BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039124
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQ 139
+ P S FD +G YT + DGR++++ G N G+ FA + W++ C D+
Sbjct: 10 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA----- 64
Query: 140 WKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPI--LFAND 197
+ CGR + +N LYI D YY L VVGS+GG AT LAT G P L+A
Sbjct: 65 -EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVT 123
Query: 198 LDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWL 250
+D + G ++FTD S Y+ I+ + TGRL++YDP TK + ++ L
Sbjct: 124 VD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL 175
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQ 139
+ P S FD +G YT + DGR++++ G N G+ FA + W++ C D+
Sbjct: 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA----- 73
Query: 140 WKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPI--LFAND 197
+ CGR + +N LYI D YY L VVGS+GG AT LAT G P L+A
Sbjct: 74 -EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVT 132
Query: 198 LDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWL 250
+D + G ++FTD S Y+ I+ + TGRL++YDP TK + ++ L
Sbjct: 133 VD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL 184
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Query: 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQ 139
+ P S FD +G YT + DGR+ ++ G N G+ FA + W++ C D+
Sbjct: 19 YAPNSFTFDSTNKGFYTSVQDGRVXKYEGPNSGFVDFAYASPYWNKAFCENSTDA----- 73
Query: 140 WKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPI--LFAND 197
+ CGR + +N YI D YY L VVGS+GG AT LAT G P L+A
Sbjct: 74 -EKRPLCGRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVT 132
Query: 198 LDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWL 250
+D + G ++FTD S Y+ I + TGRL +YDP TK + + L
Sbjct: 133 VD-QRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKEL 184
>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase),
Mutant D229n N175D
Length = 314
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 131 WITAPAGEVAPADY 144
>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris
pdb|1PJX|A Chain A, 0.85 Angstrom Structure Of Squid Ganglion Dfpase
pdb|2GVV|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase) In
Complex With Dicyclopentylphosphoroamidate (Dcppa)
pdb|2GVW|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase)
Holoenzyme (Rt)
pdb|3BYC|A Chain A, Joint Neutron And X-Ray Structure Of Diisopropyl
Fluorophosphatase. Deuterium Occupancies Are 1-Q, Where
Q Is Occupancy Of H
pdb|3KGG|A Chain A, X-Ray Structure Of Perdeuterated Diisopropyl
Fluorophosphata (Dfpase): Perdeuteration Of Proteins For
Neutron Diffractio
pdb|3O4P|A Chain A, Dfpase At 0.85 Angstrom Resolution (H Atoms Included)
Length = 314
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 131 WITAPAGEVAPADY 144
>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant
Length = 312
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 129 WITAPAGEVAPADY 142
>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant
Length = 312
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 129 WITAPAGEVAPADY 142
>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant
Length = 312
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 129 WITAPAGEVAPADY 142
>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant
Length = 312
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 129 WITAPAGEVAPADY 142
>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant
Length = 312
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 129 WITAPAGEVAPADY 142
>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant
Length = 312
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 129 WITAPAGEVAPADY 142
>pdb|3HLI|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 207 FFT 209
+ T
Sbjct: 131 WIT 133
>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant
Length = 312
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 129 WITAPAGEVAPADY 142
>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant
Length = 312
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 129 WITAPAGEVAPADY 142
>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant
Length = 312
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 129 WITAPAGEVAPADY 142
>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant
Length = 312
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 129 WITAPAGEVAPADY 142
>pdb|3HLH|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + ND G++
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 207 FFT 209
+ T
Sbjct: 131 WIT 133
>pdb|3LI3|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), D121e Mutant
Length = 314
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + N+ G++
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNECAFDYEGNL 130
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 131 WITAPAGEVAPADY 144
>pdb|2GVU|A Chain A, Crystal Structure Of Diisopropyl Fluorophosphatase
(Dfpase), Mutant D229n N120D
Length = 314
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + +D G++
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNL 130
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 131 WITAPAGEVAPADY 144
>pdb|3LI5|A Chain A, Diisopropyl Fluorophosphatase (Dfpase),
E21q,N120d,N175d,D229n Mutant
Length = 314
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + +D G++
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNL 130
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 131 WITAPAGEVAPADY 144
>pdb|3LI4|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), N120d,N175d,D229n
Mutant
Length = 314
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSI 206
G P G + ++D L++AD GLLVV + G + G+ + +D G++
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNL 130
Query: 207 FFTDTSKRYNRVDH 220
+ T + D+
Sbjct: 131 WITAPAGEVAPADY 144
>pdb|3U0S|A Chain A, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
pdb|3U0S|B Chain B, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
Length = 337
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKG 177
G P+G + ++D L++AD GLLVV + G
Sbjct: 84 GSPIGCQCDRDANQLFVADMRLGLLVVQTDG 114
>pdb|3I1C|A Chain A, Crystal Structure Of A Novel Engineered Diels-Alderase:
Da_20_00_a74i
Length = 324
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKG 177
G P+G + ++D L++AD GLLVV + G
Sbjct: 71 GIPIGCQCDRDANQLFVADMRLGLLVVQTDG 101
>pdb|1EJ6|A Chain A, Reovirus Core
pdb|2CSE|U Chain U, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1289
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 191 PILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCV 247
P LFA DL + F++DT Y +D FF S G L+ YD PT + Y +
Sbjct: 185 PPLFAKDLSDYAKA--FYSDT---YEVLDRFF-WTHDSSAGVLVHYDKPTNGHHYLL 235
>pdb|1CQQ|A Chain A, Type 2 Rhinovirus 3c Protease With Ag7088 Inhibitor
Length = 180
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 223 ILLEGESTGRLLRYDPPTKSNSYC 246
ILL G T R+L+Y PTKS YC
Sbjct: 125 ILLSGNQTARMLKYSYPTKS-GYC 147
>pdb|2XYA|A Chain A, Non-Covalent Inhibtors Of Rhinovirus 3c Protease
Length = 182
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 223 ILLEGESTGRLLRYDPPTKSNSYC 246
ILL G T R+L+Y PTKS YC
Sbjct: 127 ILLSGNQTARMLKYSYPTKS-GYC 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,824,623
Number of Sequences: 62578
Number of extensions: 385502
Number of successful extensions: 874
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 48
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)