~~~-aelv~fSPl~~-~~----lp~~D~l~lpGG~~e--~~~~~L~ 293 (433)
T PRK13896 234 PTVAVARDA------------AFCFRYPATIERLRER-ADVVTFSPVAG-DP----LPDCDGVYLPGGYPE--LHADALA 293 (433)
T ss_pred CeEEEEEcC------------ccceeCHHHHHHHHhc-CcEEEEcCCCC-CC----CCCCCEEEeCCCchh--hHHHHHH
Confidence 578887542 1223345677889999 88888765333 22 457899999999841 1111111
Q ss_pred -----HHHHHHHHhcCCCCCccEeehhHHHHHHHHHH
Q 039121 138 -----KIFKKILEKNDAGDHFPVYAICLGFELLSMIV 169 (232)
Q Consensus 138 -----~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~ 169 (232)
+.++... ++++||+|||-|+|+|+..+
T Consensus 294 ~n~~~~~i~~~~-----~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 294 DSPALDELADRA-----ADGLPVLGECGGLMALAESL 325 (433)
T ss_pred hCCcHHHHHHHH-----HCCCcEEEEehHHHHhhccc
Confidence 2233333 34699999999999999976
No 107
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.39 E-value=0.00024 Score=68.14 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=33.5
Q ss_pred hcCCCEEEECCCCCCCc--cChhH--HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHH
Q 039121 114 LELVNGILYTGGWAKSG--LYYDI--VEKIFKKILEKNDAGDHFPVYAICLGFELLSMIV 169 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~~--~~~~~--~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~ 169 (232)
+..+|+|+||||..... .+... ..+.++.+.+ ++.||||||-|||+|+..+
T Consensus 282 l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~-----~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 282 LTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAK-----EGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred cccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHH-----cCCcEEEEcHHHHHhhhhh
Confidence 45789999999985211 11111 1233333333 4699999999999999965
No 108
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.28 E-value=0.0011 Score=58.06 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=66.1
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCC--ccCh
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKS--GLYY 133 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~--~~~~ 133 (232)
.+|.|.+....... .....|+ .++.+.+++.|+++..+... ++..+.++.+|+|+++||.... ..+.
T Consensus 30 ~~~~v~fIPtAs~~-------~~~~~y~-~~~~~af~~lG~~v~~l~~~---~d~~~~l~~ad~I~v~GGnt~~l~~~l~ 98 (233)
T PRK05282 30 GRRKAVFIPYAGVT-------QSWDDYT-AKVAEALAPLGIEVTGIHRV---ADPVAAIENAEAIFVGGGNTFQLLKQLY 98 (233)
T ss_pred CCCeEEEECCCCCC-------CCHHHHH-HHHHHHHHHCCCEEEEeccc---hhhHHHHhcCCEEEECCccHHHHHHHHH
Confidence 46888888765432 1246677 46888999999998877543 2334557899999999998621 1111
Q ss_pred h-HHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHc
Q 039121 134 D-IVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVS 170 (232)
Q Consensus 134 ~-~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~G 170 (232)
+ ...+.++.++++ ++|+.|+|-|+-+++....
T Consensus 99 ~~gl~~~l~~~~~~-----G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 99 ERGLLAPIREAVKN-----GTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred HCCcHHHHHHHHHC-----CCEEEEECHHHHhhhccce
Confidence 1 123445555544 5999999999988777544
No 109
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=97.11 E-value=0.0027 Score=54.95 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=37.0
Q ss_pred hcCCCEEEECCCCCCC---------ccC---hhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHc
Q 039121 114 LELVNGILYTGGWAKS---------GLY---YDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVS 170 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~---------~~~---~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~G 170 (232)
.+.+|+|++|||.... +.+ .....++++.+.++ ++||.+||.|-++|..+.+
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~-----gK~vaAIChgp~iL~~~~~ 146 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQA-----GKPIGFICIAPAMLPKILG 146 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHC-----CCEEEEECHHHHHHHHHhc
Confidence 3479999999996411 111 12355666766655 5999999999999998763
No 110
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=97.10 E-value=0.0029 Score=53.85 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=63.4
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC--ChHHHHHhhcCCCEEEECCCCCCCccChh
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE--PEEILFEKLELVNGILYTGGWAKSGLYYD 134 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~--~~e~l~~~l~~~dGlIl~GG~~~~~~~~~ 134 (232)
.|.|.+....... ...|. ..+.+++++.|++++.+.... +.++..+.+..+|+|+++||... .+..
T Consensus 29 ~~~i~~iptA~~~---------~~~~~-~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~--~~~~ 96 (210)
T cd03129 29 GARVLFIPTASGD---------RDEYG-EEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQL--RLLS 96 (210)
T ss_pred CCeEEEEeCCCCC---------hHHHH-HHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHH--HHHH
Confidence 5778887665421 22343 578889999999888776532 33556667889999999999861 1112
Q ss_pred HHHH--HHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 135 IVEK--IFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 135 ~~~~--~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
..++ .++..++.. .++.|+.|+|-|..++...
T Consensus 97 ~l~~t~~~~~i~~~~--~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 97 VLRETPLLDAILKRV--ARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHhCChHHHHHHHH--HcCCeEEEcCHHHHHhhhc
Confidence 2111 122222111 1369999999999999986
No 111
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.06 E-value=0.00022 Score=55.85 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=29.1
Q ss_pred cCCCEEEECCCCCCCccC-h-hHHHHHHHHHHHhcCCCCCccEeehhHHHHHH
Q 039121 115 ELVNGILYTGGWAKSGLY-Y-DIVEKIFKKILEKNDAGDHFPVYAICLGFELL 165 (232)
Q Consensus 115 ~~~dGlIl~GG~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL 165 (232)
+++|.||+|||++.+... . ....+.++..++ +++|+||||+|.-+-
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L~~~g~~~i~~~v~-----~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGADLPYCRALNGKGNRRIRNFVR-----NGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCChHHHHHHHHhhCcHHHHHHHH-----CCCcEEEEecCccce
Confidence 378999999987632110 0 011234444443 369999999998776
No 112
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=97.05 E-value=0.003 Score=54.61 Aligned_cols=54 Identities=19% Similarity=0.399 Sum_probs=37.6
Q ss_pred hcCCCEEEECCCCCCC-c--cC---------hhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHc-Cc
Q 039121 114 LELVNGILYTGGWAKS-G--LY---------YDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVS-ED 172 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~-~--~~---------~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~G-G~ 172 (232)
.+.+|+|+||||.... . .| .....++++.+.++ ++||.+||.|-++|+.+.+ |+
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~-----gK~VaAIChgp~~L~~~~~kGr 146 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQA-----GKPIGAICIAPALAAKILGEGV 146 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHC-----CCeEEEECHHHHHHHHHhccCC
Confidence 3468999999996411 0 00 12355666666655 5999999999999998774 44
No 113
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=96.89 E-value=0.0065 Score=49.23 Aligned_cols=78 Identities=23% Similarity=0.260 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCeEEEEeCCCC------------hHHHHHh-hcCCCEEEECCCCCCCcc-ChhHHHHHHHHHHHhcCCCC
Q 039121 86 SYVKFAESGGARVIPLIFNEP------------EEILFEK-LELVNGILYTGGWAKSGL-YYDIVEKIFKKILEKNDAGD 151 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~------------~e~l~~~-l~~~dGlIl~GG~~~~~~-~~~~~~~~~~~~l~~~~~~~ 151 (232)
...+.++++|.++..+..... ...+++. .+.+|+|+++||...... ......++++.+.++
T Consensus 17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~----- 91 (166)
T TIGR01382 17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEK----- 91 (166)
T ss_pred HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHc-----
Confidence 445677788887766643210 0112221 125899999999652110 112345566666554
Q ss_pred CccEeehhHHHHHHHHH
Q 039121 152 HFPVYAICLGFELLSMI 168 (232)
Q Consensus 152 ~~PILGIClG~QlL~~~ 168 (232)
++||.|||-|.++|+.+
T Consensus 92 ~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 92 GKPVAAICHGPQLLISA 108 (166)
T ss_pred CCEEEEEChHHHHHHhc
Confidence 59999999999999975
No 114
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=96.70 E-value=0.0067 Score=52.93 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=36.0
Q ss_pred cCCCEEEECCCCCCCccC--hhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 115 ELVNGILYTGGWAKSGLY--YDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 115 ~~~dGlIl~GG~~~~~~~--~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+.+|+|++|||......+ .....++++.+.+. ++||-+||.|-++|..+
T Consensus 93 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~-----gK~iaAIChgp~~L~~a 143 (231)
T cd03147 93 DDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYAN-----GGVVAAVCHGPAILANL 143 (231)
T ss_pred hhCcEEEECCCCchhhhcccCHHHHHHHHHHHHc-----CCEEEEEChHHHHHHhh
Confidence 478999999996521111 23456777777665 59999999999999876
No 115
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=96.67 E-value=0.0028 Score=57.36 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=47.3
Q ss_pred cCCCEEEECCCCCC-----CccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHH-HHHHHcCcccccccccCCCceEeE
Q 039121 115 ELVNGILYTGGWAK-----SGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFEL-LSMIVSEDRNILETFDRANQASTL 188 (232)
Q Consensus 115 ~~~dGlIl~GG~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Ql-L~~~~GG~~~il~~~~~e~~~~pl 188 (232)
+.+||+|+||-|-. +-.|..+..++++++.+.. ++.|.||.|.|. |...+|-.-..+... --+-.+.
T Consensus 97 ~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v-----~stl~iCWgAqAaLy~~yGI~K~~l~~K--lfGVf~~ 169 (298)
T PF04204_consen 97 RKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHV-----TSTLFICWGAQAALYHFYGIPKYPLPEK--LFGVFEH 169 (298)
T ss_dssp S-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHE-----EEEEEETHHHHHHHHHHH----EEEEEE--EEEEEEE
T ss_pred CCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcC-----CcchhhhHHHHHHHHHHcCCCcccCCCc--ceeceee
Confidence 36899999998862 2356788999999998875 999999999999 666666542222211 1111222
Q ss_pred EEeecCCCCCCCCcCCChhH
Q 039121 189 QFVKNINIEGTLFQRFPPEL 208 (232)
Q Consensus 189 ~~~~~~~~~s~LF~~lp~~l 208 (232)
... .. .++|++++++.+
T Consensus 170 ~~~--~~-~~pLl~Gfdd~f 186 (298)
T PF04204_consen 170 RVL--DP-DHPLLRGFDDTF 186 (298)
T ss_dssp EES---S-S-GGGTT--SEE
T ss_pred ecc--CC-CChhhcCCCccc
Confidence 211 12 578888887544
No 116
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.57 E-value=0.003 Score=52.24 Aligned_cols=48 Identities=27% Similarity=0.355 Sum_probs=34.5
Q ss_pred CCCEEEECCCCCCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 116 LVNGILYTGGWAKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 116 ~~dGlIl~GG~~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.+|+|+++||+.... ........+++.+.++ ++||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~-----~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEA-----NKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHc-----CCEEEEECcHHHHHHHc
Confidence 579999999975211 1113355666666554 59999999999999985
No 117
>PRK04155 chaperone protein HchA; Provisional
Probab=96.57 E-value=0.032 Score=50.33 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=35.3
Q ss_pred cCCCEEEECCCCCCCc--cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 115 ELVNGILYTGGWAKSG--LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 115 ~~~dGlIl~GG~~~~~--~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+.+|+|+||||..... .......++++++.++ ++||-+||.|-++|..+
T Consensus 146 ~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~-----~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 146 SDYAAVFIPGGHGALIGLPESEDVAAALQWALDN-----DRFIITLCHGPAALLAA 196 (287)
T ss_pred ccccEEEECCCCchHHHHhhCHHHHHHHHHHHHc-----CCEEEEEChHHHHHHHc
Confidence 5789999999975211 1113456777777765 59999999999877763
No 118
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=96.55 E-value=0.011 Score=47.85 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=49.3
Q ss_pred HHHHHHHhCCCeEEEEeCC-CCh-----H--------HHHHh-hcCCCEEEECCCCCCCcc-ChhHHHHHHHHHHHhcCC
Q 039121 86 SYVKFAESGGARVIPLIFN-EPE-----E--------ILFEK-LELVNGILYTGGWAKSGL-YYDIVEKIFKKILEKNDA 149 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~-~~~-----e--------~l~~~-l~~~dGlIl~GG~~~~~~-~~~~~~~~~~~~l~~~~~ 149 (232)
...+.++.+|.++.++..+ ... . .+.+. ...+|+|+++||+..... ......++++.+..+
T Consensus 17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~--- 93 (165)
T cd03134 17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEA--- 93 (165)
T ss_pred HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHc---
Confidence 3455678888888777544 110 0 12221 125799999999752211 123455666666554
Q ss_pred CCCccEeehhHHHHHHHHH
Q 039121 150 GDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 150 ~~~~PILGIClG~QlL~~~ 168 (232)
++||.|||-|.++|+.+
T Consensus 94 --~~~i~~ic~G~~~La~a 110 (165)
T cd03134 94 --GKPVAAICHGPWVLISA 110 (165)
T ss_pred --CCeEEEEchHHHHHHhc
Confidence 59999999999999874
No 119
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=96.51 E-value=0.013 Score=53.03 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=41.1
Q ss_pred cCCCEEEECCCCCC-----CccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcC
Q 039121 115 ELVNGILYTGGWAK-----SGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSE 171 (232)
Q Consensus 115 ~~~dGlIl~GG~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG 171 (232)
+.+||+|+||-|-. +-.|..+..++++++.+.- ...|.||.|.|.-...+=|
T Consensus 98 ~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v-----~Stl~iCWaAqAaLy~~yG 154 (300)
T TIGR01001 98 RKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNV-----TSTMFICWAAQAGLKYFYG 154 (300)
T ss_pred CCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcC-----cchHHHHHHHHHHHHHHcC
Confidence 47899999998852 2356788999999987764 9999999999995555433
No 120
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=96.30 E-value=0.017 Score=50.38 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=34.6
Q ss_pred cCCCEEEECCCCCCCc--cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 115 ELVNGILYTGGWAKSG--LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 115 ~~~dGlIl~GG~~~~~--~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+.+|+|++|||..... .......++++...++ ++||-.||.|-+.|..+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~-----gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKN-----DRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHc-----CCEEEEECcHHHHHHhc
Confidence 4789999999965211 1112355667776665 59999999999977764
No 121
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=96.16 E-value=0.032 Score=44.18 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=57.3
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC-----------h-HHHHHh-hcCCCEEEECCC
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP-----------E-EILFEK-LELVNGILYTGG 125 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~-----------~-e~l~~~-l~~~dGlIl~GG 125 (232)
.|+|+..++-. ..++ ....+.++.+|.++.++..+.. . ..+.+. ...+|.|+++||
T Consensus 3 ~v~ill~~g~~---------~~e~--~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg 71 (142)
T cd03132 3 KVGILVADGVD---------AAEL--SALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGG 71 (142)
T ss_pred EEEEEEcCCcC---------HHHH--HHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCC
Confidence 47777765421 1122 3566778889998887754321 0 011111 124799999998
Q ss_pred CCCCc--cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 126 WAKSG--LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 126 ~~~~~--~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
..... .......++++...++ ++||-+||-|-.+|+.+
T Consensus 72 ~~~~~~~~~~~~l~~~l~~~~~~-----~~~I~aic~G~~~La~a 111 (142)
T cd03132 72 AEAAFALAPSGRALHFVTEAFKH-----GKPIGAVGEGSDLLEAA 111 (142)
T ss_pred ccCHHHHccChHHHHHHHHHHhc-----CCeEEEcCchHHHHHHc
Confidence 76311 1112345566655554 59999999999999974
No 122
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.10 E-value=0.026 Score=46.62 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=35.5
Q ss_pred hcCCCEEEECCCCCCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 114 LELVNGILYTGGWAKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
...+|.|++|||..... .......++++....+ +++|.+||-|-++|+.+
T Consensus 62 ~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~-----~~~i~aic~g~~~La~a 112 (187)
T cd03137 62 LAAADTVIVPGGPDVDGRPPPPALLAALRRAAAR-----GARVASVCTGAFVLAEA 112 (187)
T ss_pred cCCCCEEEECCCcccccccCCHHHHHHHHHHHhc-----CCEEEEECHHHHHHHHc
Confidence 45789999999866321 1123345556555544 59999999999999985
No 123
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.09 E-value=0.0073 Score=57.92 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=39.1
Q ss_pred CCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCC-c-cChhH---HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHH
Q 039121 95 GARVIPLIFNEPEEILFEKLELVNGILYTGGWAKS-G-LYYDI---VEKIFKKILEKNDAGDHFPVYAICLGFELLSMIV 169 (232)
Q Consensus 95 G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~-~-~~~~~---~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~ 169 (232)
+.++..++...+ +..+|.+||||.-..- . .+.+. .+++.+++ +++.||+|||=|||+|....
T Consensus 276 ~v~v~~v~~~~~-------l~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~------~~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 276 DVRVRFVKPGSD-------LRDADLVILPGSKNTIADLKILREGGMDEKILEYA------RKGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred CeEEEEeccCCC-------CCCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHH------hCCCCEEEEcchHHhhhhhh
Confidence 677777664332 5569999999976521 1 11111 22333333 33699999999999998854
No 124
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.07 E-value=0.0038 Score=54.16 Aligned_cols=72 Identities=22% Similarity=0.245 Sum_probs=45.5
Q ss_pred HHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCcc----ChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHH
Q 039121 90 FAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGL----YYDIVEKIFKKILEKNDAGDHFPVYAICLGFELL 165 (232)
Q Consensus 90 ~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~----~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL 165 (232)
..+..|+.+.+++.+.++. .++ +.+|-+++-||.+-.-. .......-++.+++ +++|+|.||-|.|+|
T Consensus 29 ra~~rgi~v~i~~vsl~d~-~~~--~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~-----~g~p~laiCgg~QlL 100 (250)
T COG3442 29 RAEKRGIKVEIVEVSLTDT-FPD--DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIE-----NGKPVLAICGGYQLL 100 (250)
T ss_pred HHHhcCCceEEEEeecCCC-CCc--ccccEEEecCchHHHHHHHhhhhccccHHHHHHHh-----cCCcEEEEccchhhc
Confidence 3567888887777655432 221 47899999888872100 00111223444444 469999999999999
Q ss_pred HHHH
Q 039121 166 SMIV 169 (232)
Q Consensus 166 ~~~~ 169 (232)
..++
T Consensus 101 G~yY 104 (250)
T COG3442 101 GQYY 104 (250)
T ss_pred ccee
Confidence 9864
No 125
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.76 E-value=0.027 Score=46.12 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=34.6
Q ss_pred cCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 115 ELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 115 ~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+.+|.|+++||......-......++++..++ +++|.+||-|.++|+.+
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~-----~~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQ-----GKPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHc-----CCEEEEEChHHHHHHHC
Confidence 46899999999752221112344556655544 59999999999999985
No 126
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=95.26 E-value=0.23 Score=41.43 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=54.4
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC---------------ChHHHHHh-hcCCCE
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE---------------PEEILFEK-LELVNG 119 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~---------------~~e~l~~~-l~~~dG 119 (232)
++|.|.|+..++-. ...+ ...++.++++|..+....... ....+.+. .+.+|.
T Consensus 1 ~~~~~~il~~~g~~---------~~e~--~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~ 69 (196)
T PRK11574 1 MSASALVCLAPGSE---------ETEA--VTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDV 69 (196)
T ss_pred CCceEEEEeCCCcc---------hhhH--hHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCE
Confidence 35678888776532 1222 244566777777665543211 01122221 136899
Q ss_pred EEECCCCCC-Ccc-ChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHH
Q 039121 120 ILYTGGWAK-SGL-YYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSM 167 (232)
Q Consensus 120 lIl~GG~~~-~~~-~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~ 167 (232)
|++|||... ... ......++++...++ +++|.+||-|-.+|..
T Consensus 70 l~ipGG~~~~~~~~~~~~l~~~L~~~~~~-----g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 70 IVLPGGIKGAECFRDSPLLVETVRQFHRS-----GRIVAAICAAPATVLV 114 (196)
T ss_pred EEECCCCchhhhhhhCHHHHHHHHHHHHC-----CCEEEEECHhHHHHHH
Confidence 999998641 111 112345556655544 5999999999997554
No 127
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=95.15 E-value=0.0076 Score=48.30 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=34.4
Q ss_pred cCCCEEEECCCCC-CCccC--hhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 115 ELVNGILYTGGWA-KSGLY--YDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 115 ~~~dGlIl~GG~~-~~~~~--~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+.+|+|++|||.. ..... .....++++.+.+. ++||.+||-|-.+|..+
T Consensus 36 ~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~-----~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 36 SDYDALILPGGHGGADDLRTDSKDLLELLKEFYEA-----GKPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHT-----T-EEEEETTCHHHHHHT
T ss_pred hhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHc-----CCeEEecCCCcchhhcc
Confidence 4699999999986 21111 13466777777766 59999999999888875
No 128
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=95.01 E-value=0.03 Score=46.44 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=47.7
Q ss_pred HHHHHHhCCCeEEEEeCCCC--------------hHHHHHhh--cCCCEEEECCC-CCCCccCh-hHHHHHHHHHHHhcC
Q 039121 87 YVKFAESGGARVIPLIFNEP--------------EEILFEKL--ELVNGILYTGG-WAKSGLYY-DIVEKIFKKILEKND 148 (232)
Q Consensus 87 ~v~~l~~~G~~vv~i~~~~~--------------~e~l~~~l--~~~dGlIl~GG-~~~~~~~~-~~~~~~~~~~l~~~~ 148 (232)
-.+.++++|..+..+..... .....+.. +.+|+|++||| ......+. ....++++.+.+.
T Consensus 21 p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~-- 98 (188)
T COG0693 21 PYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYAN-- 98 (188)
T ss_pred HHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhccCcHHHHHHHHHHHHc--
Confidence 34568888886655543321 00011112 37899999999 55211111 3455666666655
Q ss_pred CCCCccEeehhHHHHHHHHH
Q 039121 149 AGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 149 ~~~~~PILGIClG~QlL~~~ 168 (232)
++||.+||-|-++|..+
T Consensus 99 ---~k~vaaIC~g~~~L~~a 115 (188)
T COG0693 99 ---GKPVAAICHGPAVLAAA 115 (188)
T ss_pred ---CCEEEEEChhHHHHhcc
Confidence 59999999999999875
No 129
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=94.60 E-value=0.19 Score=44.41 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=62.2
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCe-EEEEeCCC----ChHHHHHhhcCCCEEEECCCCCCC--
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGAR-VIPLIFNE----PEEILFEKLELVNGILYTGGWAKS-- 129 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~-vv~i~~~~----~~e~l~~~l~~~dGlIl~GG~~~~-- 129 (232)
.|.|.|....+. ....|. ..|.+++++.|++ +.++.... +.++..+.+..+|+|+++||....
T Consensus 28 ~~rI~~iptAS~---------~~~~~~-~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~ 97 (250)
T TIGR02069 28 DAIIVIITSASE---------EPREVG-ERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRIT 97 (250)
T ss_pred CceEEEEeCCCC---------ChHHHH-HHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHH
Confidence 478888876542 123453 4788999999984 55555421 223345567899999999998610
Q ss_pred ccChh-HHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 130 GLYYD-IVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 130 ~~~~~-~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
..+.+ ...+.++.++++ +.|+.|+--|.-+|+..
T Consensus 98 ~~l~~t~l~~~l~~~~~~-----G~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 98 SLLGDTPLLDRLRKRVHE-----GIILGGTSAGAAVMSDT 132 (250)
T ss_pred HHHcCCcHHHHHHHHHHc-----CCeEEEccHHHHhcccc
Confidence 01101 123445555544 59999999999988654
No 130
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.59 E-value=0.1 Score=42.70 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=33.2
Q ss_pred cCCCEEEECCCCCCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 115 ELVNGILYTGGWAKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 115 ~~~dGlIl~GG~~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
..+|.|++|||..... .......++++...+ ++++|.+||-|.-+|+.+
T Consensus 61 ~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~-----~~k~i~aic~g~~~La~a 110 (183)
T cd03139 61 PDLDVLLVPGGGGTRALVNDPALLDFIRRQAA-----RAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCCEEEECCCcchhhhccCHHHHHHHHHhcc-----cCCEEEEEchHHHHHHhc
Confidence 4789999999965221 111234445554443 469999999999988874
No 131
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=94.57 E-value=0.21 Score=42.99 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=62.4
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeE-EEEeCCC----ChHHHHHhhcCCCEEEECCCCCCCcc
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARV-IPLIFNE----PEEILFEKLELVNGILYTGGWAKSGL 131 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~v-v~i~~~~----~~e~l~~~l~~~dGlIl~GG~~~~~~ 131 (232)
.|.|.++...... ...+ ...|.+++++.|+.. ..+.... +..++.+.++.+|+|+++||... .
T Consensus 29 ~~~i~~iptA~~~---------~~~~-~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~--~ 96 (217)
T cd03145 29 GARIVVIPAASEE---------PAEV-GEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQL--R 96 (217)
T ss_pred CCcEEEEeCCCcC---------hhHH-HHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHH--H
Confidence 5778888765432 1333 457888999999854 4443331 23345566889999999999861 1
Q ss_pred Chh-----HHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 132 YYD-----IVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 132 ~~~-----~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+.. .+.+.++.++++ +.|+.|+--|.-+++..
T Consensus 97 ~~~~l~~t~l~~~l~~~~~~-----G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 97 ITSALGGTPLLDALRKVYRG-----GVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHcCChHHHHHHHHHHc-----CCEEEEccHHHHhhhhc
Confidence 111 133455555544 69999999999998775
No 132
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.33 E-value=0.11 Score=43.11 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=34.4
Q ss_pred hcCCCEEEECCCCCCCc--cC--hhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 114 LELVNGILYTGGWAKSG--LY--YDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~~--~~--~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.+.+|.|++|||..... .. .....++++....+ +++|.+||-|..+|+.+
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~i~aic~G~~~La~a 120 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHAN-----GATVAAACTGVFLLAEA 120 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHc-----CCEEEEecHHHHHHHHc
Confidence 45789999999865221 11 12344555555544 59999999999999984
No 133
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=94.32 E-value=0.065 Score=46.13 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=35.2
Q ss_pred cCCCEEEECCCCCCCc--cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 115 ELVNGILYTGGWAKSG--LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 115 ~~~dGlIl~GG~~~~~--~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+.+|+|++|||..... .......++++...++ +++|.+||-|-.+|+.+
T Consensus 89 ~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~-----~k~iaaIC~g~~~La~a 139 (221)
T cd03141 89 SDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYEN-----GKVVAAVCHGPAALLNV 139 (221)
T ss_pred hHceEEEECCCcccccccccCHHHHHHHHHHHHc-----CCEEEEEcchHHHHHhc
Confidence 4689999999975211 1123355666666654 59999999999999985
No 134
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=94.32 E-value=0.12 Score=41.94 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=49.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhH-----HHHHHHHHHHhcCCCCCccEeeh
Q 039121 85 ASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDI-----VEKIFKKILEKNDAGDHFPVYAI 158 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~PILGI 158 (232)
..+.+++++.|+++..+.... +.++..+.+..+|+|+|+||... .+... +.+.++.++.+ +.++.|+
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~--~l~~~l~~t~l~~~i~~~~~~-----G~vi~G~ 75 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTF--RLLRQLKETGLDEAIREAYRK-----GGVIIGT 75 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HH--HHHHHHHHTTHHHHHHHHHHT-----TSEEEEE
T ss_pred HHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHH--HHHHHHHhCCHHHHHHHHHHC-----CCEEEEE
Confidence 367789999999988887654 34566777889999999999861 12222 34556666554 5999999
Q ss_pred hHHHHH
Q 039121 159 CLGFEL 164 (232)
Q Consensus 159 ClG~Ql 164 (232)
--|.-+
T Consensus 76 SAGA~i 81 (154)
T PF03575_consen 76 SAGAMI 81 (154)
T ss_dssp THHHHC
T ss_pred ChHHhh
Confidence 999855
No 135
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=94.21 E-value=0.056 Score=43.25 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=34.5
Q ss_pred cCCCEEEECCCC-CCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 115 ELVNGILYTGGW-AKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 115 ~~~dGlIl~GG~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
..+|.|++|||. .... .......++++...++ +++|.+||-|..+|+.+
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~-----~~~i~~ic~g~~~La~a 109 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAK-----GKLIAAICAAPAVLAKA 109 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHc-----CCEEEEEchhHHHHHHc
Confidence 478999999997 3111 1113345566655544 59999999999999986
No 136
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=94.16 E-value=0.13 Score=45.82 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=40.5
Q ss_pred cCCCEEEECCCCCC-----CccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCc
Q 039121 115 ELVNGILYTGGWAK-----SGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSED 172 (232)
Q Consensus 115 ~~~dGlIl~GG~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~ 172 (232)
+++||+|+||-|-. +-.|-.+.+.++++.... ---.|=||.|.|.--.++=|-
T Consensus 98 ~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~-----V~STl~ICWgaqAaly~~yGv 155 (307)
T COG1897 98 QKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTH-----VTSTLHICWGAQAALYYFYGV 155 (307)
T ss_pred cccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhc-----chhhhhhHHHHHHHHHHHcCC
Confidence 37999999998851 224567788889888654 267899999999987776553
No 137
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=93.87 E-value=0.12 Score=42.55 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=35.0
Q ss_pred hcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 114 LELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
...+|.|++|||............++++...++ ++.|.+||-|..+|+.+
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~-----~~~i~aic~g~~~La~a 111 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARR-----GVALGGIDTGAFLLARA 111 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhc-----CCEEEEEcHHHHHHHHc
Confidence 347899999998653221223345556655544 59999999999999974
No 138
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=93.81 E-value=0.13 Score=52.78 Aligned_cols=96 Identities=17% Similarity=0.298 Sum_probs=61.9
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC------
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK------ 128 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~------ 128 (232)
.++|.+.|+-..+.+. .+....++..+|++++-+..+. .-.-+--++++-||+++||...
T Consensus 1056 s~~PkVAilREeGvNg-------------~rEMa~af~~AgF~~~DVtmtD-lL~G~~~ld~frGlaf~GGFSYaDvLgS 1121 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVNG-------------DREMAAAFYAAGFETVDVTMTD-LLAGRHHLDDFRGLAFCGGFSYADVLGS 1121 (1320)
T ss_pred cCCCceEEeecccccc-------------HHHHHHHHHHcCCceeeeeeeh-hhcCceeHhHhcceeeecCcchHhhhcc
Confidence 4589999998766421 2355556888999887665321 1001123567899999999751
Q ss_pred CccCh------hHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 129 SGLYY------DIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 129 ~~~~~------~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
...|. ...+..|+....+. +.=-||||.|.|+|+..
T Consensus 1122 akGWAasil~ne~v~~QF~~F~~R~----DtFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1122 AKGWAASILFNESVRSQFEAFFNRQ----DTFSLGICNGCQLMSRL 1163 (1320)
T ss_pred ccchhhheeeChhHHHHHHHHhcCC----CceeeecccHhHHHHHh
Confidence 01121 23556666665543 56679999999999985
No 139
>PRK11249 katE hydroperoxidase II; Provisional
Probab=93.29 E-value=0.39 Score=48.76 Aligned_cols=97 Identities=12% Similarity=0.035 Sum_probs=60.1
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC------------hHHHHHh-hcCCCEEEE
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP------------EEILFEK-LELVNGILY 122 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~------------~e~l~~~-l~~~dGlIl 122 (232)
....|||+...+-. ...+ ..+.+.++++|+.+.++..... ...+... ...+|+|++
T Consensus 596 ~gRKIaILVaDG~d---------~~ev--~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvV 664 (752)
T PRK11249 596 KGRKVAILLNDGVD---------AADL--LAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIV 664 (752)
T ss_pred cccEEEEEecCCCC---------HHHH--HHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEE
Confidence 34579999876531 1122 3567789999998887753211 0011111 114899999
Q ss_pred CCCCCCCcc--ChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 123 TGGWAKSGL--YYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 123 ~GG~~~~~~--~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+||...... ....+.++++.+... .++|.+||-|.++|..+
T Consensus 665 PGG~~~~~~L~~d~~al~fL~eaykH-----gK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 665 PGGKANIADLADNGDARYYLLEAYKH-----LKPIALAGDARKLKAAL 707 (752)
T ss_pred CCCchhHHHHhhCHHHHHHHHHHHHc-----CCEEEEeCccHHHHHhc
Confidence 999641111 112355666666654 59999999999999974
No 140
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=92.63 E-value=0.2 Score=47.61 Aligned_cols=88 Identities=18% Similarity=0.308 Sum_probs=59.3
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhc-CCCEEEECCCCCCCccChhH-
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLE-LVNGILYTGGWAKSGLYYDI- 135 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~-~~dGlIl~GG~~~~~~~~~~- 135 (232)
..|+|-...- ..|--....+.++++|++++.+..-.+. + +. .+|+|.|+||-- ..+.++
T Consensus 246 ~rIAVA~D~A------------F~FyY~~nl~~Lr~~GAelv~FSPL~D~-~----lP~~~D~vYlgGGYP--ElfA~~L 306 (451)
T COG1797 246 VRIAVARDAA------------FNFYYPENLELLREAGAELVFFSPLADE-E----LPPDVDAVYLGGGYP--ELFAEEL 306 (451)
T ss_pred ceEEEEecch------------hccccHHHHHHHHHCCCEEEEeCCcCCC-C----CCCCCCEEEeCCCCh--HHHHHHH
Confidence 5788876532 1222356778899999999998765442 2 34 599999999963 112111
Q ss_pred -----HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHH
Q 039121 136 -----VEKIFKKILEKNDAGDHFPVYAICLGFELLSMIV 169 (232)
Q Consensus 136 -----~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~ 169 (232)
.++.++.+.+ .++||+|=|=|+-.|+..+
T Consensus 307 ~~n~~~~~~i~~~~~-----~G~piyaECGGlMYL~~~l 340 (451)
T COG1797 307 SANESMRRAIKAFAA-----AGKPIYAECGGLMYLGESL 340 (451)
T ss_pred hhCHHHHHHHHHHHH-----cCCceEEecccceeehhhe
Confidence 3444444444 4699999999998888865
No 141
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=92.58 E-value=0.13 Score=41.95 Aligned_cols=50 Identities=28% Similarity=0.293 Sum_probs=33.9
Q ss_pred hcCCCEEEECCCCCCCc--cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 114 LELVNGILYTGGWAKSG--LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~~--~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.+.+|.|+++||..... .......++++....+ +++|.+||-|-.+|+.+
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~-----~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESK-----GKLVAAICAAPAVLLAA 112 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHC-----CCEEEEEChhHHHHHhc
Confidence 34689999999863111 0112344555555544 59999999999999985
No 142
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=92.54 E-value=0.34 Score=43.68 Aligned_cols=50 Identities=14% Similarity=0.198 Sum_probs=34.2
Q ss_pred hcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 114 LELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.+.+|.||+|||............++++....+ +++|.|||-|--+|+.+
T Consensus 73 ~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~-----~~~i~aic~g~~~La~a 122 (322)
T PRK09393 73 LDRADTIVIPGWRGPDAPVPEPLLEALRAAHAR-----GARLCSICSGVFVLAAA 122 (322)
T ss_pred cCCCCEEEECCCCcccccCCHHHHHHHHHHHHc-----CCEEEEEcHHHHHHHhc
Confidence 457899999998653222123344555554443 58999999999999875
No 143
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=91.55 E-value=0.16 Score=41.18 Aligned_cols=50 Identities=16% Similarity=0.099 Sum_probs=32.0
Q ss_pred hcCCCEEEECCCCCCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 114 LELVNGILYTGGWAKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
....|.||+|||+.... .......+.++... .++.+|.|||-|..+|+.+
T Consensus 59 ~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~-----~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 59 APDFDILVVPGGPGFDAAAKDPALLDWLRQQH-----AQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CSCCSEEEEE-STTHHHHTT-HHHHHHHHHHH-----CCTSEEEEETTHHHHHHHT
T ss_pred cccCCEEEeCCCCCchhcccCHHHHHHhhhhh-----ccceEEeeeehHHHHHhhh
Confidence 45799999999988111 11122233333332 3469999999999999985
No 144
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=91.10 E-value=0.79 Score=39.81 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=61.5
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCC-CChHHHHHhhcCCCEEEECCCCCCCccChhH
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFN-EPEEILFEKLELVNGILYTGGWAKSGLYYDI 135 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~-~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~ 135 (232)
++.|......+.. .+.+.|+. ...+++++.|..+.-++.. .+.+++++.+...|.|++.||.... ....
T Consensus 32 ~~~i~FIPtAs~~-------~~~~~Yv~-k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~--LL~~ 101 (224)
T COG3340 32 RKTIAFIPTASVD-------SEDDFYVE-KVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFN--LLQE 101 (224)
T ss_pred CceEEEEecCccc-------cchHHHHH-HHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHH--HHHH
Confidence 4566655544321 13455764 5678999999999888754 3567788888889999999998621 1111
Q ss_pred -----HHHHHHHHHHhcCCCCCccEeehhHHHH
Q 039121 136 -----VEKIFKKILEKNDAGDHFPVYAICLGFE 163 (232)
Q Consensus 136 -----~~~~~~~~l~~~~~~~~~PILGIClG~Q 163 (232)
..++++..+.+ ++|..|+--|.-
T Consensus 102 lke~gld~iIr~~vk~-----G~~YiG~SAGA~ 129 (224)
T COG3340 102 LKETGLDDIIRERVKA-----GTPYIGWSAGAN 129 (224)
T ss_pred HHHhCcHHHHHHHHHc-----CCceEEeccCce
Confidence 23555555554 699999877753
No 145
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.51 E-value=0.8 Score=41.70 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=49.4
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh-----------------HHHHHhhcCCCEEE
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE-----------------EILFEKLELVNGIL 121 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~-----------------e~l~~~l~~~dGlI 121 (232)
.|||..++... ...-+...+.+|+++.|..+......... .......+.+|.+|
T Consensus 7 ~I~iv~~~~~~---------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (306)
T PRK03372 7 RVLLVAHTGRD---------EATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVL 77 (306)
T ss_pred EEEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEE
Confidence 39999887532 22345678888999999988765421110 00012223589999
Q ss_pred ECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 122 YTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 122 l~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
.-||.+ ... ...+.+. ..++|||||-.|
T Consensus 78 ~lGGDG---T~L----~aar~~~-----~~~~PilGIN~G 105 (306)
T PRK03372 78 VLGGDG---TIL----RAAELAR-----AADVPVLGVNLG 105 (306)
T ss_pred EEcCCH---HHH----HHHHHhc-----cCCCcEEEEecC
Confidence 999976 111 1122222 346999999877
No 146
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=90.32 E-value=0.65 Score=40.77 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=28.9
Q ss_pred cCCCEEEECCC-CCCCccCh---hHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 115 ELVNGILYTGG-WAKSGLYY---DIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 115 ~~~dGlIl~GG-~~~~~~~~---~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+.+|.|||||| ++. ..+ ....++++...+ ++++|..||-|= +++.+
T Consensus 66 ~~yDviilPGG~~g~--e~L~~~~~v~~lvK~q~~-----~gkLIaaICaap-~~al~ 115 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGA--ETLSECEKVVDLVKEQAE-----SGKLIAAICAAP-LTALA 115 (247)
T ss_pred ccccEEEecCCchhh--hhhhhcHHHHHHHHHHHh-----cCCeEEEeecch-HHHHh
Confidence 57999999999 551 111 123344444433 369999999984 33333
No 147
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.12 E-value=1.7 Score=39.35 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=49.8
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC---h----------HHHHHhhcCCCEEEECCC
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP---E----------EILFEKLELVNGILYTGG 125 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~---~----------e~l~~~l~~~dGlIl~GG 125 (232)
.|||..++... ...-+...+.+|+++.|..+..-..... . ....+..+.+|-+|.-||
T Consensus 7 ~i~ii~~~~~~---------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGG 77 (296)
T PRK04539 7 NIGIVTRPNTP---------DIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGG 77 (296)
T ss_pred EEEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECC
Confidence 48999887542 2334567788899999998876432111 0 011222235899999999
Q ss_pred CCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 126 WAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
.+ ..... .+.+. ..++|||||-.|.
T Consensus 78 DG---T~L~a----a~~~~-----~~~~PilGIN~G~ 102 (296)
T PRK04539 78 DG---TFLSV----AREIA-----PRAVPIIGINQGH 102 (296)
T ss_pred cH---HHHHH----HHHhc-----ccCCCEEEEecCC
Confidence 76 12111 22221 2369999999885
No 148
>PRK01215 competence damage-inducible protein A; Provisional
Probab=87.38 E-value=3.2 Score=36.96 Aligned_cols=69 Identities=23% Similarity=0.193 Sum_probs=39.8
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHH----HHhhcCCCEEEECCCCCC
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF-NEPEEIL----FEKLELVNGILYTGGWAK 128 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l----~~~l~~~dGlIl~GG~~~ 128 (232)
+++|.++|.+.-.....|...+ .+..|+ .+.+++.|+++..... ..+.+.+ .+.++.+|-||++||-..
T Consensus 1 ~~~~~v~Ii~~GdEll~G~i~d-tn~~~l----~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~ 74 (264)
T PRK01215 1 MDKWFAWIITIGNELLIGRTVN-TNASWI----ARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLGP 74 (264)
T ss_pred CCCCEEEEEEEChhccCCeEEE-hhHHHH----HHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 4678899876533222232221 223333 4468999998854432 2333433 344456899999998763
No 149
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.35 E-value=1.6 Score=39.46 Aligned_cols=82 Identities=17% Similarity=0.069 Sum_probs=49.4
Q ss_pred EEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh-----------H---HHHHhhcCCCEEEECCC
Q 039121 60 IGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE-----------E---ILFEKLELVNGILYTGG 125 (232)
Q Consensus 60 IGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~-----------e---~l~~~l~~~dGlIl~GG 125 (232)
|||..++... ....+...+.+|+++.|..+..-...... . ...+..+.+|-+|.-||
T Consensus 3 igii~~~~~~---------~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGG 73 (292)
T PRK01911 3 IAIFGQTYQE---------SASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGG 73 (292)
T ss_pred EEEEeCCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECC
Confidence 8888876532 23445678889999999988764321100 0 11222236899999999
Q ss_pred CCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 126 WAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
.+ ... ...+.+. ..++|||||-.|.
T Consensus 74 DG---T~L----~aa~~~~-----~~~~PilGIN~G~ 98 (292)
T PRK01911 74 DG---TFL----RTATYVG-----NSNIPILGINTGR 98 (292)
T ss_pred cH---HHH----HHHHHhc-----CCCCCEEEEecCC
Confidence 76 111 1122221 2369999998874
No 150
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=87.32 E-value=4.3 Score=33.38 Aligned_cols=67 Identities=19% Similarity=0.142 Sum_probs=37.5
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHHHhh------cCCCEEEECCCCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF-NEPEEILFEKL------ELVNGILYTGGWAK 128 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~~~l------~~~dGlIl~GG~~~ 128 (232)
.+|.|||++.-.... ... ..+ ......++++.|+.+..... ..+.+.+.+.+ +.+|-||.+||...
T Consensus 3 ~~~rv~vit~~d~~~--~~~-d~n----~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~ 75 (163)
T TIGR02667 3 IPLRIAILTVSDTRT--EED-DTS----GQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGF 75 (163)
T ss_pred CccEEEEEEEeCcCC--ccC-CCc----HHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 367888876432211 111 111 22344578999998765543 23444443322 35899999999774
Q ss_pred C
Q 039121 129 S 129 (232)
Q Consensus 129 ~ 129 (232)
.
T Consensus 76 g 76 (163)
T TIGR02667 76 T 76 (163)
T ss_pred C
Confidence 3
No 151
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=87.03 E-value=7.4 Score=31.06 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCC-CChHHHH----HhhcCCCEEEECCCCCCC
Q 039121 84 SASYVKFAESGGARVIPLIFN-EPEEILF----EKLELVNGILYTGGWAKS 129 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~-~~~e~l~----~~l~~~dGlIl~GG~~~~ 129 (232)
...+.+.+++.|+++...... .+.+++. +.++.+|-||.+||....
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g 79 (144)
T TIGR00177 29 GPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVG 79 (144)
T ss_pred HHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCC
Confidence 344556799999988755433 3344443 334578999999987743
No 152
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.43 E-value=2 Score=39.16 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=48.8
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh-----------------HHHHHhhcCCCEEE
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE-----------------EILFEKLELVNGIL 121 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~-----------------e~l~~~l~~~dGlI 121 (232)
.|||..++... ...-+...+.+|+++.|..+......... .......+.+|-+|
T Consensus 3 ~igiv~n~~~~---------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi 73 (305)
T PRK02649 3 KAGIIYNDGKP---------LAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAI 73 (305)
T ss_pred EEEEEEcCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEE
Confidence 48888876531 23445678888999999988764321000 01122223589999
Q ss_pred ECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 122 YTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 122 l~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
.-||.+ ... ...+... ..++|||||-.|
T Consensus 74 ~iGGDG---TlL----~aar~~~-----~~~iPilGIN~G 101 (305)
T PRK02649 74 VLGGDG---TVL----SAARQLA-----PCGIPLLTINTG 101 (305)
T ss_pred EEeCcH---HHH----HHHHHhc-----CCCCcEEEEeCC
Confidence 999976 121 1222222 236999999876
No 153
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.37 E-value=1.9 Score=38.94 Aligned_cols=84 Identities=20% Similarity=0.121 Sum_probs=50.8
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC--------hHHHHHhhcCCCEEEECCCCCCC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP--------EEILFEKLELVNGILYTGGWAKS 129 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~--------~e~l~~~l~~~dGlIl~GG~~~~ 129 (232)
..|||..++... ...-+...+.+|+++.|.++.+...... .....+..+.+|.+|.-||.+
T Consensus 6 ~~i~iv~~~~~~---------~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDG-- 74 (292)
T PRK03378 6 KCIGIVGHPRHP---------TALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDG-- 74 (292)
T ss_pred CEEEEEEeCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcH--
Confidence 358999887542 2344567888999999988876432110 001122234689999999976
Q ss_pred ccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 130 GLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
... ...+.+. +.++|||||-.|-
T Consensus 75 -T~L----~aa~~~~-----~~~~Pilgin~G~ 97 (292)
T PRK03378 75 -NML----GAARVLA-----RYDIKVIGINRGN 97 (292)
T ss_pred -HHH----HHHHHhc-----CCCCeEEEEECCC
Confidence 111 1122221 2359999999887
No 154
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=84.34 E-value=2.8 Score=39.21 Aligned_cols=50 Identities=14% Similarity=0.055 Sum_probs=33.3
Q ss_pred hhcCCCEEEECCCCCCCcc--ChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHH
Q 039121 113 KLELVNGILYTGGWAKSGL--YYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSM 167 (232)
Q Consensus 113 ~l~~~dGlIl~GG~~~~~~--~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~ 167 (232)
+...++.+|+|||.+.... .-....+.++..+++ +.-.||||.|.-.-+.
T Consensus 46 w~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~-----GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 46 WQSKCALLVMPGGADLPYCRSLNGEGNRRIRQFVEN-----GGGYLGICAGAYYASS 97 (367)
T ss_pred cccCCcEEEECCCcchHHHHhhChHHHHHHHHHHHc-----CCcEEEECcchhhhcc
Confidence 4467899999999984211 112234556666654 5899999999766554
No 155
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=84.23 E-value=6.2 Score=37.38 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=56.3
Q ss_pred ceeccCCCCCCCCccccccccCCCCCCCCCCCCEEEEeCCCCCCCC-C-CcCCccchhhhHHHHHHHHHhCCCeEEEEeC
Q 039121 26 TILLPSQQHNADSVSTTFCAHCPAPDPSLNYRPVIGILSHPGDGAS-G-RLSNATNASYISASYVKFAESGGARVIPLIF 103 (232)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PvIGI~~~~~~~~~-~-~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~ 103 (232)
.+.|+.... .....+.+..+.....=....||.|||.+.=..--. + .+..++-.+.....+...+++.|++++....
T Consensus 146 ~vil~~G~~-L~p~~i~llas~Gi~~V~V~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~gi 224 (404)
T COG0303 146 DVILRAGTR-LTPAEIALLASLGIAEVKVYRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGI 224 (404)
T ss_pred CEeecCCCC-cCHHHHHHHHhCCCceEEEecCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccc
Confidence 444544432 223334455555555556678899999975422110 1 0111111222222344578999998876654
Q ss_pred CC-ChHHH----HHhhcCCCEEEECCCCCC
Q 039121 104 NE-PEEIL----FEKLELVNGILYTGGWAK 128 (232)
Q Consensus 104 ~~-~~e~l----~~~l~~~dGlIl~GG~~~ 128 (232)
.. +++.+ .+.++.+|-||.+||...
T Consensus 225 v~Dd~~~l~~~i~~a~~~~DviItsGG~Sv 254 (404)
T COG0303 225 VPDDPEALREAIEKALSEADVIITSGGVSV 254 (404)
T ss_pred cCCCHHHHHHHHHHhhhcCCEEEEeCCccC
Confidence 33 33443 344456999999999874
No 156
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.23 E-value=2.7 Score=37.95 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=49.6
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh-----HHHHHhhcCCCEEEECCCCCCCccCh
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE-----EILFEKLELVNGILYTGGWAKSGLYY 133 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~-----e~l~~~l~~~dGlIl~GG~~~~~~~~ 133 (232)
.|||..++.. ...-+...+.+|+++.|..+.+-...... ....+..+.+|-+|.-||.+
T Consensus 12 ~i~ii~~~~~----------~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG------ 75 (287)
T PRK14077 12 KIGLVTRPNV----------SLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDG------ 75 (287)
T ss_pred EEEEEeCCcH----------HHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCH------
Confidence 5999988752 12344667888999999888764321110 01122223689999999976
Q ss_pred hHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 134 DIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 134 ~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
+.....+.+. ..++|||||-.|.
T Consensus 76 -T~L~aa~~~~-----~~~~PilGIN~G~ 98 (287)
T PRK14077 76 -TLISLCRKAA-----EYDKFVLGIHAGH 98 (287)
T ss_pred -HHHHHHHHhc-----CCCCcEEEEeCCC
Confidence 1111222221 2369999999886
No 157
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=83.97 E-value=6.3 Score=39.01 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=38.0
Q ss_pred ccccCCCCCCCCCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEe
Q 039121 43 FCAHCPAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLI 102 (232)
Q Consensus 43 ~~~~~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~ 102 (232)
+.-++.-++..+..||+|||.....+...++ ..-.-++..+.+.++++|+.+..++
T Consensus 28 ~l~a~G~~~~d~~~KP~IgI~ns~se~~Pch----~hL~~la~~Vk~gv~~aGG~P~ef~ 83 (577)
T PRK13016 28 RMMQMGYAPEDFDGKPVIAILNTWSDANPCH----GHFRERVEDVKRGVLQAGGFPLELP 83 (577)
T ss_pred HHHHcCCCHHHHhcCCEEEEEecccCCcCch----hhHHHHHHHHHHHHHHcCCeeEecc
Confidence 3345667777776799999999876644321 2334456677778888998776654
No 158
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=83.82 E-value=7.1 Score=36.99 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=48.4
Q ss_pred ccccccCCCCCCCCCCCCEEEEeCCCCCC-CCCC-cCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHHHh----
Q 039121 41 TTFCAHCPAPDPSLNYRPVIGILSHPGDG-ASGR-LSNATNASYISASYVKFAESGGARVIPLIF-NEPEEILFEK---- 113 (232)
Q Consensus 41 ~~~~~~~~~~~~~~~~~PvIGI~~~~~~~-~~~~-~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~~~---- 113 (232)
+.+..++.-..-....||.|||++.-.+- ..|. ...++-.......+..++++.|++++.... ..+.+.+.+.
T Consensus 161 i~lLas~G~~~V~V~~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a 240 (411)
T PRK10680 161 LPVLASLGIAEVPVVRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEA 240 (411)
T ss_pred HHHHHhCCCCeEEecCCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHh
Confidence 34444455555555678999998642211 0010 011111122222344578999998765543 3344444433
Q ss_pred hcCCCEEEECCCCCCC
Q 039121 114 LELVNGILYTGGWAKS 129 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~ 129 (232)
.+.+|-||.+||....
T Consensus 241 ~~~~DlvIttGG~S~G 256 (411)
T PRK10680 241 DSQADVVISSGGVSVG 256 (411)
T ss_pred ccCCCEEEEcCCCCCC
Confidence 3468999999998743
No 159
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=83.68 E-value=7.3 Score=37.00 Aligned_cols=88 Identities=14% Similarity=0.060 Sum_probs=48.3
Q ss_pred ccccccCCCCCCCCCCCCEEEEeCCCCCCC-CCC-cCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHHH----h
Q 039121 41 TTFCAHCPAPDPSLNYRPVIGILSHPGDGA-SGR-LSNATNASYISASYVKFAESGGARVIPLIF-NEPEEILFE----K 113 (232)
Q Consensus 41 ~~~~~~~~~~~~~~~~~PvIGI~~~~~~~~-~~~-~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~~----~ 113 (232)
+.+..++.-..-....+|.|||++.-.+-. .|. +..++-.+-....+...+++.|+++..... ..+.+.+.+ .
T Consensus 177 i~~Las~G~~~V~V~~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a 256 (419)
T PRK14690 177 LALLSAVGLTRVSVRRPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRA 256 (419)
T ss_pred HHHHHhCCCCeeEeecCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHh
Confidence 344455555555566789999986532110 010 011111122222344568999998865543 334444433 3
Q ss_pred hcCCCEEEECCCCCC
Q 039121 114 LELVNGILYTGGWAK 128 (232)
Q Consensus 114 l~~~dGlIl~GG~~~ 128 (232)
++.+|-||.+||...
T Consensus 257 ~~~~DlIItTGG~S~ 271 (419)
T PRK14690 257 AAEADVILTSGGASA 271 (419)
T ss_pred CccCCEEEEcCCccC
Confidence 456899999998774
No 160
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=83.22 E-value=7.7 Score=36.32 Aligned_cols=89 Identities=21% Similarity=0.206 Sum_probs=49.7
Q ss_pred ccccccCCCCCCCCCCCCEEEEeCCCCCCC-CC-CcCCccchhhhHHHHHHHHHhCCCeEEEEeCC-CChHHH----HHh
Q 039121 41 TTFCAHCPAPDPSLNYRPVIGILSHPGDGA-SG-RLSNATNASYISASYVKFAESGGARVIPLIFN-EPEEIL----FEK 113 (232)
Q Consensus 41 ~~~~~~~~~~~~~~~~~PvIGI~~~~~~~~-~~-~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~-~~~e~l----~~~ 113 (232)
+.+-.++.-..-....+|.|||.+.-.+-. .| .+..++-.+.....+..++++.|+++...... .+.+.+ .+.
T Consensus 152 i~~Las~Gi~~v~V~~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a 231 (394)
T cd00887 152 IGLLASLGIAEVPVYRRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEA 231 (394)
T ss_pred HHHHHhCCCCEEEEecCCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHH
Confidence 444455555555556789999987532211 01 01112222222334445688899988765433 333433 344
Q ss_pred hcCCCEEEECCCCCCC
Q 039121 114 LELVNGILYTGGWAKS 129 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~ 129 (232)
++.+|-||.+||....
T Consensus 232 ~~~~DliittGG~s~g 247 (394)
T cd00887 232 LEEADVVITSGGVSVG 247 (394)
T ss_pred hhCCCEEEEeCCCCCC
Confidence 4568999999998743
No 161
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=82.25 E-value=3 Score=32.88 Aligned_cols=93 Identities=18% Similarity=0.251 Sum_probs=53.5
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC------------------hHHHHHhhcCCCEE
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP------------------EEILFEKLELVNGI 120 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~------------------~e~l~~~l~~~dGl 120 (232)
+++|.+.+... ..+..+...+.+.+++.|+++..+....- .+++.+.+..+|+|
T Consensus 3 ilii~gS~r~~--------~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~i 74 (152)
T PF03358_consen 3 ILIINGSPRKN--------SNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGI 74 (152)
T ss_dssp EEEEESSSSTT--------SHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEE
T ss_pred EEEEECcCCCC--------CHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeE
Confidence 56666666422 24567777888889999999988875431 12344556789999
Q ss_pred EECCCCCCCccChhHHHHHHHHHHH-hcCCCCCccEeehhH
Q 039121 121 LYTGGWAKSGLYYDIVEKIFKKILE-KNDAGDHFPVYAICL 160 (232)
Q Consensus 121 Il~GG~~~~~~~~~~~~~~~~~~l~-~~~~~~~~PILGICl 160 (232)
|+.- |.....+....+.++++.-. ....-++||+..|+-
T Consensus 75 I~~s-P~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~ 114 (152)
T PF03358_consen 75 IFAS-PVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAV 114 (152)
T ss_dssp EEEE-EEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEE
T ss_pred EEee-cEEcCcCChhhhHHHHHhccccccccCCCEEEEEEE
Confidence 9862 11111122345555555531 011234688877753
No 162
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=81.88 E-value=7.9 Score=38.12 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=56.2
Q ss_pred ceeccCCCCCCCCccccccccCCCCCCCCCCCCEEEEeCCCCCCC-CCC-cCCccchhhhHHHHHHHHHhCCCeEEEEeC
Q 039121 26 TILLPSQQHNADSVSTTFCAHCPAPDPSLNYRPVIGILSHPGDGA-SGR-LSNATNASYISASYVKFAESGGARVIPLIF 103 (232)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PvIGI~~~~~~~~-~~~-~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~ 103 (232)
.++||.... .....+.+..++.-..-....||.|||.+.=..-. .|. +..++-.......+..++++.|+++.....
T Consensus 149 elll~~G~~-L~p~~IglLas~Gi~~V~V~~rprV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~~G~~v~~~~i 227 (546)
T PRK14497 149 SIILRKGEV-ISHEKIGLLASLGISSVKVYEKPKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKSEGYKIVGLSL 227 (546)
T ss_pred CEEECCCCC-CCHHHHHHHHhCCCCEEeeccCCEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHHCCCEEEEEEE
Confidence 445554443 12333455566666666777899999986432110 011 111111122222344568889998765543
Q ss_pred -CCChHHHHH----hhcCCCEEEECCCCCC
Q 039121 104 -NEPEEILFE----KLELVNGILYTGGWAK 128 (232)
Q Consensus 104 -~~~~e~l~~----~l~~~dGlIl~GG~~~ 128 (232)
..+.+.+.+ .++.+|-||++||...
T Consensus 228 v~Dd~e~i~~~l~~al~~~DlVIttGGtS~ 257 (546)
T PRK14497 228 LSDDKESIKNEIKRAISVADVLILTGGTSA 257 (546)
T ss_pred eCCCHHHHHHHHHHhhhcCCEEEEcCCccC
Confidence 334454544 3456899999999864
No 163
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=81.78 E-value=4.5 Score=36.51 Aligned_cols=83 Identities=13% Similarity=0.017 Sum_probs=49.3
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh--------HHHHHhhcCCCEEEECCCCCCCc
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE--------EILFEKLELVNGILYTGGWAKSG 130 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~--------e~l~~~l~~~dGlIl~GG~~~~~ 130 (232)
.|||..++... ...-+...+.+++++.|..+......... ...++..+.+|.+|.-||.+
T Consensus 7 ~v~iv~~~~~~---------~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG--- 74 (291)
T PRK02155 7 TVALIGRYQTP---------GIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDG--- 74 (291)
T ss_pred EEEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcH---
Confidence 58999886532 23345678889999999887664311100 01122223589999999876
Q ss_pred cChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 131 LYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
.....++... ..++|+|||-.|.
T Consensus 75 ----t~l~~~~~~~-----~~~~pilGIn~G~ 97 (291)
T PRK02155 75 ----TMLGIGRQLA-----PYGVPLIGINHGR 97 (291)
T ss_pred ----HHHHHHHHhc-----CCCCCEEEEcCCC
Confidence 1112222221 2469999998875
No 164
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=81.73 E-value=8 Score=31.26 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC
Q 039121 47 CPAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF 103 (232)
Q Consensus 47 ~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~ 103 (232)
-|+.+.....||+|||.+-..-. ...-|. ...+||+++|++.+....
T Consensus 81 f~p~f~~~~~k~vIgvVTK~DLa---------ed~dI~-~~~~~L~eaGa~~IF~~s 127 (148)
T COG4917 81 FPPGFLDIGVKKVIGVVTKADLA---------EDADIS-LVKRWLREAGAEPIFETS 127 (148)
T ss_pred CCcccccccccceEEEEeccccc---------chHhHH-HHHHHHHHcCCcceEEEe
Confidence 44556667789999999976421 122332 346799999998876653
No 165
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=80.62 E-value=11 Score=31.87 Aligned_cols=58 Identities=26% Similarity=0.413 Sum_probs=40.5
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC-----------------------hHHHHHhh
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP-----------------------EEILFEKL 114 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~-----------------------~e~l~~~l 114 (232)
.+++|+..|.. ...+.-+.....+.+++.|+++..+..... .+++.+.+
T Consensus 2 ki~~I~gs~r~--------~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l 73 (207)
T COG0655 2 KILGINGSPRS--------NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKL 73 (207)
T ss_pred eeeEEEecCCC--------CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHH
Confidence 36777777653 125667778888999999998887765421 24444556
Q ss_pred cCCCEEEEC
Q 039121 115 ELVNGILYT 123 (232)
Q Consensus 115 ~~~dGlIl~ 123 (232)
..+|||||.
T Consensus 74 ~~aD~iI~g 82 (207)
T COG0655 74 LEADGIIFG 82 (207)
T ss_pred HHCCEEEEe
Confidence 789999996
No 166
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=80.34 E-value=14 Score=36.52 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=35.7
Q ss_pred ccCCCCCCCCCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC
Q 039121 45 AHCPAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF 103 (232)
Q Consensus 45 ~~~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~ 103 (232)
-++.-++..+ .||+|||.....+...+ ...-.-++..+.+-++++|+.+..++.
T Consensus 20 ~a~G~~~edl-~kP~IgI~ns~se~~Pc----h~hl~~la~~Vk~gi~~aGg~p~ef~t 73 (552)
T PRK00911 20 RATGLTDEDF-DKPFIGIANSWNEITPC----NIHLNELADAVKEGVRAAGGVPFEFNT 73 (552)
T ss_pred HHcCCChHHh-cCCEEEEeccccccccc----hhhHHHHHHHHHHHHHHcCCEeEEeCC
Confidence 3455555555 59999999987664322 123344566677788889988876643
No 167
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=80.00 E-value=16 Score=30.18 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=44.4
Q ss_pred HHHHHHhCCCeEEEEeC-CCChHH----HHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 87 YVKFAESGGARVIPLIF-NEPEEI----LFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 87 ~v~~l~~~G~~vv~i~~-~~~~e~----l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
+.+++++.|+++..+.. ..+.+. +.+.++.+|-||.+||-...+. +..++.+..++ ++|+.+.=--
T Consensus 24 l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~--D~t~ea~~~~~-------~~~l~~~~e~ 94 (170)
T cd00885 24 LAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHD--DLTREAVAKAF-------GRPLVLDEEA 94 (170)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCC--ChHHHHHHHHh-------CCCcccCHHH
Confidence 34568999998765432 233333 3344457899999998764332 23444444444 2566666666
Q ss_pred HHHHHHHHc
Q 039121 162 FELLSMIVS 170 (232)
Q Consensus 162 ~QlL~~~~G 170 (232)
++.|-..+.
T Consensus 95 ~~~i~~~~~ 103 (170)
T cd00885 95 LERIEARFA 103 (170)
T ss_pred HHHHHHHHH
Confidence 666666554
No 168
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.81 E-value=5.5 Score=36.03 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=50.0
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC--------hHHHHHhhcCCCEEEECCCCCCCc
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP--------EEILFEKLELVNGILYTGGWAKSG 130 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~--------~e~l~~~l~~~dGlIl~GG~~~~~ 130 (232)
.|||..++... ....+...+.+++++.|..+.+...... ..+.....+.+|-||.-||.+
T Consensus 6 ~v~iv~~~~k~---------~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG--- 73 (295)
T PRK01231 6 NIGLIGRLGSS---------SVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDG--- 73 (295)
T ss_pred EEEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcH---
Confidence 58999887542 3445677889999999988776542110 001112223578888888876
Q ss_pred cChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 131 LYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
......+.+. ..++|||||-.|.
T Consensus 74 ----t~l~~~~~~~-----~~~~Pvlgin~G~ 96 (295)
T PRK01231 74 ----SLLGAARALA-----RHNVPVLGINRGR 96 (295)
T ss_pred ----HHHHHHHHhc-----CCCCCEEEEeCCc
Confidence 1112222221 3469999998874
No 169
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=78.41 E-value=8.7 Score=30.03 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCeEEEEeC-CCChHHHH----HhhcCCCEEEECCCCCC
Q 039121 86 SYVKFAESGGARVIPLIF-NEPEEILF----EKLELVNGILYTGGWAK 128 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~-~~~~e~l~----~~l~~~dGlIl~GG~~~ 128 (232)
.+.+++++.|+++..... ..+.+.+. +.++.+|-||.+||...
T Consensus 22 ~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~ 69 (135)
T smart00852 22 ALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGP 69 (135)
T ss_pred HHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 344579999987653322 23444443 33456899999998764
No 170
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=78.10 E-value=15 Score=29.48 Aligned_cols=44 Identities=25% Similarity=0.306 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCeEEEEeC-CCChHHHHH----hhc--CCCEEEECCCCCCC
Q 039121 86 SYVKFAESGGARVIPLIF-NEPEEILFE----KLE--LVNGILYTGGWAKS 129 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~-~~~~e~l~~----~l~--~~dGlIl~GG~~~~ 129 (232)
.+.+++++.|+++..... ..+.+++.+ .++ .+|-||.+||....
T Consensus 24 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g 74 (152)
T cd00886 24 ALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLA 74 (152)
T ss_pred HHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 345579999998765543 334454443 334 68999999998743
No 171
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=76.98 E-value=14 Score=28.96 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCeEEEEeC-CCChHHH----HHhhcCCCEEEECCCCCCC
Q 039121 86 SYVKFAESGGARVIPLIF-NEPEEIL----FEKLELVNGILYTGGWAKS 129 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~-~~~~e~l----~~~l~~~dGlIl~GG~~~~ 129 (232)
.+.+++++.|+++..... ..+.+.+ .+.++++|-||.+||-...
T Consensus 23 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g 71 (133)
T cd00758 23 ALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVG 71 (133)
T ss_pred HHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCC
Confidence 445578999998865533 3344443 3444568999999987743
No 172
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=76.40 E-value=20 Score=30.41 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=30.6
Q ss_pred HHHHHHhCCCe---EEEEeCCCChHH----HHHhhc--CCCEEEECCCCCCCccChhHHHHHHHHHHH
Q 039121 87 YVKFAESGGAR---VIPLIFNEPEEI----LFEKLE--LVNGILYTGGWAKSGLYYDIVEKIFKKILE 145 (232)
Q Consensus 87 ~v~~l~~~G~~---vv~i~~~~~~e~----l~~~l~--~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~ 145 (232)
+..++++.|+. +.......+.+. +.+.++ .+|-||.+||....+. +...+.++.+++
T Consensus 28 L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~r--DvTpeAv~~l~~ 93 (193)
T PRK09417 28 LEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARR--DVTPEATLAVAD 93 (193)
T ss_pred HHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCC--CcHHHHHHHHhC
Confidence 34567888643 222122233343 334443 6899999999875432 233445555553
No 173
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=75.71 E-value=11 Score=40.07 Aligned_cols=66 Identities=23% Similarity=0.366 Sum_probs=45.0
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC---ChHHHHHhhcC-----CCEEEECCCC
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE---PEEILFEKLEL-----VNGILYTGGW 126 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~---~~e~l~~~l~~-----~dGlIl~GG~ 126 (232)
..+|+|||+....... .....++ ..+++.||+.|+.|+++.... ..+.+++.+.. +|+||-+-+.
T Consensus 69 ~~~P~VgIlfyrs~~~------~g~~~~v-daLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f 141 (1098)
T PF02514_consen 69 PNRPTVGILFYRSYWL------SGNTAVV-DALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGF 141 (1098)
T ss_pred CCCCEEEEEeehhhhh------cCCcHHH-HHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCcc
Confidence 4689999998765322 1234455 478899999999999987542 33445565654 8998877655
Q ss_pred C
Q 039121 127 A 127 (232)
Q Consensus 127 ~ 127 (232)
.
T Consensus 142 ~ 142 (1098)
T PF02514_consen 142 S 142 (1098)
T ss_pred c
Confidence 4
No 174
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=75.57 E-value=5.1 Score=29.41 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCC
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGW 126 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~ 126 (232)
++.++|++.|++++.+.... .++.+|++|++|..
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~-------~~~~~daiVvtG~~ 45 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQ-------DLQNVDAIVVTGQD 45 (80)
T ss_pred HHHHHHHHCCCEEEecCCcc-------ccCCcCEEEEECCC
Confidence 56778999999999875322 25689999999954
No 175
>PRK03094 hypothetical protein; Provisional
Probab=75.44 E-value=5.5 Score=29.27 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCC
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGW 126 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~ 126 (232)
.+.++|++.|.+|+.+....+ ++.+|++|++|-.
T Consensus 12 ~i~~~L~~~GYeVv~l~~~~~-------~~~~Da~VitG~d 45 (80)
T PRK03094 12 DVQQALKQKGYEVVQLRSEQD-------AQGCDCCVVTGQD 45 (80)
T ss_pred HHHHHHHHCCCEEEecCcccc-------cCCcCEEEEeCCC
Confidence 566789999999998753221 4689999999943
No 176
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.65 E-value=7.1 Score=38.49 Aligned_cols=87 Identities=21% Similarity=0.318 Sum_probs=51.1
Q ss_pred CCCCE-EEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh-H----H-H--HHhhcCCCEEEECCC
Q 039121 55 NYRPV-IGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE-E----I-L--FEKLELVNGILYTGG 125 (232)
Q Consensus 55 ~~~Pv-IGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~-e----~-l--~~~l~~~dGlIl~GG 125 (232)
..+|. |||..++... ...-+...+.+|+++.|.++.+-...... . + . ....+.+|.+|.-||
T Consensus 287 ~~~~~~i~iv~~~~~~---------~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGG 357 (569)
T PRK14076 287 RIKPTKFGIVSRIDNE---------EAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGG 357 (569)
T ss_pred ccCCcEEEEEcCCCCH---------HHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECC
Confidence 34565 9999887532 23345677888999999887664321100 0 0 0 011236899999999
Q ss_pred CCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 126 WAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
.+ ..... .+... ..++|||||-.|.
T Consensus 358 DG---T~L~a----a~~~~-----~~~~PilGin~G~ 382 (569)
T PRK14076 358 DG---TVLRA----SKLVN-----GEEIPIICINMGT 382 (569)
T ss_pred cH---HHHHH----HHHhc-----CCCCCEEEEcCCC
Confidence 76 12111 22221 2369999998874
No 177
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=74.02 E-value=8.3 Score=37.61 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=47.5
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHH-hCCCeEEEEeCCCC-----------------hHHHHHhhcCCCEE
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAE-SGGARVIPLIFNEP-----------------EEILFEKLELVNGI 120 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~-~~G~~vv~i~~~~~-----------------~e~l~~~l~~~dGl 120 (232)
.|||...+... ....+...+.+|++ ..|..+.+-+.... .+.+......+|.|
T Consensus 196 ~VgIV~n~~k~---------~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlV 266 (508)
T PLN02935 196 TVLIITKPNST---------SVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLV 266 (508)
T ss_pred EEEEEecCCCH---------HHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEE
Confidence 58999887542 23345678888998 47777765331100 01111122368999
Q ss_pred EECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 121 LYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 121 Il~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
|.-||.+ .++.. .+.. ....+|||||-.|
T Consensus 267 IsiGGDG---TlL~A----ar~~-----~~~~iPILGIN~G 295 (508)
T PLN02935 267 ITLGGDG---TVLWA----ASMF-----KGPVPPVVPFSMG 295 (508)
T ss_pred EEECCcH---HHHHH----HHHh-----ccCCCcEEEEeCC
Confidence 9999976 12211 2222 1235899999866
No 178
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.41 E-value=6.4 Score=35.26 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCh--------HHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEe
Q 039121 85 ASYVKFAESGGARVIPLIFNEPE--------EILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVY 156 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~--------e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PIL 156 (232)
..+.+|+++.|..+..-...... ....+..+.+|-+|.-||.+ ... ...+.+. ..++|||
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG---T~L----~aa~~~~-----~~~~Pil 70 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDG---NML----GRARVLA-----KYDIPLI 70 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcH---HHH----HHHHHhc-----cCCCcEE
Confidence 45677899999888764321100 01122233689999999976 111 1122221 2369999
Q ss_pred ehhHH
Q 039121 157 AICLG 161 (232)
Q Consensus 157 GIClG 161 (232)
||-.|
T Consensus 71 gIn~G 75 (272)
T PRK02231 71 GINRG 75 (272)
T ss_pred EEeCC
Confidence 99877
No 179
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=72.66 E-value=15 Score=36.54 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=48.4
Q ss_pred ccccccCCCCCCCCCCCCEEEEeCCCCCCC-CCC-cCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHH----Hh
Q 039121 41 TTFCAHCPAPDPSLNYRPVIGILSHPGDGA-SGR-LSNATNASYISASYVKFAESGGARVIPLIF-NEPEEILF----EK 113 (232)
Q Consensus 41 ~~~~~~~~~~~~~~~~~PvIGI~~~~~~~~-~~~-~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~----~~ 113 (232)
+.+-.+++...-....+|.|||.+.-.+-. .|. ...++-.+.....+..++++.|++++.... ..+.+.+. +.
T Consensus 170 i~~las~g~~~v~v~~~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~ 249 (633)
T PRK14498 170 IGALAAGGVAEVPVYKKPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKA 249 (633)
T ss_pred HHHHHHCCCCEEEEecCcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH
Confidence 344444555555556789999986432110 010 011111122233445679999998865542 33444443 33
Q ss_pred hcCCCEEEECCCCCC
Q 039121 114 LELVNGILYTGGWAK 128 (232)
Q Consensus 114 l~~~dGlIl~GG~~~ 128 (232)
++.+|-||.+||...
T Consensus 250 ~~~~D~iIttGG~s~ 264 (633)
T PRK14498 250 LKECDLVLLSGGTSA 264 (633)
T ss_pred HhcCCEEEECCCCcC
Confidence 356899999999864
No 180
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=71.80 E-value=9.1 Score=30.92 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=31.7
Q ss_pred hcCCCEEEECCCCCCCc--cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCc
Q 039121 114 LELVNGILYTGGWAKSG--LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSED 172 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~~--~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~ 172 (232)
+..+|.||+-||-+++. .-.+.++++++. ...+|+.|+| +|-|....|-+
T Consensus 83 ~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee-------~~~kkliGvC--fm~mF~ragW~ 134 (154)
T COG4090 83 LNSADVVVLLGGLAMPKIGVTPDDAKELLEE-------LGNKKLIGVC--FMNMFERAGWD 134 (154)
T ss_pred cccccEEEEEcccccCcCCCCHHHHHHHHHh-------cCCCceEEee--HHHHHHHcCcc
Confidence 56799999999977421 112345555552 1247999999 56666555554
No 181
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=71.20 E-value=19 Score=35.83 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=48.2
Q ss_pred ccccccCCCCCCCCCCCCEEEEeCCCCCCC-CCCc-CCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHH----Hh
Q 039121 41 TTFCAHCPAPDPSLNYRPVIGILSHPGDGA-SGRL-SNATNASYISASYVKFAESGGARVIPLIF-NEPEEILF----EK 113 (232)
Q Consensus 41 ~~~~~~~~~~~~~~~~~PvIGI~~~~~~~~-~~~~-~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~----~~ 113 (232)
+.+-.++.-..-....+|.|||.+.-..-. .|.. ..++-.......+..++++.|+.+..... ..+.+.+. +.
T Consensus 351 i~lLAs~Gi~~V~V~~~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a 430 (597)
T PRK14491 351 QGLLASLGFAEVPVFRRPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQA 430 (597)
T ss_pred HHHHHHCCCCeEEeccCCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHh
Confidence 344445555555556789999986432110 0100 01111112222344578999998865432 33444443 33
Q ss_pred hcCCCEEEECCCCCCC
Q 039121 114 LELVNGILYTGGWAKS 129 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~ 129 (232)
++.+|-||.+||....
T Consensus 431 ~~~~DlIIttGG~s~G 446 (597)
T PRK14491 431 AAQADVVISSGGVSVG 446 (597)
T ss_pred hhcCCEEEEcCCccCC
Confidence 4568999999998743
No 182
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=70.92 E-value=39 Score=28.42 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
.-+...+.+.+++.|..+++.....+.+. ++..+ .++||||+.++
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 15 QAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 34456777888999998887654333322 22222 37999999764
No 183
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.16 E-value=10 Score=33.97 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=48.6
Q ss_pred EEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC----hH--HHHHhh-cCCCEEEECCCCCCCccC
Q 039121 60 IGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP----EE--ILFEKL-ELVNGILYTGGWAKSGLY 132 (232)
Q Consensus 60 IGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~----~e--~l~~~l-~~~dGlIl~GG~~~~~~~ 132 (232)
|||..+++.. ....+.+.+.+|+++.|.++.+...... .. ...... +.+|.+|.-||.+
T Consensus 3 v~iv~~~~k~---------~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG----- 68 (277)
T PRK03708 3 FGIVARRDKE---------EALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG----- 68 (277)
T ss_pred EEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH-----
Confidence 7888776532 3344567888999999998877532110 00 000111 2689999999976
Q ss_pred hhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 133 YDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 133 ~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
+.-...+ . .+.++||+||=.|.
T Consensus 69 --TlL~a~~-~-----~~~~~pi~gIn~G~ 90 (277)
T PRK03708 69 --TILRIEH-K-----TKKDIPILGINMGT 90 (277)
T ss_pred --HHHHHHH-h-----cCCCCeEEEEeCCC
Confidence 1111222 1 23469999998875
No 184
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=69.31 E-value=43 Score=30.64 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=41.7
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHHH----hhcC-CCEEEECCCCCC
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF-NEPEEILFE----KLEL-VNGILYTGGWAK 128 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~~----~l~~-~dGlIl~GG~~~ 128 (232)
..+|.+||++.-.+...|... +-....+...+++.|+++..... ..+.+.+.+ .+++ +|-||++||...
T Consensus 157 ~r~~rv~II~TG~Ev~~G~i~-----D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGtsv 231 (312)
T cd03522 157 FRPLRVGLIVTGSEVYGGRIE-----DKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGASV 231 (312)
T ss_pred cCCCEEEEEEcCCcCCCCcEE-----EhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCccc
Confidence 567899998753322222221 11223445578999998865443 334444433 3344 899999999875
Q ss_pred Cc
Q 039121 129 SG 130 (232)
Q Consensus 129 ~~ 130 (232)
++
T Consensus 232 g~ 233 (312)
T cd03522 232 DP 233 (312)
T ss_pred CC
Confidence 54
No 185
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=68.93 E-value=43 Score=28.25 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChH----HHHHhh-cCCCEEEECCCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEE----ILFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e----~l~~~l-~~~dGlIl~GG~ 126 (232)
.-+...+.+.+++.|..++......+.+ .++.+. .++||||+.++.
T Consensus 15 ~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (269)
T cd06281 15 AQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD 65 (269)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3455677788888999987765443332 122322 369999998754
No 186
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=68.40 E-value=51 Score=29.59 Aligned_cols=61 Identities=23% Similarity=0.073 Sum_probs=39.9
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
++.||+...-.+. ...+-+...+.+.+++.|..+++.....+.+. ++.++ .++||||+.+.
T Consensus 25 ~~~Ig~i~~~~~~--------~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 25 EVKIGMAIDDLRL--------ERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred CceEEEEecCCCc--------hHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6889998843221 23445667788889999999888765433332 22222 27999999863
No 187
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=68.30 E-value=55 Score=27.58 Aligned_cols=46 Identities=11% Similarity=0.019 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..-+...+.+.+++.|..+++.....+.+. ++.+. .++||+|+.+.
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 14 FPAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS 64 (273)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344556777888889999877664433221 22222 36999999764
No 188
>PLN02727 NAD kinase
Probab=68.26 E-value=11 Score=39.33 Aligned_cols=83 Identities=16% Similarity=0.043 Sum_probs=48.1
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC-CCeEEEEeCCCCh---------------HHHHHhhcCCCEEE
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESG-GARVIPLIFNEPE---------------EILFEKLELVNGIL 121 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~-G~~vv~i~~~~~~---------------e~l~~~l~~~dGlI 121 (232)
..|||...+.+ ........+++||.+. |.++.+-+..... .+..+..+.+|.||
T Consensus 679 rtVgIV~K~~~----------ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVI 748 (986)
T PLN02727 679 KTVLLLKKLGQ----------ELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVA 748 (986)
T ss_pred CEEEEEcCCcH----------HHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEE
Confidence 35899888753 1234556788999987 8777653211100 01112223689999
Q ss_pred ECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 122 YTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 122 l~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
.-||.+ .++.. .+... +..+|||||-+|.
T Consensus 749 vLGGDG---TlLrA----ar~~~-----~~~iPILGINlGr 777 (986)
T PLN02727 749 CLGGDG---VILHA----SNLFR-----GAVPPVVSFNLGS 777 (986)
T ss_pred EECCcH---HHHHH----HHHhc-----CCCCCEEEEeCCC
Confidence 999976 12111 22221 2359999998873
No 189
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.03 E-value=42 Score=28.41 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTG 124 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~G 124 (232)
..-+...+.+.+++.|..++......+.+. ++... .++||||+.+
T Consensus 14 ~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 14 FAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINP 63 (282)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 344566777888899998877654333322 22222 2699999975
No 190
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=67.74 E-value=24 Score=27.85 Aligned_cols=78 Identities=17% Similarity=0.100 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCeEEEEeC-CCChHHHHH----hhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 86 SYVKFAESGGARVIPLIF-NEPEEILFE----KLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~-~~~~e~l~~----~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.+.+++++.|+++..... ..+.+.+.+ .+++.|-||.+||-...+. +..++.++.+. ..++-|.-.
T Consensus 21 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~~--D~t~~a~~~~~-------~~~l~~~~~ 91 (144)
T PF00994_consen 21 FLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGPGPD--DVTPEALAEAG-------GRELPGFEE 91 (144)
T ss_dssp HHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSSSTT--CHHHHHHHHHS-------SEE-HHHHH
T ss_pred HHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCcccC--CcccHHHHHhc-------CcccccChH
Confidence 445678999998764322 234444443 3457899999998874332 23334444433 245666665
Q ss_pred HHHHHHHHHcCc
Q 039121 161 GFELLSMIVSED 172 (232)
Q Consensus 161 G~QlL~~~~GG~ 172 (232)
=++-+....|..
T Consensus 92 ~~~~~~~~pg~p 103 (144)
T PF00994_consen 92 LFRGVSMRPGKP 103 (144)
T ss_dssp HHHHHHHHSTTT
T ss_pred HHHHHHHHhhcc
Confidence 666666666653
No 191
>PLN02929 NADH kinase
Probab=67.32 E-value=8.4 Score=35.09 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
.....++|++.|.++..+.- .++.+....+|.||.-||.+ ... .....+ ..++||+||-.|
T Consensus 36 ~~~~~~~L~~~gi~~~~v~r----~~~~~~~~~~Dlvi~lGGDG---T~L----~aa~~~------~~~iPvlGIN~G 96 (301)
T PLN02929 36 VNFCKDILQQKSVDWECVLR----NELSQPIRDVDLVVAVGGDG---TLL----QASHFL------DDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHHHHcCCEEEEeec----cccccccCCCCEEEEECCcH---HHH----HHHHHc------CCCCcEEEEECC
Confidence 34567889999998855431 11233456789999999986 111 112222 346999999988
No 192
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=67.05 E-value=46 Score=27.96 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..-+...+.+.+++.|.++.+.....+.+. +...+ .++||+|+.+.
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 14 YIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 344556777788889998877654333221 22222 37999999753
No 193
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=66.95 E-value=52 Score=27.61 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=30.5
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhh-----cCCCEEEECCCC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEILFEKL-----ELVNGILYTGGW 126 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l-----~~~dGlIl~GG~ 126 (232)
...+...+.+++++.|..+.+.....+.+...+.+ .++||||+.+..
T Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (264)
T cd06274 14 FARIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSL 65 (264)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 34455667778888999988876544433222222 379999998754
No 194
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=66.52 E-value=66 Score=27.15 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCC-hHHHHHhh--cCCCEEEECCCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEP-EEILFEKL--ELVNGILYTGGW 126 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~-~e~l~~~l--~~~dGlIl~GG~ 126 (232)
..+.....+.+++.|..+.+...+.+ .+.+.+.+ .++||||+.+..
T Consensus 26 ~~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~ 74 (275)
T cd06295 26 LSLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQH 74 (275)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCC
Confidence 33445667788889999887765433 23333333 379999997643
No 195
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=65.89 E-value=2.4 Score=37.88 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=46.3
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC-CCeEEEEeCCC---------------------------ChHHH
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESG-GARVIPLIFNE---------------------------PEEIL 110 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~-G~~vv~i~~~~---------------------------~~e~l 110 (232)
.|||..+|... ....+...++++|++. +..+.. .... .....
T Consensus 1 kVgii~np~~~---------~~~~~~~~~~~~L~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (285)
T PF01513_consen 1 KVGIIANPNKP---------EAIELANELARWLLEKQGIEVLV-EGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALE 70 (285)
T ss_dssp -EEEEESSCGH---------CCCHHHHHHHHHHHHTTTEEEEE-EHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCH
T ss_pred CEEEEEcCCCH---------HHHHHHHHHHHHHHhCCCEEEEE-ChHHHHHHHHhccccccccccccccccccccchhhh
Confidence 48999988732 2335567889999998 544333 1110 00001
Q ss_pred HHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 111 FEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 111 ~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
....+.+|.+|.-||.+ +.+...+... ..++||+||=.|
T Consensus 71 ~~~~~~~D~ii~lGGDG-------T~L~~~~~~~-----~~~~Pilgin~G 109 (285)
T PF01513_consen 71 EMLEEGVDLIIVLGGDG-------TFLRAARLFG-----DYDIPILGINTG 109 (285)
T ss_dssp HHHCCCSSEEEEEESHH-------HHHHHHHHCT-----TST-EEEEEESS
T ss_pred hhcccCCCEEEEECCCH-------HHHHHHHHhc-----cCCCcEEeecCC
Confidence 11235899999999976 3333333322 246999999866
No 196
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=64.84 E-value=56 Score=27.23 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 83 ISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 83 i~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
+...+.+.+++.|..+.......+.+. ++.++ .++||||+.+..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 65 (268)
T cd01575 17 VLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLE 65 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCC
Confidence 445677788889998887765433221 22322 379999998643
No 197
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=64.73 E-value=64 Score=28.24 Aligned_cols=68 Identities=7% Similarity=0.138 Sum_probs=41.0
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEe-CC---------CChHHHHHhh-----cCCCEEEECCCCCCCccChhHHHHHHHHHH
Q 039121 80 ASYISASYVKFAESGGARVIPLI-FN---------EPEEILFEKL-----ELVNGILYTGGWAKSGLYYDIVEKIFKKIL 144 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~-~~---------~~~e~l~~~l-----~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l 144 (232)
...+.....+++++.|.+++-+. .. .+++.+.+.+ ..+|+|++++..--. -..-+.+|..+
T Consensus 130 ~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt----~~vi~~lE~~l 205 (239)
T TIGR02990 130 TPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALRA----ATCAQRIEQAI 205 (239)
T ss_pred cHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchh----HHHHHHHHHHH
Confidence 44677888999999999887652 11 1344443333 258999999765411 11222334333
Q ss_pred HhcCCCCCccEeeh
Q 039121 145 EKNDAGDHFPVYAI 158 (232)
Q Consensus 145 ~~~~~~~~~PILGI 158 (232)
++||+-.
T Consensus 206 -------GkPVlsS 212 (239)
T TIGR02990 206 -------GKPVVTS 212 (239)
T ss_pred -------CCCEEEH
Confidence 5999876
No 198
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=64.73 E-value=52 Score=27.41 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 83 ISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 83 i~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
+.....+.+++.|..++......+.+. +..+. .++||+|+.++.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 65 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVAD 65 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 445667788889999888765433222 22222 369999997654
No 199
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=64.41 E-value=22 Score=35.44 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=37.6
Q ss_pred ccccCCCCCCCCC-CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEe
Q 039121 43 FCAHCPAPDPSLN-YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLI 102 (232)
Q Consensus 43 ~~~~~~~~~~~~~-~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~ 102 (232)
+.-++.-++..++ .||+|||.....+...++ ....-+...+.+-++++|+.+..++
T Consensus 32 ~~~a~G~~~ed~~~~KP~IgI~ns~se~~Pch----~hl~~la~~vk~gI~~aGG~p~ef~ 88 (596)
T PRK13017 32 RYMNYGLTREELQSGKPIIGIAQTGSDLSPCN----RHHLELAERVKEGIRDAGGIPMEFP 88 (596)
T ss_pred HHHHcCCChHHhccCCCEEEEEecccCCcCch----hhHHHHHHHHHHHHHHcCCeeEecc
Confidence 3345667777775 799999998776543321 2333455666778888998877655
No 200
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=64.23 E-value=55 Score=27.25 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..+...+.+.+++.|..++......+.+. ++++. .++||+|+.+.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 15 SRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44556677788889999887765433332 22222 37999999864
No 201
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=63.74 E-value=55 Score=28.19 Aligned_cols=46 Identities=13% Similarity=-0.039 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..-+...+.+.+++.|..+.+.....+.+. ++..+ .++||||+.+.
T Consensus 14 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 14 WIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 344556777788889999888765444332 22222 37999999864
No 202
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=63.64 E-value=56 Score=27.50 Aligned_cols=107 Identities=10% Similarity=0.052 Sum_probs=53.5
Q ss_pred HHHHHHHH-hCCCeEEEEeCCCChHHH-HHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 85 ASYVKFAE-SGGARVIPLIFNEPEEIL-FEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 85 ~s~v~~l~-~~G~~vv~i~~~~~~e~l-~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
..+.+.++ +.|.++... .+.+.+ .+.|+++|.||+...... ......+..++..+++ +++++||..++
T Consensus 22 ~~l~~ll~~~~~~~v~~~---~~~~~~~~~~L~~~Dvvv~~~~~~~--~l~~~~~~al~~~v~~-----Ggglv~lH~~~ 91 (217)
T PF06283_consen 22 KALAQLLEESEGFEVTVT---EDPDDLTPENLKGYDVVVFYNTGGD--ELTDEQRAALRDYVEN-----GGGLVGLHGAA 91 (217)
T ss_dssp HHHHHHHHHTTCEEEEEC---CSGGCTSHHCHCT-SEEEEE-SSCC--GS-HHHHHHHHHHHHT-----T-EEEEEGGGG
T ss_pred HHHHHHhccCCCEEEEEE---eCcccCChhHhcCCCEEEEECCCCC--cCCHHHHHHHHHHHHc-----CCCEEEEcccc
Confidence 34455666 456666553 222222 235789999999875421 1223455666666665 59999998333
Q ss_pred -------HHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhH
Q 039121 163 -------ELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPEL 208 (232)
Q Consensus 163 -------QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l 208 (232)
.-....+||.- ..+....+........ +.++.+++|+++
T Consensus 92 ~~~~~~~~~~~~l~Gg~f------~~h~~~~~~~v~~~~~-~HPi~~gl~~~f 137 (217)
T PF06283_consen 92 TDSFPDWPEYNELLGGYF------KGHPPPQPFTVRVEDP-DHPITRGLPESF 137 (217)
T ss_dssp GCCHTT-HHHHHHHS--S------EEEECEEEEEEEESST-TSCCCTTS-SEE
T ss_pred cccchhHHHHHHeeCccc------cCCCCCceEEEEEcCC-CChhhcCCCCCc
Confidence 22344556652 1111222222222223 578888887655
No 203
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=63.51 E-value=54 Score=27.71 Aligned_cols=46 Identities=15% Similarity=-0.023 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
.-+..+..+..++.|..++......+.+. +..++ .++||||+.+..
T Consensus 15 ~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 65 (273)
T cd06309 15 TAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVV 65 (273)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 34556778888889999888764433322 22222 369999997643
No 204
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=63.36 E-value=64 Score=26.47 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChH----HHHHhh-cCCCEEEECCCCC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEE----ILFEKL-ELVNGILYTGGWA 127 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e----~l~~~l-~~~dGlIl~GG~~ 127 (232)
...+.....+++++.|..+++.....+.+ .++... .++|++|+.+...
T Consensus 14 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~ 66 (264)
T cd06267 14 FAELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRL 66 (264)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCc
Confidence 34455677777888898888776655432 222223 3799999987654
No 205
>PRK06756 flavodoxin; Provisional
Probab=62.88 E-value=73 Score=24.99 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=30.4
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECC
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTG 124 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~G 124 (232)
++..++..+.+.+++.|..+.++....... . ..+..+|+|+|--
T Consensus 14 nTe~vA~~ia~~l~~~g~~v~~~~~~~~~~-~-~~~~~~d~vi~gs 57 (148)
T PRK06756 14 NTEEMADHIAGVIRETENEIEVIDIMDSPE-A-SILEQYDGIILGA 57 (148)
T ss_pred hHHHHHHHHHHHHhhcCCeEEEeehhccCC-H-HHHhcCCeEEEEe
Confidence 577888888999999998887665432211 1 2256789988853
No 206
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=62.71 E-value=4.8 Score=35.23 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=28.4
Q ss_pred hhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCc
Q 039121 113 KLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSED 172 (232)
Q Consensus 113 ~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~ 172 (232)
+.+.--.||+|||.|.. |-+....+.. +...+..+++--.||||-|- ++|+.
T Consensus 46 W~~~T~lLV~pGGaDlp--Y~~~l~g~g~-a~i~~yvk~GG~fLGiCAG~-----YFg~~ 97 (253)
T COG4285 46 WEETTLLLVFPGGADLP--YVQVLQGLGT-ARIKNYVKEGGNFLGICAGG-----YFGSA 97 (253)
T ss_pred chhceEEEEecCCCCch--HHHHhcchhh-hhHHHHHhcCCeEEEEeccc-----cccce
Confidence 34456789999999842 2122111111 11112223468899999873 45654
No 207
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.50 E-value=21 Score=32.29 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=46.9
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh---HHH-HHhhcCCCEEEECCCCCCCccCh
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE---EIL-FEKLELVNGILYTGGWAKSGLYY 133 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~---e~l-~~~l~~~dGlIl~GG~~~~~~~~ 133 (232)
..|++..+++.. ....+...+.+++++.|.++.+....... +.. ....+.+|.+|.-||.+
T Consensus 4 kkv~lI~n~~~~---------~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG------ 68 (305)
T PRK02645 4 KQVIIAYKAGSS---------QAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG------ 68 (305)
T ss_pred CEEEEEEeCCCH---------HHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH------
Confidence 357777776421 22344567788999999987765432111 001 11123578999998876
Q ss_pred hHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 134 DIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 134 ~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
+.....+... +.++|++||-.
T Consensus 69 -T~l~~~~~~~-----~~~~pv~gin~ 89 (305)
T PRK02645 69 -TVLAAARHLA-----PHDIPILSVNV 89 (305)
T ss_pred -HHHHHHHHhc-----cCCCCEEEEec
Confidence 1112222221 24699999987
No 208
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=62.18 E-value=94 Score=26.85 Aligned_cols=62 Identities=10% Similarity=-0.027 Sum_probs=37.0
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
.+.+||++..... .....-+...+.+.+++.|..++......+.+. ++... .++||+|+.+.
T Consensus 25 ~~~~I~vi~~~~~--------~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 25 AKDTIALVVSTLN--------NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred cCCeEEEEecCCC--------ChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3567898763211 123345566777888889998887654333322 22222 36999999753
No 209
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=61.78 E-value=57 Score=27.26 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChH----HHHHhh--cCCCEEEECCCC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEE----ILFEKL--ELVNGILYTGGW 126 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e----~l~~~l--~~~dGlIl~GG~ 126 (232)
...+...+.+++++.|..+.+...+.+.+ .+.+.+ .++||||+.+..
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (270)
T cd01545 14 VSEIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPL 66 (270)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34455667778888999888776543222 222222 368999998764
No 210
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=61.46 E-value=65 Score=27.07 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHHh-CCCeEEEEeCCCChHH----HHHhhc-CCCEEEECCC
Q 039121 80 ASYISASYVKFAES-GGARVIPLIFNEPEEI----LFEKLE-LVNGILYTGG 125 (232)
Q Consensus 80 ~~yi~~s~v~~l~~-~G~~vv~i~~~~~~e~----l~~~l~-~~dGlIl~GG 125 (232)
...+...+.+++++ .|..+++.....+.+. ++..++ ++||+|+.+.
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 14 LTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 44556677788888 8888877654333222 222222 7999999763
No 211
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=61.11 E-value=79 Score=26.36 Aligned_cols=45 Identities=22% Similarity=0.134 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhhc-CCCEEEECCCC
Q 039121 82 YISASYVKFAESGGARVIPLIFNEPEEI----LFEKLE-LVNGILYTGGW 126 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l~-~~dGlIl~GG~ 126 (232)
.+...+.+++++.|..+..+....+.+. ++.+.. ++||||+.+..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 65 (265)
T cd06299 16 SLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHE 65 (265)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 3456677888899998888765434322 223232 68999998753
No 212
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=61.09 E-value=70 Score=26.74 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhhc-CCCEEEECCC
Q 039121 82 YISASYVKFAESGGARVIPLIFNEPEEI----LFEKLE-LVNGILYTGG 125 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l~-~~dGlIl~GG 125 (232)
-+...+.+.+++.|..+++.....+.+. +..+.. ++||+|+.+.
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 16 RVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3446677888889998887654333332 223333 5899999864
No 213
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=60.99 E-value=75 Score=26.74 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHHHhC---CC--eEEEEeCCCChH----HHHHhh-cCCCEEEECCC
Q 039121 80 ASYISASYVKFAESG---GA--RVIPLIFNEPEE----ILFEKL-ELVNGILYTGG 125 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~---G~--~vv~i~~~~~~e----~l~~~l-~~~dGlIl~GG 125 (232)
.+-+...+.+.+++. |. ++++.....+.+ .++..+ +++||||+.+.
T Consensus 14 ~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 14 RAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred HHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 334556666778778 87 344443332322 222222 37999999764
No 214
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=60.52 E-value=48 Score=27.80 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=51.1
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC-C-------------hHHHHHhhcCCCEEEEC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE-P-------------EEILFEKLELVNGILYT 123 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~-~-------------~e~l~~~l~~~dGlIl~ 123 (232)
.+++|.+.+..+. .+.-+.+.+.+.+++.|.++..+.... + .+.+.+.+..+|+|||.
T Consensus 2 kIl~I~GSpr~~S--------~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~ 73 (191)
T PRK10569 2 RVITLAGSPRFPS--------RSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVA 73 (191)
T ss_pred EEEEEEcCCCCCC--------hHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEE
Confidence 3778888876432 345566777788888899887664321 1 11334556788999885
Q ss_pred CCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 124 GGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 124 GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.|.....+....+.++++.-.. .=+++|++=|+-
T Consensus 74 -tP~Y~~s~pg~LKn~iD~l~~~--~l~~K~v~iiat 107 (191)
T PRK10569 74 -TPVYKASFSGALKTLLDLLPER--ALEHKVVLPLAT 107 (191)
T ss_pred -CCccCCCCCHHHHHHHHhCChh--hhCCCEEEEEEe
Confidence 2221222333455555443211 112467774443
No 215
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=60.28 E-value=43 Score=28.02 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhc
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKN 147 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~ 147 (232)
...+.++..|++++...++ +.+.+.+.++.+|.|++.-+... +........+++.+.+.+
T Consensus 35 ~~~~~l~~~g~~vv~~d~~-~~~~l~~al~g~d~v~~~~~~~~-~~~~~~~~~li~Aa~~ag 94 (233)
T PF05368_consen 35 DRAQQLQALGAEVVEADYD-DPESLVAALKGVDAVFSVTPPSH-PSELEQQKNLIDAAKAAG 94 (233)
T ss_dssp HHHHHHHHTTTEEEES-TT--HHHHHHHHTTCSEEEEESSCSC-CCHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhcccceEeecccC-CHHHHHHHHcCCceEEeecCcch-hhhhhhhhhHHHhhhccc
Confidence 4455688889988766654 56778888999999998877552 223344556667666654
No 216
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.14 E-value=67 Score=27.03 Aligned_cols=47 Identities=15% Similarity=-0.103 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCC--CChHH----HHHhh-cCCCEEEECCCC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFN--EPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~--~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
...+...+.+++++.|..+..+... .+.+. ++.++ .++||||+.+..
T Consensus 14 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~ 67 (273)
T cd06310 14 WQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTD 67 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4456667778888899998877532 23222 22222 369999997643
No 217
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=60.12 E-value=73 Score=26.05 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGWA 127 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~~ 127 (232)
..+...+.+++++.|..++......+.+. +++.+ .++|++|+.+...
T Consensus 15 ~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~ 66 (264)
T cd01537 15 AQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDL 66 (264)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 44556777888889998887766544322 22233 3699999987543
No 218
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=60.11 E-value=46 Score=27.89 Aligned_cols=71 Identities=14% Similarity=0.038 Sum_probs=42.8
Q ss_pred chhhhHHHHHHHHHhCCCeEEEE-eCCCChHH----HHHhh-cCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCC
Q 039121 79 NASYISASYVKFAESGGARVIPL-IFNEPEEI----LFEKL-ELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDH 152 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i-~~~~~~e~----l~~~l-~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (232)
....+.....++.++.|..+..+ +...+.+. +++.+ +++||||+...... .....++.+.++ +
T Consensus 12 ~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~------~~~~~l~~~~~~-----g 80 (257)
T PF13407_consen 12 FWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPD------SLAPFLEKAKAA-----G 80 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTT------TTHHHHHHHHHT-----T
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHH------HHHHHHHHHhhc-----C
Confidence 34456667778888899999886 55444332 22222 36899998864431 122445666554 4
Q ss_pred ccEeehhH
Q 039121 153 FPVYAICL 160 (232)
Q Consensus 153 ~PILGICl 160 (232)
+||.-+=.
T Consensus 81 Ipvv~~d~ 88 (257)
T PF13407_consen 81 IPVVTVDS 88 (257)
T ss_dssp SEEEEESS
T ss_pred ceEEEEec
Confidence 77776533
No 219
>PRK09271 flavodoxin; Provisional
Probab=59.88 E-value=88 Score=25.12 Aligned_cols=81 Identities=11% Similarity=-0.026 Sum_probs=42.7
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCC-hHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEee
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEP-EEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~-~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILG 157 (232)
.+..++..+.+.++..|..+.+...... ..++...+..+|+|+|.--....+.+......+++........++.+=++|
T Consensus 13 nTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfg 92 (160)
T PRK09271 13 NTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFG 92 (160)
T ss_pred hHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEe
Confidence 4677888888999999987765543221 111122234678888865211112222334555555433211233456666
Q ss_pred hh
Q 039121 158 IC 159 (232)
Q Consensus 158 IC 159 (232)
.+
T Consensus 93 sg 94 (160)
T PRK09271 93 TG 94 (160)
T ss_pred cC
Confidence 64
No 220
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=59.38 E-value=25 Score=29.42 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCeEEE-EeCCCChHHH----HHhhcC-CCEEEECCCCCCCc
Q 039121 85 ASYVKFAESGGARVIP-LIFNEPEEIL----FEKLEL-VNGILYTGGWAKSG 130 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~-i~~~~~~e~l----~~~l~~-~dGlIl~GG~~~~~ 130 (232)
.-++++|+++|.++.. .-...+.+.+ .++.+. +|.|+.+||-+..+
T Consensus 30 ~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~ 81 (169)
T COG0521 30 PLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITP 81 (169)
T ss_pred hHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCC
Confidence 3566789999987721 1112233333 333344 89999999887543
No 221
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=59.27 E-value=76 Score=26.99 Aligned_cols=44 Identities=14% Similarity=-0.064 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
.-+.+.+.+.+++.|..+...... +.+. ++... .++||||+.+.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~ 63 (289)
T cd01540 15 QTEWKFAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVP 63 (289)
T ss_pred HHHHHHHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccC
Confidence 345566778888899988776443 3322 22222 36999999863
No 222
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.22 E-value=22 Score=31.65 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=41.8
Q ss_pred EEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHH
Q 039121 60 IGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKI 139 (232)
Q Consensus 60 IGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~ 139 (232)
|||..+. . ....-+...+.+++++.|..+ + .+.+|.+|.-||.+ .... .
T Consensus 3 i~Ii~~~-~---------~~~~~~~~~l~~~l~~~g~~~-----~---------~~~~Dlvi~iGGDG---T~L~----a 51 (265)
T PRK04885 3 VAIISNG-D---------PKSKRVASKLKKYLKDFGFIL-----D---------EKNPDIVISVGGDG---TLLS----A 51 (265)
T ss_pred EEEEeCC-C---------HHHHHHHHHHHHHHHHcCCcc-----C---------CcCCCEEEEECCcH---HHHH----H
Confidence 7787662 1 123346677888898888762 1 13689999999976 1211 1
Q ss_pred HHHHHHhcCCCCCccEeehhHHH
Q 039121 140 FKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 140 ~~~~l~~~~~~~~~PILGIClG~ 162 (232)
.+.+.. ...++|++||-.|.
T Consensus 52 ~~~~~~---~~~~iPilGIN~G~ 71 (265)
T PRK04885 52 FHRYEN---QLDKVRFVGVHTGH 71 (265)
T ss_pred HHHhcc---cCCCCeEEEEeCCC
Confidence 222111 11369999998874
No 223
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=59.10 E-value=47 Score=26.95 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=25.9
Q ss_pred CCCCCCCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEE
Q 039121 49 APDPSLNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVI 99 (232)
Q Consensus 49 ~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv 99 (232)
.-+.....+|||||.+...... ...-+ ..-.++|+.+|++-+
T Consensus 82 P~fa~~f~~pvIGVITK~Dl~~--------~~~~i-~~a~~~L~~aG~~~i 123 (143)
T PF10662_consen 82 PGFASMFNKPVIGVITKIDLPS--------DDANI-ERAKKWLKNAGVKEI 123 (143)
T ss_pred chhhcccCCCEEEEEECccCcc--------chhhH-HHHHHHHHHcCCCCe
Confidence 3344456799999999865321 01112 234578999998654
No 224
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=58.98 E-value=22 Score=35.27 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=38.3
Q ss_pred ccccCCCCCCCCCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC
Q 039121 43 FCAHCPAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF 103 (232)
Q Consensus 43 ~~~~~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~ 103 (232)
+.-++.-++..+..||+|||.....+...++ ....-+...+.+.++++|+.+..++.
T Consensus 24 ~l~a~G~~~ed~~~kP~IgI~ns~se~~Pch----~hl~~l~~~vk~gi~~aGg~p~ef~t 80 (571)
T PRK06131 24 FMKNQGYPDELFDGRPIIGICNTWSDLNPCN----AHFRQLAERVKRGVLEAGGFPVEFPV 80 (571)
T ss_pred HHHHcCCChHHhccCCEEEEecccccCcCch----hhHHHHHHHHHHHHHHcCCEEEecCc
Confidence 3345666777776699999999876644321 23334556677788889988876653
No 225
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=58.21 E-value=31 Score=25.69 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeeh
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAI 158 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGI 158 (232)
++.+.++. ...++++-+..+-.+......+.+|||+||...++ ++++.+.+. ++||+.+
T Consensus 33 ~~~~~~~~--~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~~-------~v~~la~~~-----~i~vi~t 91 (105)
T PF07085_consen 33 DFLEYLKP--GDLVITPGDREDIQLAAIEAGIACIILTGGLEPSE-------EVLELAKEL-----GIPVIST 91 (105)
T ss_dssp HHHHCHHT--TEEEEEETT-HHHHHHHCCTTECEEEEETT----H-------HHHHHHHHH-----T-EEEE-
T ss_pred HHHhhcCC--CeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCCH-------HHHHHHHHC-----CCEEEEE
Confidence 33444544 34555554433222333445689999999876432 345555555 3888865
No 226
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=58.11 E-value=81 Score=23.97 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=43.9
Q ss_pred cchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccCh-hHHHHHHHHHHHhcCCCCCccEe
Q 039121 78 TNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYY-DIVEKIFKKILEKNDAGDHFPVY 156 (232)
Q Consensus 78 ~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~-~~~~~~~~~~l~~~~~~~~~PIL 156 (232)
.++..++..+.+.+++.|..+.++..+... .. .+...|.|||--......... ...+.+++........++..=++
T Consensus 10 GnT~~~A~~i~~~~~~~g~~v~~~~~~~~~--~~-~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vf 86 (140)
T TIGR01753 10 GNTEEMANIIAEGLKEAGAEVDLLEVADAD--AE-DLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALF 86 (140)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEEcccCC--HH-HHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEE
Confidence 356778888888898889888877654321 11 245689888754321111111 24445555543322234445666
Q ss_pred ehh
Q 039121 157 AIC 159 (232)
Q Consensus 157 GIC 159 (232)
|.|
T Consensus 87 gt~ 89 (140)
T TIGR01753 87 GSG 89 (140)
T ss_pred ecC
Confidence 654
No 227
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=57.55 E-value=92 Score=25.69 Aligned_cols=48 Identities=15% Similarity=0.021 Sum_probs=31.2
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
....+...+.+++++.|..+++.....+.+. +.+++ .++||||+.+..
T Consensus 13 ~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~ 65 (267)
T cd01536 13 FWQAMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVD 65 (267)
T ss_pred HHHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3445667777888889998888765443322 22222 279999997643
No 228
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=57.44 E-value=36 Score=33.56 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=30.2
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF 103 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~ 103 (232)
.||+|||.+...+...++ ..-.-++..+.+.++++|+.+..++.
T Consensus 10 ~kP~IgI~ns~~e~~pch----~hl~~l~~~vk~gv~~aGg~p~ef~t 53 (535)
T TIGR00110 10 GKPFIGVANSYTTIVPGH----MHLRDLAQAVKEGIEAAGGVAFEFNT 53 (535)
T ss_pred CCCEEEEEeccccCcCch----hhHHHHHHHHHHHHHHcCCeeEEecC
Confidence 499999999887654321 22334456677788889998877653
No 229
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=57.04 E-value=77 Score=26.66 Aligned_cols=46 Identities=13% Similarity=0.003 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHh--CCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 80 ASYISASYVKFAES--GGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 80 ~~yi~~s~v~~l~~--~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..-+...+.+++++ .|..++......+.+. ++... .++||||+.+.
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~ 66 (271)
T cd06321 14 FVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAV 66 (271)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 34456677788888 6666655443333321 22212 37999999753
No 230
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.45 E-value=83 Score=26.34 Aligned_cols=45 Identities=22% Similarity=0.199 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHHH----HHhh-cCCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEIL----FEKL-ELVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l----~~~l-~~~dGlIl~GG 125 (232)
..+.....+.+++.|..+++.....+.+.. ...+ ..+||+|+.+.
T Consensus 16 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (275)
T cd06317 16 TTYNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPT 65 (275)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 345566777788899988776543333222 2222 37999999764
No 231
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=56.13 E-value=1.5e+02 Score=26.53 Aligned_cols=60 Identities=13% Similarity=-0.105 Sum_probs=35.6
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCC--CChHH----HHHhh-cCCCEEEECC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFN--EPEEI----LFEKL-ELVNGILYTG 124 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~--~~~e~----l~~~l-~~~dGlIl~G 124 (232)
...||++...... .....+...+.+.+++.|..+.+.... .+.+. ++..+ .++||||+.+
T Consensus 46 t~~Igvv~p~~~~--------~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~ 112 (343)
T PRK10936 46 AWKLCALYPHLKD--------SYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGA 112 (343)
T ss_pred CeEEEEEecCCCc--------hHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 5688988743211 133345567777888899988776432 12221 22222 3689999975
No 232
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=55.81 E-value=93 Score=25.92 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
.-+.....+++++.|..+.+.....+.+. ++.++ .++||||+.+.
T Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 15 AELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 34556777888889999887765433322 22322 37999999864
No 233
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=54.83 E-value=81 Score=26.23 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=29.2
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
...+...+.+.+++.|..++......+.+. ++.+. .++||||+.+.
T Consensus 14 ~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 14 SSLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 334556777888889988876654433322 22223 36999999874
No 234
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=54.35 E-value=1e+02 Score=25.88 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChH----HHHHhh-cCCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEE----ILFEKL-ELVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e----~l~~~l-~~~dGlIl~GG 125 (232)
..+.....+.+++.|..+.......+.+ .++.++ .++||+|+.++
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (273)
T cd01541 15 PSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPT 64 (273)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3455566778888899887765443332 122333 37999999764
No 235
>PRK03673 hypothetical protein; Provisional
Probab=53.93 E-value=78 Score=29.93 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=26.2
Q ss_pred HHHHhCCCeEEEEe-CCCChHHHHH----hhcCCCEEEECCCCC
Q 039121 89 KFAESGGARVIPLI-FNEPEEILFE----KLELVNGILYTGGWA 127 (232)
Q Consensus 89 ~~l~~~G~~vv~i~-~~~~~e~l~~----~l~~~dGlIl~GG~~ 127 (232)
+.+.+.|+.+.... ...+.+.+.+ .++++|-||++||-+
T Consensus 28 ~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG 71 (396)
T PRK03673 28 DFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG 71 (396)
T ss_pred HHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence 46899999886443 3344555443 345789999999754
No 236
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=53.85 E-value=1.3e+02 Score=26.41 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=37.8
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
....||++...... .....+...+.+++++.|..+.+.....+.+. ++.+. .++||||+.+..
T Consensus 63 ~~~~Igvv~~~~~~--------~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 130 (342)
T PRK10014 63 QSGVIGLIVRDLSA--------PFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAA 130 (342)
T ss_pred CCCEEEEEeCCCcc--------chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34689998743211 12334556677788888988776654433322 22222 368999998754
No 237
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=53.65 E-value=91 Score=25.92 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTG 124 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~G 124 (232)
..+...+.+.+++.|..++......+.+. ++..+ .++||||+.+
T Consensus 15 ~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~ 63 (268)
T cd06323 15 VTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINP 63 (268)
T ss_pred HHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 34455677788888988877654333332 22212 3699999964
No 238
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.61 E-value=1.4e+02 Score=26.07 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChH----HHHHhhc---CCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEE----ILFEKLE---LVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e----~l~~~l~---~~dGlIl~GG 125 (232)
.-+...+.+.+++.|..+++.....+.+ .++..+. ++||||+.+.
T Consensus 16 ~~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 16 NSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 3445566677888899887775443332 2333333 6999999764
No 239
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=53.60 E-value=1.1e+02 Score=26.70 Aligned_cols=41 Identities=24% Similarity=0.165 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECC
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTG 124 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~G 124 (232)
...+.+..++.|..++......+.+. ++..+ .++||||+.+
T Consensus 17 ~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~ 62 (302)
T TIGR02634 17 RDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIP 62 (302)
T ss_pred HHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44667778888998877655433322 22222 3699999975
No 240
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=53.46 E-value=1e+02 Score=26.69 Aligned_cols=45 Identities=11% Similarity=0.001 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHHhCCCeEEEE-eCCCChHH----HHHhh-cCCCEEEECC
Q 039121 80 ASYISASYVKFAESGGARVIPL-IFNEPEEI----LFEKL-ELVNGILYTG 124 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i-~~~~~~e~----l~~~l-~~~dGlIl~G 124 (232)
...+.....+..++.|..+..+ +.+.+.+. ++..+ .++||||+.+
T Consensus 14 ~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~ 64 (298)
T cd06302 14 FNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVP 64 (298)
T ss_pred HHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 4455667777888899988765 33333322 22222 3699999975
No 241
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=53.41 E-value=43 Score=28.49 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCeE-EEEeCCCChHHHHHhhcCCCEEEECC
Q 039121 85 ASYVKFAESGGARV-IPLIFNEPEEILFEKLELVNGILYTG 124 (232)
Q Consensus 85 ~s~v~~l~~~G~~v-v~i~~~~~~e~l~~~l~~~dGlIl~G 124 (232)
....+.+++.|.++ +.+....+.+.++.+++.+|.|++..
T Consensus 95 ~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMs 135 (201)
T PF00834_consen 95 KETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMS 135 (201)
T ss_dssp HHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEE
Confidence 35678899999987 55555666778888899999998854
No 242
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=52.00 E-value=1.3e+02 Score=24.95 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCCh---HHHHHhh--cCCCEEEECCCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPE---EILFEKL--ELVNGILYTGGW 126 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~---e~l~~~l--~~~dGlIl~GG~ 126 (232)
.-+...+.+.+++.|..+......... +.+.+.+ .++||+|+.+..
T Consensus 19 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 69 (268)
T cd06271 19 AEFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTR 69 (268)
T ss_pred HHHHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 344567777888899888776544322 2233433 359999998753
No 243
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=51.89 E-value=58 Score=35.59 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=29.5
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFN 104 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~ 104 (232)
+|+|||+....... .....+++ .+++.||+.|+.|+++...
T Consensus 253 ~p~Vgil~~r~~~~------~~d~~~~d-alI~~LE~~G~~vipvf~~ 293 (1310)
T PRK12493 253 APTVGLLLQRTHLL------TGNDAHYV-ALIQELEARGARVIPAYAG 293 (1310)
T ss_pred CCEEEEEEchhhhh------cCCcHHHH-HHHHHHHHCCCeEEEEEec
Confidence 79999998754321 12344554 7889999999999987643
No 244
>PRK05569 flavodoxin; Provisional
Probab=51.83 E-value=1.1e+02 Score=23.60 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=30.9
Q ss_pred cchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECC
Q 039121 78 TNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTG 124 (232)
Q Consensus 78 ~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~G 124 (232)
.++..++..+.+-+++.|+.+.+....... .. .+..+|+|+|--
T Consensus 13 GnT~~iA~~i~~~~~~~g~~v~~~~~~~~~--~~-~~~~~d~iilgs 56 (141)
T PRK05569 13 GNVEVLANTIADGAKEAGAEVTIKHVADAK--VE-DVLEADAVAFGS 56 (141)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEECCcCC--HH-HHhhCCEEEEEC
Confidence 357788888888898899888776654321 11 256789988853
No 245
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=51.09 E-value=1.3e+02 Score=25.30 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCC--CChH----HHHHhh-cCCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFN--EPEE----ILFEKL-ELVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~--~~~e----~l~~~l-~~~dGlIl~GG 125 (232)
..+...+.+++++.|..+.+...+ .+.+ .++.++ .++||+|+.+.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (275)
T cd06320 15 RSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPI 66 (275)
T ss_pred HHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 344456677888889988776432 1221 122223 36999998754
No 246
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=50.54 E-value=61 Score=32.70 Aligned_cols=88 Identities=20% Similarity=0.161 Sum_probs=48.1
Q ss_pred ccccccCCCCCCCCCCCCEEEEeCCCCCCC-CCC--cCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHHH----
Q 039121 41 TTFCAHCPAPDPSLNYRPVIGILSHPGDGA-SGR--LSNATNASYISASYVKFAESGGARVIPLIF-NEPEEILFE---- 112 (232)
Q Consensus 41 ~~~~~~~~~~~~~~~~~PvIGI~~~~~~~~-~~~--~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~~---- 112 (232)
+.+-.++....-....||.|+|++.-.+-. .|. +..++-.+.....+..++++.|++++.+.. ..+.+.+.+
T Consensus 165 i~lLas~Gi~~V~V~~kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~ 244 (659)
T PLN02699 165 IGLLATVGVTMVKVYPRPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDE 244 (659)
T ss_pred HHHHHHCCCCeEEeecCCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHH
Confidence 334444555555566799999986422110 010 111121222222345578999998875543 334444443
Q ss_pred hhc-CCCEEEECCCCCC
Q 039121 113 KLE-LVNGILYTGGWAK 128 (232)
Q Consensus 113 ~l~-~~dGlIl~GG~~~ 128 (232)
.++ .+|-||.+||...
T Consensus 245 a~~~~~DlvItTGGts~ 261 (659)
T PLN02699 245 AISSGVDILLTSGGVSM 261 (659)
T ss_pred hhcCCCCEEEECCCCCC
Confidence 333 5899999999874
No 247
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.35 E-value=1.4e+02 Score=25.19 Aligned_cols=45 Identities=9% Similarity=-0.105 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHhC-----CCeEEEEeCCCChHH----HHHhhc-CCCEEEECCC
Q 039121 81 SYISASYVKFAESG-----GARVIPLIFNEPEEI----LFEKLE-LVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~-----G~~vv~i~~~~~~e~----l~~~l~-~~dGlIl~GG 125 (232)
.-+.....+..++. |..+.......+.+. ++.+.. ++||||+.+.
T Consensus 15 ~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~ 69 (274)
T cd06311 15 AGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPF 69 (274)
T ss_pred HHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 33455666667665 566666554333322 222333 6999999864
No 248
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.35 E-value=1.3e+02 Score=25.73 Aligned_cols=45 Identities=7% Similarity=-0.121 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEe-CCCChH----HHHHhh-cCCCEEEECC
Q 039121 80 ASYISASYVKFAESGGARVIPLI-FNEPEE----ILFEKL-ELVNGILYTG 124 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~-~~~~~e----~l~~~l-~~~dGlIl~G 124 (232)
...+...+.+.+++.|..++.+. ...+.+ .+...+ .++||||+.+
T Consensus 14 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~ 64 (294)
T cd06316 14 SNAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIP 64 (294)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 34566777888999999887543 222222 122222 3689999975
No 249
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=50.23 E-value=1.7e+02 Score=25.70 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=35.1
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC--hHH-HHHhh-cCCCEEEECCCCC
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP--EEI-LFEKL-ELVNGILYTGGWA 127 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~--~e~-l~~~l-~~~dGlIl~GG~~ 127 (232)
.++|..+|..+.. ..... .+.+.+.+++.|..+.+...... .++ +.+.. +.+|.||+.||.+
T Consensus 3 ~~~ii~Np~sg~~------~~~~~-~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDG 68 (293)
T TIGR00147 3 EAPAILNPTAGKS------NDNKP-LREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDG 68 (293)
T ss_pred eEEEEECCCccch------hhHHH-HHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCC
Confidence 5677777753320 11222 34567788999988766554322 111 22222 3578999999876
No 250
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.05 E-value=73 Score=26.73 Aligned_cols=44 Identities=25% Similarity=0.159 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCCChHHH----HHhh-cCCCEEEECCC
Q 039121 82 YISASYVKFAESGGARVIPLIFNEPEEIL----FEKL-ELVNGILYTGG 125 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~~~e~l----~~~l-~~~dGlIl~GG 125 (232)
-+...+.+.+++.|..++......+.+.. +... .++||||+.+-
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 16 AVSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 34566777888899998877654443321 2222 26999999874
No 251
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.82 E-value=78 Score=26.41 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhhc-CCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEI----LFEKLE-LVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l~-~~dGlIl~GG 125 (232)
.-+...+.+.+++.|..+.......+.+. ++.+.. .+||||+.+.
T Consensus 16 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 65 (269)
T cd06288 16 VEIILGAQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYATM 65 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 34455677788889998877765444322 222222 6899999873
No 252
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=49.60 E-value=49 Score=33.15 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=33.4
Q ss_pred cCCCCCCCCCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEe
Q 039121 46 HCPAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLI 102 (232)
Q Consensus 46 ~~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~ 102 (232)
.+.-++..+ .||+|||.....+...++ ..-.-++..+.+.++++|+.+..++
T Consensus 23 a~G~~ded~-~kP~IgI~ns~~e~~pch----~hl~~la~~vk~gi~~aGG~p~ef~ 74 (615)
T PRK12448 23 ATGMKDEDF-GKPIIAVVNSFTQFVPGH----VHLKDLGQLVAREIEAAGGVAKEFN 74 (615)
T ss_pred HcCCChHHh-CCCEEEEEeccccCcCch----hhHHHHHHHHHHHHHHcCCeeeEec
Confidence 344555555 499999999876544321 2223345666677888998777664
No 253
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=49.50 E-value=88 Score=26.94 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCeE-EEEeCCCChHHHHHhhcCCCEEEECC
Q 039121 85 ASYVKFAESGGARV-IPLIFNEPEEILFEKLELVNGILYTG 124 (232)
Q Consensus 85 ~s~v~~l~~~G~~v-v~i~~~~~~e~l~~~l~~~dGlIl~G 124 (232)
....+++++.|.++ +.+....+.+.+..+++.+|.|++.+
T Consensus 96 ~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMt 136 (220)
T PRK08883 96 DRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMS 136 (220)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEE
Confidence 46778899999887 44455566788888999999999954
No 254
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.48 E-value=1.5e+02 Score=25.00 Aligned_cols=46 Identities=13% Similarity=-0.076 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHH----HHhh-cCCCEEEECCC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNE-PEEIL----FEKL-ELVNGILYTGG 125 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l----~~~l-~~~dGlIl~GG 125 (232)
..-+...+.+++++.|..+.+...+. +.+.. +.++ .++||+|+.+.
T Consensus 15 ~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (271)
T cd06312 15 WTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIP 66 (271)
T ss_pred HHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 33455667778888899887775543 33222 1211 36999999864
No 255
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=49.47 E-value=82 Score=26.25 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=37.7
Q ss_pred chhhhHHHHHHHHHh-CCCeEEEEeCCCC-hHHH----------------HHhhcCCCEEEECCCCCCCccChhHHHHHH
Q 039121 79 NASYISASYVKFAES-GGARVIPLIFNEP-EEIL----------------FEKLELVNGILYTGGWAKSGLYYDIVEKIF 140 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~-~G~~vv~i~~~~~-~e~l----------------~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~ 140 (232)
.+..+++.+.+.+++ .|+++.++..... +.++ .+.+..+|+|||--..- ........+.++
T Consensus 14 ~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty-~g~~~~~lk~fl 92 (200)
T PRK03767 14 HIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTR-FGNMAGQMRNFL 92 (200)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEeccc-CCCchHHHHHHH
Confidence 466788888888988 8998877765321 1111 24467899988753221 222233445555
Q ss_pred HHH
Q 039121 141 KKI 143 (232)
Q Consensus 141 ~~~ 143 (232)
+..
T Consensus 93 d~~ 95 (200)
T PRK03767 93 DQT 95 (200)
T ss_pred HHh
Confidence 543
No 256
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=49.28 E-value=1.3e+02 Score=25.38 Aligned_cols=44 Identities=7% Similarity=-0.030 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhC-CCeEEEEeCCCChH----HHHHhh-cCCCEEEECCC
Q 039121 82 YISASYVKFAESG-GARVIPLIFNEPEE----ILFEKL-ELVNGILYTGG 125 (232)
Q Consensus 82 yi~~s~v~~l~~~-G~~vv~i~~~~~~e----~l~~~l-~~~dGlIl~GG 125 (232)
-+.....+.+++. |..+.+.....+.+ .++..+ .++||||+.+.
T Consensus 16 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 65 (270)
T cd06308 16 AMNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPN 65 (270)
T ss_pred HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecC
Confidence 3455666777775 88887665433332 122222 37899999864
No 257
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=49.03 E-value=35 Score=30.60 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=57.6
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEE---EEeCC--CChHHHHHhhcCCCEEEECCCCCC--C
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVI---PLIFN--EPEEILFEKLELVNGILYTGGWAK--S 129 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv---~i~~~--~~~e~l~~~l~~~dGlIl~GG~~~--~ 129 (232)
+..|.|.+..+..+ --|-.+|.+..+..|+.-+ .+... .+.+++.+.+++++||+|+||... -
T Consensus 52 ~A~i~I~paas~ep----------~~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~ri~ 121 (293)
T COG4242 52 KAYIVIIPAASREP----------RAIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQLRII 121 (293)
T ss_pred ceEEEEEecCccCh----------hhhccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcceeee
Confidence 44778877654422 2344566777888887443 22322 234455667889999999999861 1
Q ss_pred ccChhH-HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 130 GLYYDI-VEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 130 ~~~~~~-~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
..+.++ ..+.+.... .++.-|=|+--|.-+|...
T Consensus 122 ~~lkdTpl~~~ir~r~-----r~G~avgGTSAGAavM~~~ 156 (293)
T COG4242 122 GSLKDTPLMAAIRQRV-----RRGIAVGGTSAGAAVMSDH 156 (293)
T ss_pred eeccCCHHHHHHHHHH-----hcCceecccccchhhcCCc
Confidence 111111 222333333 3358899999999888764
No 258
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=48.82 E-value=80 Score=26.25 Aligned_cols=45 Identities=20% Similarity=0.022 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHHH----HHhh-cCCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEIL----FEKL-ELVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l----~~~l-~~~dGlIl~GG 125 (232)
.-+...+.+++++.|..++.+....+.+.. +.+. .++||+|+.+.
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06284 15 SEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDG 64 (267)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 344567778889999988777654443221 2222 26999999654
No 259
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.79 E-value=47 Score=29.61 Aligned_cols=70 Identities=16% Similarity=0.048 Sum_probs=44.1
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHH
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEK 138 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~ 138 (232)
.|||..++.. ...-+...+.+|+++.|..++.- .+.+|.+|.-||.+ .....
T Consensus 4 ~i~iv~~~~~----------~a~~~~~~l~~~l~~~g~~~~~~------------~~~~D~vi~lGGDG---T~L~a--- 55 (264)
T PRK03501 4 NLFFFYKRDK----------ELVEKVKPLKKIAEEYGFTVVDH------------PKNANIIVSIGGDG---TFLQA--- 55 (264)
T ss_pred EEEEEECCCH----------HHHHHHHHHHHHHHHCCCEEEcC------------CCCccEEEEECCcH---HHHHH---
Confidence 6888877543 23345667888999999876531 13579999999976 11111
Q ss_pred HHHHHHHhcCCCCCccEeehhH-H
Q 039121 139 IFKKILEKNDAGDHFPVYAICL-G 161 (232)
Q Consensus 139 ~~~~~l~~~~~~~~~PILGICl-G 161 (232)
.+.+.. .+..|++||-. |
T Consensus 56 -~~~~~~----~~~~pilgIn~~G 74 (264)
T PRK03501 56 -VRKTGF----REDCLYAGISTKD 74 (264)
T ss_pred -HHHhcc----cCCCeEEeEecCC
Confidence 222111 12589999988 6
No 260
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.68 E-value=1.5e+02 Score=24.63 Aligned_cols=45 Identities=24% Similarity=0.182 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..+.....++.++.|..+.......+.+. ++... .++||+|+.+.
T Consensus 15 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 15 AELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 33445666778888988776543333321 22222 36899999864
No 261
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=48.60 E-value=60 Score=28.47 Aligned_cols=59 Identities=19% Similarity=0.121 Sum_probs=37.3
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHH---HHhh-cCCCEEEECC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEIL---FEKL-ELVNGILYTG 124 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l---~~~l-~~~dGlIl~G 124 (232)
.+|||.-..... ....-+...+.+.+++.|..++++....+.+.. +.++ .++||+|+.+
T Consensus 2 ~~IGvivp~~~n--------pff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s 64 (279)
T PF00532_consen 2 KTIGVIVPDISN--------PFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILAS 64 (279)
T ss_dssp CEEEEEESSSTS--------HHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEES
T ss_pred CEEEEEECCCCC--------cHHHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEec
Confidence 468887665432 123445567777888899999887755443321 1122 3799999995
No 262
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=48.15 E-value=1.2e+02 Score=26.41 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=45.5
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhH
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDI 135 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~ 135 (232)
.+|+||+++..+..............+ ..+.+.|++. ..+..+... .+.+ -+.+|.||+.|-.. .+...
T Consensus 145 ~~~~V~~l~ghge~~~~~~~~~~~~~~--~~l~~~L~~~-y~V~~~~l~--~~~I---P~~~d~Lvi~~P~~---~ls~~ 213 (271)
T PF09822_consen 145 EKPKVYFLTGHGERGGGSMPNSQSTSY--SSLKSLLEKN-YDVEELNLA--NEEI---PDDADVLVIAGPKT---DLSEE 213 (271)
T ss_pred cCceEEEEccccccccccccccCcchH--HHHHHHHHhc-CceeecCCc--cccc---CCCCCEEEEECCCC---CCCHH
Confidence 479999999876541111111122222 4566788888 888877543 2222 36799999987554 13334
Q ss_pred HHHHHHHHHH
Q 039121 136 VEKIFKKILE 145 (232)
Q Consensus 136 ~~~~~~~~l~ 145 (232)
+...++..++
T Consensus 214 e~~~l~~yl~ 223 (271)
T PF09822_consen 214 ELYALDQYLM 223 (271)
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 263
>PRK06851 hypothetical protein; Provisional
Probab=48.15 E-value=60 Score=30.40 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=40.7
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECC-C
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTG-G 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~G-G 125 (232)
+.++.|+..|+. +++.+...+.+.+.+.|..+...+...++ +++|+||||. +
T Consensus 214 ~~~~~i~G~pG~----------GKstl~~~i~~~a~~~G~~v~~~hC~~dP-------dslD~viIPel~ 266 (367)
T PRK06851 214 KNRYFLKGRPGT----------GKSTMLKKIAKAAEERGFDVEVYHCGFDP-------DSLDMVIIPELN 266 (367)
T ss_pred ceEEEEeCCCCC----------cHHHHHHHHHHHHHhCCCeEEEEeCCCCC-------CCcceEEeccCC
Confidence 567888888875 45667778888888999999998876654 3689999988 5
No 264
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.01 E-value=1.7e+02 Score=24.57 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChH----HHHHhh-cCCCEEEECCC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEE----ILFEKL-ELVNGILYTGG 125 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e----~l~~~l-~~~dGlIl~GG 125 (232)
...+.....+.+++.|..++.+....+.+ .+...+ .++||+|+.+.
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 14 WQIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred HHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 33455667777888899887765433322 122222 47999998753
No 265
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=47.96 E-value=91 Score=30.21 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=30.5
Q ss_pred HHHHHHHhCCCeEEE-EeCCCChHHHHHhhc-CCCEEEECCCCC
Q 039121 86 SYVKFAESGGARVIP-LIFNEPEEILFEKLE-LVNGILYTGGWA 127 (232)
Q Consensus 86 s~v~~l~~~G~~vv~-i~~~~~~e~l~~~l~-~~dGlIl~GG~~ 127 (232)
+-.++-..+|+++.- +.++.+..+++++.+ ++|-|+|.||-+
T Consensus 88 AAk~AAlgAGA~V~~~~a~~l~~~~l~~I~~~~PDIILLaGGtD 131 (463)
T TIGR01319 88 AAKRAAHGAGAKIANVYAYDLNNKDIEAIEESNLDIILFAGGTD 131 (463)
T ss_pred HHHHHHhcCCcEEEEEEeecCCHHHHHHHhhcCCCEEEEeCCcC
Confidence 334456678998865 556667777766554 689999999987
No 266
>PRK00549 competence damage-inducible protein A; Provisional
Probab=47.60 E-value=1.6e+02 Score=27.89 Aligned_cols=41 Identities=22% Similarity=0.149 Sum_probs=26.5
Q ss_pred HHHHHHhCCCeEEEEeC-CCChHHHH----HhhcCCCEEEECCCCC
Q 039121 87 YVKFAESGGARVIPLIF-NEPEEILF----EKLELVNGILYTGGWA 127 (232)
Q Consensus 87 ~v~~l~~~G~~vv~i~~-~~~~e~l~----~~l~~~dGlIl~GG~~ 127 (232)
+.+.+++.|+.+..+.. ..+.+.+. +..+.+|-||++||-.
T Consensus 25 L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlG 70 (414)
T PRK00549 25 LSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLG 70 (414)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCC
Confidence 33469999998765432 23344333 3345789999999865
No 267
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.48 E-value=1.3e+02 Score=25.08 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhhc-CCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEI----LFEKLE-LVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l~-~~dGlIl~GG 125 (232)
..+.....+.+++.|..+++...+.+.+. ++.... ++||||+.+.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 15 SEVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 34455667788889998887765443321 222223 5999998754
No 268
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.45 E-value=1.4e+02 Score=25.54 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhh-cCCCEEEECCCC
Q 039121 82 YISASYVKFAESGGARVIPLIFNEPEEILFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l-~~~dGlIl~GG~ 126 (232)
.+-..+.+.+++.|..+.+.......+.+.... .++||+|+.+-.
T Consensus 21 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~ 66 (283)
T cd06279 21 QFLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGVP 66 (283)
T ss_pred HHHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 344566778888999988876433222232222 379999998653
No 269
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=47.37 E-value=57 Score=26.91 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=41.3
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeeh
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAI 158 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGI 158 (232)
.+..++..+.+.++. |..+.+++...... ..+..+|.|||-++-. .+.+....++.++..... -+++|+.-.
T Consensus 13 ~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~---~~l~~yD~vIlGspi~-~G~~~~~~~~fl~~~~~~---l~~K~v~~F 84 (177)
T PRK11104 13 QTRKIASYIASELKE-GIQCDVVNLHRIEE---PDLSDYDRVVIGASIR-YGHFHSALYKFVKKHATQ---LNQMPSAFF 84 (177)
T ss_pred hHHHHHHHHHHHhCC-CCeEEEEEhhhcCc---cCHHHCCEEEEECccc-cCCcCHHHHHHHHHHHHH---hCCCeEEEE
Confidence 466777777777876 87777766543211 1256789977755432 222334444555443221 124666666
Q ss_pred hHH
Q 039121 159 CLG 161 (232)
Q Consensus 159 ClG 161 (232)
|.|
T Consensus 85 ~v~ 87 (177)
T PRK11104 85 SVN 87 (177)
T ss_pred Eec
Confidence 655
No 270
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=46.94 E-value=2e+02 Score=25.10 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=36.0
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
...||++...... ....-+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+..
T Consensus 61 ~~~Igvv~~~~~~--------~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 127 (328)
T PRK11303 61 TRSIGLIIPDLEN--------TSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSL 127 (328)
T ss_pred CceEEEEeCCCCC--------chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 4689998642111 12233455667778889998877654333221 12222 369999997643
No 271
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=46.83 E-value=1.3e+02 Score=27.57 Aligned_cols=46 Identities=20% Similarity=0.080 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCeEEEEeCC-CChHHHHHhh-----cCCCEEEECCCCCCCc
Q 039121 85 ASYVKFAESGGARVIPLIFN-EPEEILFEKL-----ELVNGILYTGGWAKSG 130 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~-~~~e~l~~~l-----~~~dGlIl~GG~~~~~ 130 (232)
..+..++++.|+.++..... .+.+.+.+.+ +.+|-||.+||....+
T Consensus 178 ~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~ 229 (312)
T PRK03604 178 KLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGP 229 (312)
T ss_pred HHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCC
Confidence 34556799999988765432 3344443322 3589999999987543
No 272
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=46.76 E-value=1.5e+02 Score=25.08 Aligned_cols=46 Identities=9% Similarity=-0.089 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChH---HHHHhh--cCCCEEEECCCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEE---ILFEKL--ELVNGILYTGGW 126 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e---~l~~~l--~~~dGlIl~GG~ 126 (232)
.-+...+.+.+++.|..+++.....+.+ .+...+ .++||||+.+..
T Consensus 15 ~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~ 65 (269)
T cd06297 15 RRLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYD 65 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 3445677788888999988876543221 122222 269999998743
No 273
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=46.43 E-value=1.1e+02 Score=24.79 Aligned_cols=87 Identities=11% Similarity=0.158 Sum_probs=46.2
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC-C-------------hHHHHHhhcCCCEEEECC
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE-P-------------EEILFEKLELVNGILYTG 124 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~-~-------------~e~l~~~l~~~dGlIl~G 124 (232)
+++|.+.+..+ ..+.-+.+.+++.+++.|.++..+.... + .+.+.+.+..+|+|||.-
T Consensus 2 il~I~gS~r~~--------S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~s 73 (171)
T TIGR03567 2 VLTLSGSPSTP--------SRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVAT 73 (171)
T ss_pred EEEEECCCCCC--------ChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEEC
Confidence 56777777532 2345566777778888887776654311 0 123345566789999862
Q ss_pred CCCCCccChhHHHHHHHHHHHhcCCCCCccEe
Q 039121 125 GWAKSGLYYDIVEKIFKKILEKNDAGDHFPVY 156 (232)
Q Consensus 125 G~~~~~~~~~~~~~~~~~~l~~~~~~~~~PIL 156 (232)
|.....+....+.++++.-... =+++|+.
T Consensus 74 -P~Y~~sip~~LK~~iD~~~~~~--l~~K~v~ 102 (171)
T TIGR03567 74 -PVYKASYSGVLKALLDLLPQRA--LRGKVVL 102 (171)
T ss_pred -CcccCCCCHHHHHHHHhCChhh--hCCCEEE
Confidence 2111122234555555442111 1246775
No 274
>PRK09739 hypothetical protein; Provisional
Probab=45.48 E-value=1.5e+02 Score=24.62 Aligned_cols=75 Identities=12% Similarity=0.255 Sum_probs=45.3
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC----------------------C--hHHHHH
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE----------------------P--EEILFE 112 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~----------------------~--~e~l~~ 112 (232)
+.++-|.++|... ....-+.+.+++.+++.|.++..+.... + -+.+.+
T Consensus 4 mkiliI~~sp~~~--------s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (199)
T PRK09739 4 MRIYLVWAHPRHD--------SLTAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYS 75 (199)
T ss_pred ceEEEEEcCCCCC--------CcHHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHH
Confidence 4577777887542 2355677888888988888776664211 0 123345
Q ss_pred hhcCCCEEEECCCCCCCccCh----hHHHHHHHHHH
Q 039121 113 KLELVNGILYTGGWAKSGLYY----DIVEKIFKKIL 144 (232)
Q Consensus 113 ~l~~~dGlIl~GG~~~~~~~~----~~~~~~~~~~l 144 (232)
.+..+|+|||. .|.|. ..++.+++.+.
T Consensus 76 ~l~~AD~iV~~-----~P~y~~~~Pa~LK~~iD~v~ 106 (199)
T PRK09739 76 ELLEHDALVFV-----FPLWWYSFPAMLKGYIDRVW 106 (199)
T ss_pred HHHhCCEEEEE-----CchhhhcchHHHHHHHHHHc
Confidence 56788999885 23222 34556666654
No 275
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=45.04 E-value=86 Score=27.37 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCeE-EEEeCCCChHHHHHhhcCCCEEEECC
Q 039121 85 ASYVKFAESGGARV-IPLIFNEPEEILFEKLELVNGILYTG 124 (232)
Q Consensus 85 ~s~v~~l~~~G~~v-v~i~~~~~~e~l~~~l~~~dGlIl~G 124 (232)
...++.+++.|.++ +.+....+.+.+..+++.+|.|++..
T Consensus 98 ~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMs 138 (229)
T PRK09722 98 FRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMT 138 (229)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEE
Confidence 45678899999887 45555667788888999999998843
No 276
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=44.81 E-value=99 Score=27.98 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHH----HHhh-cCCCEEEECC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEIL----FEKL-ELVNGILYTG 124 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l----~~~l-~~~dGlIl~G 124 (232)
..-+||+......+ ....-+...+.+.+++.|..+.+...+.+.+.. +.+. .++||||+.|
T Consensus 57 ~s~~Ig~i~p~~~~--------~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 57 RTKTIGLVVPDITN--------PFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CCCEEEEEeCCCCC--------chHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 34689998773221 233445567778888899999888766544332 2222 3799999999
No 277
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=44.21 E-value=1e+02 Score=25.71 Aligned_cols=45 Identities=16% Similarity=0.055 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 82 YISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
-+...+.+.+++.|..+++...+.+.+. ++.+. .++||||+.+..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (269)
T cd06275 16 EVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSE 65 (269)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3455677778888998877654433332 22322 369999998743
No 278
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.12 E-value=59 Score=23.90 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCeEEEE--eCCCC--hHHHHHhhcCCCEEEECCCCC
Q 039121 85 ASYVKFAESGGARVIPL--IFNEP--EEILFEKLELVNGILYTGGWA 127 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i--~~~~~--~e~l~~~l~~~dGlIl~GG~~ 127 (232)
..|.+.+++.|+..+.. .-... ...+++.+.++|.||+.=+..
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~v 59 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYV 59 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCc
Confidence 57788899999988887 21112 234778888999999875443
No 279
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=44.04 E-value=1.1e+02 Score=26.61 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCeE-EEEeCCCChHHHHHhhcCCCEEEEC
Q 039121 85 ASYVKFAESGGARV-IPLIFNEPEEILFEKLELVNGILYT 123 (232)
Q Consensus 85 ~s~v~~l~~~G~~v-v~i~~~~~~e~l~~~l~~~dGlIl~ 123 (232)
....+.+++.|.++ +.+....+.+.+..+++.+|.|++.
T Consensus 100 ~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvM 139 (223)
T PRK08745 100 HRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVM 139 (223)
T ss_pred HHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEE
Confidence 46778899999887 4555566778888899999999984
No 280
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=43.82 E-value=2e+02 Score=24.30 Aligned_cols=45 Identities=16% Similarity=-0.059 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCC--ChH----HHHHhh-cCCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNE--PEE----ILFEKL-ELVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~--~~e----~l~~~l-~~~dGlIl~GG 125 (232)
.-+...+.+.+++.|..++....+. +.+ .++..+ .++||||+.+.
T Consensus 15 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~ 66 (268)
T cd06306 15 LSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAV 66 (268)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3455667778888999988775432 221 222222 37999999853
No 281
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=43.80 E-value=2.2e+02 Score=24.91 Aligned_cols=62 Identities=19% Similarity=0.083 Sum_probs=37.5
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
..+||++...... .....+...+.+.+++.|..+.......+.+. ++.+. .++||||+.++.
T Consensus 59 ~~~i~vi~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 125 (341)
T PRK10703 59 TKSIGLLATSSEA--------PYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSE 125 (341)
T ss_pred CCeEEEEeCCCCC--------chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3589988643211 23344556777788889998877654333322 22222 268999998753
No 282
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=43.25 E-value=69 Score=29.59 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=31.5
Q ss_pred cCCCEEEECCCCCCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 115 ELVNGILYTGGWAKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 115 ~~~dGlIl~GG~~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
..+|-|++.||..... .-......+++.+.. ++..+-|||-|.=+|+.+
T Consensus 75 ~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~-----~G~~l~gictGaf~LA~a 124 (328)
T COG4977 75 PPIDILPVCGGLGPERPVNAPALLAWLRRAAR-----RGARLGGLCTGAFVLAEA 124 (328)
T ss_pred CcceEEEEecCCCcccccchHHHHHHHHHHHh-----cCCeEEEehHhHHHHHHh
Confidence 3478888867654221 111224444554443 469999999999999986
No 283
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=42.93 E-value=1.4e+02 Score=27.78 Aligned_cols=79 Identities=6% Similarity=-0.025 Sum_probs=45.5
Q ss_pred chhhhHHHHHHHHH--hCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccE
Q 039121 79 NASYISASYVKFAE--SGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPV 155 (232)
Q Consensus 79 ~~~yi~~s~v~~l~--~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PI 155 (232)
++.-++..+.+-++ ..|+.+.+..... +.+++.+.+..+|+|+|-- |...........++++.....+..++..=+
T Consensus 260 nTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~Gs-pT~~~~~~~~~~~~l~~l~~~~~~~K~~a~ 338 (394)
T PRK11921 260 STRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILVGS-STINRGILSSTAAILEEIKGLGFKNKKAAA 338 (394)
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEC-CCcCccccHHHHHHHHHhhccCcCCCEEEE
Confidence 56678888888888 6788887776543 4455554456799999853 221111123345555554433333344445
Q ss_pred eeh
Q 039121 156 YAI 158 (232)
Q Consensus 156 LGI 158 (232)
+|-
T Consensus 339 FGs 341 (394)
T PRK11921 339 FGS 341 (394)
T ss_pred Eec
Confidence 664
No 284
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.90 E-value=66 Score=28.76 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=41.9
Q ss_pred EEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHH------HhhcCCCEEEECCCCCCCccCh
Q 039121 60 IGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILF------EKLELVNGILYTGGWAKSGLYY 133 (232)
Q Consensus 60 IGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~------~~l~~~dGlIl~GG~~~~~~~~ 133 (232)
|||..++... ...-+...+.+|+ +.|..++.-.... +.+. ... .+|.+|.-||.+ ..
T Consensus 3 i~iv~~~~~~---------~~~~~~~~i~~~l-~~g~~~~~~~~~~--~~~~~~~~~~~~~-~~D~vi~lGGDG---T~- 65 (271)
T PRK01185 3 VAFVIRKDCK---------RCIKIAKSIIELL-PPDWEIIYEMEAA--KALGMDGLDIEEI-NADVIITIGGDG---TI- 65 (271)
T ss_pred EEEEecCCCH---------HHHHHHHHHHHHH-hcCCEEEEechhh--hhcCcccCccccc-CCCEEEEEcCcH---HH-
Confidence 8888876531 2233456777788 4687765532110 1100 111 589999999986 11
Q ss_pred hHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 134 DIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 134 ~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
++.+... ..|||||-.|
T Consensus 66 ------L~a~~~~-----~~PilGIN~G 82 (271)
T PRK01185 66 ------LRTLQRA-----KGPILGINMG 82 (271)
T ss_pred ------HHHHHHc-----CCCEEEEECC
Confidence 2222222 2599999888
No 285
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.56 E-value=1.3e+02 Score=25.82 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=30.2
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCC
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGG 125 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG 125 (232)
...-+...+.+.+++.|..+++.......+.+. -.++||+|+.+.
T Consensus 21 ~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~l~--~~~vdgiIi~~~ 65 (269)
T cd06287 21 FMMEVAAAAAESALERGLALCLVPPHEADSPLD--ALDIDGAILVEP 65 (269)
T ss_pred cHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhh--ccCcCeEEEecC
Confidence 344556677788899999998876543323332 237999999763
No 286
>PRK03670 competence damage-inducible protein A; Provisional
Probab=42.53 E-value=1.2e+02 Score=26.78 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=25.8
Q ss_pred HHHHHHhCCCeEEEEeCC-CChHHHHHh----hc-CCCEEEECCCCC
Q 039121 87 YVKFAESGGARVIPLIFN-EPEEILFEK----LE-LVNGILYTGGWA 127 (232)
Q Consensus 87 ~v~~l~~~G~~vv~i~~~-~~~e~l~~~----l~-~~dGlIl~GG~~ 127 (232)
+.+.+++.|+.+..+... .+.+.+.+. ++ .+|-||++||-+
T Consensus 25 la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG 71 (252)
T PRK03670 25 IAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG 71 (252)
T ss_pred HHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence 344699999988654432 334444332 34 369999999855
No 287
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=42.46 E-value=99 Score=29.37 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=26.4
Q ss_pred HHHHHhCCCeEEEEeC-CCChHH----HHHhhcCCCEEEECCCCC
Q 039121 88 VKFAESGGARVIPLIF-NEPEEI----LFEKLELVNGILYTGGWA 127 (232)
Q Consensus 88 v~~l~~~G~~vv~i~~-~~~~e~----l~~~l~~~dGlIl~GG~~ 127 (232)
.+.+++.|+.+..... ..+.+. +.+.++++|-||++||-.
T Consensus 26 ~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 26 ADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred HHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 3468999998764432 233333 334456789999999865
No 288
>PRK07308 flavodoxin; Validated
Probab=42.31 E-value=1.6e+02 Score=22.90 Aligned_cols=76 Identities=12% Similarity=0.071 Sum_probs=43.9
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC-CccChhHHHHHHHHHHHhcCCCCCccEee
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK-SGLYYDIVEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~-~~~~~~~~~~~~~~~l~~~~~~~~~PILG 157 (232)
.+.-++..+.+.+++.|..+.+....... .. .+...|.|+| |-+.. .........++++.....+..++..=++|
T Consensus 14 nTe~iA~~ia~~l~~~g~~~~~~~~~~~~--~~-~l~~~d~vi~-g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~~~vfG 89 (146)
T PRK07308 14 NTEEIADIVADKLRELGHDVDVDECTTVD--AS-DFEDADIAIV-ATYTYGDGELPDEIVDFYEDLADLDLSGKIYGVVG 89 (146)
T ss_pred hHHHHHHHHHHHHHhCCCceEEEecccCC--Hh-HhccCCEEEE-EeCccCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 45667888888888888877666543221 11 2567899998 54432 12333345566666433322344556666
Q ss_pred h
Q 039121 158 I 158 (232)
Q Consensus 158 I 158 (232)
.
T Consensus 90 ~ 90 (146)
T PRK07308 90 S 90 (146)
T ss_pred e
Confidence 6
No 289
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=42.10 E-value=99 Score=26.99 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCeE-EEEeCCCChHHHHHhhcCCCEEEEC
Q 039121 85 ASYVKFAESGGARV-IPLIFNEPEEILFEKLELVNGILYT 123 (232)
Q Consensus 85 ~s~v~~l~~~G~~v-v~i~~~~~~e~l~~~l~~~dGlIl~ 123 (232)
+..++.+++.|+++ +.+.+..+.+.++.+++.+|.|++.
T Consensus 99 ~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllM 138 (220)
T COG0036 99 HRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLM 138 (220)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEE
Confidence 46778899999888 4555556677888899999999984
No 290
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=42.00 E-value=2.1e+02 Score=24.82 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHh--CCCeEEEEeCCCChH----HHHHhh-cCCCEEEECC
Q 039121 81 SYISASYVKFAES--GGARVIPLIFNEPEE----ILFEKL-ELVNGILYTG 124 (232)
Q Consensus 81 ~yi~~s~v~~l~~--~G~~vv~i~~~~~~e----~l~~~l-~~~dGlIl~G 124 (232)
.-+...+.+.+++ .|..+.......+.+ .++..+ .++||+|+.+
T Consensus 15 ~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~ 65 (303)
T cd01539 15 SLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNL 65 (303)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 3445566777887 777777665543332 233333 3799999975
No 291
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=41.64 E-value=1.1e+02 Score=33.33 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=53.6
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC-C-hHHHHH-hh------cCCCEEEE-CCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE-P-EEILFE-KL------ELVNGILY-TGG 125 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~-~-~e~l~~-~l------~~~dGlIl-~GG 125 (232)
.+|+|||+....... .....+++ .+++.+|+.|+.|+++.... + ...+.+ .+ ..+|+||= +|.
T Consensus 265 ~~p~Vgil~~r~~~~------~~~~~~id-alI~~LE~~G~~vipvf~~gl~~~~~~~~~~~~~~~~~~~vDaiIn~tgF 337 (1220)
T PLN03069 265 DAPVVGLVLQRSHIV------TGDDGHYV-AVVMELEARGAKVVPIFAGGLDFSGPVERFFYDPITKKPIVDSVVSLTGF 337 (1220)
T ss_pred CCCEEEEEechhhhh------cCCcHHHH-HHHHHHHHCCCeEEEEEecCccccchHHHHHHhhhcCCCCccEEEECCcc
Confidence 479999998754321 12344554 68889999999999876432 1 111211 11 24798883 432
Q ss_pred CCC-CccChhHHHHHHHHHHHhcCCCCCccEee-hhHHHHHHHHHH
Q 039121 126 WAK-SGLYYDIVEKIFKKILEKNDAGDHFPVYA-ICLGFELLSMIV 169 (232)
Q Consensus 126 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~PILG-IClG~QlL~~~~ 169 (232)
.-. .+.. .......+...+. ++|+|- +-+-+|-+..+.
T Consensus 338 ~L~ggpa~-~~~~~a~~~L~~l-----nVPvl~~~~l~~qt~e~W~ 377 (1220)
T PLN03069 338 ALVGGPAR-QDHPKAIEALKKL-----DVPYLVALPLVFQTTEEWL 377 (1220)
T ss_pred cccCCccc-ccchhhHHHHHHC-----CCCEEEEEecCCCCHHHHH
Confidence 211 1111 1111112222222 599986 445567777764
No 292
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.53 E-value=2.2e+02 Score=24.22 Aligned_cols=44 Identities=18% Similarity=0.041 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 82 YISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
-+...+.+.+++.|..++......+.+. ++... .++||||+.+.
T Consensus 17 ~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 17 GVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred HHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3455677788889998877654333322 22222 37999999863
No 293
>PRK00170 azoreductase; Reviewed
Probab=41.18 E-value=1.6e+02 Score=24.02 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=26.5
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC--CCeEEEEeC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESG--GARVIPLIF 103 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~--G~~vv~i~~ 103 (232)
+.++.|.+.|.... .....+...+++.+++. |.++..+..
T Consensus 2 mkil~i~gSpr~~~-------s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 2 SKVLVIKSSILGDY-------SQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred CeEEEEecCCCCCC-------cHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 34778888875421 23456777788888887 777766643
No 294
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=41.15 E-value=1.3e+02 Score=25.11 Aligned_cols=46 Identities=24% Similarity=0.150 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..-+.....+.+++.|..+++.....+.+. +.... .++||||+.+.
T Consensus 14 ~~~i~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (260)
T cd06286 14 FSQLVDGIEKAALKHGYKVVLLQTNYDKEKELEYLELLKTKQVDGLILCSR 64 (260)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344556777888889999887765544321 22222 25899999764
No 295
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=41.05 E-value=1.2e+02 Score=25.43 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 82 YISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
-+...+.+.+++.|..++......+.+. ++..+ .++||||+.+.
T Consensus 16 ~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 16 PLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 4455677788889998887654333221 22222 37999999864
No 296
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.79 E-value=1.5e+02 Score=24.89 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..+...+.+.+++.|..+.+.....+.+. ++... .++||+|+.+-
T Consensus 15 ~~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 15 AELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 34556777888899998877654433322 12222 36999999863
No 297
>PRK11914 diacylglycerol kinase; Reviewed
Probab=40.66 E-value=2.5e+02 Score=24.85 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=35.3
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhh-----cCCCEEEECCCCC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKL-----ELVNGILYTGGWA 127 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l-----~~~dGlIl~GG~~ 127 (232)
..+.|.-+|..+. ....-.....++.+++.|..+.++.... ..+..++. +.+|.||+.||.+
T Consensus 9 ~~~~iI~NP~sG~-------g~~~~~~~~~~~~l~~~g~~~~~~~t~~-~~~~~~~a~~~~~~~~d~vvv~GGDG 75 (306)
T PRK11914 9 GKVTVLTNPLSGH-------GAAPHAAERAIARLHHRGVDVVEIVGTD-AHDARHLVAAALAKGTDALVVVGGDG 75 (306)
T ss_pred ceEEEEECCCCCC-------CcHHHHHHHHHHHHHHcCCeEEEEEeCC-HHHHHHHHHHHHhcCCCEEEEECCch
Confidence 3466666765432 1112223466778999998776554332 22222222 3578999999875
No 298
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=40.49 E-value=1.4e+02 Score=26.13 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCC--eE-EEEeCCCChHHHHHhhcCCCEEEEC
Q 039121 85 ASYVKFAESGGA--RV-IPLIFNEPEEILFEKLELVNGILYT 123 (232)
Q Consensus 85 ~s~v~~l~~~G~--~v-v~i~~~~~~e~l~~~l~~~dGlIl~ 123 (232)
....+.+++.|. ++ +.+....+.+.+..+++.+|.|++.
T Consensus 106 ~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiM 147 (228)
T PRK08091 106 ALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQIL 147 (228)
T ss_pred HHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEE
Confidence 456788999998 66 5555566778888889999999883
No 299
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=40.29 E-value=2.5e+02 Score=24.44 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=36.4
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
...||++...... ....-+...+.+.+++.|..+.+.....+.+. +..+. .++||||+.+.
T Consensus 60 ~~~Igvi~~~~~~--------~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 60 SRTIGLVIPDLEN--------YSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred CceEEEEeCCCCC--------ccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3589998642211 12233455677778889999887765433322 22222 36999999764
No 300
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=40.21 E-value=2.7e+02 Score=28.22 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=21.1
Q ss_pred CCeEEEEeC-CCChHHHHHhh------cCCCEEEECCCCCCC
Q 039121 95 GARVIPLIF-NEPEEILFEKL------ELVNGILYTGGWAKS 129 (232)
Q Consensus 95 G~~vv~i~~-~~~~e~l~~~l------~~~dGlIl~GG~~~~ 129 (232)
|++++.... ..+.+.+.+.+ +.+|-||.+||....
T Consensus 496 G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGGts~g 537 (659)
T PLN02699 496 GAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGGTGFT 537 (659)
T ss_pred CcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCccCC
Confidence 887764432 23444443322 358999999997643
No 301
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=40.03 E-value=1.2e+02 Score=25.22 Aligned_cols=46 Identities=17% Similarity=-0.002 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHHH----HHhh-cCCCEEEECCC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEIL----FEKL-ELVNGILYTGG 125 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l----~~~l-~~~dGlIl~GG 125 (232)
..-+...+.+.+++.|..++......+.+.. +... ..+||||+.+.
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (265)
T cd06291 14 FSELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH 64 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3344556677888899988776544333221 2222 36999999874
No 302
>PRK10342 glycerate kinase I; Provisional
Probab=40.00 E-value=40 Score=31.82 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=27.8
Q ss_pred HHHHhhcCCCEEEECC-CCCCC-ccChhHHHHHHHHHHHhcCCCCCccEeehh
Q 039121 109 ILFEKLELVNGILYTG-GWAKS-GLYYDIVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 109 ~l~~~l~~~dGlIl~G-G~~~~-~~~~~~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
.+++.++.+| +|||| |.... ..+-+.-..+.+.+... ++|+..||
T Consensus 277 ~l~~~l~~AD-LVITGEG~~D~QTl~GK~p~gVa~~A~~~-----~vPviai~ 323 (381)
T PRK10342 277 NLEEHIHDCT-LVITGEGRIDSQSIHGKVPIGVANVAKKY-----HKPVIGIA 323 (381)
T ss_pred CHHHHhccCC-EEEECCCcCcccccCCccHHHHHHHHHHh-----CCCEEEEe
Confidence 3556677888 78898 76522 22222233455555544 59999999
No 303
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=39.95 E-value=1.2e+02 Score=24.63 Aligned_cols=56 Identities=18% Similarity=0.055 Sum_probs=37.2
Q ss_pred HHHHhCCCeEEEEeCCCChHHHHHhh--cCCCEEEECCCCCCCccChhHHHHHHHHHHHhc
Q 039121 89 KFAESGGARVIPLIFNEPEEILFEKL--ELVNGILYTGGWAKSGLYYDIVEKIFKKILEKN 147 (232)
Q Consensus 89 ~~l~~~G~~vv~i~~~~~~e~l~~~l--~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~ 147 (232)
+.++.+|++|+......+++++-... +.+|.|.+|+=.. .+.....++++.+.++.
T Consensus 34 ~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g---~h~~l~~~lve~lre~G 91 (143)
T COG2185 34 RALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDG---GHLTLVPGLVEALREAG 91 (143)
T ss_pred HHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccc---hHHHHHHHHHHHHHHhC
Confidence 47999999999888777777664333 4689999997332 12233445566655543
No 304
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.77 E-value=2.2e+02 Score=23.56 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhCCCeEEEEeCCCChH---HHHHhh-cCCCEEEECCC
Q 039121 83 ISASYVKFAESGGARVIPLIFNEPEE---ILFEKL-ELVNGILYTGG 125 (232)
Q Consensus 83 i~~s~v~~l~~~G~~vv~i~~~~~~e---~l~~~l-~~~dGlIl~GG 125 (232)
+...+.+.+++.|..+..+..+.+.+ .++..+ .++||+|+.+.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 17 LLEALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 34556778888999988776543321 122222 36999999764
No 305
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=39.74 E-value=1.5e+02 Score=23.90 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=33.0
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHH-hCCCeEEEEeCCC--------------C--hHHHHHhhcCCCEEE
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAE-SGGARVIPLIFNE--------------P--EEILFEKLELVNGIL 121 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~-~~G~~vv~i~~~~--------------~--~e~l~~~l~~~dGlI 121 (232)
+++|.+.+..+ ..+..+...+.+.++ +.|.++..+.... + .+.+.+.+..+|+||
T Consensus 2 Il~i~GS~r~~--------s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iI 73 (174)
T TIGR03566 2 VVGVSGSLTRP--------SRTLALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLV 73 (174)
T ss_pred EEEEECCCCCC--------ChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEE
Confidence 56777776532 134456666666664 4577665553211 1 123445667899998
Q ss_pred EC
Q 039121 122 YT 123 (232)
Q Consensus 122 l~ 123 (232)
|.
T Consensus 74 i~ 75 (174)
T TIGR03566 74 VG 75 (174)
T ss_pred EE
Confidence 85
No 306
>PRK06851 hypothetical protein; Provisional
Probab=39.46 E-value=87 Score=29.34 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=38.7
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECC-CC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTG-GW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~G-G~ 126 (232)
..++-|+..|+. +++.+...+.+.+.+.|..+..+....++ +.+||||+|. +-
T Consensus 30 ~~~~il~G~pGt----------GKStl~~~i~~~~~~~g~~Ve~~~~~~d~-------~slDgviip~l~~ 83 (367)
T PRK06851 30 NRIFILKGGPGT----------GKSTLMKKIGEEFLEKGYDVEFLHCSSDN-------DSLDGVIIPELKI 83 (367)
T ss_pred ceEEEEECCCCC----------CHHHHHHHHHHHHHHcCCeEEEEEcCCCC-------CceeeEEecCCCE
Confidence 466777777764 45666778888888889988877655443 3689999988 53
No 307
>KOG2371 consensus Molybdopterin biosynthesis protein [Coenzyme transport and metabolism]
Probab=39.06 E-value=99 Score=29.21 Aligned_cols=77 Identities=19% Similarity=0.174 Sum_probs=44.5
Q ss_pred CCCCCEEEEeCCCCCCCC-CCcCCccchhhhHHHHHHHHHhCCCeEEEEe-CCCCh----HHHHHhhcCCCEEEECCCCC
Q 039121 54 LNYRPVIGILSHPGDGAS-GRLSNATNASYISASYVKFAESGGARVIPLI-FNEPE----EILFEKLELVNGILYTGGWA 127 (232)
Q Consensus 54 ~~~~PvIGI~~~~~~~~~-~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~-~~~~~----e~l~~~l~~~dGlIl~GG~~ 127 (232)
.+.+|+|-|++.-.+.+. .+..++...+.-....+..+.+.|+.++-.- ...+. +.+.+..+.+|-||-+||-.
T Consensus 186 iykkpvVtV~sTgSel~~~d~~~pg~v~~~n~s~l~~l~~~~Gf~~i~~gvv~D~~~~i~e~L~e~~~~aDvIlTtGGvs 265 (411)
T KOG2371|consen 186 IYKKPVVTVSSTGSELNSPDRSGPGMVRDSNRSQLLELFQEHGFTAIDAGVVPDDVTRIKEKLREASSFADVILTTGGVS 265 (411)
T ss_pred eecccEEEEeeccccccCccccCCceeeecchHHHHHHHHHhCccccccccccCcHHHHHHHHHHhhhhccEEEecCCcc
Confidence 456899999976544332 1112233344445566777888888743111 11222 33445556789999999987
Q ss_pred CCc
Q 039121 128 KSG 130 (232)
Q Consensus 128 ~~~ 130 (232)
+.+
T Consensus 266 m~~ 268 (411)
T KOG2371|consen 266 MGP 268 (411)
T ss_pred ccc
Confidence 543
No 308
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=39.04 E-value=1.5e+02 Score=23.11 Aligned_cols=77 Identities=8% Similarity=-0.040 Sum_probs=39.6
Q ss_pred chhhhHHHHHHHHHhCCCeEEE-EeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEee
Q 039121 79 NASYISASYVKFAESGGARVIP-LIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~-i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILG 157 (232)
.+..++..+.+.++..|..+.+ .... +.+.....+..+|.|+|.-............+.+++.... .++.+=++|
T Consensus 13 nTe~iA~~ia~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~---~~k~~avfg 88 (140)
T TIGR01754 13 NTEEVAFMIQDYLQKDGHEVDILHRIG-TLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGY---KPSNVAIFG 88 (140)
T ss_pred hHHHHHHHHHHHHhhCCeeEEeccccc-ccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc---cCCEEEEEE
Confidence 4667888888888888887652 2211 1011111244678887765321111122244555554322 234556677
Q ss_pred hh
Q 039121 158 IC 159 (232)
Q Consensus 158 IC 159 (232)
.|
T Consensus 89 tg 90 (140)
T TIGR01754 89 TG 90 (140)
T ss_pred cC
Confidence 65
No 309
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=39.03 E-value=1.9e+02 Score=25.15 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=37.3
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
..+||++...... .....+...+.+.+++.|..+.+.....+.+. ++.+. .++||||+.+..
T Consensus 56 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 122 (327)
T PRK10423 56 TRTIGMLITASTN--------PFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTE 122 (327)
T ss_pred CCeEEEEeCCCCC--------CcHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4689988743211 12334556777888889998877654333322 22222 369999998644
No 310
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=38.69 E-value=1.7e+02 Score=25.53 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=35.3
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..+||+.....+. ....-+...+.+.+++.|..+.+.....+.+. +..+. .++||+|+.+.
T Consensus 59 ~~~Ig~i~~~~~~--------~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~ 124 (311)
T TIGR02405 59 DKVVAVIVSRLDS--------PSENLAVSGMLPVFYTAGYDPIIMESQFSPQLTNEHLSVLQKRNVDGVILFGF 124 (311)
T ss_pred CCEEEEEeCCccc--------ccHHHHHHHHHHHHHHCCCeEEEecCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4689998742111 11223445667778888998877654333322 22222 26999999864
No 311
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=38.55 E-value=48 Score=31.21 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=27.5
Q ss_pred HHHHhhcCCCEEEECC-CCCCCccChh-HHHHHHHHHHHhcCCCCCccEeehh
Q 039121 109 ILFEKLELVNGILYTG-GWAKSGLYYD-IVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 109 ~l~~~l~~~dGlIl~G-G~~~~~~~~~-~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
.+++.++.+| +|||| |....-...+ ....+.+.+... ++|+..||
T Consensus 276 ~l~~~l~~AD-lVITGEG~~D~Qtl~GK~p~~Va~~A~~~-----~vPviai~ 322 (375)
T TIGR00045 276 DLEQKIKDAD-LVITGEGRLDRQSLMGKAPVGVAKRAKKY-----GVPVIAIA 322 (375)
T ss_pred CHHHHhcCCC-EEEECCCcccccccCCchHHHHHHHHHHh-----CCeEEEEe
Confidence 3566778888 78888 7642212222 233455555544 59999998
No 312
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=38.50 E-value=78 Score=28.65 Aligned_cols=59 Identities=15% Similarity=0.266 Sum_probs=40.8
Q ss_pred HHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEe----ehhHHHHHHHHHHcC
Q 039121 108 EILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVY----AICLGFELLSMIVSE 171 (232)
Q Consensus 108 e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PIL----GIClG~QlL~~~~GG 171 (232)
+.+++++++.+++|+-.|-+-++.......++++++..+ ++|+. |+=+=-|.....++|
T Consensus 93 ~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~-----dvP~VIDaDGL~Lv~q~~e~l~~~ 155 (306)
T KOG3974|consen 93 DIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGK-----DVPLVIDADGLWLVEQLPERLIGG 155 (306)
T ss_pred hHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcC-----CCcEEEcCCceEehhhchhhhhcc
Confidence 445667899999999877765676667778888888765 58886 444444555544444
No 313
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=38.45 E-value=1.7e+02 Score=21.91 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=36.7
Q ss_pred HHHHHHhCCCeEEEEeCCCChHHHHHhhc--CCCEEEECCCCCCCccChhHHHHHHHHHHHh
Q 039121 87 YVKFAESGGARVIPLIFNEPEEILFEKLE--LVNGILYTGGWAKSGLYYDIVEKIFKKILEK 146 (232)
Q Consensus 87 ~v~~l~~~G~~vv~i~~~~~~e~l~~~l~--~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~ 146 (232)
+..++++.|.+++.+-.+.+.+++.+.+. ++|.|.++.... ......+++++...+.
T Consensus 19 ~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~---~~~~~~~~~i~~l~~~ 77 (119)
T cd02067 19 VARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLT---THMTLMKEVIEELKEA 77 (119)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccc---ccHHHHHHHHHHHHHc
Confidence 34578999999987766666666654343 689999987533 2334556666665443
No 314
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=38.09 E-value=1.2e+02 Score=25.29 Aligned_cols=44 Identities=11% Similarity=-0.010 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhh-cCCCEEEECCC
Q 039121 82 YISASYVKFAESGGARVIPLIFNEPEEILFEKL-ELVNGILYTGG 125 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l-~~~dGlIl~GG 125 (232)
-+...+.+.+++.|..+.+.......+.++.+. .++||||+.+.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 16 ELVTGINQAISKNGYNMNVSITPSLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccHHHHHHHHHHcCcCEEEEeCC
Confidence 344567777888898887765432222223322 27999999864
No 315
>PF13941 MutL: MutL protein
Probab=37.67 E-value=1.7e+02 Score=28.30 Aligned_cols=42 Identities=33% Similarity=0.321 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCeEEEEe-CCCChHHHHHhhc-CCCEEEECCCCC
Q 039121 86 SYVKFAESGGARVIPLI-FNEPEEILFEKLE-LVNGILYTGGWA 127 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~-~~~~~e~l~~~l~-~~dGlIl~GG~~ 127 (232)
+-.++...+|++++-+. +..+.++++++.+ ++|.|+|.||-+
T Consensus 92 AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~~PDiILLaGGtD 135 (457)
T PF13941_consen 92 AAKRAALGAGARVLQVYSYELTEEDLEEIREIRPDIILLAGGTD 135 (457)
T ss_pred HHHHHHhcCCcEEEEEeccCCCHHHHHHHhccCCCEEEEeCCcc
Confidence 33345567899886554 5556666666443 689999999987
No 316
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.99 E-value=1.6e+02 Score=24.49 Aligned_cols=46 Identities=15% Similarity=-0.010 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhhc-CCCEEEECCCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEI----LFEKLE-LVNGILYTGGW 126 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l~-~~dGlIl~GG~ 126 (232)
..+...+.+.+++.|..+++.....+.+. ++.+.. ++||+|+.+..
T Consensus 15 ~~~~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~ 65 (265)
T cd06290 15 GRILKGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGGD 65 (265)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34455667788889998887765444322 222222 59999998643
No 317
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=36.86 E-value=1.8e+02 Score=25.84 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=30.3
Q ss_pred cchhhhHHHHHHHHHhCCCeEEEEeCCC-ChHH----HHHhhcCCCEEEECCCCC
Q 039121 78 TNASYISASYVKFAESGGARVIPLIFNE-PEEI----LFEKLELVNGILYTGGWA 127 (232)
Q Consensus 78 ~~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~----l~~~l~~~dGlIl~GG~~ 127 (232)
++.+|++. .|.+.|..+..+.+.- +.++ +....+++|-||+|||=+
T Consensus 21 tNa~~la~----~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG 71 (255)
T COG1058 21 TNAAFLAD----ELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLG 71 (255)
T ss_pred chHHHHHH----HHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 35556654 6999999886655433 3333 334456799999999654
No 318
>PRK09492 treR trehalose repressor; Provisional
Probab=36.60 E-value=2e+02 Score=24.90 Aligned_cols=60 Identities=18% Similarity=0.087 Sum_probs=35.6
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
.+||+....... .....+...+.+.+++.|..+.+.....+.+. +..+. .++||+|+.+.
T Consensus 63 ~~Ig~i~~~~~~--------~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 127 (315)
T PRK09492 63 KVVGIIVSRLDS--------LSENQAVRTMLPAFYEQGYDPIIMESQFSPEKVNEHLGVLKRRNVDGVILFGF 127 (315)
T ss_pred CeEEEEecCCcC--------cccHHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 579998642211 12234556777888899998877654333322 12221 26899999763
No 319
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.04 E-value=2.7e+02 Score=23.58 Aligned_cols=44 Identities=7% Similarity=-0.295 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTG 124 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~G 124 (232)
.-+...+.+.+++.|..+.......+.+. ++..+ .++||||+.+
T Consensus 15 ~~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~ 63 (272)
T cd06313 15 AQGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDP 63 (272)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 34556677778889998887754433322 22222 3689999975
No 320
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=36.01 E-value=1.1e+02 Score=27.22 Aligned_cols=80 Identities=24% Similarity=0.234 Sum_probs=43.7
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHH-------HhhcCCCEEEECCCCCCCcc
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILF-------EKLELVNGILYTGGWAKSGL 131 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~-------~~l~~~dGlIl~GG~~~~~~ 131 (232)
.|||..++... ....+...+..++...+..+....- ..+.+. ..-+.+|.++.-||.+
T Consensus 2 ~~~i~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~d~ivvlGGDG---- 66 (281)
T COG0061 2 KVGIVGRPDKP---------EALKIAKRLYEFLKFKGVTVEVDQE--LAEELKDFADYVDDDEEKADLIVVLGGDG---- 66 (281)
T ss_pred eEEEEecCCcH---------HHHHHHHHHHHHHHhcCceEEEech--hhhhcccccccccccccCceEEEEeCCcH----
Confidence 47888776532 2344566778888887776655321 111111 0013467777776655
Q ss_pred ChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 132 YYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
......+... ..++||+||-+|
T Consensus 67 ---tlL~~~~~~~-----~~~~pilgin~G 88 (281)
T COG0061 67 ---TLLRAARLLA-----RLDIPVLGINLG 88 (281)
T ss_pred ---HHHHHHHHhc-----cCCCCEEEEeCC
Confidence 1111222222 234899999999
No 321
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=35.98 E-value=1.3e+02 Score=27.04 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=30.3
Q ss_pred HHHhCCCeEEEEeCCCChHHHHHhhcCC-CEEEECCCCCC
Q 039121 90 FAESGGARVIPLIFNEPEEILFEKLELV-NGILYTGGWAK 128 (232)
Q Consensus 90 ~l~~~G~~vv~i~~~~~~e~l~~~l~~~-dGlIl~GG~~~ 128 (232)
.-.+.|+.++-..|..+.+..++..+.+ -.||+.||+..
T Consensus 174 laaelGADIiK~~ytg~~e~F~~vv~~~~vpVviaGG~k~ 213 (265)
T COG1830 174 LAAELGADIIKTKYTGDPESFRRVVAACGVPVVIAGGPKT 213 (265)
T ss_pred HHHHhcCCeEeecCCCChHHHHHHHHhCCCCEEEeCCCCC
Confidence 3456799999999988777777666543 68999999974
No 322
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=35.08 E-value=2.2e+02 Score=24.80 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=35.7
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
.-.|||+...... .....+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+.
T Consensus 59 ~~~Igvv~~~~~~--------~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 59 TTTVGVIIPDISN--------IYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CCEEEEEeCCCCc--------hhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4589998742211 12333455666778888998877654433322 12222 36999999763
No 323
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=34.84 E-value=2e+02 Score=23.52 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=19.3
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCC
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNE 105 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~ 105 (232)
++..+.....+++++.+..+.++....
T Consensus 3 GD~~i~~~~~~~l~~~~~~~~~~~~~~ 29 (286)
T PF04230_consen 3 GDDLILEALLKLLKKHGPDAEIIIFSP 29 (286)
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 466788899999999886555554443
No 324
>PRK09932 glycerate kinase II; Provisional
Probab=34.47 E-value=53 Score=30.96 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=27.0
Q ss_pred HHHHhhcCCCEEEECC-CCCCCccChh-HHHHHHHHHHHhcCCCCCccEeehh
Q 039121 109 ILFEKLELVNGILYTG-GWAKSGLYYD-IVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 109 ~l~~~l~~~dGlIl~G-G~~~~~~~~~-~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
.+++.++.+| +|||| |....-...+ ..-.+.+.+... ++|+..||
T Consensus 277 ~l~~~l~~AD-lVITGEG~~D~Qt~~GK~p~~Va~~A~~~-----~~Pvi~i~ 323 (381)
T PRK09932 277 NLEQAVQGAA-LVITGEGRIDSQTAGGKAPLGVASVAKQF-----NVPVIGIA 323 (381)
T ss_pred ChHHHhccCC-EEEECCCcccccccCCccHHHHHHHHHHc-----CCCEEEEe
Confidence 3556678888 78888 7642211222 223445555444 59999999
No 325
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=34.25 E-value=2.8e+02 Score=23.25 Aligned_cols=45 Identities=18% Similarity=0.075 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHhCCCeEEEEe-CCCChHH----HHHhh-cCCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLI-FNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~-~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..+...+.+.+++.|..+.++. ...+.+. ++.+. .++||+|+.+.
T Consensus 14 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 14 KIAEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred HHHHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3455667778888999887763 2223221 22222 37999999863
No 326
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=33.67 E-value=1.6e+02 Score=29.35 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEe
Q 039121 47 CPAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLI 102 (232)
Q Consensus 47 ~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~ 102 (232)
+..++. -..||+|||.+...+...++ ....-+...+.+.++++|+.++-.+
T Consensus 33 ~G~~~~-~~~kP~IgI~~s~~d~~p~h----~hl~~l~~~vk~~i~~aGg~p~ef~ 83 (575)
T COG0129 33 TGLTDE-DFGKPIIGIANSYNDMVPGH----QHLKDLAQLVKEGIREAGGVPVEFG 83 (575)
T ss_pred hCCChH-HcCCCeEEEEeccccCcCch----hhHHHHHHHHHHHHHHcCCceeEeC
Confidence 344444 34799999999887654321 2233345566778888997776554
No 327
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=33.42 E-value=1.9e+02 Score=24.12 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=36.2
Q ss_pred chhhhHHHHHHHHHhC-CCeEEEEeCCCC-hHHH----------------HHhhcCCCEEEECCCCCCCccChhHHHHHH
Q 039121 79 NASYISASYVKFAESG-GARVIPLIFNEP-EEIL----------------FEKLELVNGILYTGGWAKSGLYYDIVEKIF 140 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~-G~~vv~i~~~~~-~e~l----------------~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~ 140 (232)
++.-++..+.+-+++. |+++.++..... .++. .+.+..+|+|+|--... ........+.++
T Consensus 13 ~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty-~g~~~~~lk~fl 91 (197)
T TIGR01755 13 HIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR-FGNMASQMRNFL 91 (197)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc-ccCccHHHHHHH
Confidence 4556777778888875 888877664321 1111 13356799988854322 222333455555
Q ss_pred HHH
Q 039121 141 KKI 143 (232)
Q Consensus 141 ~~~ 143 (232)
+..
T Consensus 92 d~~ 94 (197)
T TIGR01755 92 DQT 94 (197)
T ss_pred Hhc
Confidence 554
No 328
>PRK05568 flavodoxin; Provisional
Probab=33.27 E-value=2e+02 Score=22.05 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=31.1
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECC
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTG 124 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~G 124 (232)
++..++..+.+.+++.|..+.++...... .. .+...|+|+|--
T Consensus 14 nT~~~a~~i~~~~~~~g~~v~~~~~~~~~--~~-~~~~~d~iilgs 56 (142)
T PRK05568 14 NTEAMANLIAEGAKENGAEVKLLNVSEAS--VD-DVKGADVVALGS 56 (142)
T ss_pred hHHHHHHHHHHHHHHCCCeEEEEECCCCC--HH-HHHhCCEEEEEC
Confidence 57788888888899999988877765432 12 256789888854
No 329
>PRK07667 uridine kinase; Provisional
Probab=32.89 E-value=1.1e+02 Score=25.41 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFN 104 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~ 104 (232)
.+.+|||.+.++. +++.+++.+.+.+.+.|..+..+..+
T Consensus 16 ~~~iIgI~G~~gs----------GKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 16 NRFILGIDGLSRS----------GKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred CCEEEEEECCCCC----------CHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 4578999988774 46788888889998888877777654
No 330
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=32.67 E-value=1.3e+02 Score=22.91 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhh---cCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehh
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKL---ELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l---~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
++..+.|++.|.+++... +.++....+ ..+.+||++=- +.......++++...+++ .++|||-+-
T Consensus 7 ~~l~~~L~~~~~~vv~~~---~~dd~~~~i~~~~~i~avvi~~d----~~~~~~~~~ll~~i~~~~---~~iPVFl~~ 74 (115)
T PF03709_consen 7 RELAEALEQRGREVVDAD---STDDALAIIESFTDIAAVVISWD----GEEEDEAQELLDKIRERN---FGIPVFLLA 74 (115)
T ss_dssp HHHHHHHHHTTTEEEEES---SHHHHHHHHHCTTTEEEEEEECH----HHHHHHHHHHHHHHHHHS---TT-EEEEEE
T ss_pred HHHHHHHHHCCCEEEEeC---ChHHHHHHHHhCCCeeEEEEEcc----cccchhHHHHHHHHHHhC---CCCCEEEEe
Confidence 467788998999888764 233333333 46789998721 111134556677666654 579999764
No 331
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=32.59 E-value=3.2e+02 Score=23.61 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCC------CC----h--HHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHH
Q 039121 81 SYISASYVKFAESGGARVIPLIFN------EP----E--EILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKIL 144 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~------~~----~--e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l 144 (232)
.-+.+...+.+...|+++.++... .+ + ..+.+.++.+||+||.= |..+..+....+..++++-
T Consensus 43 ~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~T-PEYn~sipg~LKNaiDwls 117 (219)
T TIGR02690 43 RLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCS-PERHGAITGSQKDQIDWIP 117 (219)
T ss_pred HHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeC-CccccCcCHHHHHHHHhcc
Confidence 345555566677668888666431 11 1 23456667899998852 1111223344566666554
No 332
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=32.41 E-value=1.2e+02 Score=23.34 Aligned_cols=40 Identities=25% Similarity=0.190 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCC
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGW 126 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~ 126 (232)
....+.|++ |.++.... ..+.+++.+.++.+|+++..++.
T Consensus 9 ~~~~~~l~~-~~~v~~~~-~~~~~~~~~~l~~~d~ii~~~~~ 48 (133)
T PF00389_consen 9 DEEIERLEE-GFEVEFCD-SPSEEELAERLKDADAIIVGSGT 48 (133)
T ss_dssp HHHHHHHHH-TSEEEEES-SSSHHHHHHHHTTESEEEESTTS
T ss_pred HHHHHHHHC-CceEEEeC-CCCHHHHHHHhCCCeEEEEcCCC
Confidence 345566777 77666555 55677788888999999987766
No 333
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.87 E-value=2.2e+02 Score=23.67 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHh-hcCCCEEEECC
Q 039121 82 YISASYVKFAESGGARVIPLIFNEPEEI----LFEK-LELVNGILYTG 124 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~-l~~~dGlIl~G 124 (232)
-+...+.+.+++.|..+++...+.+.+. ++.. -..+||||+.+
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~ 63 (265)
T cd06285 16 TMYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGD 63 (265)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 3445677788889998876554433322 1111 13789999975
No 334
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=31.82 E-value=2e+02 Score=31.30 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=36.7
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC--ChHHHHHhh-----cCCCEEE
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE--PEEILFEKL-----ELVNGIL 121 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~--~~e~l~~~l-----~~~dGlI 121 (232)
.+|+|||+-...... .....++ ..+++.||+.|..|+++.... ....+++.+ ..+|+||
T Consensus 245 ~~p~Vgil~~r~~~~------~~d~~~~-d~lI~~lE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~vDaiI 310 (1209)
T PRK13405 245 AKGTVGLLLMRSYVL------AGNTAHY-DGVIEALEARGLRVVPAFASGLDGRPAIEAYFMKDGRPTVDAVV 310 (1209)
T ss_pred CCCeEEEEEehhhhh------cCCcHHH-HHHHHHHHHCCCeEEEEEecCccchHHHHHHHhccCCCCccEEE
Confidence 479999997644311 1233444 368889999999998876432 112234443 2479988
No 335
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=31.60 E-value=2.2e+02 Score=27.17 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=59.8
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh-HHHHHhhc--CCCEEE----------
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE-EILFEKLE--LVNGIL---------- 121 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~-e~l~~~l~--~~dGlI---------- 121 (232)
..||.|||++.=-+ +.++. ...+.|++.|.++.+++-+-.- ...+++++ .+|||+
T Consensus 183 ~~kp~I~iTmfGvT-----------Tp~V~-~~~~~Le~~G~Ev~VFHAtG~GG~aME~Li~~G~~~~VlDlTttEl~d~ 250 (403)
T PF06792_consen 183 EDKPLIGITMFGVT-----------TPCVD-AIRERLEEEGYEVLVFHATGTGGRAMERLIREGQFDGVLDLTTTELADE 250 (403)
T ss_pred CCCcEEEEECCCCc-----------HHHHH-HHHHHHHhcCCeEEEEcCCCCchHHHHHHHHcCCcEEEEECcHHHHHHH
Confidence 77999999987322 23443 4567899999999998865432 22333333 578887
Q ss_pred ECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCc
Q 039121 122 YTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSED 172 (232)
Q Consensus 122 l~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~ 172 (232)
+-||-.. ...+.++.+.+. ++|-...|=++-+++ ||..
T Consensus 251 l~GGv~s------agp~Rl~AA~~~-----GIP~Vvs~GalDmVn--Fg~~ 288 (403)
T PF06792_consen 251 LFGGVLS------AGPDRLEAAARA-----GIPQVVSPGALDMVN--FGPP 288 (403)
T ss_pred HhCCCCC------CCchHHHHHHHc-----CCCEEEecCccceec--cCCc
Confidence 2333221 112456777665 599999998888877 5654
No 336
>PRK08211 putative dehydratase; Provisional
Probab=31.41 E-value=2.2e+02 Score=28.89 Aligned_cols=61 Identities=18% Similarity=0.061 Sum_probs=37.9
Q ss_pred ccccccCCCCCCCCCCCCEEEEeCCCCC-----C---CCCCcCCccchhhhHHHHHHHHHhCCCeEEEEe
Q 039121 41 TTFCAHCPAPDPSLNYRPVIGILSHPGD-----G---ASGRLSNATNASYISASYVKFAESGGARVIPLI 102 (232)
Q Consensus 41 ~~~~~~~~~~~~~~~~~PvIGI~~~~~~-----~---~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~ 102 (232)
+|-.+++.-++..+ .||.|||.....+ . +.+.......-.-+.....+-++++|+.++...
T Consensus 46 ~~~~~a~G~~~~dl-~kP~IgI~nt~~~~~~~~~~~~~~~~~pgh~hL~~l~~~vk~gi~~aGG~P~ef~ 114 (655)
T PRK08211 46 MTQNAGMGWDPARL-LGKQFLILSTQGGIRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRNGGIPFAGY 114 (655)
T ss_pred cchhccCCCCHHHc-CCCEEEEEeCCccccccccccccCCCcCCchhHHHHHHHHHHHHHHcCCeeEEeC
Confidence 45556677777776 6999999988763 1 000011112233456667778888999777654
No 337
>PRK06852 aldolase; Validated
Probab=31.24 E-value=2.5e+02 Score=25.63 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCC-----CChHHHHHhhcCC--CEEEECCCCCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFN-----EPEEILFEKLELV--NGILYTGGWAK 128 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~-----~~~e~l~~~l~~~--dGlIl~GG~~~ 128 (232)
++|+ -.++.-.+.||.++-+.|. .+.+...+..+.+ -.||+.||+..
T Consensus 188 ~~ia-~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~ 241 (304)
T PRK06852 188 HLIA-GAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSST 241 (304)
T ss_pred HHHH-HHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCC
Confidence 4554 3456667789999999987 5556677766655 45899999985
No 338
>PRK13055 putative lipid kinase; Reviewed
Probab=31.11 E-value=3e+02 Score=24.91 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCeEEEEeCC-C--ChHHH-HHhh-cCCCEEEECCCCC
Q 039121 85 ASYVKFAESGGARVIPLIFN-E--PEEIL-FEKL-ELVNGILYTGGWA 127 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~-~--~~e~l-~~~l-~~~dGlIl~GG~~ 127 (232)
..+.+.+++.|..+.+.... . ..+++ .+.. +.+|.||+.||.+
T Consensus 23 ~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDG 70 (334)
T PRK13055 23 ADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDG 70 (334)
T ss_pred HHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCC
Confidence 46678899999876554322 1 22222 2222 3578999999876
No 339
>PRK14057 epimerase; Provisional
Probab=30.96 E-value=2.1e+02 Score=25.50 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCe----------EEEEeCCCChHHHHHhhcCCCEEEEC
Q 039121 85 ASYVKFAESGGAR----------VIPLIFNEPEEILFEKLELVNGILYT 123 (232)
Q Consensus 85 ~s~v~~l~~~G~~----------vv~i~~~~~~e~l~~~l~~~dGlIl~ 123 (232)
...++++++.|++ -+.+....+.+.++.+++.+|.|++.
T Consensus 113 ~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvM 161 (254)
T PRK14057 113 HHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLL 161 (254)
T ss_pred HHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEE
Confidence 4567888888863 35565666778888889999999884
No 340
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=30.94 E-value=33 Score=21.92 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 136 VEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 136 ~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.|.+.+..-.+...+-.--.-|-|.|.|+|..+
T Consensus 13 yrqiakesckkgflgvrdgtagacfgaqimvaa 45 (48)
T PF09075_consen 13 YRQIAKESCKKGFLGVRDGTAGACFGAQIMVAA 45 (48)
T ss_dssp HHHHHHHHHHS-SSSSSSSS--TTTTTHHHHTT
T ss_pred HHHHHHHHHhccceeeccCccccccchhhhhhc
Confidence 344444444455555555667899999999754
No 341
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.93 E-value=1e+02 Score=27.10 Aligned_cols=60 Identities=13% Similarity=-0.033 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 82 YISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
-+...+.+++.+.|..+..... .+ .....+|.+|.-||.+ ...... +.. ++||+||-.|
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~---~~---~~~~~~d~vi~iGGDG---T~L~a~----~~~--------~~Pilgin~G 71 (256)
T PRK14075 13 KEAKFLKEKISKEHEVVEFCEA---SA---SGKVTADLIIVVGGDG---TVLKAA----KKV--------GTPLVGFKAG 71 (256)
T ss_pred HHHHHHHHHHHHcCCeeEeecc---cc---cccCCCCEEEEECCcH---HHHHHH----HHc--------CCCEEEEeCC
Confidence 3456777888888876654321 11 1234789999999986 121111 111 4999999877
Q ss_pred H
Q 039121 162 F 162 (232)
Q Consensus 162 ~ 162 (232)
.
T Consensus 72 ~ 72 (256)
T PRK14075 72 R 72 (256)
T ss_pred C
Confidence 4
No 342
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=30.85 E-value=37 Score=31.63 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=27.1
Q ss_pred CCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHH
Q 039121 116 LVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFEL 164 (232)
Q Consensus 116 ~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Ql 164 (232)
.+|-|+|-||.+ ++|++.+.+ +.+.|||||=.|--+
T Consensus 100 gVdlIvfaGGDG-------TarDVa~av------~~~vPvLGipaGvk~ 135 (355)
T COG3199 100 GVDLIVFAGGDG-------TARDVAEAV------GADVPVLGIPAGVKN 135 (355)
T ss_pred CceEEEEeCCCc-------cHHHHHhhc------cCCCceEeeccccce
Confidence 589999999876 566766654 347999999887543
No 343
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=30.67 E-value=2.4e+02 Score=23.40 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCC-hH----HHHHhh-cCCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEP-EE----ILFEKL-ELVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~-~e----~l~~~l-~~~dGlIl~GG 125 (232)
..+.....+.+++.|..+.+...... .+ .++... .++||+|+.+.
T Consensus 15 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 15 SSTLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34556777788888998877654322 11 122222 36999999764
No 344
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=30.33 E-value=3.1e+02 Score=23.43 Aligned_cols=61 Identities=15% Similarity=0.017 Sum_probs=36.1
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..+||++...... ....-+...+.+++++.|..+.......+.+. ++.+. .++||||+.+.
T Consensus 35 ~~~ig~v~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 100 (309)
T PRK11041 35 SRTILVIVPDICD--------PFFSEIIRGIEVTAAEHGYLVLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGS 100 (309)
T ss_pred CcEEEEEeCCCcC--------ccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 4589988753211 12333455677788888988877655433221 22211 36999999864
No 345
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=30.23 E-value=1.7e+02 Score=24.14 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=23.8
Q ss_pred HHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehh
Q 039121 110 LFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 110 l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
+.+.+..+||+|+.=-. .+..+....+..++++-.. .=.++|++-++
T Consensus 61 ~~~~i~~aD~li~~tPe-Yn~s~pg~lKnaiD~l~~~--~~~~Kpv~~~~ 107 (184)
T COG0431 61 LREAIAAADGLIIATPE-YNGSYPGALKNAIDWLSRE--ALGGKPVLLLG 107 (184)
T ss_pred HHHHHHhCCEEEEECCc-cCCCCCHHHHHHHHhCCHh--HhCCCcEEEEe
Confidence 44556789999986221 1222333444444443322 11358855554
No 346
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=30.12 E-value=3.2e+02 Score=26.32 Aligned_cols=79 Identities=6% Similarity=0.053 Sum_probs=44.0
Q ss_pred chhhhHHHHHHHHHhC--CCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccE
Q 039121 79 NASYISASYVKFAESG--GARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPV 155 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~--G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PI 155 (232)
++.-++..+.+.+++. |..+.+..... +.+++...+..+|+|+|- .+...........++++.....+-.++..=+
T Consensus 264 nTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vilG-spT~~~~~~p~~~~fl~~l~~~~l~gK~~~v 342 (479)
T PRK05452 264 NTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVG-SSTMNNVMMPKIAGLLEEITGLRFRNKRASA 342 (479)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEEE-CCccCCcchHHHHHHHHHhhccCcCCCEEEE
Confidence 4667888888899876 55666665543 344444334568988874 3332222223455566655443333444455
Q ss_pred eeh
Q 039121 156 YAI 158 (232)
Q Consensus 156 LGI 158 (232)
||-
T Consensus 343 FGS 345 (479)
T PRK05452 343 FGS 345 (479)
T ss_pred EEC
Confidence 554
No 347
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=30.11 E-value=3.5e+02 Score=23.27 Aligned_cols=45 Identities=13% Similarity=0.077 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHHhCCCe-EEEE-eCCCChH----HHHHhh-cCCCEEEECC
Q 039121 80 ASYISASYVKFAESGGAR-VIPL-IFNEPEE----ILFEKL-ELVNGILYTG 124 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~-vv~i-~~~~~~e----~l~~~l-~~~dGlIl~G 124 (232)
...+...+.+..++.|.. ++.. +.+.+.+ .++..+ .++||||+.+
T Consensus 13 ~~~~~~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~ 64 (302)
T TIGR02637 13 FEAANKGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISA 64 (302)
T ss_pred HHHHHHHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 344556777788888843 3332 2222222 222322 3799999975
No 348
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=29.93 E-value=66 Score=28.94 Aligned_cols=45 Identities=22% Similarity=0.170 Sum_probs=29.1
Q ss_pred EEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHH
Q 039121 119 GILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSM 167 (232)
Q Consensus 119 GlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~ 167 (232)
+|+++||...-| ..++.++..+.....-..-|...++.|.-++..
T Consensus 282 ~IvL~GGss~ip----gl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 282 GIVLTGGGALLR----NLDKLLSKETGLPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred CEEEECcccchh----hHHHHHHHHHCCCceecCChHHHHHHHHHHHHh
Confidence 799999987333 234445554433222334588999999888864
No 349
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=29.91 E-value=97 Score=24.95 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=18.1
Q ss_pred CCCEEEECCCCCCCccChhHHHHHHHHHHHh
Q 039121 116 LVNGILYTGGWAKSGLYYDIVEKIFKKILEK 146 (232)
Q Consensus 116 ~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~ 146 (232)
.++||.|+||. . ..+...++++.+.+.
T Consensus 61 ~~~gVt~SGGE-l---~~~~l~~ll~~lk~~ 87 (147)
T TIGR02826 61 LISCVLFLGGE-W---NREALLSLLKIFKEK 87 (147)
T ss_pred CCCEEEEechh-c---CHHHHHHHHHHHHHC
Confidence 35799999999 3 334456667666543
No 350
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=29.82 E-value=3e+02 Score=24.24 Aligned_cols=61 Identities=10% Similarity=-0.013 Sum_probs=36.2
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..+||+....... .....+...+.+.+++.|..+.+.....+.+. ++.+. .++||+|+.+.
T Consensus 59 ~~~Igvi~~~~~~--------~f~~~l~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~ 124 (346)
T PRK10401 59 SDTIGVVVMDVSD--------AFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSK 124 (346)
T ss_pred CCEEEEEeCCCCC--------ccHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4589988642111 12344556677788888998876554333222 22222 36999999864
No 351
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=29.80 E-value=2.8e+02 Score=24.27 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=35.3
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTG 124 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~G 124 (232)
...||++...... ....-+...+.+.+++.|..+.+.....+.+. ++... .++||||+.+
T Consensus 63 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~ 127 (331)
T PRK14987 63 SRAIGVLLPSLTN--------QVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTE 127 (331)
T ss_pred CCEEEEEeCCCcc--------hhHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3589988642111 12334555677788888998877654433321 22222 3799999975
No 352
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.50 E-value=3.3e+02 Score=22.55 Aligned_cols=45 Identities=13% Similarity=0.089 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChH---HHHHhhc--CCCEEEECCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEE---ILFEKLE--LVNGILYTGG 125 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e---~l~~~l~--~~dGlIl~GG 125 (232)
..+.....+++++.|..+.+.....+.+ .+.+.+. ++||||+.+.
T Consensus 20 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 20 IEVLRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecC
Confidence 3344566677888999887654432222 2333332 5999999764
No 353
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=29.35 E-value=1.4e+02 Score=27.98 Aligned_cols=85 Identities=22% Similarity=0.247 Sum_probs=49.1
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhh--------------------c
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKL--------------------E 115 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l--------------------~ 115 (232)
..|-++|.+.+..+. -+..+.++.|+++|..=+-+..++-+..+.+.+ .
T Consensus 186 ~~~~v~vVSmQTng~-----------~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a 254 (414)
T COG2100 186 EHKGVEVVSMQTNGV-----------LLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANA 254 (414)
T ss_pred cCCCceEEEEeeCce-----------eccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhC
Confidence 346677776654322 345678889999998766666554222111111 1
Q ss_pred CCCEE----EECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeeh
Q 039121 116 LVNGI----LYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAI 158 (232)
Q Consensus 116 ~~dGl----Il~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGI 158 (232)
.+|-| ++||=.+ ++...++++|.+-+ ++++-|.|||
T Consensus 255 ~idvlIaPv~lPG~ND------~E~~~iIe~A~~iG-aGkk~p~lgi 294 (414)
T COG2100 255 GIDVLIAPVWLPGVND------DEMPKIIEWAREIG-AGKKWPPLGI 294 (414)
T ss_pred CCCEEEeeeecCCcCh------HHHHHHHHHHHHhC-CCCCCCCcce
Confidence 23333 2333222 35667889988765 6778888884
No 354
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=29.34 E-value=4e+02 Score=24.06 Aligned_cols=58 Identities=9% Similarity=-0.074 Sum_probs=33.7
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEE-eCCCChH----HHHHhh-cCCCEEEECC
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPL-IFNEPEE----ILFEKL-ELVNGILYTG 124 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i-~~~~~~e----~l~~~l-~~~dGlIl~G 124 (232)
.|+++..-... .....+.....++.++.|..+... +.+.+.+ .++.++ +++|||++.+
T Consensus 25 ~i~~v~k~~~~--------pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~ 88 (336)
T PRK15408 25 RIAFIPKLVGV--------GFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSA 88 (336)
T ss_pred EEEEEECCCCC--------HHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 57777643321 123345566778888899888753 2222221 233333 3699999974
No 355
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.32 E-value=2.5e+02 Score=23.45 Aligned_cols=46 Identities=26% Similarity=0.231 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHH---HHH-hh-cCCCEEEECCC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEI---LFE-KL-ELVNGILYTGG 125 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~---l~~-~l-~~~dGlIl~GG 125 (232)
...+...+.+.+++.|..+.....+.+.+. +.+ +. .++||||+.+.
T Consensus 17 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 17 YSEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 344556777888889998887765543321 112 21 36999999763
No 356
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=29.11 E-value=76 Score=25.50 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=33.7
Q ss_pred HHHHHHhCCCeEEEEeCCC----------ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHH
Q 039121 87 YVKFAESGGARVIPLIFNE----------PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKI 143 (232)
Q Consensus 87 ~v~~l~~~G~~vv~i~~~~----------~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~ 143 (232)
+++.+++.+.++.++..+. ..++.++.++.+|.+++||..-.+. ...++++.+
T Consensus 23 ~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTlvN~----Ti~~iL~~~ 85 (147)
T PF04016_consen 23 LVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTLVNG----TIDDILELA 85 (147)
T ss_dssp CHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHCCTT----THHHHHHHT
T ss_pred HHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeeeecC----CHHHHHHhC
Confidence 3445666778887776543 2335667789999999999776554 334445544
No 357
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=28.82 E-value=3.9e+02 Score=23.26 Aligned_cols=39 Identities=10% Similarity=0.033 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEEC
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYT 123 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~ 123 (232)
...+.++|++.|.+++.+..+.......+ ..++|.|+..
T Consensus 25 ~~~i~~al~~~g~~v~~i~~~~~~~~~~~-~~~~D~v~~~ 63 (304)
T PRK01372 25 GAAVLAALREAGYDAHPIDPGEDIAAQLK-ELGFDRVFNA 63 (304)
T ss_pred HHHHHHHHHHCCCEEEEEecCcchHHHhc-cCCCCEEEEe
Confidence 46788899999999998865543222111 1368988865
No 358
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=28.32 E-value=3e+02 Score=27.63 Aligned_cols=43 Identities=16% Similarity=0.047 Sum_probs=29.0
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEE
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPL 101 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i 101 (232)
..||.|||.+...+...++ +...-++..+.+.++++|+.+...
T Consensus 62 ~~kP~IgIvns~~d~~p~h----~hl~~~~~~vk~~i~~aGg~~~~~ 104 (601)
T TIGR01196 62 MKRPNLAIITAYNDMLSAH----QPFKNYPDLIKKALQEANAVAQVA 104 (601)
T ss_pred cCCCEEEEEeccccCcccc----ccHHHHHHHHHHHHHHCCCEeEEe
Confidence 4799999999887654321 222234555666788889977765
No 359
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=28.03 E-value=41 Score=29.71 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=23.1
Q ss_pred cCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 115 ELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 115 ~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
+.+|.+|.-||.+ +.....+... +.++|||||-.|.
T Consensus 24 ~~~Dlvi~iGGDG-------TlL~a~~~~~-----~~~~PvlGIN~G~ 59 (246)
T PRK04761 24 EEADVIVALGGDG-------FMLQTLHRYM-----NSGKPVYGMNRGS 59 (246)
T ss_pred ccCCEEEEECCCH-------HHHHHHHHhc-----CCCCeEEEEeCCC
Confidence 3589999999976 1112222222 2369999998874
No 360
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=28.01 E-value=3.4e+02 Score=27.16 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=51.9
Q ss_pred cchhhhHHHHHHHHHhCCCeEEEEeCCCC---hHHHHHhh-cCCCEEEECCCCCCCccChhH---------H--------
Q 039121 78 TNASYISASYVKFAESGGARVIPLIFNEP---EEILFEKL-ELVNGILYTGGWAKSGLYYDI---------V-------- 136 (232)
Q Consensus 78 ~~~~yi~~s~v~~l~~~G~~vv~i~~~~~---~e~l~~~l-~~~dGlIl~GG~~~~~~~~~~---------~-------- 136 (232)
..+..|+-++...+...-+.-++....-| +..+-... -++=.|++|||+...+.+-.. .
T Consensus 103 ~SRelIAds~e~~~~~~~~Da~V~i~~CDKi~PG~lmaa~r~niPaIfv~gGpM~~G~~~~~~~~~~~~~~~~~~~~aG~ 182 (575)
T COG0129 103 PSRELIADSVEEVLSAHPFDGVVLIGGCDKITPGMLMAAARLNIPAIFVSGGPMLAGKVNGEKAGGTSVFEAVGAYAAGK 182 (575)
T ss_pred ccHHHHHHHHHHHHhccCcceEEEecCCCCccHHHHHHHHhcCCCEEEecCCcCCCCccCCccccchhHHHHHHHHHcCC
Confidence 45677777777777766555444433322 33333311 256799999999744322100 0
Q ss_pred --HHHHHHHHHhcCCCCCccEeehhHH------HHHHHHHHcCc
Q 039121 137 --EKIFKKILEKNDAGDHFPVYAICLG------FELLSMIVSED 172 (232)
Q Consensus 137 --~~~~~~~l~~~~~~~~~PILGIClG------~QlL~~~~GG~ 172 (232)
++.+..+ +++ -.|--|.|-| ||.|++++|=.
T Consensus 183 is~ee~~~~-E~~----acps~GsC~~mgTAnTm~~l~EaLGls 221 (575)
T COG0129 183 ISREELLEI-ERS----ACPSPGSCSGMGTANTMNCLAEALGLS 221 (575)
T ss_pred CCHHHHHHH-HHh----cCCCCCcccccccHhHHHHHHHHHcCC
Confidence 1112222 222 3799999988 59999998855
No 361
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=27.68 E-value=4.9e+02 Score=24.01 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=45.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhc-CCCEEEECC-CCC-CCccChhHHHHHHHHHHH-hcCCCCCccEe---eh
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLE-LVNGILYTG-GWA-KSGLYYDIVEKIFKKILE-KNDAGDHFPVY---AI 158 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~-~~dGlIl~G-G~~-~~~~~~~~~~~~~~~~l~-~~~~~~~~PIL---GI 158 (232)
..++++++..-.++++--..+.++.....+ .+|+|+++| |.. .+.. ..... .+..+.+ ....++++||+ ||
T Consensus 203 ~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~-~~~~~-~L~~i~~~~~~~~~~~~vi~~GGI 280 (344)
T cd02922 203 DDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTA-PAPIE-VLLEIRKHCPEVFDKIEVYVDGGV 280 (344)
T ss_pred HHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCC-CCHHH-HHHHHHHHHHHhCCCceEEEeCCC
Confidence 456777765433544443345565554444 699999998 432 2221 11111 1111111 01123468988 78
Q ss_pred hHHHHHHHH-HHcCcc
Q 039121 159 CLGFELLSM-IVSEDR 173 (232)
Q Consensus 159 ClG~QlL~~-~~GG~~ 173 (232)
..|..++-. ++|.+.
T Consensus 281 r~G~Dv~kalaLGA~a 296 (344)
T cd02922 281 RRGTDVLKALCLGAKA 296 (344)
T ss_pred CCHHHHHHHHHcCCCE
Confidence 899998855 456653
No 362
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=27.17 E-value=1.2e+02 Score=26.61 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=31.2
Q ss_pred CCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCccccc
Q 039121 116 LVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNIL 176 (232)
Q Consensus 116 ~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~il 176 (232)
.+|++++.==.+ | . +..+.+.. .+|+.|||.---..+...|-+..++
T Consensus 69 GvdaiiIaCf~D--P-----g---l~~~Re~~----~~PviGi~eAsv~~A~~vgrrfsVi 115 (230)
T COG4126 69 GVDAIIIACFSD--P-----G---LAAARERA----AIPVIGICEASVLAALFVGRRFSVI 115 (230)
T ss_pred CCcEEEEEecCC--h-----H---HHHHHHHh----CCCceehhHHHHHHHHHhcceEEEE
Confidence 689999873222 2 1 22222222 4999999999999999888875443
No 363
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=27.14 E-value=3.6e+02 Score=25.60 Aligned_cols=77 Identities=9% Similarity=0.069 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEee
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILG 157 (232)
+.-+++.+.+-|.+.|..|+++.... +.+++.+.+..++|+++- .|......+......+...+..+...+..=++|
T Consensus 260 T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvG-sPT~~~~~~p~i~~~l~~v~~~~~~~k~~~vfg 337 (388)
T COG0426 260 TEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVG-SPTINGGAHPPIQTALGYVLALAPKNKLAGVFG 337 (388)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEe-cCcccCCCCchHHHHHHHHHhccCcCceEEEEe
Confidence 44566777778899999998887543 566777777789999883 333211122234444544444333333334444
No 364
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=26.89 E-value=4e+02 Score=24.13 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhc-CCCEEEECCCCC--CCc-cChhHHHHHHHHHHHhcCCCCCccEe---e
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLE-LVNGILYTGGWA--KSG-LYYDIVEKIFKKILEKNDAGDHFPVY---A 157 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~-~~dGlIl~GG~~--~~~-~~~~~~~~~~~~~l~~~~~~~~~PIL---G 157 (232)
..+++.+++.|..++..-. +.++.....+ .+|+||+-|... ... .. .....++..+.+.- ++||+ |
T Consensus 126 ~~~i~~l~~~gi~v~~~v~--s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~-~~~~~L~~~v~~~~----~iPViaAGG 198 (330)
T PF03060_consen 126 PEVIERLHAAGIKVIPQVT--SVREARKAAKAGADAIVAQGPEAGGHRGFEV-GSTFSLLPQVRDAV----DIPVIAAGG 198 (330)
T ss_dssp HHHHHHHHHTT-EEEEEES--SHHHHHHHHHTT-SEEEEE-TTSSEE---SS-G-HHHHHHHHHHH-----SS-EEEESS
T ss_pred HHHHHHHHHcCCccccccC--CHHHHHHhhhcCCCEEEEeccccCCCCCccc-cceeeHHHHHhhhc----CCcEEEecC
Confidence 4667789999987766543 4444443333 699999998543 112 11 12334444444432 39998 8
Q ss_pred hhHHHHHHHHH-HcC
Q 039121 158 ICLGFELLSMI-VSE 171 (232)
Q Consensus 158 IClG~QlL~~~-~GG 171 (232)
|+-|-++-+.. +|.
T Consensus 199 I~dg~~iaaal~lGA 213 (330)
T PF03060_consen 199 IADGRGIAAALALGA 213 (330)
T ss_dssp --SHHHHHHHHHCT-
T ss_pred cCCHHHHHHHHHcCC
Confidence 99999987664 343
No 365
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.82 E-value=32 Score=26.57 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=16.5
Q ss_pred ccccCCCCCCCCCCCCEE
Q 039121 43 FCAHCPAPDPSLNYRPVI 60 (232)
Q Consensus 43 ~~~~~~~~~~~~~~~PvI 60 (232)
+|++|++++=.||..|+|
T Consensus 11 ~Cp~CG~kFYDLnk~Piv 28 (108)
T PF09538_consen 11 TCPSCGAKFYDLNKDPIV 28 (108)
T ss_pred cCCCCcchhccCCCCCcc
Confidence 589999999999999976
No 366
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=26.08 E-value=1.4e+02 Score=27.64 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=27.7
Q ss_pred ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 106 PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 106 ~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.++.+++ ++.+|-||+..|+-...-.-.-.-.-+..++.+. .-|+.+||.
T Consensus 180 ~~eaveA-I~~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~~----~ap~i~v~n 229 (323)
T COG0391 180 APEAVEA-IKEADLIVIGPGSLFTSILPILLLPGIAEALRET----VAPIVYVCN 229 (323)
T ss_pred CHHHHHH-HHhCCEEEEcCCccHhhhchhhchhHHHHHHHhC----CCCEEEecc
Confidence 3454554 6789999998887532211111112233333332 689999994
No 367
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=25.91 E-value=65 Score=30.03 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=34.2
Q ss_pred HHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeeh
Q 039121 87 YVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAI 158 (232)
Q Consensus 87 ~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGI 158 (232)
.++.+..+|.+..++. .+.+.+.+..+|.||=-||.+. +...+.. ++ .+.+||+||
T Consensus 80 ~~~~l~k~giesklv~----R~~lsq~i~waD~VisvGGDGT---fL~Aasr----v~-----~~~~PViGv 135 (395)
T KOG4180|consen 80 CQEELSKAGIESKLVS----RNDLSQPIRWADMVISVGGDGT---FLLAASR----VI-----DDSKPVIGV 135 (395)
T ss_pred HHHHHhhCCcceeeee----hhhccCcCchhhEEEEecCccc---eeehhhh----hh-----ccCCceeee
Confidence 4455667888776653 3344445778999998888761 2111111 22 346999998
No 368
>PRK09701 D-allose transporter subunit; Provisional
Probab=25.84 E-value=4.5e+02 Score=22.93 Aligned_cols=60 Identities=8% Similarity=-0.050 Sum_probs=34.4
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEe--CCCChH----HHHHhh-cCCCEEEECCC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLI--FNEPEE----ILFEKL-ELVNGILYTGG 125 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~--~~~~~e----~l~~~l-~~~dGlIl~GG 125 (232)
-.||+....... .....+.....+.+++.|..+..+. ...+.+ .++..+ .++||+|+.+.
T Consensus 25 ~~Igvi~~~~~~--------~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 25 AEYAVVLKTLSN--------PFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred CeEEEEeCCCCC--------HHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 367777642211 1234455667778888898887663 222221 133333 36999999864
No 369
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=25.77 E-value=4.2e+02 Score=24.84 Aligned_cols=85 Identities=12% Similarity=0.119 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhc-CCCEEEECC-CCCCCccChhHHHHHHHHHHHhcCCCCCccEe---ehhH
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLE-LVNGILYTG-GWAKSGLYYDIVEKIFKKILEKNDAGDHFPVY---AICL 160 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~-~~dGlIl~G-G~~~~~~~~~~~~~~~~~~l~~~~~~~~~PIL---GICl 160 (232)
.-++||++.---++++--..+.++.....+ .+|+|+++| |.-. ..+.....+.+..+.+. .+.++||+ ||..
T Consensus 214 ~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq-ld~~~~t~~~L~ei~~a--v~~~~~vi~dGGIr~ 290 (367)
T PLN02493 214 KDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ-LDYVPATISALEEVVKA--TQGRIPVFLDGGVRR 290 (367)
T ss_pred HHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCC-CCCchhHHHHHHHHHHH--hCCCCeEEEeCCcCc
Confidence 446788775333444443345555544333 799999999 4321 11211122223222221 23458887 8999
Q ss_pred HHHHHHH-HHcCcc
Q 039121 161 GFELLSM-IVSEDR 173 (232)
Q Consensus 161 G~QlL~~-~~GG~~ 173 (232)
|..++-- ++|.+-
T Consensus 291 G~Dv~KALALGA~a 304 (367)
T PLN02493 291 GTDVFKALALGASG 304 (367)
T ss_pred HHHHHHHHHcCCCE
Confidence 9998854 566663
No 370
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=25.76 E-value=5.8e+02 Score=24.21 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=12.5
Q ss_pred hhcCCCEEEECCCCCC
Q 039121 113 KLELVNGILYTGGWAK 128 (232)
Q Consensus 113 ~l~~~dGlIl~GG~~~ 128 (232)
.+.++|.+|..||...
T Consensus 114 ~l~~aDlvI~gGG~lf 129 (426)
T PRK10017 114 LLSGYDAIIQVGGSFF 129 (426)
T ss_pred HHHhCCEEEECCCCcc
Confidence 3678899999888763
No 371
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=25.73 E-value=1.5e+02 Score=23.69 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCC
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGW 126 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~ 126 (232)
...+++|+.+|..++..+ +.+++++.+....=+.+|||-..
T Consensus 10 ~~Lar~LR~lG~Dt~~~~-~~~D~~il~~A~~e~RillTrd~ 50 (147)
T PF01927_consen 10 GRLARWLRLLGYDTLYSR-DIDDDEILELAREEGRILLTRDR 50 (147)
T ss_pred HHHHHHHHHCCCcEEEeC-CCChHHHHHHhhhCCeEEEECCH
Confidence 468899999999998776 44455555544455889998654
No 372
>PRK09054 phosphogluconate dehydratase; Validated
Probab=25.61 E-value=2.8e+02 Score=27.88 Aligned_cols=43 Identities=23% Similarity=0.145 Sum_probs=28.6
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEE
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPL 101 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i 101 (232)
..||.|||.+...+...++ +...-+..-+.+.++++|+.+...
T Consensus 63 ~~kP~IgIvns~nd~~p~h----~~l~~~~~~vk~~v~~aGg~~~~~ 105 (603)
T PRK09054 63 MTRPNIGIVTAYNDMLSAH----QPYEHYPDIIKEAAREAGAVAQVA 105 (603)
T ss_pred cCCCEEEEEeccccCcCcc----ccHHHHHHHHHHHHHHcCCcccee
Confidence 4799999999887654321 222234555666788899877654
No 373
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=25.51 E-value=3.2e+02 Score=26.83 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=43.9
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC---ChHHHHHhhcCCCEEEECCCCCCCccC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE---PEEILFEKLELVNGILYTGGWAKSGLY 132 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~---~~e~l~~~l~~~dGlIl~GG~~~~~~~ 132 (232)
.+|+||+++..+... . .. ...+++.|+ .+..+..+.... ..+.+.+.++.+|.+|+.|-.. .+
T Consensus 182 ~~~~V~~l~ghGE~~-----~---~~--~~~l~~~L~-~~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI~~P~~---~l 247 (552)
T TIGR03521 182 REKRIAVLKGNGELA-----D---LQ--IADLVSTLK-EYYFIAPFTLDSVAANPAKTLADLKKFDLIVIAKPTE---AF 247 (552)
T ss_pred cCceEEEEeCCCCCC-----h---HH--HHHHHHHHH-hcCceeeecchhcccCcccccccccCcCEEEEeCCCc---cC
Confidence 479999999875421 1 10 135556676 667776665421 1122333345799999987542 13
Q ss_pred hhHHHHHHHHHHHh
Q 039121 133 YDIVEKIFKKILEK 146 (232)
Q Consensus 133 ~~~~~~~~~~~l~~ 146 (232)
...+...++..+++
T Consensus 248 s~~e~~~Ldqfl~~ 261 (552)
T TIGR03521 248 SEREKYILDQYIMN 261 (552)
T ss_pred CHHHHHHHHHHHHc
Confidence 34455566666654
No 374
>PRK08005 epimerase; Validated
Probab=25.33 E-value=1.6e+02 Score=25.39 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCeE-EEEeCCCChHHHHHhhcCCCEEEECC
Q 039121 85 ASYVKFAESGGARV-IPLIFNEPEEILFEKLELVNGILYTG 124 (232)
Q Consensus 85 ~s~v~~l~~~G~~v-v~i~~~~~~e~l~~~l~~~dGlIl~G 124 (232)
....+.+++.|.++ +.+....+.+.++.+++.+|.|++..
T Consensus 96 ~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMs 136 (210)
T PRK08005 96 SEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMT 136 (210)
T ss_pred HHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEE
Confidence 35678899999887 55555667788888889999998843
No 375
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=25.28 E-value=3.5e+02 Score=27.39 Aligned_cols=61 Identities=18% Similarity=0.061 Sum_probs=38.0
Q ss_pred ccccccCCCCCCCCCCCCEEEEeCCCCC-----CC---CCCcCCccchhhhHHHHHHHHHhCCCeEEEEe
Q 039121 41 TTFCAHCPAPDPSLNYRPVIGILSHPGD-----GA---SGRLSNATNASYISASYVKFAESGGARVIPLI 102 (232)
Q Consensus 41 ~~~~~~~~~~~~~~~~~PvIGI~~~~~~-----~~---~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~ 102 (232)
+|-.+++.-++..+ .||.|||.....+ .. .+.......-.-+.+...+-++++|+.+..+.
T Consensus 40 ~~~~~a~G~~d~dl-~kP~I~I~ns~~~~~~~~~~~~~l~~~pgh~hl~~l~~~vk~gi~~aGg~P~ef~ 108 (640)
T TIGR03432 40 LTQNAGMGWDPARL-LGKEFLILSTHGGLRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRDGAVPFAGF 108 (640)
T ss_pred ccccccCCCCHHHh-CCCEEEEEeCCcccccccccccccCcCCCcccHHHHHHHHHHHHHHcCceeEEeC
Confidence 44456666666666 5999999988763 11 00001112334466677778899999877664
No 376
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=25.24 E-value=28 Score=28.48 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=26.7
Q ss_pred CCEEEECCCCCCCc--cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHc
Q 039121 117 VNGILYTGGWAKSG--LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVS 170 (232)
Q Consensus 117 ~dGlIl~GG~~~~~--~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~G 170 (232)
+|.||+-||=+.+. --.+..+++++.... +.|.||| ||-|.+-.|
T Consensus 81 ~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~-------~~iiGiC--Fms~F~kag 127 (147)
T PF09897_consen 81 PDVVVLMGGLAMPKSGVTPEDVNELIKKISP-------KKIIGIC--FMSMFEKAG 127 (147)
T ss_dssp EEEEEEEGGGGSTTTS--HHHHHHHHHHHEE-------EEEEEEE--ETTHHHHTT
T ss_pred CCEEEEEcccccCCCCCCHHHHHHHHHHhCc-------CCEEEEe--hHHHHHHcC
Confidence 89999999977422 112345566665533 3499999 344444333
No 377
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.14 E-value=1.1e+02 Score=26.26 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECC
Q 039121 83 ISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTG 124 (232)
Q Consensus 83 i~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~G 124 (232)
|-+..++.|.++|++++-+. ..++++..+.+..-++|.|=
T Consensus 19 IG~~~v~~La~aGA~ViAva--R~~a~L~sLV~e~p~~I~Pi 58 (245)
T KOG1207|consen 19 IGKEIVLSLAKAGAQVIAVA--RNEANLLSLVKETPSLIIPI 58 (245)
T ss_pred ccHHHHHHHHhcCCEEEEEe--cCHHHHHHHHhhCCcceeee
Confidence 45678889999999998774 45677888777777766653
No 378
>PRK06703 flavodoxin; Provisional
Probab=24.89 E-value=3.4e+02 Score=21.17 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=29.1
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEE
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILY 122 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl 122 (232)
.+..++..+.+.++..|..+.+....... . ..+...|.|+|
T Consensus 14 nT~~iA~~ia~~l~~~g~~v~~~~~~~~~--~-~~l~~~d~vii 54 (151)
T PRK06703 14 NTEDIADLIKVSLDAFDHEVVLQEMDGMD--A-EELLAYDGIIL 54 (151)
T ss_pred hHHHHHHHHHHHHHhcCCceEEEehhhCC--H-HHHhcCCcEEE
Confidence 57788889999999999887776543321 1 12567899888
No 379
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.79 E-value=51 Score=29.35 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=22.5
Q ss_pred cCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 115 ELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 115 ~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
+.+|.+|.-||.+ ... ...+.+. ..++||+||-.|
T Consensus 32 ~~~D~vi~iGGDG---T~L----~a~~~~~-----~~~iPilGIN~G 66 (259)
T PRK00561 32 DGADYLFVLGGDG---FFV----STAANYN-----CAGCKVVGINTG 66 (259)
T ss_pred CCCCEEEEECCcH---HHH----HHHHHhc-----CCCCcEEEEecC
Confidence 3589999999976 111 1122221 346999999877
No 380
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=24.64 E-value=1.4e+02 Score=29.73 Aligned_cols=68 Identities=12% Similarity=0.267 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFEL 164 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Ql 164 (232)
.|+++++.+.|.+|..|.+.....+ ...+ .. ..|.+.....++.+.+. .-.+++-++|.|.|=-+
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~-~r~~------------~l-dDYv~~i~~Ald~V~~~-tG~~~vnl~GyC~GGtl 301 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKA-HREW------------GL-STYVDALKEAVDAVRAI-TGSRDLNLLGACAGGLT 301 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChh-hcCC------------CH-HHHHHHHHHHHHHHHHh-cCCCCeeEEEECcchHH
Confidence 7999999999999999886432211 0000 00 12332233334443322 23567899999999888
Q ss_pred HHH
Q 039121 165 LSM 167 (232)
Q Consensus 165 L~~ 167 (232)
++.
T Consensus 302 ~a~ 304 (560)
T TIGR01839 302 CAA 304 (560)
T ss_pred HHH
Confidence 886
No 381
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=24.32 E-value=2.1e+02 Score=21.79 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHh
Q 039121 83 ISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEK 146 (232)
Q Consensus 83 i~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~ 146 (232)
++....+.+++.|.+++.+..+.+. .....+.+|.+++-|+......| -....+++.+.+.
T Consensus 13 ia~r~~ra~r~~Gi~tv~v~s~~d~--~s~~~~~ad~~~~~~~~~~~~~y-l~~e~I~~ia~~~ 73 (110)
T PF00289_consen 13 IAVRIIRALRELGIETVAVNSNPDT--VSTHVDMADEAYFEPPGPSPESY-LNIEAIIDIARKE 73 (110)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEGGGT--TGHHHHHSSEEEEEESSSGGGTT-TSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCcceeccCchhc--ccccccccccceecCcchhhhhh-ccHHHHhhHhhhh
Confidence 4678889999999999988764432 22234578888777633322233 3444555555543
No 382
>PRK13057 putative lipid kinase; Reviewed
Probab=24.08 E-value=3e+02 Score=24.17 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCh--HHH-HHhhcCCCEEEECCCCC
Q 039121 84 SASYVKFAESGGARVIPLIFNEPE--EIL-FEKLELVNGILYTGGWA 127 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~--e~l-~~~l~~~dGlIl~GG~~ 127 (232)
...+.+.+++.|..+......... +++ ++..+.+|.||+.||.+
T Consensus 15 ~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDG 61 (287)
T PRK13057 15 LAAARAALEAAGLELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDG 61 (287)
T ss_pred HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHcCCCEEEEECchH
Confidence 346778899999887665432221 122 22234678999999875
No 383
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=23.88 E-value=76 Score=28.62 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=29.8
Q ss_pred CC-EEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 117 VN-GILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 117 ~d-GlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
++ +|+|+||...-+ ..++.++..+.....-..-|...+++|..++...
T Consensus 275 i~~~IvL~GG~s~ip----gi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~ 323 (336)
T PRK13928 275 IDRGIIMTGGGALLH----GLDKLLAEETKVPVYIAEDPISCVALGTGKMLEN 323 (336)
T ss_pred cCCCEEEECcccchh----hHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhc
Confidence 44 899999987323 2344455444332222235888899999888654
No 384
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.88 E-value=4.7e+02 Score=22.52 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCeEEE-EeCCCChHHHHHhhc-CCCEEEE
Q 039121 86 SYVKFAESGGARVIP-LIFNEPEEILFEKLE-LVNGILY 122 (232)
Q Consensus 86 s~v~~l~~~G~~vv~-i~~~~~~e~l~~~l~-~~dGlIl 122 (232)
.+.+.+++.|..+++ +..+.+.+.++...+ ..+-|++
T Consensus 120 ~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~ 158 (242)
T cd04724 120 EFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYY 158 (242)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEE
Confidence 566777888876665 444455666666666 4565665
No 385
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=23.76 E-value=3.9e+02 Score=21.54 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCeEEEEeCCC-ChHHHHHhhc-------CCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEee
Q 039121 86 SYVKFAESGGARVIPLIFNE-PEEILFEKLE-------LVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~-------~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILG 157 (232)
..++.+++.|+++..+..+. +++++.+.++ .++|||-..|...+....+...+.++..+..+
T Consensus 43 ~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~K---------- 112 (181)
T PF08659_consen 43 AAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPK---------- 112 (181)
T ss_dssp HHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHH----------
T ss_pred HHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhh----------
Confidence 46667899999998887764 3455554442 46899998887533333333334555555543
Q ss_pred hhHHHHHHHHHHcC
Q 039121 158 ICLGFELLSMIVSE 171 (232)
Q Consensus 158 IClG~QlL~~~~GG 171 (232)
..|.+.|..++..
T Consensus 113 -v~g~~~L~~~~~~ 125 (181)
T PF08659_consen 113 -VRGLWNLHEALEN 125 (181)
T ss_dssp -HHHHHHHHHHHTT
T ss_pred -hhHHHHHHHHhhc
Confidence 6777777777654
No 386
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=23.72 E-value=1.3e+02 Score=26.46 Aligned_cols=78 Identities=12% Similarity=-0.006 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCCeEEEEeCC----CChHHHH---HhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEee
Q 039121 85 ASYVKFAESGGARVIPLIFN----EPEEILF---EKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYA 157 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~----~~~e~l~---~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILG 157 (232)
..+.+.|++.|++++.+|.- .+...+. +.++.+|.|||+-..++ +.+++ .+. ...-.+.|++.
T Consensus 31 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NAV--------~~~~~-~~~-~~~~~~~~~~A 100 (266)
T PRK08811 31 APLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAV--------RAAHR-LLP-LQRPARAHWLS 100 (266)
T ss_pred HHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHHH--------HHHHH-Hhc-ccCccCCeEEE
Confidence 46778899999999887751 1111111 23458899999964432 11111 111 01123467777
Q ss_pred hhHHHHHHHHHHcCc
Q 039121 158 ICLGFELLSMIVSED 172 (232)
Q Consensus 158 IClG~QlL~~~~GG~ 172 (232)
|-.+=.--....|-.
T Consensus 101 VG~~TA~aL~~~G~~ 115 (266)
T PRK08811 101 VGEGTARALQACGID 115 (266)
T ss_pred ECHHHHHHHHHcCCC
Confidence 766655554445543
No 387
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=23.43 E-value=92 Score=27.81 Aligned_cols=46 Identities=20% Similarity=0.097 Sum_probs=27.3
Q ss_pred EEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 119 GILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 119 GlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+|+|+||...-+. .++.++..+.....-..-|...+++|.-+++..
T Consensus 283 ~IvL~GG~s~ipg----~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 283 GIVLTGGGALLRG----LDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred CEEEECchhcchh----HHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 6999999874332 333444433322112235888899998877643
No 388
>PRK13337 putative lipid kinase; Reviewed
Probab=23.36 E-value=5.2e+02 Score=22.83 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCeEEEEeCC--CChHHHH-Hhh-cCCCEEEECCCCC
Q 039121 85 ASYVKFAESGGARVIPLIFN--EPEEILF-EKL-ELVNGILYTGGWA 127 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~--~~~e~l~-~~l-~~~dGlIl~GG~~ 127 (232)
....+.+++.|..+.++... .+.+++. +.. +..|.||+.||.+
T Consensus 22 ~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDG 68 (304)
T PRK13337 22 PDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDG 68 (304)
T ss_pred HHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCC
Confidence 35677889999876554432 2222222 221 3578999999876
No 389
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.85 E-value=2.6e+02 Score=20.84 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCCChHHHH---HhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeeh
Q 039121 82 YISASYVKFAESGGARVIPLIFNEPEEILF---EKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAI 158 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~---~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGI 158 (232)
+++..+...+...|..+..+.. .+... ..++.=|-+|+-.-+... .+..+.++.+.++ +.|+++|
T Consensus 13 ~~a~~~~~~l~~~g~~~~~~~~---~~~~~~~~~~~~~~d~vi~iS~sG~t----~~~~~~~~~a~~~-----g~~vi~i 80 (128)
T cd05014 13 HIARKIAATLSSTGTPAFFLHP---TEALHGDLGMVTPGDVVIAISNSGET----DELLNLLPHLKRR-----GAPIIAI 80 (128)
T ss_pred HHHHHHHHHhhcCCCceEEccc---chhhccccCcCCCCCEEEEEeCCCCC----HHHHHHHHHHHHC-----CCeEEEE
Confidence 3444444556777876665421 11111 123344677666533322 2444566666554 5999998
Q ss_pred h
Q 039121 159 C 159 (232)
Q Consensus 159 C 159 (232)
+
T Consensus 81 T 81 (128)
T cd05014 81 T 81 (128)
T ss_pred e
Confidence 7
No 390
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=22.57 E-value=1.1e+02 Score=25.46 Aligned_cols=42 Identities=24% Similarity=0.172 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCeEEEEeCCC-----ChHHHHHhh---c--CCCEEEECCCCC
Q 039121 86 SYVKFAESGGARVIPLIFNE-----PEEILFEKL---E--LVNGILYTGGWA 127 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~-----~~e~l~~~l---~--~~dGlIl~GG~~ 127 (232)
.+.+.+++.|++++.+|.-. +.+.++..+ . .+|+|||+-..+
T Consensus 2 ~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~a 53 (231)
T PF02602_consen 2 ELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNA 53 (231)
T ss_dssp HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHH
T ss_pred HHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHH
Confidence 35678999999998887532 122233333 3 899999996544
No 391
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=22.52 E-value=3.1e+02 Score=23.05 Aligned_cols=42 Identities=29% Similarity=0.309 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTG 124 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~G 124 (232)
...+...+.+.+++.|..+.+...... ......++||+|+.+
T Consensus 19 ~~~~~~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~vdgii~~~ 60 (270)
T cd01544 19 YLSIRLGIEKRAQELGIELTKFFRDDD---LLEILEDVDGIIAIG 60 (270)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccch---hHHhccCcCEEEEec
Confidence 344556777888889998877654221 222346899999875
No 392
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=22.35 E-value=3.2e+02 Score=21.70 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=51.8
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHH-HHHHhCCCeEEEEeC-------CCChHHHHHhhcCCCEEEECCCCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYV-KFAESGGARVIPLIF-------NEPEEILFEKLELVNGILYTGGWAK 128 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v-~~l~~~G~~vv~i~~-------~~~~e~l~~~l~~~dGlIl~GG~~~ 128 (232)
+-+|+|++.|.. -...|+++.-. +.-++.|..+.+--. ..+.++ +..+|+||+.-.-.+
T Consensus 2 ~~IVAVTACPtG---------IAHTyMAAeaLe~~A~~~g~~IKVETqGs~G~eN~LT~ed----I~~Ad~VI~AaD~~i 68 (122)
T COG1445 2 KKIVAVTACPTG---------IAHTYMAAEALEKAAKKLGVEIKVETQGAVGIENRLTAED----IAAADVVILAADIEV 68 (122)
T ss_pred ccEEEEecCCch---------HHHHHHHHHHHHHHHHHcCCeEEEEcCCcccccCcCCHHH----HHhCCEEEEEecccc
Confidence 468999999864 24678877644 445667877655321 123333 568999999854433
Q ss_pred CccChhHHHHHHHHHHHhcCCCCCccE------eehhHHHHHHHHHHcCc
Q 039121 129 SGLYYDIVEKIFKKILEKNDAGDHFPV------YAICLGFELLSMIVSED 172 (232)
Q Consensus 129 ~~~~~~~~~~~~~~~l~~~~~~~~~PI------LGIClG~QlL~~~~GG~ 172 (232)
+.. +.+ +++|+ .+|+..-|+|..++.+.
T Consensus 69 ~~~------~ff----------~gk~vi~~~~~~aik~~~~li~~a~~~~ 102 (122)
T COG1445 69 DLS------RFF----------AGKPVIEVSTKDAIKNPAQLISKALAEA 102 (122)
T ss_pred cHh------Hhh----------cCCeEEEecHHHHHhCHHHHHHHHHhcc
Confidence 221 000 01333 25777888888887654
No 393
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=22.33 E-value=5.2e+02 Score=23.15 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCC--hHHH-HHhh-cCCCEEEECCCCC
Q 039121 84 SASYVKFAESGGARVIPLIFNEP--EEIL-FEKL-ELVNGILYTGGWA 127 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~--~e~l-~~~l-~~~dGlIl~GG~~ 127 (232)
.+...+.|++.|.+......... ..++ ++.. +.+|.||..||.+
T Consensus 22 ~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDG 69 (301)
T COG1597 22 LREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDG 69 (301)
T ss_pred HHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcc
Confidence 45778889999998876665433 2222 2222 2689999999876
No 394
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=22.27 E-value=2e+02 Score=24.10 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEEC
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYT 123 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~ 123 (232)
+.-|++-++.-|++.|.++.+.+...-.+ -.++.+|.||+-
T Consensus 14 T~kIA~~iA~~L~e~g~qvdi~dl~~~~~---~~l~~ydavVIg 54 (175)
T COG4635 14 TRKIAEYIASHLRESGIQVDIQDLHAVEE---PALEDYDAVVIG 54 (175)
T ss_pred HHHHHHHHHHHhhhcCCeeeeeehhhhhc---cChhhCceEEEe
Confidence 45577777778999999998876533211 136789999985
No 395
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=22.26 E-value=1.7e+02 Score=26.23 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=26.8
Q ss_pred CCCEEEECCCCCCCccChhHHH-HHHHHHHHhcCCCCCccEe-ehhHH
Q 039121 116 LVNGILYTGGWAKSGLYYDIVE-KIFKKILEKNDAGDHFPVY-AICLG 161 (232)
Q Consensus 116 ~~dGlIl~GG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~PIL-GIClG 161 (232)
.+|||++.|..+.-.....++| ++++.+.+. ...++||+ ||+..
T Consensus 41 Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~--~~~~~pvi~gv~~~ 86 (303)
T PRK03620 41 GAAALFAAGGTGEFFSLTPDEYSQVVRAAVET--TAGRVPVIAGAGGG 86 (303)
T ss_pred CCCEEEECcCCcCcccCCHHHHHHHHHHHHHH--hCCCCcEEEecCCC
Confidence 5899999996553233333343 566666654 24468886 77643
No 396
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=22.08 E-value=1.8e+02 Score=23.66 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCeEEEEeCCCC
Q 039121 86 SYVKFAESGGARVIPLIFNEP 106 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~ 106 (232)
.+.++|.+.|.+++++.....
T Consensus 34 ~V~kyL~~~GY~ViPVNP~~~ 54 (140)
T COG1832 34 RVAKYLQQKGYRVIPVNPKLA 54 (140)
T ss_pred HHHHHHHHCCCEEEeeCcccc
Confidence 556789999999999876433
No 397
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=22.07 E-value=3.6e+02 Score=20.51 Aligned_cols=66 Identities=6% Similarity=0.005 Sum_probs=36.2
Q ss_pred HHHHHHHHh-CCCeEEEEeC--CCChHHHHHhhc--CCCEEEECCCC-CCCccChhHHHHHHHHHHHhcCCCCCccEe
Q 039121 85 ASYVKFAES-GGARVIPLIF--NEPEEILFEKLE--LVNGILYTGGW-AKSGLYYDIVEKIFKKILEKNDAGDHFPVY 156 (232)
Q Consensus 85 ~s~v~~l~~-~G~~vv~i~~--~~~~e~l~~~l~--~~dGlIl~GG~-~~~~~~~~~~~~~~~~~l~~~~~~~~~PIL 156 (232)
..-.++|++ .|..+..+.. .....++.+.+. ++|.||.+..+ +..+. ......+-+.+++. ++|++
T Consensus 34 ~gTa~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~~~-~~dg~~iRr~a~~~-----~Ip~~ 105 (115)
T cd01422 34 GTTGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQPH-EPDVKALLRLCDVY-----NIPLA 105 (115)
T ss_pred chHHHHHHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCCCCCcc-cccHHHHHHHHHHc-----CCCEE
Confidence 345667888 7887766643 222233433333 68999999765 32221 12233444445554 48876
No 398
>PRK06696 uridine kinase; Validated
Probab=21.96 E-value=2e+02 Score=24.22 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=28.7
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEe
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLI 102 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~ 102 (232)
...+|||.+.++. +++.+++.+++.+...|..++.++
T Consensus 21 ~~~iI~I~G~sgs----------GKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 21 RPLRVAIDGITAS----------GKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred CceEEEEECCCCC----------CHHHHHHHHHHHHHHcCCeEEEec
Confidence 3568999998764 467888999999988887776655
No 399
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=21.81 E-value=2.3e+02 Score=26.14 Aligned_cols=41 Identities=29% Similarity=0.368 Sum_probs=29.3
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE 105 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~ 105 (232)
.+-++||||.-|+.+ +|-+-..+.+.+.+.|.+|-++-.+.
T Consensus 49 G~a~viGITG~PGaG----------KSTli~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 49 GNAHVIGITGVPGAG----------KSTLIEALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred CCCcEEEecCCCCCc----------hHHHHHHHHHHHHHCCcEEEEEEECC
Confidence 445799999999864 33344567777888999887776543
No 400
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=21.33 E-value=3.7e+02 Score=29.75 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF 103 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~ 103 (232)
.+|+|||+....... . ...++ ..+++.||+.|..|+++..
T Consensus 315 ~~p~Vgil~yrs~~~------~-~~~~i-dalI~~LE~~G~~vipvf~ 354 (1353)
T PLN03241 315 DAPRVAILLYRKHVI------T-KQPYL-ADLVRQMEESGVLPVPIFI 354 (1353)
T ss_pred CCCEEEEEecchhhh------c-CChHH-HHHHHHHHHCCCeEEEEEe
Confidence 479999998754321 1 23454 3678899999999998854
No 401
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=21.31 E-value=2.8e+02 Score=25.87 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHh-------------------------hcCC----CEEEECCCCCC
Q 039121 81 SYISASYVKFAESGGARVIPLIFNEPEEILFEK-------------------------LELV----NGILYTGGWAK 128 (232)
Q Consensus 81 ~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~-------------------------l~~~----dGlIl~GG~~~ 128 (232)
++|+. -++.-.+.||.++-+.|..+.+...+. .+.+ -.||+.||+..
T Consensus 217 d~Ia~-AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~ 292 (348)
T PRK09250 217 DLTGQ-ANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASK 292 (348)
T ss_pred HHHHH-HHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCC
Confidence 45532 345556789999999987655544443 4443 57999999985
No 402
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.24 E-value=3.7e+02 Score=20.37 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=36.7
Q ss_pred HHHHHhCCCeEEEEeCCCChHHHHHhh--cCCCEEEECCCCCCCccChhHHHHHHHHHHHh
Q 039121 88 VKFAESGGARVIPLIFNEPEEILFEKL--ELVNGILYTGGWAKSGLYYDIVEKIFKKILEK 146 (232)
Q Consensus 88 v~~l~~~G~~vv~i~~~~~~e~l~~~l--~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~ 146 (232)
..+++..|.+++.+-.+.+.+++.+.. .++|.|.+++-.. .+....+++++...+.
T Consensus 20 ~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~---~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 20 ARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSG---GHMTLFPEVIELLREL 77 (122)
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccch---hhHHHHHHHHHHHHhc
Confidence 357899999999887766666654433 2689999987543 2334455666655443
No 403
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=20.99 E-value=66 Score=29.15 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=28.1
Q ss_pred CC-EEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHH
Q 039121 117 VN-GILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSM 167 (232)
Q Consensus 117 ~d-GlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~ 167 (232)
++ ||||+||...-+ ...+.++..+.....-..-|...+++|...+..
T Consensus 278 ~~~gIvLtGG~s~lp----gl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~~ 325 (335)
T PRK13929 278 VDRGVILTGGGALLN----GIKEWLSEEIVVPVHVAANPLESVAIGTGRSLE 325 (335)
T ss_pred cCCCEEEEchhhhhh----hHHHHHHHHHCCCceeCCCHHHHHHHHHHHHHH
Confidence 45 899999987322 233444444432222224688889999887754
No 404
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.99 E-value=3.1e+02 Score=23.38 Aligned_cols=89 Identities=12% Similarity=0.189 Sum_probs=50.7
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC--hHHHHHhhcCCCEEEECCCCCCCccC
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP--EEILFEKLELVNGILYTGGWAKSGLY 132 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~--~e~l~~~l~~~dGlIl~GG~~~~~~~ 132 (232)
...|+|.|+-.... . -....++.+.+.|.+.+-+.++.+ .+.++++-++++.+++--|.-.+...
T Consensus 2 ~~~~vv~Vir~~~~-----------~--~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~ 68 (201)
T PRK06015 2 KLQPVIPVLLIDDV-----------E--HAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQ 68 (201)
T ss_pred CCCCEEEEEEcCCH-----------H--HHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHH
Confidence 34678888765421 1 134678889999999998887643 23344433445665554465433221
Q ss_pred hhH--------------HHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 133 YDI--------------VEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 133 ~~~--------------~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
.+. ..++++.+.+. ++|++==|.=
T Consensus 69 a~~ai~aGA~FivSP~~~~~vi~~a~~~-----~i~~iPG~~T 106 (201)
T PRK06015 69 FEDAAKAGSRFIVSPGTTQELLAAANDS-----DVPLLPGAAT 106 (201)
T ss_pred HHHHHHcCCCEEECCCCCHHHHHHHHHc-----CCCEeCCCCC
Confidence 111 34566766655 4777644433
No 405
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=20.97 E-value=3e+02 Score=26.78 Aligned_cols=41 Identities=5% Similarity=-0.097 Sum_probs=24.6
Q ss_pred HHHHHHHh---CCCeEEEEeCCCChHHHHHhhcC------CCEEEECCCC
Q 039121 86 SYVKFAES---GGARVIPLIFNEPEEILFEKLEL------VNGILYTGGW 126 (232)
Q Consensus 86 s~v~~l~~---~G~~vv~i~~~~~~e~l~~~l~~------~dGlIl~GG~ 126 (232)
.+++.|.. ..++++..+.-.+.+.+.+.++. +||||+.=..
T Consensus 27 ~i~~~l~~~~~~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~T 76 (484)
T cd03557 27 EIVDGLNASGKLPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHT 76 (484)
T ss_pred HHHHHhcccCCCCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCC
Confidence 34555555 23566655555566666555543 8999987443
No 406
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=20.68 E-value=5.9e+02 Score=22.49 Aligned_cols=62 Identities=13% Similarity=-0.053 Sum_probs=33.4
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCC-CeEEEEeCCCChH----HHHHhhc-CCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGG-ARVIPLIFNEPEE----ILFEKLE-LVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G-~~vv~i~~~~~~e----~l~~~l~-~~dGlIl~GG~ 126 (232)
..+||++...... ....-+...+.+.+++.| ..++......+.+ .++.+.. ++||+|+.+..
T Consensus 24 ~~~Igvv~~~~~~--------~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 91 (330)
T PRK15395 24 DTRIGVTIYKYDD--------NFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVD 91 (330)
T ss_pred CceEEEEEecCcc--------hHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 4678887642111 123334556777788876 4554434322222 2333332 79999998643
No 407
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=20.65 E-value=3.3e+02 Score=20.99 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=37.6
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHH-HHHHhCCCeEEEEeCCCC--hHHH-HHhhcCCCEEEECCCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYV-KFAESGGARVIPLIFNEP--EEIL-FEKLELVNGILYTGGWA 127 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v-~~l~~~G~~vv~i~~~~~--~e~l-~~~l~~~dGlIl~GG~~ 127 (232)
..+++|++.|.. ....|+++... ++-++.|..+.+---... ...+ .+.++.+|.||+-|...
T Consensus 3 mkivaVtacp~G---------iAht~lAAeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~~ 68 (114)
T PRK10427 3 AYLVAVTACVSG---------VAHTYMAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDIE 68 (114)
T ss_pred ceEEEEeeCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCC
Confidence 458999988763 35678877654 456678887763321111 0011 12256899999999543
No 408
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=20.65 E-value=1.4e+02 Score=23.42 Aligned_cols=60 Identities=15% Similarity=0.058 Sum_probs=31.7
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHH
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKI 143 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~ 143 (232)
.+..++..+.+.+.+.+..+.+.....+ ...+..+|.||+-++-. ...+....++.++..
T Consensus 10 ~Tk~~A~~ia~~l~~~~~~v~~~~~~~~----~~~~~~yD~vi~gspiy-~g~~~~~~~~fi~~~ 69 (143)
T PF12724_consen 10 NTKKIAEWIAEKLGEEGELVDLEKVEED----EPDLSDYDAVIFGSPIY-AGRIPGEMREFIKKN 69 (143)
T ss_pred hHHHHHHHHHHHHhhhccEEEHHhhhhc----ccccccCCEEEEEEEEE-CCcCCHHHHHHHHHH
Confidence 4556677777777665443333221111 12367899988865432 233344555666543
No 409
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=20.50 E-value=1.2e+02 Score=25.78 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEE
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVI 99 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv 99 (232)
++.+||+|+.++.+. + .+.+.+++.|+.++
T Consensus 1 ~~~iIglTG~igsGK----------S----tva~~~~~~G~~vi 30 (201)
T COG0237 1 MMLIIGLTGGIGSGK----------S----TVAKILAELGFPVI 30 (201)
T ss_pred CceEEEEecCCCCCH----------H----HHHHHHHHcCCeEE
Confidence 357899999998653 2 44567888777554
No 410
>PLN02979 glycolate oxidase
Probab=20.27 E-value=7.3e+02 Score=23.34 Aligned_cols=86 Identities=12% Similarity=0.103 Sum_probs=45.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhc-CCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEe---ehhHH
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLE-LVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVY---AICLG 161 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~-~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PIL---GIClG 161 (232)
.-++||++.---++++--..+.++.....+ .+|+|+++|...-...+.....+.+..+.+. .+.++||+ ||..|
T Consensus 213 ~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~--~~~~~~Vi~dGGIr~G 290 (366)
T PLN02979 213 KDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKA--TQGRIPVFLDGGVRRG 290 (366)
T ss_pred HHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHH--hCCCCeEEEeCCcCcH
Confidence 457788775333444432345555544443 7999999993321111111112222222211 23458888 89999
Q ss_pred HHHHHH-HHcCcc
Q 039121 162 FELLSM-IVSEDR 173 (232)
Q Consensus 162 ~QlL~~-~~GG~~ 173 (232)
..++-- ++|.+.
T Consensus 291 ~Di~KALALGAda 303 (366)
T PLN02979 291 TDVFKALALGASG 303 (366)
T ss_pred HHHHHHHHcCCCE
Confidence 988744 567663
No 411
>PRK15453 phosphoribulokinase; Provisional
Probab=20.07 E-value=2.3e+02 Score=25.82 Aligned_cols=37 Identities=11% Similarity=0.251 Sum_probs=27.3
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEe
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLI 102 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~ 102 (232)
..|+|||++.++. +++.+++.+.+.+...+..+.++.
T Consensus 4 k~piI~ItG~SGs----------GKTTva~~l~~if~~~~~~~~vi~ 40 (290)
T PRK15453 4 KHPIIAVTGSSGA----------GTTTVKRAFEKIFRRENINAAVVE 40 (290)
T ss_pred CCcEEEEECCCCC----------CHHHHHHHHHHHHhhcCCCeEEEe
Confidence 3589999998764 466778888888877766565554
No 412
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=20.03 E-value=1.8e+02 Score=23.89 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCCC-------hHHHHHhhcCCCEEEECCCCC
Q 039121 85 ASYVKFAESGGARVIPLIFNEP-------EEILFEKLELVNGILYTGGWA 127 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~-------~e~l~~~l~~~dGlIl~GG~~ 127 (232)
..+.+.+++.|+.++.+|.-.. .......+..+|+|||+-..+
T Consensus 11 ~~l~~~L~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iiftS~~a 60 (239)
T cd06578 11 DELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPNA 60 (239)
T ss_pred HHHHHHHHHcCCcEEEeeeEEEecCChHHHHHHHHhcCCCCEEEEECHHH
Confidence 4566789999999988774321 122222344789999996543
Done!