BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039123
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5SVZ6|ZMYM1_HUMAN Zinc finger MYM-type protein 1 OS=Homo sapiens GN=ZMYM1 PE=2 SV=1
Length = 1142
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 106/208 (50%), Gaps = 8/208 (3%)
Query: 66 GHNEYDNSSNQGNYILTLRFLA-DHNEDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEI 124
G+++ +S N+GN++ L A D E+ R+ N + IQ D++ + E+
Sbjct: 573 GNDQSVSSVNKGNFLELLEMRAKDKGEETFRLMNSQVDFYN---STQIQSDIIEIIKTEM 629
Query: 125 TNVIIRDVGDA-LFSILIDESRDASTKEQMVVALRYADKNG---YVFERFIGFKHVTCTT 180
I+ ++ D+ FSI+ DE+ +++ KEQ+ + +RY K+ + ERF+GF T
Sbjct: 630 LQDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAILIKERFLGFVDTEEMT 689
Query: 181 TISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQ 240
L + + G+ + ++H Q YD +N++ +FN + + A YIHC+ H
Sbjct: 690 GTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNLKIKFNKIAAEFKKEEPRALYIHCYAHF 749
Query: 241 LQLAIVAMAKKHDQINSFFNVIANVINV 268
L L+I+ K+ ++ S ++++ N
Sbjct: 750 LDLSIIRFCKEVKELRSALKTLSSLFNT 777
>sp|O43422|P52K_HUMAN 52 kDa repressor of the inhibitor of the protein kinase OS=Homo
sapiens GN=PRKRIR PE=1 SV=2
Length = 761
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 1/147 (0%)
Query: 91 EDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDA-LFSILIDESRDAST 149
E++ R + N L + + Q+ ++ +C I +R+V D+ FSI+ D+ D +
Sbjct: 213 EEVLRKRFETTAVNTLFCSKTQQRQMLEICESCIREETLREVRDSHFFSIITDDVVDIAG 272
Query: 150 KEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDG 209
+E + V +R+ D++ + E FIGF I + + K+GL++ Q Y
Sbjct: 273 EEHLPVLVRFVDESHNLREEFIGFLPYEADAEILAVKFHTMITEKWGLNMEYCRGQAYIV 332
Query: 210 ASNMQGEFNGLRTLIMNKNECAYYIHC 236
+S + + + ++ K A Y C
Sbjct: 333 SSGFSSKMKVVASRLLEKYPQAIYTLC 359
>sp|Q9CUX1|P52K_MOUSE 52 kDa repressor of the inhibitor of the protein kinase OS=Mus
musculus GN=Prkrir PE=2 SV=2
Length = 758
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 1/147 (0%)
Query: 91 EDIKRVTLKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDA-LFSILIDESRDAST 149
E++ R + N L + + Q+ ++ +C I +R+V D+ FSI+ D+ D +
Sbjct: 209 EEVLRKRFEATAVNTLFCSKTQQRHMLEICESCIREETLREVRDSHFFSIITDDVVDIAG 268
Query: 150 KEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDG 209
+E + V +R+ D + E F+GF I + + K+GL++ Q Y
Sbjct: 269 EEHLPVLVRFVDDAHNLREEFVGFLPYEADAEILAVKFHTTITEKWGLNMEYCRGQAYIV 328
Query: 210 ASNMQGEFNGLRTLIMNKNECAYYIHC 236
+S + + + ++ K A Y C
Sbjct: 329 SSGFSSKMKVVASRLLEKYPQAVYTLC 355
>sp|Q6R2W3|SCND3_HUMAN SCAN domain-containing protein 3 OS=Homo sapiens GN=SCAND3 PE=2 SV=1
Length = 1325
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 137 FSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTTISLKEAL-DQLFSKY 195
FS+ +DE RD + ++V +R+ + E F T TT+ L EA+ + + +K
Sbjct: 899 FSLQLDECRDIANMIILLVYVRFEHDDDIKEEFFFSASLPTNTTSSELYEAVKNYIVNKC 958
Query: 196 GLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVHQLQLAIVAMAKKHDQI 255
GL DGA++M G+ + + T I HCF+H+ L AM K ++
Sbjct: 959 GLEFKFCVGVCSDGAASMTGKHSEVVTQIKELAPECKTTHCFIHRESL---AMKKISAEL 1015
Query: 256 NSFFNVIANVIN 267
NS N I ++N
Sbjct: 1016 NSVLNDIVKIVN 1027
>sp|P0CF97|F200B_HUMAN Putative protein FAM200B OS=Homo sapiens GN=FAM200B PE=5 SV=1
Length = 657
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 117 VRVCSIEI---TNVIIRDVGDALFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGF 173
+R+C+I T +I R F+I +DES D + ++V +RYA ++ ++ E F+ F
Sbjct: 202 LRICTIAEHLETMLITRLQSGIDFAIQLDESTDIGSCTTLLVYVRYAWQDDFL-EDFLCF 260
Query: 174 KHVTC-TTTISLKEALD-QLFSKYGLSISRLHRQGYDGASNMQGEFNG-LRTLIMNKNEC 230
++T + + + L+ ++ +Y L+ DG + M G+ + ++ L+ N
Sbjct: 261 LNLTSHLSGLDIFTELERRIVGQYKLNWKNCKGITSDGTATMTGKHSRVIKKLLEVTNNG 320
Query: 231 AYYIHCFVHQLQLA 244
A + HCF+H+ LA
Sbjct: 321 AVWNHCFIHREGLA 334
>sp|Q4R6P1|F200A_MACFA Protein FAM200A OS=Macaca fascicularis GN=FAM200A PE=2 SV=1
Length = 573
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 118 RVCSI--EITNVIIRDVGDAL-FSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFK 174
R+C+I + ++I + + F+I +DES D ++ ++V +RY ++ +V +
Sbjct: 118 RICTIAKHLEAMLITRLQSGIDFAIQLDESTDIASCPTLLVYVRYVWQDDFVEDLLCCLN 177
Query: 175 HVTCTTTISLKEALDQ-LFSKYGLSISRLHRQGYDGASNMQGEFNGL-RTLIMNKNECAY 232
+ T + L L+ + +Y L+ DGA+NM G+ + L L+ + A
Sbjct: 178 LNSHITGLDLFTELENCIVGQYKLNWKHCKGISSDGAANMTGKHSRLTEKLLEATHNNAL 237
Query: 233 YIHCFVHQ 240
+ HCF+H+
Sbjct: 238 WNHCFIHR 245
>sp|Q8TCP9|F200A_HUMAN Protein FAM200A OS=Homo sapiens GN=FAM200A PE=2 SV=1
Length = 573
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 118 RVCSI--EITNVIIRDVGDAL-FSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFK 174
R+C+I + ++I + + F+I +DES D ++ ++V +RY ++ +V +
Sbjct: 118 RICTIAKHLEAMLITRLQSGIDFAIQLDESTDIASCPTLLVYVRYVWQDDFVEDLLCCLN 177
Query: 175 HVTCTTTISLKEALDQ-LFSKYGLSISRLHRQGYDGASNMQGEFNGL-RTLIMNKNECAY 232
+ T + L L+ L +Y L+ DG +NM G+ + L L+ + A
Sbjct: 178 LNSHITGLDLFTELENCLLGQYKLNWKHCKGISSDGTANMTGKHSRLTEKLLEATHNNAV 237
Query: 233 YIHCFVHQ 240
+ HCF+H+
Sbjct: 238 WNHCFIHR 245
>sp|O95789|ZMYM6_HUMAN Zinc finger MYM-type protein 6 OS=Homo sapiens GN=ZMYM6 PE=2 SV=2
Length = 1325
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 15/153 (9%)
Query: 98 LKNAPRNNLLIALSIQKDLVRVCSIEITNVIIRDVGDA-LFSILIDESRDASTKEQMVVA 156
+K P +N+ I I + S +I + +I+ V ++ F++ IDES + S ++
Sbjct: 873 MKTIPLSNVTIQHRIDE-----LSADIEDQLIQKVRESKWFALQIDESSEISNITLLLCY 927
Query: 157 LRYADKNGYVF--ERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQGYDGASNMQ 214
+R+ D + E + T T + E +++ L+ DGA++M
Sbjct: 928 IRFIDYDCRDVKEELLFCIEMPTQITGFEIFELINKYIDSKSLNWKHCVGLCTDGAASMT 987
Query: 215 GEFNGLRTLI----MNKNECAYYIHCFVHQLQL 243
G ++GL+ I MN A + HCF+H+ +L
Sbjct: 988 GRYSGLKAKIQEVAMNT---AAFTHCFIHRERL 1017
>sp|A8GE00|RNFC_SERP5 Electron transport complex protein RnfC OS=Serratia proteamaculans
(strain 568) GN=rnfC PE=3 SV=1
Length = 703
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 207 YDGASNMQGEFNGLRTLIMNKNECAYYI 234
+ AS +QG NG+ TLI+N EC YI
Sbjct: 152 FPTASKLQGGMNGVETLILNAAECEPYI 179
>sp|O60290|ZN862_HUMAN Zinc finger protein 862 OS=Homo sapiens GN=ZNF862 PE=2 SV=2
Length = 1169
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 14/127 (11%)
Query: 128 IIRDVGDA-LFSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTT----- 181
I+ DV ++ S+L+D S DAS + + + +RY K V E +I + T
Sbjct: 614 ILEDVRNSPCVSVLLDSSTDASEQACVGIYIRYF-KQMEVKESYITLAPLYSETADGYFE 672
Query: 182 --ISLKEALDQLFSKYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECAYYIHCFVH 239
+S + LD F K G + G DG S M GL +HC H
Sbjct: 673 TIVSALDELDIPFRKPGWVVG----LGTDG-SAMLSCRGGLVEKFQEVIPQLLPVHCVAH 727
Query: 240 QLQLAIV 246
+L LA+V
Sbjct: 728 RLHLAVV 734
>sp|A7FHZ3|RNFC_YERP3 Electron transport complex protein RnfC OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rnfC PE=3 SV=1
Length = 698
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 207 YDGASNMQGEFNGLRTLIMNKNECAYYI 234
+ AS +QG NG+ TLI+N EC YI
Sbjct: 152 FPTASKLQGGLNGIITLIINAAECEPYI 179
>sp|B2K4K0|RNFC_YERPB Electron transport complex protein RnfC OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rnfC
PE=3 SV=1
Length = 659
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 207 YDGASNMQGEFNGLRTLIMNKNECAYYI 234
+ AS +QG NG+ TLI+N EC YI
Sbjct: 152 FPTASKLQGGLNGIITLIINAAECEPYI 179
>sp|B1JKN4|RNFC_YERPY Electron transport complex protein RnfC OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rnfC
PE=3 SV=1
Length = 698
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 207 YDGASNMQGEFNGLRTLIMNKNECAYYI 234
+ AS +QG NG+ TLI+N EC YI
Sbjct: 152 FPTASKLQGGLNGIITLIINAAECEPYI 179
>sp|Q1CIY9|RNFC_YERPN Electron transport complex protein RnfC OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=rnfC PE=3 SV=1
Length = 659
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 207 YDGASNMQGEFNGLRTLIMNKNECAYYI 234
+ AS +QG NG+ TLI+N EC YI
Sbjct: 152 FPTASKLQGGLNGIITLIINAAECEPYI 179
>sp|A9R8U6|RNFC_YERPG Electron transport complex protein RnfC OS=Yersinia pestis bv.
Antiqua (strain Angola) GN=rnfC PE=3 SV=1
Length = 659
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 207 YDGASNMQGEFNGLRTLIMNKNECAYYI 234
+ AS +QG NG+ TLI+N EC YI
Sbjct: 152 FPTASKLQGGLNGIITLIINAAECEPYI 179
>sp|Q1C7K3|RNFC_YERPA Electron transport complex protein RnfC OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=rnfC PE=3 SV=1
Length = 620
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 207 YDGASNMQGEFNGLRTLIMNKNECAYYI 234
+ AS +QG NG+ TLI+N EC YI
Sbjct: 152 FPTASKLQGGLNGIITLIINAAECEPYI 179
>sp|Q5RJG7|ISPD_MOUSE Isoprenoid synthase domain-containing protein OS=Mus musculus
GN=Ispd PE=2 SV=1
Length = 447
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 22/122 (18%)
Query: 167 FERFIGFKHVTCTTTISLKEALDQLFSKYGLSISRLHRQ---GYDGASNMQGEFNGLRTL 223
ER K + T T EA+ + +YG H++ GA+ + FNGL+ L
Sbjct: 82 MERVCWIKDIVVTVTGENMEAMRSIIQRYG------HKRISLAEAGATRHRSIFNGLKAL 135
Query: 224 IMNKNEC------AYYIH----CFVHQ-LQLAIVAMAKKHDQINSFFNVIANVI--NVDG 270
++ +C IH FV + + L +V AK+H + +++ VI + DG
Sbjct: 136 AEDQPDCKLTKPEVVIIHDAVRPFVEEDILLRVVLAAKEHGAAGAIRPLVSTVISPSADG 195
Query: 271 PL 272
L
Sbjct: 196 HL 197
>sp|A1JM81|RNFC_YERE8 Electron transport complex protein RnfC OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=rnfC PE=3
SV=1
Length = 697
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 207 YDGASNMQGEFNGLRTLIMNKNECAYYI 234
+ AS +QG N + TLI+N EC YI
Sbjct: 152 FPTASKLQGGLNSVTTLIINAAECEPYI 179
>sp|A4IFA3|GT2D2_BOVIN General transcription factor II-I repeat domain-containing protein
2 OS=Bos taurus GN=GTF2IRD2 PE=2 SV=1
Length = 950
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 137 FSILIDESRDASTKEQMVVALRYADKNGYVFERFIGFKHVTCTTT---ISLKEALDQLFS 193
+SI IDE D + Q+ + +R D+N V E + +T T + I L+ +++
Sbjct: 548 YSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLR--VEKSLK 605
Query: 194 KYGLSISRLHRQGYDGASNMQGEFNGLRTLIMNKNECA------YYIHCFVHQLQLAIVA 247
K+ + S+L G M +GL T + +K + C +H L A
Sbjct: 606 KFNIDWSKLVSVASTGTPAMVDANDGLVTKLKSKVAMVCKGSDLKSVCCIIHPESLC--A 663
Query: 248 MAKKHDQINSFFNVIANVINVDGPLCKR 275
K D I S V+ N +N +C R
Sbjct: 664 QKLKMDHIMS---VVVNAVNW---ICSR 685
>sp|C6DH15|RNFC_PECCP Electron transport complex protein RnfC OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rnfC PE=3
SV=1
Length = 747
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 207 YDGASNMQGEFNGLRTLIMNKNECAYYI 234
+ A+ +QG G+ TLI+N EC YI
Sbjct: 152 FPTAAKLQGGMRGIETLIINGAECEPYI 179
>sp|Q6D4W2|RNFC_ERWCT Electron transport complex protein RnfC OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=rnfC PE=3 SV=1
Length = 693
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 207 YDGASNMQGEFNGLRTLIMNKNECAYYI 234
+ A+ +QG G+ TLI+N EC YI
Sbjct: 152 FPTAAKLQGGMRGIETLIINGAECEPYI 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,710,508
Number of Sequences: 539616
Number of extensions: 4048219
Number of successful extensions: 9049
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 9028
Number of HSP's gapped (non-prelim): 28
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)