Query 039121
Match_columns 232
No_of_seqs 262 out of 2248
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:37:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9x_A Gamma-glutamyl hydrolas 99.9 1.2E-26 4.2E-31 208.4 12.0 176 47-227 20-197 (315)
2 3fij_A LIN1909 protein; 11172J 99.9 1E-23 3.4E-28 183.7 12.8 154 55-227 2-183 (254)
3 1qdl_B Protein (anthranilate s 99.7 4.3E-17 1.5E-21 136.0 12.1 122 85-227 15-141 (195)
4 2vpi_A GMP synthase; guanine m 99.7 6E-18 2.1E-22 144.3 6.1 134 57-227 24-157 (218)
5 2a9v_A GMP synthase; structura 99.7 1.3E-17 4.4E-22 141.4 7.7 120 84-227 26-146 (212)
6 1i1q_B Anthranilate synthase c 99.7 1.3E-16 4.6E-21 132.6 13.4 123 84-227 13-137 (192)
7 1o1y_A Conserved hypothetical 99.7 4.1E-17 1.4E-21 140.7 9.3 122 86-226 28-154 (239)
8 1wl8_A GMP synthase [glutamine 99.7 2.2E-16 7.5E-21 130.8 12.1 120 84-226 13-132 (189)
9 3m3p_A Glutamine amido transfe 99.7 5.2E-17 1.8E-21 141.5 6.7 124 85-226 18-144 (250)
10 1gpm_A GMP synthetase, XMP ami 99.7 1.1E-16 3.8E-21 152.5 8.7 143 56-227 6-148 (525)
11 3l7n_A Putative uncharacterize 99.7 1.7E-16 5.7E-21 136.4 8.0 124 85-225 15-146 (236)
12 3tqi_A GMP synthase [glutamine 99.6 2.1E-16 7.1E-21 150.7 5.9 142 57-227 10-151 (527)
13 3uow_A GMP synthetase; structu 99.6 1.1E-15 3.8E-20 146.6 8.8 127 84-227 20-176 (556)
14 4gud_A Imidazole glycerol phos 99.6 1.8E-16 6E-21 133.2 2.3 76 85-173 16-93 (211)
15 1a9x_B Carbamoyl phosphate syn 99.6 2.2E-15 7.4E-20 138.5 9.7 82 85-174 202-283 (379)
16 2ywb_A GMP synthase [glutamine 99.6 4E-16 1.4E-20 147.9 4.9 123 80-227 9-131 (503)
17 3d54_D Phosphoribosylformylgly 99.5 6.6E-14 2.3E-18 117.1 12.0 122 57-206 2-132 (213)
18 2w7t_A CTP synthetase, putativ 99.5 2.2E-14 7.6E-19 126.1 9.1 102 58-173 9-117 (273)
19 2ywj_A Glutamine amidotransfer 99.5 7.1E-15 2.4E-19 121.2 4.3 74 86-173 14-89 (186)
20 2ywd_A Glutamine amidotransfer 99.5 6.5E-15 2.2E-19 121.5 3.4 89 56-171 1-93 (191)
21 2vxo_A GMP synthase [glutamine 99.5 8.4E-15 2.9E-19 143.8 4.2 119 86-227 44-162 (697)
22 1ka9_H Imidazole glycerol phos 99.4 7.2E-14 2.5E-18 116.6 6.2 75 85-171 16-97 (200)
23 3r75_A Anthranilate/para-amino 99.4 1.8E-13 6.1E-18 133.3 6.9 80 84-173 459-542 (645)
24 1jvn_A Glutamine, bifunctional 99.4 1.4E-13 4.7E-18 132.0 3.2 88 57-169 4-96 (555)
25 1gpw_B Amidotransferase HISH; 99.4 1.5E-13 5.2E-18 114.5 2.7 73 85-170 14-95 (201)
26 1q7r_A Predicted amidotransfer 99.4 2E-13 6.9E-18 115.8 3.0 96 51-173 17-115 (219)
27 2abw_A PDX2 protein, glutamina 99.3 3.5E-13 1.2E-17 114.6 3.7 92 56-173 2-101 (227)
28 2nv0_A Glutamine amidotransfer 99.3 2.4E-12 8.3E-17 106.7 5.2 76 86-173 15-93 (196)
29 1vco_A CTP synthetase; tetrame 99.3 5.1E-12 1.7E-16 120.9 8.1 107 55-175 298-407 (550)
30 2v4u_A CTP synthase 2; pyrimid 99.2 1.1E-11 3.8E-16 109.7 6.2 98 57-173 25-140 (289)
31 2iss_D Glutamine amidotransfer 99.1 4.1E-11 1.4E-15 100.6 6.0 73 85-172 33-111 (208)
32 1s1m_A CTP synthase; CTP synth 99.1 4.1E-11 1.4E-15 114.6 6.5 99 56-174 288-394 (545)
33 2vdj_A Homoserine O-succinyltr 99.1 3.8E-10 1.3E-14 100.7 11.2 86 114-208 97-187 (301)
34 2h2w_A Homoserine O-succinyltr 99.1 3.9E-10 1.3E-14 101.0 10.0 84 115-208 110-198 (312)
35 3nva_A CTP synthase; rossman f 99.0 1.1E-09 3.7E-14 104.0 10.4 99 57-173 293-400 (535)
36 3ugj_A Phosphoribosylformylgly 98.8 8.4E-09 2.9E-13 107.0 8.6 95 55-168 1045-1152(1303)
37 3l4e_A Uncharacterized peptida 98.5 4.9E-08 1.7E-12 82.3 4.2 99 57-168 27-129 (206)
38 1fy2_A Aspartyl dipeptidase; s 98.4 1.7E-07 6E-12 79.9 4.2 96 56-169 30-130 (229)
39 1oi4_A Hypothetical protein YH 97.8 8.3E-05 2.8E-09 61.1 9.2 96 57-168 23-134 (193)
40 3l18_A Intracellular protease 97.1 0.0011 3.7E-08 52.7 6.9 95 58-168 3-111 (168)
41 4hcj_A THIJ/PFPI domain protei 97.1 0.00088 3E-08 54.7 6.1 97 56-168 7-117 (177)
42 2rk3_A Protein DJ-1; parkinson 97.0 0.00082 2.8E-08 55.0 5.8 96 57-168 3-115 (197)
43 1vhq_A Enhancing lycopene bios 97.0 0.0018 6E-08 54.6 7.2 82 86-172 29-154 (232)
44 2vrn_A Protease I, DR1199; cys 96.9 0.0019 6.5E-08 52.3 7.0 97 56-168 8-124 (190)
45 3efe_A THIJ/PFPI family protei 96.8 0.0066 2.3E-07 50.4 9.3 96 57-168 5-121 (212)
46 2ab0_A YAJL; DJ-1/THIJ superfa 96.6 0.0026 8.8E-08 52.5 5.5 95 58-168 3-116 (205)
47 3ej6_A Catalase-3; heme, hydro 96.5 0.031 1.1E-06 54.6 12.8 97 57-168 537-646 (688)
48 4e08_A DJ-1 beta; flavodoxin-l 96.4 0.0043 1.5E-07 50.3 5.7 97 56-168 4-116 (190)
49 3cne_A Putative protease I; st 96.0 0.0051 1.7E-07 49.1 3.8 49 115-168 65-120 (175)
50 3f5d_A Protein YDEA; unknow pr 96.0 0.0099 3.4E-07 49.4 5.7 95 57-168 3-109 (206)
51 3uk7_A Class I glutamine amido 95.9 0.013 4.5E-07 52.9 6.8 97 56-168 11-137 (396)
52 3en0_A Cyanophycinase; serine 95.9 0.0088 3E-07 52.7 5.5 96 57-167 56-160 (291)
53 3uk7_A Class I glutamine amido 95.9 0.013 4.5E-07 52.9 6.7 98 55-168 203-330 (396)
54 2fex_A Conserved hypothetical 95.9 0.0025 8.6E-08 51.7 1.6 77 87-168 20-110 (188)
55 3l3b_A ES1 family protein; ssg 95.9 0.011 3.6E-07 50.6 5.6 79 86-169 46-168 (242)
56 3ttv_A Catalase HPII; heme ori 95.8 0.017 5.8E-07 57.0 7.4 96 56-168 599-708 (753)
57 3gra_A Transcriptional regulat 95.7 0.015 5.2E-07 47.9 5.8 49 114-168 69-117 (202)
58 2iuf_A Catalase; oxidoreductas 95.5 0.061 2.1E-06 52.6 9.8 99 56-168 528-648 (688)
59 3er6_A Putative transcriptiona 95.3 0.028 9.5E-07 46.5 6.0 50 114-168 72-124 (209)
60 3ot1_A 4-methyl-5(B-hydroxyeth 95.1 0.024 8.1E-07 46.8 5.0 97 56-168 8-121 (208)
61 3fse_A Two-domain protein cont 94.9 0.045 1.5E-06 49.6 6.6 96 57-168 10-121 (365)
62 1sy7_A Catalase 1; heme oxidat 94.9 0.087 3E-06 51.8 9.0 98 57-170 534-646 (715)
63 3kkl_A Probable chaperone prot 94.8 0.052 1.8E-06 46.3 6.4 49 115-168 97-147 (244)
64 3ewn_A THIJ/PFPI family protei 94.4 0.07 2.4E-06 45.7 6.3 96 57-168 23-133 (253)
65 1u9c_A APC35852; structural ge 94.0 0.018 6.3E-07 47.6 1.8 78 86-168 33-138 (224)
66 3noq_A THIJ/PFPI family protei 92.9 0.066 2.3E-06 45.0 3.5 94 58-168 6-113 (231)
67 3mgk_A Intracellular protease/ 92.9 0.046 1.6E-06 45.3 2.4 49 115-168 64-113 (211)
68 1rw7_A YDR533CP; alpha-beta sa 92.6 0.028 9.7E-07 47.5 0.7 48 116-168 98-147 (243)
69 3n7t_A Macrophage binding prot 91.9 0.054 1.9E-06 46.3 1.7 48 116-168 105-154 (247)
70 1n57_A Chaperone HSP31, protei 90.8 0.066 2.3E-06 46.7 1.1 50 114-168 143-194 (291)
71 4gdh_A DJ-1, uncharacterized p 89.3 0.32 1.1E-05 39.5 4.0 74 87-165 23-120 (194)
72 3bhn_A THIJ/PFPI domain protei 88.1 0.21 7.1E-06 42.3 2.1 49 114-168 78-128 (236)
73 2pjk_A 178AA long hypothetical 86.7 1.9 6.5E-05 34.7 7.1 70 55-129 13-94 (178)
74 3pzy_A MOG; ssgcid, seattle st 86.3 0.48 1.7E-05 37.8 3.3 71 53-129 3-79 (164)
75 3kbq_A Protein TA0487; structu 84.5 3.7 0.00012 33.1 7.7 77 86-171 27-108 (172)
76 3h75_A Periplasmic sugar-bindi 84.3 3.8 0.00013 35.1 8.3 62 56-124 2-70 (350)
77 1di6_A MOGA, molybdenum cofact 82.9 1.6 5.5E-05 35.8 5.1 69 56-129 2-79 (195)
78 1jlj_A Gephyrin; globular alph 81.7 1.8 6.2E-05 35.2 4.9 74 51-129 8-91 (189)
79 3l6u_A ABC-type sugar transpor 81.6 8.2 0.00028 31.6 9.2 63 56-126 7-74 (293)
80 3uug_A Multiple sugar-binding 81.6 11 0.00039 31.4 10.2 63 56-126 2-69 (330)
81 3l49_A ABC sugar (ribose) tran 80.6 11 0.00038 30.8 9.6 62 57-126 5-71 (291)
82 1mkz_A Molybdenum cofactor bio 80.4 8.1 0.00028 30.7 8.3 67 55-128 8-81 (172)
83 3m9w_A D-xylose-binding peripl 80.3 9.2 0.00032 31.9 9.1 62 57-126 2-68 (313)
84 2fn9_A Ribose ABC transporter, 79.6 11 0.00037 30.9 9.3 62 57-126 2-68 (290)
85 3tb6_A Arabinose metabolism tr 78.7 17 0.00059 29.6 10.2 62 57-126 15-81 (298)
86 1g8l_A Molybdopterin biosynthe 78.2 5.6 0.00019 36.3 7.5 84 46-129 166-256 (411)
87 3rfq_A Pterin-4-alpha-carbinol 77.8 2.7 9.2E-05 34.2 4.7 70 54-129 27-102 (185)
88 1y5e_A Molybdenum cofactor bio 77.5 6.6 0.00022 31.0 6.9 68 55-129 11-85 (169)
89 3rot_A ABC sugar transporter, 76.9 12 0.00041 30.9 8.8 63 56-126 2-71 (297)
90 3ksm_A ABC-type sugar transpor 74.7 13 0.00044 30.0 8.2 60 58-125 1-68 (276)
91 2pbq_A Molybdenum cofactor bio 73.8 3.6 0.00012 33.0 4.4 68 56-128 4-80 (178)
92 3o74_A Fructose transport syst 73.5 31 0.001 27.6 10.3 61 58-126 3-68 (272)
93 3jy6_A Transcriptional regulat 73.2 23 0.00077 28.8 9.4 63 56-126 6-73 (276)
94 2an1_A Putative kinase; struct 73.0 2 7E-05 36.7 2.9 81 58-161 6-96 (292)
95 1uz5_A MOEA protein, 402AA lon 72.7 8.3 0.00028 35.0 7.0 77 53-129 176-259 (402)
96 3g1w_A Sugar ABC transporter; 71.5 18 0.00062 29.7 8.5 62 57-126 4-71 (305)
97 3hly_A Flavodoxin-like domain; 70.1 20 0.00067 27.6 7.9 45 79-123 13-58 (161)
98 1u0t_A Inorganic polyphosphate 70.0 4.8 0.00016 34.9 4.6 82 59-161 6-108 (307)
99 2dri_A D-ribose-binding protei 69.8 16 0.00056 29.6 7.8 61 57-125 1-66 (271)
100 1z0s_A Probable inorganic poly 69.4 7.1 0.00024 33.8 5.5 69 60-161 32-100 (278)
101 3k4h_A Putative transcriptiona 68.7 33 0.0011 27.8 9.5 63 56-126 7-79 (292)
102 3iwt_A 178AA long hypothetical 67.4 4.6 0.00016 32.0 3.7 42 87-128 45-93 (178)
103 2amj_A Modulator of drug activ 66.5 14 0.00048 29.8 6.6 79 57-144 13-97 (204)
104 3cs3_A Sugar-binding transcrip 66.5 21 0.00071 29.0 7.8 61 56-126 7-67 (277)
105 2ioy_A Periplasmic sugar-bindi 66.1 28 0.00094 28.4 8.5 60 58-125 2-66 (283)
106 3fni_A Putative diflavin flavo 66.0 30 0.001 26.6 8.2 45 79-123 17-63 (159)
107 3h5o_A Transcriptional regulat 65.9 58 0.002 27.3 10.8 62 57-126 62-128 (339)
108 2kyr_A Fructose-like phosphotr 65.8 14 0.00049 27.6 5.9 61 55-128 4-72 (111)
109 2fts_A Gephyrin; gephyrin, neu 65.5 8.2 0.00028 35.2 5.4 77 53-129 177-260 (419)
110 3pfn_A NAD kinase; structural 65.5 2.2 7.5E-05 38.5 1.5 82 59-161 40-141 (365)
111 2vzf_A NADH-dependent FMN redu 65.3 5.9 0.0002 31.5 4.0 91 58-159 4-109 (197)
112 1uuy_A CNX1, molybdopterin bio 65.1 5.6 0.00019 31.3 3.7 69 56-129 4-84 (167)
113 3rpe_A MDAB, modulator of drug 65.0 16 0.00055 30.2 6.7 86 56-146 25-112 (218)
114 8abp_A L-arabinose-binding pro 64.8 24 0.00083 28.9 7.9 60 57-125 2-66 (306)
115 2fvy_A D-galactose-binding per 64.2 40 0.0014 27.5 9.2 60 58-125 3-68 (309)
116 2q62_A ARSH; alpha/beta, flavo 63.1 22 0.00076 29.8 7.4 94 57-159 35-143 (247)
117 2r48_A Phosphotransferase syst 62.7 40 0.0014 24.8 7.8 58 57-127 3-68 (106)
118 2x7x_A Sensor protein; transfe 62.0 38 0.0013 28.3 8.8 60 57-125 6-71 (325)
119 2g2c_A Putative molybdenum cof 61.4 4.5 0.00015 31.9 2.5 69 56-129 4-82 (167)
120 2fep_A Catabolite control prot 61.2 50 0.0017 26.9 9.2 62 57-126 16-82 (289)
121 2rjo_A Twin-arginine transloca 60.6 33 0.0011 28.7 8.2 61 57-125 5-72 (332)
122 3miz_A Putative transcriptiona 60.6 29 0.00099 28.5 7.7 62 56-125 12-79 (301)
123 4dik_A Flavoprotein; TM0755, e 60.6 36 0.0012 30.7 8.8 78 79-157 278-359 (410)
124 3kjx_A Transcriptional regulat 60.4 69 0.0024 26.9 10.2 63 56-126 67-134 (344)
125 3fvw_A Putative NAD(P)H-depend 60.1 16 0.00053 29.1 5.6 79 56-144 2-94 (192)
126 3dbi_A Sugar-binding transcrip 59.8 75 0.0026 26.5 10.3 65 56-126 60-129 (338)
127 3e61_A Putative transcriptiona 59.1 41 0.0014 27.1 8.2 60 57-124 8-72 (277)
128 3ff4_A Uncharacterized protein 58.9 41 0.0014 25.0 7.5 20 85-104 21-40 (122)
129 2rgy_A Transcriptional regulat 58.2 63 0.0022 26.3 9.3 62 57-126 8-77 (290)
130 1sqs_A Conserved hypothetical 58.0 24 0.00082 28.8 6.6 77 58-143 3-105 (242)
131 3egc_A Putative ribose operon 57.6 35 0.0012 27.8 7.6 63 56-126 7-74 (291)
132 2vk2_A YTFQ, ABC transporter p 57.4 42 0.0014 27.6 8.1 61 58-126 3-68 (306)
133 3d8u_A PURR transcriptional re 57.3 32 0.0011 27.6 7.3 62 57-126 3-69 (275)
134 3bbl_A Regulatory protein of L 56.8 60 0.002 26.4 8.9 65 57-126 4-74 (287)
135 1tjy_A Sugar transport protein 56.4 45 0.0015 27.8 8.2 61 57-125 3-69 (316)
136 3kke_A LACI family transcripti 56.4 34 0.0012 28.2 7.4 63 57-127 15-82 (303)
137 3brq_A HTH-type transcriptiona 55.8 68 0.0023 25.8 9.1 62 57-126 19-87 (296)
138 3e3m_A Transcriptional regulat 55.4 52 0.0018 27.9 8.6 62 57-126 70-136 (355)
139 3gv0_A Transcriptional regulat 55.1 52 0.0018 26.8 8.3 65 56-126 7-76 (288)
140 1wu2_A MOEA protein, molybdopt 55.0 14 0.00049 33.3 5.0 76 53-128 178-262 (396)
141 2ioj_A Hypothetical protein AF 54.7 36 0.0012 25.5 6.7 71 85-168 42-114 (139)
142 4gi5_A Quinone reductase; prot 53.3 32 0.0011 29.5 6.8 39 57-103 23-61 (280)
143 2r4q_A Phosphotransferase syst 52.7 61 0.0021 23.8 7.4 58 57-127 3-68 (106)
144 1byk_A Protein (trehalose oper 52.6 36 0.0012 27.1 6.7 61 57-125 2-67 (255)
145 3brs_A Periplasmic binding pro 52.0 30 0.001 28.1 6.2 64 57-126 5-75 (289)
146 3hs3_A Ribose operon repressor 51.8 44 0.0015 27.1 7.3 61 56-124 9-75 (277)
147 2o20_A Catabolite control prot 51.4 97 0.0033 25.8 9.6 62 57-126 63-129 (332)
148 2r47_A Uncharacterized protein 51.3 3.9 0.00013 32.6 0.6 49 115-170 83-133 (157)
149 3huu_A Transcription regulator 51.3 43 0.0015 27.5 7.2 69 56-127 21-94 (305)
150 2fzv_A Putative arsenical resi 50.7 34 0.0012 29.4 6.5 78 57-143 59-149 (279)
151 2is8_A Molybdopterin biosynthe 50.5 21 0.00071 27.9 4.8 43 87-129 26-75 (164)
152 3c3k_A Alanine racemase; struc 49.8 60 0.0021 26.3 7.8 61 57-125 8-73 (285)
153 1gud_A ALBP, D-allose-binding 49.4 58 0.002 26.5 7.7 60 58-125 2-68 (288)
154 3d02_A Putative LACI-type tran 48.6 90 0.0031 25.2 8.8 61 57-125 4-70 (303)
155 2h3h_A Sugar ABC transporter, 48.5 90 0.0031 25.6 8.8 61 57-126 1-67 (313)
156 3qk7_A Transcriptional regulat 47.5 1E+02 0.0035 25.1 9.0 67 57-127 6-76 (294)
157 1t5b_A Acyl carrier protein ph 46.8 61 0.0021 24.9 7.1 40 58-104 3-44 (201)
158 3f2v_A General stress protein 46.6 35 0.0012 27.4 5.6 77 57-144 2-85 (192)
159 1ydg_A Trp repressor binding p 46.6 32 0.0011 27.2 5.4 45 79-123 19-85 (211)
160 3hcw_A Maltose operon transcri 46.3 51 0.0018 27.0 6.9 68 56-126 6-78 (295)
161 3r6w_A FMN-dependent NADH-azor 46.2 58 0.002 25.8 7.0 40 57-103 2-43 (212)
162 3clk_A Transcription regulator 46.2 60 0.002 26.4 7.2 62 57-126 8-75 (290)
163 1t0b_A THUA-like protein; treh 45.6 69 0.0023 26.8 7.6 83 84-172 34-119 (252)
164 3gbv_A Putative LACI-family tr 45.4 1E+02 0.0036 24.7 8.7 62 57-126 8-79 (304)
165 3o1i_D Periplasmic protein TOR 45.3 52 0.0018 26.7 6.7 62 57-126 5-73 (304)
166 1d4a_A DT-diaphorase, quinone 44.7 69 0.0024 26.8 7.5 39 57-103 3-41 (273)
167 2iks_A DNA-binding transcripti 44.2 81 0.0028 25.6 7.8 63 56-126 19-86 (293)
168 3tem_A Ribosyldihydronicotinam 43.2 48 0.0016 27.1 6.1 39 57-103 2-40 (228)
169 2ark_A Flavodoxin; FMN, struct 42.9 36 0.0012 26.5 5.1 61 79-143 17-78 (188)
170 2m1z_A LMO0427 protein; homolo 42.9 53 0.0018 24.1 5.7 58 57-127 3-68 (106)
171 2qv7_A Diacylglycerol kinase D 42.5 51 0.0017 28.4 6.5 88 57-161 24-115 (337)
172 1qpz_A PURA, protein (purine n 42.2 85 0.0029 26.2 7.8 62 57-126 58-124 (340)
173 1eiw_A Hypothetical protein MT 41.2 18 0.0006 26.9 2.8 56 85-158 18-73 (111)
174 2a5l_A Trp repressor binding p 40.9 50 0.0017 25.5 5.7 45 79-123 18-78 (200)
175 3bil_A Probable LACI-family tr 40.1 83 0.0029 26.6 7.4 62 57-126 66-132 (348)
176 2yxb_A Coenzyme B12-dependent 40.0 1.1E+02 0.0039 23.4 7.6 78 56-146 17-96 (161)
177 2i2c_A Probable inorganic poly 40.0 15 0.0005 31.1 2.5 56 82-161 15-70 (272)
178 1jx6_A LUXP protein; protein-l 40.0 1.6E+02 0.0054 24.4 9.8 61 56-124 42-112 (342)
179 3k1y_A Oxidoreductase; structu 39.0 43 0.0015 26.8 5.0 94 55-159 10-125 (191)
180 1dbq_A Purine repressor; trans 38.8 74 0.0025 25.6 6.6 62 57-126 7-73 (289)
181 3i33_A Heat shock-related 70 k 38.3 21 0.00072 31.3 3.3 52 116-171 351-403 (404)
182 4fe7_A Xylose operon regulator 38.0 47 0.0016 29.1 5.6 59 56-123 24-83 (412)
183 3afo_A NADH kinase POS5; alpha 38.0 14 0.00048 33.4 2.1 33 59-100 43-77 (388)
184 1rtt_A Conserved hypothetical 37.0 28 0.00094 27.2 3.5 77 58-144 8-99 (193)
185 3dzv_A 4-methyl-5-(beta-hydrox 36.0 2E+02 0.0068 24.3 9.5 56 54-127 14-69 (273)
186 2hpv_A FMN-dependent NADH-azor 35.5 68 0.0023 25.1 5.7 41 58-104 3-45 (208)
187 3jvd_A Transcriptional regulat 34.5 86 0.003 26.3 6.6 61 56-125 63-128 (333)
188 5nul_A Flavodoxin; electron tr 34.0 88 0.003 22.6 5.8 43 78-123 10-52 (138)
189 3f6r_A Flavodoxin; FMN binding 33.1 98 0.0033 22.6 6.0 42 79-124 14-57 (148)
190 3g85_A Transcriptional regulat 32.2 35 0.0012 27.7 3.5 63 56-125 10-77 (289)
191 1ehs_A STB, heat-stable entero 31.8 21 0.00071 21.9 1.5 33 136-168 13-45 (48)
192 2bon_A Lipid kinase; DAG kinas 31.8 82 0.0028 27.1 6.0 83 58-158 30-116 (332)
193 3lcm_A SMU.1420, putative oxid 31.6 99 0.0034 24.3 6.1 76 59-144 3-100 (196)
194 2hsg_A Glucose-resistance amyl 31.6 92 0.0031 25.9 6.2 62 57-126 60-126 (332)
195 1v8a_A Hydroxyethylthiazole ki 31.2 90 0.0031 26.1 6.0 38 87-127 30-67 (265)
196 3lft_A Uncharacterized protein 30.9 1.2E+02 0.0041 24.7 6.8 59 57-124 2-70 (295)
197 2q9u_A A-type flavoprotein; fl 30.6 2.5E+02 0.0084 24.3 9.1 65 79-144 269-334 (414)
198 2qu7_A Putative transcriptiona 30.5 83 0.0029 25.4 5.6 61 57-126 8-73 (288)
199 3p0r_A Azoreductase; structura 30.2 87 0.003 25.0 5.6 42 56-103 4-47 (211)
200 2fz5_A Flavodoxin; alpha/beta 29.5 1.2E+02 0.0039 21.6 5.8 43 79-124 12-54 (137)
201 2qh8_A Uncharacterized protein 29.4 1.3E+02 0.0045 24.6 6.8 61 56-125 7-78 (302)
202 1jr2_A Uroporphyrinogen-III sy 28.6 67 0.0023 26.8 4.8 42 86-127 39-87 (286)
203 3k9c_A Transcriptional regulat 28.5 62 0.0021 26.4 4.5 62 56-126 11-76 (289)
204 3ezx_A MMCP 1, monomethylamine 28.0 1.7E+02 0.0057 23.7 7.0 88 56-156 91-181 (215)
205 1ccw_A Protein (glutamate muta 27.7 1.9E+02 0.0064 21.4 7.7 54 89-145 25-80 (137)
206 3b6i_A Flavoprotein WRBA; flav 27.3 1.3E+02 0.0044 23.0 6.0 45 79-123 14-75 (198)
207 3inp_A D-ribulose-phosphate 3- 27.3 1.9E+02 0.0066 24.1 7.4 38 85-122 124-162 (246)
208 4id9_A Short-chain dehydrogena 26.8 2.2E+02 0.0075 23.6 7.8 46 82-127 30-88 (347)
209 2qh8_A Uncharacterized protein 26.5 2.6E+02 0.0089 22.8 8.1 67 84-159 158-227 (302)
210 2v7y_A Chaperone protein DNAK; 26.2 48 0.0017 30.4 3.7 53 116-172 302-354 (509)
211 3qfu_A 78 kDa glucose-regulate 26.0 46 0.0016 28.7 3.4 49 116-168 343-392 (394)
212 1dkg_D Molecular chaperone DNA 25.1 39 0.0013 29.2 2.7 47 116-166 333-379 (383)
213 1e5d_A Rubredoxin\:oxygen oxid 24.6 3.3E+02 0.011 23.2 9.2 65 79-144 265-330 (402)
214 3cwc_A Putative glycerate kina 24.2 44 0.0015 30.2 2.9 44 110-159 281-326 (383)
215 3st7_A Capsular polysaccharide 23.8 1.5E+02 0.0051 25.1 6.2 46 82-127 11-57 (369)
216 3hpd_A Hydroxyethylthiazole ki 23.8 1.1E+02 0.0037 26.0 5.2 60 88-156 31-90 (265)
217 2zki_A 199AA long hypothetical 23.2 75 0.0026 24.5 3.9 44 79-123 16-77 (199)
218 3mw8_A Uroporphyrinogen-III sy 22.1 63 0.0022 26.1 3.3 77 85-172 14-95 (240)
219 2ohh_A Type A flavoprotein FPR 21.3 1.8E+02 0.0061 25.0 6.3 80 79-159 269-350 (404)
220 2bwn_A 5-aminolevulinate synth 21.3 2.8E+02 0.0094 23.4 7.5 39 86-125 144-187 (401)
221 1y80_A Predicted cobalamin bin 21.3 3E+02 0.01 21.6 8.9 64 89-156 110-175 (210)
222 2gk3_A Putative cytoplasmic pr 21.0 1.6E+02 0.0053 24.4 5.6 68 85-158 43-124 (256)
223 1ycg_A Nitric oxide reductase; 20.9 2.6E+02 0.0088 23.9 7.3 46 79-124 264-310 (398)
224 3ovp_A Ribulose-phosphate 3-ep 20.4 3.1E+02 0.011 22.3 7.3 38 85-122 102-140 (228)
225 3i6i_A Putative leucoanthocyan 20.4 3.1E+02 0.011 22.8 7.6 37 106-146 71-109 (346)
226 3dzz_A Putative pyridoxal 5'-p 20.1 2.5E+02 0.0086 23.3 6.9 39 86-124 121-168 (391)
No 1
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.94 E-value=1.2e-26 Score=208.45 Aligned_cols=176 Identities=32% Similarity=0.516 Sum_probs=126.8
Q ss_pred CCCCCCCCCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCC
Q 039121 47 CPAPDPSLNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGW 126 (232)
Q Consensus 47 ~~~~~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~ 126 (232)
|-.+.+..+.||+|||++....... ......+|+.++|+++|+++|+.+++++++.+.+++++.++.+||||||||+
T Consensus 20 ~m~~~~~~~~~P~IGI~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~ 96 (315)
T 1l9x_A 20 HMRPHGDTAKKPIIGILMQKCRNKV---MKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGS 96 (315)
T ss_dssp --------CCCCEEEEECEECCSHH---HHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCC
T ss_pred ccCCCcccCCCCEEEEECCcccccc---cccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCC
Confidence 4466777788999999998653210 0112356899999999999999999999877677777777889999999997
Q ss_pred -CCCccCh-hHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCC
Q 039121 127 -AKSGLYY-DIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRF 204 (232)
Q Consensus 127 -~~~~~~~-~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~l 204 (232)
+.++..+ ...+.+++.+++..+.++++||||||+|||+|+.++||++ .+..+..++...|++.+.... .++||+.+
T Consensus 97 ~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~-~~~~~~~~g~~~p~~~~~~~~-~s~L~~~~ 174 (315)
T 1l9x_A 97 VDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGEC-LLTATDTVDVAMPLNFTGGQL-HSRMFQNF 174 (315)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSC-CCEEEEEEEEEECCEECSTTT-TCSTTTTS
T ss_pred cccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCcc-ccccccccCCCCCeeeccCCC-CChHHHhc
Confidence 5555433 3345667777665434446999999999999999999984 333333334445676654434 68899999
Q ss_pred ChhHHhhhcCCccceEeecceee
Q 039121 205 PPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 205 p~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
|+.+.+.+.++..++++|+|++.
T Consensus 175 ~~~~~~~l~~~~~~~~~H~~~V~ 197 (315)
T 1l9x_A 175 PTELLLSLAVEPLTANFHKWSLS 197 (315)
T ss_dssp CHHHHHHHHHSCCEEEEEEEECB
T ss_pred ChhhhhhccccceEEEhhhhhcC
Confidence 99998888888889999999986
No 2
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.90 E-value=1e-23 Score=183.72 Aligned_cols=154 Identities=23% Similarity=0.355 Sum_probs=98.4
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChh
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYD 134 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~ 134 (232)
++||+|||++.......+ ...+...+|+..+|+++++++|+.++++|+..+.+ +++.++.+||||||||++++|..|+
T Consensus 2 ~~~p~IGi~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~~v~P~~yg 79 (254)
T 3fij_A 2 SLKPVIGITGNRLVKGVD-VFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQDITPQLYL 79 (254)
T ss_dssp -CCCEEEEEC-------------------CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCSCCCGGGGT
T ss_pred CCCCEEEEeCCccccccc-ccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCCCCChhhcC
Confidence 368999999986433211 12235678999999999999999999999876655 7777889999999999986665442
Q ss_pred -----------HHH-----HHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCccc-cccc-----------ccCCCceE
Q 039121 135 -----------IVE-----KIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRN-ILET-----------FDRANQAS 186 (232)
Q Consensus 135 -----------~~~-----~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~-il~~-----------~~~e~~~~ 186 (232)
..| .+++.+++ .++||||||+|||+|+.++||++. .+.. ...+.++.
T Consensus 80 ~~~~~~~~~~~~~rd~~~~~lir~a~~-----~~~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~ 154 (254)
T 3fij_A 80 EEPSQEIGAYFPPRDSYEIALVRAALD-----AGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSH 154 (254)
T ss_dssp CCCCTTCCCCCHHHHHHHHHHHHHHHH-----TTCCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCE
T ss_pred CccCcccCCcChhhhHHHHHHHHHHHH-----cCCCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceE
Confidence 223 44555554 469999999999999999999862 1110 01233556
Q ss_pred eEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 187 TLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 187 pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
++.+++ ++.||+.+++.+ .+..+|++.+.
T Consensus 155 ~v~~~~----~s~l~~~~~~~~--------~v~~~H~~~v~ 183 (254)
T 3fij_A 155 TIDIEP----TSELAKHHPNKK--------LVNSLHHQFIK 183 (254)
T ss_dssp EEEECT----TSSGGGTCCTTE--------EECCBCSCEES
T ss_pred EEEeCC----CChHHHhcCCcE--------EEEEeccchhh
Confidence 666652 577888776532 34456777653
No 3
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.72 E-value=4.3e-17 Score=136.05 Aligned_cols=122 Identities=12% Similarity=0.156 Sum_probs=82.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccC--hhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 85 ASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLY--YDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~--~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
.+++++++++|+++++++++. +.+++... .+|||||+||++..... .....++++.+ +.++|+||||+|
T Consensus 15 ~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~--~~dglil~gG~~~~~~~~~~~~~~~~i~~~------~~~~PvLGIC~G 86 (195)
T 1qdl_B 15 YNIAQIVGELGSYPIVIRNDEISIKGIERI--DPDRLIISPGPGTPEKREDIGVSLDVIKYL------GKRTPILGVCLG 86 (195)
T ss_dssp HHHHHHHHHTTCEEEEEETTTSCHHHHHHH--CCSEEEECCCSSCTTSHHHHTTHHHHHHHH------TTTSCEEEETHH
T ss_pred HHHHHHHHhCCCEEEEEeCCCCCHHHHhhC--CCCEEEECCCCCChhhhhhhhHHHHHHHHh------cCCCcEEEEehH
Confidence 578899999999999998753 33333321 69999999987632111 11123344432 346999999999
Q ss_pred HHHHHHHHcCcccccccccCCCceEeEEEeecCCCCC--CCCcCCChhHHhhhcCCccceEeecceee
Q 039121 162 FELLSMIVSEDRNILETFDRANQASTLQFVKNINIEG--TLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 162 ~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s--~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
||+|+.++||++.. .....++++.++.++. .+ +||+++++.+ .++++|++++.
T Consensus 87 ~QlL~~~~gg~v~~-~~~~~~g~~~~v~~~~----~~~~~l~~~~~~~~--------~v~~~H~~~v~ 141 (195)
T 1qdl_B 87 HQAIGYAFGAKIRR-ARKVFHGKISNIILVN----NSPLSLYYGIAKEF--------KATRYHSLVVD 141 (195)
T ss_dssp HHHHHHHTTCEEEE-EEEEEEEEEEEEEECC----SSCCSTTTTCCSEE--------EEEEEEEEEEE
T ss_pred HHHHHHHhCCEEec-cCCCcCCCceEEEECC----CCHhHHHhcCCCce--------EEeccccchhh
Confidence 99999999998531 1122344455566542 45 8999887544 68999999984
No 4
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.71 E-value=6e-18 Score=144.29 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=89.0
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHH
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIV 136 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~ 136 (232)
.+.|+|+-... +|. .+++++++++|+++++++++.+.++++. +.+||||||||++. + +....
T Consensus 24 ~~~I~iiD~g~-------------~~~-~~i~~~l~~~G~~~~vv~~~~~~~~l~~--~~~dglil~Gg~~~-~-~~~~~ 85 (218)
T 2vpi_A 24 EGAVVILDAGA-------------QYG-KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNS-V-YAEDA 85 (218)
T ss_dssp TTCEEEEECST-------------TTT-HHHHHHHHHTTCCEEEECTTCCHHHHHH--HTCSEEEEEC-----------C
T ss_pred CCeEEEEECCC-------------chH-HHHHHHHHHCCCEEEEEECCCChHHHhh--cCCCEEEECCCCcc-c-ccccc
Confidence 46788886532 232 4778899999999999998776666553 47999999999862 1 10000
Q ss_pred HHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCc
Q 039121 137 EKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDC 216 (232)
Q Consensus 137 ~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~ 216 (232)
..+.+.+ .+.++||||||+|||+|+.++||++.-.. ..+.++.++.+++ .++||+++++++
T Consensus 86 ~~~~~~~-----~~~~~PilGIC~G~Qll~~~~GG~v~~~~--~~~~G~~~v~~~~----~~~l~~~l~~~~-------- 146 (218)
T 2vpi_A 86 PWFDPAI-----FTIGKPVLGICYGMQMMNKVFGGTVHKKS--VREDGVFNISVDN----TCSLFRGLQKEE-------- 146 (218)
T ss_dssp CCCCGGG-----GTSSCCEEEETHHHHHHHHHTTCCEEEEE--ECSCEEEEEEECT----TSGGGTTCCSEE--------
T ss_pred hhHHHHH-----HHcCCCEEEEcHHHHHHHHHhCCceEeCC--CCcccEEEEEEcc----CChhHhcCCCCc--------
Confidence 0011111 23479999999999999999999853221 2455667776652 578999887543
Q ss_pred cceEeecceee
Q 039121 217 LVMQNHHVRKL 227 (232)
Q Consensus 217 ~~y~~Hs~gv~ 227 (232)
.+|++|++++.
T Consensus 147 ~v~~~H~~~v~ 157 (218)
T 2vpi_A 147 VVLLTHGDSVD 157 (218)
T ss_dssp EEEECSEEEES
T ss_pred EEeehhhhHhh
Confidence 58899999974
No 5
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.71 E-value=1.3e-17 Score=141.41 Aligned_cols=120 Identities=15% Similarity=0.263 Sum_probs=82.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCC-CCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGG-WAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG-~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
..+++++|+++|+++++++++.+.++ ++.+|||||||| +...... .....+.+.+++. ++|+||||+||
T Consensus 26 ~~~~~~~l~~~G~~~~vv~~~~~~~~----l~~~DglIl~GG~p~~~~~~-~~~~~l~~~~~~~-----~~PiLGIC~G~ 95 (212)
T 2a9v_A 26 THREWRVLRELGVDTKIVPNDIDSSE----LDGLDGLVLSGGAPNIDEEL-DKLGSVGKYIDDH-----NYPILGICVGA 95 (212)
T ss_dssp TCHHHHHHHHTTCBCCEEETTSCGGG----GTTCSEEEEEEECSCGGGTG-GGHHHHHHHHHHC-----CSCEEEETHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHH----HhCCCEEEECCCCCCCCccc-ccchhHHHHHHhC-----CCCEEEEChHH
Confidence 35789999999999999998654443 456999999999 5411110 0122334444433 69999999999
Q ss_pred HHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 163 ELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 163 QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
|+|+.++||++.-.. ..+.++.++.+++ +++||+++++.+ .+|++|++++.
T Consensus 96 Qll~~~lGg~v~~~~--~~~~G~~~v~~~~----~~~l~~~~~~~~--------~v~~~H~~~v~ 146 (212)
T 2a9v_A 96 QFIALHFGASVVKAK--HPEFGKTKVSVMH----SENIFGGLPSEI--------TVWENHNDEII 146 (212)
T ss_dssp HHHHHHTTCEEEEEE--EEEEEEEEEEESC----CCGGGTTCCSEE--------EEEEEEEEEEE
T ss_pred HHHHHHhCCEEEcCC--CcccCceeeEECC----CChhHhcCCCce--------EEEeEhhhhHh
Confidence 999999999853211 1334555665542 567998887543 57999999874
No 6
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.70 E-value=1.3e-16 Score=132.61 Aligned_cols=123 Identities=14% Similarity=0.183 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcC--CCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEILFEKLEL--VNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~--~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
..+++++|++.|+++++++++.+.+++.+.+.. .+++|++||++.... .+....+++. ++ +++||||||+|
T Consensus 13 ~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~-~~~~~~l~~~-~~-----~~~PilGIC~G 85 (192)
T 1i1q_B 13 TWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSE-AGCMPELLTR-LR-----GKLPIIGICLG 85 (192)
T ss_dssp HHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGG-STTHHHHHHH-HB-----TTBCEEEETHH
T ss_pred HHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchh-CchHHHHHHH-Hh-----cCCCEEEECcC
Confidence 568899999999999999987655666444432 457999999873211 1223334443 32 36999999999
Q ss_pred HHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 162 FELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 162 ~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
||+|+.++||++.... . .+.+...... . . .+++|+++++.+ .+|++|++++.
T Consensus 86 ~Qll~~~~Gg~v~~~~-~-~~~g~~~~~~--~-~-~~~l~~~~~~~~--------~v~~~H~~~v~ 137 (192)
T 1i1q_B 86 HQAIVEAYGGYVGQAG-E-ILHGKATSIE--H-D-GQAMFAGLANPL--------PVARYHSLVGS 137 (192)
T ss_dssp HHHHHHHTSCCCCC-----CCSSEEEEEE--E-C-CCGGGTTSCSSE--------EEEECCC---C
T ss_pred hHHHHHHhCCEEEeCC-C-cEecceeEEe--c-C-CChHHhcCCCCc--------EEEechhhHhh
Confidence 9999999999853121 1 1222222211 1 2 467888876533 68999999873
No 7
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.69 E-value=4.1e-17 Score=140.74 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=85.2
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC--C---ccChhHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK--S---GLYYDIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~--~---~~~~~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
++.+++++.|+.+++++++. .+.+++.++.+||||||||+.. + ..+.....++++.+++. ++||||||+
T Consensus 28 ~i~~~l~~~G~~v~v~~~~~-~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~-----~~PiLGIC~ 101 (239)
T 1o1y_A 28 MMEDIFREKNWSFDYLDTPK-GEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKK-----EIPFLGICL 101 (239)
T ss_dssp HHHHHHHHTTCEEEEECGGG-TCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHH-----TCCEEEETH
T ss_pred HHHHHHHhCCCcEEEeCCcC-ccccccchhcCCEEEECCCCccccCCccChhHHHHHHHHHHHHHC-----CCCEEEEch
Confidence 56678999999988777643 2233444678999999999841 1 12233456777777766 499999999
Q ss_pred HHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeeccee
Q 039121 161 GFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRK 226 (232)
Q Consensus 161 G~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv 226 (232)
|||+|+.++||++. ......+.++.++... . .++||+++++.+ .+|++|++.+
T Consensus 102 G~QlL~~alGG~v~-~~~~g~~~G~~~v~~~---~-~~~l~~~~~~~~--------~~~~~H~~~v 154 (239)
T 1o1y_A 102 GSQMLAKVLGASVY-RGKNGEEIGWYFVEKV---S-DNKFFREFPDRL--------RVFQWHGDTF 154 (239)
T ss_dssp HHHHHHHHTTCCEE-ECTTCCEEEEEEEEEC---C-CCGGGTTSCSEE--------EEEEEESEEE
T ss_pred hHHHHHHHcCCeEe-cCCCCCccccEEEEEC---C-CCchHHhCCCCc--------eeEeecCCcc
Confidence 99999999999853 2222134455666532 2 578998887543 6899999986
No 8
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.68 E-value=2.2e-16 Score=130.76 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=78.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHH
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFE 163 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Q 163 (232)
..+++++++++|+++++++++.+.+++.+ +.+||||||||+. +.......++++.+. +.++|+||||+|||
T Consensus 13 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~dglil~Gg~~--~~~~~~~~~~i~~~~-----~~~~PilGIC~G~Q 83 (189)
T 1wl8_A 13 VHRIWRTLRYLGVETKIIPNTTPLEEIKA--MNPKGIIFSGGPS--LENTGNCEKVLEHYD-----EFNVPILGICLGHQ 83 (189)
T ss_dssp HHHHHHHHHHTTCEEEEEETTCCHHHHHH--TCCSEEEECCCSC--TTCCTTHHHHHHTGG-----GTCSCEEEETHHHH
T ss_pred HHHHHHHHHHCCCeEEEEECCCChHHhcc--cCCCEEEECCCCC--hhhhhhHHHHHHHHh-----hCCCeEEEEcHHHH
Confidence 35888999999999999998665444432 3699999999983 322233344444332 34699999999999
Q ss_pred HHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeeccee
Q 039121 164 LLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRK 226 (232)
Q Consensus 164 lL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv 226 (232)
+|+.++||++.-. . ..+.++.++..+ . .+++|+++++++ .+|+.|++.+
T Consensus 84 ~l~~~~gg~v~~~-~-~~~~G~~~~~~~---~-~~~l~~~~~~~~--------~~~~~h~~~v 132 (189)
T 1wl8_A 84 LIAKFFGGKVGRG-E-KAEYSLVEIEII---D-EXEIFKGLPKRL--------KVWESHMDEV 132 (189)
T ss_dssp HHHHHHTCEEEEC-S-CCSCEEEEEEES---C-C--CCTTSCSEE--------EEEECCSEEE
T ss_pred HHHHHhCCceecC-C-CcccCceeEEEe---c-CchHHhCCCCce--------EEEEEeeeeh
Confidence 9999999985321 1 224455555443 2 567898877543 3455555543
No 9
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.67 E-value=5.2e-17 Score=141.52 Aligned_cols=124 Identities=13% Similarity=0.076 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC---CccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK---SGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~---~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
.++.+++++.|.++.++.+.... .+.+.++.+|||||+||+.. +..+...+.++++.+++. ++||||||+|
T Consensus 18 ~~i~~~l~~~G~~v~v~~~~~~~-~~p~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~-----~~PvlGIC~G 91 (250)
T 3m3p_A 18 GHFGDFLAGEHIPFQVLRMDRSD-PLPAEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQ-----RVPVIGHCLG 91 (250)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGTC-CCCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHH-----TCCEEEETHH
T ss_pred HHHHHHHHHCCCeEEEEeccCCC-cCcCccccCCEEEECCCCCcccccchHHHHHHHHHHHHHHc-----CCCEEEECHH
Confidence 46778899999999888754321 12223568999999999862 124555667778887776 4999999999
Q ss_pred HHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeeccee
Q 039121 162 FELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRK 226 (232)
Q Consensus 162 ~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv 226 (232)
||+|+.++||++.-. ...+.++.++.+++... .++|| ++|+.+ .+|++|++.+
T Consensus 92 ~Qll~~~lGG~V~~~--~~~e~G~~~v~~~~~~~-~~~l~-g~~~~~--------~v~~~H~~~v 144 (250)
T 3m3p_A 92 GQLLAKAMGGEVTDS--PHAEIGWVRAWPQHVPQ-ALEWL-GTWDEL--------ELFEWHYQTF 144 (250)
T ss_dssp HHHHHHHTTCCEEEE--EEEEEEEEEEEECSSHH-HHHHH-SCSSCE--------EEEEEEEEEE
T ss_pred HHHHHHHhCCEEEeC--CCCceeeEEEEEecCCC-Ccccc-cCCCcc--------EEEEEcccee
Confidence 999999999995311 12455677777653211 24577 666443 6899999986
No 10
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.66 E-value=1.1e-16 Score=152.49 Aligned_cols=143 Identities=15% Similarity=0.175 Sum_probs=96.4
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhH
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDI 135 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~ 135 (232)
.++.|+|+-.. .+|. .+++++|+++|+.++++|++.+.+++.+. .+||||||||+... +...
T Consensus 6 ~~~~IlIlD~g-------------~~~~-~~i~r~lr~~G~~~~i~p~~~~~~~i~~~--~~dgiILsGGp~s~--~~~~ 67 (525)
T 1gpm_A 6 HKHRILILDFG-------------SQYT-QLVARRVRELGVYCELWAWDVTEAQIRDF--NPSGIILSGGPEST--TEEN 67 (525)
T ss_dssp TSSEEEEEECS-------------CTTH-HHHHHHHHHTTCEEEEEESCCCHHHHHHH--CCSEEEECCCSSCT--TSTT
T ss_pred CCCEEEEEECC-------------CccH-HHHHHHHHHCCCEEEEEECCCCHHHHhcc--CCCEEEECCcCccc--cccC
Confidence 45788888542 2243 67889999999999999998777777654 68999999998621 1000
Q ss_pred HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCC
Q 039121 136 VEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTD 215 (232)
Q Consensus 136 ~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~ 215 (232)
...+.+.+ .+.++||||||+|||+|+.++||++.... ..+.++..+.++. +++||+++++.........
T Consensus 68 ~~~~~~~~-----~~~g~PvLGIC~G~Qlla~~~GG~V~~~~--~~e~G~~~v~~~~----~~~L~~~l~~~~~~~~~~~ 136 (525)
T 1gpm_A 68 SPRAPQYV-----FEAGVPVFGVCYGMQTMAMQLGGHVEASN--EREFGYAQVEVVN----DSALVRGIEDALTADGKPL 136 (525)
T ss_dssp CCCCCGGG-----GTSSSCEEEETHHHHHHHHHHTCEEECCS--SCEEEEEEEEECS----CCTTTTTCCSEECTTSCEE
T ss_pred CcchHHHH-----HHCCCCEEEEChHHHHHHHHcCCEEEeCC--CcccceEEEEeCC----CCHhhccCccccccccccc
Confidence 00011112 23469999999999999999999953221 2355566666542 5789999886332223334
Q ss_pred ccceEeecceee
Q 039121 216 CLVMQNHHVRKL 227 (232)
Q Consensus 216 ~~~y~~Hs~gv~ 227 (232)
..++++|++++.
T Consensus 137 ~~v~~~H~~~V~ 148 (525)
T 1gpm_A 137 LDVWMSHGDKVT 148 (525)
T ss_dssp EEEEEEECSEEE
T ss_pred eEEEEEccceee
Confidence 468999999874
No 11
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.65 E-value=1.7e-16 Score=136.41 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=87.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC------CccChhH--HHHHHHHHHHhcCCCCCccEe
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAK------SGLYYDI--VEKIFKKILEKNDAGDHFPVY 156 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~------~~~~~~~--~~~~~~~~l~~~~~~~~~PIL 156 (232)
..+.+++++.|.++.+++.... +.+.+.++.+|+||++||+.. +..|... +.++++.+++. ++|||
T Consensus 15 g~~~~~l~~~g~~~~~~~~~~~-~~~p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~PvL 88 (236)
T 3l7n_A 15 GAYLAWAALRGHDVSMTKVYRY-EKLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKS-----EKIIV 88 (236)
T ss_dssp HHHHHHHHHTTCEEEEEEGGGT-CCCCSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHT-----TCEEE
T ss_pred hHHHHHHHHCCCeEEEEeeeCC-CCCCCCccccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHc-----CCCEE
Confidence 3566789999999988876432 112223568999999999873 1133433 66778877765 59999
Q ss_pred ehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecce
Q 039121 157 AICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVR 225 (232)
Q Consensus 157 GIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~g 225 (232)
|||+|||+|+.++||++.. . ...+.++.++.++.... .++||+++++.+ .+|++|++.
T Consensus 89 GIClG~QlL~~~~Gg~v~~-~-~~~~~G~~~v~~~~~~~-~~~l~~~~~~~~--------~v~~~H~~~ 146 (236)
T 3l7n_A 89 GVCLGAQLMGVAYGADYLH-S-PKKEIGNYLISLTEAGK-MDSYLSDFSDDL--------LVGHWHGDM 146 (236)
T ss_dssp EETHHHHHHHHHTTCCCEE-E-EEEEEEEEEEEECTTGG-GCGGGTTSCSEE--------EEEEEEEEE
T ss_pred EEchHHHHHHHHhCCEEec-C-CCceeeeEEEEEccCcc-cChHHhcCCCCc--------EEEEecCCc
Confidence 9999999999999998531 1 12355677777764433 578999888654 588889875
No 12
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.62 E-value=2.1e-16 Score=150.71 Aligned_cols=142 Identities=16% Similarity=0.100 Sum_probs=91.5
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHH
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIV 136 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~ 136 (232)
+..|+|+-.- .+|. ++++++++++|+.++++|++.+.+++.+. .+||||||||+... +....
T Consensus 10 ~~~I~IlD~g-------------~~~~-~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~--~~dgIILsGGp~sv--~~~~~ 71 (527)
T 3tqi_A 10 QHRILILDFG-------------SQYA-QLIARRVREIGVYCELMPCDIDEETIRDF--NPHGIILSGGPETV--TLSHT 71 (527)
T ss_dssp CSEEEEEECS-------------CTTH-HHHHHHHHHHTCEEEEEETTCCSSSSTTT--CCSEEEECCCCC---------
T ss_pred CCeEEEEECC-------------CccH-HHHHHHHHHCCCeEEEEECCCCHHHHHhc--CCCEEEECCcCccc--ccCCC
Confidence 4578887542 2343 57888999999999999987766654332 57999999998721 11111
Q ss_pred HHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCc
Q 039121 137 EKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDC 216 (232)
Q Consensus 137 ~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~ 216 (232)
.... +...+.++||||||+|||+|+.++||++.. ....+.++..+.++. .++||+++++..........
T Consensus 72 ~~~~-----~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~--~~~~e~G~~~v~~~~----~~~l~~~l~~~~~~~~~~~~ 140 (527)
T 3tqi_A 72 LRAP-----AFIFEIGCPVLGICYGMQTMAYQLGGKVNR--TAKAEFGHAQLRVLN----PAFLFDGIEDQVSPQGEPLL 140 (527)
T ss_dssp --CC-----CSTTTSSSCEEEETHHHHHHHHHSSSCBC-------CEEEEEEEESS----CTTTTSSCCSBCCTTSCCEE
T ss_pred hhhH-----HHHHhcCCCEEEEChHHHHHHHHcCCeEEe--CCCccccceEEEEcC----CChhhcCCccccccccccce
Confidence 1111 222345799999999999999999999531 122456666676642 46799999863211111134
Q ss_pred cceEeecceee
Q 039121 217 LVMQNHHVRKL 227 (232)
Q Consensus 217 ~~y~~Hs~gv~ 227 (232)
.++++|++.+.
T Consensus 141 ~v~~~H~d~v~ 151 (527)
T 3tqi_A 141 DVWMSHGDIVS 151 (527)
T ss_dssp EEEEESSSCBC
T ss_pred EEEEEcccchh
Confidence 68899999874
No 13
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.60 E-value=1.1e-15 Score=146.64 Aligned_cols=127 Identities=16% Similarity=0.203 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCC--ccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKS--GLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~--~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
.++++++|+++|+.+++++++.+.+++.. ..+||||||||+... .........+++.+.+. ++||||||+|
T Consensus 20 ~~~I~r~lre~Gv~~eiv~~~~~~~~i~~--~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~-----g~PvLGIC~G 92 (556)
T 3uow_A 20 FHLIVKRLNNIKIFSETKDYGVELKDIKD--MNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEK-----KIPIFGICYG 92 (556)
T ss_dssp HHHHHHHHHHTTCCEEEEETTCCGGGTTT--SCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHT-----TCCEEEETHH
T ss_pred HHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEECCCCCcccccCCcchhHHHHHHhhhc-----CCCEEEECHH
Confidence 36888899999999999998776665432 278999999998621 11111123556666654 5999999999
Q ss_pred HHHHHHHHcCcccccccccCCCceEeEEEeecCC---------------------------CCCCCCcCC-ChhHHhhhc
Q 039121 162 FELLSMIVSEDRNILETFDRANQASTLQFVKNIN---------------------------IEGTLFQRF-PPELLKKLS 213 (232)
Q Consensus 162 ~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~---------------------------~~s~LF~~l-p~~l~~~l~ 213 (232)
||+|+.++||++.. ....+.+...+.++.... ..++||+++ ++
T Consensus 93 ~QlLa~~lGG~V~~--~~~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~------- 163 (556)
T 3uow_A 93 MQEIAVQMNGEVKK--SKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSD------- 163 (556)
T ss_dssp HHHHHHHTTCEEEE--EEEEEEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCSS-------
T ss_pred HHHHHHHhCCcEec--CCCcccCCcceeeccCcccccccceecccccccccccccccccccccchhhcccccC-------
Confidence 99999999998531 112344555566653220 012566666 43
Q ss_pred CCccceEeecceee
Q 039121 214 TDCLVMQNHHVRKL 227 (232)
Q Consensus 214 ~~~~~y~~Hs~gv~ 227 (232)
...++++|++.+.
T Consensus 164 -~~~v~~~H~d~V~ 176 (556)
T 3uow_A 164 -ITTVWMNHNDEVT 176 (556)
T ss_dssp -EEEEEEEEEEEEE
T ss_pred -ceEEEEEccceee
Confidence 3368999999874
No 14
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.60 E-value=1.8e-16 Score=133.19 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhH--HHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDI--VEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~--~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
+|+.++|+++|++++++. ++++ ++.+||||||||... ...... .+++++.+.+. ++||||||+||
T Consensus 16 ~si~~al~~~G~~~~v~~---~~~~----l~~~D~lilPG~g~~-~~~~~~~~~~~~i~~~~~~-----~~PvlGIClG~ 82 (211)
T 4gud_A 16 SSVKFAIERLGYAVTISR---DPQV----VLAADKLFLPGVGTA-SEAMKNLTERDLIELVKRV-----EKPLLGICLGM 82 (211)
T ss_dssp HHHHHHHHHTTCCEEEEC---CHHH----HHHCSEEEECCCSCH-HHHHHHHHHTTCHHHHHHC-----CSCEEEETHHH
T ss_pred HHHHHHHHHCCCEEEEEC---CHHH----HhCCCEEEECCCCCH-HHHHHHHHhcChHHHHHHc-----CCCEEEEchhH
Confidence 688999999999998753 4554 456899999985541 111111 22344555444 69999999999
Q ss_pred HHHHHHHcCcc
Q 039121 163 ELLSMIVSEDR 173 (232)
Q Consensus 163 QlL~~~~GG~~ 173 (232)
|+|+.++|+++
T Consensus 83 QlL~~~~g~~~ 93 (211)
T 4gud_A 83 QLLGKLSEEKG 93 (211)
T ss_dssp HTTSSEECCC-
T ss_pred hHHHHHhCCcc
Confidence 99999988864
No 15
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.60 E-value=2.2e-15 Score=138.48 Aligned_cols=82 Identities=22% Similarity=0.370 Sum_probs=64.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFEL 164 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~Ql 164 (232)
.+++++|+++|++++++|++.+.+++.. ..+|||||+||+.. +.......++++.++++ ++||||||+|||+
T Consensus 202 ~ni~r~L~~~G~~v~vvp~~~~~e~i~~--~~~DGliLsGGPgd-p~~~~~~~~~Ir~~~~~-----~~PILGIClG~QL 273 (379)
T 1a9x_B 202 RNILRMLVDRGCRLTIVPAQTSAEDVLK--MNPDGIFLSNGPGD-PAPCDYAITAIQKFLET-----DIPVFGICLGHQL 273 (379)
T ss_dssp HHHHHHHHHTTEEEEEEETTCCHHHHHT--TCCSEEEECCCSBC-STTCHHHHHHHHHHTTS-----CCCEEEETHHHHH
T ss_pred HHHHHHHHHCCCEEEEEeccCCHHHHhh--cCCCEEEEeCCCCC-hHHHHHHHHHHHHHHHc-----CCCEEEECchHHH
Confidence 4788999999999999998877666543 26999999999973 32223445566666543 5999999999999
Q ss_pred HHHHHcCccc
Q 039121 165 LSMIVSEDRN 174 (232)
Q Consensus 165 L~~~~GG~~~ 174 (232)
|+.++||++.
T Consensus 274 La~A~GG~v~ 283 (379)
T 1a9x_B 274 LALASGAKTV 283 (379)
T ss_dssp HHHHTTCCEE
T ss_pred HHHHhCcEEE
Confidence 9999999863
No 16
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.59 E-value=4e-16 Score=147.92 Aligned_cols=123 Identities=17% Similarity=0.187 Sum_probs=83.5
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehh
Q 039121 80 ASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 80 ~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
.+|. ++++++++++|+.++++|++.+.+++.+. .+||||||||++.. +......+.+.+ .+.++||||||
T Consensus 9 ~~~~-~~i~r~l~~~G~~~~i~p~~~~~~~i~~~--~~dgiIlsGGp~s~--~~~~~~~~~~~~-----~~~~~PvLGIC 78 (503)
T 2ywb_A 9 SQYT-RLIARRLRELRAFSLILPGDAPLEEVLKH--RPQALILSGGPRSV--FDPDAPRPDPRL-----FSSGLPLLGIC 78 (503)
T ss_dssp CTTH-HHHHHHHHTTTCCEEEEETTCCHHHHHTT--CCSEEEECCCSSCS--SCTTCCCCCGGG-----GCSSCCEEEET
T ss_pred CcHH-HHHHHHHHHCCCEEEEEECCCCHHHHHhc--CCCEEEECCCCchh--ccCCCcchHHHH-----HhCCCCEEEEC
Confidence 3454 68899999999999999998777776553 57999999998621 100000001111 23479999999
Q ss_pred HHHHHHHHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 160 LGFELLSMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 160 lG~QlL~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
+|||+|+.++||++.-. ...+.++..++++ .++||+++++. ..++++|++++.
T Consensus 79 ~G~Qlla~~~GG~v~~~--~~~e~G~~~v~~~-----~~~l~~~~~~~--------~~v~~~H~~~v~ 131 (503)
T 2ywb_A 79 YGMQLLAQELGGRVERA--GRAEYGKALLTRH-----EGPLFRGLEGE--------VQVWMSHQDAVT 131 (503)
T ss_dssp HHHHHHHHTTTCEEECC-----CEEEEECSEE-----CSGGGTTCCSC--------CEEEEECSCEEE
T ss_pred HHHHHHHHHhCCeEeeC--CCCccceEEEEec-----CcHHhhcCCCc--------cEEEEECCCccc
Confidence 99999999999995311 1234555555443 25689888743 368899999984
No 17
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.53 E-value=6.6e-14 Score=117.15 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=81.8
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCcc-----
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGL----- 131 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~----- 131 (232)
++.|+|+..++. ....+++++++++|+++++++... .++.+|+||||||.+....
T Consensus 2 ~~~i~il~~~~~-------------~~~~~~~~~l~~~g~~~~~~~~~~-------~~~~~d~lil~Gg~~~~~~~~~~~ 61 (213)
T 3d54_D 2 KPRACVVVYPGS-------------NCDRDAYHALEINGFEPSYVGLDD-------KLDDYELIILPGGFSYGDYLRPGA 61 (213)
T ss_dssp CCEEEEECCTTE-------------EEHHHHHHHHHTTTCEEEEECTTC-------CCSSCSEEEECEECGGGGCSSTTH
T ss_pred CcEEEEEEcCCC-------------CccHHHHHHHHHCCCEEEEEecCC-------CcccCCEEEECCCCchhhhhcccc
Confidence 467899876542 111366889999999999887532 2568999999998762111
Q ss_pred C--hhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH--HcCcccccccccCCCceEeEEEeecCCCCCCCCcCCCh
Q 039121 132 Y--YDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI--VSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPP 206 (232)
Q Consensus 132 ~--~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~--~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~ 206 (232)
+ .....++++.+.++ ++||||||+|+|+|+.+ ++|++........+.++.+++++. . .++||+.+++
T Consensus 62 ~~~~~~~~~~l~~~~~~-----~~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~~--~-~~~l~~~~~~ 132 (213)
T 3d54_D 62 VAAREKIAFEIAKAAER-----GKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVEN--N-DTPFTNAFEK 132 (213)
T ss_dssp HHHTSTTHHHHHHHHHH-----TCEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEECC--C-SSTTSTTSCT
T ss_pred ccccHHHHHHHHHHHHC-----CCEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeCC--C-CCceeeccCC
Confidence 1 12244666666655 49999999999999999 888753211111256677776642 2 5789988764
No 18
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.52 E-value=2.2e-14 Score=126.07 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=66.3
Q ss_pred CEEEEeCCCC-CCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChH--H----HHHhhcCCCEEEECCCCCCCc
Q 039121 58 PVIGILSHPG-DGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEE--I----LFEKLELVNGILYTGGWAKSG 130 (232)
Q Consensus 58 PvIGI~~~~~-~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e--~----l~~~l~~~dGlIl~GG~~~~~ 130 (232)
+.|+|+...+ .- .+...++ ..++.++..+.|+++.+++++...- + +.+.++.+||||||||+.. +
T Consensus 9 ~~Iaivg~y~~~~------~dny~S~-~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~-~ 80 (273)
T 2w7t_A 9 VRIAFVGKYLQDA------GDTYFSV-LQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGN-R 80 (273)
T ss_dssp EEEEEEECCHHHH------TTTTHHH-HHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTT-T
T ss_pred CEEEEEeCCCcCC------chHHHHH-HHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCC-c
Confidence 7899996542 00 0112222 2344445555677787777653210 0 3345678999999999763 2
Q ss_pred cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 131 LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
......++++.+++. ++||||||+|||+|+.++||++
T Consensus 81 -~~~~~~~~i~~~~~~-----~~PilGIC~G~Qll~~a~Gg~v 117 (273)
T 2w7t_A 81 -GVDGKCAAAQVARMN-----NIPYFGVXLGMQVAVIELSRNV 117 (273)
T ss_dssp -THHHHHHHHHHHHHH-----TCCEEEETHHHHHHHHHHHHHT
T ss_pred -CchhHHHHHHHHHHC-----CCcEEEECcCHHHHHHHHhCcc
Confidence 222344667777665 4999999999999999999986
No 19
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.51 E-value=7.1e-15 Score=121.21 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=53.7
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChh--HHHHHHHHHHHhcCCCCCccEeehhHHHH
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYD--IVEKIFKKILEKNDAGDHFPVYAICLGFE 163 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~--~~~~~~~~~l~~~~~~~~~PILGIClG~Q 163 (232)
+++++++++|+++++++. ++ .++.+||||||||++. .+.. ..+++++.+. ++++||||||+|||
T Consensus 14 ~~~~~l~~~G~~~~~~~~---~~----~~~~~dglil~GG~~~--~~~~~~~~~~~~~~i~-----~~~~PilGIC~G~Q 79 (186)
T 2ywj_A 14 EHEEAIKKAGYEAKKVKR---VE----DLEGIDALIIPGGEST--AIGKLMKKYGLLEKIK-----NSNLPILGTCAGMV 79 (186)
T ss_dssp HHHHHHHHTTSEEEEECS---GG----GGTTCSEEEECCSCHH--HHHHHHHHTTHHHHHH-----TCCCCEEEETHHHH
T ss_pred HHHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCch--hhhhhhhccCHHHHHH-----hcCCcEEEECHHHH
Confidence 567889999999988863 22 2568999999999761 1111 1223444433 34799999999999
Q ss_pred HHHHHHcCcc
Q 039121 164 LLSMIVSEDR 173 (232)
Q Consensus 164 lL~~~~GG~~ 173 (232)
+|+.++||++
T Consensus 80 ll~~~~gg~~ 89 (186)
T 2ywj_A 80 LLSKGTGINQ 89 (186)
T ss_dssp HHSSCCSSCC
T ss_pred HHHHHhCCCc
Confidence 9999999984
No 20
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.50 E-value=6.5e-15 Score=121.47 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=61.7
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccCh--
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYY-- 133 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~-- 133 (232)
+||+|||+..++. ..+++++++++|+++++++.. + .++.+||||||||+.......
T Consensus 1 ~~p~Igi~~~~~~---------------~~~~~~~l~~~G~~~~~~~~~---~----~l~~~dglil~GG~~~~~~~~~~ 58 (191)
T 2ywd_A 1 MRGVVGVLALQGD---------------FREHKEALKRLGIEAKEVRKK---E----HLEGLKALIVPGGESTTIGKLAR 58 (191)
T ss_dssp --CCEEEECSSSC---------------HHHHHHHHHTTTCCCEEECSG---G----GGTTCSEEEECSSCHHHHHHHHH
T ss_pred CCcEEEEEecCCc---------------hHHHHHHHHHCCCEEEEeCCh---h----hhccCCEEEECCCChhhhHHhhh
Confidence 4899999987531 147889999999999888642 2 256799999999953111111
Q ss_pred -hHHHHHHHHHHHhcCCCCC-ccEeehhHHHHHHHHHHcC
Q 039121 134 -DIVEKIFKKILEKNDAGDH-FPVYAICLGFELLSMIVSE 171 (232)
Q Consensus 134 -~~~~~~~~~~l~~~~~~~~-~PILGIClG~QlL~~~~GG 171 (232)
....+.++.+++ ++ +||||||+|||+|+.++||
T Consensus 59 ~~~~~~~i~~~~~-----~~~~PilGiC~G~Q~l~~~~gg 93 (191)
T 2ywd_A 59 EYGIEDEVRKRVE-----EGSLALFGTCAGAIWLAKEIVG 93 (191)
T ss_dssp HTTHHHHHHHHHH-----TTCCEEEEETHHHHHHEEEETT
T ss_pred hhhHHHHHHHHHH-----CCCCeEEEECHHHHHHHHHhCC
Confidence 112334444433 36 9999999999999999998
No 21
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.49 E-value=8.4e-15 Score=143.78 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=78.8
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHH
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELL 165 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL 165 (232)
.+.+.++++|+.++++|++.+.+++.. ..+||||||||++.. +......+.+.+ .+.++||||||+|||+|
T Consensus 44 liar~lre~Gv~~~ivp~~~~~e~i~~--~~~dGIILsGGp~s~--~~~~~~~~~~~i-----~~~g~PvLGIC~G~QlL 114 (697)
T 2vxo_A 44 VIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNSV--YAEDAPWFDPAI-----FTIGKPVLGICYGMQMM 114 (697)
T ss_dssp HHHHHHHHTTCCEEEEETTCCHHHHHH--HTCSEEEEEECC---------CCCCCGGG-----TTSSCCEEEEEHHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHhh--cCCCEEEECCCCCcc--cCccchhHHHHH-----HhCCCCEEEECHHHHHH
Confidence 456789999999999999887776654 479999999999721 100000001111 23469999999999999
Q ss_pred HHHHcCcccccccccCCCceEeEEEeecCCCCCCCCcCCChhHHhhhcCCccceEeecceee
Q 039121 166 SMIVSEDRNILETFDRANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHVRKL 227 (232)
Q Consensus 166 ~~~~GG~~~il~~~~~e~~~~pl~~~~~~~~~s~LF~~lp~~l~~~l~~~~~~y~~Hs~gv~ 227 (232)
+.++||++.-. ...+.++.++.++. .+.||+++++.+ .++++|++++.
T Consensus 115 a~~lGG~v~~~--~~~e~G~~~v~~~~----~~~Lf~~l~~~~--------~v~~~H~~~V~ 162 (697)
T 2vxo_A 115 NKVFGGTVHKK--SVREDGVFNISVDN----TCSLFRGLQKEE--------VVLLTHGDSVD 162 (697)
T ss_dssp HHHTTCCBCC---------CEEEEECT----TSGGGTTCCSEE--------EECCCSSCCBS
T ss_pred HHHhCCeEeec--CCCccceEEEEecC----CChhhhcCCccC--------cceeeccccee
Confidence 99999996322 12455667777642 577999987543 57778988863
No 22
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.45 E-value=7.2e-14 Score=116.61 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCc--cCh--hHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSG--LYY--DIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~--~~~--~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.+++++|+++|+++++++.. + .++.+||||||||.+..+ .+. ....++++.+++. ++||||||+
T Consensus 16 ~~~~~~l~~~G~~~~~~~~~---~----~l~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~-----~~PilGIC~ 83 (200)
T 1ka9_H 16 RSAAKALEAAGFSVAVAQDP---K----AHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLER-----GLPFLGICV 83 (200)
T ss_dssp HHHHHHHHHTTCEEEEESST---T----SCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHT-----TCCEEECTH
T ss_pred HHHHHHHHHCCCeEEEecCh---H----HcccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHc-----CCeEEEEcH
Confidence 46788999999999888632 1 256899999998544211 111 1245566666655 599999999
Q ss_pred HHHHHHHH---HcC
Q 039121 161 GFELLSMI---VSE 171 (232)
Q Consensus 161 G~QlL~~~---~GG 171 (232)
|||+|+.+ +||
T Consensus 84 G~Qll~~~~~~~Gg 97 (200)
T 1ka9_H 84 GMQVLYEGSEEAPG 97 (200)
T ss_dssp HHHTTSSEETTSTT
T ss_pred HHHHHHHhccccCC
Confidence 99999998 574
No 23
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.41 E-value=1.8e-13 Score=133.34 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=63.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCc----cChhHHHHHHHHHHHhcCCCCCccEeehh
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSG----LYYDIVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~----~~~~~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
..++++++++.|+.+.+++++.+.+ +..+|||||+||+.... .+....+++++.+++. ++||||||
T Consensus 459 ~~~l~~~l~~~G~~v~Vv~~d~~~~-----~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~-----~iPiLGIC 528 (645)
T 3r75_A 459 TAMIAQQLSSLGLATEVCGVHDAVD-----LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDE-----GKPFMAVC 528 (645)
T ss_dssp HHHHHHHHHHTTCEEEEEETTCCCC-----GGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHH-----TCCEEEET
T ss_pred HHHHHHHHHHCCCEEEEEECCCccc-----ccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHC-----CCCEEEEC
Confidence 4689999999999999999876422 45799999999987321 1233456777877776 49999999
Q ss_pred HHHHHHHHHHcCcc
Q 039121 160 LGFELLSMIVSEDR 173 (232)
Q Consensus 160 lG~QlL~~~~GG~~ 173 (232)
+|||+|+.++||++
T Consensus 529 lG~QlLa~alGG~V 542 (645)
T 3r75_A 529 LSHQILNAILGIPL 542 (645)
T ss_dssp HHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhCCEE
Confidence 99999999999996
No 24
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.37 E-value=1.4e-13 Score=132.01 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=60.0
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhH-
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDI- 135 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~- 135 (232)
+|.|+|+.... + .. .+++++++++|+.+++++.. ++ ..++.+||||||||.+..+ ....
T Consensus 4 m~~I~Iid~~~-g------------~~-~~~~~~l~~~G~~~~vv~~~---~~--~~l~~~DglILpGgG~~~~-~~~~l 63 (555)
T 1jvn_A 4 MPVVHVIDVES-G------------NL-QSLTNAIEHLGYEVQLVKSP---KD--FNISGTSRLILPGVGNYGH-FVDNL 63 (555)
T ss_dssp SCEEEEECCSC-S------------CC-HHHHHHHHHTTCEEEEESSG---GG--CCSTTCSCEEEEECSCHHH-HHHHH
T ss_pred CCEEEEEECCC-C------------CH-HHHHHHHHHCCCEEEEECCc---cc--cccccCCEEEECCCCchHh-Hhhhh
Confidence 58999996421 1 11 37888999999999987632 22 2356899999999544211 1111
Q ss_pred ----HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHH
Q 039121 136 ----VEKIFKKILEKNDAGDHFPVYAICLGFELLSMIV 169 (232)
Q Consensus 136 ----~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~ 169 (232)
..+.++.+++. ++||||||+|||+|+.++
T Consensus 64 ~~~~~~~~i~~~~~~-----g~PiLGIC~G~QlL~~a~ 96 (555)
T 1jvn_A 64 FNRGFEKPIREYIES-----GKPIMGIXVGLQALFAGS 96 (555)
T ss_dssp HHTTCHHHHHHHHHT-----TCCEEEEEHHHHTTEEEE
T ss_pred hhccHHHHHHHHHHc-----CCcEEEEchhhhhhhhhh
Confidence 23455555544 599999999999999987
No 25
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.36 E-value=1.5e-13 Score=114.50 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=50.6
Q ss_pred HHHHHHHHhCC-----CeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCcc--Chh--HHHHHHHHHHHhcCCCCCccE
Q 039121 85 ASYVKFAESGG-----ARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGL--YYD--IVEKIFKKILEKNDAGDHFPV 155 (232)
Q Consensus 85 ~s~v~~l~~~G-----~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~--~~~--~~~~~~~~~l~~~~~~~~~PI 155 (232)
.+++++|+++| +++++++... . +.+||||||||.+.... +.. ...++++.++++ ++||
T Consensus 14 ~s~~~~l~~~G~~~~~~~~~~~~~~~-------~-~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~-----~~Pi 80 (201)
T 1gpw_B 14 MNLYRGVKRASENFEDVSIELVESPR-------N-DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVED-----ERYV 80 (201)
T ss_dssp HHHHHHHHHHSTTBSSCEEEEECSCC-------S-SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHT-----TCEE
T ss_pred HHHHHHHHHcCCCCCceEEEEECCCc-------c-cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHc-----CCeE
Confidence 57778899999 8888876421 1 47999999996442111 111 123455555544 5999
Q ss_pred eehhHHHHHHHHHHc
Q 039121 156 YAICLGFELLSMIVS 170 (232)
Q Consensus 156 LGIClG~QlL~~~~G 170 (232)
||||+|||+|+.++|
T Consensus 81 lGIC~G~Qll~~~~g 95 (201)
T 1gpw_B 81 VGVCLGMQLLFEESE 95 (201)
T ss_dssp EEETHHHHTTSSEET
T ss_pred EEEChhHHHHHHhhc
Confidence 999999999999987
No 26
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.35 E-value=2e-13 Score=115.76 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=65.3
Q ss_pred CCCCCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCc
Q 039121 51 DPSLNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSG 130 (232)
Q Consensus 51 ~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~ 130 (232)
.+.-+.++.|+|+..++ +| .+++++|+++|+++++++. .+ .++.+||||||||+....
T Consensus 17 ~~~~~~~~~I~il~~~~-------------~~--~~~~~~l~~~G~~~~~~~~---~~----~l~~~Dglil~GG~~~~~ 74 (219)
T 1q7r_A 17 NLYFQSNMKIGVLGLQG-------------AV--REHVRAIEACGAEAVIVKK---SE----QLEGLDGLVLPGGESTTM 74 (219)
T ss_dssp -CCCCCCCEEEEESCGG-------------GC--HHHHHHHHHTTCEEEEECS---GG----GGTTCSEEEECCCCHHHH
T ss_pred CCCCCCCCEEEEEeCCC-------------Cc--HHHHHHHHHCCCEEEEECC---HH----HHhhCCEEEECCCChHHH
Confidence 33335578999995422 12 2456889999999988864 22 256899999999975110
Q ss_pred -cC--hhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 131 -LY--YDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 131 -~~--~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
.+ .....++++.++++ ++||||||+|||+|+.++||++
T Consensus 75 ~~~~~~~~~~~~i~~~~~~-----~~PilGIC~G~QlL~~~~gg~~ 115 (219)
T 1q7r_A 75 RRLIDRYGLMEPLKQFAAA-----GKPMFGTCAGLILLAKRIVGYD 115 (219)
T ss_dssp HHHHHHTTCHHHHHHHHHT-----TCCEEEETTHHHHHEEEEESSC
T ss_pred HHHhhhhHHHHHHHHHHHc-----CCeEEEECHHHHHHHHHhCCCC
Confidence 00 01123556666554 5999999999999999999974
No 27
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.34 E-value=3.5e-13 Score=114.56 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=63.2
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC---CCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCC-Ccc
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESG---GARVIPLIFNEPEEILFEKLELVNGILYTGGWAK-SGL 131 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~---G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~-~~~ 131 (232)
.+++|||+...+. + .+|+++|+++ |+++++++. .++ ++.+||||||||+.. ...
T Consensus 2 ~~~~I~Il~~~~~-------------~--~~~~~~l~~~~~~G~~~~~~~~---~~~----l~~~dglil~GG~~~~~~~ 59 (227)
T 2abw_A 2 SEITIGVLSLQGD-------------F--EPHINHFIKLQIPSLNIIQVRN---VHD----LGLCDGLVIPGGESTTVRR 59 (227)
T ss_dssp CCEEEEEECTTSC-------------C--HHHHHHHHTTCCTTEEEEEECS---HHH----HHTCSEEEECCSCHHHHHH
T ss_pred CCcEEEEEeCCCC-------------c--HHHHHHHHHhccCCeEEEEEcC---ccc----cccCCEEEECCCcHHHHHH
Confidence 3678999976421 1 3678899999 998888753 232 467999999999741 111
Q ss_pred Chh----HHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 132 YYD----IVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 132 ~~~----~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
+.. ...+.++.++++ .++||||||+|||+|+.++||++
T Consensus 60 ~~~~d~~~~~~~i~~~~~~----~g~PilGIC~G~QlL~~~~gg~~ 101 (227)
T 2abw_A 60 CCAYENDTLYNALVHFIHV----LKKPIWGTCAGCILLSKNVENIK 101 (227)
T ss_dssp HTTHHHHHHHHHHHHHHHT----SCCCEEEETHHHHHTEEEEECCC
T ss_pred HHHHhHHHHHHHHHHHHHh----cCCEEEEECHHHHHHHHHhcCCc
Confidence 111 123445555543 04999999999999999999873
No 28
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.28 E-value=2.4e-12 Score=106.74 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCc-cCh--hHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSG-LYY--DIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~-~~~--~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
++.++++++|+++++++. .++ ++.+||||||||+.... .+. ....++++.++++ ++|+||||+||
T Consensus 15 ~~~~~l~~~g~~~~~~~~---~~~----l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~-----~~pilgIC~G~ 82 (196)
T 2nv0_A 15 EHIHAIEACGAAGLVVKR---PEQ----LNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQ-----GKPMFGTCAGL 82 (196)
T ss_dssp HHHHHHHHTTCEEEEECS---GGG----GGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHT-----TCCEEEETHHH
T ss_pred HHHHHHHHCCCEEEEeCC---hHH----HhhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHC-----CCcEEEECHHH
Confidence 345789999999888753 222 56799999999974110 110 1113455555554 59999999999
Q ss_pred HHHHHHHcCcc
Q 039121 163 ELLSMIVSEDR 173 (232)
Q Consensus 163 QlL~~~~GG~~ 173 (232)
|+|+.++||+.
T Consensus 83 q~l~~~~gg~~ 93 (196)
T 2nv0_A 83 IILAKEIAGSD 93 (196)
T ss_dssp HHHSBCCC---
T ss_pred HHHHHHhcCCC
Confidence 99999999873
No 29
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.28 E-value=5.1e-12 Score=120.89 Aligned_cols=107 Identities=19% Similarity=0.154 Sum_probs=69.7
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh---HHHHHhhcCCCEEEECCCCCCCcc
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE---EILFEKLELVNGILYTGGWAKSGL 131 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~---e~l~~~l~~~dGlIl~GG~~~~~~ 131 (232)
..++.||++...... .+.+.++ ..++.++..+.|+++.+++++.+. +++++.++.+||||||||++.. .
T Consensus 298 ~~~v~I~ivgkyv~l------~D~y~Sv-~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfGd~-~ 369 (550)
T 1vco_A 298 ERTVKIAIAGKYVKM------PDAYLSL-LEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVR-G 369 (550)
T ss_dssp SEEEEEEEEESCC---------CTTHHH-HHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSST-T
T ss_pred CCceEEcccCCeEEE------EecHHHH-HHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCCCc-c
Confidence 345789987653211 1112333 234555555677888887765421 2344557789999999998743 2
Q ss_pred ChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcccc
Q 039121 132 YYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNI 175 (232)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~i 175 (232)
. .....+++++++. ++|+||||+|||+|+.++||++..
T Consensus 370 ~-~g~i~~ir~a~e~-----~iPiLGICLGmQlL~~a~Gg~v~~ 407 (550)
T 1vco_A 370 I-EGKVRAAQYARER-----KIPYLGICLGLQIAVIEFARNVAG 407 (550)
T ss_dssp H-HHHHHHHHHHHHT-----TCCEEEETHHHHHHHHHHHHHTSC
T ss_pred h-hhhHHHHHHHHHC-----CCcEEEECcCHHHHHHHhCccccc
Confidence 2 2234566766655 599999999999999999998643
No 30
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.21 E-value=1.1e-11 Score=109.70 Aligned_cols=98 Identities=18% Similarity=0.172 Sum_probs=65.0
Q ss_pred CCEEEEeCCC-CCCCCCCcCCccchhhhHHHHHHHHHhCCC----eEEEEeCCCC----------hHHHHH---hhcCCC
Q 039121 57 RPVIGILSHP-GDGASGRLSNATNASYISASYVKFAESGGA----RVIPLIFNEP----------EEILFE---KLELVN 118 (232)
Q Consensus 57 ~PvIGI~~~~-~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~----~vv~i~~~~~----------~e~l~~---~l~~~d 118 (232)
+..|+|+... +. ..+|. +++++|+++|+ +++++.++.. .+++.+ .++.+|
T Consensus 25 ~~~Iavv~d~~~~----------~~s~~--si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 92 (289)
T 2v4u_A 25 ICSIALVGKYTKL----------RDCYA--SVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKAD 92 (289)
T ss_dssp EEEEEEEESCSSC----------CGGGH--HHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCS
T ss_pred ceEEEEEecCcCC----------CccHH--HHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCC
Confidence 4579998543 21 12243 77788888765 4455544321 111111 366899
Q ss_pred EEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 119 GILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 119 GlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
|||||||++. .......++++.+++. ++||||||+|||+|+.++||++
T Consensus 93 giil~GG~~~--~~~~~~~~~i~~~~~~-----~~PilGIC~G~Q~l~~a~Gg~v 140 (289)
T 2v4u_A 93 GILVPGGFGI--RGTLGKLQAISWARTK-----KIPFLGVXLGMQLAVIEFARNC 140 (289)
T ss_dssp EEEECSCCSS--TTHHHHHHHHHHHHHT-----TCCEEEETHHHHHHHHHHHHHH
T ss_pred EEEecCCCCc--hhHHHHHHHHHHHHHc-----CCcEEEECccHHHHHHHHhccc
Confidence 9999999874 2233455666766655 5999999999999999999986
No 31
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.14 E-value=4.1e-11 Score=100.58 Aligned_cols=73 Identities=21% Similarity=0.362 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhH------HHHHHHHHHHhcCCCCCccEeeh
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDI------VEKIFKKILEKNDAGDHFPVYAI 158 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~------~~~~~~~~l~~~~~~~~~PILGI 158 (232)
.++.++++++|+++++++. .++ ++.+|+||||||.. ..+.. ..+.++.++++ ++|||||
T Consensus 33 ~~~~~~l~~~g~~~~~~~~---~~~----l~~~d~iil~GG~~---~~~~~~~~~~~~~~~i~~~~~~-----g~PilGI 97 (208)
T 2iss_D 33 REHVEALHKLGVETLIVKL---PEQ----LDMVDGLILPGGES---TTMIRILKEMDMDEKLVERINN-----GLPVFAT 97 (208)
T ss_dssp HHHHHHHHHTTCEEEEECS---GGG----GGGCSEEEECSSCH---HHHHHHHHHTTCHHHHHHHHHT-----TCCEEEE
T ss_pred HHHHHHHHHCCCEEEEeCC---hHH----HhhCCEEEECCCcH---HHHHhhhhhhhHHHHHHHHHHC-----CCeEEEE
Confidence 3567789999999888753 222 56799999999942 11211 23455555544 5999999
Q ss_pred hHHHHHHHHHHcCc
Q 039121 159 CLGFELLSMIVSED 172 (232)
Q Consensus 159 ClG~QlL~~~~GG~ 172 (232)
|+|||+|+.++||+
T Consensus 98 C~G~QlL~~~~gg~ 111 (208)
T 2iss_D 98 CAGVILLAKRIKNY 111 (208)
T ss_dssp THHHHHHEEEEC--
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999985
No 32
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.13 E-value=4.1e-11 Score=114.55 Aligned_cols=99 Identities=20% Similarity=0.305 Sum_probs=67.3
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCC----eEEEEeCCCChHHHH----HhhcCCCEEEECCCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGA----RVIPLIFNEPEEILF----EKLELVNGILYTGGWA 127 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~----~vv~i~~~~~~e~l~----~~l~~~dGlIl~GG~~ 127 (232)
..+.||++...-. ..+.| .|++++|+++|+ ++.+++++ .+++. +.++.+||||||||++
T Consensus 288 ~~v~i~~vGkyv~---------l~D~y--~Si~~aL~~~G~~~~~~V~i~~~d--~e~i~~~~~~~l~~~DGIilsGGpg 354 (545)
T 1s1m_A 288 SEVTIGMVGKYIE---------LPDAY--KSVIEALKHGGLKNRVSVNIKLID--SQDVETRGVEILKGLDAILVPGGFG 354 (545)
T ss_dssp EEEEEEEEESSCS---------SGGGG--HHHHHHHHHHHHHHTEEEEEEEEE--HHHHHHHCTTTTTTCSEEEECCCCS
T ss_pred CeEEeCCcCCeEE---------EEEHH--HHHHHHHHHhCcccCCeEEEccCC--HHHhhhhhhhhhhcCCEEEECCCCC
Confidence 3567898764321 12334 467778887775 45565553 33333 3367899999999987
Q ss_pred CCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCccc
Q 039121 128 KSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRN 174 (232)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~ 174 (232)
... .....++++.+++. ++|+||||+|||+|+.++||++.
T Consensus 355 ~~~--~~g~~~~i~~a~~~-----~~PiLGIClG~Qll~va~Gg~v~ 394 (545)
T 1s1m_A 355 YRG--VEGMITTARFAREN-----NIPYLGICLGMQVALIDYARHVA 394 (545)
T ss_dssp STT--HHHHHHHHHHHHHT-----TCCEEEETHHHHHHHHHHHHHHH
T ss_pred Ccc--chhhHHHHHHHHHC-----CCcEEEECChHHHHHHHhCCcee
Confidence 422 23344666777654 59999999999999999999864
No 33
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.11 E-value=3.8e-10 Score=100.68 Aligned_cols=86 Identities=14% Similarity=0.131 Sum_probs=61.8
Q ss_pred hcCCCEEEECCCCCC-----CccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcccccccccCCCceEeE
Q 039121 114 LELVNGILYTGGWAK-----SGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDRANQASTL 188 (232)
Q Consensus 114 l~~~dGlIl~GG~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl 188 (232)
.+.+||+|++||+.. +..|..+++++++++.+.. +|+||||+|+|++..++||... .....++-+..++
T Consensus 97 ~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~-----~~~lgIC~GaQ~~l~~~~G~~k-~~~~~K~~Gv~~~ 170 (301)
T 2vdj_A 97 NEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNV-----TSTLHICWGAQAGLYHHYGVQK-YPLKEKMFGVFEH 170 (301)
T ss_dssp TSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHE-----EEEEEETHHHHHHHHHHHCCCC-EEEEEEEEEEEEE
T ss_pred ccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcC-----CcEEEEcHHHHHHHHHhCCCcc-ccCCCCEEEEEEE
Confidence 367999999999951 2356678889999998775 9999999999998888877421 1222334455566
Q ss_pred EEeecCCCCCCCCcCCChhH
Q 039121 189 QFVKNINIEGTLFQRFPPEL 208 (232)
Q Consensus 189 ~~~~~~~~~s~LF~~lp~~l 208 (232)
..+. . .++||+++++.+
T Consensus 171 ~~~~--~-~~pL~~g~~~~f 187 (301)
T 2vdj_A 171 EVRE--Q-HVKLLQGFDELF 187 (301)
T ss_dssp EECC--S-SCGGGTTCCSEE
T ss_pred EecC--C-CCccccCCCCce
Confidence 5542 2 678999887654
No 34
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.08 E-value=3.9e-10 Score=101.04 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=61.4
Q ss_pred cCCCEEEECCCCCC-----CccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcccccccccCCCceEeEE
Q 039121 115 ELVNGILYTGGWAK-----SGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDRANQASTLQ 189 (232)
Q Consensus 115 ~~~dGlIl~GG~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~~il~~~~~e~~~~pl~ 189 (232)
+.+||+|++||+.. +..|..+++++++++.+.. +|+||||+|+|++..++||... .....++-+..++.
T Consensus 110 ~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~~~-----~p~LGIC~GaQ~~l~~~~G~~k-~~~~~K~~Gv~~~~ 183 (312)
T 2h2w_A 110 RKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNV-----YSTMFICWAAQAGLYYFYGIPK-YELPQKLSGVYKHR 183 (312)
T ss_dssp CCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHE-----EEEEEETHHHHHHHHHHHCCCC-EEEEEEEEEEEEEE
T ss_pred cCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHHcC-----CcEEEECHHHHHHHHHhCCCcc-ccCCCCEEEEEEEE
Confidence 57999999999951 2356678889999998764 9999999999998888888421 22223445556665
Q ss_pred EeecCCCCCCCCcCCChhH
Q 039121 190 FVKNINIEGTLFQRFPPEL 208 (232)
Q Consensus 190 ~~~~~~~~s~LF~~lp~~l 208 (232)
.+. .++||+++++.+
T Consensus 184 ~~~----~~pL~~g~~~~f 198 (312)
T 2h2w_A 184 VAK----DSVLFRGHDDFF 198 (312)
T ss_dssp ESS----CCGGGTTCCSEE
T ss_pred EcC----CCccccCCCCce
Confidence 553 577998887654
No 35
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.01 E-value=1.1e-09 Score=103.98 Aligned_cols=99 Identities=24% Similarity=0.292 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC----CCeEEEEeCCCCh---HHH--HHhhcCCCEEEECCCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESG----GARVIPLIFNEPE---EIL--FEKLELVNGILYTGGWA 127 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~----G~~vv~i~~~~~~---e~l--~~~l~~~dGlIl~GG~~ 127 (232)
...||++.-... ..++|. |+.++|+++ +.++.+.+.+... +.. .+.++.+||||+|||+.
T Consensus 293 ~v~IalVGKY~~---------l~DaY~--Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G 361 (535)
T 3nva_A 293 TINIALVGKYTK---------LKDSYI--SIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFG 361 (535)
T ss_dssp EEEEEEEESCTT---------SGGGGH--HHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCS
T ss_pred eeEEEEEecCcC---------CchhHH--HHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCC
Confidence 456998887532 245564 666777665 5677666654321 000 23578899999999987
Q ss_pred CCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCcc
Q 039121 128 KSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDR 173 (232)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~~ 173 (232)
.. . .....+.++++++. ++|+||||+|||+|+.++||++
T Consensus 362 ~~-~-~~g~i~~ir~a~~~-----~~PiLGIClG~Qll~va~Gg~v 400 (535)
T 3nva_A 362 SR-G-AEGKIKAIKYAREH-----NIPFLGICFGFQLSIVEFARDV 400 (535)
T ss_dssp ST-T-HHHHHHHHHHHHHH-----TCCEEEETHHHHHHHHHHHHTT
T ss_pred Cc-c-HHHHHHHHHHHHHc-----CCcEEEECcchhHHHHHhhccc
Confidence 32 2 23344667777766 4999999999999999999986
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=98.79 E-value=8.4e-09 Score=106.97 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=63.9
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChh
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYD 134 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~ 134 (232)
..||.|+|+..++.++ ..++.++++.+|+.++.++.+. ...-++.++.+|+||||||... +.+.+
T Consensus 1045 ~~~pkVaIi~~~G~N~-------------~~~~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~d~lvlPGGfSy-gD~l~ 1109 (1303)
T 3ugj_A 1045 GARPKVAVLREQGVNS-------------HVEMAAAFHRAGFDAIDVHMSD-LLGGRIGLGNFHALVACGGFSY-GDVLG 1109 (1303)
T ss_dssp TCCCEEEEEECTTCCC-------------HHHHHHHHHHTTCEEEEEEHHH-HHTTSCCGGGCSEEEECCSCGG-GGTTS
T ss_pred CCCCEEEEEecCCcCC-------------HHHHHHHHHHhCCceEEEeecc-cccCcccHhhCCEEEECCCCcc-hhhhc
Confidence 3589999999988653 3577889999999998876421 0000123678999999998642 11111
Q ss_pred -------------HHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 135 -------------IVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 135 -------------~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
..++.++..+. ++++|+||||+|||+|+..
T Consensus 1110 ~g~~~a~~~l~~~~l~~~l~~~~~----~~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A 1110 AGEGWAKSILFNHRVRDEFETFFH----RPQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp TTHHHHHHHHTSHHHHHHHHHHHH----SSSCEEEEETHHHHHHHTT
T ss_pred cchhHHHHHHhchhHHHHHHHHHH----hCCCcEEEECHHHHHHHHh
Confidence 12233333332 3479999999999999986
No 37
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.53 E-value=4.9e-08 Score=82.35 Aligned_cols=99 Identities=17% Similarity=0.004 Sum_probs=65.2
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCC-CChHHHHHhhcCCCEEEECCCCCCCc--cCh
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFN-EPEEILFEKLELVNGILYTGGWAKSG--LYY 133 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~-~~~e~l~~~l~~~dGlIl~GG~~~~~--~~~ 133 (232)
.|.|++........ ..+.|+ +++.+++++.|+++..+... .+.++..+.++++|+|+++||....- .+.
T Consensus 27 ~~~i~~Ip~As~~~-------~~~~~~-~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVE-------EVTFYV-EAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGC-------SCCHHH-HHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCC-------CHHHHH-HHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHHHHHHHHH
Confidence 48888886543210 123464 58899999999988776432 24555556678899999999876211 000
Q ss_pred -hHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 134 -DIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 134 -~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
....+.++.++++ ++|++|||.|||+|+..
T Consensus 99 ~~gl~~~l~~~~~~-----G~p~~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 99 RTGADKLILEEIAA-----GKLYIGESAGAVITSPN 129 (206)
T ss_dssp HHTHHHHHHHHHHT-----TCEEEEETHHHHTTSSB
T ss_pred HCChHHHHHHHHHc-----CCeEEEECHHHHHhccc
Confidence 1123445555544 69999999999999863
No 38
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.39 E-value=1.7e-07 Score=79.95 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=62.6
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhH
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDI 135 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~ 135 (232)
.++.|.|...-... .....|+ +++.+++++.|++++.+....+. .+.++++|+|++|||... ...+.
T Consensus 30 ~~~~i~iI~~a~~~-------~~~~~~~-~~~~~al~~lG~~~~~v~~~~d~---~~~l~~ad~I~lpGG~~~--~~~~~ 96 (229)
T 1fy2_A 30 GRRSAVFIPFAGVT-------QTWDEYT-DKTAEVLAPLGVNVTGIHRVADP---LAAIEKAEIIIVGGGNTF--QLLKE 96 (229)
T ss_dssp TCCEEEEECTTCCS-------SCHHHHH-HHHHHHHGGGTCEEEETTSSSCH---HHHHHHCSEEEECCSCHH--HHHHH
T ss_pred CCCeEEEEECCCCC-------CCHHHHH-HHHHHHHHHCCCEEEEEeccccH---HHHHhcCCEEEECCCcHH--HHHHH
Confidence 45888888654311 1134454 68889999999988776432222 234678999999998762 11111
Q ss_pred -----HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHH
Q 039121 136 -----VEKIFKKILEKNDAGDHFPVYAICLGFELLSMIV 169 (232)
Q Consensus 136 -----~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~ 169 (232)
..+.++.++++ ++|++|||.|||+|+...
T Consensus 97 l~~~gl~~~l~~~~~~-----G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 97 SRERGLLAPMADRVKR-----GALYIGWSAGANLACPTI 130 (229)
T ss_dssp HHHTTCHHHHHHHHHT-----TCEEEEETHHHHHTSSBS
T ss_pred HHHCChHHHHHHHHHc-----CCEEEEECHHHHhhcccc
Confidence 22445555443 599999999999998843
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=97.82 E-value=8.3e-05 Score=61.11 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=61.3
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh---------H-----HHHH-hhcCCCEEE
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE---------E-----ILFE-KLELVNGIL 121 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~---------e-----~l~~-~l~~~dGlI 121 (232)
...|+|+..++-. ...+ ....+.++++|+++.++.....+ . .+.+ ..+.+|+||
T Consensus 23 ~~kV~ill~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~li 91 (193)
T 1oi4_A 23 SKKIAVLITDEFE---------DSEF--TSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALL 91 (193)
T ss_dssp CCEEEEECCTTBC---------THHH--HHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEE
T ss_pred CCEEEEEECCCCC---------HHHH--HHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEE
Confidence 4579999886421 1112 34567889999998887654321 0 1111 124689999
Q ss_pred ECCCCCCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 122 YTGGWAKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 122 l~GG~~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+|||..... .......++++.+.++ ++||.|||.|.|+|+.+
T Consensus 92 vpGG~~~~~l~~~~~l~~~l~~~~~~-----gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 92 LPGGHSPDYLRGDNRFVTFTRDFVNS-----GKPVFAICHGPQLLISA 134 (193)
T ss_dssp ECCBTHHHHHTTSHHHHHHHHHHHHT-----TCCEEEETTTHHHHHHH
T ss_pred ECCCcCHHHhhhCHHHHHHHHHHHHc-----CCEEEEECHHHHHHHHC
Confidence 999954211 1113455666666655 59999999999999986
No 40
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=97.10 E-value=0.0011 Score=52.69 Aligned_cols=95 Identities=19% Similarity=0.192 Sum_probs=58.9
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh------------HHHHHh-hcCCCEEEECC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE------------EILFEK-LELVNGILYTG 124 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~------------e~l~~~-l~~~dGlIl~G 124 (232)
..|+|+..++-. ...+ ....+.++.+|+++.++..+... ..+.+. ...+|.|++||
T Consensus 3 ~ki~il~~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG 71 (168)
T 3l18_A 3 MKVLFLSADGFE---------DLEL--IYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPG 71 (168)
T ss_dssp CEEEEECCTTBC---------HHHH--HHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECC
T ss_pred cEEEEEeCCCcc---------HHHH--HHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECC
Confidence 358888776421 1122 24567788999988877653210 001111 13589999999
Q ss_pred CCCCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 125 GWAKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 125 G~~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
|..... .......++++.+.++ ++||.+||-|.++|+.+
T Consensus 72 G~~~~~~~~~~~l~~~l~~~~~~-----~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 72 GKAPEIVRLNEKAVMITRRMFED-----DKPVASICHGPQILISA 111 (168)
T ss_dssp BSHHHHHTTCHHHHHHHHHHHHT-----TCCEEEETTTHHHHHHT
T ss_pred CcCHHHhccCHHHHHHHHHHHHC-----CCEEEEECHhHHHHHHC
Confidence 974211 1123355666666655 59999999999999985
No 41
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=97.06 E-value=0.00088 Score=54.72 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=60.9
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC------------hHHHHH-hhcCCCEEEE
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP------------EEILFE-KLELVNGILY 122 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~------------~e~l~~-~l~~~dGlIl 122 (232)
.+.+|-|+...+- +...++ .-++.|+++|+++.++..... +..+.+ ..+.+|+|++
T Consensus 7 t~~~v~il~~~gF---------e~~E~~--~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~lii 75 (177)
T 4hcj_A 7 TNNILYVMSGQNF---------QDEEYF--ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVF 75 (177)
T ss_dssp CCEEEEECCSEEE---------CHHHHH--HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEE
T ss_pred CCCEEEEECCCCc---------cHHHHH--HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEE
Confidence 3567788766431 122332 345678999999988765331 011221 1346899999
Q ss_pred CCCCCCCccC-hhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 123 TGGWAKSGLY-YDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 123 ~GG~~~~~~~-~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
|||....... .....++++.+.++ ++||.+||-|-++|+.+
T Consensus 76 PGG~g~~~l~~~~~~~~~l~~~~~~-----~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 76 VGGIGCITLWDDWRTQGLAKLFLDN-----QKIVAGIGSGVVIMANA 117 (177)
T ss_dssp CCSGGGGGGTTCHHHHHHHHHHHHT-----TCEEEEETTHHHHHHHT
T ss_pred CCCccHHHHhhCHHHHHHHHHHHHh-----CCEEEEecccHHHHHHC
Confidence 9997521111 12355667766665 59999999999999875
No 42
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=97.04 E-value=0.00082 Score=55.02 Aligned_cols=96 Identities=15% Similarity=0.080 Sum_probs=60.6
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC-------------hHHHHHh--hcCCCEEE
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP-------------EEILFEK--LELVNGIL 121 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~-------------~e~l~~~--l~~~dGlI 121 (232)
...|+|+..++-. ...+ ...++.++.+|+++.++..+.. ...+.+. ...+|.||
T Consensus 3 ~~~v~ill~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~li 71 (197)
T 2rk3_A 3 SKRALVILAKGAE---------EMET--VIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVV 71 (197)
T ss_dssp CCEEEEEECTTCC---------HHHH--HHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEE
T ss_pred CCEEEEEECCCCc---------HHHH--HHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEE
Confidence 4568888875421 1222 2456788999999888764321 1122221 25789999
Q ss_pred ECCCCC-CC-ccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 122 YTGGWA-KS-GLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 122 l~GG~~-~~-~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+|||.. .. -.......++++.+.++ ++||.+||-|-++|+.+
T Consensus 72 vpGG~~~~~~l~~~~~~~~~l~~~~~~-----gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 72 LPGGNLGAQNLSESAAVKEILKEQENR-----KGLIATICAGPTALLAH 115 (197)
T ss_dssp ECCCHHHHHHHHHCHHHHHHHHHHHHT-----TCEEEEETTTHHHHHHT
T ss_pred ECCCchhHHHhhhCHHHHHHHHHHHHc-----CCEEEEECHHHHHHHHC
Confidence 999963 11 01112345666666554 59999999999999985
No 43
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=96.96 E-value=0.0018 Score=54.64 Aligned_cols=82 Identities=11% Similarity=0.182 Sum_probs=54.0
Q ss_pred HHHHHHHhCCCeEEEEeCCCCh------------------------------HHHHHh-hcCCCEEEECCCCCCC---cc
Q 039121 86 SYVKFAESGGARVIPLIFNEPE------------------------------EILFEK-LELVNGILYTGGWAKS---GL 131 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~------------------------------e~l~~~-l~~~dGlIl~GG~~~~---~~ 131 (232)
..++.|+++|+++.++..+... ..+.+. .+.+|.||+|||.... ..
T Consensus 29 ~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~~~~~~D~livpGG~~~~~~~~~ 108 (232)
T 1vhq_A 29 LTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSN 108 (232)
T ss_dssp HHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBC
T ss_pred HHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHcCcccCCEEEECCCcchHHHHhh
Confidence 3456788999999887643210 111111 2468999999996520 00
Q ss_pred ---------ChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHc-Cc
Q 039121 132 ---------YYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVS-ED 172 (232)
Q Consensus 132 ---------~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~G-G~ 172 (232)
......++++.+.++ ++||.+||-|-++|+.++. |+
T Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~~~-----gk~vaaIC~G~~~La~aL~~Gr 154 (232)
T 1vhq_A 109 FASLGSECTVDRELKALAQAMHQA-----GKPLGFMCIAPAMLPKIFDFPL 154 (232)
T ss_dssp HHHHGGGCCBCHHHHHHHHHHHHT-----TCCEEEETTGGGGHHHHCSSCC
T ss_pred hhccccccccCHHHHHHHHHHHHc-----CCEEEEECHHHHHHHHHhcCCC
Confidence 123455667776665 5999999999999999876 64
No 44
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=96.93 E-value=0.0019 Score=52.27 Aligned_cols=97 Identities=22% Similarity=0.227 Sum_probs=59.2
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh-----------------HHHHHh-hcCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE-----------------EILFEK-LELV 117 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~-----------------e~l~~~-l~~~ 117 (232)
....|+|+..++-. ...+ ....+.++.+|+++..+..+..+ ..+.+. .+.+
T Consensus 8 ~~~~v~il~~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~ 76 (190)
T 2vrn_A 8 TGKKIAILAADGVE---------EIEL--TSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDY 76 (190)
T ss_dssp TTCEEEEECCTTCB---------HHHH--HHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGC
T ss_pred CCCEEEEEeCCCCC---------HHHH--HHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhC
Confidence 34579998775421 1122 23456788899888776543210 011111 1468
Q ss_pred CEEEECCCC-CCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 118 NGILYTGGW-AKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 118 dGlIl~GG~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
|.||+|||. .... .......++++.+.++ ++||.+||-|.++|+.+
T Consensus 77 D~livpGG~~~~~~~~~~~~l~~~l~~~~~~-----gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 77 DGLLLPGGTVNPDKLRLEEGAMKFVRDMYDA-----GKPIAAICHGPWSLSET 124 (190)
T ss_dssp SEEEECCCTHHHHHHTTCHHHHHHHHHHHHT-----TCCEEEC-CTTHHHHHT
T ss_pred CEEEECCCchhHHHHhhCHHHHHHHHHHHHc-----CCEEEEECHhHHHHHhC
Confidence 999999996 3111 1123455677776665 59999999999999985
No 45
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=96.78 E-value=0.0066 Score=50.40 Aligned_cols=96 Identities=18% Similarity=0.065 Sum_probs=58.9
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHH--------hCCCeEEEEeCCCC------------hHHHHHh-hc
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAE--------SGGARVIPLIFNEP------------EEILFEK-LE 115 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~--------~~G~~vv~i~~~~~------------~e~l~~~-l~ 115 (232)
.+.|+|+..++-.. ..+ ...++.++ +.|+++..+..+.. ...+.+. .+
T Consensus 5 m~~v~ill~~g~~~---------~e~--~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~ 73 (212)
T 3efe_A 5 TKKAFLYVFNTMSD---------WEY--GYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLE 73 (212)
T ss_dssp CCCEEEEECTTCCT---------TTT--HHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCC
T ss_pred ccEEEEEECCCccH---------HHH--HHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCcc
Confidence 45688888765321 111 23445566 56777777654321 0011221 12
Q ss_pred CCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 116 LVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 116 ~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.+|.||+|||............++++.+.++ +++|.+||-|-.+|+.+
T Consensus 74 ~~D~livpGG~~~~~~~~~~l~~~l~~~~~~-----gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 74 SKDLLILPGGTTWSEEIHQPILERIGQALKI-----GTIVAAICGATDALANM 121 (212)
T ss_dssp TTCEEEECCCSCTTSGGGHHHHHHHHHHHHH-----TCEEEEETHHHHHHHHT
T ss_pred CCCEEEECCCCccccccCHHHHHHHHHHHHC-----CCEEEEEcHHHHHHHHc
Confidence 7899999999763222223455677777665 49999999999999875
No 46
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=96.61 E-value=0.0026 Score=52.52 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=59.2
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC---------------hHHHHHh-hcCCCEEE
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP---------------EEILFEK-LELVNGIL 121 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~---------------~e~l~~~-l~~~dGlI 121 (232)
..|+|+..++-. ...+ ...++.++.+|+++.++..+.. ...+.+. .+.+|.||
T Consensus 3 ~kV~ill~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~li 71 (205)
T 2ab0_A 3 ASALVCLAPGSE---------ETEA--VTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIV 71 (205)
T ss_dssp CEEEEEECTTCC---------HHHH--HHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEE
T ss_pred cEEEEEEcCCCc---------HHHH--HHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEE
Confidence 357888775421 1122 2456788999999887765321 1122221 25789999
Q ss_pred ECCCCC-CCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHH-HHHHHH
Q 039121 122 YTGGWA-KSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGF-ELLSMI 168 (232)
Q Consensus 122 l~GG~~-~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~-QlL~~~ 168 (232)
+|||.. ... .......++++.+.++ ++||.+||-|- ++|+.+
T Consensus 72 vpGG~~~~~~l~~~~~l~~~l~~~~~~-----gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 72 LPGGIKGAECFRDSTLLVETVKQFHRS-----GRIVAAICAAPATVLVPH 116 (205)
T ss_dssp ECCCHHHHHHHHHCHHHHHHHHHHHHT-----TCEEEEETHHHHHHTTTT
T ss_pred ECCCcccHHHhccCHHHHHHHHHHHHc-----CCEEEEECHhHHHHHHHC
Confidence 999963 110 1112355666666655 59999999999 999874
No 47
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=96.45 E-value=0.031 Score=54.64 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=62.4
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh---HHHHH-hhcCCCEEEECCCCCCC---
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE---EILFE-KLELVNGILYTGGWAKS--- 129 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~---e~l~~-~l~~~dGlIl~GG~~~~--- 129 (232)
...|+|+...++ . +... ....+++|+++|+.+.+|-..... ..+.. ....+|+||||||....
T Consensus 537 grKVaILvadG~-f-------E~~E--l~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~ 606 (688)
T 3ej6_A 537 TLRVGVLSTTKG-G-------SLDK--AKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSG 606 (688)
T ss_dssp TCEEEEECCSSS-S-------HHHH--HHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTST
T ss_pred CCEEEEEccCCC-c-------cHHH--HHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCccccccc
Confidence 346899877441 1 1111 235678899999999998653310 01111 12368999999996521
Q ss_pred ---ccCh---hHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 130 ---GLYY---DIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 130 ---~~~~---~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+..+ ....++++.+.+. +|||-+||-|-++|..+
T Consensus 607 ~~~~d~Lr~~~~a~~fV~e~~~h-----gKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 607 KGAMSPLFPAGRPSQILTDGYRW-----GKPVAAVGSAKKALQSI 646 (688)
T ss_dssp TTTCCTTSCTTHHHHHHHHHHHT-----TCCEEEEGGGHHHHHHT
T ss_pred ccchhhhccCHHHHHHHHHHHHc-----CCEEEEeCccHHHHHHc
Confidence 1111 3466777777776 49999999999999875
No 48
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=96.42 E-value=0.0043 Score=50.34 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=59.5
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC-Ch------------HHHHHh-hcCCCEEE
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE-PE------------EILFEK-LELVNGIL 121 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~------------e~l~~~-l~~~dGlI 121 (232)
+...|+|+..++-. ...+ ...++.++++|.++.++..+. .+ ..+.+. ...+|.|+
T Consensus 4 m~kkv~ill~~g~~---------~~e~--~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~li 72 (190)
T 4e08_A 4 MSKSALVILAPGAE---------EMEF--IIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVV 72 (190)
T ss_dssp CCCEEEEEECTTCC---------HHHH--HHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEE
T ss_pred CCcEEEEEECCCch---------HHHH--HHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEE
Confidence 34567887765421 1222 245678899999998886543 10 012221 13589999
Q ss_pred ECCCCC-CCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 122 YTGGWA-KSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 122 l~GG~~-~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+|||.. ... .......++++.+.++ ++||.+||-|-++|+.+
T Consensus 73 vpGG~~~~~~~~~~~~~~~~l~~~~~~-----~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 73 LPGGLGGSNAMGESSLVGDLLRSQESG-----GGLIAAICAAPTVLAKH 116 (190)
T ss_dssp ECCCHHHHHHHHHCHHHHHHHHHHHHT-----TCEEEEETTTHHHHHHT
T ss_pred ECCCChHHHHhhhCHHHHHHHHHHHHC-----CCEEEEECHHHHHHHHC
Confidence 999942 110 0112345666666554 59999999999999875
No 49
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.98 E-value=0.0051 Score=49.10 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=34.8
Q ss_pred cCCCEEEECCC--C-CCCcc----ChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 115 ELVNGILYTGG--W-AKSGL----YYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 115 ~~~dGlIl~GG--~-~~~~~----~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+.+|.||+||| . ..... ......++++.+.++ ++||.+||-|.++|+.+
T Consensus 65 ~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~-----gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 65 DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEK-----GKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHT-----TCEEEEETTHHHHHHHT
T ss_pred ccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHC-----CCEEEEECHHHHHHHHC
Confidence 57899999999 4 32111 122345666666655 59999999999999975
No 50
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=95.96 E-value=0.0099 Score=49.36 Aligned_cols=95 Identities=15% Similarity=0.053 Sum_probs=58.6
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC-CCeEEEEeCCCC-----------hHHHHHhhcCCCEEEECC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESG-GARVIPLIFNEP-----------EEILFEKLELVNGILYTG 124 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~-G~~vv~i~~~~~-----------~e~l~~~l~~~dGlIl~G 124 (232)
...|+|+..++-.. ... ....+.++++ |.++.++..+.. ...+.+..+.+|.|++||
T Consensus 3 m~kV~ill~~g~~~---------~E~--~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpG 71 (206)
T 3f5d_A 3 LKKALFLILDQYAD---------WEG--VYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIG 71 (206)
T ss_dssp CEEEEEECCSSBCT---------TTS--HHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECC
T ss_pred ccEEEEEEcCCCcH---------HHH--HHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcC
Confidence 45688887765321 111 1344567666 777776654321 011222223689999999
Q ss_pred CCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 125 GWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 125 G~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
|..... ......++++.+.++ +++|.+||-|-++|+.+
T Consensus 72 G~~~~~-~~~~l~~~l~~~~~~-----gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 72 GDSWSN-DNKKLLHFVKTAFQK-----NIPIAAICGAVDFLAKN 109 (206)
T ss_dssp BSCCCC-CCHHHHHHHHHHHHT-----TCCEEEETHHHHHHHHT
T ss_pred CCChhh-cCHHHHHHHHHHHHc-----CCEEEEECHHHHHHHHc
Confidence 975322 333455667766655 59999999999999985
No 51
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=95.93 E-value=0.013 Score=52.89 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=60.8
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh----------------------------
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE---------------------------- 107 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~---------------------------- 107 (232)
+...|+|+..++- ....+ ...++.|+++|+++.++..+..+
T Consensus 11 ~~~kv~ill~dg~---------e~~E~--~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 79 (396)
T 3uk7_A 11 NSRTVLILCGDYM---------EDYEV--MVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLN 79 (396)
T ss_dssp CCCEEEEECCTTE---------EHHHH--HHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECC
T ss_pred cCCeEEEEeCCCc---------cHHHH--HHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeecc
Confidence 3467899886542 11122 34567899999999887654210
Q ss_pred HHHHHh-hcCCCEEEECCCCCCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 108 EILFEK-LELVNGILYTGGWAKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 108 e~l~~~-l~~~dGlIl~GG~~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
..+.+. .+.+|.|++|||..... .......++++.+.++ ++||.+||-|-++|+.+
T Consensus 80 ~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~-----~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 80 ATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRS-----GKPIASICHGQLILAAA 137 (396)
T ss_dssp SCGGGCCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHT-----TCCEEEETTTHHHHHHT
T ss_pred CChhhcCcccCCEEEECCCcchhhcccCHHHHHHHHHHHHc-----CCEEEEECchHHHHHhc
Confidence 011111 24689999999964110 1112355666666655 59999999999999975
No 52
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=95.93 E-value=0.0088 Score=52.71 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=62.5
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCC-eEEEEeCCC----ChHHHHHhhcCCCEEEECCCCCCC--
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGA-RVIPLIFNE----PEEILFEKLELVNGILYTGGWAKS-- 129 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~-~vv~i~~~~----~~e~l~~~l~~~dGlIl~GG~~~~-- 129 (232)
+|.|.+....... ...|. ..|.+++++.|+ .+..+.... +.+++.+.++++|+|+++||....
T Consensus 56 ~~~I~~IptAs~~---------~~~~~-~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~ 125 (291)
T 3en0_A 56 DAIIGIIPSASRE---------PLLIG-ERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLC 125 (291)
T ss_dssp GCEEEEECTTCSS---------HHHHH-HHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHH
T ss_pred CCeEEEEeCCCCC---------hHHHH-HHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHH
Confidence 4788888765421 23454 467889999999 566665421 223445567899999999998610
Q ss_pred ccCh-hHHHHHHHHHHHhcCCCCC-ccEeehhHHHHHHHH
Q 039121 130 GLYY-DIVEKIFKKILEKNDAGDH-FPVYAICLGFELLSM 167 (232)
Q Consensus 130 ~~~~-~~~~~~~~~~l~~~~~~~~-~PILGIClG~QlL~~ 167 (232)
..+. ..+.+.++.++++ + .|+.|+|-|.-+++.
T Consensus 126 ~~l~~t~l~~~L~~~~~~-----G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 126 GLLADTPLMDRIRQRVHN-----GEISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHHTTCHHHHHHHHHHHT-----TSSEEEEETHHHHTTSS
T ss_pred HHHHhCCHHHHHHHHHHC-----CCeEEEEeCHHHHhhhH
Confidence 0111 1234555555543 5 899999999998875
No 53
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=95.89 E-value=0.013 Score=52.89 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=61.3
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh---------------------------
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE--------------------------- 107 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~--------------------------- 107 (232)
.....|+|+..++-. ...+ ...++.|+++|+++.++..+...
T Consensus 203 ~~~~ki~ill~dg~~---------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~ 271 (396)
T 3uk7_A 203 GANKRILFLCGDYME---------DYEV--KVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFAL 271 (396)
T ss_dssp CCCCEEEEECCTTEE---------HHHH--HHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEEC
T ss_pred hccceEEEEecCCCc---------chhH--HHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeec
Confidence 345678998875421 1112 34567788999998877543210
Q ss_pred -HHHHHh-hcCCCEEEECCCCCCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 108 -EILFEK-LELVNGILYTGGWAKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 108 -e~l~~~-l~~~dGlIl~GG~~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
..+.+. .+.+|.||+|||..... .......++++.+.++ ++||.+||-|-++|+.+
T Consensus 272 ~~~~~~~~~~~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~-----~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 272 TTNFDDLVSSSYDALVIPGGRAPEYLALNEHVLNIVKEFMNS-----EKPVASICHGQQILAAA 330 (396)
T ss_dssp CSCGGGCCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHT-----TCCEEEEGGGHHHHHHT
T ss_pred cCCHHHCCcccCCEEEECCCcchhhhccCHHHHHHHHHHHHC-----CCEEEEEchHHHHHHHc
Confidence 012221 24689999999974111 1113455666666655 59999999999999985
No 54
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=95.87 E-value=0.0025 Score=51.68 Aligned_cols=77 Identities=13% Similarity=0.077 Sum_probs=48.3
Q ss_pred HHHHHHh-CCCeEEEEeCCCC------------hHHHHHh-hcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCC
Q 039121 87 YVKFAES-GGARVIPLIFNEP------------EEILFEK-LELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDH 152 (232)
Q Consensus 87 ~v~~l~~-~G~~vv~i~~~~~------------~e~l~~~-l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (232)
..+.+++ .|+++..+..+.. ...+.+. .+.+|.||+|||............++++.+.++ +
T Consensus 20 ~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~l~~~l~~~~~~-----~ 94 (188)
T 2fex_A 20 LAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDR-----D 94 (188)
T ss_dssp HHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCCCCHHHHHHHHHT-----T
T ss_pred HHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccHHHHHHHHHHHHC-----C
Confidence 4456777 8888877764321 0111121 126899999999741111112344566666655 5
Q ss_pred ccEeehhHHHHHHHHH
Q 039121 153 FPVYAICLGFELLSMI 168 (232)
Q Consensus 153 ~PILGIClG~QlL~~~ 168 (232)
++|.+||-|.++|+.+
T Consensus 95 k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 95 RLVAGICAAASALGGT 110 (188)
T ss_dssp CEEEEETHHHHHHHHT
T ss_pred CEEEEECHHHHHHHHC
Confidence 9999999999999975
No 55
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=95.87 E-value=0.011 Score=50.64 Aligned_cols=79 Identities=9% Similarity=0.168 Sum_probs=51.2
Q ss_pred HHHHHHHhCCCeEEEEeCCCC----------------h-HH-------------HHHh-hcCCCEEEECCCCCC-----C
Q 039121 86 SYVKFAESGGARVIPLIFNEP----------------E-EI-------------LFEK-LELVNGILYTGGWAK-----S 129 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~----------------~-e~-------------l~~~-l~~~dGlIl~GG~~~-----~ 129 (232)
.-++.|+++|+++.++..+.. . -. +.+. .+.+|+||+|||... +
T Consensus 46 ~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv~~~~~D~livPGG~~~~~~L~~ 125 (242)
T 3l3b_A 46 LVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSN 125 (242)
T ss_dssp HHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGCCGGGCSEEEECCCHHHHHHHBS
T ss_pred HHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHCCcccCCEEEEcCCcchhhhhhh
Confidence 345778999999988765321 0 01 1111 235899999999641 0
Q ss_pred -----c---cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHH
Q 039121 130 -----G---LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIV 169 (232)
Q Consensus 130 -----~---~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~ 169 (232)
+ .......++++...++ ++||.+||-|..+|+.+-
T Consensus 126 ~~~~~~~~~~~~~~l~~~lr~~~~~-----gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 126 LFDEDKENDYILPEFKNAVREFYNA-----KKPIGAVCISPAVVVALL 168 (242)
T ss_dssp TTSCC--CCCBCHHHHHHHHHHHHT-----TCCEEEETTHHHHHHHHH
T ss_pred hhccccccccCCHHHHHHHHHHHHc-----CCEEEEECHHHHHHHHhC
Confidence 0 1123455666666655 599999999999999874
No 56
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=95.82 E-value=0.017 Score=56.96 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=61.7
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC------------hHHHHH-hhcCCCEEEE
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP------------EEILFE-KLELVNGILY 122 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~------------~e~l~~-~l~~~dGlIl 122 (232)
....|||+...+-. ...+ ...++.|+++|+.+.++..... ...+.+ ....+|+|||
T Consensus 599 ~grKVaILlaDGfE---------e~El--~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVV 667 (753)
T 3ttv_A 599 KGRVVAILLNDEVR---------SADL--LAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIV 667 (753)
T ss_dssp TTCEEEEECCTTCC---------HHHH--HHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEE
T ss_pred CCCEEEEEecCCCC---------HHHH--HHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEE
Confidence 34578999876421 1222 3667889999999988865331 001111 1124899999
Q ss_pred CCCCCCCccC-hhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 123 TGGWAKSGLY-YDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 123 ~GG~~~~~~~-~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
||| ..+... ...+.++++.+... ++||-+||-|-++|..+
T Consensus 668 PGG-g~~~Lr~d~~vl~~Vre~~~~-----gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 668 PCG-NIADIADNGDANYYLMEAYKH-----LKPIALAGDARKFKATI 708 (753)
T ss_dssp CCS-CGGGTTTCHHHHHHHHHHHHT-----TCCEEEEGGGGGGGGGG
T ss_pred CCC-ChHHhhhCHHHHHHHHHHHhc-----CCeEEEECchHHHHHHc
Confidence 999 422111 13456777777666 59999999999999865
No 57
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=95.71 E-value=0.015 Score=47.86 Aligned_cols=49 Identities=12% Similarity=0.195 Sum_probs=37.6
Q ss_pred hcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 114 LELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.+.+|.||+|||....... ....++++.+.++ +++|.+||-|-.+|+.+
T Consensus 69 ~~~~D~livpGG~~~~~~~-~~l~~~l~~~~~~-----g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKY-PELDRLLNDCAAH-----GMALGGLWNGAWFLGRA 117 (202)
T ss_dssp GTTCSEEEEECCTTCCSCC-TTHHHHHHHHHHH-----TCEEEEETTHHHHHHHH
T ss_pred CCCCCEEEEeCCCchhhcc-HHHHHHHHHHHhh-----CCEEEEECHHHHHHHHc
Confidence 3578999999997632222 4566777777666 49999999999999986
No 58
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=95.46 E-value=0.061 Score=52.59 Aligned_cols=99 Identities=18% Similarity=0.100 Sum_probs=62.7
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh---HHHHH-hhcCCCEEEECCCCC----
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE---EILFE-KLELVNGILYTGGWA---- 127 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~---e~l~~-~l~~~dGlIl~GG~~---- 127 (232)
....|||+....++. +... ....++.|+++|+.++++-..... ..+.+ ....+|+||||||..
T Consensus 528 ~g~kVaIL~a~~dGf-------e~~E--~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~ 598 (688)
T 2iuf_A 528 DGLKVGLLASVNKPA-------SIAQ--GAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFG 598 (688)
T ss_dssp TTCEEEEECCTTCHH-------HHHH--HHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCC
T ss_pred CCCEEEEEecCCCCC-------cHHH--HHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccc
Confidence 345799987732211 1112 236678899999999998754311 11111 123689999999952
Q ss_pred -------------CCccC-hhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 128 -------------KSGLY-YDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 128 -------------~~~~~-~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.+..+ .....++++.+... +|||-+||-|-++|..+
T Consensus 599 ~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~-----gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 599 ADSFTVEPSAGSGASTLYPAGRPLNILLDAFRF-----GKTVGALGSGSDALESG 648 (688)
T ss_dssp TTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHH-----TCEEEEEGGGHHHHHHT
T ss_pred ccccccccccccchhhcccChHHHHHHHHHHHc-----CCEEEEECchHHHHHHc
Confidence 11111 13466777777776 49999999999988754
No 59
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=95.29 E-value=0.028 Score=46.50 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=35.8
Q ss_pred hcCCCEEEECCCCCCCc---cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 114 LELVNGILYTGGWAKSG---LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~~---~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
++.+|.||+|||..... .......++++...++ +++|.+||-|-.+|+.+
T Consensus 72 ~~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~-----g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 72 FDFTNILIIGSIGDPLESLDKIDPALFDWIRELHLK-----GSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CSCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHT-----TCEEEEETTHHHHHHHH
T ss_pred cCCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhc-----CCEEEEEcHHHHHHHHc
Confidence 35789999999975211 1123455666666554 59999999999999986
No 60
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=95.12 E-value=0.024 Score=46.77 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=59.7
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC-Ch------------HHHHHh-hcCCCEEE
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE-PE------------EILFEK-LELVNGIL 121 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~------------e~l~~~-l~~~dGlI 121 (232)
+.+.|+|+..++-. ...+ ...++.++.+|+++.++..+. .+ ..+.+. .+.+|.||
T Consensus 8 m~~~v~ill~~g~~---------~~e~--~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~li 76 (208)
T 3ot1_A 8 MSKRILVPVAHGSE---------EMET--VIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALA 76 (208)
T ss_dssp -CCEEEEEECTTCC---------HHHH--HHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEE
T ss_pred cCCeEEEEECCCCc---------HHHH--HHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEE
Confidence 34578888776421 1222 245678889999888876542 10 012221 24689999
Q ss_pred ECCCCC-CCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHH-HHHHHH
Q 039121 122 YTGGWA-KSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGF-ELLSMI 168 (232)
Q Consensus 122 l~GG~~-~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~-QlL~~~ 168 (232)
+|||.. ... .......++++.+.++ +++|.+||-|- .+|+.+
T Consensus 77 vpGG~~~~~~l~~~~~l~~~l~~~~~~-----gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 77 LPGGVGGAQAFADSTALLALIDAFSQQ-----GKLVAAICATPALVFAKQ 121 (208)
T ss_dssp ECCCHHHHHHHHTCHHHHHHHHHHHHT-----TCEEEEETTHHHHTTTTT
T ss_pred ECCCchHHHHHhhCHHHHHHHHHHHHc-----CCEEEEEChhHHHHHHHC
Confidence 999963 110 1113455666666655 59999999998 888864
No 61
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=94.89 E-value=0.045 Score=49.63 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=59.2
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh---------H-----HHHHh-hcCCCEEE
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE---------E-----ILFEK-LELVNGIL 121 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~---------e-----~l~~~-l~~~dGlI 121 (232)
...|+|+..++-. ...+ ...++.|+.+|+++.++..+... . .+.+. ...+|.||
T Consensus 10 mkkV~ILl~dgf~---------~~El--~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLi 78 (365)
T 3fse_A 10 KKKVAILIEQAVE---------DTEF--IIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVV 78 (365)
T ss_dssp -CEEEEECCTTBC---------HHHH--HHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEE
T ss_pred ceEEEEEECCCCc---------HHHH--HHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEE
Confidence 4578998876421 1122 24567888999988877643221 0 01111 12589999
Q ss_pred ECCCCCCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 122 YTGGWAKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 122 l~GG~~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+|||..... .......++++.+..+ +++|.+||-|-.+|+.+
T Consensus 79 VPGG~g~~~l~~~~~l~~~Lr~~~~~-----gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 79 IPGGMAPDKMRRNPNTVRFVQEAMEQ-----GKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp ECCBTHHHHHTTCHHHHHHHHHHHHT-----TCEEEEETTTHHHHHHT
T ss_pred EECCcchhhccCCHHHHHHHHHHHHC-----CCEEEEECHHHHHHHHc
Confidence 999974211 1113455666666655 59999999999999875
No 62
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=94.88 E-value=0.087 Score=51.80 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=61.0
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC------------hHHHHHh-hcCCCEEEEC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP------------EEILFEK-LELVNGILYT 123 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~------------~e~l~~~-l~~~dGlIl~ 123 (232)
...|+|+..++-. .... ...++.|+.+|+++.++..... ...+.+. ...+|+||+|
T Consensus 534 ~rkVaILl~dGfe---------~~El--~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVP 602 (715)
T 1sy7_A 534 SRRVAIIIADGYD---------NVAY--DAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIP 602 (715)
T ss_dssp TCEEEEECCTTBC---------HHHH--HHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEEC
T ss_pred CCEEEEEEcCCCC---------HHHH--HHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEc
Confidence 3569999875421 1111 3456788999999988765321 0111111 2357999999
Q ss_pred CCC-CCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHc
Q 039121 124 GGW-AKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVS 170 (232)
Q Consensus 124 GG~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~G 170 (232)
||. .... .......++++.+.+. ++||.+||-|-.+|+.++|
T Consensus 603 GG~~~~~~l~~~~~l~~~Lr~~~~~-----gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 603 GGAKAAETLSKNGRALHWIREAFGH-----LKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHHHT-----TCEEEEETTHHHHHHHHHC
T ss_pred CCcccHhhhccCHHHHHHHHHHHhC-----CCEEEEECHHHHHHHHccC
Confidence 994 2110 0112355666666655 5999999999999998743
No 63
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=94.79 E-value=0.052 Score=46.26 Aligned_cols=49 Identities=18% Similarity=0.095 Sum_probs=35.3
Q ss_pred cCCCEEEECCCCCC-C-ccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 115 ELVNGILYTGGWAK-S-GLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 115 ~~~dGlIl~GG~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
+.+|+|++|||... . -.......++++.+.++ ++||-+||-|-.+|+.+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~-----gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYAN-----GGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHT-----TCEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHc-----CCEEEEECHHHHHHHHh
Confidence 35899999999752 1 11123455667777665 59999999999999875
No 64
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=94.38 E-value=0.07 Score=45.70 Aligned_cols=96 Identities=11% Similarity=0.019 Sum_probs=56.5
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHH-HhCCCeEEEEeCCCC------------hHHHHHhhcCCCEEEEC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFA-ESGGARVIPLIFNEP------------EEILFEKLELVNGILYT 123 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l-~~~G~~vv~i~~~~~------------~e~l~~~l~~~dGlIl~ 123 (232)
...|+|+..++-. ..++ ...++.+ +..|+++.++..+.. ...+.+.-..+|.||+|
T Consensus 23 ~~~I~ill~~gf~---------~~e~--~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liVP 91 (253)
T 3ewn_A 23 DEQIAMLVYPGMT---------VMDL--VGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFAP 91 (253)
T ss_dssp CCEEEEECCTTBC---------HHHH--HHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEEC
T ss_pred CeEEEEEeCCCCc---------HHHH--HHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEEC
Confidence 3579999886521 1222 2345566 456888877754321 01122211235999999
Q ss_pred CCC-CCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 124 GGW-AKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 124 GG~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
||. +... .......++++...++ +++|.+||-|-.+|+.+
T Consensus 92 GG~~g~~~l~~~~~l~~~Lr~~~~~-----gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 92 GGTDGTLAAASDAETLAFMADRGAR-----AKYITSVCSGSLILGAA 133 (253)
T ss_dssp CBSHHHHHHTTCHHHHHHHHHHHTT-----CSEEEEETTHHHHHHHT
T ss_pred CCccchhhhccCHHHHHHHHHHHHc-----CCEEEEEChHHHHHHHc
Confidence 997 4111 1112344555555444 69999999999999875
No 65
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=94.04 E-value=0.018 Score=47.63 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=51.0
Q ss_pred HHHHHHHhCCCeEEEEeCCCC-----h--------------HHH------HHh-hcCCCEEEECCCCCCC--ccChhHHH
Q 039121 86 SYVKFAESGGARVIPLIFNEP-----E--------------EIL------FEK-LELVNGILYTGGWAKS--GLYYDIVE 137 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~-----~--------------e~l------~~~-l~~~dGlIl~GG~~~~--~~~~~~~~ 137 (232)
...+.++++|+++.++..+.. . ..+ .+. .+.+|+||+|||.... -.......
T Consensus 33 ~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~ 112 (224)
T 1u9c_A 33 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQ 112 (224)
T ss_dssp HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHH
Confidence 345678889999988765321 0 001 111 1368999999997521 11123456
Q ss_pred HHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 138 KIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 138 ~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
++++.+.++ ++||.+||-|-++|+.+
T Consensus 113 ~~l~~~~~~-----~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 113 YVLQQFAED-----GRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHHT-----TCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHC-----CCEEEEEChHHHHHHHc
Confidence 677776665 59999999999999864
No 66
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=92.92 E-value=0.066 Score=45.04 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=55.0
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHh-CCCeEEEEeCCCC------------hHHHHHhhcCCCEEEECC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAES-GGARVIPLIFNEP------------EEILFEKLELVNGILYTG 124 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~-~G~~vv~i~~~~~------------~e~l~~~l~~~dGlIl~G 124 (232)
..|+|+..++-. ..+. ...++.++. .|+++.++..+.. ...+.+ +..+|.|++||
T Consensus 6 ~~V~ill~~gf~---------~~e~--~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~-~~~~D~livpG 73 (231)
T 3noq_A 6 VQIGFLLFPEVQ---------QLDL--TGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFAD-CPPLDVICIPG 73 (231)
T ss_dssp EEEEEECCTTCC---------HHHH--HHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTT-CCCCSEEEECC
T ss_pred EEEEEEEeCCCc---------HHHH--HHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhH-CCcCCEEEECC
Confidence 468888876521 1112 234556666 5766666543210 001112 35689999999
Q ss_pred CCCCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 125 GWAKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 125 G~~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
|..... .......++++....+ +++|.+||-|-.+|+.+
T Consensus 74 G~g~~~~~~~~~l~~~lr~~~~~-----g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 74 GTGVGALMEDPQALAFIRQQAAR-----ARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp STTHHHHTTCHHHHHHHHHHHTT-----CSEEEEETTHHHHHHHT
T ss_pred CCChhhhccCHHHHHHHHHHHhc-----CCEEEEECHHHHHHHHc
Confidence 975211 1112344555555444 69999999999999875
No 67
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=92.90 E-value=0.046 Score=45.29 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=34.8
Q ss_pred cCCCEEEECCCCCCCc-cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 115 ELVNGILYTGGWAKSG-LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 115 ~~~dGlIl~GG~~~~~-~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
..+|.||+|||..... .......++++.+.++ +++|.+||-|-.+|+.+
T Consensus 64 ~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~-----~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 64 NIEKILFVPGGSGTREKVNDDNFINFIGNMVKE-----SKYIISVCTGSALLSKA 113 (211)
T ss_dssp SSEEEEEECCSTHHHHHTTCHHHHHHHHHHHHH-----CSEEEECTTHHHHHHHT
T ss_pred CCCCEEEECCCcchhhhcCCHHHHHHHHHHHHc-----CCEEEEEchHHHHHHhc
Confidence 3479999999975211 1113455667776665 49999999999999875
No 68
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=92.59 E-value=0.028 Score=47.48 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=34.7
Q ss_pred CCCEEEECCCCCC--CccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 116 LVNGILYTGGWAK--SGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 116 ~~dGlIl~GG~~~--~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.+|+||+|||... +-.......++++.+.++ ++||.+||-|-.+|+.+
T Consensus 98 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~-----gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 98 DYQIFFASAGHGTLFDYPKAKDLQDIASEIYAN-----GGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHT-----TCEEEEETTGGGGGTTC
T ss_pred hCcEEEECCCCCchhhcccCHHHHHHHHHHHHc-----CCEEEEECCCHHHHHhc
Confidence 5799999999761 111123455667776665 59999999999988875
No 69
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=91.91 E-value=0.054 Score=46.32 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=34.7
Q ss_pred CCCEEEECCCCCC-C-ccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 116 LVNGILYTGGWAK-S-GLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 116 ~~dGlIl~GG~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.+|+|++|||... . -.......++++.+.++ ++||-+||-|-.+|+.+
T Consensus 105 ~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~-----gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 105 DYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKR-----GGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHT-----TCEEEEETTGGGGGGGC
T ss_pred hCCEEEEeCCCchhhhcccCHHHHHHHHHHHHc-----CCEEEEEChHHHHHHHh
Confidence 5799999999852 1 11123355667776665 59999999999999865
No 70
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=90.82 E-value=0.066 Score=46.74 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=35.5
Q ss_pred hcCCCEEEECCCCCCC--ccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 114 LELVNGILYTGGWAKS--GLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 114 l~~~dGlIl~GG~~~~--~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.+.+|+||+|||.... -.......++++.+.++ +++|.+||-|-.+|..+
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~-----gk~VaaIC~Gp~~La~a 194 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKN-----DRFVISLCHGPAAFLAL 194 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHT-----TCEEEEETTGGGGGGGG
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHc-----CCEEEEECccHHHHHhh
Confidence 3578999999996521 11123456677777665 59999999999987764
No 71
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=89.31 E-value=0.32 Score=39.54 Aligned_cols=74 Identities=11% Similarity=0.012 Sum_probs=40.3
Q ss_pred HHHHHHhCCCeEEEEeCCCC------------------hHH---HHHhhcCCCEEEECCCCCCCccCh---hHHHHHHHH
Q 039121 87 YVKFAESGGARVIPLIFNEP------------------EEI---LFEKLELVNGILYTGGWAKSGLYY---DIVEKIFKK 142 (232)
Q Consensus 87 ~v~~l~~~G~~vv~i~~~~~------------------~e~---l~~~l~~~dGlIl~GG~~~~~~~~---~~~~~~~~~ 142 (232)
-++.|+++|..+..+..... .++ .+...+.+|.||+|||... .... ....++++.
T Consensus 23 p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~~-~~~l~~~~~l~~~l~~ 101 (194)
T 4gdh_A 23 PWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLG-AKTLSTTPFVQQVVKE 101 (194)
T ss_dssp HHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHHH-HHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCchh-HhHhhhCHHHHHHHHH
Confidence 45678889987765543211 011 1112345899999999531 1111 122333333
Q ss_pred HHHhcCCCCCccEeehhHHHHHH
Q 039121 143 ILEKNDAGDHFPVYAICLGFELL 165 (232)
Q Consensus 143 ~l~~~~~~~~~PILGIClG~QlL 165 (232)
.. .+.++++-.||-|.-++
T Consensus 102 ~~----~~~~k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 102 FY----KKPNKWIGMICAGTLTA 120 (194)
T ss_dssp HT----TCTTCEEEEEGGGGHHH
T ss_pred hh----hcCCceEEeecccccch
Confidence 32 23369999999998443
No 72
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=88.07 E-value=0.21 Score=42.29 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=31.2
Q ss_pred hcCCCEEEECCC-CCCCccChhHHHHHHHHHHHhcCCCCCc-cEeehhHHHHHHHHH
Q 039121 114 LELVNGILYTGG-WAKSGLYYDIVEKIFKKILEKNDAGDHF-PVYAICLGFELLSMI 168 (232)
Q Consensus 114 l~~~dGlIl~GG-~~~~~~~~~~~~~~~~~~l~~~~~~~~~-PILGIClG~QlL~~~ 168 (232)
...+|.||+||| .+.. ......+++++. . ..+++ +|.+||-|-.+|+.+
T Consensus 78 ~~~~D~liVPGG~~g~~--~l~~~~~l~~~L--~--~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 78 VKEQDVVLITSGYRGIP--AALQDENFMSAL--K--LDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp GGGCSEEEECCCTTHHH--HHHTCHHHHHHC--C--CCTTTCEEEEETTHHHHHHHT
T ss_pred ccCCCEEEEcCCccCHh--hhccCHHHHHHH--H--hCCCCCEEEEEcHHHHHHHHc
Confidence 457899999999 4311 011112333333 2 23445 999999999999985
No 73
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=86.74 E-value=1.9 Score=34.75 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCCCEEEEeCCCCCCC----C-CCcCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHH----HhhcC--CCEEEE
Q 039121 55 NYRPVIGILSHPGDGA----S-GRLSNATNASYISASYVKFAESGGARVIPLIF-NEPEEILF----EKLEL--VNGILY 122 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~----~-~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~----~~l~~--~dGlIl 122 (232)
..+|.+||++.=.+.. . |...+ .+. ..+...+++.|++++.... ..+.+.+. +.+++ +|-||.
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~D-sn~----~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVit 87 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVD-ESG----DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCC-HHH----HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEee-hHH----HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 4578999987532100 0 11111 122 2344578999998865432 33444443 34445 899999
Q ss_pred CCCCCCC
Q 039121 123 TGGWAKS 129 (232)
Q Consensus 123 ~GG~~~~ 129 (232)
+||....
T Consensus 88 tGG~s~g 94 (178)
T 2pjk_A 88 TGGTGYS 94 (178)
T ss_dssp ESCCSSS
T ss_pred CCCCCCC
Confidence 9998743
No 74
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=86.30 E-value=0.48 Score=37.81 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=37.3
Q ss_pred CCCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHH----Hhhc-CCCEEEECCCC
Q 039121 53 SLNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF-NEPEEILF----EKLE-LVNGILYTGGW 126 (232)
Q Consensus 53 ~~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~----~~l~-~~dGlIl~GG~ 126 (232)
..+.+|.++|++.=.+-..|...+ .+.. .+..++++.|++++.... ..+ +.+. +.++ .+|-||.+||-
T Consensus 3 ~~~~~~rv~ii~tGdEl~~G~i~D-sn~~----~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~ 76 (164)
T 3pzy_A 3 GSMTTRSARVIIASTRASSGEYED-RCGP----IITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGT 76 (164)
T ss_dssp ----CCEEEEEEECHHHHC----C-CHHH----HHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CCCCCCEEEEEEECCCCCCCceee-HHHH----HHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCC
Confidence 346789999987532211122211 1222 344578999998753221 223 4443 3343 79999999998
Q ss_pred CCC
Q 039121 127 AKS 129 (232)
Q Consensus 127 ~~~ 129 (232)
...
T Consensus 77 s~g 79 (164)
T 3pzy_A 77 GIA 79 (164)
T ss_dssp SSS
T ss_pred CCC
Confidence 743
No 75
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=84.53 E-value=3.7 Score=33.09 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCeEEEEeC-CCChHHHH----HhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhH
Q 039121 86 SYVKFAESGGARVIPLIF-NEPEEILF----EKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICL 160 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~-~~~~e~l~----~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGICl 160 (232)
.+.+++++.|+.+..... ..+.+.+. +.++++|-||.+||-...+. +..++.+..++. +++.+-=-
T Consensus 27 ~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~--D~T~ea~a~~~~-------~~l~~~~e 97 (172)
T 3kbq_A 27 FIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFD--DMTVEGFAKCIG-------QDLRIDED 97 (172)
T ss_dssp HHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTT--CCHHHHHHHHHT-------CCCEECHH
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcc--cchHHHHHHHcC-------CCeeeCHH
Confidence 344578999998865442 23444443 44456899999998874332 223344444443 45555445
Q ss_pred HHHHHHHHHcC
Q 039121 161 GFELLSMIVSE 171 (232)
Q Consensus 161 G~QlL~~~~GG 171 (232)
-++.|-..+++
T Consensus 98 ~~~~i~~~~~~ 108 (172)
T 3kbq_A 98 ALAMIKKKYGQ 108 (172)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 56666666654
No 76
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=84.33 E-value=3.8 Score=35.07 Aligned_cols=62 Identities=11% Similarity=-0.064 Sum_probs=40.5
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChH----HHHHhhc---CCCEEEECC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEE----ILFEKLE---LVNGILYTG 124 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e----~l~~~l~---~~dGlIl~G 124 (232)
.++.||++...... ......+...+.+..++.|..+++.....+.+ .++..+. ++||||+.+
T Consensus 2 ~~~~Ig~i~p~~~~-------~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 2 SLTSVVFLNPGNST-------ETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp -CCEEEEEECSCTT-------CHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCCEEEEECCCCCC-------ChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 46789998764321 01334455677778888899998876655433 2444454 799999985
No 77
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=82.94 E-value=1.6 Score=35.81 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=35.4
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCe--EEEEe-CCCChHHH----HHhhc--CCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGAR--VIPLI-FNEPEEIL----FEKLE--LVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~--vv~i~-~~~~~e~l----~~~l~--~~dGlIl~GG~ 126 (232)
.+|.++|.+.-.+...|...+ .+. ..+.++|++.|+. ++... ...+.+.+ .+.++ ++|-||.+||-
T Consensus 2 ~~~rv~IIttGdEl~~G~i~D-~n~----~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 2 ATLRIGLVSISDRASSGVYQD-KGI----PALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp CCEEEEEEEEECC-------C-CHH----HHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCEEEEEEECCCCCCCeEEc-hHH----HHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 467888887533322222221 122 2344578888876 32211 12333443 33444 58999999998
Q ss_pred CCC
Q 039121 127 AKS 129 (232)
Q Consensus 127 ~~~ 129 (232)
...
T Consensus 77 g~g 79 (195)
T 1di6_A 77 GPA 79 (195)
T ss_dssp SSS
T ss_pred CCC
Confidence 743
No 78
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=81.69 E-value=1.8 Score=35.22 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=38.3
Q ss_pred CCCCCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHh---CCCeEEEEeC-CCChHHH----HHhhc--CCCEE
Q 039121 51 DPSLNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAES---GGARVIPLIF-NEPEEIL----FEKLE--LVNGI 120 (232)
Q Consensus 51 ~~~~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~---~G~~vv~i~~-~~~~e~l----~~~l~--~~dGl 120 (232)
.-....+|.++|++.-.+-..|...+ .+..+ +.+.|++ .|+.++.... ..+.+.+ .+.++ ++|-|
T Consensus 8 ~v~v~~~~rv~IistGdEl~~g~~~D-~n~~~----L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlV 82 (189)
T 1jlj_A 8 LTNHDHQIRVGVLTVSDSCFRNLAED-RSGIN----LKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLI 82 (189)
T ss_dssp -----CCCEEEEEEECHHHHTTSSCC-HHHHH----HHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEE
T ss_pred cccccCCCEEEEEEECCccCCCcccc-hHHHH----HHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEE
Confidence 33445678999987532111111111 12223 3446777 7987764332 2344443 33344 68999
Q ss_pred EECCCCCCC
Q 039121 121 LYTGGWAKS 129 (232)
Q Consensus 121 Il~GG~~~~ 129 (232)
|.+||-...
T Consensus 83 IttGGtg~g 91 (189)
T 1jlj_A 83 LTTGGTGFA 91 (189)
T ss_dssp EEESCCSSS
T ss_pred EEcCCCCCC
Confidence 999998743
No 79
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=81.63 E-value=8.2 Score=31.64 Aligned_cols=63 Identities=13% Similarity=0.050 Sum_probs=39.8
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
...+||++...... .....+...+.+.+++.|..+++.....+.+. ++.++ .++||||+.+..
T Consensus 7 ~~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 74 (293)
T 3l6u_A 7 KRNIVGFTIVNDKH--------EFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLD 74 (293)
T ss_dssp --CEEEEEESCSCS--------HHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCcEEEEEEecCCc--------HHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 45789998764321 12344556777888889999988876554432 22222 369999998754
No 80
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=81.58 E-value=11 Score=31.40 Aligned_cols=63 Identities=10% Similarity=-0.054 Sum_probs=40.7
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
.+..|||+...... .....+...+.+.+++.|..+.+.....+.+. ++..+ .++||||+.+..
T Consensus 2 ~~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~ 69 (330)
T 3uug_A 2 DKGSVGIAMPTKSS--------ARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASID 69 (330)
T ss_dssp CCCEEEEEECCSSS--------THHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred CCcEEEEEeCCCcc--------hHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35789998764321 13344566778888999999888765544332 22222 379999998643
No 81
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=80.55 E-value=11 Score=30.76 Aligned_cols=62 Identities=16% Similarity=0.075 Sum_probs=39.3
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
..+||++...... ....-+...+.+.+++.|..+++.....+.+. ++.++ .++||||+.+..
T Consensus 5 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 71 (291)
T 3l49_A 5 GKTIGITAIGTDH--------DWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGN 71 (291)
T ss_dssp TCEEEEEESCCSS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSC
T ss_pred CcEEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4679998763221 12334556777888899999988876554332 22222 379999998653
No 82
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=80.37 E-value=8.1 Score=30.65 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=39.0
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHH----HhhcC--CCEEEECCCCC
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF-NEPEEILF----EKLEL--VNGILYTGGWA 127 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~----~~l~~--~dGlIl~GG~~ 127 (232)
..+|.++|.+.-.+ .|...+ .+.. .+.+.|++.|+++..... ..+.+.+. +.+++ +|-||.+||-.
T Consensus 8 ~~~~~v~Ii~tGdE--~g~i~D-~n~~----~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 8 FIPTRIAILTVSNR--RGEEDD-TSGH----YLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp CCCCEEEEEEECSS--CCGGGC-HHHH----HHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred CCCCEEEEEEEeCC--CCcccC-ccHH----HHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 45688998875322 222221 2222 344578899998764332 23444433 33443 99999999887
Q ss_pred C
Q 039121 128 K 128 (232)
Q Consensus 128 ~ 128 (232)
.
T Consensus 81 ~ 81 (172)
T 1mkz_A 81 L 81 (172)
T ss_dssp S
T ss_pred C
Confidence 4
No 83
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=80.31 E-value=9.2 Score=31.87 Aligned_cols=62 Identities=23% Similarity=0.052 Sum_probs=39.4
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
+.+||++...... ....-+...+.+.+++.|..+.+.....+.+. ++.++ .++||||+.+..
T Consensus 2 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (313)
T 3m9w_A 2 EVKIGMAIDDLRL--------ERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYN 68 (313)
T ss_dssp -CEEEEEESCCSS--------STTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CcEEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4679988764321 12334556777888999999988776544432 22222 369999998754
No 84
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=79.63 E-value=11 Score=30.88 Aligned_cols=62 Identities=8% Similarity=-0.030 Sum_probs=37.6
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
+..||++...... .....+...+.+.+++.|..+++.....+.+. ++.++ .++||||+.+..
T Consensus 2 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 68 (290)
T 2fn9_A 2 KGKMAIVISTLNN--------PWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTD 68 (290)
T ss_dssp -CEEEEEESCSSS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred ceEEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 4578988753211 12334556677788889998887765444322 22322 369999998643
No 85
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=78.73 E-value=17 Score=29.55 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=40.1
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
+..||++...... ....-+...+.+.+++.|..+.+.....+.+. ++.+. .++||||+.+..
T Consensus 15 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 15 NKTIGVLTTYISD--------YIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CCEEEEEESCSSS--------TTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred CceEEEEeCCCCc--------hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 3789998764321 12344556777888899999988876544432 22222 379999998754
No 86
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=78.17 E-value=5.6 Score=36.28 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=44.7
Q ss_pred cCCCCCCCCCCCCEEEEeCCCCCCC-CCC-cCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHH----HhhcCCC
Q 039121 46 HCPAPDPSLNYRPVIGILSHPGDGA-SGR-LSNATNASYISASYVKFAESGGARVIPLIF-NEPEEILF----EKLELVN 118 (232)
Q Consensus 46 ~~~~~~~~~~~~PvIGI~~~~~~~~-~~~-~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~----~~l~~~d 118 (232)
+++...-....+|.|+|.+.-..-. .|. +..++-.+--...+...+++.|++++.... ..+.+.+. +.++.+|
T Consensus 166 s~G~~~V~V~~~~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~D 245 (411)
T 1g8l_A 166 SLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQAD 245 (411)
T ss_dssp HTTCCEEEEECCCEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCS
T ss_pred hCCCceEEecCCCEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCC
Confidence 3433333445689999987422110 000 001111122222344578999998865432 23444443 3345789
Q ss_pred EEEECCCCCCC
Q 039121 119 GILYTGGWAKS 129 (232)
Q Consensus 119 GlIl~GG~~~~ 129 (232)
-||.+||....
T Consensus 246 lvittGG~s~g 256 (411)
T 1g8l_A 246 VVISSGGVSVG 256 (411)
T ss_dssp EEEECSSSCSS
T ss_pred EEEECCCCCCC
Confidence 99999998753
No 87
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=77.83 E-value=2.7 Score=34.25 Aligned_cols=70 Identities=11% Similarity=-0.006 Sum_probs=40.1
Q ss_pred CCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHH----Hhh-cCCCEEEECCCCC
Q 039121 54 LNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF-NEPEEILF----EKL-ELVNGILYTGGWA 127 (232)
Q Consensus 54 ~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~----~~l-~~~dGlIl~GG~~ 127 (232)
...+|.++|++.=.+...|. .+--...+...+++.|++++.... ..+.+.+. +.+ +++|-||.+||-.
T Consensus 27 ~~~~~rvaIistGdEl~~G~------~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts 100 (185)
T 3rfq_A 27 ELVVGRALVVVVDDRTAHGD------EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTG 100 (185)
T ss_dssp --CCEEEEEEEECHHHHTTC------CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CCCCCEEEEEEECcccCCCC------cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 34689999997532211121 111223345578999998764432 23444443 333 4789999999987
Q ss_pred CC
Q 039121 128 KS 129 (232)
Q Consensus 128 ~~ 129 (232)
..
T Consensus 101 ~g 102 (185)
T 3rfq_A 101 VT 102 (185)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 88
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=77.53 E-value=6.6 Score=31.02 Aligned_cols=68 Identities=12% Similarity=0.165 Sum_probs=39.1
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHH----HHhhc--CCCEEEECCCCC
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF-NEPEEIL----FEKLE--LVNGILYTGGWA 127 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l----~~~l~--~~dGlIl~GG~~ 127 (232)
..+|.++|++.-.+. |...+ .+..+ +.+.|++.|+.+..... ..+.+.+ .+.++ ++|-||.+||-.
T Consensus 11 ~~~~rv~Ii~tGdEl--g~i~D-sn~~~----l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 11 PKEVRCKIVTISDTR--TEETD-KSGQL----LHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp -CCCEEEEEEECSSC--CTTTC-HHHHH----HHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred ccCCEEEEEEEcCcc--Ceecc-ChHHH----HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 457889988743221 22211 22223 34568888998764432 2333433 34455 789999999887
Q ss_pred CC
Q 039121 128 KS 129 (232)
Q Consensus 128 ~~ 129 (232)
..
T Consensus 84 ~g 85 (169)
T 1y5e_A 84 IT 85 (169)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 89
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=76.94 E-value=12 Score=30.93 Aligned_cols=63 Identities=16% Similarity=-0.021 Sum_probs=39.1
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCC--CChHH----HHHhh-cCCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFN--EPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~--~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
.+..||++...... .....+...+.+.+++.|..+++.... .+.+. ++.++ .++||||+.+..
T Consensus 2 ~~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 71 (297)
T 3rot_A 2 VRDKYYLITHGSQD--------PYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPS 71 (297)
T ss_dssp -CCEEEEECSCCCS--------HHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCC
T ss_pred ceEEEEEEecCCCC--------chHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 35679998764321 234445667778888899998877643 23322 22222 379999998643
No 90
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=74.67 E-value=13 Score=29.95 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=36.7
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCC--CChH----HHHHhh-cC-CCEEEECCC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFN--EPEE----ILFEKL-EL-VNGILYTGG 125 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~--~~~e----~l~~~l-~~-~dGlIl~GG 125 (232)
|.||++...... .....+...+.+.+++.|..+.+...+ .+.+ .++.++ .+ +||||+.+.
T Consensus 1 ~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 1 PKLLLVLKGDSN--------AYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp CEEEEECSCSSS--------THHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred CeEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 578888763321 133445567777888889988876532 2322 222222 36 999999874
No 91
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=73.83 E-value=3.6 Score=32.97 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=36.3
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHH---hCCCeEEEEeCCCChHHH----HHhhc--CCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAE---SGGARVIPLIFNEPEEIL----FEKLE--LVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~---~~G~~vv~i~~~~~~e~l----~~~l~--~~dGlIl~GG~ 126 (232)
.+|.++|++.-.....|...+ .+..++ .+.++ +.|+++.......+.+.+ .+.++ ++|-||.+||-
T Consensus 4 ~~~rv~IistGdE~~~G~i~D-sn~~~l----~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~ 78 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYED-ISGKAI----IDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGT 78 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSCC-HHHHHH----HHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCEEEEEEeCCcCCCCCeec-chHHHH----HHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 468888887522111122211 222333 33465 789987332233344443 34444 68999999987
Q ss_pred CC
Q 039121 127 AK 128 (232)
Q Consensus 127 ~~ 128 (232)
..
T Consensus 79 g~ 80 (178)
T 2pbq_A 79 GP 80 (178)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 92
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=73.54 E-value=31 Score=27.63 Aligned_cols=61 Identities=7% Similarity=0.030 Sum_probs=39.0
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
.+||++...... .....+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+..
T Consensus 3 ~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 3 RTLGFILPDLEN--------PSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CEEEEEESCTTC--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred eEEEEEeCCCcC--------hhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 578888754321 12334556677888889999988876554332 22222 379999998754
No 93
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=73.24 E-value=23 Score=28.79 Aligned_cols=63 Identities=14% Similarity=-0.004 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
....||++...... .....+...+.+.+++.|..+.+.....+.+. ++.+. .++||||+.+..
T Consensus 6 ~s~~Igvi~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 73 (276)
T 3jy6_A 6 SSKLIAVIVANIDD--------YFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFS 73 (276)
T ss_dssp CCCEEEEEESCTTS--------HHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSC
T ss_pred CCcEEEEEeCCCCc--------hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 35689998753221 12334556677788889999988876554432 22222 379999998754
No 94
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=72.99 E-value=2 Score=36.69 Aligned_cols=81 Identities=20% Similarity=0.135 Sum_probs=45.9
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----------HHHhhcCCCEEEECCCCC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----------LFEKLELVNGILYTGGWA 127 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----------l~~~l~~~dGlIl~GG~~ 127 (232)
..|+|..+|.... ..-....+.+++++.|.++...... .+. .+...+.+|.||.-||.+
T Consensus 6 kki~ii~np~~~~---------~~~~~~~i~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDG 74 (292)
T 2an1_A 6 KCIGIVGHPRHPT---------ALTTHEMLYRWLCDQGYEVIVEQQI--AHELQLKNVPTGTLAEIGQQADLAVVVGGDG 74 (292)
T ss_dssp CEEEEECC----------------CHHHHHHHHHHHTTCEEEEEHHH--HHHTTCSSCCEECHHHHHHHCSEEEECSCHH
T ss_pred cEEEEEEcCCCHH---------HHHHHHHHHHHHHHCCCEEEEecch--hhhcccccccccchhhcccCCCEEEEEcCcH
Confidence 4689998876421 1233567889999999987664311 000 112234689999999976
Q ss_pred CCccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 128 KSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
+.....+.... .+.|+|||=.|
T Consensus 75 -------T~l~a~~~~~~-----~~~P~lGI~~G 96 (292)
T 2an1_A 75 -------NMLGAARTLAR-----YDINVIGINRG 96 (292)
T ss_dssp -------HHHHHHHHHTT-----SSCEEEEBCSS
T ss_pred -------HHHHHHHHhhc-----CCCCEEEEECC
Confidence 22233333322 25899999644
No 95
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=72.67 E-value=8.3 Score=35.03 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=39.7
Q ss_pred CCCCCCEEEEeCCCCCCC-CCC-cCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHH----HhhcCCCEEEECCC
Q 039121 53 SLNYRPVIGILSHPGDGA-SGR-LSNATNASYISASYVKFAESGGARVIPLIF-NEPEEILF----EKLELVNGILYTGG 125 (232)
Q Consensus 53 ~~~~~PvIGI~~~~~~~~-~~~-~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~----~~l~~~dGlIl~GG 125 (232)
....+|.|+|.+.-..-. .|. +..++-.+--...+...+++.|++++.... ..+.+.+. +.++++|-||.+||
T Consensus 176 ~V~~~prv~IistGdEl~~~g~~~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG 255 (402)
T 1uz5_A 176 KVFRKPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGG 255 (402)
T ss_dssp EEECCCEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECC
T ss_pred eecCCCEEEEEEcCccccCCCCCCCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCC
Confidence 335689999987422110 000 011111112222344578888998865432 23444443 34456899999999
Q ss_pred CCCC
Q 039121 126 WAKS 129 (232)
Q Consensus 126 ~~~~ 129 (232)
....
T Consensus 256 ~s~g 259 (402)
T 1uz5_A 256 ASGG 259 (402)
T ss_dssp C---
T ss_pred CCCC
Confidence 8743
No 96
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=71.54 E-value=18 Score=29.74 Aligned_cols=62 Identities=8% Similarity=-0.111 Sum_probs=37.0
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEE-eCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPL-IFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i-~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
+..||+....... .....+...+.+.+++.|..++++ ....+.+. ++.++ .++||||+.+..
T Consensus 4 ~~~I~~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 71 (305)
T 3g1w_A 4 NETYMMITFQSGM--------DYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAID 71 (305)
T ss_dssp -CEEEEEESSTTS--------THHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSS
T ss_pred CceEEEEEccCCC--------hHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4567877764322 133445567777888899998874 33333322 22222 369999998754
No 97
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=70.07 E-value=20 Score=27.59 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=33.4
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEEC
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYT 123 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~ 123 (232)
++..++..+.+.+++.|..+.++.... +.+++...+..+|+|||-
T Consensus 13 nT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~G 58 (161)
T 3hly_A 13 YSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLG 58 (161)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEE
Confidence 577888889999999999887777643 344554445679998884
No 98
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=70.03 E-value=4.8 Score=34.90 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=45.4
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh------------------HHH--H-HhhcCC
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE------------------EIL--F-EKLELV 117 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~------------------e~l--~-~~l~~~ 117 (232)
.|+|..++... ...-....+.++|++.|.++.+....... +.. . ...+.+
T Consensus 6 ki~iI~n~~~~---------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 76 (307)
T 1u0t_A 6 SVLLVVHTGRD---------EATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGC 76 (307)
T ss_dssp EEEEEESSSGG---------GGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------C
T ss_pred EEEEEEeCCCH---------HHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCC
Confidence 58888887542 11234568889999999987665332110 000 0 123467
Q ss_pred CEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 118 NGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 118 dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
|.||.-||.+ +.....+..... ++|++||=.|
T Consensus 77 d~vi~~GGDG-------T~l~a~~~~~~~-----~~pvlgi~~G 108 (307)
T 1u0t_A 77 ELVLVLGGDG-------TFLRAAELARNA-----SIPVLGVNLG 108 (307)
T ss_dssp CCEEEEECHH-------HHHHHHHHHHHH-----TCCEEEEECS
T ss_pred CEEEEEeCCH-------HHHHHHHHhccC-----CCCEEEEeCC
Confidence 8888888865 222333333333 4899999665
No 99
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=69.81 E-value=16 Score=29.64 Aligned_cols=61 Identities=10% Similarity=-0.012 Sum_probs=36.6
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
+.+||++...... .....+...+.+.+++.|..+++.....+.+. ++.++ .++||||+.+.
T Consensus 1 ~~~Igvi~~~~~~--------~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 1 KDTIALVVSTLNN--------PFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CCEEEEEESCSSS--------HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred CcEEEEEecCCCC--------HHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4678988643211 12334556667778888998877654434322 22322 36999999763
No 100
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=69.37 E-value=7.1 Score=33.80 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=45.6
Q ss_pred EEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHH
Q 039121 60 IGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKI 139 (232)
Q Consensus 60 IGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~ 139 (232)
|||..++.. . ...+.++|++.|.++...... .+ .++.+|.||.-||.+ + +
T Consensus 32 i~iv~~~~~----------~----~~~l~~~L~~~g~~v~~~~~~--~~----~~~~~DlvIvlGGDG-------T---~ 81 (278)
T 1z0s_A 32 AAVVYKTDG----------H----VKRIEEALKRLEVEVELFNQP--SE----ELENFDFIVSVGGDG-------T---I 81 (278)
T ss_dssp EEEEESSST----------T----HHHHHHHHHHTTCEEEEESSC--CG----GGGGSSEEEEEECHH-------H---H
T ss_pred EEEEeCCcH----------H----HHHHHHHHHHCCCEEEEcccc--cc----ccCCCCEEEEECCCH-------H---H
Confidence 888887542 1 567888999999988764322 11 246799999999876 1 1
Q ss_pred HHHHHHhcCCCCCccEeehhHH
Q 039121 140 FKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 140 ~~~~l~~~~~~~~~PILGIClG 161 (232)
+..+. ...+. +||+||-.|
T Consensus 82 L~aa~--~~~~~-~PilGIN~G 100 (278)
T 1z0s_A 82 LRILQ--KLKRC-PPIFGINTG 100 (278)
T ss_dssp HHHHT--TCSSC-CCEEEEECS
T ss_pred HHHHH--HhCCC-CcEEEECCC
Confidence 22221 12233 999999876
No 101
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=68.72 E-value=33 Score=27.81 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=38.8
Q ss_pred CCCEEEEeCCC-----CCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 56 YRPVIGILSHP-----GDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 56 ~~PvIGI~~~~-----~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
....||++... ... .....+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 78 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQN--------PFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYS 78 (292)
T ss_dssp CCCEEEEECSSCHHHHTTS--------THHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCC
T ss_pred CCCEEEEEecCCccccccC--------HHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 35689998765 211 13344556777888889998877654433222 12222 47999999875
Q ss_pred C
Q 039121 126 W 126 (232)
Q Consensus 126 ~ 126 (232)
.
T Consensus 79 ~ 79 (292)
T 3k4h_A 79 R 79 (292)
T ss_dssp B
T ss_pred C
Confidence 4
No 102
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=67.36 E-value=4.6 Score=31.99 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=27.2
Q ss_pred HHHHHHhCCCeEEEEeC-CCChHHHHHhh------cCCCEEEECCCCCC
Q 039121 87 YVKFAESGGARVIPLIF-NEPEEILFEKL------ELVNGILYTGGWAK 128 (232)
Q Consensus 87 ~v~~l~~~G~~vv~i~~-~~~~e~l~~~l------~~~dGlIl~GG~~~ 128 (232)
+.+.|++.|++++.... ..+.+.+.+.+ +.+|-||.+||-..
T Consensus 45 L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 45 IKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 34579999998864443 23444443222 35899999998774
No 103
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=66.54 E-value=14 Score=29.78 Aligned_cols=79 Identities=9% Similarity=0.020 Sum_probs=49.3
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC--ChHHHHHhhcCCCEEEECCCCCCCccCh-
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE--PEEILFEKLELVNGILYTGGWAKSGLYY- 133 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~--~~e~l~~~l~~~dGlIl~GG~~~~~~~~- 133 (232)
..+..|.++|.... +.+.....+...+++.+++.|+++..+.... +.+.+.+.+..+|+|||. .|.|.
T Consensus 13 ~~iLii~gsP~~~~----s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~-----~P~y~~ 83 (204)
T 2amj_A 13 SNILIINGAKKFAH----SNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ-----MPGWWM 83 (204)
T ss_dssp CEEEEEECCC----------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE-----EECBTT
T ss_pred cCEEEEEcCCCccc----CcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE-----CCcccc
Confidence 46778888886321 0112455677788888888899998887643 344556667889999986 23222
Q ss_pred ---hHHHHHHHHHH
Q 039121 134 ---DIVEKIFKKIL 144 (232)
Q Consensus 134 ---~~~~~~~~~~l 144 (232)
...+.+++.+.
T Consensus 84 s~pa~LK~~iDrv~ 97 (204)
T 2amj_A 84 GAPWTVKKYIDDVF 97 (204)
T ss_dssp BCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 34566666654
No 104
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=66.54 E-value=21 Score=29.05 Aligned_cols=61 Identities=13% Similarity=-0.009 Sum_probs=37.3
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~ 126 (232)
....||++...... ....-+...+.+.+++.|..+++.....+.+...+ + ++||||+.+..
T Consensus 7 ~~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~-~-~vdgiI~~~~~ 67 (277)
T 3cs3_A 7 QTNIIGVYLADYGG--------SFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPE-K-MVDGAIILDWT 67 (277)
T ss_dssp CCCEEEEEECSSCT--------TTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCT-T-TCSEEEEECTT
T ss_pred CCcEEEEEecCCCC--------hhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhh-c-cccEEEEecCC
Confidence 34689998753211 12333456677788889998887765433222112 2 79999998754
No 105
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=66.13 E-value=28 Score=28.43 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=35.5
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
.+||++...... .....+...+.+.+++.|..+++.....+.+. ++.++ .++||||+.+.
T Consensus 2 ~~Igvi~~~~~~--------~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 2 KTIGLVISTLNN--------PFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp CEEEEEESCSSS--------HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEecCCCC--------HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 468888642211 12334555667778888998877664444322 22322 36999999763
No 106
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=66.04 E-value=30 Score=26.59 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=33.8
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCC--ChHHHHHhhcCCCEEEEC
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNE--PEEILFEKLELVNGILYT 123 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~--~~e~l~~~l~~~dGlIl~ 123 (232)
++..++..+.+.+++.|..+.++.... +.+++...+..+|+|||-
T Consensus 17 nT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~G 63 (159)
T 3fni_A 17 YSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIG 63 (159)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEE
Confidence 567788888899999999888877654 345555556678988884
No 107
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=65.91 E-value=58 Score=27.32 Aligned_cols=62 Identities=13% Similarity=-0.041 Sum_probs=38.7
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHH----HHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEIL----FEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l----~~~l-~~~dGlIl~GG~ 126 (232)
...||++...... ....-+...+.+.+++.|..+++.....+.+.. +.++ .++||||+.+..
T Consensus 62 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 128 (339)
T 3h5o_A 62 SRTVLVLIPSLAN--------TVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLS 128 (339)
T ss_dssp -CEEEEEESCSTT--------CTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEeCCCCC--------HHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 4679998754321 122345567778888899998887655444322 2222 379999998743
No 108
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=65.82 E-value=14 Score=27.57 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=42.0
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHH-HHHHhCCCeEEE-------EeCCCChHHHHHhhcCCCEEEECCCC
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYV-KFAESGGARVIP-------LIFNEPEEILFEKLELVNGILYTGGW 126 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v-~~l~~~G~~vv~-------i~~~~~~e~l~~~l~~~dGlIl~GG~ 126 (232)
+++.+++|++.|.. ...+|+++.-. ++-++.|..+.+ +....+.++ ++.+|+||+-+.-
T Consensus 4 m~mkIvaVTaCptG---------iAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~----I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 4 MSKKLIALCACPMG---------LAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQD----IAEATIIIHSVAV 70 (111)
T ss_dssp CCCEEEEEEEESSC---------HHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHH----HHHCSEEEEEESS
T ss_pred ccccEEEEEcCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHH----HHhCCEEEEEeCC
Confidence 45679999999863 35778877644 556778988766 233334544 5679999999865
Q ss_pred CC
Q 039121 127 AK 128 (232)
Q Consensus 127 ~~ 128 (232)
.+
T Consensus 71 ~v 72 (111)
T 2kyr_A 71 TP 72 (111)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 109
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=65.53 E-value=8.2 Score=35.19 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=41.2
Q ss_pred CCCCCCEEEEeCCCCCCC-CCC-cCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHHHH----HhhcCCCEEEECCC
Q 039121 53 SLNYRPVIGILSHPGDGA-SGR-LSNATNASYISASYVKFAESGGARVIPLIF-NEPEEILF----EKLELVNGILYTGG 125 (232)
Q Consensus 53 ~~~~~PvIGI~~~~~~~~-~~~-~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~l~----~~l~~~dGlIl~GG 125 (232)
....+|.|+|++.-..-. .|. +..++-.+--...+...+++.|++++.... ..+.+.+. +.++++|-||.+||
T Consensus 177 ~V~~~prv~IistGdEl~~~g~~~~~G~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG 256 (419)
T 2fts_A 177 EVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGG 256 (419)
T ss_dssp EEECCCCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESC
T ss_pred EecCCCEEEEEEechhccCCCCCCCCCcEecCchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCC
Confidence 334689999987422100 000 001111111222344578899998865433 23444443 34456899999999
Q ss_pred CCCC
Q 039121 126 WAKS 129 (232)
Q Consensus 126 ~~~~ 129 (232)
....
T Consensus 257 ~s~g 260 (419)
T 2fts_A 257 VSMG 260 (419)
T ss_dssp CSSS
T ss_pred CcCC
Confidence 8743
No 110
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=65.50 E-value=2.2 Score=38.53 Aligned_cols=82 Identities=13% Similarity=-0.021 Sum_probs=49.4
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC-hH-------------------HHHHhhcCCC
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP-EE-------------------ILFEKLELVN 118 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~-~e-------------------~l~~~l~~~d 118 (232)
.|||.+.+.+. ........+++||.+.|..+.+-..... .. ...+.-+.+|
T Consensus 40 ~I~iv~K~~~~---------~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 110 (365)
T 3pfn_A 40 SVLVIKKMRDA---------SLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQID 110 (365)
T ss_dssp EEEEEECTTCG---------GGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCS
T ss_pred EEEEEecCCCH---------HHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCC
Confidence 49999998652 2345567899999999987765221000 00 0011224689
Q ss_pred EEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 119 GILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 119 GlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
-||.-||.+ . ++..+.. ..+...||+||-+|
T Consensus 111 lvI~lGGDG---T-------~L~aa~~--~~~~~~PvlGiN~G 141 (365)
T 3pfn_A 111 FIICLGGDG---T-------LLYASSL--FQGSVPPVMAFHLG 141 (365)
T ss_dssp EEEEESSTT---H-------HHHHHHH--CSSSCCCEEEEESS
T ss_pred EEEEEcChH---H-------HHHHHHH--hccCCCCEEEEcCC
Confidence 999999976 1 1222211 12346899999886
No 111
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=65.26 E-value=5.9 Score=31.54 Aligned_cols=91 Identities=5% Similarity=0.053 Sum_probs=49.3
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHH-HHhCCCeEEEEeCCCC--------------hHHHHHhhcCCCEEEE
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKF-AESGGARVIPLIFNEP--------------EEILFEKLELVNGILY 122 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~-l~~~G~~vv~i~~~~~--------------~e~l~~~l~~~dGlIl 122 (232)
.++.|...+... ..+..++..+.+. +++.|+++..+..... .+.+.+.+..+|+|||
T Consensus 4 kilii~gS~r~~--------g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~ 75 (197)
T 2vzf_A 4 SIVAISGSPSRN--------STTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIV 75 (197)
T ss_dssp EEEEEECCSSTT--------CHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEE
T ss_pred eEEEEECCCCCC--------ChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEE
Confidence 456666665421 2456777777788 8888988887765321 1223345678999998
Q ss_pred CCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehh
Q 039121 123 TGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 123 ~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
.- |.....+....+.++++... ..-.++|+.-++
T Consensus 76 ~s-P~y~~~~p~~lK~~ld~l~~--~~~~gK~~~~~~ 109 (197)
T 2vzf_A 76 AT-PIYKASYTGLLKAFLDILPQ--FALAGKAALPLA 109 (197)
T ss_dssp EE-ECBTTBCCHHHHHHHTTSCT--TTTTTCEEEEEE
T ss_pred Ee-CccCCCCCHHHHHHHHhccc--cccCCCEEEEEE
Confidence 52 22111222334444444311 112357776554
No 112
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=65.09 E-value=5.6 Score=31.32 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=35.8
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC-----CCeEEEEeC-CCChHHHH----Hhh--cCCCEEEEC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESG-----GARVIPLIF-NEPEEILF----EKL--ELVNGILYT 123 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~-----G~~vv~i~~-~~~~e~l~----~~l--~~~dGlIl~ 123 (232)
.+|.++|.+.-..-..|... ..+..++. +.+++. |++++.... ..+.+.+. +.+ +.+|-||.+
T Consensus 4 ~~~rv~IistGde~~~G~~~-d~n~~~l~----~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 78 (167)
T 1uuy_A 4 PEYKVAILTVSDTVSAGAGP-DRSGPRAV----SVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTL 78 (167)
T ss_dssp CSEEEEEEEECHHHHTTSSC-CSHHHHHH----HHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CCcEEEEEEECCcccCCCCc-cCcHHHHH----HHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 46788888742111111111 11223333 345555 887764332 23444443 333 268999999
Q ss_pred CCCCCC
Q 039121 124 GGWAKS 129 (232)
Q Consensus 124 GG~~~~ 129 (232)
||-...
T Consensus 79 GG~g~g 84 (167)
T 1uuy_A 79 GGTGFT 84 (167)
T ss_dssp SCCSSS
T ss_pred CCCCCC
Confidence 998743
No 113
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=65.03 E-value=16 Score=30.25 Aligned_cols=86 Identities=15% Similarity=0.031 Sum_probs=51.8
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC--ChHHHHHhhcCCCEEEECCCCCCCccCh
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE--PEEILFEKLELVNGILYTGGWAKSGLYY 133 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~--~~e~l~~~l~~~dGlIl~GG~~~~~~~~ 133 (232)
|+.+..|.++|.... ..+.....+...+.+.+++.|.++..+.... +.+...+.+..+|+|||.- |.-.....
T Consensus 25 M~kiLiI~gsp~~~~----s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~~-P~y~~~~p 99 (218)
T 3rpe_A 25 MSNVLIINAMKEFAH----SKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQM-PAWWMGEP 99 (218)
T ss_dssp CCCEEEEECCCCBTT----BCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEEE-ECBTTBCC
T ss_pred CcceEEEEeCCCccc----CCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEEC-ChHhccCC
Confidence 456888888886321 0112344566777888888999998877543 3344556678899999861 21111112
Q ss_pred hHHHHHHHHHHHh
Q 039121 134 DIVEKIFKKILEK 146 (232)
Q Consensus 134 ~~~~~~~~~~l~~ 146 (232)
...+.+++.+...
T Consensus 100 ~~lK~~iD~v~~~ 112 (218)
T 3rpe_A 100 WILKKYIDEVFTD 112 (218)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3466666666543
No 114
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=64.84 E-value=24 Score=28.90 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=37.4
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
...||++...... .....+...+.+.+++.|..++..... +.+. ++.++ .++||||+.+.
T Consensus 2 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 2 NLKLGFLVKQPEE--------PWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp CEEEEEEESCTTS--------HHHHHHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CeEEEEEeCCCCc--------hHHHHHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3578988753321 233445567777888889988777653 4332 22322 36999999874
No 115
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=64.23 E-value=40 Score=27.54 Aligned_cols=60 Identities=12% Similarity=-0.030 Sum_probs=36.1
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCC-eEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGA-RVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~-~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
.+||++...... .....+...+.+.+++.|. .+++.....+.+. ++..+ .++||||+.+.
T Consensus 3 ~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (309)
T 2fvy_A 3 TRIGVTIYKYDD--------NFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 68 (309)
T ss_dssp EEEEEEESCTTS--------HHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEEeccCCc--------HHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 468888643211 1233455667778888997 8877665434322 22222 46999999764
No 116
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=63.11 E-value=22 Score=29.77 Aligned_cols=94 Identities=11% Similarity=0.002 Sum_probs=53.3
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC------------hHHHHHhhcCCCEEEECC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP------------EEILFEKLELVNGILYTG 124 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~------------~e~l~~~l~~~dGlIl~G 124 (232)
+.+++|.+.+..+ ..+..+...+.+.+++.|+++.++..... ...+.+.+..+|+|||.
T Consensus 35 mkIliI~GS~r~~--------s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~- 105 (247)
T 2q62_A 35 PRILILYGSLRTV--------SYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWV- 105 (247)
T ss_dssp CEEEEEECCCCSS--------CHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEE-
T ss_pred CeEEEEEccCCCC--------CHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEE-
Confidence 4577788777532 23456677777888888998887764321 23455567789999985
Q ss_pred CCCCCccChhHHHHHHHHHHHhc---CCCCCccEeehh
Q 039121 125 GWAKSGLYYDIVEKIFKKILEKN---DAGDHFPVYAIC 159 (232)
Q Consensus 125 G~~~~~~~~~~~~~~~~~~l~~~---~~~~~~PILGIC 159 (232)
.|.....+....+.++++..... ..=.+||+.-|+
T Consensus 106 sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~ 143 (247)
T 2q62_A 106 SPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQ 143 (247)
T ss_dssp EECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEE
T ss_pred eCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEE
Confidence 22211222234555555542210 012357766544
No 117
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=62.73 E-value=40 Score=24.84 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=39.3
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHH-HHHHhCCCeEEE-------EeCCCChHHHHHhhcCCCEEEECCCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYV-KFAESGGARVIP-------LIFNEPEEILFEKLELVNGILYTGGWA 127 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v-~~l~~~G~~vv~-------i~~~~~~e~l~~~l~~~dGlIl~GG~~ 127 (232)
+.+++|+..|.. ....|+++.-. ++-++.|.++.+ +....+.++ ++.+|+||+-+.-.
T Consensus 3 ~kivaVTaCptG---------iAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~----I~~Ad~VIiA~d~~ 68 (106)
T 2r48_A 3 AKLLAITSCPNG---------IAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEE----IREADAIIIAADRS 68 (106)
T ss_dssp CEEEEEEECSSC---------SHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHH----HHHCSEEEEEESSC
T ss_pred ceEEEEecCCCc---------HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHH----HHhCCEEEEEeCCc
Confidence 468999999863 35778877644 455677887765 222234444 56799999998654
No 118
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=62.05 E-value=38 Score=28.31 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=35.9
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC-CCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESG-GARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~-G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..+||++... .. .....+...+.+.+++. |..+++.....+.+. ++.++ .++||||+.+.
T Consensus 6 ~~~Igvi~~~-~~--------~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 71 (325)
T 2x7x_A 6 HFRIGVAQCS-DD--------SWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISAN 71 (325)
T ss_dssp CCEEEEEESC-CS--------HHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CeEEEEEecC-CC--------HHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4689998753 21 12223445566677777 888887765444322 22322 47999999864
No 119
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=61.38 E-value=4.5 Score=31.94 Aligned_cols=69 Identities=13% Similarity=0.091 Sum_probs=35.0
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHH----HHhCCCeEEEEeC-CCChHHH----HHhhc-CCCEEEECCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKF----AESGGARVIPLIF-NEPEEIL----FEKLE-LVNGILYTGG 125 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~----l~~~G~~vv~i~~-~~~~e~l----~~~l~-~~dGlIl~GG 125 (232)
+.|.++|++--.+...|...+ .+..+ +.+. +++.|+++..... ..+.+.+ .+.++ .+|-||.+||
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~D-~n~~~----l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTREN-KALPL----LQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSCC-CHHHH----HHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CccEEEEEEECCcccCCceec-cHHHH----HHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 457788876432111122211 22233 3446 8889987754332 2344443 34444 4999999998
Q ss_pred CCCC
Q 039121 126 WAKS 129 (232)
Q Consensus 126 ~~~~ 129 (232)
-...
T Consensus 79 ~g~~ 82 (167)
T 2g2c_A 79 TGIR 82 (167)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 8743
No 120
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=61.19 E-value=50 Score=26.95 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=38.1
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
...|||+...... ....-+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+..
T Consensus 16 s~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 16 TTTVGVIIPDISS--------IFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp CCEEEEEESCTTS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCeEEEEeCCCCC--------chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689998753211 12334556677788889998887765444322 22222 479999998743
No 121
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=60.65 E-value=33 Score=28.71 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=37.0
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cC--CCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-EL--VNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~--~dGlIl~GG 125 (232)
..+||++...... ....-+...+.+.+++.|..+++.....+.+. ++.++ .+ +||||+.+.
T Consensus 5 s~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 5 QTTLACSFRSLTN--------PYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp CCEEEEEESCTTS--------HHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred ccEEEEEecCCCc--------HHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 4579998753211 12334455667778888999887765444322 22222 36 999999764
No 122
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=60.58 E-value=29 Score=28.52 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=39.4
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchh-hhHHHHHHHHHhCCCeEEEEeCCCChHHH----HHhh-cCCCEEEECCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNAS-YISASYVKFAESGGARVIPLIFNEPEEIL----FEKL-ELVNGILYTGG 125 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~-yi~~s~v~~l~~~G~~vv~i~~~~~~e~l----~~~l-~~~dGlIl~GG 125 (232)
....||++....... ... .+...+.+.+++.|..+++.....+.+.. +.+. .++||||+.+.
T Consensus 12 ~s~~Igvi~~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 12 RSNTFGIITDYVSTT--------PYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp CCCEEEEEESSTTTC--------CSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCEEEEEeCCCcCc--------ccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 346899987643221 122 44567778899999999887765443322 2222 37999999873
No 123
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=60.58 E-value=36 Score=30.66 Aligned_cols=78 Identities=9% Similarity=0.142 Sum_probs=46.3
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeC-CC---ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCcc
Q 039121 79 NASYISASYVKFAESGGARVIPLIF-NE---PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFP 154 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~-~~---~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~P 154 (232)
++..++..+.+-+++.|..++++.. +. +.+++.+.+.++|||+| |.|......+......+.........++..=
T Consensus 278 nTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivl-GspT~~~~~~p~~~~~l~~l~~~~~~~K~~~ 356 (410)
T 4dik_A 278 FVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIF-GVSTYEAEIHPLMRFTLLEIIDKANYEKPVL 356 (410)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEE-EECCTTSSSCHHHHHHHHHHHHHCCCCCEEE
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEE-EeCCcCCcCCHHHHHHHHHHHhcccCCCEEE
Confidence 5667888889999999998876532 22 33555555678999999 3333222233344455555544433333444
Q ss_pred Eee
Q 039121 155 VYA 157 (232)
Q Consensus 155 ILG 157 (232)
++|
T Consensus 357 ~FG 359 (410)
T 4dik_A 357 VFG 359 (410)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 124
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=60.42 E-value=69 Score=26.90 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=38.9
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
....||++...... .....+...+.+.+++.|..+++.....+.+. ++.++ .++||||+.+..
T Consensus 67 ~~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 67 RVNLVAVIIPSLSN--------MVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp CCSEEEEEESCSSS--------SSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCEEEEEeCCCCc--------HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 34689998753221 12334556677778888999887765544432 22222 369999998643
No 125
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=60.06 E-value=16 Score=29.10 Aligned_cols=79 Identities=10% Similarity=0.037 Sum_probs=44.3
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC--------------hHHHHHhhcCCCEEE
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP--------------EEILFEKLELVNGIL 121 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~--------------~e~l~~~l~~~dGlI 121 (232)
|+.++.|.+.+..+ ..+..+...+.+.++ .|+++..+....- ...+.+.+..+|+||
T Consensus 2 M~kilii~gS~r~~--------s~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV 72 (192)
T 3fvw_A 2 SKRILFIVGSFSEG--------SFNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIW 72 (192)
T ss_dssp -CEEEEEESCCSTT--------CHHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEE
T ss_pred CCEEEEEEcCCCCC--------CHHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEE
Confidence 45577888877632 134456666666665 5777776644211 123455677899999
Q ss_pred ECCCCCCCccChhHHHHHHHHHH
Q 039121 122 YTGGWAKSGLYYDIVEKIFKKIL 144 (232)
Q Consensus 122 l~GG~~~~~~~~~~~~~~~~~~l 144 (232)
|. -|.....+....+.++++..
T Consensus 73 ~~-sP~y~~~~p~~lK~~iD~~~ 94 (192)
T 3fvw_A 73 IF-SPVYNYAIPGPVKNLLDWLS 94 (192)
T ss_dssp EE-CCCBTTBCCHHHHHHHHHHT
T ss_pred EE-CcccccCCCHHHHHHHHHhh
Confidence 86 12211122245666666655
No 126
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=59.77 E-value=75 Score=26.51 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=39.8
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
....||++...... . ......+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+..
T Consensus 60 ~~~~Igvi~~~~~~-----~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 60 STQTLGLVVTNTLY-----H-GIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp CCSEEEEEECTTTT-----S-TTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCEEEEEecCCcc-----c-ChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34689998754100 1 123344556777888899999988775544332 22222 379999998743
No 127
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=59.05 E-value=41 Score=27.07 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=37.0
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTG 124 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~G 124 (232)
...||++...... ....-+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+
T Consensus 8 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 8 SKLIGLLLPDMSN--------PFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp --CEEEEESCTTS--------HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CCEEEEEECCCCC--------HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 4568988753211 12334556677788889999988776554332 22222 4799999987
No 128
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=58.85 E-value=41 Score=25.03 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=14.0
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 039121 85 ASYVKFAESGGARVIPLIFN 104 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~ 104 (232)
....++|.+.|.++.++...
T Consensus 21 ~~v~~~L~~~g~~V~pVnP~ 40 (122)
T 3ff4_A 21 YLAAERLKSHGHEFIPVGRK 40 (122)
T ss_dssp HHHHHHHHHHTCCEEEESSS
T ss_pred HHHHHHHHHCCCeEEEECCC
Confidence 45666787888887777543
No 129
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=58.21 E-value=63 Score=26.27 Aligned_cols=62 Identities=10% Similarity=-0.083 Sum_probs=37.3
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChH-------HHHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEE-------ILFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e-------~l~~~l-~~~dGlIl~GG~ 126 (232)
...||++...... ....-+...+.+.+++.|..+.+.....+.+ .++.+. .++||||+.+..
T Consensus 8 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 77 (290)
T 2rgy_A 8 LGIIGLFVPTFFG--------SYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHD 77 (290)
T ss_dssp CCEEEEECSCSCS--------HHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCeEEEEeCCCCC--------chHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCC
Confidence 4689998753211 1233345566777888999887765433321 233322 369999998744
No 130
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=58.04 E-value=24 Score=28.84 Aligned_cols=77 Identities=5% Similarity=-0.082 Sum_probs=45.0
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC-CCeEEEEeCC-------------------------CChHHHH
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESG-GARVIPLIFN-------------------------EPEEILF 111 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~-G~~vv~i~~~-------------------------~~~e~l~ 111 (232)
.++.|.+.+... ..+..++..+++.+++. |+++.++... .+.+.+.
T Consensus 3 kIliI~gS~r~~--------s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 74 (242)
T 1sqs_A 3 KIFIYAGVRNHN--------SKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIK 74 (242)
T ss_dssp EEEEEECCCCTT--------CHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHH
T ss_pred eEEEEECCCCCC--------ChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHH
Confidence 466777776521 24567777888888887 9988777532 1222344
Q ss_pred HhhcCCCEEEECCCCCCCccChhHHHHHHHHH
Q 039121 112 EKLELVNGILYTGGWAKSGLYYDIVEKIFKKI 143 (232)
Q Consensus 112 ~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~ 143 (232)
+.+..+|+|||.- |..........+.++++.
T Consensus 75 ~~l~~AD~iI~~s-P~y~~~~p~~lK~~iDr~ 105 (242)
T 1sqs_A 75 KELLESDIIIISS-PVYLQNVSVDTKNFIERI 105 (242)
T ss_dssp HHHHHCSEEEEEE-EECSSSCCHHHHHHHHHT
T ss_pred HHHHHCCEEEEEc-cccccCCCHHHHHHHHHH
Confidence 4567899999852 221112223455555554
No 131
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=57.58 E-value=35 Score=27.76 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=40.4
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHH----HHhh-cCCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEIL----FEKL-ELVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l----~~~l-~~~dGlIl~GG~ 126 (232)
....||++...... .....+...+.+.+++.|..+++.....+.+.. +.+. .++||||+.+..
T Consensus 7 ~~~~Igvv~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 7 RSNVVGLIVSDIEN--------VFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp CCCEEEEEESCTTS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CCcEEEEEECCCcc--------hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45789998753221 123345567778888899999888765544322 2222 379999998854
No 132
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=57.39 E-value=42 Score=27.64 Aligned_cols=61 Identities=11% Similarity=-0.048 Sum_probs=36.1
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
.+||++...... ....-+...+.+.+++.|..+++.....+.+. ++.++ .++||||+.+..
T Consensus 3 ~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (306)
T 2vk2_A 3 LTVGFSQVGSES--------GWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVV 68 (306)
T ss_dssp CEEEEEECCCCS--------HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred eEEEEEeCCCCC--------HHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 468888764211 12223445566778888998887765444322 22222 479999998744
No 133
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=57.35 E-value=32 Score=27.61 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=36.9
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
..+||++...... ....-+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+..
T Consensus 3 s~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 69 (275)
T 3d8u_A 3 AYSIALIIPSLFE--------KACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSE 69 (275)
T ss_dssp -CEEEEEESCSSC--------HHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSC
T ss_pred ceEEEEEeCCCcc--------ccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3578988753211 12233455667788889998877665444322 22322 369999998743
No 134
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=56.77 E-value=60 Score=26.38 Aligned_cols=65 Identities=18% Similarity=0.050 Sum_probs=37.0
Q ss_pred CCEEEEeCCC-CCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh----HHHHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHP-GDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE----EILFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~-~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~----e~l~~~l-~~~dGlIl~GG~ 126 (232)
..+||++... ..+. ......-+...+.+.+++.|..+++.....+. +.++.+. .++||||+.+..
T Consensus 4 s~~Ig~i~~~~~~~~-----~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQ-----VNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSIN 74 (287)
T ss_dssp CCEEEECCCCCCTTC-----SCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCC
T ss_pred eeEEEEEeccccccc-----CChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecC
Confidence 4579998753 2000 01123345566777888899988765432221 2233333 369999998744
No 135
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=56.39 E-value=45 Score=27.82 Aligned_cols=61 Identities=7% Similarity=-0.107 Sum_probs=35.9
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEE-eCCCChH----HHHHhh-cCCCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPL-IFNEPEE----ILFEKL-ELVNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i-~~~~~~e----~l~~~l-~~~dGlIl~GG 125 (232)
...||++...... .....+...+.+.+++.|..+++. +...+.+ .++.++ +++||||+.+.
T Consensus 3 ~~~Igvi~~~~~~--------~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 3 AERIAFIPKLVGV--------GFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp CCEEEEECSSSSS--------HHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEeCCCCC--------hHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4679998753211 123345566677788889888764 2233322 233333 46999999763
No 136
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=56.36 E-value=34 Score=28.20 Aligned_cols=63 Identities=13% Similarity=0.024 Sum_probs=38.8
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGWA 127 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~~ 127 (232)
...||++...... ....-+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+...
T Consensus 15 s~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 82 (303)
T 3kke_A 15 SGTIGLIVPDVNN--------AVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRED 82 (303)
T ss_dssp --CEEEEESCTTS--------TTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTT
T ss_pred CCEEEEEeCCCcC--------hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4679988754321 12334556777888889999988776544332 22222 3799999987543
No 137
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=55.81 E-value=68 Score=25.81 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=37.7
Q ss_pred CCEEEEeCCC--CCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHP--GDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~--~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
..+||++... ... .....+...+.+.+++.|..+++.....+.+. ++.++ .++||||+.+..
T Consensus 19 ~~~Ig~i~~~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 19 TQTLGLVVTNTLYHG--------IYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp CCEEEEEECGGGCC----------CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CceEEEEeCCcccCC--------chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 4689998753 211 12334556677788889998877654444322 23322 469999998653
No 138
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=55.36 E-value=52 Score=27.85 Aligned_cols=62 Identities=13% Similarity=0.061 Sum_probs=37.9
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHH----HHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEIL----FEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l----~~~l-~~~dGlIl~GG~ 126 (232)
...||++...... ....-+...+.+.+++.|..+++.....+.+.. +.++ .++||||+.+..
T Consensus 70 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 136 (355)
T 3e3m_A 70 SGFVGLLLPSLNN--------LHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDG 136 (355)
T ss_dssp -CEEEEEESCSBC--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCEEEEEeCCCCc--------hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4579998653211 122334566777888899999887655444322 2222 379999998644
No 139
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=55.07 E-value=52 Score=26.79 Aligned_cols=65 Identities=8% Similarity=-0.033 Sum_probs=38.9
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh---HHHHHhh--cCCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE---EILFEKL--ELVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~---e~l~~~l--~~~dGlIl~GG~ 126 (232)
....|||+....... + ....-+...+.+.+++.|..+++.....+. ..+.+.+ .++||||+.+..
T Consensus 7 ~s~~Igvv~~~~~~~-----~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (288)
T 3gv0_A 7 KTNVIALVLSVDEEL-----M-GFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIE 76 (288)
T ss_dssp CCCEEEEECBCCCCS-----S-CHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCC
T ss_pred CCCEEEEEecCCccc-----c-HHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCC
Confidence 356899987643210 1 123345556677788889988876544322 2233323 479999998643
No 140
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=55.01 E-value=14 Score=33.35 Aligned_cols=76 Identities=18% Similarity=0.110 Sum_probs=37.2
Q ss_pred CCCCCCEEEEeCCCCCCC--CCCc--CCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHH----HHHhhcCCCEEEEC
Q 039121 53 SLNYRPVIGILSHPGDGA--SGRL--SNATNASYISASYVKFAESGGARVIPLIF-NEPEEI----LFEKLELVNGILYT 123 (232)
Q Consensus 53 ~~~~~PvIGI~~~~~~~~--~~~~--~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~----l~~~l~~~dGlIl~ 123 (232)
....+|.|+|.+.-..-. .|.. ..++-.+--...+...+++.|++++.... ..+.+. +.+.++++|-||.+
T Consensus 178 ~V~~~prv~IistGdEl~~~~g~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~Dlvitt 257 (396)
T 1wu2_A 178 PVKVKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLIT 257 (396)
T ss_dssp EEECCCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC
T ss_pred eecCCCEEEEEEcCcccccCCCCcccCCCcEecchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEe
Confidence 335689999987422110 0000 00111111222344578899998865433 233333 34445579999999
Q ss_pred CCCCC
Q 039121 124 GGWAK 128 (232)
Q Consensus 124 GG~~~ 128 (232)
||...
T Consensus 258 GG~s~ 262 (396)
T 1wu2_A 258 GGSAF 262 (396)
T ss_dssp -----
T ss_pred CCCCC
Confidence 98763
No 141
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=54.69 E-value=36 Score=25.46 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhc--CCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLE--LVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~--~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
..+.++++.....+++++-+.. +.+...++ .+-+|||+||...++ ++++.+.+. ++|||-+=...
T Consensus 42 ~~~~~~~~~~~~~l~I~~G~r~-~~~l~a~~~~~~~~iIlt~g~~~~~-------~i~~~A~~~-----~ipvl~t~~~T 108 (139)
T 2ioj_A 42 QSALRYLREARNAALVTGGDRS-DLLLTALEMPNVRCLILTGNLEPVQ-------LVLTKAEER-----GVPVILTGHDT 108 (139)
T ss_dssp HHHHHHHHTCSSEEEEEETTCH-HHHHHHTTCTTEEEEEEETTCCCCH-------HHHHHHHHH-----TCCEEECSSCH
T ss_pred HHHHHHHhcCCCEEEEEcCCHH-HHHHHHHhCCCCcEEEEcCCCCCCH-------HHHHHHHHC-----CCeEEEECCCH
Confidence 3566667654235666654432 33333343 678999999987433 234555554 49999887655
Q ss_pred HHHHHH
Q 039121 163 ELLSMI 168 (232)
Q Consensus 163 QlL~~~ 168 (232)
--.+..
T Consensus 109 ~~~~~~ 114 (139)
T 2ioj_A 109 LTAVSR 114 (139)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 142
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=53.31 E-value=32 Score=29.47 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=28.4
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF 103 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~ 103 (232)
..|.-|.++|... ....-+...+++.+++.|.+|.++..
T Consensus 23 MKiLII~aHP~~~--------S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 23 MKVLLIYAHPEPR--------SLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp CEEEEEECCSCTT--------SHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred CeEEEEEeCCCCc--------cHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3467788888632 13445778889999999999988763
No 143
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=52.72 E-value=61 Score=23.83 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=38.5
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHH-HHHHhCCCeEEE-------EeCCCChHHHHHhhcCCCEEEECCCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYV-KFAESGGARVIP-------LIFNEPEEILFEKLELVNGILYTGGWA 127 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v-~~l~~~G~~vv~-------i~~~~~~e~l~~~l~~~dGlIl~GG~~ 127 (232)
+.+++|++.|... ...|+++.-. ++-++.|..+.+ +....+.++ ++.+|+||+-+.-.
T Consensus 3 ~kivaVTaCptGi---------AhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~----I~~Ad~VIiA~d~~ 68 (106)
T 2r4q_A 3 AKILAVTACPTGI---------AHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQE----IEDAPAIIVAADKQ 68 (106)
T ss_dssp CCEEEEEECSCC-----------CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHH----HHHCSCEEEEESSC
T ss_pred ceEEEEecCCCcH---------HHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHH----HHhCCEEEEEeCCc
Confidence 4689999998643 4678877644 456677887765 222234444 56799999998654
No 144
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=52.59 E-value=36 Score=27.09 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=36.6
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..+||++...... ....-+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+.
T Consensus 2 s~~Igvi~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 2 DKVVAIIVTRLDS--------LSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CCEEEEEESCTTC--------HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCEEEEEeCCCCC--------ccHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3578888743211 12233455666778888998887765444322 22222 46999999874
No 145
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=52.05 E-value=30 Score=28.08 Aligned_cols=64 Identities=11% Similarity=-0.058 Sum_probs=36.6
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC--CCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF--NEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~--~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
...||++...... .......+...+.+.+++.|..+.++.. ..+.+. ++.++ .++||||+.+..
T Consensus 5 ~~~Ig~v~~~~~~------~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 5 QYYMICIPKVLDD------SSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp CCEEEEECSCCCS------SSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred CcEEEEEeCCCCC------CchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 4579998753210 0112333455667778888998877654 223221 22222 469999998744
No 146
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=51.81 E-value=44 Score=27.12 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCe-EEEEeCCCChHH----HHHhh-cCCCEEEECC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGAR-VIPLIFNEPEEI----LFEKL-ELVNGILYTG 124 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~-vv~i~~~~~~e~----l~~~l-~~~dGlIl~G 124 (232)
....||++...... ....-+...+.+.+++.|.. +.+.....+.+. ++.+. .++||||+.+
T Consensus 9 ~~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 9 KSKMIGIIIPDLNN--------RFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCEEEEEESCTTS--------HHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCEEEEEeCCCCC--------hhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 35789998754221 12334556777888889999 766655444332 22222 3799999987
No 147
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=51.45 E-value=97 Score=25.79 Aligned_cols=62 Identities=21% Similarity=0.167 Sum_probs=37.8
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
...||++...... .....+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+..
T Consensus 63 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 129 (332)
T 2o20_A 63 TTTVGVILPTITS--------TYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSS 129 (332)
T ss_dssp CCEEEEEESCTTC--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSC
T ss_pred CCEEEEEeCCCCC--------cHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4679998743211 12233455667778889999887765444322 22222 469999998753
No 148
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=51.34 E-value=3.9 Score=32.60 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=31.8
Q ss_pred cCCCEEEECCCCCCCc--cChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHc
Q 039121 115 ELVNGILYTGGWAKSG--LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVS 170 (232)
Q Consensus 115 ~~~dGlIl~GG~~~~~--~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~G 170 (232)
..+|.||+-||=+.+. .-.+..+++++..++.. ..|.||| ||-|.+-.|
T Consensus 83 ~~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~-----~kiiGvC--Fms~F~kag 133 (157)
T 2r47_A 83 GNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEG-----GELMGLC--YMDMFARAG 133 (157)
T ss_dssp CCEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEE-----EEEEEEE--ETTHHHHTT
T ss_pred CCCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCC-----CCEEEEE--hHHHHHHcC
Confidence 3689999999976321 22345677777776443 6799999 444444334
No 149
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=51.30 E-value=43 Score=27.54 Aligned_cols=69 Identities=9% Similarity=0.058 Sum_probs=38.4
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGWA 127 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~~ 127 (232)
....||++....... .........+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+...
T Consensus 21 ~~~~Igvi~~~~~~~---~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 94 (305)
T 3huu_A 21 KTLTIGLIQKSSAPE---IRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLK 94 (305)
T ss_dssp CCCEEEEECSCCSHH---HHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBT
T ss_pred CCCEEEEEeCCCccc---cccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcC
Confidence 457899987641100 000112334555667778888998877654433221 12222 3799999987543
No 150
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=50.75 E-value=34 Score=29.39 Aligned_cols=78 Identities=8% Similarity=0.025 Sum_probs=46.2
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC-------------hHHHHHhhcCCCEEEEC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP-------------EEILFEKLELVNGILYT 123 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~-------------~e~l~~~l~~~dGlIl~ 123 (232)
+.|++|.+.+..+ ..+..+...+.+.+++.|+++.++..... ..++.+.+..+|+|||.
T Consensus 59 mKILiI~GS~R~~--------S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~a 130 (279)
T 2fzv_A 59 VRILLLYGSLRAR--------SFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWC 130 (279)
T ss_dssp CEEEEEESCCSSS--------CHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEE
T ss_pred CEEEEEEeCCCCC--------CHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEE
Confidence 3467777776532 23456677778888888998887754321 13345567789999985
Q ss_pred CCCCCCccChhHHHHHHHHH
Q 039121 124 GGWAKSGLYYDIVEKIFKKI 143 (232)
Q Consensus 124 GG~~~~~~~~~~~~~~~~~~ 143 (232)
.|.....+....+.++++.
T Consensus 131 -SP~Yn~sipg~LKn~IDrl 149 (279)
T 2fzv_A 131 -SPERHGQITSVMKAQIDHL 149 (279)
T ss_dssp -EEEETTEECHHHHHHHHHS
T ss_pred -cCccccCcCHHHHHHHHHH
Confidence 1211111223455556554
No 151
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=50.47 E-value=21 Score=27.86 Aligned_cols=43 Identities=14% Similarity=0.093 Sum_probs=27.4
Q ss_pred HHHHHHhCCCeEEEEeC-CCChHHH----HHhhc--CCCEEEECCCCCCC
Q 039121 87 YVKFAESGGARVIPLIF-NEPEEIL----FEKLE--LVNGILYTGGWAKS 129 (232)
Q Consensus 87 ~v~~l~~~G~~vv~i~~-~~~~e~l----~~~l~--~~dGlIl~GG~~~~ 129 (232)
+.+.+++.|+.++.... ..+.+.+ .+.++ .+|-||.+||-...
T Consensus 26 l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 75 (164)
T 2is8_A 26 IREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLA 75 (164)
T ss_dssp HHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred HHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 34568889987764332 2344443 34444 68999999998743
No 152
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=49.77 E-value=60 Score=26.31 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=37.5
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..+||++...... ....-+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+.
T Consensus 8 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 8 TGMLLVMVSNIAN--------PFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp CCEEEEEESCTTS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCEEEEEeCCCCC--------chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4689998753211 12333456677788889999887765444322 22222 36999999864
No 153
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=49.42 E-value=58 Score=26.53 Aligned_cols=60 Identities=8% Similarity=-0.075 Sum_probs=35.1
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEe--CCCChHH----HHHhh-cCCCEEEECCC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLI--FNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~--~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
..||++...... .....+...+.+.+++.|..+++.. ...+.+. ++..+ .++||||+.+.
T Consensus 2 ~~Igvi~~~~~~--------~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 2 AEYAVVLKTLSN--------PFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp CEEEEEESCSSS--------HHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred cEEEEEeCCCCc--------hHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 368887642211 1233455666777888899887765 3333322 22322 36999999864
No 154
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=48.59 E-value=90 Score=25.24 Aligned_cols=61 Identities=7% Similarity=-0.055 Sum_probs=35.4
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEe-CCCChHH----HHHhh-cCCCEEEECCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLI-FNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~-~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
...||++...... .....+...+.+.+++.|.+++.+. ...+.+. ++.++ .++||||+.+.
T Consensus 4 ~~~Ig~i~~~~~~--------~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 4 EKTVVNISKVDGM--------PWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp CEEEEEECSCSSC--------HHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeccCCC--------hHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3578988753211 1233455667778888998876543 2223222 22322 46999999864
No 155
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=48.51 E-value=90 Score=25.64 Aligned_cols=61 Identities=18% Similarity=0.079 Sum_probs=35.3
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC-CCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF-NEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~-~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
+..||++..... + ....+...+.+++++.|.+++.... ..+.+. ++.++ .++||||+.+..
T Consensus 1 ~~~Ig~i~~~~~-------~--~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 67 (313)
T 2h3h_A 1 MLTIGVIGKSVH-------P--YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSD 67 (313)
T ss_dssp CCEEEEECSCSS-------H--HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CeEEEEEeCCCc-------H--HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 357888864211 1 2333455666778888998876642 223222 22322 479999998643
No 156
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=47.52 E-value=1e+02 Score=25.07 Aligned_cols=67 Identities=9% Similarity=-0.002 Sum_probs=38.8
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC--ChHHHHHhh--cCCCEEEECCCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE--PEEILFEKL--ELVNGILYTGGWA 127 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~--~~e~l~~~l--~~~dGlIl~GG~~ 127 (232)
...||++....... ..+ ....-+...+.+.+++.|..+++..... ....+.+.+ .++||||+.+...
T Consensus 6 s~~Igvi~~~~~~~---~~~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 76 (294)
T 3qk7_A 6 TDAIALAYPSRPRV---LNN-STFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQP 76 (294)
T ss_dssp CCEEEEEEESCSGG---GSC-HHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCS
T ss_pred cceEEEEecCCCcc---ccC-hhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCC
Confidence 46799887532100 111 1233455667778888999988776542 112232323 3799999987543
No 157
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=46.83 E-value=61 Score=24.93 Aligned_cols=40 Identities=8% Similarity=0.036 Sum_probs=25.8
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCC--CeEEEEeCC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGG--ARVIPLIFN 104 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G--~~vv~i~~~ 104 (232)
.++.|...+... ...+..+...+.+.+++.| +++..+...
T Consensus 3 kilii~~S~~~~-------~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 3 KVLVLKSSILAG-------YSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp EEEEEECCSSGG-------GCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred eEEEEEeCCCCC-------CChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 466677776521 1245667777888888876 788777643
No 158
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=46.61 E-value=35 Score=27.42 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=45.9
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCC-------CChHHHHHhhcCCCEEEECCCCCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFN-------EPEEILFEKLELVNGILYTGGWAKS 129 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~-------~~~e~l~~~l~~~dGlIl~GG~~~~ 129 (232)
+.++.|.++|... .+-+.+.+++.+++.|.++.++... .+.+...+.+..+|+|||. -|.-.
T Consensus 2 mkiLiI~gsp~~~----------~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~-~P~y~ 70 (192)
T 3f2v_A 2 PKTLIILAHPNIS----------QSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQ-FPIYW 70 (192)
T ss_dssp CCEEEEECCTTGG----------GCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEE-EECBT
T ss_pred CEEEEEEeCCCcc----------HHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEE-cChhh
Confidence 4577788887532 1346777888888889888777531 2333445567899999985 11111
Q ss_pred ccChhHHHHHHHHHH
Q 039121 130 GLYYDIVEKIFKKIL 144 (232)
Q Consensus 130 ~~~~~~~~~~~~~~l 144 (232)
.......+.+++.+.
T Consensus 71 ~~~pa~lK~~iDrv~ 85 (192)
T 3f2v_A 71 FNCPPLLKQWLDEVL 85 (192)
T ss_dssp TBCCHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHh
Confidence 111134556666654
No 159
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=46.56 E-value=32 Score=27.18 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=32.2
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCC----------------------hHHHHHhhcCCCEEEEC
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEP----------------------EEILFEKLELVNGILYT 123 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~----------------------~e~l~~~l~~~dGlIl~ 123 (232)
.+..++..+.+.+++.|+++..+..... .+.+.+.+..+|+|||.
T Consensus 19 ~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~g 85 (211)
T 1ydg_A 19 TGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFS 85 (211)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEE
Confidence 4677888888999999998888775431 01233446789999985
No 160
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=46.28 E-value=51 Score=26.97 Aligned_cols=68 Identities=7% Similarity=-0.011 Sum_probs=37.9
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH---H-HHhh-cCCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI---L-FEKL-ELVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~---l-~~~l-~~~dGlIl~GG~ 126 (232)
....|||+........ .. .....-+...+.+.+++.|..+++.....+.+. + +.+. .++||||+.+..
T Consensus 6 ~s~~Igvi~~~~~~~~--~~-~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPI--RL-NPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp CSCEEEEECSCCCHHH--HS-CHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred CCcEEEEEeecCCccc--cc-ChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 3468999874211000 01 112334556677788889998877654333221 1 2222 479999998754
No 161
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=46.22 E-value=58 Score=25.79 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=27.6
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC--CCeEEEEeC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESG--GARVIPLIF 103 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~--G~~vv~i~~ 103 (232)
+.++.|.+.|.... ..+..+...+++.+++. |+++..+..
T Consensus 2 mkiLii~gSpr~~~-------s~t~~l~~~~~~~~~~~~~g~~v~~~dL 43 (212)
T 3r6w_A 2 SRILAVHASPRGER-------SQSRRLAEVFLAAYREAHPQARVARREV 43 (212)
T ss_dssp CCEEEEECCSCSTT-------CHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred CEEEEEEeCCCCCC-------CHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 45778888876411 24556777888888877 888887754
No 162
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=46.18 E-value=60 Score=26.37 Aligned_cols=62 Identities=21% Similarity=0.106 Sum_probs=35.2
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEE-eCCCChH----HHHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPL-IFNEPEE----ILFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i-~~~~~~e----~l~~~l-~~~dGlIl~GG~ 126 (232)
...||++...... .....+...+.+.+++.|..+++. ....+.+ .++.+. .++||||+.+..
T Consensus 8 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 8 SNVIAAVVSSVRT--------NFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp CCEEEEECCCCSS--------SHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC
T ss_pred CCEEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 4689999753211 123345566777888899988776 4322221 233333 469999998743
No 163
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=45.57 E-value=69 Score=26.79 Aligned_cols=83 Identities=14% Similarity=0.214 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCChHHH-HHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHH
Q 039121 84 SASYVKFAESGGARVIPLIFNEPEEIL-FEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGF 162 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~e~l-~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~ 162 (232)
...+.+.|++.|..+..+..+.....+ ++.++++|.||+-|-... ........+.++..+++ +..++||=-|.
T Consensus 34 ~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~-~~l~~~~~~al~~~V~~-----GgG~vgiH~a~ 107 (252)
T 1t0b_A 34 HTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAH-DEVKDEVVERVHRRVLE-----GMGLIVLHSGH 107 (252)
T ss_dssp HHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCG-GGSCHHHHHHHHHHHHT-----TCEEEEEGGGG
T ss_pred HHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCC-CcCCHHHHHHHHHHHHc-----CCCEEEEcccC
Confidence 445577889999988876533222111 234789999999431110 11223344556666655 58999985442
Q ss_pred --HHHHHHHcCc
Q 039121 163 --ELLSMIVSED 172 (232)
Q Consensus 163 --QlL~~~~GG~ 172 (232)
+.....+||.
T Consensus 108 ~~~~y~~llGg~ 119 (252)
T 1t0b_A 108 FSKIFKKLMGTT 119 (252)
T ss_dssp GSHHHHHHHCSC
T ss_pred CcHHHHhhhCCc
Confidence 4455566775
No 164
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=45.42 E-value=1e+02 Score=24.73 Aligned_cols=62 Identities=8% Similarity=0.008 Sum_probs=36.6
Q ss_pred CCEEEEeCCCC-CCCCCCcCCccchhhhHHHHHHHHHhC-CCeEEEEeC---CCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPG-DGASGRLSNATNASYISASYVKFAESG-GARVIPLIF---NEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~-~~~~~~~~~~~~~~yi~~s~v~~l~~~-G~~vv~i~~---~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
...||++.... .. .....+...+.+.+++. |..+.+... ..+.+. ++.+. .++||||+.+..
T Consensus 8 ~~~Igvi~~~~~~~--------~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 79 (304)
T 3gbv_A 8 KYTFACLLPKHLEG--------EYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTV 79 (304)
T ss_dssp CEEEEEEEECCCTT--------SHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSS
T ss_pred cceEEEEecCCCCc--------hHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 46799886543 21 13344556777788888 777766542 123222 22222 479999998753
No 165
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=45.34 E-value=52 Score=26.73 Aligned_cols=62 Identities=15% Similarity=-0.101 Sum_probs=39.0
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC--ChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE--PEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~--~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
...||++...... .....+...+.+..++.|..+++..... +.+. ++..+ .++||||+.+..
T Consensus 5 ~~~Igvi~~~~~~--------~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 73 (304)
T 3o1i_D 5 DEKICAIYPHLKD--------SYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVD 73 (304)
T ss_dssp CCEEEEEESCSCS--------HHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred CcEEEEEeCCCCC--------cHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4679988753221 1234455677778888899998887654 4322 22222 379999998744
No 166
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=44.73 E-value=69 Score=26.82 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=28.0
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF 103 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~ 103 (232)
+.++.|.++|... ..+..+...+++.+++.|.++..+..
T Consensus 3 mkiLiI~gSpr~~--------s~t~~la~~~~~~l~~~g~eV~~~dL 41 (273)
T 1d4a_A 3 RRALIVLAHSERT--------SFNYAMKEAAAAALKKKGWEVVESDL 41 (273)
T ss_dssp CEEEEEECCSCTT--------SHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred CEEEEEEeCCCCc--------cHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 3577788887631 13556777888888889998887764
No 167
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=44.23 E-value=81 Score=25.58 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=38.4
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
....||++...... .....+...+.+.+++.|..+.+.....+.+. ++.+. .++||||+.+..
T Consensus 19 ~~~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 19 RTRSIGLVIPDLEN--------TSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp CCCEEEEEESCSCS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCcEEEEEeCCCcC--------cHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34689998753211 12334555667778889998887665444322 22322 369999998753
No 168
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=43.20 E-value=48 Score=27.15 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=28.8
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIF 103 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~ 103 (232)
+.++.|.++|..+ .....+...+++.+++.|.++.++..
T Consensus 2 mkiLiI~gspr~~--------S~t~~l~~~~~~~l~~~g~ev~~~dL 40 (228)
T 3tem_A 2 KKVLIVYAHQEPK--------SFNGSLKNVAVDELSRQGCTVTVSDL 40 (228)
T ss_dssp CEEEEEECCSCTT--------SHHHHHHHHHHHHHHHHTCEEEEEET
T ss_pred CEEEEEEeCCCCC--------CHHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 3477888888642 24566778888889888999988764
No 169
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=42.94 E-value=36 Score=26.53 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=37.8
Q ss_pred chhhhHHHHHHHHHh-CCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHH
Q 039121 79 NASYISASYVKFAES-GGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKI 143 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~-~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~ 143 (232)
.+..++..+.+.+++ .|.++..+...... .. .+..+|+|||.- |..........+.+++..
T Consensus 17 nT~~~a~~i~~~l~~~~g~~v~~~~l~~~~--~~-~l~~aD~ii~gs-P~y~g~~~~~lk~fld~~ 78 (188)
T 2ark_A 17 NTKKMAELVAEGARSLEGTEVRLKHVDEAT--KE-DVLWADGLAVGS-PTNMGLVSWKMKRFFDDV 78 (188)
T ss_dssp HHHHHHHHHHHHHHTSTTEEEEEEETTTCC--HH-HHHHCSEEEEEE-ECBTTBCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEhhhCC--HH-HHHhCCEEEEEe-CccCCcCCHHHHHHHHHH
Confidence 466788888889988 88888877654321 22 256789999852 221222223455666654
No 170
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=42.91 E-value=53 Score=24.14 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=38.3
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHH-HHHHHHhCCCeEEEEeCC-------CChHHHHHhhcCCCEEEECCCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISAS-YVKFAESGGARVIPLIFN-------EPEEILFEKLELVNGILYTGGWA 127 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s-~v~~l~~~G~~vv~i~~~-------~~~e~l~~~l~~~dGlIl~GG~~ 127 (232)
..+++|++.|.. -..+|+++. +.++-++.|..+.+--.. .+.++ ++.+|.||+.+.-.
T Consensus 3 mkivaVtaCptG---------iAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~----I~~AD~VIia~d~~ 68 (106)
T 2m1z_A 3 RKIIAVTACATG---------VAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKD----VNIGEVVIFAVDTK 68 (106)
T ss_dssp CEEEEEEECSSC---------HHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHH----HHHCSEEEEEESSC
T ss_pred ccEEEEEECCCc---------HHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHH----HhhCCEEEEecccc
Confidence 568999999863 357788554 456667789877543321 12333 56899999997543
No 171
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=42.51 E-value=51 Score=28.40 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=50.0
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC--hHHH-HHh-hcCCCEEEECCCCCCCccC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP--EEIL-FEK-LELVNGILYTGGWAKSGLY 132 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~--~e~l-~~~-l~~~dGlIl~GG~~~~~~~ 132 (232)
...++|..+|..+. +.... +...+.+++++.|..+.+...... ..++ .+. .+.+|.||..||.+
T Consensus 24 m~~i~vI~NP~sg~------~~~~~-~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDG----- 91 (337)
T 2qv7_A 24 RKRARIIYNPTSGK------EQFKR-ELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG----- 91 (337)
T ss_dssp CEEEEEEECTTSTT------SCHHH-HHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH-----
T ss_pred cceEEEEECCCCCC------CchHH-HHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCch-----
Confidence 45588888886542 11222 336788899999988776654322 1111 222 23679999999875
Q ss_pred hhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 133 YDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 133 ~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
+..+.++.+++ .+.+.|+.+|=.|
T Consensus 92 --Tv~~v~~~l~~---~~~~~pl~iIP~G 115 (337)
T 2qv7_A 92 --TLNEVVNGIAE---KPNRPKLGVIPMG 115 (337)
T ss_dssp --HHHHHHHHHTT---CSSCCEEEEEECS
T ss_pred --HHHHHHHHHHh---CCCCCcEEEecCC
Confidence 33344444322 1345787665443
No 172
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=42.16 E-value=85 Score=26.24 Aligned_cols=62 Identities=19% Similarity=0.067 Sum_probs=38.1
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
...||++...... .....+...+.+.+++.|..+.+.....+.+. ++.+. .++||||+.+..
T Consensus 58 ~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 58 TKSIGLLATSSEA--------AYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp CSEEEEEESCSCS--------HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCEEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 4689998753211 12233556667778889998887665444332 23322 379999998644
No 173
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=41.24 E-value=18 Score=26.91 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeeh
Q 039121 85 ASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAI 158 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGI 158 (232)
..+.+.+...|....- +.++.+|+||+.-|.... ...-.+..++.+.+ .++||+||
T Consensus 18 ~~L~~~l~~~~f~~~~-----------~~I~~~~~vIvL~G~~t~--~s~wv~~EI~~A~~-----~gkpIigV 73 (111)
T 1eiw_A 18 RVFLERLEQSGLEWRP-----------ATPEDADAVIVLAGLWGT--RRDEILGAVDLARK-----SSKPIITV 73 (111)
T ss_dssp HHHHHHHHHHCSCEEE-----------CCSSSCSEEEEEGGGTTT--SHHHHHHHHHHHTT-----TTCCEEEE
T ss_pred HHHHHHHhCCCCeeec-----------CccccCCEEEEEeCCCcC--CChHHHHHHHHHHH-----cCCCEEEE
Confidence 4555556555665543 237889999987776521 11223344555544 46999998
No 174
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=40.87 E-value=50 Score=25.49 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=30.9
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCCh----------------HHHHHhhcCCCEEEEC
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEPE----------------EILFEKLELVNGILYT 123 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~~----------------e~l~~~l~~~dGlIl~ 123 (232)
.+..++..+.+.+++.|+++..+...... +...+.+..+|+|||.
T Consensus 18 ~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g 78 (200)
T 2a5l_A 18 ATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALG 78 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEE
Confidence 46778888889999899988777654310 0113346789999985
No 175
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=40.13 E-value=83 Score=26.56 Aligned_cols=62 Identities=19% Similarity=0.070 Sum_probs=36.4
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
...||++..... + .....+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+..
T Consensus 66 s~~Igvi~~~~~-------~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 132 (348)
T 3bil_A 66 SNTIGVIVPSLI-------N-HYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNE 132 (348)
T ss_dssp --CEEEEESCSS-------S-HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCG
T ss_pred CCEEEEEeCCCC-------C-cHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 356898874221 1 12333455667778889999887765444332 22222 369999998643
No 176
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=40.04 E-value=1.1e+02 Score=23.43 Aligned_cols=78 Identities=14% Similarity=0.056 Sum_probs=46.6
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhc--CCCEEEECCCCCCCccCh
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLE--LVNGILYTGGWAKSGLYY 133 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~--~~dGlIl~GG~~~~~~~~ 133 (232)
.+|.|-+.+-.++. ..-+..+++ .+++..|++++.+..+.+.+++.+.+. ++|.|.++.-.. .+.
T Consensus 17 ~~~~vlla~~~gd~------HdiG~~~va----~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~---~~~ 83 (161)
T 2yxb_A 17 RRYKVLVAKMGLDG------HDRGAKVVA----RALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNG---AHL 83 (161)
T ss_dssp CSCEEEEEEESSSS------CCHHHHHHH----HHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSS---CHH
T ss_pred CCCEEEEEeCCCCc------cHHHHHHHH----HHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeech---hhH
Confidence 46776666555432 112223332 368999999998876667776654443 689999986433 233
Q ss_pred hHHHHHHHHHHHh
Q 039121 134 DIVEKIFKKILEK 146 (232)
Q Consensus 134 ~~~~~~~~~~l~~ 146 (232)
...+++++...+.
T Consensus 84 ~~~~~~i~~L~~~ 96 (161)
T 2yxb_A 84 HLMKRLMAKLREL 96 (161)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 4555666655443
No 177
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=39.99 E-value=15 Score=31.15 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHH
Q 039121 82 YISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLG 161 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG 161 (232)
-+...+.+++++.|.++. .+.+|.||.-||.+ +.....+..... ..++|+|||=.|
T Consensus 15 ~~~~~l~~~l~~~g~~v~--------------~~~~D~vv~lGGDG-------T~l~aa~~~~~~---~~~~PilGIn~G 70 (272)
T 2i2c_A 15 LLRLNMIAGFGEYDMEYD--------------DVEPEIVISIGGDG-------TFLSAFHQYEER---LDEIAFIGIHTG 70 (272)
T ss_dssp HHHHHHHHHHTTSSCEEC--------------SSSCSEEEEEESHH-------HHHHHHHHTGGG---TTTCEEEEEESS
T ss_pred HHHHHHHHHHHHCCCEeC--------------CCCCCEEEEEcCcH-------HHHHHHHHHhhc---CCCCCEEEEeCC
Confidence 345677888999998651 23689999999876 222222222211 125999999765
No 178
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=39.97 E-value=1.6e+02 Score=24.36 Aligned_cols=61 Identities=13% Similarity=-0.095 Sum_probs=35.5
Q ss_pred CCCEEEEeCCC-CCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEe--CC--CChH----HHHHhh-cCCCEEEECC
Q 039121 56 YRPVIGILSHP-GDGASGRLSNATNASYISASYVKFAESGGARVIPLI--FN--EPEE----ILFEKL-ELVNGILYTG 124 (232)
Q Consensus 56 ~~PvIGI~~~~-~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~--~~--~~~e----~l~~~l-~~~dGlIl~G 124 (232)
....||++... ... .....+...+.+.+++.|..+.+.. .+ .+.+ .++.++ .++||||+++
T Consensus 42 ~~~~Igvi~~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~ 112 (342)
T 1jx6_A 42 RPIKISVVYPGQQVS--------DYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTL 112 (342)
T ss_dssp SCEEEEEEECCCSSC--------CHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CceEEEEEecCCccc--------HHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34689998753 211 1233455667778888998876652 32 2322 223322 3699999954
No 179
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=38.97 E-value=43 Score=26.77 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=51.0
Q ss_pred CCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHH----HHHhC--CCeEEEEeCCC-------------C-h--HHHHH
Q 039121 55 NYRPVIGILSHPGDGASGRLSNATNASYISASYVK----FAESG--GARVIPLIFNE-------------P-E--EILFE 112 (232)
Q Consensus 55 ~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~----~l~~~--G~~vv~i~~~~-------------~-~--e~l~~ 112 (232)
.+|.|++|.+.+..+. ...-+...+++ .+++. |+++..+.... . + ..+.+
T Consensus 10 ~~~~il~i~GS~r~~S--------~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~ 81 (191)
T 3k1y_A 10 HMRTLAVISAGLSTPS--------STRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITS 81 (191)
T ss_dssp CSEEEEEEECCCSSSC--------HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHH
T ss_pred hhceEEEEECCCCCCC--------HHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHH
Confidence 5688999999887532 34445556666 55555 67777665321 1 1 23445
Q ss_pred hhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehh
Q 039121 113 KLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 113 ~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
.+..+|+|||.- |.....+....+.++++.... .=.+||+.-|+
T Consensus 82 ~i~~AD~ivi~s-P~Y~~~~~~~lK~~iD~~~~~--~l~gK~~~~v~ 125 (191)
T 3k1y_A 82 ALSASDGLVVAT-PVFKASYTGLFKMFFDILDTD--ALTGMPTIIAA 125 (191)
T ss_dssp HHHHCSEEEEEE-ECBTTBSCHHHHHHHHHSCTT--TTTTCEEEEEE
T ss_pred HHHHCCEEEEEc-CccCCcCcHHHHHHHHHhhhh--hcCCCEEEEEE
Confidence 567899999851 211112223455555554211 12356766554
No 180
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=38.76 E-value=74 Score=25.60 Aligned_cols=62 Identities=19% Similarity=0.067 Sum_probs=36.9
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
...||++...... ....-+...+.+.+++.|..+.+.....+.+. ++.+. .++||||+.+..
T Consensus 7 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 7 TKSIGLLATSSEA--------AYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp -CEEEEEESCTTS--------HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCEEEEEeCCCCC--------hHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 4679998753211 12233455666777888998887665444332 22322 369999998744
No 181
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=38.27 E-value=21 Score=31.28 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCCEEEECCCCCCCccChhHHHHHHHHHH-HhcCCCCCccEeehhHHHHHHHHHHcC
Q 039121 116 LVNGILYTGGWAKSGLYYDIVEKIFKKIL-EKNDAGDHFPVYAICLGFELLSMIVSE 171 (232)
Q Consensus 116 ~~dGlIl~GG~~~~~~~~~~~~~~~~~~l-~~~~~~~~~PILGIClG~QlL~~~~GG 171 (232)
.+|+|+|+||...-| ..++.++..+ ........-|-..+++|.-+.+..+.|
T Consensus 351 ~i~~VvLvGG~s~~p----~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 351 QIQEIVLVGGSTRIP----KIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp GCCEEEEESGGGGCH----HHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred hCCEEEEECCccccH----HHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 579999999987433 2444455444 222122335778899999988877655
No 182
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=38.04 E-value=47 Score=29.06 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=33.6
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhh-cCCCEEEEC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKL-ELVNGILYT 123 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l-~~~dGlIl~ 123 (232)
....|||+.. ... ....-+...+.+.+++.|..+.+.......+.++.+. .++||||+.
T Consensus 24 ~s~~Igvv~~-~~~--------~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~ 83 (412)
T 4fe7_A 24 KRHRITLLFN-ANK--------AYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIAD 83 (412)
T ss_dssp CCEEEEEECC-TTS--------HHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEE
T ss_pred CCceEEEEeC-Ccc--------hhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEe
Confidence 4468999983 211 1233455667777888899888776443333333333 369999993
No 183
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=38.04 E-value=14 Score=33.40 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=23.1
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC--CCeEEE
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESG--GARVIP 100 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~--G~~vv~ 100 (232)
.|+|..++.+. ........++++|++. |.++.+
T Consensus 43 ~V~II~n~~~~---------~~~~~~~~l~~~L~~~~~gi~V~v 77 (388)
T 3afo_A 43 NVYITKKPWTP---------STREAMVEFITHLHESYPEVNVIV 77 (388)
T ss_dssp EEEEEECTTCH---------HHHHHHHHHHHHHHHHCTTCEEEC
T ss_pred EEEEEEeCCCH---------HHHHHHHHHHHHHHHhCCCeEEEE
Confidence 59999987632 2345567888999887 776653
No 184
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=37.05 E-value=28 Score=27.23 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=39.7
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCC---------------ChHHHHHhhcCCCEEEE
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNE---------------PEEILFEKLELVNGILY 122 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~---------------~~e~l~~~l~~~dGlIl 122 (232)
.++.|...+... ..+..++..+.+.++ .|+++..+.... +.+.+.+.+..+|+|||
T Consensus 8 kilii~gS~r~~--------g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~ 78 (193)
T 1rtt_A 8 KVLGISGSLRSG--------SYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLF 78 (193)
T ss_dssp EEEEEESCCSTT--------CHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEE
T ss_pred eEEEEECCCCCC--------ChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEE
Confidence 366666666421 134445555444444 477777765432 01233445678999998
Q ss_pred CCCCCCCccChhHHHHHHHHHH
Q 039121 123 TGGWAKSGLYYDIVEKIFKKIL 144 (232)
Q Consensus 123 ~GG~~~~~~~~~~~~~~~~~~l 144 (232)
. .|.....+....+.++++..
T Consensus 79 ~-sP~y~~~~p~~lK~~iD~~~ 99 (193)
T 1rtt_A 79 A-TPEYNYSMAGVLKNAIDWAS 99 (193)
T ss_dssp E-CCEETTEECHHHHHHHHHHT
T ss_pred E-ccccccCcCHHHHHHHHHhc
Confidence 5 22211112234566666653
No 185
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=35.98 E-value=2e+02 Score=24.33 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=39.2
Q ss_pred CCCCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCC
Q 039121 54 LNYRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWA 127 (232)
Q Consensus 54 ~~~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~ 127 (232)
+..+|+|==.|+.-. .....+.+-..|+.|++. ...+++.++++.+|+|++=-|-.
T Consensus 14 ~~~~Plvh~iTN~V~---------------~n~~AN~~La~GasP~M~---~~~~e~~e~~~~a~alvIn~G~l 69 (273)
T 3dzv_A 14 LTTAPLIQCITNEIT---------------CESMANALLYIDAKPIMA---DDPREFPQMFQQTSALVLNLGHL 69 (273)
T ss_dssp CCSCCEEEEECCTTT---------------HHHHHHHHHHTTCEEECC---CCGGGHHHHHTTCSEEEEECCSC
T ss_pred CCCCCEEEEecCcch---------------hhhHHHHHHHcCCchhhc---CCHHHHHHHHHHCCeEEEecCCC
Confidence 355788776665431 122345788899999984 35678888888999999976664
No 186
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=35.47 E-value=68 Score=25.09 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=27.5
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCC--CeEEEEeCC
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGG--ARVIPLIFN 104 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G--~~vv~i~~~ 104 (232)
.++.|.+.+.... ...+..+...+++.+++.| .++..+...
T Consensus 3 kilii~gS~r~~~------~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 3 KLLVVKAHPLTKE------ESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp EEEEEECCSSCTT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred eEEEEEecCCCCC------CCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 4677777776311 1245667788888898877 888777644
No 187
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=34.45 E-value=86 Score=26.27 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=37.4
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG 125 (232)
....||++...... .....+...+.+.+++.|..+++..... .+. ++.+. .++||||+.+.
T Consensus 63 ~~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 63 RSALVGVIVPDLSN--------EYYSESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp -CCEEEEEESCSSS--------HHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCEEEEEeCCCcC--------hHHHHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 34679998753211 1233455667777888899988876554 332 12211 37999999875
No 188
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=33.99 E-value=88 Score=22.59 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=30.6
Q ss_pred cchhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEEC
Q 039121 78 TNASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYT 123 (232)
Q Consensus 78 ~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~ 123 (232)
.++..++..+.+.+++.|..+.++...... .. .+...|.|||-
T Consensus 10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~--~~-~l~~~d~iiig 52 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGKDVNTINVSDVN--ID-ELLNEDILILG 52 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEEGGGCC--HH-HHTTCSEEEEE
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEEhhhCC--HH-HHhhCCEEEEE
Confidence 357788888999999999888777653321 12 25678988884
No 189
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=33.07 E-value=98 Score=22.64 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=29.9
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCC-hHHHHHhhc-CCCEEEECC
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEP-EEILFEKLE-LVNGILYTG 124 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~-~e~l~~~l~-~~dGlIl~G 124 (232)
.+..++..+.+.+++.|..+.++..... .+ .+. ..|.|||--
T Consensus 14 nT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~----~l~~~~d~ii~g~ 57 (148)
T 3f6r_A 14 NTESIAQKLEELIAAGGHEVTLLNAADASAE----NLADGYDAVLFGC 57 (148)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEETTTBCCT----TTTTTCSEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCeEEEEehhhCCHh----HhcccCCEEEEEe
Confidence 4667888888899999998888775431 22 255 789887753
No 190
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=32.25 E-value=35 Score=27.69 Aligned_cols=63 Identities=8% Similarity=-0.079 Sum_probs=35.3
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChH---H-HHHhh-cCCCEEEECCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEE---I-LFEKL-ELVNGILYTGG 125 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e---~-l~~~l-~~~dGlIl~GG 125 (232)
....|||+..... .+ .....+...+.+.+++.|..+++.....+.+ + ++.+. .++||||+.+.
T Consensus 10 ~~~~Igvi~~~~~------~~-~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 10 SKPTIALYWSSDI------SV-NIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp -CCEEEEEEETTS------CG-GGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSC
T ss_pred CCceEEEEecccc------ch-HHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecC
Confidence 4578999875211 01 1233455667778888898876654322211 1 12222 36999999864
No 191
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=31.83 E-value=21 Score=21.92 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCCCCccEeehhHHHHHHHHH
Q 039121 136 VEKIFKKILEKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 136 ~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.|.+.+..-.+...+-.--.-|-|.|.|+|..+
T Consensus 13 yrqiakesckkgflgvrdgtagacfgaqimvaa 45 (48)
T 1ehs_A 13 YRQIAKESCKKGFLGVRDGTAGACFGAQIMVAA 45 (48)
T ss_dssp HHHHHHHHHHSCSSSSSSSSCCTTTTTHHHHTT
T ss_pred HHHHHHHHHhcccceeccCccccccchhHhhhc
Confidence 444444444555555555667899999999754
No 192
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=31.82 E-value=82 Score=27.05 Aligned_cols=83 Identities=11% Similarity=0.048 Sum_probs=48.4
Q ss_pred CEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh--HHH-HHh-hcCCCEEEECCCCCCCccCh
Q 039121 58 PVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE--EIL-FEK-LELVNGILYTGGWAKSGLYY 133 (232)
Q Consensus 58 PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~--e~l-~~~-l~~~dGlIl~GG~~~~~~~~ 133 (232)
..++|..+|..+. .. ....+.+++++.|..+.+....... .++ .+. .+.+|.||..||.+
T Consensus 30 ~~~~vi~Np~sg~--------~~--~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDG------ 93 (332)
T 2bon_A 30 PASLLILNGKSTD--------NL--PLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDG------ 93 (332)
T ss_dssp CCEEEEECSSSTT--------CH--HHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHH------
T ss_pred ceEEEEECCCCCC--------Cc--hHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccch------
Confidence 3478888886532 11 2356788999999988766533221 111 121 24689999999875
Q ss_pred hHHHHHHHHHHHhcCCCCCccEeeh
Q 039121 134 DIVEKIFKKILEKNDAGDHFPVYAI 158 (232)
Q Consensus 134 ~~~~~~~~~~l~~~~~~~~~PILGI 158 (232)
+..+.++.+.... .+.+.|+..|
T Consensus 94 -Tl~~v~~~l~~~~-~~~~~plgii 116 (332)
T 2bon_A 94 -TINEVSTALIQCE-GDDIPALGIL 116 (332)
T ss_dssp -HHHHHHHHHHHCC-SSCCCEEEEE
T ss_pred -HHHHHHHHHhhcc-cCCCCeEEEe
Confidence 3444555544321 1346786666
No 193
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=31.60 E-value=99 Score=24.30 Aligned_cols=76 Identities=11% Similarity=0.049 Sum_probs=42.1
Q ss_pred EEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCC----------------------hHHHHHhhcC
Q 039121 59 VIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEP----------------------EEILFEKLEL 116 (232)
Q Consensus 59 vIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~----------------------~e~l~~~l~~ 116 (232)
++.|.+.|..+ .....+...+++.+ +.|.++..+..... .+.+.+.+..
T Consensus 3 iLiI~gspr~~--------s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (196)
T 3lcm_A 3 ILIVYTHPNPT--------SFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTW 73 (196)
T ss_dssp EEEEECCSCTT--------SHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHH
T ss_pred EEEEEeCCCCC--------ChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHh
Confidence 56777777532 13445666666666 67888887764321 1234455678
Q ss_pred CCEEEECCCCCCCccChhHHHHHHHHHH
Q 039121 117 VNGILYTGGWAKSGLYYDIVEKIFKKIL 144 (232)
Q Consensus 117 ~dGlIl~GG~~~~~~~~~~~~~~~~~~l 144 (232)
+|+|||. -|.-...+....+.+++++.
T Consensus 74 AD~iV~~-~P~y~~~~pa~LK~~iD~v~ 100 (196)
T 3lcm_A 74 ADHLIFI-FPIWWSGMPAILKGFIDRVF 100 (196)
T ss_dssp CSEEEEE-EECBTTBCCHHHHHHHHHHS
T ss_pred CCEEEEE-CchhhccccHHHHHHHHHHc
Confidence 9999986 11111111234566666654
No 194
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=31.59 E-value=92 Score=25.88 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=36.8
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
...||++...... .....+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+..
T Consensus 60 ~~~Ig~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 60 TTTVGVIIPDISN--------IFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp CCEEEEEEC--CC--------SHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred CCEEEEEeCCCCC--------cHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4689998753211 12334455667778888998887764433221 22322 369999998743
No 195
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=31.24 E-value=90 Score=26.07 Aligned_cols=38 Identities=21% Similarity=0.115 Sum_probs=27.1
Q ss_pred HHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCC
Q 039121 87 YVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWA 127 (232)
Q Consensus 87 ~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~ 127 (232)
..+.+-..|+.|++.. ..+++.+.++.+|.|++-.|-.
T Consensus 30 ~an~~la~gasp~M~~---~~~e~~~~~~~~dalvi~~G~~ 67 (265)
T 1v8a_A 30 TANALLALGASPVMAH---AEEELEEMIRLADAVVINIGTL 67 (265)
T ss_dssp HHHHHHHHTCEEEECC---CTTTHHHHHHHCSEEEEECTTC
T ss_pred hHHHHHhcCCCccccC---CHHHHHHHHHHCCEEEEEECCC
Confidence 3456778899999853 3455666778899999954544
No 196
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=30.94 E-value=1.2e+02 Score=24.73 Aligned_cols=59 Identities=10% Similarity=-0.051 Sum_probs=34.0
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCC---eEEEE--eCCCChHHH----HHhh-cCCCEEEECC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGA---RVIPL--IFNEPEEIL----FEKL-ELVNGILYTG 124 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~---~vv~i--~~~~~~e~l----~~~l-~~~dGlIl~G 124 (232)
...|||+ ....+ ...+-+.+.+.+.+++.|. .+.++ ....+.+.. +.+. +++||||+.|
T Consensus 2 ~~~Igvi-~~~~~--------p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~ 70 (295)
T 3lft_A 2 NAKIGVL-QFVSH--------PSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIA 70 (295)
T ss_dssp CEEEEEE-ECSCC--------HHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEES
T ss_pred ceEEEEE-EccCC--------hhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 4679998 22111 1234456677788889999 75443 323333322 2222 3699999986
No 197
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=30.61 E-value=2.5e+02 Score=24.28 Aligned_cols=65 Identities=8% Similarity=0.011 Sum_probs=40.8
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHH
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKIL 144 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l 144 (232)
++..++..+.+.+++.|+++..+.... +..++.+.+..+|+|||.---. ........+.++++..
T Consensus 269 nT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y-~~~~~~~~k~fld~l~ 334 (414)
T 2q9u_A 269 TTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTL-NNTMMPSVAAALNYVR 334 (414)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCB-TTBCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCcc-CcCchHHHHHHHHHHH
Confidence 567788888888988898887776532 2333444577899999864221 1122234556666543
No 198
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=30.53 E-value=83 Score=25.36 Aligned_cols=61 Identities=10% Similarity=0.003 Sum_probs=37.4
Q ss_pred CCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCChHH----HHHhh-cCCCEEEECCCC
Q 039121 57 RPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPEEI----LFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 57 ~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~----l~~~l-~~~dGlIl~GG~ 126 (232)
...||++... .. ....-+...+.+.+++.|..+++.....+.+. ++.+. .++||||+.+..
T Consensus 8 ~~~Igvi~~~-~~--------~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 8 SNIIAFIVPD-QN--------PFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEEESS-CC--------HHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCEEEEEECC-CC--------chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 3579998754 21 12233455666777888998887765444322 22222 369999998754
No 199
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=30.23 E-value=87 Score=25.01 Aligned_cols=42 Identities=7% Similarity=0.089 Sum_probs=27.9
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhC--CCeEEEEeC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESG--GARVIPLIF 103 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~--G~~vv~i~~ 103 (232)
|+.++.|.+.|..+. .....-+...+++.+++. |+++..+..
T Consensus 4 M~kiLiI~gSpr~~~------~S~s~~l~~~~~~~~~~~~~g~ev~~~dL 47 (211)
T 3p0r_A 4 MTKVLFVKANNRPAE------QAVSVKLYEAFLASYKEAHPNDTVVELDL 47 (211)
T ss_dssp CCEEEEEECCCSCTT------TCHHHHHHHHHHHHHHHHCTTSEEEEEEG
T ss_pred cCEEEEEEeCCCCCC------CCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 456888888886211 123456777888888876 888877643
No 200
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=29.49 E-value=1.2e+02 Score=21.62 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=30.7
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECC
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTG 124 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~G 124 (232)
++..++..+.+.+++.|.++..+...... .. .+...|+|||-.
T Consensus 12 nT~~~a~~i~~~l~~~g~~v~~~~~~~~~--~~-~l~~~d~vi~g~ 54 (137)
T 2fz5_A 12 NTEAMANEIEAAVKAAGADVESVRFEDTN--VD-DVASKDVILLGC 54 (137)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEETTSCC--HH-HHHTCSEEEEEC
T ss_pred hHHHHHHHHHHHHHhCCCeEEEEEcccCC--HH-HHhcCCEEEEEc
Confidence 56778888888999889988887754321 11 256789988853
No 201
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=29.36 E-value=1.3e+02 Score=24.64 Aligned_cols=61 Identities=5% Similarity=-0.091 Sum_probs=34.4
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCC----eE--EEEeCCCChHHH----HHhh-cCCCEEEECC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGA----RV--IPLIFNEPEEIL----FEKL-ELVNGILYTG 124 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~----~v--v~i~~~~~~e~l----~~~l-~~~dGlIl~G 124 (232)
....|||... .. + ....-+.+.+.+.+++.|. .+ +......+.+.. +.+. .++||||+.|
T Consensus 7 ~t~~IGvi~~-~~-------~-p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~ 77 (302)
T 2qh8_A 7 KTAKVAVSQI-VE-------H-PALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp CCEEEEEEES-SC-------C-HHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEES
T ss_pred CCcEEEEEEe-cc-------C-hhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 3568999832 11 1 1234455677788888998 44 333333333322 2222 3699999986
Q ss_pred C
Q 039121 125 G 125 (232)
Q Consensus 125 G 125 (232)
.
T Consensus 78 ~ 78 (302)
T 2qh8_A 78 T 78 (302)
T ss_dssp H
T ss_pred h
Confidence 3
No 202
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=28.63 E-value=67 Score=26.83 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCeEEEEeCCC----ChHHHHHhh---cCCCEEEECCCCC
Q 039121 86 SYVKFAESGGARVIPLIFNE----PEEILFEKL---ELVNGILYTGGWA 127 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~----~~e~l~~~l---~~~dGlIl~GG~~ 127 (232)
.+.+.|++.|++++.+|.-. +.+.+.+.+ +.+|.|||+-..+
T Consensus 39 ~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~na 87 (286)
T 1jr2_A 39 PYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRA 87 (286)
T ss_dssp HHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHH
T ss_pred HHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHH
Confidence 56667999999988776321 223333333 6789999996544
No 203
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=28.48 E-value=62 Score=26.37 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=38.1
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHHHHHHhCCCeEEEEeCCCCh---HHHHHhh-cCCCEEEECCCC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYVKFAESGGARVIPLIFNEPE---EILFEKL-ELVNGILYTGGW 126 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v~~l~~~G~~vv~i~~~~~~---e~l~~~l-~~~dGlIl~GG~ 126 (232)
....||++. .... .....+...+.+.+++.|..+++.....+. +.++.++ .++||||+.+..
T Consensus 11 ~~~~Igvi~-~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 11 SSRLLGVVF-ELQQ--------PFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp --CEEEEEE-ETTC--------HHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCC
T ss_pred CCCEEEEEE-ecCC--------chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCC
Confidence 346899998 3221 123345567778888899998877654332 2223333 368999998754
No 204
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=28.02 E-value=1.7e+02 Score=23.67 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=49.7
Q ss_pred CCCEEEEeCCCCCCCCCCcCCccchhhhHHHHH-HHHHhCCCeEEEEeCCCChHHHHHhh--cCCCEEEECCCCCCCccC
Q 039121 56 YRPVIGILSHPGDGASGRLSNATNASYISASYV-KFAESGGARVIPLIFNEPEEILFEKL--ELVNGILYTGGWAKSGLY 132 (232)
Q Consensus 56 ~~PvIGI~~~~~~~~~~~~~~~~~~~yi~~s~v-~~l~~~G~~vv~i~~~~~~e~l~~~l--~~~dGlIl~GG~~~~~~~ 132 (232)
.++.|-+.+-+++. +-|-..++ ..++..|++++-+-.+.+.+++.+.+ .++|.|.+||.....+ .
T Consensus 91 ~~~~vll~~v~gd~-----------HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~-~ 158 (215)
T 3ezx_A 91 EAGLAITFVAEGDI-----------HDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTT-S 158 (215)
T ss_dssp -CCEEEEEECTTCC-----------CCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHH-H
T ss_pred CCCeEEEEeCCCCh-----------hHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccC-c
Confidence 45666666655542 12333443 36889999999887777777764333 2689999965444222 2
Q ss_pred hhHHHHHHHHHHHhcCCCCCccEe
Q 039121 133 YDIVEKIFKKILEKNDAGDHFPVY 156 (232)
Q Consensus 133 ~~~~~~~~~~~l~~~~~~~~~PIL 156 (232)
....++.++...+.+ ..+++||+
T Consensus 159 ~~~~~~~i~~l~~~~-~~~~v~v~ 181 (215)
T 3ezx_A 159 MLGQKDLMDRLNEEK-LRDSVKCM 181 (215)
T ss_dssp HTHHHHHHHHHHHTT-CGGGSEEE
T ss_pred HHHHHHHHHHHHHcC-CCCCCEEE
Confidence 234555555554432 11245654
No 205
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=27.74 E-value=1.9e+02 Score=21.45 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=33.6
Q ss_pred HHHHhCCCeEEEEeCCCChHHHHHhh--cCCCEEEECCCCCCCccChhHHHHHHHHHHH
Q 039121 89 KFAESGGARVIPLIFNEPEEILFEKL--ELVNGILYTGGWAKSGLYYDIVEKIFKKILE 145 (232)
Q Consensus 89 ~~l~~~G~~vv~i~~~~~~e~l~~~l--~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~ 145 (232)
.+++..|++++-+-.+.+.+++.+.. .++|.|.+|.-.. .+....+++++...+
T Consensus 25 ~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~---~~~~~~~~~i~~l~~ 80 (137)
T 1ccw_A 25 HAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYG---QGEIDCKGLRQKCDE 80 (137)
T ss_dssp HHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSS---THHHHHTTHHHHHHH
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCc---CcHHHHHHHHHHHHh
Confidence 46899999998765555666664433 3689999987543 122234444554443
No 206
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=27.33 E-value=1.3e+02 Score=22.98 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=31.0
Q ss_pred chhhhHHHHHHHHHh-CCCeEEEEeCCCC-hHHH---------------HHhhcCCCEEEEC
Q 039121 79 NASYISASYVKFAES-GGARVIPLIFNEP-EEIL---------------FEKLELVNGILYT 123 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~-~G~~vv~i~~~~~-~e~l---------------~~~l~~~dGlIl~ 123 (232)
.+..++..+.+.+++ .|+++..+..... ...+ .+.+..+|+|||.
T Consensus 14 ~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g 75 (198)
T 3b6i_A 14 HIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFG 75 (198)
T ss_dssp HHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEE
Confidence 466788888899998 8998887765431 0000 2346789999984
No 207
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=27.29 E-value=1.9e+02 Score=24.09 Aligned_cols=38 Identities=11% Similarity=-0.073 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCeEEEE-eCCCChHHHHHhhcCCCEEEE
Q 039121 85 ASYVKFAESGGARVIPL-IFNEPEEILFEKLELVNGILY 122 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i-~~~~~~e~l~~~l~~~dGlIl 122 (232)
...++.+++.|.++-+. ....+.+.++++++.+|-|++
T Consensus 124 ~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~Vlv 162 (246)
T 3inp_A 124 DRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLI 162 (246)
T ss_dssp HHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEE
T ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEE
Confidence 46778889999877443 334455677777888998877
No 208
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=26.81 E-value=2.2e+02 Score=23.58 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHhCCCeEEEEeCCC-------------ChHHHHHhhcCCCEEEECCCCC
Q 039121 82 YISASYVKFAESGGARVIPLIFNE-------------PEEILFEKLELVNGILYTGGWA 127 (232)
Q Consensus 82 yi~~s~v~~l~~~G~~vv~i~~~~-------------~~e~l~~~l~~~dGlIl~GG~~ 127 (232)
+|-..+++.|.+.|.+|+.+.-.. +.+.+.+.++.+|.||-..|..
T Consensus 30 ~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~ 88 (347)
T 4id9_A 30 RVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM 88 (347)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence 677888889999999887764321 3456677788999999988765
No 209
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.52 E-value=2.6e+02 Score=22.75 Aligned_cols=67 Identities=10% Similarity=-0.003 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCh---HHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehh
Q 039121 84 SASYVKFAESGGARVIPLIFNEPE---EILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 84 ~~s~v~~l~~~G~~vv~i~~~~~~---e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
...|.+++++.|..+......... +.+.++++.+|+|+.+.... ..+..+.+.+..+. .++||.|.=
T Consensus 158 ~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~~~dai~~~~D~~----a~g~~~~l~~~~~~-----~~i~vig~d 227 (302)
T 2qh8_A 158 MELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNT----VASAIEGMIVAANQ-----AKTPVFGAA 227 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHGGGCSEEEECSCHH----HHTTHHHHHHHHHH-----TTCCEEESS
T ss_pred HHHHHHHHHHcCCEEEEEecCChHHHHHHHHHHhccCCEEEECCcHh----HHHHHHHHHHHHHH-----cCCCEEECC
Confidence 356788899999887665543221 22344556789999863221 11222333333333 369999963
No 210
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=26.19 E-value=48 Score=30.36 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=35.5
Q ss_pred CCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHHHHHcCc
Q 039121 116 LVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSED 172 (232)
Q Consensus 116 ~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~~~~GG~ 172 (232)
.+|+|+|.||...-| ..++.++..+...-....-|-..+++|.-+.+..+.|.
T Consensus 302 ~i~~VvLvGG~s~~p----~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~~ 354 (509)
T 2v7y_A 302 DIDKVILVGGSTRIP----AVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGE 354 (509)
T ss_dssp GCSEEEEESGGGGCH----HHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHTC
T ss_pred HCcEEEEECCcccCh----HHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHHhcCC
Confidence 579999999987433 23444444443222233457889999999999877664
No 211
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=26.00 E-value=46 Score=28.72 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=30.8
Q ss_pred CCCEEEECCCCCCCccChhHHHHHHHHHH-HhcCCCCCccEeehhHHHHHHHHH
Q 039121 116 LVNGILYTGGWAKSGLYYDIVEKIFKKIL-EKNDAGDHFPVYAICLGFELLSMI 168 (232)
Q Consensus 116 ~~dGlIl~GG~~~~~~~~~~~~~~~~~~l-~~~~~~~~~PILGIClG~QlL~~~ 168 (232)
.+|+|+|+||...-| ..++.++..+ ........-|-..+++|.-+.+..
T Consensus 343 ~i~~VvLvGG~s~~p----~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 392 (394)
T 3qfu_A 343 DVDDIVLVGGSTRIP----KVQQLLESYFDGKKASKGINPDEAVAYGAAVQAGV 392 (394)
T ss_dssp GCCEEEEESGGGGSH----HHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHH
T ss_pred HCCEEEEECCccccH----HHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 569999999987433 3444555554 222122234778899998887654
No 212
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=25.15 E-value=39 Score=29.22 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=29.5
Q ss_pred CCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehhHHHHHHH
Q 039121 116 LVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLS 166 (232)
Q Consensus 116 ~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIClG~QlL~ 166 (232)
.+|+|+|+||...-| ..++.++..+........-|-..+++|.-+.+
T Consensus 333 ~i~~IvL~GG~s~~p----~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a 379 (383)
T 1dkg_D 333 DIDDVILVGGQTRMP----MVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQG 379 (383)
T ss_dssp TCCEEEEESGGGGSH----HHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHT
T ss_pred hCCEEEEecCccccH----HHHHHHHHHhCCCCCCCcChHHHHHHHHHHHH
Confidence 469999999987333 24444554443222233457788888887664
No 213
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=24.57 E-value=3.3e+02 Score=23.20 Aligned_cols=65 Identities=6% Similarity=0.034 Sum_probs=39.9
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHH
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKIL 144 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l 144 (232)
.+..++..+.+.+++.|..+..+.... +.+++.+.+..+|+|||.-.... .......+..++...
T Consensus 265 nt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~~-~~~~~~~~~~l~~l~ 330 (402)
T 1e5d_A 265 STEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHN-NGILPYVAGTLQYIK 330 (402)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBT-TBCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccC-CCchHHHHHHHHHhh
Confidence 466777778888888888887776543 34455455678999999643221 111124555555543
No 214
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=24.24 E-value=44 Score=30.24 Aligned_cols=44 Identities=20% Similarity=0.114 Sum_probs=25.0
Q ss_pred HHHhhcCCCEEEECC-CCCCCccChhH-HHHHHHHHHHhcCCCCCccEeehh
Q 039121 110 LFEKLELVNGILYTG-GWAKSGLYYDI-VEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 110 l~~~l~~~dGlIl~G-G~~~~~~~~~~-~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
+++.++.+| +|||| |........+. -..+.+.+.+. ++|+..||
T Consensus 281 l~~~l~~AD-LVITGEG~~D~Qtl~GK~p~gVa~~A~~~-----~vPviaia 326 (383)
T 3cwc_A 281 LEACLADAD-LVITGEGRIDSQTIHGKVPIGVANIAKRY-----NKPVIGIA 326 (383)
T ss_dssp HHHHHHHCS-EEEECCEESCC----CHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred hHhhhcCCC-EEEECCCCCcCcCCCCcHHHHHHHHHHHh-----CCCEEEEe
Confidence 456677788 67777 65422222222 23445555544 59999998
No 215
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=23.80 E-value=1.5e+02 Score=25.13 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHhCCC-eEEEEeCCCChHHHHHhhcCCCEEEECCCCC
Q 039121 82 YISASYVKFAESGGA-RVIPLIFNEPEEILFEKLELVNGILYTGGWA 127 (232)
Q Consensus 82 yi~~s~v~~l~~~G~-~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~ 127 (232)
+|-..+++.|.+.|. +++.+..+.+.+.+.+.++.+|.||-..|..
T Consensus 11 ~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~~~d~Vih~a~~~ 57 (369)
T 3st7_A 11 FVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLAGVN 57 (369)
T ss_dssp HHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHCSEEEECCCSB
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhccCCEEEECCcCC
Confidence 677788888888888 7777654346778888888999999887653
No 216
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=23.79 E-value=1.1e+02 Score=26.00 Aligned_cols=60 Identities=18% Similarity=0.075 Sum_probs=37.0
Q ss_pred HHHHHhCCCeEEEEeCCCChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEe
Q 039121 88 VKFAESGGARVIPLIFNEPEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVY 156 (232)
Q Consensus 88 v~~l~~~G~~vv~i~~~~~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PIL 156 (232)
.+.+-..|+.|++.. .+++..++...+|++++--|-- ++.+........+.+.+. ++|+.
T Consensus 31 AN~lLA~GasPiMa~---~~~E~~e~~~~a~al~iNiGtl-~~~~~~~m~~A~~~A~~~-----~~PvV 90 (265)
T 3hpd_A 31 ANALLALGASPVMAH---AEEELEEMIRLADAVVINIGTL-DSGWRRSMVKATEIANEL-----GKPIV 90 (265)
T ss_dssp HHHHHHHTCEEEECC---CTTTHHHHHHHCSEEEEECTTC-CHHHHHHHHHHHHHHHHH-----TCCEE
T ss_pred HHHHHHhCCchhhcC---CHHHHHHHHHHCCeEEEECCCC-ChHHHHHHHHHHHHHHHc-----CCCEE
Confidence 356778899998853 4556777777899999977764 233333333333444433 36654
No 217
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=23.25 E-value=75 Score=24.51 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=30.6
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCCC------------------hHHHHHhhcCCCEEEEC
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNEP------------------EEILFEKLELVNGILYT 123 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~~------------------~e~l~~~l~~~dGlIl~ 123 (232)
.+..++..+.+.+++.|+++..+..... .++ .+.+..+|+|||.
T Consensus 16 ~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~g 77 (199)
T 2zki_A 16 SIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIG 77 (199)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEE
Confidence 4667888888889888998887765432 111 2346679999984
No 218
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=22.08 E-value=63 Score=26.06 Aligned_cols=77 Identities=8% Similarity=-0.033 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCC-----ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEeehh
Q 039121 85 ASYVKFAESGGARVIPLIFNE-----PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVYAIC 159 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~~-----~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PILGIC 159 (232)
..+.+.|++.|++++.+|.-. +.+.....++.+|.|||+-..+ .+.+++.. .. +. .+.+++.|-
T Consensus 14 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~a--------V~~~~~~l-~~-~l-~~~~~~aVG 82 (240)
T 3mw8_A 14 AAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSA--------VSFATPWL-KD-QW-PKATYYAVG 82 (240)
T ss_dssp HHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHH--------HHHHHHHH-TT-CC-CSSEEEESS
T ss_pred HHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHH--------HHHHHHHH-Hh-hC-cCCeEEEEC
Confidence 356678999999887665322 1122223357899999994433 22223322 11 12 247887777
Q ss_pred HHHHHHHHHHcCc
Q 039121 160 LGFELLSMIVSED 172 (232)
Q Consensus 160 lG~QlL~~~~GG~ 172 (232)
-+---.....|-+
T Consensus 83 ~~Ta~~L~~~G~~ 95 (240)
T 3mw8_A 83 DATADALALQGIT 95 (240)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 6654444445654
No 219
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=21.33 E-value=1.8e+02 Score=24.98 Aligned_cols=80 Identities=10% Similarity=-0.030 Sum_probs=46.0
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECCCCCCCccChhHHHHHHHHHHHhcC-CCCCccEe
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTGGWAKSGLYYDIVEKIFKKILEKND-AGDHFPVY 156 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~-~~~~~PIL 156 (232)
.+..++..+.+.+++.|+++..+.... +.+.+.+.+..+|+|||.--.. ........+.++++...... .=.++|+.
T Consensus 269 nT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y-~~~~~~~~k~~ld~l~~~~~~~l~~k~~~ 347 (404)
T 2ohh_A 269 STRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTI-YDEPYPSVGDLLMYLRGLKFNRTLTRKAL 347 (404)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEE-TTEECTHHHHHHHHHHHHCGGGTCCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccc-cccchHHHHHHHHHhhhccccccCCCEEE
Confidence 567788888888988898888776543 3344445577899999863211 11111245555655432110 00346665
Q ss_pred ehh
Q 039121 157 AIC 159 (232)
Q Consensus 157 GIC 159 (232)
-+|
T Consensus 348 ~~~ 350 (404)
T 2ohh_A 348 VFG 350 (404)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 220
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=21.28 E-value=2.8e+02 Score=23.38 Aligned_cols=39 Identities=13% Similarity=-0.023 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCeEEEEeCCCChHHHHHhhc-----CCCEEEECCC
Q 039121 86 SYVKFAESGGARVIPLIFNEPEEILFEKLE-----LVNGILYTGG 125 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~~~~e~l~~~l~-----~~dGlIl~GG 125 (232)
++...++..|++++.++.+ +.+++++.++ +...|+++.-
T Consensus 144 ~~~~~~~~~g~~~~~v~~~-d~~~le~~l~~~~~~~~~~v~~~~~ 187 (401)
T 2bwn_A 144 SMIEGIKRNAGPKRIFRHN-DVAHLRELIAADDPAAPKLIAFESV 187 (401)
T ss_dssp HHHHHHHHSCCCEEEECTT-CHHHHHHHHHHSCTTSCEEEEEESB
T ss_pred HHHHHHHHcCCeEEEEcCC-CHHHHHHHHHhhccCCceEEEEecC
Confidence 4455677889999998875 5667776664 4556777653
No 221
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=21.27 E-value=3e+02 Score=21.57 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=40.3
Q ss_pred HHHHhCCCeEEEEeCCCChHHHHHhhc--CCCEEEECCCCCCCccChhHHHHHHHHHHHhcCCCCCccEe
Q 039121 89 KFAESGGARVIPLIFNEPEEILFEKLE--LVNGILYTGGWAKSGLYYDIVEKIFKKILEKNDAGDHFPVY 156 (232)
Q Consensus 89 ~~l~~~G~~vv~i~~~~~~e~l~~~l~--~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~~~~~~~~PIL 156 (232)
..++..|.+++.+-.+.+.+++.+.+. ++|.|.++.-.. ......++.++...+.+ ...+.||+
T Consensus 110 ~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~---~~~~~~~~~i~~l~~~~-~~~~~~v~ 175 (210)
T 1y80_A 110 MMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLT---TTMMNMKSTIDALIAAG-LRDRVKVI 175 (210)
T ss_dssp HHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSG---GGTHHHHHHHHHHHHTT-CGGGCEEE
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccc---ccHHHHHHHHHHHHhcC-CCCCCeEE
Confidence 357889999998877767777655443 789999997543 12345566666554431 11236654
No 222
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=20.96 E-value=1.6e+02 Score=24.38 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCeEEEEeCC----CChHHHHHhhcCCCEEEECCCCC--CC--c-cCh-----hHHHHHHHHHHHhcCCC
Q 039121 85 ASYVKFAESGGARVIPLIFN----EPEEILFEKLELVNGILYTGGWA--KS--G-LYY-----DIVEKIFKKILEKNDAG 150 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~i~~~----~~~e~l~~~l~~~dGlIl~GG~~--~~--~-~~~-----~~~~~~~~~~l~~~~~~ 150 (232)
..+.++|+..|..+..++.. .-+... +.++.+|.||+.+.+. .. + .|. ....+.++..+..
T Consensus 43 ~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~-~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~---- 117 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMPAHTVQIAFPESI-DELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKN---- 117 (256)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHCCCCSH-HHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHT----
T ss_pred HHHHHHHHhcCceEEEEecccchhhCCcCh-hHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHh----
Confidence 34566899899988887422 111111 2367899999998443 11 0 000 1233455555554
Q ss_pred CCccEeeh
Q 039121 151 DHFPVYAI 158 (232)
Q Consensus 151 ~~~PILGI 158 (232)
+..+++|
T Consensus 118 -GGgll~i 124 (256)
T 2gk3_A 118 -GGGLLMI 124 (256)
T ss_dssp -TCEEEEE
T ss_pred -CCEEEEE
Confidence 5888888
No 223
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=20.94 E-value=2.6e+02 Score=23.85 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=32.2
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEeCCC-ChHHHHHhhcCCCEEEECC
Q 039121 79 NASYISASYVKFAESGGARVIPLIFNE-PEEILFEKLELVNGILYTG 124 (232)
Q Consensus 79 ~~~yi~~s~v~~l~~~G~~vv~i~~~~-~~e~l~~~l~~~dGlIl~G 124 (232)
++..++..+.+.+++.|..+..+.... +..++.+.+..+|+|||.-
T Consensus 264 nT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~ 310 (398)
T 1ycg_A 264 STEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGS 310 (398)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEEC
Confidence 466778888888888898877766432 2344444567899999863
No 224
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=20.44 E-value=3.1e+02 Score=22.26 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCeEEE-EeCCCChHHHHHhhcCCCEEEE
Q 039121 85 ASYVKFAESGGARVIP-LIFNEPEEILFEKLELVNGILY 122 (232)
Q Consensus 85 ~s~v~~l~~~G~~vv~-i~~~~~~e~l~~~l~~~dGlIl 122 (232)
...++.+++.|.++.+ +....+.+.++++++.+|.|++
T Consensus 102 ~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~ 140 (228)
T 3ovp_A 102 GALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALV 140 (228)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEE
Confidence 4677888999987744 3344556677777788998876
No 225
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=20.41 E-value=3.1e+02 Score=22.75 Aligned_cols=37 Identities=14% Similarity=-0.003 Sum_probs=23.1
Q ss_pred ChHHHHHhhc--CCCEEEECCCCCCCccChhHHHHHHHHHHHh
Q 039121 106 PEEILFEKLE--LVNGILYTGGWAKSGLYYDIVEKIFKKILEK 146 (232)
Q Consensus 106 ~~e~l~~~l~--~~dGlIl~GG~~~~~~~~~~~~~~~~~~l~~ 146 (232)
+.+.+.+.++ .+|.||-..|.. .....+.+++.+.+.
T Consensus 71 d~~~l~~~~~~~~~d~Vi~~a~~~----n~~~~~~l~~aa~~~ 109 (346)
T 3i6i_A 71 EQEAMEKILKEHEIDIVVSTVGGE----SILDQIALVKAMKAV 109 (346)
T ss_dssp CHHHHHHHHHHTTCCEEEECCCGG----GGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHhhCCCCEEEECCchh----hHHHHHHHHHHHHHc
Confidence 3456677777 899999988763 112234556665554
No 226
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=20.05 E-value=2.5e+02 Score=23.33 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCeEEEEeCC-------CChHHHHHhhc--CCCEEEECC
Q 039121 86 SYVKFAESGGARVIPLIFN-------EPEEILFEKLE--LVNGILYTG 124 (232)
Q Consensus 86 s~v~~l~~~G~~vv~i~~~-------~~~e~l~~~l~--~~dGlIl~G 124 (232)
++.+.++..|++++.++.+ .+.+.+++.++ +...|+++.
T Consensus 121 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 121 MFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp HHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred HHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 4666788899999888763 45677777664 456676654
Done!