Query 039124
Match_columns 259
No_of_seqs 243 out of 1275
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 2.8E-44 6E-49 327.2 17.0 221 13-258 4-226 (376)
2 PF03088 Str_synth: Strictosid 99.8 9.8E-22 2.1E-26 147.3 3.6 63 196-258 1-64 (89)
3 PF08450 SGL: SMP-30/Gluconola 99.8 1.4E-19 3.1E-24 158.7 15.0 138 82-258 2-141 (246)
4 COG3386 Gluconolactonase [Carb 99.8 2E-17 4.2E-22 150.6 15.8 146 77-258 22-170 (307)
5 TIGR02604 Piru_Ver_Nterm putat 99.5 1.2E-12 2.5E-17 122.1 17.3 160 72-258 5-191 (367)
6 PF08450 SGL: SMP-30/Gluconola 99.3 5.2E-11 1.1E-15 104.3 15.7 134 78-258 84-232 (246)
7 PLN02919 haloacid dehalogenase 99.3 3.5E-10 7.5E-15 118.2 19.3 153 76-258 564-747 (1057)
8 PLN02919 haloacid dehalogenase 99.1 2.6E-09 5.7E-14 111.7 19.0 152 79-258 682-866 (1057)
9 COG4257 Vgb Streptogramin lyas 99.1 2.4E-09 5.2E-14 94.9 13.7 119 71-216 53-171 (353)
10 KOG1520 Predicted alkaloid syn 98.8 1.3E-07 2.9E-12 87.3 13.5 209 15-257 9-271 (376)
11 COG3386 Gluconolactonase [Carb 98.7 7.5E-07 1.6E-11 81.4 15.8 123 78-246 109-250 (307)
12 COG4257 Vgb Streptogramin lyas 98.5 4E-06 8.7E-11 74.7 14.0 133 68-246 92-225 (353)
13 PF07995 GSDH: Glucose / Sorbo 98.5 2.7E-06 5.9E-11 78.4 12.7 156 79-258 1-188 (331)
14 TIGR03606 non_repeat_PQQ dehyd 98.4 1.7E-05 3.6E-10 76.1 18.0 168 71-258 22-237 (454)
15 PF03088 Str_synth: Strictosid 98.4 3.1E-06 6.8E-11 63.5 8.9 68 150-239 1-87 (89)
16 PF10282 Lactonase: Lactonase, 98.4 2.4E-05 5.3E-10 72.2 16.6 156 68-258 180-343 (345)
17 TIGR02604 Piru_Ver_Nterm putat 98.3 8.8E-06 1.9E-10 75.9 13.2 111 74-213 66-204 (367)
18 COG2706 3-carboxymuconate cycl 98.3 0.00011 2.4E-09 67.3 18.0 160 65-259 176-343 (346)
19 PRK11028 6-phosphogluconolacto 98.3 0.00012 2.5E-09 66.7 18.5 144 80-258 175-327 (330)
20 KOG1214 Nidogen and related ba 98.3 9.8E-06 2.1E-10 80.8 11.8 145 67-257 1053-1204(1289)
21 COG3391 Uncharacterized conser 98.2 0.00013 2.8E-09 68.6 17.4 122 81-245 117-245 (381)
22 KOG4659 Uncharacterized conser 98.2 2.4E-05 5.1E-10 81.1 13.1 123 79-212 406-553 (1899)
23 KOG4499 Ca2+-binding protein R 98.1 3.3E-05 7.1E-10 67.6 11.1 82 145-243 156-245 (310)
24 KOG1214 Nidogen and related ba 98.1 3.9E-05 8.4E-10 76.7 11.9 135 80-258 1025-1163(1289)
25 PF10282 Lactonase: Lactonase, 98.0 0.00091 2E-08 61.8 19.7 113 79-213 143-266 (345)
26 KOG4499 Ca2+-binding protein R 97.9 6.1E-05 1.3E-09 66.0 9.2 143 83-258 18-165 (310)
27 TIGR03866 PQQ_ABC_repeats PQQ- 97.9 0.002 4.4E-08 56.1 18.4 136 80-258 157-298 (300)
28 PF06977 SdiA-regulated: SdiA- 97.7 0.00045 9.8E-09 61.4 11.9 113 79-210 117-239 (248)
29 PF05096 Glu_cyclase_2: Glutam 97.7 0.0016 3.5E-08 58.2 15.0 134 77-258 87-238 (264)
30 PRK11028 6-phosphogluconolacto 97.7 0.0012 2.5E-08 60.1 14.6 109 80-211 80-194 (330)
31 COG3391 Uncharacterized conser 97.7 0.002 4.3E-08 60.5 16.5 103 79-212 73-180 (381)
32 KOG4659 Uncharacterized conser 97.5 0.0012 2.5E-08 69.1 12.3 125 78-214 473-614 (1899)
33 TIGR03866 PQQ_ABC_repeats PQQ- 97.4 0.014 3E-07 50.8 16.3 89 91-211 1-92 (300)
34 PF01731 Arylesterase: Arylest 97.3 0.00027 5.9E-09 52.7 4.2 59 196-258 1-61 (86)
35 PF01436 NHL: NHL repeat; Int 97.3 0.00036 7.8E-09 40.8 3.8 22 192-213 1-22 (28)
36 PF03022 MRJP: Major royal jel 97.3 0.003 6.5E-08 57.2 11.0 86 150-253 4-110 (287)
37 TIGR02658 TTQ_MADH_Hv methylam 97.1 0.019 4E-07 53.7 14.5 67 144-212 44-125 (352)
38 COG2133 Glucose/sorbosone dehy 97.0 0.057 1.2E-06 51.1 16.8 176 71-258 59-246 (399)
39 PF07995 GSDH: Glucose / Sorbo 96.9 0.013 2.8E-07 54.1 12.0 129 70-212 172-325 (331)
40 PF05787 DUF839: Bacterial pro 96.9 0.013 2.7E-07 57.6 12.5 88 71-167 341-456 (524)
41 COG3211 PhoX Predicted phospha 96.8 0.0084 1.8E-07 58.5 10.1 128 70-209 407-571 (616)
42 TIGR02658 TTQ_MADH_Hv methylam 96.8 0.11 2.4E-06 48.5 16.9 118 90-247 205-338 (352)
43 COG3204 Uncharacterized protei 96.7 0.021 4.5E-07 51.7 10.7 115 79-210 180-301 (316)
44 PRK04792 tolB translocation pr 96.6 0.12 2.6E-06 49.6 16.3 118 83-247 265-390 (448)
45 PRK01029 tolB translocation pr 96.6 0.22 4.7E-06 47.6 18.0 121 83-248 284-412 (428)
46 PRK04792 tolB translocation pr 96.5 0.19 4.1E-06 48.3 17.1 116 84-246 222-345 (448)
47 TIGR03032 conserved hypothetic 96.5 0.035 7.6E-07 50.8 11.3 102 69-203 193-315 (335)
48 COG3823 Glutamine cyclotransfe 96.5 0.034 7.4E-07 48.2 10.3 93 147-259 131-237 (262)
49 PF14583 Pectate_lyase22: Olig 96.4 0.029 6.2E-07 52.8 10.4 97 151-249 85-186 (386)
50 PF01436 NHL: NHL repeat; Int 96.4 0.0068 1.5E-07 35.3 3.9 28 79-106 1-28 (28)
51 PF05787 DUF839: Bacterial pro 96.3 0.051 1.1E-06 53.4 12.0 104 144-248 347-497 (524)
52 COG2133 Glucose/sorbosone dehy 96.3 0.15 3.2E-06 48.4 14.4 156 61-239 221-397 (399)
53 TIGR03300 assembly_YfgL outer 96.3 0.47 1E-05 43.9 17.6 68 84-180 60-127 (377)
54 PRK04043 tolB translocation pr 96.3 0.28 6E-06 46.8 16.3 117 84-247 192-317 (419)
55 PRK03629 tolB translocation pr 96.2 0.38 8.1E-06 45.9 17.1 118 84-248 247-372 (429)
56 PRK05137 tolB translocation pr 96.2 0.38 8.2E-06 45.7 17.1 119 82-247 204-330 (435)
57 TIGR03032 conserved hypothetic 96.2 0.032 7E-07 51.1 9.0 88 146-243 202-294 (335)
58 PRK04922 tolB translocation pr 96.0 0.57 1.2E-05 44.5 17.4 117 84-247 252-376 (433)
59 PRK00178 tolB translocation pr 96.0 0.59 1.3E-05 44.1 17.3 117 83-246 202-326 (430)
60 KOG1446 Histone H3 (Lys4) meth 95.9 0.6 1.3E-05 42.5 15.8 129 79-249 140-272 (311)
61 PRK04922 tolB translocation pr 95.8 0.58 1.3E-05 44.4 16.5 94 84-209 208-309 (433)
62 smart00135 LY Low-density lipo 95.8 0.026 5.6E-07 35.1 5.0 39 73-111 2-41 (43)
63 PRK03629 tolB translocation pr 95.8 0.92 2E-05 43.2 17.7 117 83-246 202-326 (429)
64 KOG0266 WD40 repeat-containing 95.8 0.48 1E-05 45.6 15.8 107 76-211 200-307 (456)
65 PRK00178 tolB translocation pr 95.8 0.66 1.4E-05 43.8 16.6 118 84-248 247-372 (430)
66 TIGR02800 propeller_TolB tol-p 95.8 0.79 1.7E-05 42.7 16.9 117 84-247 194-318 (417)
67 PTZ00421 coronin; Provisional 95.8 0.97 2.1E-05 44.1 17.9 117 74-212 70-188 (493)
68 TIGR02800 propeller_TolB tol-p 95.7 0.73 1.6E-05 42.9 16.4 118 83-247 237-362 (417)
69 PF03022 MRJP: Major royal jel 95.7 0.047 1E-06 49.4 8.0 62 148-212 187-255 (287)
70 PRK05137 tolB translocation pr 95.7 0.57 1.2E-05 44.5 15.7 120 83-247 293-420 (435)
71 PF13360 PQQ_2: PQQ-like domai 95.7 0.83 1.8E-05 38.7 15.3 121 82-244 115-235 (238)
72 PF14339 DUF4394: Domain of un 95.6 0.14 3E-06 45.1 10.3 91 147-255 27-119 (236)
73 PRK11138 outer membrane biogen 95.5 0.27 5.8E-06 46.0 12.7 87 91-211 256-343 (394)
74 COG2706 3-carboxymuconate cycl 95.5 0.85 1.8E-05 42.2 15.3 152 63-246 72-230 (346)
75 PF06977 SdiA-regulated: SdiA- 95.5 0.55 1.2E-05 41.7 13.9 125 72-212 57-191 (248)
76 cd00200 WD40 WD40 domain, foun 95.5 1.2 2.6E-05 37.0 16.0 99 83-211 55-154 (289)
77 PF13449 Phytase-like: Esteras 95.5 0.58 1.3E-05 43.0 14.5 89 149-240 87-193 (326)
78 PF13360 PQQ_2: PQQ-like domai 95.5 0.6 1.3E-05 39.6 13.8 107 91-243 36-144 (238)
79 cd00200 WD40 WD40 domain, foun 95.3 1.4 3E-05 36.6 17.4 101 80-210 94-196 (289)
80 KOG0315 G-protein beta subunit 95.3 0.7 1.5E-05 41.2 13.5 94 83-207 87-182 (311)
81 KOG0266 WD40 repeat-containing 95.3 1.3 2.8E-05 42.6 16.6 114 72-212 239-354 (456)
82 PRK11138 outer membrane biogen 95.2 0.31 6.8E-06 45.6 12.0 76 85-179 65-141 (394)
83 PF14517 Tachylectin: Tachylec 95.1 0.064 1.4E-06 47.1 6.4 141 64-242 65-209 (229)
84 PF00058 Ldl_recept_b: Low-den 95.0 0.087 1.9E-06 33.6 5.3 39 204-258 1-40 (42)
85 PRK02889 tolB translocation pr 95.0 2 4.2E-05 40.9 16.8 94 84-209 200-301 (427)
86 PF02239 Cytochrom_D1: Cytochr 94.9 1.1 2.4E-05 42.0 14.8 108 80-209 78-188 (369)
87 TIGR03300 assembly_YfgL outer 94.9 0.61 1.3E-05 43.1 13.0 60 91-179 241-300 (377)
88 PF13449 Phytase-like: Esteras 94.9 1 2.2E-05 41.4 14.1 137 81-239 86-251 (326)
89 PF02239 Cytochrom_D1: Cytochr 94.8 1.1 2.4E-05 42.0 14.4 71 82-179 39-111 (369)
90 KOG0291 WD40-repeat-containing 94.7 1.4 2.9E-05 44.7 15.1 101 78-211 391-497 (893)
91 PRK01742 tolB translocation pr 94.7 1.9 4.1E-05 41.0 15.8 95 83-209 207-309 (429)
92 PF07433 DUF1513: Protein of u 94.5 0.75 1.6E-05 42.1 12.1 100 86-210 57-180 (305)
93 PRK02889 tolB translocation pr 94.4 2.3 5.1E-05 40.3 15.9 117 84-247 244-368 (427)
94 PRK04043 tolB translocation pr 94.4 4.4 9.5E-05 38.7 17.6 123 84-249 237-367 (419)
95 COG3211 PhoX Predicted phospha 94.2 0.4 8.7E-06 47.1 10.1 70 144-213 414-521 (616)
96 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.2 1.2 2.5E-05 43.9 13.6 123 91-244 69-194 (527)
97 KOG0291 WD40-repeat-containing 94.0 1.4 2.9E-05 44.8 13.4 107 79-216 350-459 (893)
98 PF14269 Arylsulfotran_2: Aryl 93.7 2.6 5.7E-05 38.4 14.1 131 79-243 143-292 (299)
99 COG1520 FOG: WD40-like repeat 93.6 1.1 2.5E-05 41.4 11.9 111 87-243 65-175 (370)
100 PF02333 Phytase: Phytase; In 93.6 5.1 0.00011 37.9 16.0 68 146-213 207-281 (381)
101 PF07433 DUF1513: Protein of u 93.6 0.83 1.8E-05 41.8 10.4 78 146-239 4-85 (305)
102 cd00216 PQQ_DH Dehydrogenases 93.5 1.7 3.7E-05 42.1 13.3 125 91-244 61-188 (488)
103 PRK01742 tolB translocation pr 93.5 3.6 7.9E-05 39.0 15.3 53 151-210 337-390 (429)
104 cd00216 PQQ_DH Dehydrogenases 93.4 1.9 4.2E-05 41.8 13.5 76 161-244 304-379 (488)
105 KOG0289 mRNA splicing factor [ 93.2 2 4.4E-05 41.0 12.5 130 82-258 350-484 (506)
106 KOG0772 Uncharacterized conser 93.0 0.92 2E-05 44.1 10.1 128 63-214 297-431 (641)
107 KOG0279 G protein beta subunit 93.0 4.2 9.2E-05 36.8 13.6 112 70-209 96-209 (315)
108 PF05096 Glu_cyclase_2: Glutam 93.0 2.6 5.7E-05 37.8 12.4 98 84-211 134-250 (264)
109 KOG4649 PQQ (pyrrolo-quinoline 92.7 2.2 4.9E-05 38.4 11.4 121 72-245 48-171 (354)
110 COG3204 Uncharacterized protei 92.5 4.6 0.0001 36.9 13.3 157 72-258 121-291 (316)
111 KOG1274 WD40 repeat protein [G 92.3 3 6.4E-05 43.1 13.1 115 72-207 131-247 (933)
112 KOG2106 Uncharacterized conser 92.2 2 4.3E-05 41.8 11.2 66 143-213 443-512 (626)
113 PTZ00420 coronin; Provisional 91.2 16 0.00035 36.4 16.8 114 75-211 70-186 (568)
114 PF06739 SBBP: Beta-propeller 91.1 0.17 3.7E-06 31.6 2.0 20 193-212 13-32 (38)
115 KOG4649 PQQ (pyrrolo-quinoline 90.9 3.9 8.4E-05 36.9 10.9 70 85-179 99-168 (354)
116 KOG0293 WD40 repeat-containing 90.8 4.6 0.0001 38.5 11.8 141 79-249 312-480 (519)
117 PF00058 Ldl_recept_b: Low-den 90.7 1.2 2.7E-05 28.2 5.8 40 159-202 1-42 (42)
118 PF01731 Arylesterase: Arylest 90.5 0.8 1.7E-05 34.1 5.4 23 191-213 52-75 (86)
119 smart00135 LY Low-density lipo 90.0 0.97 2.1E-05 27.6 4.9 34 145-178 7-41 (43)
120 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.5 1.8 3.9E-05 42.6 8.5 67 158-244 69-143 (527)
121 COG1520 FOG: WD40-like repeat 89.3 1.6 3.5E-05 40.4 7.8 69 154-243 65-133 (370)
122 KOG0263 Transcription initiati 89.3 2.9 6.3E-05 42.2 9.8 114 69-213 525-640 (707)
123 PF14269 Arylsulfotran_2: Aryl 89.1 5.3 0.00012 36.4 10.8 90 149-247 146-248 (299)
124 TIGR02276 beta_rpt_yvtn 40-res 88.9 1.9 4.1E-05 26.4 5.6 29 230-258 13-41 (42)
125 TIGR03606 non_repeat_PQQ dehyd 88.9 6.4 0.00014 38.1 11.6 66 145-211 28-104 (454)
126 PRK02888 nitrous-oxide reducta 88.6 7.9 0.00017 38.9 12.3 67 141-210 315-392 (635)
127 PTZ00421 coronin; Provisional 88.5 26 0.00056 34.3 18.1 78 76-179 122-201 (493)
128 KOG0272 U4/U6 small nuclear ri 88.4 4.3 9.3E-05 38.6 9.7 110 73-212 211-323 (459)
129 PF06433 Me-amine-dh_H: Methyl 88.4 19 0.00042 33.5 13.9 134 85-254 189-335 (342)
130 KOG0265 U5 snRNP-specific prot 87.8 9.8 0.00021 34.8 11.3 102 79-209 43-149 (338)
131 KOG0299 U3 snoRNP-associated p 87.6 18 0.0004 34.7 13.4 120 69-209 317-443 (479)
132 KOG4441 Proteins containing BT 87.1 7.1 0.00015 38.9 11.1 117 90-247 332-460 (571)
133 TIGR03803 Gloeo_Verruco Gloeo_ 86.8 1.9 4.2E-05 26.3 4.4 31 203-246 1-31 (34)
134 KOG1273 WD40 repeat protein [G 86.8 13 0.00029 34.3 11.6 34 78-111 64-97 (405)
135 PRK01029 tolB translocation pr 86.8 29 0.00064 33.0 16.5 78 151-249 285-369 (428)
136 PLN00181 protein SPA1-RELATED; 86.7 41 0.00089 34.6 17.0 109 82-212 486-596 (793)
137 KOG0273 Beta-transducin family 86.5 30 0.00065 33.6 14.2 79 80-185 236-315 (524)
138 KOG0296 Angio-associated migra 85.8 31 0.00068 32.4 14.2 103 78-210 147-251 (399)
139 PF14583 Pectate_lyase22: Olig 85.5 6.1 0.00013 37.4 9.1 57 168-247 60-118 (386)
140 TIGR03074 PQQ_membr_DH membran 85.4 22 0.00048 36.8 13.9 77 159-245 261-350 (764)
141 PF05694 SBP56: 56kDa selenium 85.2 4.6 9.9E-05 38.9 8.2 92 146-240 311-420 (461)
142 COG3292 Predicted periplasmic 84.6 2.7 5.8E-05 41.6 6.4 98 84-212 169-266 (671)
143 COG0823 TolB Periplasmic compo 84.3 25 0.00055 33.7 13.0 76 152-248 243-323 (425)
144 COG3292 Predicted periplasmic 84.2 13 0.00028 37.0 10.9 61 150-214 250-311 (671)
145 COG3823 Glutamine cyclotransfe 84.1 3.3 7.1E-05 36.2 6.1 52 159-211 186-248 (262)
146 KOG0318 WD40 repeat stress pro 83.9 21 0.00045 35.1 12.0 81 71-176 312-392 (603)
147 COG4946 Uncharacterized protei 83.5 31 0.00066 33.8 12.8 105 73-209 395-506 (668)
148 PF00400 WD40: WD domain, G-be 83.3 5 0.00011 23.9 5.3 34 74-107 6-39 (39)
149 KOG0272 U4/U6 small nuclear ri 83.0 12 0.00026 35.7 9.8 111 71-211 337-449 (459)
150 KOG0318 WD40 repeat stress pro 82.4 51 0.0011 32.5 14.0 106 79-211 443-549 (603)
151 COG3490 Uncharacterized protei 82.2 12 0.00026 34.3 9.1 63 148-211 163-244 (366)
152 PRK02888 nitrous-oxide reducta 81.9 28 0.00061 35.1 12.5 92 69-177 312-405 (635)
153 COG4946 Uncharacterized protei 81.3 47 0.001 32.5 13.2 58 143-205 398-456 (668)
154 smart00564 PQQ beta-propeller 80.8 3.3 7.2E-05 24.0 3.7 15 230-244 15-29 (33)
155 PF07494 Reg_prop: Two compone 80.6 2.2 4.7E-05 23.7 2.6 20 191-210 3-22 (24)
156 TIGR03074 PQQ_membr_DH membran 80.2 9.7 0.00021 39.3 9.0 84 158-244 194-283 (764)
157 KOG0278 Serine/threonine kinas 79.6 47 0.001 30.0 11.8 113 80-239 185-299 (334)
158 KOG1215 Low-density lipoprotei 79.0 34 0.00074 35.7 12.7 112 75-215 475-590 (877)
159 KOG1215 Low-density lipoprotei 79.0 40 0.00088 35.1 13.3 105 80-213 437-544 (877)
160 KOG0303 Actin-binding protein 78.9 35 0.00077 32.5 11.3 118 68-216 120-239 (472)
161 PHA02713 hypothetical protein; 78.9 45 0.00098 33.0 13.0 63 170-247 434-497 (557)
162 PF08662 eIF2A: Eukaryotic tra 78.5 39 0.00085 28.4 12.2 96 82-212 62-163 (194)
163 PLN00033 photosystem II stabil 78.5 55 0.0012 31.1 13.0 58 149-209 330-387 (398)
164 PF06739 SBBP: Beta-propeller 78.3 4.1 9E-05 25.3 3.6 22 80-101 13-34 (38)
165 PRK13684 Ycf48-like protein; P 78.2 43 0.00092 30.8 11.9 30 148-179 216-246 (334)
166 KOG0282 mRNA splicing factor [ 77.0 14 0.0003 35.8 8.3 32 80-111 300-332 (503)
167 PLN03215 ascorbic acid mannose 76.3 43 0.00093 31.7 11.3 24 84-109 204-227 (373)
168 PHA02713 hypothetical protein; 76.3 21 0.00046 35.3 9.9 78 151-249 458-543 (557)
169 PTZ00420 coronin; Provisional 75.9 90 0.002 31.2 17.2 73 80-179 126-200 (568)
170 KOG0299 U3 snoRNP-associated p 75.2 23 0.00049 34.2 9.1 67 84-175 207-273 (479)
171 KOG0286 G-protein beta subunit 74.9 69 0.0015 29.4 11.8 81 147-234 230-312 (343)
172 KOG0296 Angio-associated migra 74.9 76 0.0016 29.9 12.9 114 83-244 110-225 (399)
173 PLN00181 protein SPA1-RELATED; 74.6 1.1E+02 0.0023 31.5 15.8 73 82-179 535-609 (793)
174 KOG2110 Uncharacterized conser 73.9 19 0.00041 33.8 8.1 67 84-175 178-249 (391)
175 PHA03098 kelch-like protein; P 73.1 88 0.0019 30.4 13.2 75 158-248 437-520 (534)
176 KOG1274 WD40 repeat protein [G 72.9 81 0.0017 33.1 12.9 29 81-109 15-43 (933)
177 KOG0973 Histone transcription 72.9 37 0.0008 35.8 10.7 131 83-239 133-276 (942)
178 KOG2048 WD40 repeat protein [G 72.3 43 0.00093 33.8 10.6 125 86-250 389-516 (691)
179 KOG2106 Uncharacterized conser 72.1 42 0.00091 33.0 10.2 64 150-213 204-267 (626)
180 PF14870 PSII_BNR: Photosynthe 72.1 80 0.0017 28.9 12.4 35 148-184 188-222 (302)
181 PRK12689 flgF flagellar basal 71.6 28 0.0006 31.0 8.5 62 146-210 81-155 (253)
182 KOG1446 Histone H3 (Lys4) meth 71.1 85 0.0018 28.8 13.9 110 74-213 95-209 (311)
183 TIGR02608 delta_60_rpt delta-6 71.0 7.8 0.00017 26.3 3.8 38 195-243 3-40 (55)
184 PRK12690 flgF flagellar basal 71.0 21 0.00046 31.5 7.6 61 146-208 75-148 (238)
185 COG0823 TolB Periplasmic compo 70.6 90 0.002 29.9 12.3 37 170-211 308-344 (425)
186 PRK12641 flgF flagellar basal 70.3 36 0.00079 30.2 9.0 60 146-209 72-144 (252)
187 PRK12636 flgG flagellar basal 70.2 17 0.00036 32.5 6.9 63 146-210 88-163 (263)
188 KOG1963 WD40 repeat protein [G 70.1 56 0.0012 33.8 11.1 100 84-211 256-366 (792)
189 PF02333 Phytase: Phytase; In 69.7 43 0.00092 31.8 9.7 30 80-109 208-237 (381)
190 KOG0271 Notchless-like WD40 re 69.5 66 0.0014 30.7 10.6 43 68-111 236-278 (480)
191 KOG1445 Tumor-specific antigen 69.5 30 0.00065 35.0 8.8 36 76-111 717-752 (1012)
192 TIGR03118 PEPCTERM_chp_1 conse 69.2 59 0.0013 30.1 10.1 66 146-212 243-323 (336)
193 KOG2048 WD40 repeat protein [G 68.9 1.4E+02 0.003 30.4 13.2 70 144-214 152-226 (691)
194 KOG1539 WD repeat protein [Gen 67.2 35 0.00076 35.3 8.9 97 83-209 497-593 (910)
195 KOG0271 Notchless-like WD40 re 66.8 92 0.002 29.7 11.0 79 83-189 119-198 (480)
196 KOG4441 Proteins containing BT 66.3 1.1E+02 0.0024 30.5 12.3 85 150-253 469-559 (571)
197 KOG2055 WD40 repeat protein [G 65.5 1.1E+02 0.0025 29.7 11.5 61 145-209 343-404 (514)
198 KOG0289 mRNA splicing factor [ 64.9 1.4E+02 0.003 28.9 12.1 110 74-212 256-367 (506)
199 KOG0282 mRNA splicing factor [ 64.8 15 0.00033 35.5 5.7 106 76-211 255-361 (503)
200 KOG0772 Uncharacterized conser 64.3 1.3E+02 0.0027 29.9 11.7 77 82-179 170-247 (641)
201 KOG1009 Chromatin assembly com 64.2 1.1E+02 0.0023 29.3 11.0 156 83-257 69-244 (434)
202 KOG0275 Conserved WD40 repeat- 63.7 19 0.00042 33.4 5.9 101 83-212 267-368 (508)
203 KOG2321 WD40 repeat protein [G 62.7 90 0.0019 31.3 10.5 31 83-113 137-167 (703)
204 PF13964 Kelch_6: Kelch motif 62.5 20 0.00044 22.8 4.4 38 199-247 7-44 (50)
205 COG3490 Uncharacterized protei 61.9 52 0.0011 30.3 8.2 41 170-212 93-134 (366)
206 PF14870 PSII_BNR: Photosynthe 61.3 1.3E+02 0.0029 27.5 13.1 130 84-245 66-211 (302)
207 KOG4378 Nuclear protein COP1 [ 61.3 1.1E+02 0.0023 30.3 10.6 68 150-240 212-281 (673)
208 PHA03098 kelch-like protein; P 61.2 1.6E+02 0.0035 28.5 13.3 75 158-247 342-422 (534)
209 PRK12694 flgG flagellar basal 60.3 44 0.00094 29.8 7.6 58 146-209 89-160 (260)
210 KOG0293 WD40 repeat-containing 59.9 1.7E+02 0.0037 28.3 11.8 92 149-245 315-421 (519)
211 PRK12818 flgG flagellar basal 59.5 27 0.00059 31.0 6.1 18 191-208 148-166 (256)
212 KOG2321 WD40 repeat protein [G 58.6 1.3E+02 0.0029 30.2 10.8 112 83-212 179-294 (703)
213 KOG0263 Transcription initiati 58.5 49 0.0011 33.7 8.2 79 71-175 569-648 (707)
214 KOG0286 G-protein beta subunit 57.9 1.6E+02 0.0034 27.2 14.4 110 70-212 136-249 (343)
215 PF02897 Peptidase_S9_N: Proly 57.9 1.6E+02 0.0035 27.3 12.8 77 151-247 331-412 (414)
216 PF05935 Arylsulfotrans: Aryls 57.5 1.5E+02 0.0032 28.8 11.3 56 152-211 153-208 (477)
217 PF08309 LVIVD: LVIVD repeat; 57.3 35 0.00076 21.6 4.7 28 148-177 3-30 (42)
218 KOG0640 mRNA cleavage stimulat 57.2 86 0.0019 29.2 8.8 104 84-213 177-282 (430)
219 KOG0640 mRNA cleavage stimulat 55.9 67 0.0015 29.8 7.9 28 83-110 265-292 (430)
220 PHA02790 Kelch-like protein; P 55.9 2E+02 0.0043 27.8 12.5 71 158-246 407-477 (480)
221 PRK12640 flgF flagellar basal 54.7 73 0.0016 28.2 8.0 61 146-209 74-147 (246)
222 KOG1273 WD40 repeat protein [G 54.0 1.1E+02 0.0023 28.6 8.9 127 82-241 156-292 (405)
223 KOG0643 Translation initiation 53.3 1.8E+02 0.0039 26.5 13.5 24 85-108 16-39 (327)
224 KOG0278 Serine/threonine kinas 52.1 66 0.0014 29.0 7.1 66 86-176 231-299 (334)
225 TIGR03548 mutarot_permut cycli 51.9 1.1E+02 0.0024 27.5 9.0 77 159-247 73-155 (323)
226 PF14157 YmzC: YmzC-like prote 51.9 17 0.00036 25.4 2.6 16 232-247 42-57 (63)
227 KOG0641 WD40 repeat protein [G 51.8 1.8E+02 0.0038 26.0 9.7 31 81-111 233-263 (350)
228 PF01011 PQQ: PQQ enzyme repea 51.2 22 0.00048 21.6 3.0 17 228-244 7-23 (38)
229 PF11768 DUF3312: Protein of u 50.5 2.1E+02 0.0045 28.6 10.8 81 67-175 247-328 (545)
230 KOG0275 Conserved WD40 repeat- 50.0 2.2E+02 0.0048 26.7 13.9 121 81-245 350-473 (508)
231 KOG1539 WD repeat protein [Gen 49.5 3.3E+02 0.0073 28.5 12.5 110 80-213 449-565 (910)
232 COG4787 FlgF Flagellar basal b 49.2 81 0.0017 27.7 7.0 67 144-212 72-149 (251)
233 PRK12817 flgG flagellar basal 49.0 74 0.0016 28.3 7.1 20 191-210 146-166 (260)
234 KOG2055 WD40 repeat protein [G 48.3 1.1E+02 0.0023 29.9 8.3 29 83-111 348-376 (514)
235 KOG0292 Vesicle coat complex C 48.1 2.1E+02 0.0046 30.4 10.8 67 80-173 251-318 (1202)
236 PF05935 Arylsulfotrans: Aryls 48.0 2E+02 0.0043 27.9 10.5 37 149-185 273-310 (477)
237 KOG0641 WD40 repeat protein [G 47.6 2.1E+02 0.0045 25.6 13.8 28 83-110 93-122 (350)
238 smart00320 WD40 WD40 repeats. 47.5 41 0.00088 17.6 3.7 25 82-106 15-39 (40)
239 KOG0313 Microtubule binding pr 47.4 2.6E+02 0.0056 26.6 12.5 102 73-204 254-357 (423)
240 PF14517 Tachylectin: Tachylec 46.9 54 0.0012 28.9 5.7 126 66-213 21-150 (229)
241 PRK12643 flgF flagellar basal 46.7 82 0.0018 27.3 6.8 60 146-209 74-146 (209)
242 KOG4328 WD40 protein [Function 46.0 1.6E+02 0.0035 28.6 9.1 105 83-211 190-299 (498)
243 KOG0268 Sof1-like rRNA process 46.0 1.6E+02 0.0035 27.9 8.9 70 79-174 66-137 (433)
244 COG3168 PilP Tfp pilus assembl 45.2 1.4E+02 0.0029 24.9 7.4 18 94-111 127-144 (170)
245 smart00284 OLF Olfactomedin-li 45.0 2.3E+02 0.005 25.3 11.5 28 84-111 132-163 (255)
246 KOG1408 WD40 repeat protein [F 44.7 1.5E+02 0.0033 30.7 9.0 99 83-208 600-709 (1080)
247 COG4993 Gcd Glucose dehydrogen 44.2 89 0.0019 31.7 7.3 79 158-244 214-295 (773)
248 PF14339 DUF4394: Domain of un 43.6 2.3E+02 0.005 25.0 10.1 76 84-179 31-106 (236)
249 TIGR03506 FlgEFG_subfam fagell 43.5 97 0.0021 26.9 6.9 20 190-209 127-149 (231)
250 PF13570 PQQ_3: PQQ-like domai 43.1 43 0.00093 20.3 3.4 24 84-109 16-39 (40)
251 PF00397 WW: WW domain; Inter 42.8 28 0.00061 20.3 2.4 15 230-244 13-27 (31)
252 PF00930 DPPIV_N: Dipeptidyl p 42.7 92 0.002 28.6 7.0 53 152-210 286-345 (353)
253 KOG1063 RNA polymerase II elon 42.4 3.8E+02 0.0082 27.6 11.3 105 84-212 272-381 (764)
254 PF10647 Gmad1: Lipoprotein Lp 42.3 2.4E+02 0.0051 24.7 10.5 95 80-205 24-124 (253)
255 PRK12819 flgG flagellar basal 42.1 1.5E+02 0.0031 26.4 7.9 63 146-209 83-161 (257)
256 PF14220 DUF4329: Domain of un 42.0 6.6 0.00014 31.2 -0.6 18 227-244 98-115 (123)
257 PLN00033 photosystem II stabil 41.8 3.1E+02 0.0068 26.0 11.8 25 149-174 283-307 (398)
258 KOG1963 WD40 repeat protein [G 41.0 3.8E+02 0.0082 28.0 11.3 103 83-212 209-312 (792)
259 KOG0315 G-protein beta subunit 40.6 2.8E+02 0.0061 25.1 12.5 108 82-213 170-279 (311)
260 KOG3914 WD repeat protein WDR4 40.6 1.9E+02 0.0041 27.5 8.5 92 146-242 107-226 (390)
261 TIGR03548 mutarot_permut cycli 40.5 2.7E+02 0.0059 24.9 11.7 17 231-247 271-287 (323)
262 KOG0316 Conserved WD40 repeat- 40.4 2.6E+02 0.0057 25.1 8.9 111 85-243 149-261 (307)
263 PRK12692 flgG flagellar basal 39.8 1.5E+02 0.0033 26.3 7.7 58 146-209 89-160 (262)
264 KOG0279 G protein beta subunit 39.8 3E+02 0.0065 25.2 14.9 116 68-212 52-169 (315)
265 KOG3567 Peptidylglycine alpha- 39.7 23 0.0005 34.3 2.5 27 188-214 462-488 (501)
266 PF05567 Neisseria_PilC: Neiss 39.7 68 0.0015 29.7 5.6 53 169-239 182-239 (335)
267 PRK12816 flgG flagellar basal 39.2 65 0.0014 28.8 5.2 58 146-209 89-162 (264)
268 PRK13684 Ycf48-like protein; P 38.5 3.1E+02 0.0068 25.0 11.6 25 147-173 173-197 (334)
269 KOG0645 WD40 repeat protein [G 38.3 3.1E+02 0.0068 25.0 13.6 103 76-204 98-207 (312)
270 TIGR02488 flgG_G_neg flagellar 37.5 78 0.0017 28.1 5.4 58 146-209 87-158 (259)
271 KOG0288 WD40 repeat protein Ti 37.5 3.9E+02 0.0084 25.8 13.3 89 146-252 341-430 (459)
272 PF00930 DPPIV_N: Dipeptidyl p 37.3 3.1E+02 0.0067 25.0 9.7 82 151-249 188-278 (353)
273 PHA02790 Kelch-like protein; P 36.5 4E+02 0.0087 25.7 12.6 49 158-210 362-414 (480)
274 KOG0647 mRNA export protein (c 35.4 2.5E+02 0.0054 26.0 8.2 79 84-185 32-111 (347)
275 KOG0284 Polyadenylation factor 35.2 1.3E+02 0.0028 28.9 6.6 80 71-176 214-294 (464)
276 KOG1009 Chromatin assembly com 34.8 2.6E+02 0.0056 26.8 8.5 91 149-258 68-173 (434)
277 PRK12642 flgF flagellar basal 34.6 1E+02 0.0022 27.1 5.6 61 146-208 73-146 (241)
278 COG4247 Phy 3-phytase (myo-ino 34.6 1.6E+02 0.0034 26.9 6.7 41 149-189 207-249 (364)
279 PF02393 US22: US22 like; Int 34.1 37 0.00081 26.0 2.6 24 228-251 88-111 (125)
280 KOG0285 Pleiotropic regulator 33.8 4.3E+02 0.0092 25.2 10.7 102 81-212 153-255 (460)
281 KOG0284 Polyadenylation factor 33.6 1.9E+02 0.0041 27.8 7.4 79 68-173 84-164 (464)
282 KOG0649 WD40 repeat protein [G 33.0 3.7E+02 0.0081 24.3 8.9 34 150-183 118-151 (325)
283 KOG1036 Mitotic spindle checkp 32.7 2.2E+02 0.0048 26.3 7.5 75 150-247 17-91 (323)
284 KOG0283 WD40 repeat-containing 32.3 1.5E+02 0.0031 30.6 6.9 64 83-173 413-477 (712)
285 PRK12691 flgG flagellar basal 32.0 1.7E+02 0.0037 25.9 6.7 13 197-209 148-160 (262)
286 PF12894 Apc4_WD40: Anaphase-p 31.7 1.4E+02 0.0031 19.2 4.6 28 83-110 15-42 (47)
287 KOG0646 WD40 repeat protein [G 31.5 4E+02 0.0086 26.0 9.2 109 84-211 128-237 (476)
288 KOG1354 Serine/threonine prote 30.8 63 0.0014 30.4 3.7 29 82-110 28-56 (433)
289 PF14298 DUF4374: Domain of un 30.8 5E+02 0.011 25.1 12.4 60 170-244 369-429 (435)
290 KOG2394 WD40 protein DMR-N9 [G 29.8 3.4E+02 0.0074 27.1 8.6 92 81-202 292-384 (636)
291 COG4993 Gcd Glucose dehydrogen 29.5 6.4E+02 0.014 25.9 12.6 45 67-111 183-234 (773)
292 KOG0319 WD40-repeat-containing 29.1 6.7E+02 0.014 26.0 11.6 115 84-243 67-183 (775)
293 cd00819 PEPCK_GTP Phosphoenolp 29.1 49 0.0011 33.0 2.9 60 151-213 278-339 (579)
294 KOG0308 Conserved WD40 repeat- 28.9 6.5E+02 0.014 25.8 12.4 137 83-240 121-286 (735)
295 KOG1036 Mitotic spindle checkp 28.1 4.8E+02 0.011 24.1 11.8 74 84-185 18-92 (323)
296 KOG2103 Uncharacterized conser 27.8 5.3E+02 0.012 27.1 9.9 45 201-245 485-532 (910)
297 PRK12693 flgG flagellar basal 27.6 1.2E+02 0.0027 26.8 5.0 58 146-209 89-160 (261)
298 KOG2096 WD40 repeat protein [G 27.1 5.3E+02 0.012 24.2 9.1 128 65-211 262-392 (420)
299 COG5134 Uncharacterized conser 26.9 66 0.0014 28.1 3.0 31 144-176 83-113 (272)
300 KOG2919 Guanine nucleotide-bin 26.9 5.4E+02 0.012 24.2 10.3 33 75-108 154-186 (406)
301 KOG0973 Histone transcription 26.3 8.3E+02 0.018 26.2 11.3 117 80-213 70-192 (942)
302 PRK04210 phosphoenolpyruvate c 25.8 65 0.0014 32.3 3.1 61 151-213 293-355 (601)
303 KOG1445 Tumor-specific antigen 25.7 6.6E+02 0.014 25.9 9.9 60 146-208 720-780 (1012)
304 KOG0292 Vesicle coat complex C 25.7 8.6E+02 0.019 26.2 13.3 80 71-176 198-280 (1202)
305 COG4222 Uncharacterized protei 25.6 2.9E+02 0.0063 26.3 7.3 37 72-108 61-97 (391)
306 smart00456 WW Domain with 2 co 25.4 85 0.0018 17.9 2.5 15 230-244 12-26 (32)
307 PF03178 CPSF_A: CPSF A subuni 25.0 5E+02 0.011 23.2 11.9 59 149-212 132-193 (321)
308 PF15416 DUF4623: Domain of un 24.9 3.7E+02 0.0081 25.4 7.6 64 149-213 185-262 (442)
309 KOG3881 Uncharacterized conser 24.6 3.2E+02 0.007 26.1 7.2 68 84-177 252-321 (412)
310 KOG1538 Uncharacterized conser 24.3 3.2E+02 0.0069 28.3 7.5 60 149-214 15-75 (1081)
311 PTZ00486 apyrase Superfamily; 24.3 5.1E+02 0.011 24.3 8.5 58 158-215 124-185 (352)
312 KOG0647 mRNA export protein (c 24.1 4.1E+02 0.0088 24.7 7.6 55 151-210 32-90 (347)
313 PF07172 GRP: Glycine rich pro 23.7 48 0.001 25.0 1.4 16 15-30 4-19 (95)
314 cd00201 WW Two conserved trypt 23.2 98 0.0021 17.3 2.5 15 230-244 11-25 (31)
315 KOG0645 WD40 repeat protein [G 23.2 5.8E+02 0.013 23.3 15.1 113 76-214 11-127 (312)
316 KOG1645 RING-finger-containing 22.4 1E+02 0.0023 29.5 3.6 32 79-110 235-267 (463)
317 PF08553 VID27: VID27 cytoplas 21.8 2.9E+02 0.0063 28.9 7.0 63 84-174 582-645 (794)
318 KOG4227 WD40 repeat protein [G 21.7 3.8E+02 0.0083 25.8 7.1 28 84-111 110-137 (609)
319 PF06079 Apyrase: Apyrase; In 21.6 2.5E+02 0.0054 25.7 5.8 58 158-215 63-122 (291)
320 KOG0307 Vesicle coat complex C 21.4 2.4E+02 0.0052 30.3 6.3 135 84-243 121-288 (1049)
321 KOG4640 Anaphase-promoting com 21.1 1.3E+02 0.0029 30.3 4.2 29 83-111 66-94 (665)
322 KOG0273 Beta-transducin family 21.1 8E+02 0.017 24.1 12.0 100 79-212 275-379 (524)
323 PF11763 DIPSY: Cell-wall adhe 21.1 4.2E+02 0.0091 20.9 7.0 23 192-214 81-103 (123)
324 KOG0265 U5 snRNP-specific prot 20.9 6.4E+02 0.014 23.4 8.2 67 144-214 45-112 (338)
325 PF01344 Kelch_1: Kelch motif; 20.2 2.1E+02 0.0045 17.4 3.8 37 199-246 7-43 (47)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=2.8e-44 Score=327.22 Aligned_cols=221 Identities=43% Similarity=0.756 Sum_probs=177.4
Q ss_pred eeehHHHHHHHHHHHHhcCCCCCCCCCCcccceecccCCCccccccCCCCCCCcccCCCeEEccCCCCCceeEEEcCCCC
Q 039124 13 LQHPFLFVLALVLGFLIMDPLQMGPLGGHEFRPVKHDIAPYRQVMQSWPRDNLSRLVTGKLEFVDEVFGPESLEFDGLGR 92 (259)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~n~~L~~~e~l~~~~l~gPE~ia~D~~G~ 92 (259)
.++.++++.+.+++++.++++..+.+...+..+.. . +..+.++.+..+.+.|||++++|+.|.
T Consensus 4 ~~~~~~~i~~~~~~~~~l~~l~~~~~~~~~~~~~~--~---------------~~~~~~~l~~~~~~~g~E~~~fd~~~~ 66 (376)
T KOG1520|consen 4 SRFLFLFIFLFLAVIILLYLLSGSSIAGSPDDRLF--S---------------KLPLLGKLIPNNHLTGPESLLFDPQGG 66 (376)
T ss_pred chhhhHHHHHHHHHHHhhhccCcccccCCchhccc--C---------------CCCcccccccccccCChhhheecccCC
Confidence 34566778888888888888777765533221110 0 112233444555567777777777776
Q ss_pred EEEEEcCCCeEEEEeCCCccEEEEEEe--ecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeCCCce
Q 039124 93 GPYTGLADGRIVRWMGENVGWETFAIV--TSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 93 ~~yt~~~~G~I~ri~~~~~~~~~fa~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~Gl 170 (259)
..|++..+|+|++|.+...+|..|+.+ +.+++. .|+ + ..+..++.||||+||||+.++|+|||||||+||
T Consensus 67 gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~-~~~-~------~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL 138 (376)
T KOG1520|consen 67 GPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQ-CCD-P------GSFETEPLCGRPLGIRFDKKGGDLYVADAYLGL 138 (376)
T ss_pred CceEEEECCceEEEeccCceEEEEEeccccccccc-cCC-C------cceecccccCCcceEEeccCCCeEEEEecceee
Confidence 677777777777777765557777776 555543 333 1 236778999999999999986799999999999
Q ss_pred EEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecCCC
Q 039124 171 LVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWL 250 (259)
Q Consensus 171 ~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L 250 (259)
++|++++++.+.++++++|+|++|.||++|+++|.|||||||++|+++|++.+++|++++|||+||||.|++++||+++|
T Consensus 139 ~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L 218 (376)
T KOG1520|consen 139 LKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGL 218 (376)
T ss_pred EEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEE
Q 039124 251 GFSKWSTI 258 (259)
Q Consensus 251 ~~pNGval 258 (259)
+||||+++
T Consensus 219 ~F~NGlaL 226 (376)
T KOG1520|consen 219 YFPNGLAL 226 (376)
T ss_pred cccccccC
Confidence 99999986
No 2
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.84 E-value=9.8e-22 Score=147.30 Aligned_cols=63 Identities=49% Similarity=0.831 Sum_probs=52.2
Q ss_pred ccEEEcCC-CcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 196 NDLDVHKN-GSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 196 Ndl~vd~d-G~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
|||+|+++ |.|||||+|++|++++|+++++|++++|||++|||+||++++|+++|+|||||++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVal 64 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVAL 64 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEE
Confidence 89999999 9999999999999999999999999999999999999999999999999999997
No 3
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.83 E-value=1.4e-19 Score=158.66 Aligned_cols=138 Identities=29% Similarity=0.422 Sum_probs=110.4
Q ss_pred ceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 82 PESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 82 PE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
||+++||+ +|++||+++.+++|+|+++++.....+ . ...|.|++++..+|.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~------------------------~----~~~~~G~~~~~~~g~ 53 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI------------------------D----LPGPNGMAFDRPDGR 53 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE------------------------E----SSSEEEEEEECTTSE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE------------------------e----cCCCceEEEEccCCE
Confidence 89999997 899999999999999999987632111 1 122999999932599
Q ss_pred EEEEeCCCceEEEECCCCeEEEeeecCCCC-CccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 161 LYIADAYYGLLVVGSKGGLATPLATQAGGK-PILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 161 L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~-pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
||||+. .++..+|+++++.+.++....+. ++.+|||+++|++|+|||||+...... ....|+|||++++
T Consensus 54 l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 54 LYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD 123 (246)
T ss_dssp EEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT
T ss_pred EEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC
Confidence 999986 56777799999988888765454 899999999999999999999753211 1111999999999
Q ss_pred CCcEEEecCCCCCcceeEE
Q 039124 240 TKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 240 tg~~~vl~~~L~~pNGval 258 (259)
++++++.+++.+||||+|
T Consensus 124 -~~~~~~~~~~~~pNGi~~ 141 (246)
T PF08450_consen 124 -GKVTVVADGLGFPNGIAF 141 (246)
T ss_dssp -SEEEEEEEEESSEEEEEE
T ss_pred -CeEEEEecCcccccceEE
Confidence 999999999999999997
No 4
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=2e-17 Score=150.63 Aligned_cols=146 Identities=23% Similarity=0.199 Sum_probs=109.5
Q ss_pred CCCCCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 77 DEVFGPESLEFDGLG-RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G-~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
-+..-.|+++|+++. .++|+++.+++|+|+++..+....|. ...+.+.|+.++
T Consensus 22 ~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~--------------------------~p~~~~~~~~~d 75 (307)
T COG3386 22 KGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP--------------------------SPGGFSSGALID 75 (307)
T ss_pred cccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE--------------------------CCCCcccceeec
Confidence 345567778888854 58999999999999999754333331 223447889999
Q ss_pred CCCCcEEEEeCCCceEEEECCCCeE-EEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 156 KDTGDLYIADAYYGLLVVGSKGGLA-TPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 156 ~~~G~L~VaD~~~Gl~~v~~~gg~~-~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
. .|.|++|+.. ++.++++.+.. +.++...++.+.+++||+.++++|++||||+++ +. ...-+.++.|+||
T Consensus 76 ~-~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~ly 146 (307)
T COG3386 76 A-GGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLY 146 (307)
T ss_pred C-CCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEE
Confidence 8 4899888754 55555454444 778877889999999999999999999999984 11 2233568899999
Q ss_pred EEeCCCCcEEEecCC-CCCcceeEE
Q 039124 235 RYDPPTKSNSYCVRW-LGFSKWSTI 258 (259)
Q Consensus 235 rydp~tg~~~vl~~~-L~~pNGval 258 (259)
||||. +.++.++.+ +.+||||||
T Consensus 147 r~~p~-g~~~~l~~~~~~~~NGla~ 170 (307)
T COG3386 147 RVDPD-GGVVRLLDDDLTIPNGLAF 170 (307)
T ss_pred EEcCC-CCEEEeecCcEEecCceEE
Confidence 99997 555555555 999999997
No 5
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.49 E-value=1.2e-12 Score=122.08 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=108.2
Q ss_pred eEEcc-CCCCCceeEEEcCCCCEEEEEc-----------CCC-eEEEEeCC---CccEEEEEEeecCccccccccCcccc
Q 039124 72 KLEFV-DEVFGPESLEFDGLGRGPYTGL-----------ADG-RIVRWMGE---NVGWETFAIVTSNWSEKLCARGVDST 135 (259)
Q Consensus 72 e~l~~-~~l~gPE~ia~D~~G~~~yt~~-----------~~G-~I~ri~~~---~~~~~~fa~~~~~~~~~~~~g~~~~~ 135 (259)
+++.. ..+..|.+++||++|++|++.. ..+ +|++++.. +. ....
T Consensus 5 ~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~-~d~~------------------- 64 (367)
T TIGR02604 5 TLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK-YDKS------------------- 64 (367)
T ss_pred EEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC-ccee-------------------
Confidence 34443 3689999999999999655553 234 89888652 22 1000
Q ss_pred ccccccccCcCCCcceEEEeCCCCcEEEEeCCCceEEE-ECCC-----CeEEEeeecCCCC---CccccccEEEcCCCcE
Q 039124 136 TAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGLLVV-GSKG-----GLATPLATQAGGK---PILFANDLDVHKNGSI 206 (259)
Q Consensus 136 ~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~Gl~~v-~~~g-----g~~~~l~~~~~g~---pl~~~Ndl~vd~dG~I 206 (259)
..+......|.||++.+ +| |||++.. .|+++ +.++ ++.+.+++..... +...+|++++++||.|
T Consensus 65 ----~vfa~~l~~p~Gi~~~~-~G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L 137 (367)
T TIGR02604 65 ----NVFAEELSMVTGLAVAV-GG-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL 137 (367)
T ss_pred ----EEeecCCCCccceeEec-CC-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE
Confidence 01123356799999998 47 9999754 58878 4332 2456677655443 4677999999999999
Q ss_pred EEecCCCCC--CcccceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 207 FFTDTSKRY--NRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 207 yfTDss~~~--~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
||++.+... ..........+....|+++||||++++.++++.++..|||+++
T Consensus 138 Yv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~ 191 (367)
T TIGR02604 138 YFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSV 191 (367)
T ss_pred EEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceE
Confidence 999986421 1111111112234568999999999999999999999999987
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.33 E-value=5.2e-11 Score=104.33 Aligned_cols=134 Identities=20% Similarity=0.268 Sum_probs=90.1
Q ss_pred CCCCceeEEEcCCCCEEEEEcCC--------CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 78 EVFGPESLEFDGLGRGPYTGLAD--------GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~--------G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
...+|.++++|++|++|+++... |+|+|+++++. .... ......|
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~--------------------------~~~~~~p 136 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVV--------------------------ADGLGFP 136 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEE--------------------------EEEESSE
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCe-EEEE--------------------------ecCcccc
Confidence 58899999999999977777643 78999999843 2211 1124679
Q ss_pred ceEEEeCCCCcEEEEeCCCc-eEEEECC--CCeE---EEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceee
Q 039124 150 LGLRFNKDTGDLYIADAYYG-LLVVGSK--GGLA---TPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFI 223 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~G-l~~v~~~--gg~~---~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~ 223 (259)
+||+|++++..|||+|+..+ |++++.+ ++++ +.+.. ..+. ..+|+++++|++|+||+++..
T Consensus 137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-~g~pDG~~vD~~G~l~va~~~----------- 203 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-FPGG-PGYPDGLAVDSDGNLWVADWG----------- 203 (246)
T ss_dssp EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSS-SCEEEEEEEBTTS-EEEEEET-----------
T ss_pred cceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-cCCC-CcCCCcceEcCCCCEEEEEcC-----------
Confidence 99999996336899999876 8888764 4422 23332 2222 247999999999999999854
Q ss_pred eeccCCCceEEEEeCCCCcEE-EecCCCCCcceeEE
Q 039124 224 LLEGESTGRLLRYDPPTKSNS-YCVRWLGFSKWSTI 258 (259)
Q Consensus 224 ~~e~~~~GrL~rydp~tg~~~-vl~~~L~~pNGval 258 (259)
.|++++|||+ |+.. .+.-....|..+||
T Consensus 204 ------~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 204 ------GGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp ------TTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ------CCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 4699999998 6643 34333445555554
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=3.5e-10 Score=118.17 Aligned_cols=153 Identities=16% Similarity=0.096 Sum_probs=105.0
Q ss_pred cCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEe-ecCccccccccCccccccccccccCcCCCcceEE
Q 039124 76 VDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIV-TSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 76 ~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
...+..|.++++|+ +|++|+++..+++|++++.++. ...+... .... .-+|. ..+..+.+|.||+
T Consensus 564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G---~~dG~---------~~~a~f~~P~GIa 630 (1057)
T PLN02919 564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEG---LRDGS---------FEDATFNRPQGLA 630 (1057)
T ss_pred cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcC---CCCCc---------hhccccCCCcEEE
Confidence 34689999999998 5777788889999999999876 3322211 1000 00111 1134578899999
Q ss_pred EeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeec------CCC------CCccccccEEEcC-CCcEEEecCCCCCCccc
Q 039124 154 FNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQ------AGG------KPILFANDLDVHK-NGSIFFTDTSKRYNRVD 219 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~------~~g------~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~ 219 (259)
++++++.|||||.+++ |.++|..++.+++++.. .+| ..++.|.++++++ +|++|++|+..
T Consensus 631 vd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~------ 704 (1057)
T PLN02919 631 YNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ------ 704 (1057)
T ss_pred EeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC------
Confidence 9985445899999876 77889998888777542 111 2378899999999 78899999864
Q ss_pred ceeeeeccCCCceEEEEeCCCCcEEEec---------------CCCCCcceeEE
Q 039124 220 HFFILLEGESTGRLLRYDPPTKSNSYCV---------------RWLGFSKWSTI 258 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~~~vl~---------------~~L~~pNGval 258 (259)
+++++||+.++.+.++. ..+..|+||++
T Consensus 705 -----------~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav 747 (1057)
T PLN02919 705 -----------HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISL 747 (1057)
T ss_pred -----------CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEE
Confidence 35666776665554432 13567888875
No 8
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.14 E-value=2.6e-09 Score=111.68 Aligned_cols=152 Identities=17% Similarity=0.144 Sum_probs=102.7
Q ss_pred CCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
+..|.++++|+ +|.+|+++..+++|++++..+.....|+..... . ...+. .........|.||+++++
T Consensus 682 ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~--~-~~~g~--------~~~~~~~~~P~GIavspd 750 (1057)
T PLN02919 682 LNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE--R-NLNGS--------SGTSTSFAQPSGISLSPD 750 (1057)
T ss_pred cCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc--c-cCCCC--------ccccccccCccEEEEeCC
Confidence 56899999999 667666777889999999876544444321100 0 00000 011234567999999996
Q ss_pred CCcEEEEeCCCc-eEEEECCCCeEEEeeec-------------CCC----CCccccccEEEcCCCcEEEecCCCCCCccc
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGLATPLATQ-------------AGG----KPILFANDLDVHKNGSIFFTDTSKRYNRVD 219 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~-------------~~g----~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~ 219 (259)
++.|||||...+ |.++|.+++..+.++.. .+| ..+..|.+++++++|+||++|+.+
T Consensus 751 G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------ 824 (1057)
T PLN02919 751 LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------ 824 (1057)
T ss_pred CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------
Confidence 334999999865 88899887655444321 011 236689999999999999999753
Q ss_pred ceeeeeccCCCceEEEEeCCCCcEEEecC--------------CCCCcceeEE
Q 039124 220 HFFILLEGESTGRLLRYDPPTKSNSYCVR--------------WLGFSKWSTI 258 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~~~vl~~--------------~L~~pNGval 258 (259)
+++.+||++++++..++. .+..|+||++
T Consensus 825 -----------~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 825 -----------HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred -----------CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE
Confidence 488889988887765542 3457888875
No 9
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.09 E-value=2.4e-09 Score=94.92 Aligned_cols=119 Identities=17% Similarity=0.075 Sum_probs=92.7
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
....-...-.+|..++.++||.++|++...|.|-++++..+..+++. -..+.+|.
T Consensus 53 ~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp-------------------------Lg~Ga~Ph 107 (353)
T COG4257 53 SAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP-------------------------LGSGASPH 107 (353)
T ss_pred cceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEe-------------------------cCCCCCCc
Confidence 34444556789999999999999999999999999999876443321 13367899
Q ss_pred eEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCC
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYN 216 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~ 216 (259)
|+.++++ |..||+|...+|.++|+++.+++.+--..+- +-.-.|-..+|++|++|||..+..|.
T Consensus 108 giv~gpd-g~~Witd~~~aI~R~dpkt~evt~f~lp~~~-a~~nlet~vfD~~G~lWFt~q~G~yG 171 (353)
T COG4257 108 GIVVGPD-GSAWITDTGLAIGRLDPKTLEVTRFPLPLEH-ADANLETAVFDPWGNLWFTGQIGAYG 171 (353)
T ss_pred eEEECCC-CCeeEecCcceeEEecCcccceEEeeccccc-CCCcccceeeCCCccEEEeeccccce
Confidence 9999994 9999999999999999998887766422111 12246889999999999999876554
No 10
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.77 E-value=1.3e-07 Score=87.28 Aligned_cols=209 Identities=18% Similarity=0.165 Sum_probs=127.3
Q ss_pred ehHHHHHHHHHHHHhcCCCCCCCCCCc-ccceecccCCCccccccCCCCCCCcccCCCeEEccCCCCCceeEEEcCCCCE
Q 039124 15 HPFLFVLALVLGFLIMDPLQMGPLGGH-EFRPVKHDIAPYRQVMQSWPRDNLSRLVTGKLEFVDEVFGPESLEFDGLGRG 93 (259)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~n~~L~~~e~l~~~~l~gPE~ia~D~~G~~ 93 (259)
...+..+++.++++.+++..+.+.... .+++.... +.+.+|+.++.+|.+..+....||++.+..+..+
T Consensus 9 ~~i~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il 78 (376)
T KOG1520|consen 9 LFIFLFLAVIILLYLLSGSSIAGSPDDRLFSKLPLL----------GKLIPNNHLTGPESLLFDPQGGGPYTGVVDGRIL 78 (376)
T ss_pred HHHHHHHHHHHhhhccCcccccCCchhcccCCCCcc----------cccccccccCChhhheecccCCCceEEEECCceE
Confidence 345556666666666666666555434 35555432 4567889888888888887776666666434446
Q ss_pred EEEEcCCCeEEEEeCCCccEE-EEEEeecCccccccccCcc-------------------------ccccccccccCcCC
Q 039124 94 PYTGLADGRIVRWMGENVGWE-TFAIVTSNWSEKLCARGVD-------------------------STTAKQWKHEKWCG 147 (259)
Q Consensus 94 ~yt~~~~G~I~ri~~~~~~~~-~fa~~~~~~~~~~~~g~~~-------------------------~~~~~~~~~~~~~g 147 (259)
+|++..+|+|.+.+....... .-.-+.....++.|.-|.. .-.+... ..+..|
T Consensus 79 ~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l-~~~~~G 157 (376)
T KOG1520|consen 79 KYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELL-ADEAEG 157 (376)
T ss_pred EEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceec-cccccC
Confidence 899999999998876211000 0000000001223431000 0000001 123455
Q ss_pred Cc----ceEEEeCCCCcEEEEeCCC-----------------c-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc
Q 039124 148 RP----LGLRFNKDTGDLYIADAYY-----------------G-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS 205 (259)
Q Consensus 148 rP----lGl~~d~~~G~L~VaD~~~-----------------G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~ 205 (259)
+| +++.+++ +|.+|..|+.. | ++++|+.++..++|.+ .+.|||++++.+|+.
T Consensus 158 ~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld-----~L~F~NGlaLS~d~s 231 (376)
T KOG1520|consen 158 KPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD-----GLYFPNGLALSPDGS 231 (376)
T ss_pred eeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhh-----cccccccccCCCCCC
Confidence 55 4888998 69999998642 2 7788888877666654 378999999999998
Q ss_pred -EEEecCCCCCCcccceeeeeccCCCceEEEEeC---CCCcEEEecCCCC-CcceeE
Q 039124 206 -IFFTDTSKRYNRVDHFFILLEGESTGRLLRYDP---PTKSNSYCVRWLG-FSKWST 257 (259)
Q Consensus 206 -IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp---~tg~~~vl~~~L~-~pNGva 257 (259)
+.|++++ ..|+.||-. +-|+.++.++||. ||.-|.
T Consensus 232 fvl~~Et~-----------------~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR 271 (376)
T KOG1520|consen 232 FVLVAETT-----------------TARIKRYWIKGPKAGTSEVFAEGLPGYPDNIR 271 (376)
T ss_pred EEEEEeec-----------------cceeeeeEecCCccCchhhHhhcCCCCCccee
Confidence 6677664 347777764 3455688888874 776654
No 11
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=7.5e-07 Score=81.40 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=81.1
Q ss_pred CCCCceeEEEcCCCCEEEEEcC-----------CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcC
Q 039124 78 EVFGPESLEFDGLGRGPYTGLA-----------DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWC 146 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~-----------~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 146 (259)
+...|.+..+|++|++|+++.. .|.|+|+++.+. .+.. ++ .-.
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-~~~l----------~~---------------~~~ 162 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-VVRL----------LD---------------DDL 162 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-EEEe----------ec---------------CcE
Confidence 4688999999999995555544 367999998655 2221 11 113
Q ss_pred CCcceEEEeCCCCcEEEEeCCCc-eEEEECC--CCe---EE--EeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcc
Q 039124 147 GRPLGLRFNKDTGDLYIADAYYG-LLVVGSK--GGL---AT--PLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRV 218 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~~G-l~~v~~~--gg~---~~--~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~ 218 (259)
..|+||+|++++..||++|...+ |++++.+ ++. .. ...+..+ ..|+++++|.+|+||..-.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~----G~PDG~~vDadG~lw~~a~------- 231 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEP----GLPDGMAVDADGNLWVAAV------- 231 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCC----CCCCceEEeCCCCEEEecc-------
Confidence 46999999996349999999865 7888643 221 11 1112222 3799999999999997321
Q ss_pred cceeeeeccCCCceEEEEeCCCCcEEEe
Q 039124 219 DHFFILLEGESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 219 ~~~~~~~e~~~~GrL~rydp~tg~~~vl 246 (259)
...++|.+|+|+.+...++
T Consensus 232 ---------~~g~~v~~~~pdG~l~~~i 250 (307)
T COG3386 232 ---------WGGGRVVRFNPDGKLLGEI 250 (307)
T ss_pred ---------cCCceEEEECCCCcEEEEE
Confidence 1124899999984344443
No 12
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.49 E-value=4e-06 Score=74.73 Aligned_cols=133 Identities=13% Similarity=0.086 Sum_probs=95.7
Q ss_pred cCCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC
Q 039124 68 LVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG 147 (259)
Q Consensus 68 L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 147 (259)
--++++.-+|.-..|.+|+++++|..++|+... .|.|++++....++|..+. ++..+
T Consensus 92 tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~----------------------~~a~~ 148 (353)
T COG4257 92 TGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPL----------------------EHADA 148 (353)
T ss_pred CCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccc----------------------ccCCC
Confidence 345788888888999999999999988888776 8999999877677775431 12223
Q ss_pred CcceEEEeCCCCcEEEEeCCCce-EEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeec
Q 039124 148 RPLGLRFNKDTGDLYIADAYYGL-LVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLE 226 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~Gl-~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e 226 (259)
.-.-..||+. |+||.... .|. =++||.++.++++-.. .| ..|+++++.+||.+|++.-...
T Consensus 149 nlet~vfD~~-G~lWFt~q-~G~yGrLdPa~~~i~vfpaP-qG---~gpyGi~atpdGsvwyaslagn------------ 210 (353)
T COG4257 149 NLETAVFDPW-GNLWFTGQ-IGAYGRLDPARNVISVFPAP-QG---GGPYGICATPDGSVWYASLAGN------------ 210 (353)
T ss_pred cccceeeCCC-ccEEEeec-cccceecCcccCceeeeccC-CC---CCCcceEECCCCcEEEEecccc------------
Confidence 3346789995 99998753 332 2889998877766433 33 3699999999999999964322
Q ss_pred cCCCceEEEEeCCCCcEEEe
Q 039124 227 GESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~vl 246 (259)
.|-|+||.++..+++
T Consensus 211 -----aiaridp~~~~aev~ 225 (353)
T COG4257 211 -----AIARIDPFAGHAEVV 225 (353)
T ss_pred -----ceEEcccccCCccee
Confidence 466667766644444
No 13
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.46 E-value=2.7e-06 Score=78.43 Aligned_cols=156 Identities=19% Similarity=0.138 Sum_probs=92.2
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC-
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD- 157 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~- 157 (259)
|..|-+++|.++|+ +|+....|+|++++.++.....++.. . + +. ...-+..+|++++++
T Consensus 1 L~~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g~~~~~v~~~-~---~-v~--------------~~~~~gllgia~~p~f 60 (331)
T PF07995_consen 1 LNNPRSMAFLPDGR-LLVAERSGRIWVVDKDGSLKTPVADL-P---E-VF--------------ADGERGLLGIAFHPDF 60 (331)
T ss_dssp ESSEEEEEEETTSC-EEEEETTTEEEEEETTTEECEEEEE--T---T-TB--------------TSTTBSEEEEEE-TTC
T ss_pred CCCceEEEEeCCCc-EEEEeCCceEEEEeCCCcCcceeccc-c---c-cc--------------ccccCCcccceecccc
Confidence 46799999999998 55566699999999666521222111 0 1 11 112335799999982
Q ss_pred --CCcEEEEeCCC---------ceEEEECCCC-----eEEEeeecCCC--CCccccccEEEcCCCcEEEecCCCCCCccc
Q 039124 158 --TGDLYIADAYY---------GLLVVGSKGG-----LATPLATQAGG--KPILFANDLDVHKNGSIFFTDTSKRYNRVD 219 (259)
Q Consensus 158 --~G~L~VaD~~~---------Gl~~v~~~gg-----~~~~l~~~~~g--~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~ 219 (259)
++.|||+-... .|.++..+.+ ..+.++..... ...+....|++++||.||++-.+..- .+
T Consensus 61 ~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~ 138 (331)
T PF07995_consen 61 ASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DD 138 (331)
T ss_dssp CCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GG
T ss_pred CCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cc
Confidence 48999975532 3555543322 13334433222 34567788999999999998665432 11
Q ss_pred ceeeeeccCCCceEEEEeCCCC-------------cEEEecCCCCCcceeEE
Q 039124 220 HFFILLEGESTGRLLRYDPPTK-------------SNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg-------------~~~vl~~~L~~pNGval 258 (259)
..+. .....|.++|+|++.. ..++.+.||.-|-|++|
T Consensus 139 ~~~~--~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~ 188 (331)
T PF07995_consen 139 NAQD--PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAF 188 (331)
T ss_dssp GGCS--TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEE
T ss_pred cccc--cccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEE
Confidence 1111 1356799999998733 35788888888888876
No 14
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.44 E-value=1.7e-05 Score=76.06 Aligned_cols=168 Identities=15% Similarity=0.045 Sum_probs=101.2
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
.|.+.. .|..|-+++|.++|+++++.-..|+|++++.++....... ..+ + + .....-+.++
T Consensus 22 ~~~va~-GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~-~l~---~-v-------------~~~~ge~GLl 82 (454)
T TIGR03606 22 KKVLLS-GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVF-TLP---E-I-------------VNDAQHNGLL 82 (454)
T ss_pred EEEEEC-CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeee-cCC---c-e-------------eccCCCCcee
Confidence 455555 4999999999999996555555799999987654211111 000 0 0 0111245689
Q ss_pred eEEEeCC------CCcEEEEeC----------CCceEEEECC--CC---eEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 151 GLRFNKD------TGDLYIADA----------YYGLLVVGSK--GG---LATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 151 Gl~~d~~------~G~L~VaD~----------~~Gl~~v~~~--gg---~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
||+++++ ++.|||+-+ ...|.++..+ +. ..+.+.........++-..|++++||.||||
T Consensus 83 glal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs 162 (454)
T TIGR03606 83 GLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYT 162 (454)
T ss_pred eEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEE
Confidence 9999853 357999732 2346665432 21 1234444443334567778999999999997
Q ss_pred cCCCCCC------cccceee-----e----eccCCCceEEEEeCCCCc------------EEEecCCCCCcceeEE
Q 039124 210 DTSKRYN------RVDHFFI-----L----LEGESTGRLLRYDPPTKS------------NSYCVRWLGFSKWSTI 258 (259)
Q Consensus 210 Dss~~~~------~~~~~~~-----~----~e~~~~GrL~rydp~tg~------------~~vl~~~L~~pNGval 258 (259)
--..... ...-.+. . -.....|.++|+|++ |+ -++.+-|+.-|-|++|
T Consensus 163 ~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~D-GsiP~dNPf~~g~~~eIyA~G~RNp~Gla~ 237 (454)
T TIGR03606 163 IGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLD-GSIPKDNPSINGVVSHIFTYGHRNPQGLAF 237 (454)
T ss_pred ECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCC-CCCCCCCCccCCCcceEEEEeccccceeEE
Confidence 6554210 0000000 0 012467999999998 54 3677778888888876
No 15
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.37 E-value=3.1e-06 Score=63.51 Aligned_cols=68 Identities=28% Similarity=0.432 Sum_probs=51.1
Q ss_pred ceEEEeCCCCcEEEEeCC-----------------Cc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEec
Q 039124 150 LGLRFNKDTGDLYIADAY-----------------YG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~-----------------~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
+++.+++++|.+|++|+. .| |++.||.+++.+++.+. +.||||+++++|+. +.|++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-----L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-----LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-----ESSEEEEEE-TTSSEEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-----CCccCeEEEcCCCCEEEEEe
Confidence 367888855999999974 13 99999999998888764 77999999999998 88998
Q ss_pred CCCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 211 TSKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 211 ss~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
+.. .|++||-.+
T Consensus 76 t~~-----------------~Ri~rywl~ 87 (89)
T PF03088_consen 76 TGR-----------------YRILRYWLK 87 (89)
T ss_dssp GGG-----------------TEEEEEESS
T ss_pred ccC-----------------ceEEEEEEe
Confidence 763 389998764
No 16
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.36 E-value=2.4e-05 Score=72.25 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=97.9
Q ss_pred cCCCeEEccCCCCCceeEEEcCCCCEEEEEc-CCCeEEEEeCC--CccEEEEEEeecCccccccccCccccccccccccC
Q 039124 68 LVTGKLEFVDEVFGPESLEFDGLGRGPYTGL-ADGRIVRWMGE--NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEK 144 (259)
Q Consensus 68 L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~-~~G~I~ri~~~--~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~ 144 (259)
|+....+-...-.||..++|+++|+.+|+.. .++.|..++.+ ...++....... .. ....
T Consensus 180 l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~------~~-----------~~~~ 242 (345)
T PF10282_consen 180 LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST------LP-----------EGFT 242 (345)
T ss_dssp EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES------CE-----------TTSC
T ss_pred EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee------cc-----------cccc
Confidence 4333334445568999999999998888764 46777766544 332333221110 00 0001
Q ss_pred cCCCcceEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEEeeec-CCCCCccccccEEEcCCCc-EEEecCCCCCCccc
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQ-AGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVD 219 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~-~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~ 219 (259)
....|.+|+++++...|||++.... ++.+|.++|.++.+... ..| .+|.+++++++|+ +|+++..+.
T Consensus 243 ~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G---~~Pr~~~~s~~g~~l~Va~~~s~----- 314 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG---KFPRHFAFSPDGRYLYVANQDSN----- 314 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS---SSEEEEEE-TTSSEEEEEETTTT-----
T ss_pred ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC---CCccEEEEeCCCCEEEEEecCCC-----
Confidence 1126889999996346899987765 67777777776655322 223 4799999999998 888876542
Q ss_pred ceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 220 HFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
.=.++++|++||+.+.+...+..++-+|+
T Consensus 315 ----------~v~vf~~d~~tG~l~~~~~~~~~~~p~ci 343 (345)
T PF10282_consen 315 ----------TVSVFDIDPDTGKLTPVGSSVPIPSPVCI 343 (345)
T ss_dssp ----------EEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred ----------eEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence 12577889999998888766666666665
No 17
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.34 E-value=8.8e-06 Score=75.93 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=75.9
Q ss_pred EccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEe-CCCc-----cEEEEEEeecCccccccccCcccccccccccc--Cc
Q 039124 74 EFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWM-GENV-----GWETFAIVTSNWSEKLCARGVDSTTAKQWKHE--KW 145 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~-~~~~-----~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~--~~ 145 (259)
++...+..|+++++.++| +|++. ..+|+++. .++. ..+.+. + + +... ..
T Consensus 66 vfa~~l~~p~Gi~~~~~G--lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~-----------~-~--------~~~~~~~~ 122 (367)
T TIGR02604 66 VFAEELSMVTGLAVAVGG--VYVAT-PPDILFLRDKDGDDKADGEREVLL-----------S-G--------FGGQINNH 122 (367)
T ss_pred EeecCCCCccceeEecCC--EEEeC-CCeEEEEeCCCCCCCCCCccEEEE-----------E-c--------cCCCCCcc
Confidence 444558899999998777 55544 44799883 3221 111111 0 0 1100 01
Q ss_pred CCCcceEEEeCCCCcEEEEeCC--------------------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc
Q 039124 146 CGRPLGLRFNKDTGDLYIADAY--------------------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS 205 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~--------------------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~ 205 (259)
...+++++++++ |.|||++.. .+++++++++++.+.++. .++.|++++++++|+
T Consensus 123 ~~~~~~l~~gpD-G~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~~G~ 196 (367)
T TIGR02604 123 HHSLNSLAWGPD-GWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDSWGD 196 (367)
T ss_pred cccccCceECCC-CCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECCCCC
Confidence 244889999994 999998762 249999999988776653 367899999999999
Q ss_pred EEEecCCC
Q 039124 206 IFFTDTSK 213 (259)
Q Consensus 206 IyfTDss~ 213 (259)
+|+||...
T Consensus 197 l~~tdn~~ 204 (367)
T TIGR02604 197 VFFCDNDD 204 (367)
T ss_pred EEEEccCC
Confidence 99999853
No 18
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=0.00011 Score=67.34 Aligned_cols=160 Identities=13% Similarity=0.166 Sum_probs=106.7
Q ss_pred CcccCCCeEEccCCCCCceeEEEcCCCCEEEEEcC-CCeEEEE--eCCCccEEEEEEeecCccccccccCcccccccccc
Q 039124 65 LSRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLA-DGRIVRW--MGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWK 141 (259)
Q Consensus 65 n~~L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~-~G~I~ri--~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~ 141 (259)
..+|+.++....-.-.||.-|+|.++|+..|+-.. +++|..+ ++..+.++...... + .|. ..
T Consensus 176 dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~-------t------lP~-dF- 240 (346)
T COG2706 176 DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID-------T------LPE-DF- 240 (346)
T ss_pred cCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec-------c------Ccc-cc-
Confidence 44677766666666799999999999999898654 6776655 44333333322110 1 010 01
Q ss_pred ccCcCCCcceEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEEeeec-CCCCCccccccEEEcCCCc-EEEecCCCCCC
Q 039124 142 HEKWCGRPLGLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQ-AGGKPILFANDLDVHKNGS-IFFTDTSKRYN 216 (259)
Q Consensus 142 ~~~~~grPlGl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~-~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~ 216 (259)
.....--.|++.++..-||++|.+.. +++|++.+|+++.+... .+| .+|.|..+++.|+ ++++.-.
T Consensus 241 --~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg---~~PR~F~i~~~g~~Liaa~q~---- 311 (346)
T COG2706 241 --TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG---QFPRDFNINPSGRFLIAANQK---- 311 (346)
T ss_pred --CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC---cCCccceeCCCCCEEEEEccC----
Confidence 11112246788885335688886653 79999999976655432 333 4899999999998 5555432
Q ss_pred cccceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEEC
Q 039124 217 RVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTII 259 (259)
Q Consensus 217 ~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval~ 259 (259)
..+=.+|+.|++||+.+.+.....-|..+|+.
T Consensus 312 -----------sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~ 343 (346)
T COG2706 312 -----------SDNITVFERDKETGRLTLLGRYAVVPEPVCVK 343 (346)
T ss_pred -----------CCcEEEEEEcCCCceEEecccccCCCCcEEEE
Confidence 22337999999999999999999999999873
No 19
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.26 E-value=0.00012 Score=66.69 Aligned_cols=144 Identities=13% Similarity=0.121 Sum_probs=86.4
Q ss_pred CCceeEEEcCCCCEEEEEcC-CCeEEEEeCC--CccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 80 FGPESLEFDGLGRGPYTGLA-DGRIVRWMGE--NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~-~G~I~ri~~~--~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
.+|++++++++|+.+|+... +++|..|+.+ +...+...... +- + ........|.++++++
T Consensus 175 ~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~-------~~-p---------~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 175 AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD-------MM-P---------ADFSDTRWAADIHITP 237 (330)
T ss_pred CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe-------cC-C---------CcCCCCccceeEEECC
Confidence 68999999999998988876 7888776654 22222211000 00 0 0001122466899999
Q ss_pred CCCcEEEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCce
Q 039124 157 DTGDLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGR 232 (259)
Q Consensus 157 ~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~Gr 232 (259)
++..|||++...+ ++.++.+++..+.+.....+ ..|.++.+++||+ +|++...+. +=.
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~---------------~v~ 299 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSH---------------HIS 299 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEccCC---------------cEE
Confidence 6345899876554 45566666544333322222 4789999999997 888764321 125
Q ss_pred EEEEeCCCCcEEEecC--CCCCcceeEE
Q 039124 233 LLRYDPPTKSNSYCVR--WLGFSKWSTI 258 (259)
Q Consensus 233 L~rydp~tg~~~vl~~--~L~~pNGval 258 (259)
+|++|..+|..+.+.. --..|++|++
T Consensus 300 v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 300 VYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEEEcCCCCcEEEccccccCCCceEEEE
Confidence 7777777776655432 2346887775
No 20
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.25 E-value=9.8e-06 Score=80.79 Aligned_cols=145 Identities=16% Similarity=0.104 Sum_probs=105.1
Q ss_pred ccCCC--eEEccCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCcccccccccccc
Q 039124 67 RLVTG--KLEFVDEVFGPESLEFDGLG-RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHE 143 (259)
Q Consensus 67 ~L~~~--e~l~~~~l~gPE~ia~D~~G-~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~ 143 (259)
.|..+ +.++--+|..||+||+|.-+ ++|||+....+|-.-..+|.. ... + . +
T Consensus 1053 sL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~-rkv----------L-------------f-~ 1107 (1289)
T KOG1214|consen 1053 SLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE-RKV----------L-------------F-Y 1107 (1289)
T ss_pred cccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCce-eeE----------E-------------E-e
Confidence 45554 46666789999999999844 688999888887766666541 111 1 1 1
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCccc
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVD 219 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~ 219 (259)
...-.|.+|.+|.-.|+||-.|+..- |-+++.+|...++|+.+ -+..||+|.+|+.-+ +-|.|..++
T Consensus 1108 tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~----DigLPNGLtfdpfs~~LCWvDAGt~----- 1178 (1289)
T KOG1214|consen 1108 TDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINT----DIGLPNGLTFDPFSKLLCWVDAGTK----- 1178 (1289)
T ss_pred ecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeec----ccCCCCCceeCcccceeeEEecCCc-----
Confidence 22345889999987799999998763 77888888777777754 356899999999876 777887754
Q ss_pred ceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeE
Q 039124 220 HFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWST 257 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGva 257 (259)
||-+..|+.-.-+++..+|.+|-+|.
T Consensus 1179 ------------rleC~~p~g~gRR~i~~~LqYPF~it 1204 (1289)
T KOG1214|consen 1179 ------------RLECTLPDGTGRRVIQNNLQYPFSIT 1204 (1289)
T ss_pred ------------ceeEecCCCCcchhhhhcccCceeee
Confidence 67777776334567778888887764
No 21
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00013 Score=68.59 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=83.9
Q ss_pred CceeEEEcCCCCEEEEEcC---CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 81 GPESLEFDGLGRGPYTGLA---DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~---~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
.|.+++++++|.-+|+... ++.|..++......... ......|.|++++++
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~--------------------------~~vG~~P~~~a~~p~ 170 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT--------------------------IPVGNTPTGVAVDPD 170 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE--------------------------EecCCCcceEEECCC
Confidence 9999999999876777665 68899999876632210 122336899999995
Q ss_pred CCc-EEEEeCCCc-eEEEECCCCeEEEeeecC-CCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceE
Q 039124 158 TGD-LYIADAYYG-LLVVGSKGGLATPLATQA-GGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 158 ~G~-L~VaD~~~G-l~~v~~~gg~~~~l~~~~-~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
|+ +||+|...+ |..+|.++..+.. .... .-.....|.+++++++|. +|+++..+. .+++
T Consensus 171 -g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~---------------~~~v 233 (381)
T COG3391 171 -GNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG---------------SNNV 233 (381)
T ss_pred -CCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCC---------------CceE
Confidence 66 999996555 7778877654332 2111 012456899999999998 999987642 3456
Q ss_pred EEEeCCCCcEEE
Q 039124 234 LRYDPPTKSNSY 245 (259)
Q Consensus 234 ~rydp~tg~~~v 245 (259)
.++|..++.+..
T Consensus 234 ~~id~~~~~v~~ 245 (381)
T COG3391 234 LKIDTATGNVTA 245 (381)
T ss_pred EEEeCCCceEEE
Confidence 666665554443
No 22
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.18 E-value=2.4e-05 Score=81.12 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=80.9
Q ss_pred CCCceeEEEcC-CCCEEEEEcCCCeEEEEeCC-C----ccEEEEEEeecC---ccccccccCccccccccccccCcCCCc
Q 039124 79 VFGPESLEFDG-LGRGPYTGLADGRIVRWMGE-N----VGWETFAIVTSN---WSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 79 l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~-~----~~~~~fa~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
...---+|+|| +|.++.++....+|||+..- + ..|+..|.++.. .-+ .|..|. .+.+.+...|
T Consensus 406 ~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~de-sCGDGa-------lA~dA~L~~P 477 (1899)
T KOG4659|consen 406 TSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADE-SCGDGA-------LAQDAQLIFP 477 (1899)
T ss_pred ccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCcccccc-ccCcch-------hcccceeccC
Confidence 34445689999 88866666778899998531 1 135655544321 001 233111 1224455579
Q ss_pred ceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeec---------------CCCCCccccccEEEcC-CCcEEEecCC
Q 039124 150 LGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQ---------------AGGKPILFANDLDVHK-NGSIFFTDTS 212 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~---------------~~g~pl~~~Ndl~vd~-dG~IyfTDss 212 (259)
.||+||+ +|.||.||+.+ |.+||.+| .++++... +....+..|.+|+|+| |+.+|+-|..
T Consensus 478 kGIa~dk-~g~lYfaD~t~-IR~iD~~g-iIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n 553 (1899)
T KOG4659|consen 478 KGIAFDK-MGNLYFADGTR-IRVIDTTG-IISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN 553 (1899)
T ss_pred CceeEcc-CCcEEEecccE-EEEeccCc-eEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc
Confidence 9999999 59999999865 88898664 56666532 1224577999999999 6779999875
No 23
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.12 E-value=3.3e-05 Score=67.63 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=58.8
Q ss_pred cCCCcceEEEeCCCCcEEEEeCCCc-e--EEEECCCCeEE---EeeecCC--CCCccccccEEEcCCCcEEEecCCCCCC
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAYYG-L--LVVGSKGGLAT---PLATQAG--GKPILFANDLDVHKNGSIFFTDTSKRYN 216 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~~G-l--~~v~~~gg~~~---~l~~~~~--g~pl~~~Ndl~vd~dG~IyfTDss~~~~ 216 (259)
..+-|+||++|.+...+|+.|+-.- + +..|-.||.+. .+.+--. ...-..|++++||.+|++|++..+
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n---- 231 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN---- 231 (310)
T ss_pred hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----
Confidence 3567899999987678899998653 5 55567777632 2222111 111247999999999999999865
Q ss_pred cccceeeeeccCCCceEEEEeCCCCcE
Q 039124 217 RVDHFFILLEGESTGRLLRYDPPTKSN 243 (259)
Q Consensus 217 ~~~~~~~~~e~~~~GrL~rydp~tg~~ 243 (259)
.|+++++||.||+.
T Consensus 232 -------------g~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 232 -------------GGTVQKVDPTTGKI 245 (310)
T ss_pred -------------CcEEEEECCCCCcE
Confidence 47999999999864
No 24
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.08 E-value=3.9e-05 Score=76.68 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=92.8
Q ss_pred CCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
.-|-+|+||= +..++||++....|-|-..+|...+++ .....+.|-||++|-..
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti-------------------------~n~~L~SPEGiAVDh~~ 1079 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETI-------------------------VNSGLISPEGIAVDHIR 1079 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccCCCCcee-------------------------ecccCCCccceeeeecc
Confidence 4466788885 566889999999998887776532221 12446789999999755
Q ss_pred CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeeccCCCceEEEE
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRY 236 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ry 236 (259)
-++|-+|+-.. |-.-..+|.+.++|+.+ .+.-|..|++|+ .|++|+||.... +-.+-+.
T Consensus 1080 Rn~ywtDS~lD~IevA~LdG~~rkvLf~t----dLVNPR~iv~D~~rgnLYwtDWnRe---------------nPkIets 1140 (1289)
T KOG1214|consen 1080 RNMYWTDSVLDKIEVALLDGSERKVLFYT----DLVNPRAIVVDPIRGNLYWTDWNRE---------------NPKIETS 1140 (1289)
T ss_pred ceeeeeccccchhheeecCCceeeEEEee----cccCcceEEeecccCceeecccccc---------------CCcceee
Confidence 68999998764 32224566667777653 356789999999 578999996532 1244455
Q ss_pred eCCCCcEEEec-CCCCCcceeEE
Q 039124 237 DPPTKSNSYCV-RWLGFSKWSTI 258 (259)
Q Consensus 237 dp~tg~~~vl~-~~L~~pNGval 258 (259)
+.+.+..++|+ +++..|||+.|
T Consensus 1141 ~mDG~NrRilin~DigLPNGLtf 1163 (1289)
T KOG1214|consen 1141 SMDGENRRILINTDIGLPNGLTF 1163 (1289)
T ss_pred ccCCccceEEeecccCCCCCcee
Confidence 55533445544 78999999876
No 25
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.03 E-value=0.00091 Score=61.77 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=70.8
Q ss_pred CCCceeEEEcCCCCEEEE-EcCCCeEEEEeCCCcc--EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 79 VFGPESLEFDGLGRGPYT-GLADGRIVRWMGENVG--WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt-~~~~G~I~ri~~~~~~--~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
-..|.++.++++|+.+|+ +....+|+.++.+... +..... .. .+.+..|..++|+
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~---------------------~~-~~~G~GPRh~~f~ 200 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS---------------------IK-VPPGSGPRHLAFS 200 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE---------------------EE-CSTTSSEEEEEE-
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec---------------------cc-cccCCCCcEEEEc
Confidence 578889999999987776 6677888887765432 221000 11 2345569999999
Q ss_pred CCCCcEEEEeCCCc---eEEEECCCCeEEEeee--cC-CC-CCccccccEEEcCCCc-EEEecCCC
Q 039124 156 KDTGDLYIADAYYG---LLVVGSKGGLATPLAT--QA-GG-KPILFANDLDVHKNGS-IFFTDTSK 213 (259)
Q Consensus 156 ~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~--~~-~g-~pl~~~Ndl~vd~dG~-IyfTDss~ 213 (259)
++...+||++...+ ++.++.+++..+.+.. .. .+ ..-+.+.+|++++||+ +|+++...
T Consensus 201 pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~ 266 (345)
T PF10282_consen 201 PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS 266 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT
T ss_pred CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC
Confidence 96447899887665 4555655665544432 11 11 1224799999999998 89998764
No 26
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.93 E-value=6.1e-05 Score=65.98 Aligned_cols=143 Identities=15% Similarity=0.054 Sum_probs=82.7
Q ss_pred eeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccC-ccccccccccccCcCCCcceEEEeCCCCc
Q 039124 83 ESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARG-VDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 83 E~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
|++.||. .+.++|+++..|+|.|++-.+...-. +. .+++ ..+ ...++.|+|-+.++.
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~r-a~---------ie~p~~ag------~ilpv~~~~q~~~v~----- 76 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYR-AK---------IEGPPSAG------FILPVEGGPQEFAVG----- 76 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEE-EE---------EecCccee------EEEEecCCCceEEEe-----
Confidence 6677776 67899999999999999876542111 10 0000 000 011233333222222
Q ss_pred EEEEeCCCceEEEECCCCeEEEeee---cCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEe
Q 039124 161 LYIADAYYGLLVVGSKGGLATPLAT---QAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237 (259)
Q Consensus 161 L~VaD~~~Gl~~v~~~gg~~~~l~~---~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ryd 237 (259)
|-...++...|-....+.++.+ -..+..-++.||-.+||+|+.|..-++. +. +.+| .-.|.||+.-
T Consensus 77 ---~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-~~------~~le-~~~g~Ly~~~ 145 (310)
T KOG4499|consen 77 ---CGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-FG------DDLE-PIGGELYSWL 145 (310)
T ss_pred ---ecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeecc-cc------cccc-ccccEEEEec
Confidence 1122234444422222222222 1233446789999999999998877753 21 2343 3346677766
Q ss_pred CCCCcEEEecCCCCCcceeEE
Q 039124 238 PPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 238 p~tg~~~vl~~~L~~pNGval 258 (259)
+. ++++++-+.+..+||++|
T Consensus 146 ~~-h~v~~i~~~v~IsNgl~W 165 (310)
T KOG4499|consen 146 AG-HQVELIWNCVGISNGLAW 165 (310)
T ss_pred cC-CCceeeehhccCCccccc
Confidence 65 899999999999999987
No 27
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.89 E-value=0.002 Score=56.10 Aligned_cols=136 Identities=13% Similarity=0.071 Sum_probs=86.3
Q ss_pred CCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCccE-EEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 80 FGPESLEFDGLGRGPYTGL-ADGRIVRWMGENVGW-ETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~-~~G~I~ri~~~~~~~-~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
..|.+++|+++|..+|++. .+|+|..|+...... ..+... .. .....+-.|.+++++++
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~-------~~------------~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE-------IP------------GVHPEAVQPVGIKLTKD 217 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-------cc------------ccccccCCccceEECCC
Confidence 4688899999998776654 589999998865421 111100 00 00012335789999985
Q ss_pred CCc-EEEEeCCC-ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 158 TGD-LYIADAYY-GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 158 ~G~-L~VaD~~~-Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
|+ +|++.... .+..+|.++++...... .+ ..+.+++++++|. ||.+.. ..|.|.
T Consensus 218 -g~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~---~~~~~~~~~~~g~~l~~~~~-----------------~~~~i~ 274 (300)
T TIGR03866 218 -GKTAFVALGPANRVAVVDAKTYEVLDYLL--VG---QRVWQLAFTPDEKYLLTTNG-----------------VSNDVS 274 (300)
T ss_pred -CCEEEEEcCCCCeEEEEECCCCcEEEEEE--eC---CCcceEEECCCCCEEEEEcC-----------------CCCeEE
Confidence 65 47765443 48888988775433221 12 2578999999997 555542 135799
Q ss_pred EEeCCCCcE-EEecCCCCCcceeEE
Q 039124 235 RYDPPTKSN-SYCVRWLGFSKWSTI 258 (259)
Q Consensus 235 rydp~tg~~-~vl~~~L~~pNGval 258 (259)
.+|..+++. +.+.- -.-||||++
T Consensus 275 v~d~~~~~~~~~~~~-~~~~~~~~~ 298 (300)
T TIGR03866 275 VIDVAALKVIKSIKV-GRLPWGVVV 298 (300)
T ss_pred EEECCCCcEEEEEEc-ccccceeEe
Confidence 999998875 34433 377899886
No 28
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.75 E-value=0.00045 Score=61.36 Aligned_cols=113 Identities=18% Similarity=0.245 Sum_probs=60.1
Q ss_pred CCCceeEEEcCCCCEEEEEcCC--CeEEEEeC--CCccEEEEEEeecCccccccccCcccccccccc-ccCcCCCcceEE
Q 039124 79 VFGPESLEFDGLGRGPYTGLAD--GRIVRWMG--ENVGWETFAIVTSNWSEKLCARGVDSTTAKQWK-HEKWCGRPLGLR 153 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~--G~I~ri~~--~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~grPlGl~ 153 (259)
=.|-|+++||+.++.+|+.-.. .+|+.++. ....... ..... +. .......|-|+.
T Consensus 117 N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~--~~~~~-----------------~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 117 NKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV--SDDQD-----------------LDDDKLFVRDLSGLS 177 (248)
T ss_dssp SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE--EE-HH-----------------HH-HT--SS---EEE
T ss_pred CcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee--ccccc-----------------cccccceeccccceE
Confidence 3678999999987778876543 45777765 2211111 00000 11 112234588999
Q ss_pred EeCCCCcEEEEeCC-CceEEEECCCCeEEEee--ecCCC--CCccccccEEEcCCCcEEEec
Q 039124 154 FNKDTGDLYIADAY-YGLLVVGSKGGLATPLA--TQAGG--KPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 154 ~d~~~G~L~VaD~~-~Gl~~v~~~gg~~~~l~--~~~~g--~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+++.+|+|||-... .-|+.+|.+|..+..+. ....| +.+..|-||++|++|+||++.
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 99999999986544 45899998876444332 11122 346789999999999999975
No 29
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.73 E-value=0.0016 Score=58.18 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=85.0
Q ss_pred CCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 77 DEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 77 ~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
..-...|+++.- +++++--...+|..+.++.+.-. ..+| . ..+..-||+.|
T Consensus 87 ~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~------------------------~---y~~EGWGLt~d 138 (264)
T PF05096_consen 87 PPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTF------------------------P---YPGEGWGLTSD 138 (264)
T ss_dssp TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEE------------------------E----SSS--EEEEC
T ss_pred CccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEE------------------------e---cCCcceEEEcC
Confidence 344677888874 34555567788888888886531 1111 1 12344689877
Q ss_pred CCCCcEEEEeCCCceEEEECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 156 KDTGDLYIADAYYGLLVVGSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 156 ~~~G~L~VaD~~~Gl~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
. ..||++|....|+.+||++-+ .+.+.-..+|.|+...|.|..- +|.||..--.+. +++
T Consensus 139 g--~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td-----------------~I~ 198 (264)
T PF05096_consen 139 G--KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD-----------------RIV 198 (264)
T ss_dssp S--SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS-----------------EEE
T ss_pred C--CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC-----------------eEE
Confidence 4 589999999999999998643 3333334588899999999998 899998775432 899
Q ss_pred EEeCCCCcEEEecC----------------CCCCcceeEE
Q 039124 235 RYDPPTKSNSYCVR----------------WLGFSKWSTI 258 (259)
Q Consensus 235 rydp~tg~~~vl~~----------------~L~~pNGval 258 (259)
++||.||+++-.++ +-..-||||.
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy 238 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY 238 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE
Confidence 99999999886542 1357899986
No 30
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.72 E-value=0.0012 Score=60.14 Aligned_cols=109 Identities=9% Similarity=-0.005 Sum_probs=65.5
Q ss_pred CCceeEEEcCCCCEEEEEcC-CCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 80 FGPESLEFDGLGRGPYTGLA-DGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~-~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
..|..++++++|+.+|++.. ++.|..|+.+... .... . ........|.+++++++
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~----------~-------------~~~~~~~~~~~~~~~p~ 136 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP----------I-------------QIIEGLEGCHSANIDPD 136 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc----------e-------------eeccCCCcccEeEeCCC
Confidence 37899999999998898754 6777777554211 0000 0 00011235899999996
Q ss_pred CCcEEEEeCCCc-eEEEECCC-CeEEEee-ecCCCCCccccccEEEcCCCc-EEEecC
Q 039124 158 TGDLYIADAYYG-LLVVGSKG-GLATPLA-TQAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~g-g~~~~l~-~~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
+..+||++...+ |..++.++ +...... ....-.+-..|+++++++||+ +|+++.
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence 446788988766 55556543 3222110 000001124689999999998 778765
No 31
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.002 Score=60.53 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=72.2
Q ss_pred CCCceeEEEcCCCCEEEEEcC-CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLA-DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~-~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
...|-++++++.|...|+... ++.|..++........ .......|.+++++++
T Consensus 73 ~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~--------------------------~~~vG~~P~~~~~~~~ 126 (381)
T COG3391 73 GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG--------------------------SIPVGLGPVGLAVDPD 126 (381)
T ss_pred CccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee--------------------------EeeeccCCceEEECCC
Confidence 478999999998886676554 4788888854432111 1122237999999997
Q ss_pred CCcEEEEeCC--Cc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 158 TGDLYIADAY--YG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 158 ~G~L~VaD~~--~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
++.+||+|+. .+ +..+|.+++..... ..-|. .|-+++++++|. +|++|+.
T Consensus 127 ~~~vYV~n~~~~~~~vsvid~~t~~~~~~--~~vG~---~P~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 127 GKYVYVANAGNGNNTVSVIDAATNKVTAT--IPVGN---TPTGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred CCEEEEEecccCCceEEEEeCCCCeEEEE--EecCC---CcceEEECCCCCeEEEEecC
Confidence 6699999995 34 78889888753322 22222 458999999998 9999944
No 32
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=97.51 E-value=0.0012 Score=69.07 Aligned_cols=125 Identities=17% Similarity=0.255 Sum_probs=83.7
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCcccc-ccccCccccccccccccCcCCCcceEEEeC
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEK-LCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
+|..|.+|++|..|.+||++-. +|.+++.++. .++...+.....++ .|++..+ +. +-..-.|..|++++
T Consensus 473 ~L~~PkGIa~dk~g~lYfaD~t--~IR~iD~~gi-Istlig~~~~~~~p~~C~~~~k------l~-~~~leWPT~LaV~P 542 (1899)
T KOG4659|consen 473 QLIFPKGIAFDKMGNLYFADGT--RIRVIDTTGI-ISTLIGTTPDQHPPRTCAQITK------LV-DLQLEWPTSLAVDP 542 (1899)
T ss_pred eeccCCceeEccCCcEEEeccc--EEEEeccCce-EEEeccCCCCccCccccccccc------hh-heeeecccceeecC
Confidence 4789999999999997777532 5777777665 44433222211111 4874322 11 23456799999999
Q ss_pred CCCcEEEEeCCCceEEEECCCCeEEEeeec----------------CCCCCccccccEEEcCCCcEEEecCCCC
Q 039124 157 DTGDLYIADAYYGLLVVGSKGGLATPLATQ----------------AGGKPILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 157 ~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~----------------~~g~pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
-++.|||.|... ++++++... ++.++.. +....+..+.+++|..+|.+|++++..+
T Consensus 543 mdnsl~Vld~nv-vlrit~~~r-V~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r 614 (1899)
T KOG4659|consen 543 MDNSLLVLDTNV-VLRITVVHR-VRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGR 614 (1899)
T ss_pred CCCeEEEeecce-EEEEccCcc-EEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccch
Confidence 889999998643 889988764 4544321 1223466789999999999999998653
No 33
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.39 E-value=0.014 Score=50.83 Aligned_cols=89 Identities=18% Similarity=0.272 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc-EEEEeCCCc
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD-LYIADAYYG 169 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~-L~VaD~~~G 169 (259)
+++++++..+|.|..|+.++..... . + ....+|.+++++++ |. +|++....+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~-----------~------------~---~~~~~~~~l~~~~d-g~~l~~~~~~~~ 53 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR-----------T------------F---PVGQRPRGITLSKD-GKLLYVCASDSD 53 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE-----------E------------E---ECCCCCCceEECCC-CCEEEEEECCCC
Confidence 3567788889999999986542111 0 0 12345788999985 65 677765554
Q ss_pred -eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecC
Q 039124 170 -LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 170 -l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
+..+|.++++....... + ..+..++++++|+ +|++..
T Consensus 54 ~v~~~d~~~~~~~~~~~~--~---~~~~~~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 54 TIQVIDLATGEVIGTLPS--G---PDPELFALHPNGKILYIANE 92 (300)
T ss_pred eEEEEECCCCcEEEeccC--C---CCccEEEECCCCCEEEEEcC
Confidence 77789887754322211 1 1246788999987 666653
No 34
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=97.35 E-value=0.00027 Score=52.70 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=43.8
Q ss_pred ccEEEcCCCcEEEecCCCCCCcccce--eeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 196 NDLDVHKNGSIFFTDTSKRYNRVDHF--FILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 196 Ndl~vd~dG~IyfTDss~~~~~~~~~--~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
|||+.-....+|+|.... | .+.|+ .+.+-.-+-|.++.||+ ++++++++++.+||||++
T Consensus 1 NDIvavG~~sFy~TNDhy-f-~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~ 61 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDHY-F-TDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAI 61 (86)
T ss_pred CCEEEECcCcEEEECchh-h-CcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEE
Confidence 677777777899998753 2 22232 22333467889999998 579999999999999985
No 35
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.34 E-value=0.00036 Score=40.84 Aligned_cols=22 Identities=18% Similarity=0.561 Sum_probs=19.5
Q ss_pred ccccccEEEcCCCcEEEecCCC
Q 039124 192 ILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 192 l~~~Ndl~vd~dG~IyfTDss~ 213 (259)
|..|.+++++++|+||++|+..
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCC
T ss_pred CcCCcEEEEeCCCCEEEEECCC
Confidence 4689999999999999999764
No 36
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.27 E-value=0.003 Score=57.23 Aligned_cols=86 Identities=21% Similarity=0.192 Sum_probs=57.8
Q ss_pred ceEEEeCCCCcEEEEeCCC-------------ceEEEECCCCeEEEee--ecCCCCCccccccEEEcCC------CcEEE
Q 039124 150 LGLRFNKDTGDLYIADAYY-------------GLLVVGSKGGLATPLA--TQAGGKPILFANDLDVHKN------GSIFF 208 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~-------------Gl~~v~~~gg~~~~l~--~~~~g~pl~~~Ndl~vd~d------G~Iyf 208 (259)
.++.+|+ .|+|||.|.+. -|+.+|.+++++-.-. ...--.+-.+.||++||.. +.+|+
T Consensus 4 ~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 4 QRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred cEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 5889998 59999999763 2899999988632211 1111124569999999982 56999
Q ss_pred ecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEecCCCCCc
Q 039124 209 TDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFS 253 (259)
Q Consensus 209 TDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~p 253 (259)
||++.. .|+.||..+++...++++...+
T Consensus 83 tD~~~~-----------------glIV~dl~~~~s~Rv~~~~~~~ 110 (287)
T PF03022_consen 83 TDSGGP-----------------GLIVYDLATGKSWRVLHNSFSP 110 (287)
T ss_dssp EETTTC-----------------EEEEEETTTTEEEEEETCGCTT
T ss_pred eCCCcC-----------------cEEEEEccCCcEEEEecCCcce
Confidence 998742 5777777777776666654443
No 37
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.09 E-value=0.019 Score=53.65 Aligned_cols=67 Identities=10% Similarity=-0.020 Sum_probs=46.2
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCC---------Cc-eEEEECCCCeEEEeeecCCCC----CccccccEEEcCCCc-EEE
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAY---------YG-LLVVGSKGGLATPLATQAGGK----PILFANDLDVHKNGS-IFF 208 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~---------~G-l~~v~~~gg~~~~l~~~~~g~----pl~~~Ndl~vd~dG~-Iyf 208 (259)
..+.+|.|+ +.++...||||..+ .+ |-.+|.++.+...=+ ..... -...++.+++++||+ +|+
T Consensus 44 ~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i-~~p~~p~~~~~~~~~~~~ls~dgk~l~V 121 (352)
T TIGR02658 44 DGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI-ELPEGPRFLVGTYPWMTSLTPDNKTLLF 121 (352)
T ss_pred EccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE-ccCCCchhhccCccceEEECCCCCEEEE
Confidence 356789997 88876689999983 33 677798886422111 11111 256789999999997 998
Q ss_pred ecCC
Q 039124 209 TDTS 212 (259)
Q Consensus 209 TDss 212 (259)
++.+
T Consensus 122 ~n~~ 125 (352)
T TIGR02658 122 YQFS 125 (352)
T ss_pred ecCC
Confidence 8754
No 38
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.057 Score=51.15 Aligned_cols=176 Identities=13% Similarity=-0.011 Sum_probs=100.6
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccE---EE-EEEeecCccccccccCccccccccccccCcC
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGW---ET-FAIVTSNWSEKLCARGVDSTTAKQWKHEKWC 146 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~---~~-fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 146 (259)
++.+..| ++.|-++++.++|.++.+....|++..+..++... .. ....... .++... .+....+....
T Consensus 59 ~~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~------~~Gll~-~al~~~fa~~~ 130 (399)
T COG2133 59 VEVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRG------QGGLLD-IALSPDFAQGR 130 (399)
T ss_pred ccccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEecc------CCCccc-eEecccccccc
Confidence 4555566 99999999999996666666668887776443210 00 0000000 001000 01112223344
Q ss_pred CCcceEEEeCCCCcEEEEeCCCceEEEECCCCe---EEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcc-----
Q 039124 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGL---ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRV----- 218 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~---~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~----- 218 (259)
-.|+|+++.. +.+|++.. ..+.+++....+ ...+...+.+...++.-.|+++|||.+|+|--+......
T Consensus 131 ~~~~~~a~~~--~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~ 207 (399)
T COG2133 131 LVYFGISEPG--GGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNV 207 (399)
T ss_pred eeeeEEEeec--CCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCcc
Confidence 4578888864 57787754 245666611011 234455566555789999999999999999776521110
Q ss_pred cceeeeeccCCCceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 219 DHFFILLEGESTGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 219 ~~~~~~~e~~~~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
...-.+++-+.. .++..|+.+...++..-|+.-|+|++|
T Consensus 208 ~~~Gk~~r~~~a-~~~~~d~p~~~~~i~s~G~RN~qGl~w 246 (399)
T COG2133 208 SLAGKVLRIDRA-GIIPADNPFPNSEIWSYGHRNPQGLAW 246 (399)
T ss_pred ccccceeeeccC-cccccCCCCCCcceEEeccCCccceee
Confidence 001111222222 255566667778899999999999986
No 39
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.95 E-value=0.013 Score=54.06 Aligned_cols=129 Identities=20% Similarity=0.244 Sum_probs=66.3
Q ss_pred CCeEEccCCCCCceeEEEcCC-CCEEEEEcCC---CeEEEEeCCCccEEEEEEeecCccccccccCcc------------
Q 039124 70 TGKLEFVDEVFGPESLEFDGL-GRGPYTGLAD---GRIVRWMGENVGWETFAIVTSNWSEKLCARGVD------------ 133 (259)
Q Consensus 70 ~~e~l~~~~l~gPE~ia~D~~-G~~~yt~~~~---G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~------------ 133 (259)
+.|++..| +.-|-+++||+. |++|.++... -+|.++...+. +- | +.|.++..
T Consensus 172 ~~~i~A~G-lRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~n----YG-----W--P~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 172 DSEIYAYG-LRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGN----YG-----W--PYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B-----------T--TTBSSSCSTTSS-ECTGSS-
T ss_pred eEEEEEeC-CCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCc----CC-----C--CCCcCCCCCCCCccccccCC
Confidence 44766665 999999999998 7744444321 35777765432 11 1 01221000
Q ss_pred -ccccccccccCcCCCcceEEEeCC------CCcEEEEeCCCc-eEEEECCCC-eEEEeeecCCCCCccccccEEEcCCC
Q 039124 134 -STTAKQWKHEKWCGRPLGLRFNKD------TGDLYIADAYYG-LLVVGSKGG-LATPLATQAGGKPILFANDLDVHKNG 204 (259)
Q Consensus 134 -~~~~~~~~~~~~~grPlGl~~d~~------~G~L~VaD~~~G-l~~v~~~gg-~~~~l~~~~~g~pl~~~Ndl~vd~dG 204 (259)
.+....+.+ .....|.|+.|-+. .|.++|+|...+ |+++..+.+ .+... ..+-+..-.++-|+++++||
T Consensus 240 ~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 240 PGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEE-EEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEE-EEECTTSSS-EEEEEEETTS
T ss_pred CCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccce-EEccccCCCCceEEEEcCCC
Confidence 000000111 22246899988742 267999998654 877776533 21111 11112222378999999999
Q ss_pred cEEEecCC
Q 039124 205 SIFFTDTS 212 (259)
Q Consensus 205 ~IyfTDss 212 (259)
.||++|..
T Consensus 318 ~Lyv~~d~ 325 (331)
T PF07995_consen 318 ALYVSDDS 325 (331)
T ss_dssp EEEEEE-T
T ss_pred eEEEEECC
Confidence 99999863
No 40
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.94 E-value=0.013 Score=57.60 Aligned_cols=88 Identities=20% Similarity=0.279 Sum_probs=51.9
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEc-C-------------------CCeEEEEeCCCc-------cEEEEEEeecCc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGL-A-------------------DGRIVRWMGENV-------GWETFAIVTSNW 123 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~-~-------------------~G~I~ri~~~~~-------~~~~fa~~~~~~ 123 (259)
|..+.--.+..||++.+++....+|+.+ . .|.|+|+.+++. .|..|.......
T Consensus 341 A~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~ 420 (524)
T PF05787_consen 341 ADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPT 420 (524)
T ss_pred cccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcc
Confidence 3444445799999999999543455543 2 258999998765 455554432110
Q ss_pred cccccccCccccccccccccCcCCCcceEEEeCCCCcEEEE-eCC
Q 039124 124 SEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIA-DAY 167 (259)
Q Consensus 124 ~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~Va-D~~ 167 (259)
.. .... ...........|-+|+|++ .|+|||+ |..
T Consensus 421 ~~--~~~~------~~~~~~~~f~sPDNL~~d~-~G~LwI~eD~~ 456 (524)
T PF05787_consen 421 DA--SGNG------SNKCDDNGFASPDNLAFDP-DGNLWIQEDGG 456 (524)
T ss_pred cc--cccc------cCcccCCCcCCCCceEECC-CCCEEEEeCCC
Confidence 00 0000 0011234566799999999 4999997 443
No 41
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.84 E-value=0.0084 Score=58.46 Aligned_cols=128 Identities=22% Similarity=0.322 Sum_probs=76.4
Q ss_pred CCeEEccCCCCCceeEEEcC-CCCEEEEEcCC----------------CeEEEEeCCCc-------cEEEEEEeecCccc
Q 039124 70 TGKLEFVDEVFGPESLEFDG-LGRGPYTGLAD----------------GRIVRWMGENV-------GWETFAIVTSNWSE 125 (259)
Q Consensus 70 ~~e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~----------------G~I~ri~~~~~-------~~~~fa~~~~~~~~ 125 (259)
.|..+.--.+..||+|++.+ .|.+|++-+.+ |.|+||.+.+. .|..|...+...
T Consensus 407 AA~~lGAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~-- 484 (616)
T COG3211 407 AADKLGATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPS-- 484 (616)
T ss_pred HHHHhCCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcc--
Confidence 35666666789999999998 45544443333 46999988765 577765432211
Q ss_pred cccccCccccccccccccCcCCCcceEEEeCCCCcEEEE-eCCC--------ceEEE---ECCCCeEEEeeecCCCCCcc
Q 039124 126 KLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIA-DAYY--------GLLVV---GSKGGLATPLATQAGGKPIL 193 (259)
Q Consensus 126 ~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~Va-D~~~--------Gl~~v---~~~gg~~~~l~~~~~g~pl~ 193 (259)
..+++. + ..+. ...++.|-+|+||+. |+|||+ |... |+..+ +++++++......--| -
T Consensus 485 -~~~~~~-~---~~~~-~~~f~~PDnl~fD~~-GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g---~ 554 (616)
T COG3211 485 -VLEGGA-S---ANIN-ANWFNSPDNLAFDPW-GRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIG---C 554 (616)
T ss_pred -cccccc-c---cCcc-cccccCCCceEECCC-CCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCc---c
Confidence 111111 0 0011 245677999999995 999996 4332 45444 4555655554432111 1
Q ss_pred ccccEEEcCCCc-EEEe
Q 039124 194 FANDLDVHKNGS-IFFT 209 (259)
Q Consensus 194 ~~Ndl~vd~dG~-IyfT 209 (259)
-.-+.++.|||+ +|+.
T Consensus 555 E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 555 EFTGPCFSPDGKTLFVN 571 (616)
T ss_pred eeecceeCCCCceEEEE
Confidence 345788999987 6665
No 42
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.80 E-value=0.11 Score=48.51 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccC-cCCCcce---EEEeCCCCcEEEEe
Q 039124 90 LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEK-WCGRPLG---LRFNKDTGDLYIAD 165 (259)
Q Consensus 90 ~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~grPlG---l~~d~~~G~L~VaD 165 (259)
+|+.+|++.. |.|..++..+..... .. .++. .- ..+. ..=||-| ++++++++++||+.
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~-~~---~~~~-~~------------~~~~~~~wrP~g~q~ia~~~dg~~lyV~~ 266 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKF-LP---AIEA-FT------------EAEKADGWRPGGWQQVAYHRARDRIYLLA 266 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCccee-cc---eeee-cc------------ccccccccCCCcceeEEEcCCCCEEEEEe
Confidence 7898999988 999999854432111 00 0000 00 0000 0124555 99998778999953
Q ss_pred ----------CCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc--EEEecCCCCCCcccceeeeeccCCCceE
Q 039124 166 ----------AYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS--IFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 166 ----------~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~--IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
....+..+|.+++++..-+. -| ..+.++++++||+ +|.|+.. ++.|
T Consensus 267 ~~~~~~thk~~~~~V~ViD~~t~kvi~~i~--vG---~~~~~iavS~Dgkp~lyvtn~~-----------------s~~V 324 (352)
T TIGR02658 267 DQRAKWTHKTASRFLFVVDAKTGKRLRKIE--LG---HEIDSINVSQDAKPLLYALSTG-----------------DKTL 324 (352)
T ss_pred cCCccccccCCCCEEEEEECCCCeEEEEEe--CC---CceeeEEECCCCCeEEEEeCCC-----------------CCcE
Confidence 22459999999875332221 12 3689999999998 6666643 3468
Q ss_pred EEEeCCCCcEEEec
Q 039124 234 LRYDPPTKSNSYCV 247 (259)
Q Consensus 234 ~rydp~tg~~~vl~ 247 (259)
..+|..+++...-+
T Consensus 325 sViD~~t~k~i~~i 338 (352)
T TIGR02658 325 YIFDAETGKELSSV 338 (352)
T ss_pred EEEECcCCeEEeee
Confidence 88888777544333
No 43
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.021 Score=51.72 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=67.5
Q ss_pred CCCceeEEEcCCCCEEEEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 79 VFGPESLEFDGLGRGPYTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
-.|=|++|||+++..+|+.-.. =+|+.++........- .. -+ .+-.+.+. .-.--|+.|++
T Consensus 180 N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~-~~--------~~----~~~~~~~f----~~DvSgl~~~~ 242 (316)
T COG3204 180 NKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH-AS--------LD----PTADRDLF----VLDVSGLEFNA 242 (316)
T ss_pred CcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc-cc--------cC----cccccceE----eeccccceecC
Confidence 4578999999977667776433 3466665433211110 00 00 00001111 11123899998
Q ss_pred CCCcEEEE-eCCCceEEEECCCCeEEEee--ecCCC--CCccccccEEEcCCCcEEEec
Q 039124 157 DTGDLYIA-DAYYGLLVVGSKGGLATPLA--TQAGG--KPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 157 ~~G~L~Va-D~~~Gl~~v~~~gg~~~~l~--~~~~g--~pl~~~Ndl~vd~dG~IyfTD 210 (259)
.++.|+|- |-..-|+++|.+|+.++.+. ....| ..+..+.|+++|++|+||++-
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred CCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 78899985 44445899999887544432 12222 235678999999999999864
No 44
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.62 E-value=0.12 Score=49.57 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=68.3
Q ss_pred eeEEEcCCCCEE-EEEcCCCe--EEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGRGP-YTGLADGR--IVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~~~-yt~~~~G~--I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+++|.++|+.+ |+...+|. |+.++.++....... ...+.....++.++ |
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt--------------------------~~~~~~~~p~wSpD-G 317 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT--------------------------RHRAIDTEPSWHPD-G 317 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc--------------------------cCCCCccceEECCC-C
Confidence 367899998844 56666664 888887665322210 00112234577775 6
Q ss_pred c-EEEE-eCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 D-LYIA-DAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 ~-L~Va-D~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
+ |+++ +.. ..|+.++.++++.+.+.. ++. .....++++||+ |||+.... +..+|+
T Consensus 318 ~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g~---~~~~~~~SpDG~~l~~~~~~~---------------g~~~I~ 377 (448)
T PRK04792 318 KSLIFTSERGGKPQIYRVNLASGKVSRLTF--EGE---QNLGGSITPDGRSMIMVNRTN---------------GKFNIA 377 (448)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEEec--CCC---CCcCeeECCCCCEEEEEEecC---------------CceEEE
Confidence 5 4333 221 249999998887666642 221 123468899997 77765321 223677
Q ss_pred EEeCCCCcEEEec
Q 039124 235 RYDPPTKSNSYCV 247 (259)
Q Consensus 235 rydp~tg~~~vl~ 247 (259)
++|+++++.+.+.
T Consensus 378 ~~dl~~g~~~~lt 390 (448)
T PRK04792 378 RQDLETGAMQVLT 390 (448)
T ss_pred EEECCCCCeEEcc
Confidence 7777777666554
No 45
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.61 E-value=0.22 Score=47.56 Aligned_cols=121 Identities=16% Similarity=0.082 Sum_probs=71.7
Q ss_pred eeEEEcCCCC-EEEEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGR-GPYTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~-~~yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+++|.++|+ ++|++..+| +|+.++.++..-.... + . ...+.....++.++ |
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~---------l-------------t--~~~~~~~~p~wSPD-G 338 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL---------L-------------T--KKYRNSSCPAWSPD-G 338 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE---------e-------------c--cCCCCccceeECCC-C
Confidence 4678999997 566766555 5777665321100000 0 0 00112234577885 6
Q ss_pred cEE-EEeCC---CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 DLY-IADAY---YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 ~L~-VaD~~---~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
+.+ ++... ..|+.+|.++++.+.+... ++ ...+....+||+ |+|+-.. .....||
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~----~~~~p~wSpDG~~L~f~~~~---------------~g~~~L~ 398 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PE----NKESPSWAIDSLHLVYSAGN---------------SNESELY 398 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CC----CccceEECCCCCEEEEEECC---------------CCCceEE
Confidence 543 33222 2488899999987766532 11 245678899997 7776432 2235799
Q ss_pred EEeCCCCcEEEecC
Q 039124 235 RYDPPTKSNSYCVR 248 (259)
Q Consensus 235 rydp~tg~~~vl~~ 248 (259)
.+|.++++.+.+..
T Consensus 399 ~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 399 LISLITKKTRKIVI 412 (428)
T ss_pred EEECCCCCEEEeec
Confidence 99998888877764
No 46
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.53 E-value=0.19 Score=48.25 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=68.8
Q ss_pred eEEEcCCCC-EEEEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGR-GPYTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~-~~yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+ ++|+...++ +|+.++..+.....+ . ...+.-...++.++ |+
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-----------t---------------~~~g~~~~~~wSPD-G~ 274 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-----------T---------------SFPGINGAPRFSPD-GK 274 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-----------c---------------CCCCCcCCeeECCC-CC
Confidence 578999987 456665544 588888765422111 0 00111224678885 65
Q ss_pred -EEEEeCCC---ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 161 -LYIADAYY---GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 161 -L~VaD~~~---Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
|+++.... .|+.++.++++.+.+... . ......+.++||+ |+|+-.. ...-.||+
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~-~----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~ 334 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTRITRH-R----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYR 334 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEECccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEE
Confidence 65542222 399999998877766532 1 1234567889997 6665321 11236888
Q ss_pred EeCCCCcEEEe
Q 039124 236 YDPPTKSNSYC 246 (259)
Q Consensus 236 ydp~tg~~~vl 246 (259)
+|.++++.+.+
T Consensus 335 ~dl~~g~~~~L 345 (448)
T PRK04792 335 VNLASGKVSRL 345 (448)
T ss_pred EECCCCCEEEE
Confidence 88877776655
No 47
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.53 E-value=0.035 Score=50.84 Aligned_cols=102 Identities=18% Similarity=0.120 Sum_probs=66.5
Q ss_pred CCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC
Q 039124 69 VTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR 148 (259)
Q Consensus 69 ~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr 148 (259)
..-|.+..| +..|||+.| .+|++++.+...|+|.+++++.+..+.. | ...|+
T Consensus 193 ~s~evl~~G-LsmPhSPRW-hdgrLwvldsgtGev~~vD~~~G~~e~V-----------a---------------~vpG~ 244 (335)
T TIGR03032 193 PSGEVVASG-LSMPHSPRW-YQGKLWLLNSGRGELGYVDPQAGKFQPV-----------A---------------FLPGF 244 (335)
T ss_pred CCCCEEEcC-ccCCcCCcE-eCCeEEEEECCCCEEEEEcCCCCcEEEE-----------E---------------ECCCC
Confidence 445667666 999999999 5899999999999999999974433331 1 23578
Q ss_pred cceEEEeCCCCcEEEE-eC--------------------CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCC
Q 039124 149 PLGLRFNKDTGDLYIA-DA--------------------YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKN 203 (259)
Q Consensus 149 PlGl~~d~~~G~L~Va-D~--------------------~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d 203 (259)
|.||.|. |++.|+ -+ .-||..||..+|.+..... ++|. ..-.-|++|-|+
T Consensus 245 ~rGL~f~---G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~-feg~-v~EifdV~vLPg 315 (335)
T TIGR03032 245 TRGLAFA---GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLR-FEGV-IEEIYDVAVLPG 315 (335)
T ss_pred Cccccee---CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEE-eCCc-eeEEEEEEEecC
Confidence 9999997 455443 21 1268888888886443332 3331 233445555443
No 48
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.034 Score=48.22 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=64.4
Q ss_pred CCcceEEEeCCCCcEEEEeCCCceEEEECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeee
Q 039124 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILL 225 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~ 225 (259)
|.--||+.|. .+|+..|...-|..-||++=. ...+....+|.|+...|.|.-- ||.+|..-.-+
T Consensus 131 GeGWgLt~d~--~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t------------ 195 (262)
T COG3823 131 GEGWGLTSDD--KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQT------------ 195 (262)
T ss_pred CcceeeecCC--cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeee------------
Confidence 4446888875 479888887778888987521 2223234689999999999876 78877654321
Q ss_pred ccCCCceEEEEeCCCCcEEEec-------------CCCCCcceeEEC
Q 039124 226 EGESTGRLLRYDPPTKSNSYCV-------------RWLGFSKWSTII 259 (259)
Q Consensus 226 e~~~~GrL~rydp~tg~~~vl~-------------~~L~~pNGval~ 259 (259)
-|+.|+||++|++...+ ++.-..||||.+
T Consensus 196 -----~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~ 237 (262)
T COG3823 196 -----TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHD 237 (262)
T ss_pred -----cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeec
Confidence 27888999888876553 244578898864
No 49
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.44 E-value=0.029 Score=52.79 Aligned_cols=97 Identities=12% Similarity=0.015 Sum_probs=52.8
Q ss_pred eEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC--CC---cccceeeee
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR--YN---RVDHFFILL 225 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~--~~---~~~~~~~~~ 225 (259)
|..+.+++..+|-......|++||.++.+.+.+....++ .+---...++.|++.++..-..+ +. ..+++.+.+
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDD--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TT--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcc--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 555566555664344456799999999876666543332 11112233466888665533221 21 123566788
Q ss_pred ccCCCceEEEEeCCCCcEEEecCC
Q 039124 226 EGESTGRLLRYDPPTKSNSYCVRW 249 (259)
Q Consensus 226 e~~~~GrL~rydp~tg~~~vl~~~ 249 (259)
+.++..||+++|.+||+.+++.+.
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~~ 186 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFED 186 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEEE
T ss_pred hhCCCceEEEEECCCCceeEEEec
Confidence 899999999999999999998754
No 50
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.39 E-value=0.0068 Score=35.34 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=24.6
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEE
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRW 106 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri 106 (259)
+..|.++++|++|+++.++..+++|+++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4689999999999988899999999874
No 51
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.32 E-value=0.051 Score=53.36 Aligned_cols=104 Identities=16% Similarity=0.272 Sum_probs=64.1
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCCC--------------------ceEEEECCCC-------eEEEeeecC---------
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAYY--------------------GLLVVGSKGG-------LATPLATQA--------- 187 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~~--------------------Gl~~v~~~gg-------~~~~l~~~~--------- 187 (259)
..+.||-|+.+++.+|.+|++-... +|++++++++ ..+.++..-
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4577999999999889999974221 3899988766 334433211
Q ss_pred ----CCCCccccccEEEcCCCcEEE-ecCCCCCCc------ccceeeeeccCCCceEEEEeCCCCcEEEecC
Q 039124 188 ----GGKPILFANDLDVHKNGSIFF-TDTSKRYNR------VDHFFILLEGESTGRLLRYDPPTKSNSYCVR 248 (259)
Q Consensus 188 ----~g~pl~~~Ndl~vd~dG~Iyf-TDss~~~~~------~~~~~~~~e~~~~GrL~rydp~tg~~~vl~~ 248 (259)
+...+..|+.|+++++|+||+ +|.+..-.. ....+.+......- ++.+++.+++++.++.
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~ 497 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLV 497 (524)
T ss_pred cCcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeecc
Confidence 234688999999999999887 555543110 00111111111111 5566777777777653
No 52
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.31 E-value=0.15 Score=48.38 Aligned_cols=156 Identities=17% Similarity=0.254 Sum_probs=85.2
Q ss_pred CCCCCcccCCCeEEccCCCCCceeEEEcCC-CCEEEEEcCCC-------eEEEEeCCCc-cEEEEEEeecCcc-----cc
Q 039124 61 PRDNLSRLVTGKLEFVDEVFGPESLEFDGL-GRGPYTGLADG-------RIVRWMGENV-GWETFAIVTSNWS-----EK 126 (259)
Q Consensus 61 ~~~~n~~L~~~e~l~~~~l~gPE~ia~D~~-G~~~yt~~~~G-------~I~ri~~~~~-~~~~fa~~~~~~~-----~~ 126 (259)
....|+.-.+.|+...| +..|-+++|++. |. +||..+.- .+-.+...+. +|=- .....+-. +.
T Consensus 221 ~~~~d~p~~~~~i~s~G-~RN~qGl~w~P~tg~-Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~-~~~G~~~~g~~~~~~ 297 (399)
T COG2133 221 IIPADNPFPNSEIWSYG-HRNPQGLAWHPVTGA-LWTTEHGPDALRGPDELNSIRPGKNYGWPY-AYFGQNYDGRAIPDG 297 (399)
T ss_pred ccccCCCCCCcceEEec-cCCccceeecCCCCc-EEEEecCCCcccCcccccccccCCccCCce-eccCcccCccccCCC
Confidence 34455556667777666 889999999997 66 66654433 1223322211 1111 11000000 00
Q ss_pred ccccCccccccccccccCcCCCcceEEEeCCC------CcEEEEeCCC-ceEEEECCCCeEEEeeecCCCCCccccccEE
Q 039124 127 LCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT------GDLYIADAYY-GLLVVGSKGGLATPLATQAGGKPILFANDLD 199 (259)
Q Consensus 127 ~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~------G~L~VaD~~~-Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~ 199 (259)
.+.... ..|.-+|. .| -.|+||+|-..+ |.|+|+-... .+++++++++....+...+.+.-..++-||+
T Consensus 298 ~~~~~~-~~p~~~~~-~h--~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~ 373 (399)
T COG2133 298 TVVAGA-IQPVYTWA-PH--IAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVA 373 (399)
T ss_pred cccccc-cCCceeec-cc--cccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceE
Confidence 000000 00111221 12 347999998522 5888876544 4788888877212222212211116899999
Q ss_pred EcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 200 VHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 200 vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
+++||-||++|.. .+|+|||+...
T Consensus 374 v~~DGallv~~D~----------------~~g~i~Rv~~~ 397 (399)
T COG2133 374 VAPDGALLVLTDQ----------------GDGRILRVSYA 397 (399)
T ss_pred ECCCCeEEEeecC----------------CCCeEEEecCC
Confidence 9999999999863 36899999875
No 53
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.26 E-value=0.47 Score=43.85 Aligned_cols=68 Identities=19% Similarity=0.326 Sum_probs=41.6
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
+++++ ++.+|++..+|.|+.++...+. ..+... . . ....+ +..++ ++.+||
T Consensus 60 ~p~v~--~~~v~v~~~~g~v~a~d~~tG~-~~W~~~-------~-------------~-~~~~~---~p~v~--~~~v~v 110 (377)
T TIGR03300 60 QPAVA--GGKVYAADADGTVVALDAETGK-RLWRVD-------L-------------D-ERLSG---GVGAD--GGLVFV 110 (377)
T ss_pred ceEEE--CCEEEEECCCCeEEEEEccCCc-Eeeeec-------C-------------C-CCccc---ceEEc--CCEEEE
Confidence 45554 4568999999999999975442 111110 0 0 01122 23444 378998
Q ss_pred EeCCCceEEEECCCCeE
Q 039124 164 ADAYYGLLVVGSKGGLA 180 (259)
Q Consensus 164 aD~~~Gl~~v~~~gg~~ 180 (259)
.+....++.+|.++|+.
T Consensus 111 ~~~~g~l~ald~~tG~~ 127 (377)
T TIGR03300 111 GTEKGEVIALDAEDGKE 127 (377)
T ss_pred EcCCCEEEEEECCCCcE
Confidence 87666699999987753
No 54
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.26 E-value=0.28 Score=46.83 Aligned_cols=117 Identities=14% Similarity=0.070 Sum_probs=69.6
Q ss_pred eEEEcCCCC--EEEEEcC--CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 84 SLEFDGLGR--GPYTGLA--DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 84 ~ia~D~~G~--~~yt~~~--~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
++.|.++|+ ++|++.. +..|+.++..++..+.++ ...|.....++.++ |
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--------------------------~~~g~~~~~~~SPD-G 244 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--------------------------SSQGMLVVSDVSKD-G 244 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--------------------------cCCCcEEeeEECCC-C
Confidence 678999986 4556665 356899888665322211 01122223457775 5
Q ss_pred -cEEEEeCC---CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 -DLYIADAY---YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 -~L~VaD~~---~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
.|++.... ..|+.++.+++..+.+... .+. --.....|||+ |||+.... ..-+||
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~-~~~----d~~p~~SPDG~~I~F~Sdr~---------------g~~~Iy 304 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNY-PGI----DVNGNFVEDDKRIVFVSDRL---------------GYPNIF 304 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccC-CCc----cCccEECCCCCEEEEEECCC---------------CCceEE
Confidence 45443322 2499999988877777542 221 11336889996 88875431 223788
Q ss_pred EEeCCCCcEEEec
Q 039124 235 RYDPPTKSNSYCV 247 (259)
Q Consensus 235 rydp~tg~~~vl~ 247 (259)
++|.++|+.+.+.
T Consensus 305 ~~dl~~g~~~rlt 317 (419)
T PRK04043 305 MKKLNSGSVEQVV 317 (419)
T ss_pred EEECCCCCeEeCc
Confidence 8888888775554
No 55
>PRK03629 tolB translocation protein TolB; Provisional
Probab=96.22 E-value=0.38 Score=45.85 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=69.1
Q ss_pred eEEEcCCCCEE-EEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGRGP-YTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~~~-yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+.+ |+...+| .|+.++.++.....+ . ..........+.++ |+
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-----------t---------------~~~~~~~~~~wSPD-G~ 299 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-----------T---------------DGRSNNTEPTWFPD-SQ 299 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-----------c---------------CCCCCcCceEECCC-CC
Confidence 57899999744 4545454 588888766532221 0 00112345688885 66
Q ss_pred EE--EEeCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 161 LY--IADAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 161 L~--VaD~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
.+ ++|.. ..|+.++.+++..+.+... + .......+.+||+ |+|+.... ....++.
T Consensus 300 ~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~--~---~~~~~~~~SpDG~~Ia~~~~~~---------------g~~~I~~ 359 (429)
T PRK03629 300 NLAYTSDQAGRPQVYKVNINGGAPQRITWE--G---SQNQDADVSSDGKFMVMVSSNG---------------GQQHIAK 359 (429)
T ss_pred EEEEEeCCCCCceEEEEECCCCCeEEeecC--C---CCccCEEECCCCCEEEEEEccC---------------CCceEEE
Confidence 33 34432 2589999998876666421 2 1234678899997 65654321 1235777
Q ss_pred EeCCCCcEEEecC
Q 039124 236 YDPPTKSNSYCVR 248 (259)
Q Consensus 236 ydp~tg~~~vl~~ 248 (259)
+|.++++.+.|.+
T Consensus 360 ~dl~~g~~~~Lt~ 372 (429)
T PRK03629 360 QDLATGGVQVLTD 372 (429)
T ss_pred EECCCCCeEEeCC
Confidence 7777777666543
No 56
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.22 E-value=0.38 Score=45.72 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=68.3
Q ss_pred ceeEEEcCCCC-EEEEEcC--CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 82 PESLEFDGLGR-GPYTGLA--DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 82 PE~ia~D~~G~-~~yt~~~--~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-.+++|.++|+ ++|++.. +..|+.++..++....+. ...+.-...++.++
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~--------------------------~~~g~~~~~~~SPD- 256 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG--------------------------NFPGMTFAPRFSPD- 256 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--------------------------cCCCcccCcEECCC-
Confidence 34678999887 5566643 357999988665322110 01122246678885
Q ss_pred Cc-EEEE-eC--CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceE
Q 039124 159 GD-LYIA-DA--YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 159 G~-L~Va-D~--~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
|+ |+++ +. ...|+.+|.+++..+.+... .+ .......++||+ |+|+-... ...+|
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~-~~----~~~~~~~spDG~~i~f~s~~~---------------g~~~I 316 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS-PA----IDTSPSYSPDGSQIVFESDRS---------------GSPQL 316 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCC-CC----ccCceeEcCCCCEEEEEECCC---------------CCCeE
Confidence 65 4433 22 23499999998877666532 11 234578889987 66653211 12356
Q ss_pred EEEeCCCCcEEEec
Q 039124 234 LRYDPPTKSNSYCV 247 (259)
Q Consensus 234 ~rydp~tg~~~vl~ 247 (259)
|.+|..+++.+.+.
T Consensus 317 y~~d~~g~~~~~lt 330 (435)
T PRK05137 317 YVMNADGSNPRRIS 330 (435)
T ss_pred EEEECCCCCeEEee
Confidence 66666655555543
No 57
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.18 E-value=0.032 Score=51.08 Aligned_cols=88 Identities=26% Similarity=0.336 Sum_probs=59.3
Q ss_pred CCCcceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCC-CCCcc--cc-
Q 039124 146 CGRPLGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSK-RYNRV--DH- 220 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~-~~~~~--~~- 220 (259)
...|.+-++.. |+||++|++.| +.++|+++|..+.++ .++| ++.+|++. |++.|.-+|. +-+.. ..
T Consensus 202 LsmPhSPRWhd--grLwvldsgtGev~~vD~~~G~~e~Va-~vpG----~~rGL~f~--G~llvVgmSk~R~~~~f~glp 272 (335)
T TIGR03032 202 LSMPHSPRWYQ--GKLWLLNSGRGELGYVDPQAGKFQPVA-FLPG----FTRGLAFA--GDFAFVGLSKLRESRVFGGLP 272 (335)
T ss_pred ccCCcCCcEeC--CeEEEEECCCCEEEEEcCCCCcEEEEE-ECCC----CCccccee--CCEEEEEeccccCCCCcCCCc
Confidence 45688888983 89999999988 899999988777775 4665 78999999 8766554443 21100 00
Q ss_pred eeeeeccCCCceEEEEeCCCCcE
Q 039124 221 FFILLEGESTGRLLRYDPPTKSN 243 (259)
Q Consensus 221 ~~~~~e~~~~GrL~rydp~tg~~ 243 (259)
+.+-++....| |+.+|..||++
T Consensus 273 l~~~l~~~~CG-v~vidl~tG~v 294 (335)
T TIGR03032 273 IEERLDALGCG-VAVIDLNSGDV 294 (335)
T ss_pred hhhhhhhhccc-EEEEECCCCCE
Confidence 11112223344 88899998875
No 58
>PRK04922 tolB translocation protein TolB; Provisional
Probab=96.05 E-value=0.57 Score=44.51 Aligned_cols=117 Identities=22% Similarity=0.202 Sum_probs=66.3
Q ss_pred eEEEcCCCCEE-EEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGRGP-YTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~~~-yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+.+ |+...+| .|+.++.++.....+ + ...+.....+|.++ |+
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l--t------------------------~~~~~~~~~~~spD-G~ 304 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL--T------------------------NHFGIDTEPTWAPD-GK 304 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC--c------------------------cCCCCccceEECCC-CC
Confidence 57898988744 5544444 588888766532211 0 00112234678885 65
Q ss_pred -EEE-EeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 161 -LYI-ADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 161 -L~V-aD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
|++ +|... .|+.++.++++.+.+.. .+ ......++.+||+ |+++.... ...+|+.
T Consensus 305 ~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--~g---~~~~~~~~SpDG~~Ia~~~~~~---------------~~~~I~v 364 (433)
T PRK04922 305 SIYFTSDRGGRPQIYRVAASGGSAERLTF--QG---NYNARASVSPDGKKIAMVHGSG---------------GQYRIAV 364 (433)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEEeec--CC---CCccCEEECCCCCEEEEEECCC---------------CceeEEE
Confidence 433 33222 38999988877666642 22 1234688999997 77764321 1125666
Q ss_pred EeCCCCcEEEec
Q 039124 236 YDPPTKSNSYCV 247 (259)
Q Consensus 236 ydp~tg~~~vl~ 247 (259)
+|..+++.+.+.
T Consensus 365 ~d~~~g~~~~Lt 376 (433)
T PRK04922 365 MDLSTGSVRTLT 376 (433)
T ss_pred EECCCCCeEECC
Confidence 666666555443
No 59
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.02 E-value=0.59 Score=44.12 Aligned_cols=117 Identities=13% Similarity=0.146 Sum_probs=67.6
Q ss_pred eeEEEcCCCCE-EEEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGRG-PYTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~~-~yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+++|.++|+. +|++..+ ..|+.++.+++....+ . ...+.....++.++ |
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-----------~---------------~~~g~~~~~~~SpD-G 254 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-----------T---------------NFEGLNGAPAWSPD-G 254 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-----------c---------------CCCCCcCCeEECCC-C
Confidence 57789999874 4776554 3588888765522211 0 01122235788885 6
Q ss_pred c-EEEE-eCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 D-LYIA-DAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 ~-L~Va-D~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
+ |+++ +.. ..|+.+|.+++..+.+... .+ .......++||+ |||+-.. .+..+||
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~~spDg~~i~f~s~~---------------~g~~~iy 314 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTNH-PA----IDTEPFWGKDGRTLYFTSDR---------------GGKPQIY 314 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEcccC-CC----CcCCeEECCCCCEEEEEECC---------------CCCceEE
Confidence 5 4433 222 2489999998877666532 11 223467788887 7776321 1223577
Q ss_pred EEeCCCCcEEEe
Q 039124 235 RYDPPTKSNSYC 246 (259)
Q Consensus 235 rydp~tg~~~vl 246 (259)
++|..+++.+.+
T Consensus 315 ~~d~~~g~~~~l 326 (430)
T PRK00178 315 KVNVNGGRAERV 326 (430)
T ss_pred EEECCCCCEEEe
Confidence 777766666544
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.6 Score=42.48 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=75.4
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCC---CccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGE---NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~---~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
+.++-..|+|++|-++-++.....|.-++.. .+.+.+|... ....-+-..|.|.
T Consensus 140 ~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-----------------------~~~~~ew~~l~FS 196 (311)
T KOG1446|consen 140 LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT-----------------------DNDEAEWTDLEFS 196 (311)
T ss_pred cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC-----------------------CCCccceeeeEEc
Confidence 6778889999999855555666567666642 2223333221 0112234688999
Q ss_pred CCCCcEE-EEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 156 KDTGDLY-IADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 156 ~~~G~L~-VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
++ |..+ ++....-++.+|.=.|.+..=.+... ...+.|-+-.+.|||...++-+. .|+|+
T Consensus 197 ~d-GK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~-~~~~~~~~a~ftPds~Fvl~gs~-----------------dg~i~ 257 (311)
T KOG1446|consen 197 PD-GKSILLSTNASFIYLLDAFDGTVKSTFSGYP-NAGNLPLSATFTPDSKFVLSGSD-----------------DGTIH 257 (311)
T ss_pred CC-CCEEEEEeCCCcEEEEEccCCcEeeeEeecc-CCCCcceeEEECCCCcEEEEecC-----------------CCcEE
Confidence 85 6554 45444447778766664322222221 23445668888999998777543 46777
Q ss_pred EEeCCCCcEEEecCC
Q 039124 235 RYDPPTKSNSYCVRW 249 (259)
Q Consensus 235 rydp~tg~~~vl~~~ 249 (259)
-|+.+||+..-..++
T Consensus 258 vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRG 272 (311)
T ss_pred EEEcCCCcEeeEecC
Confidence 777776654443333
No 61
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.85 E-value=0.58 Score=44.45 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=55.2
Q ss_pred eEEEcCCCC-EEEEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGR-GPYTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~-~~yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+ ++|++..+ ..|++++..++....+ +. ..+.-...+|.++ |+
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-----------~~---------------~~g~~~~~~~SpD-G~ 260 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-----------AS---------------FRGINGAPSFSPD-GR 260 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-----------cc---------------CCCCccCceECCC-CC
Confidence 568989887 45565443 4688888765522211 10 0111235688885 65
Q ss_pred -EEEE-eCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 161 -LYIA-DAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 161 -L~Va-D~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
|+++ +.. ..|+.++.++++.+.+... .+ .....++++||+ |+|+
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~-~~----~~~~~~~spDG~~l~f~ 309 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNH-FG----IDTEPTWAPDGKSIYFT 309 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccC-CC----CccceEECCCCCEEEEE
Confidence 5443 322 2399999998877666432 11 234578899997 6665
No 62
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=95.85 E-value=0.026 Score=35.08 Aligned_cols=39 Identities=18% Similarity=0.070 Sum_probs=31.8
Q ss_pred EEccCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCc
Q 039124 73 LEFVDEVFGPESLEFDGL-GRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~-G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.+....+..|.++++|+. +.+||++...+.|.+.+-++.
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 355667999999999994 568889999999999887654
No 63
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.82 E-value=0.92 Score=43.21 Aligned_cols=117 Identities=12% Similarity=0.083 Sum_probs=66.1
Q ss_pred eeEEEcCCCC-EEEEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGR-GPYTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~-~~yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+++|.++|+ +.|+...+ ..|+.++.+++..... . ...+.-...++.++ |
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-----------~---------------~~~~~~~~~~~SPD-G 254 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-----------A---------------SFPRHNGAPAFSPD-G 254 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-----------c---------------CCCCCcCCeEECCC-C
Confidence 4789999986 44665433 3577777655421110 0 00111224688985 6
Q ss_pred c-EEEEeCCC---ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 D-LYIADAYY---GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 ~-L~VaD~~~---Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
+ |+++.... .|+.+|.+++..+.+.... . ........|||+ |+|+-... ..-+||
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-~----~~~~~~wSPDG~~I~f~s~~~---------------g~~~Iy 314 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-S----NNTEPTWFPDSQNLAYTSDQA---------------GRPQVY 314 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-C----CcCceEECCCCCEEEEEeCCC---------------CCceEE
Confidence 5 54442222 4899999988777665321 1 245678899998 65543211 112577
Q ss_pred EEeCCCCcEEEe
Q 039124 235 RYDPPTKSNSYC 246 (259)
Q Consensus 235 rydp~tg~~~vl 246 (259)
++|.++++.+.+
T Consensus 315 ~~d~~~g~~~~l 326 (429)
T PRK03629 315 KVNINGGAPQRI 326 (429)
T ss_pred EEECCCCCeEEe
Confidence 777766665554
No 64
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.80 E-value=0.48 Score=45.56 Aligned_cols=107 Identities=14% Similarity=0.181 Sum_probs=69.8
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.+...+--+++|-++|..+.++..|+.|..|+.......... ..........++|.
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~------------------------l~gH~~~v~~~~f~ 255 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT------------------------LKGHSTYVTSVAFS 255 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE------------------------ecCCCCceEEEEec
Confidence 444566668999999998888999999988887322111100 01112234789999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++ |+++++-.+.+ +...|..+++......... ...+.+++.+||+++.+-+
T Consensus 256 p~-g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs----~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 256 PD-GNLLVSGSDDGTVRIWDVRTGECVRKLKGHS----DGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred CC-CCEEEEecCCCcEEEEeccCCeEEEeeeccC----CceEEEEECCCCCEEEEcC
Confidence 96 78888766666 4445877765332222222 2578999999999888764
No 65
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.80 E-value=0.66 Score=43.78 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=67.0
Q ss_pred eEEEcCCCCEE-EEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGRGP-YTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~~~-yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+.+ |+...+| .|+.++.++.....+ + ...+......|.++ |+
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l--t------------------------~~~~~~~~~~~spD-g~ 299 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV--T------------------------NHPAIDTEPFWGKD-GR 299 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc--c------------------------cCCCCcCCeEECCC-CC
Confidence 57899998755 4554454 688888776532221 0 00111234567775 54
Q ss_pred -EEEE-eCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 161 -LYIA-DAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 161 -L~Va-D~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
|+++ +.. ..|+.++.++++.+.+... + .......+++||+ |+|+.... ..-+|+.
T Consensus 300 ~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~---~~~~~~~~Spdg~~i~~~~~~~---------------~~~~l~~ 359 (430)
T PRK00178 300 TLYFTSDRGGKPQIYKVNVNGGRAERVTFV--G---NYNARPRLSADGKTLVMVHRQD---------------GNFHVAA 359 (430)
T ss_pred EEEEEECCCCCceEEEEECCCCCEEEeecC--C---CCccceEECCCCCEEEEEEccC---------------CceEEEE
Confidence 5443 322 2499999888876666422 2 1223467788887 77765321 1124777
Q ss_pred EeCCCCcEEEecC
Q 039124 236 YDPPTKSNSYCVR 248 (259)
Q Consensus 236 ydp~tg~~~vl~~ 248 (259)
+|.++++.+.+.+
T Consensus 360 ~dl~tg~~~~lt~ 372 (430)
T PRK00178 360 QDLQRGSVRILTD 372 (430)
T ss_pred EECCCCCEEEccC
Confidence 7777766665543
No 66
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.79 E-value=0.79 Score=42.67 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=64.2
Q ss_pred eEEEcCCCCEE-EEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC-
Q 039124 84 SLEFDGLGRGP-YTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG- 159 (259)
Q Consensus 84 ~ia~D~~G~~~-yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G- 159 (259)
+++|.++|+.+ |+...+ ..|+.++..++...... ...+.....++.++ |
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~--------------------------~~~~~~~~~~~spD-g~ 246 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA--------------------------SFPGMNGAPAFSPD-GS 246 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee--------------------------cCCCCccceEECCC-CC
Confidence 45788888755 444333 46888887654222110 01122345788885 6
Q ss_pred cEEEEeCC---CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 160 DLYIADAY---YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 160 ~L~VaD~~---~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
.|+++... ..|+.++.+++..+.+... .+ ......+.+||+ |+|+.... ...+||.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~----~~~~~~~s~dg~~l~~~s~~~---------------g~~~iy~ 306 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNG-PG----IDTEPSWSPDGKSIAFTSDRG---------------GSPQIYM 306 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCC-CC----CCCCEEECCCCCEEEEEECCC---------------CCceEEE
Confidence 46554332 2499999988876666432 11 122456778886 65543211 1225777
Q ss_pred EeCCCCcEEEec
Q 039124 236 YDPPTKSNSYCV 247 (259)
Q Consensus 236 ydp~tg~~~vl~ 247 (259)
+|..+++.+.+.
T Consensus 307 ~d~~~~~~~~l~ 318 (417)
T TIGR02800 307 MDADGGEVRRLT 318 (417)
T ss_pred EECCCCCEEEee
Confidence 776666655443
No 67
>PTZ00421 coronin; Provisional
Probab=95.78 E-value=0.97 Score=44.14 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=67.7
Q ss_pred EccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 74 EFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
++.|.-..=.+++|++ +++.++++..||.|..|+........ ...+++. ........-..+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~------~~~~~l~------------~L~gH~~~V~~l 131 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ------NISDPIV------------HLQGHTKKVGIV 131 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc------ccCcceE------------EecCCCCcEEEE
Confidence 3444434446899998 78889999999999999865431100 0000000 011112334678
Q ss_pred EEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 153 RFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
+|++..++++++-+..+ |...|.++++..... .+. -...+++++.++|.+.+|-+.
T Consensus 132 ~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l---~~h-~~~V~sla~spdG~lLatgs~ 188 (493)
T PTZ00421 132 SFHPSAMNVLASAGADMVVNVWDVERGKAVEVI---KCH-SDQITSLEWNLDGSLLCTTSK 188 (493)
T ss_pred EeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---cCC-CCceEEEEEECCCCEEEEecC
Confidence 99985345666545555 555588776432222 221 124788999999987776543
No 68
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.73 E-value=0.73 Score=42.89 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=66.3
Q ss_pred eeEEEcCCCCEE-EEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGRGP-YTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~~~-yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+++|.++|+.+ |+...+| .|+.++.++.....+ . ...+.....++.++ |
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-----------~---------------~~~~~~~~~~~s~d-g 289 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-----------T---------------NGPGIDTEPSWSPD-G 289 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC-----------C---------------CCCCCCCCEEECCC-C
Confidence 357888888744 4544444 588888765422211 0 00011123466774 6
Q ss_pred c-EEEE-eCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 D-LYIA-DAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 ~-L~Va-D~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
+ |+++ +.. ..|+.++.++++.+.+... + ......++++||+ |+++... .+..+|+
T Consensus 290 ~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~--~---~~~~~~~~spdg~~i~~~~~~---------------~~~~~i~ 349 (417)
T TIGR02800 290 KSIAFTSDRGGSPQIYMMDADGGEVRRLTFR--G---GYNASPSWSPDGDLIAFVHRE---------------GGGFNIA 349 (417)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEeecC--C---CCccCeEECCCCCEEEEEEcc---------------CCceEEE
Confidence 5 4333 322 2489999888876655422 1 2345678889987 6666542 1234677
Q ss_pred EEeCCCCcEEEec
Q 039124 235 RYDPPTKSNSYCV 247 (259)
Q Consensus 235 rydp~tg~~~vl~ 247 (259)
.+|..+++.+.+.
T Consensus 350 ~~d~~~~~~~~l~ 362 (417)
T TIGR02800 350 VMDLDGGGERVLT 362 (417)
T ss_pred EEeCCCCCeEEcc
Confidence 7777766666554
No 69
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.71 E-value=0.047 Score=49.45 Aligned_cols=62 Identities=16% Similarity=0.340 Sum_probs=46.3
Q ss_pred CcceEEEeCCCCcEEEEeCCC-ceEEEECCC----CeEEEeeecCCCCCccccccEEEcC--CCcEEEecCC
Q 039124 148 RPLGLRFNKDTGDLYIADAYY-GLLVVGSKG----GLATPLATQAGGKPILFANDLDVHK--NGSIFFTDTS 212 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~-Gl~~v~~~g----g~~~~l~~~~~g~pl~~~Ndl~vd~--dG~IyfTDss 212 (259)
..-|+++|+ +|+||.++... .|.+.++++ ...+.++. +.+.+.+|+++.+++ +|.+|+....
T Consensus 187 ~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~--d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 187 QSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ--DPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE---CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred CCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEE--cCceeeccceeeeccccCceEEEEECc
Confidence 346999999 59999999876 599999987 33566663 334589999999999 9999998754
No 70
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.68 E-value=0.57 Score=44.52 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=67.3
Q ss_pred eeEEEcCCCCEE-EEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGRGP-YTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~~~-yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.++.|.++|+.+ |++..+| +|+.++.++.....+. . ..+.-...++.++ |
T Consensus 293 ~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt------------------------~--~~~~~~~~~~Spd-G 345 (435)
T PRK05137 293 TSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS------------------------F--GGGRYSTPVWSPR-G 345 (435)
T ss_pred CceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee------------------------c--CCCcccCeEECCC-C
Confidence 357888888744 5554443 5888877654222210 0 0111234567775 5
Q ss_pred cEE-EEeCC---CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 160 DLY-IADAY---YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 160 ~L~-VaD~~---~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
+.+ ++... ..|+.++.+++..+.+... . ...+..+++||+ |||+-.... .....+||
T Consensus 346 ~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~---~---~~~~p~~spDG~~i~~~~~~~~------------~~~~~~L~ 407 (435)
T PRK05137 346 DLIAFTKQGGGQFSIGVMKPDGSGERILTSG---F---LVEGPTWAPNGRVIMFFRQTPG------------SGGAPKLY 407 (435)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEeccCC---C---CCCCCeECCCCCEEEEEEccCC------------CCCcceEE
Confidence 543 33322 2488889887765544322 1 246788999997 666543211 00124799
Q ss_pred EEeCCCCcEEEec
Q 039124 235 RYDPPTKSNSYCV 247 (259)
Q Consensus 235 rydp~tg~~~vl~ 247 (259)
.+|.++++.+.+.
T Consensus 408 ~~dl~g~~~~~l~ 420 (435)
T PRK05137 408 TVDLTGRNEREVP 420 (435)
T ss_pred EEECCCCceEEcc
Confidence 9999876666553
No 71
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.66 E-value=0.83 Score=38.75 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=68.8
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
+-.++++ ++.+|++..+|.|+.+++..+. ..+...... +... .. ........+-.+-. +|.+
T Consensus 115 ~~~~~~~--~~~~~~~~~~g~l~~~d~~tG~-~~w~~~~~~--------~~~~-----~~-~~~~~~~~~~~~~~-~~~v 176 (238)
T PF13360_consen 115 SSSPAVD--GDRLYVGTSSGKLVALDPKTGK-LLWKYPVGE--------PRGS-----SP-ISSFSDINGSPVIS-DGRV 176 (238)
T ss_dssp -SEEEEE--TTEEEEEETCSEEEEEETTTTE-EEEEEESST--------T-SS--------EEEETTEEEEEECC-TTEE
T ss_pred ccCceEe--cCEEEEEeccCcEEEEecCCCc-EEEEeecCC--------CCCC-----cc-eeeecccccceEEE-CCEE
Confidence 3445554 6678888889999999987652 222221100 0000 00 00111122322223 3689
Q ss_pred EEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCC
Q 039124 162 YIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241 (259)
Q Consensus 162 ~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg 241 (259)
|++.....++.+|.++|+.. +..... ....+....++.+|+++. .|+|+.+|++||
T Consensus 177 ~~~~~~g~~~~~d~~tg~~~-w~~~~~-----~~~~~~~~~~~~l~~~~~------------------~~~l~~~d~~tG 232 (238)
T PF13360_consen 177 YVSSGDGRVVAVDLATGEKL-WSKPIS-----GIYSLPSVDGGTLYVTSS------------------DGRLYALDLKTG 232 (238)
T ss_dssp EEECCTSSEEEEETTTTEEE-EEECSS------ECECEECCCTEEEEEET------------------TTEEEEEETTTT
T ss_pred EEEcCCCeEEEEECCCCCEE-EEecCC-----CccCCceeeCCEEEEEeC------------------CCEEEEEECCCC
Confidence 98877666888899999633 432222 233434456777888872 368999999999
Q ss_pred cEE
Q 039124 242 SNS 244 (259)
Q Consensus 242 ~~~ 244 (259)
++.
T Consensus 233 ~~~ 235 (238)
T PF13360_consen 233 KVV 235 (238)
T ss_dssp EEE
T ss_pred CEE
Confidence 764
No 72
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=95.62 E-value=0.14 Score=45.11 Aligned_cols=91 Identities=21% Similarity=0.264 Sum_probs=59.5
Q ss_pred CCcceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCc-cccccEEEcCC-CcEEEecCCCCCCcccceeee
Q 039124 147 GRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPI-LFANDLDVHKN-GSIFFTDTSKRYNRVDHFFIL 224 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl-~~~Ndl~vd~d-G~IyfTDss~~~~~~~~~~~~ 224 (259)
.+-.||.|.+.+|.||-.....+|+.+|+.+|..+.+....-...+ ...-++++.|- .+|.+-
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv--------------- 91 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV--------------- 91 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE---------------
Confidence 3457999999899999876667799999999987766311111111 11234455442 223322
Q ss_pred eccCCCceEEEEeCCCCcEEEecCCCCCcce
Q 039124 225 LEGESTGRLLRYDPPTKSNSYCVRWLGFSKW 255 (259)
Q Consensus 225 ~e~~~~GrL~rydp~tg~~~vl~~~L~~pNG 255 (259)
..+|.=+|++|+||.+...-..|.++-|
T Consensus 92 ---s~~GqNlR~npdtGav~~~Dg~L~y~~g 119 (236)
T PF14339_consen 92 ---SNTGQNLRLNPDTGAVTIVDGNLAYAAG 119 (236)
T ss_pred ---ccCCcEEEECCCCCCceeccCccccCCC
Confidence 2368899999999986666667887654
No 73
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.53 E-value=0.27 Score=46.01 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=50.4
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeCCCce
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~Gl 170 (259)
++.+|+...+|.++.++...+. .. |... .+.+..+.++ +|.+|+++....+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~-~~------------------------W~~~--~~~~~~~~~~--~~~vy~~~~~g~l 306 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQ-IV------------------------WKRE--YGSVNDFAVD--GGRIYLVDQNDRV 306 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCC-EE------------------------Eeec--CCCccCcEEE--CCEEEEEcCCCeE
Confidence 3457777788899999876542 11 1111 1222334454 4799999887779
Q ss_pred EEEECCCCeEEEeeec-CCCCCccccccEEEcCCCcEEEecC
Q 039124 171 LVVGSKGGLATPLATQ-AGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 171 ~~v~~~gg~~~~l~~~-~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
+.+|.++|+ ..+... ..+.. ....++ -+|.||+.+.
T Consensus 307 ~ald~~tG~-~~W~~~~~~~~~---~~sp~v-~~g~l~v~~~ 343 (394)
T PRK11138 307 YALDTRGGV-ELWSQSDLLHRL---LTAPVL-YNGYLVVGDS 343 (394)
T ss_pred EEEECCCCc-EEEcccccCCCc---ccCCEE-ECCEEEEEeC
Confidence 999999885 333222 12211 122233 3677888764
No 74
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.52 E-value=0.85 Score=42.23 Aligned_cols=152 Identities=19% Similarity=0.157 Sum_probs=83.2
Q ss_pred CCC-cccCCCeEEccCCCCCceeEEEcCCCCEEEEEcCC-CeEEE--EeCCCccEEEEEEeecCccccccccCccccccc
Q 039124 63 DNL-SRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLAD-GRIVR--WMGENVGWETFAIVTSNWSEKLCARGVDSTTAK 138 (259)
Q Consensus 63 ~~n-~~L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~-G~I~r--i~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~ 138 (259)
++| .+|+..-..... -..|-.+++|++|+.+|++... |.|.. +..+|..+......... ++.
T Consensus 72 D~~~G~Lt~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~-------g~~------ 137 (346)
T COG2706 72 DPDDGRLTFLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT-------GSG------ 137 (346)
T ss_pred cCCCCeEEEeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecC-------CCC------
Confidence 444 355554433332 3677899999999989988765 44433 33444322211111000 000
Q ss_pred cccccCcCCCcceEEEeCCCC-cEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCC
Q 039124 139 QWKHEKWCGRPLGLRFNKDTG-DLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRY 215 (259)
Q Consensus 139 ~~~~~~~~grPlGl~~d~~~G-~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~ 215 (259)
...++.-..++-..++++ | -|+++|-..- ++.++.+-|..+... +..=+|-..|.-|++.|+|. .|+..
T Consensus 138 -p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~y~~~dg~L~~~~-~~~v~~G~GPRHi~FHpn~k~aY~v~----- 209 (346)
T COG2706 138 -PHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFLYDLDDGKLTPAD-PAEVKPGAGPRHIVFHPNGKYAYLVN----- 209 (346)
T ss_pred -CCccccCCccceeeeCCC-CCEEEEeecCCceEEEEEcccCcccccc-ccccCCCCCcceEEEcCCCcEEEEEe-----
Confidence 011222334677788995 6 5667886543 555554444444332 22224556799999999998 55532
Q ss_pred CcccceeeeeccCCCceEEEEeCCCCcEEEe
Q 039124 216 NRVDHFFILLEGESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 216 ~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl 246 (259)
|-+.+=-+|.||+.+|+.+.|
T Consensus 210 ----------EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 210 ----------ELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred ----------ccCCEEEEEEEcCCCceEEEe
Confidence 223333577888877776655
No 75
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.51 E-value=0.55 Score=41.75 Aligned_cols=125 Identities=16% Similarity=0.078 Sum_probs=59.6
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccC-cCCCc
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEK-WCGRP 149 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~grP 149 (259)
+++...+..-||+|++-.+|..+.++-.+++++.++.+... ....+.. ++. . ..... ..-.-
T Consensus 57 r~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~-----~~~-~----------l~~~~~~N~G~ 120 (248)
T PF06977_consen 57 RRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADV-----QKI-S----------LGFPNKGNKGF 120 (248)
T ss_dssp EEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEE-----EEE-E-------------S---SS--
T ss_pred EEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhc-----eEE-e----------cccccCCCcce
Confidence 33444557789999997667655556568888887663220 0000000 000 0 00000 01112
Q ss_pred ceEEEeCCCCcEEEEeCC--CceEEEEC--CCCeEEEeee-c--CCCCCccccccEEEcCC-CcEEEecCC
Q 039124 150 LGLRFNKDTGDLYIADAY--YGLLVVGS--KGGLATPLAT-Q--AGGKPILFANDLDVHKN-GSIFFTDTS 212 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~--~Gl~~v~~--~gg~~~~l~~-~--~~g~pl~~~Ndl~vd~d-G~IyfTDss 212 (259)
-||++|+.+++|||+--. .+|+.++. .......... . .....+.-+.++.+++. |++|+-...
T Consensus 121 EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e 191 (248)
T PF06977_consen 121 EGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE 191 (248)
T ss_dssp EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC
Confidence 499999987899987433 35888875 2222222211 1 12334556789999985 678876443
No 76
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.51 E-value=1.2 Score=37.00 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=61.8
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
.++.|.++++.++++..+|.|..|+........ ......+....+.+.++ +.++
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~-------------------------~~~~~~~~i~~~~~~~~-~~~~ 108 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVR-------------------------TLTGHTSYVSSVAFSPD-GRIL 108 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceE-------------------------EEeccCCcEEEEEEcCC-CCEE
Confidence 488898888889999999999999876531110 00111234678889884 7887
Q ss_pred EEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 163 IADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 163 VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
++....| +..++..+++........ -.....+++++++.++++-+
T Consensus 109 ~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 109 SSSSRDKTIKVWDVETGKCLTTLRGH----TDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred EEecCCCeEEEEECCCcEEEEEeccC----CCcEEEEEEcCcCCEEEEEc
Confidence 7766344 677787755322222211 12467788888777555543
No 77
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.50 E-value=0.58 Score=42.97 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=53.2
Q ss_pred cceEEEeCCCCcEEEEeCCC------c-eEEEECCCCeEEEeeec--C-------CC-CCccccccEEEcCCCc-EEEec
Q 039124 149 PLGLRFNKDTGDLYIADAYY------G-LLVVGSKGGLATPLATQ--A-------GG-KPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~------G-l~~v~~~gg~~~~l~~~--~-------~g-~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
+-||++.+ +|.+||++-+. . |++++.+|...+.+... . .+ .+=.-+-+|++.+||+ +|+.-
T Consensus 87 ~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 34999976 59999998776 4 99999886544444211 1 11 1233567999999999 77654
Q ss_pred CCCCCCcccceeeeeccCCCceEEEEeCCC
Q 039124 211 TSKRYNRVDHFFILLEGESTGRLLRYDPPT 240 (259)
Q Consensus 211 ss~~~~~~~~~~~~~e~~~~GrL~rydp~t 240 (259)
-+...+... ..-......-|+++||+.+
T Consensus 166 E~~l~~d~~--~~~~~~~~~~ri~~~d~~~ 193 (326)
T PF13449_consen 166 ESPLKQDGP--RANPDNGSPLRILRYDPKT 193 (326)
T ss_pred CccccCCCc--ccccccCceEEEEEecCCC
Confidence 443221100 0000112235889999875
No 78
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.47 E-value=0.6 Score=39.64 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=59.4
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeCCCce
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~Gl 170 (259)
++.+|+...++.|+.++...+. ..+... +. ...... ...+ ++.+||+.....|
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~-~~W~~~--------~~-------------~~~~~~---~~~~--~~~v~v~~~~~~l 88 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGK-VLWRFD--------LP-------------GPISGA---PVVD--GGRVYVGTSDGSL 88 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSE-EEEEEE--------CS-------------SCGGSG---EEEE--TTEEEEEETTSEE
T ss_pred CCEEEEEcCCCEEEEEECCCCC-EEEEee--------cc-------------ccccce---eeec--ccccccccceeee
Confidence 4458888899999999985542 222111 11 000111 2333 4789988766679
Q ss_pred EEEECCCCeEEEeeec--CCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcE
Q 039124 171 LVVGSKGGLATPLATQ--AGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSN 243 (259)
Q Consensus 171 ~~v~~~gg~~~~l~~~--~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~ 243 (259)
+.+|..+|+...-... .+..++...-..+++ ++.+|+..+ .|.|+.+|++||+.
T Consensus 89 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 89 YALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKL 144 (238)
T ss_dssp EEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEE
T ss_pred EecccCCcceeeeeccccccccccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcE
Confidence 9999777764322111 122223334445555 445777664 34677777777755
No 79
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.32 E-value=1.4 Score=36.59 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=62.0
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
....++.|.+++.+++++..+|.|..|+........ . .....+....++++++ +
T Consensus 94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~------------------------~~~~~~~i~~~~~~~~-~ 147 (289)
T cd00200 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-T------------------------LRGHTDWVNSVAFSPD-G 147 (289)
T ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE-E------------------------eccCCCcEEEEEEcCc-C
Confidence 467789999888877777779999999876431110 0 0111234578899984 7
Q ss_pred cEEEEeC-CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEec
Q 039124 160 DLYIADA-YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 160 ~L~VaD~-~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
.++++.. ...+..+|..+++........ -...+.+++.++|+ ++++.
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGH----TGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecC----ccccceEEECCCcCEEEEec
Confidence 7776655 334677787655322222211 12467888888884 55544
No 80
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=95.32 E-value=0.7 Score=41.22 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=61.8
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc-ceEEEeCCCCcE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP-LGLRFNKDTGDL 161 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP-lGl~~d~~~G~L 161 (259)
-++.|..+|+..||+..||.+..|+.... .|.- .+.+ ..| +.+..+++-++|
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~---------------~~qR----------~~~~--~spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSL---------------SCQR----------NYQH--NSPVNTVVLHPNQTEL 139 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCc---------------ccch----------hccC--CCCcceEEecCCcceE
Confidence 56788889999999999999988886432 1320 0111 123 467778765899
Q ss_pred EEEeCCCceEEEECCCCeEE-EeeecCCCCCccccccEEEcCCCcEE
Q 039124 162 YIADAYYGLLVVGSKGGLAT-PLATQAGGKPILFANDLDVHKNGSIF 207 (259)
Q Consensus 162 ~VaD~~~Gl~~v~~~gg~~~-~l~~~~~g~pl~~~Ndl~vd~dG~Iy 207 (259)
+++|....|...|....... .++.+ ++ .+.-.++|++||...
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe-~~---~~i~sl~v~~dgsml 182 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPE-DD---TSIQSLTVMPDGSML 182 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCC-CC---cceeeEEEcCCCcEE
Confidence 99998777888887655322 23322 22 456777888777643
No 81
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.25 E-value=1.3 Score=42.64 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=74.4
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcce
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLG 151 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlG 151 (259)
.+.+.|.-..--+++|.++|+++.++..|+.|.-|+........ . + ...-+.-.+
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~-~----------------------l--~~hs~~is~ 293 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR-K----------------------L--KGHSDGISG 293 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE-e----------------------e--eccCCceEE
Confidence 34455666666899999999999999999999999987641110 0 1 111223468
Q ss_pred EEEeCCCCcEEEEeCCCceEEE-ECCCCeEEEeeecCCCCCcc-ccccEEEcCCCcEEEecCC
Q 039124 152 LRFNKDTGDLYIADAYYGLLVV-GSKGGLATPLATQAGGKPIL-FANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~~Gl~~v-~~~gg~~~~l~~~~~g~pl~-~~Ndl~vd~dG~IyfTDss 212 (259)
++|.+ +|+++++-.+.|.++| |..++... +.....+..-. -.+-+.++++|...++-.-
T Consensus 294 ~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 294 LAFSP-DGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred EEECC-CCCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 99999 4888887777785554 98888633 11222221111 4578888899986665443
No 82
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.21 E-value=0.31 Score=45.58 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=42.0
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc-ceEEEeCCCCcEEE
Q 039124 85 LEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP-LGLRFNKDTGDLYI 163 (259)
Q Consensus 85 ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP-lGl~~d~~~G~L~V 163 (259)
++++ ++.+|+...+|.|+.++.+.+. ..+...... + . + .+. .....+. -++.++ ++.+||
T Consensus 65 Pvv~--~~~vy~~~~~g~l~ald~~tG~-~~W~~~~~~--~-~---~-------~~~-~~~~~~~~~~~~v~--~~~v~v 125 (394)
T PRK11138 65 PAVA--YNKVYAADRAGLVKALDADTGK-EIWSVDLSE--K-D---G-------WFS-KNKSALLSGGVTVA--GGKVYI 125 (394)
T ss_pred cEEE--CCEEEEECCCCeEEEEECCCCc-EeeEEcCCC--c-c---c-------ccc-cccccccccccEEE--CCEEEE
Confidence 4553 4458999899999999976542 222211000 0 0 0 000 0000011 135555 378999
Q ss_pred EeCCCceEEEECCCCe
Q 039124 164 ADAYYGLLVVGSKGGL 179 (259)
Q Consensus 164 aD~~~Gl~~v~~~gg~ 179 (259)
.+....|+.+|.++|+
T Consensus 126 ~~~~g~l~ald~~tG~ 141 (394)
T PRK11138 126 GSEKGQVYALNAEDGE 141 (394)
T ss_pred EcCCCEEEEEECCCCC
Confidence 8766669999998886
No 83
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=95.07 E-value=0.064 Score=47.05 Aligned_cols=141 Identities=17% Similarity=0.100 Sum_probs=68.3
Q ss_pred CCcccCCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCcccccccccccc
Q 039124 64 NLSRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHE 143 (259)
Q Consensus 64 ~n~~L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~ 143 (259)
-|+.+..++.|..+.-..=..|.+|+.|. +|+-..+|+++|..+....-..++.. ..+++. .
T Consensus 65 ~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~-LYaV~~~G~lyR~~~~~~~~~~W~~~---~~~~iG--------------~ 126 (229)
T PF14517_consen 65 GNTWDSGSKQIGDGGWNSFKFIFFDPTGV-LYAVTPDGKLYRHPRPTNGSDNWIGG---SGKKIG--------------G 126 (229)
T ss_dssp T--HHHH-EEEE-S-GGG-SEEEE-TTS--EEEEETT-EEEEES---STT--HHH----HSEEEE---------------
T ss_pred cccccccCcccccCcccceeEEEecCCcc-EEEeccccceeeccCCCccCcchhhc---cceecc--------------c
Confidence 45556788999998333334999999987 88888899999987643311111100 000010 1
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCCCceEEE-ECCCCeEEEeee---cCCCCCccccccEEEcCCCcEEEecCCCCCCccc
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAYYGLLVV-GSKGGLATPLAT---QAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVD 219 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~~Gl~~v-~~~gg~~~~l~~---~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~ 219 (259)
..+....-+-+++ +|.||+.+....+++- .|+++. ..+.+ .+.+.....+--|...++|+||..++
T Consensus 127 ~GW~~f~~vfa~~-~GvLY~i~~dg~~~~~~~p~~~~-~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~-------- 196 (229)
T PF14517_consen 127 TGWNDFDAVFAGP-NGVLYAITPDGRLYRRYRPDGGS-DRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS-------- 196 (229)
T ss_dssp SSGGGEEEEEE-T-TS-EEEEETTE-EEEE---SSTT---HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E--------
T ss_pred CCCccceEEEeCC-CccEEEEcCCCceEEeCCCCCCC-CccccccceeccCCcccceEEeeCCCCcEEEEec--------
Confidence 1223345677888 5999988865446666 455432 11211 11122223466788889999998854
Q ss_pred ceeeeeccCCCceEEEEeCCCCc
Q 039124 220 HFFILLEGESTGRLLRYDPPTKS 242 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~ 242 (259)
.|+|||+.+.+..
T Consensus 197 ----------~G~lyr~~~p~~~ 209 (229)
T PF14517_consen 197 ----------NGKLYRGRPPQNG 209 (229)
T ss_dssp ----------TTEEEEES---ST
T ss_pred ----------CCEEeccCCcccC
Confidence 4789999887643
No 84
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.00 E-value=0.087 Score=33.60 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=28.5
Q ss_pred CcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEE-EecCCCCCcceeEE
Q 039124 204 GSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNS-YCVRWLGFSKWSTI 258 (259)
Q Consensus 204 G~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~-vl~~~L~~pNGval 258 (259)
|+||+||.+.+ ..+.+-+.+....+ ++-++|..|+|||+
T Consensus 1 ~~iYWtD~~~~----------------~~I~~a~~dGs~~~~vi~~~l~~P~giaV 40 (42)
T PF00058_consen 1 GKIYWTDWSQD----------------PSIERANLDGSNRRTVISDDLQHPEGIAV 40 (42)
T ss_dssp TEEEEEETTTT----------------EEEEEEETTSTSEEEEEESSTSSEEEEEE
T ss_pred CEEEEEECCCC----------------cEEEEEECCCCCeEEEEECCCCCcCEEEE
Confidence 57999998742 26777777644444 45578999999986
No 85
>PRK02889 tolB translocation protein TolB; Provisional
Probab=94.97 E-value=2 Score=40.86 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=54.7
Q ss_pred eEEEcCCCCEE-EEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGRGP-YTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~~~-yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+.+ |++..+ ..|+.++..++....+. ...+.-...++.++ |+
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~--------------------------~~~g~~~~~~~SPD-G~ 252 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA--------------------------NFKGSNSAPAWSPD-GR 252 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee--------------------------cCCCCccceEECCC-CC
Confidence 56898998744 555443 35888887655221110 01122346788885 64
Q ss_pred -EEEE-e--CCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 161 -LYIA-D--AYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 161 -L~Va-D--~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
|+++ + ....|+.++.+++..+.+... .+ .......++||+ |+|+
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~wSpDG~~l~f~ 301 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQS-SG----IDTEPFFSPDGRSIYFT 301 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCC-CC----CCcCeEEcCCCCEEEEE
Confidence 5443 2 223489999888776665432 11 234567899997 6665
No 86
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=94.93 E-value=1.1 Score=42.02 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=58.0
Q ss_pred CCceeEEEcCCCCEEEEEc-CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGPYTGL-ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~-~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
..|+++++.++|+.+|++. ..+.+..++..... ...... .+. ........|+.+|...+.
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle--~v~~I~------~~~----------~~~~~~~~Rv~aIv~s~~- 138 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE--PVKTIP------TGG----------MPVDGPESRVAAIVASPG- 138 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE--------E----------E-TTTS---EEEEEE-SS-
T ss_pred CCcceEEEcCCCCEEEEEecCCCceeEecccccc--ceeecc------ccc----------ccccccCCCceeEEecCC-
Confidence 6899999999999889876 57889999987642 211100 000 000113456778876663
Q ss_pred CcEEE-EeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 159 GDLYI-ADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 159 G~L~V-aD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
...|| +--..+ ++.||..... ......++ .-.+|.|..++++|+-|+.
T Consensus 139 ~~~fVv~lkd~~~I~vVdy~d~~-~~~~~~i~--~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 139 RPEFVVNLKDTGEIWVVDYSDPK-NLKVTTIK--VGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp SSEEEEEETTTTEEEEEETTTSS-CEEEEEEE----TTEEEEEE-TTSSEEEE
T ss_pred CCEEEEEEccCCeEEEEEecccc-ccceeeec--ccccccccccCcccceeee
Confidence 55454 434334 8888855432 11112111 1248999999999996554
No 87
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.92 E-value=0.61 Score=43.10 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=37.9
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeCCCce
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~Gl 170 (259)
++.+|+...+|.++.++...+. .. |..+ .+......++ ++.+|+++....+
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~-~~------------------------W~~~--~~~~~~p~~~--~~~vyv~~~~G~l 291 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGR-VL------------------------WKRD--ASSYQGPAVD--DNRLYVTDADGVV 291 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCc-EE------------------------Eeec--cCCccCceEe--CCEEEEECCCCeE
Confidence 3457887788888888875541 11 1111 1122334444 4789998876669
Q ss_pred EEEECCCCe
Q 039124 171 LVVGSKGGL 179 (259)
Q Consensus 171 ~~v~~~gg~ 179 (259)
+.+|.++|+
T Consensus 292 ~~~d~~tG~ 300 (377)
T TIGR03300 292 VALDRRSGS 300 (377)
T ss_pred EEEECCCCc
Confidence 999998885
No 88
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.87 E-value=1 Score=41.37 Aligned_cols=137 Identities=17% Similarity=0.122 Sum_probs=77.7
Q ss_pred CceeEEEcCCCCEEEEEcCC------CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 81 GPESLEFDGLGRGPYTGLAD------GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~------G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
-+|+|++.++|.+|+++=.+ .+|++++.++.....+..+...... -. + ..........-||++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~--~~-~--------~~~~~~N~G~E~la~ 154 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPD--AN-G--------TSGRRNNRGFEGLAV 154 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccc--cC-c--------cccccCCCCeEEEEE
Confidence 89999997788866666667 7999999886632333222110000 00 0 001112223448999
Q ss_pred eCCCCc-EEEEe-------CC---------CceEEEECCC-Ce-EEEeeecCCC----CCccccccEEEcCCCcEEEecC
Q 039124 155 NKDTGD-LYIAD-------AY---------YGLLVVGSKG-GL-ATPLATQAGG----KPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 155 d~~~G~-L~VaD-------~~---------~Gl~~v~~~g-g~-~~~l~~~~~g----~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
.++ |. ||++- .. ..|+++++.+ +. ...++=..+. ..-..+-|++..+||++++=+-
T Consensus 155 ~~d-G~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 155 SPD-GRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred CCC-CCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 995 77 88762 11 1266777764 21 2223222221 1345678899999999998775
Q ss_pred CCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 212 SKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 212 s~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
..... .....|||++|..
T Consensus 234 ~~~~~----------~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 234 DFSPG----------TGNYKRIYRVDLS 251 (326)
T ss_pred cCCCC----------ccceEEEEEEEcc
Confidence 52211 2345678888864
No 89
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=94.79 E-value=1.1 Score=41.99 Aligned_cols=71 Identities=24% Similarity=0.257 Sum_probs=47.1
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc-
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD- 160 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~- 160 (259)
+-++++.++|+.+|+...+|.|-.|+....... .....|..|.|+++.++ |+
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v--------------------------~~i~~G~~~~~i~~s~D-G~~ 91 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV--------------------------ATIKVGGNPRGIAVSPD-GKY 91 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE--------------------------EEEE-SSEEEEEEE--T-TTE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEE--------------------------EEEecCCCcceEEEcCC-CCE
Confidence 556788899999999999999999998766311 11244677999999995 65
Q ss_pred EEEEeCCCc-eEEEECCCCe
Q 039124 161 LYIADAYYG-LLVVGSKGGL 179 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~ 179 (259)
+||++...+ +..+|.++.+
T Consensus 92 ~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp EEEEEEETTEEEEEETTT--
T ss_pred EEEEecCCCceeEecccccc
Confidence 566665444 7777987754
No 90
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.71 E-value=1.4 Score=44.75 Aligned_cols=101 Identities=19% Similarity=0.319 Sum_probs=71.6
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc-cEEEEEEeecCccccccccCccccccccccccCcCCCc---ceEE
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENV-GWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP---LGLR 153 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~-~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP---lGl~ 153 (259)
.-.+--++.|...|+.++++..||+|.-|+.... .+++|.. ..| ..++
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~----------------------------P~p~Qfscva 442 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS----------------------------PEPIQFSCVA 442 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC----------------------------CCceeeeEEE
Confidence 3455566778788999999999999999987653 2444421 122 3689
Q ss_pred EeCCCCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 154 FNKDTGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
+|+ .|+|.+|-+.. -|+.++.+||+.--+.+.-+|. ..+|.++++|.+..|-|
T Consensus 443 vD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 443 VDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGSLLASGS 497 (893)
T ss_pred EcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc----ceeeEEccccCeEEecc
Confidence 999 59987765443 4888899999755555555552 56889999999887765
No 91
>PRK01742 tolB translocation protein TolB; Provisional
Probab=94.66 E-value=1.9 Score=40.98 Aligned_cols=95 Identities=22% Similarity=0.328 Sum_probs=54.0
Q ss_pred eeEEEcCCCC-EEEEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 83 ESLEFDGLGR-GPYTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~~G~-~~yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
.+++|.++|+ ++|++..+ ..|+.++..+.....+. ...+.-...+|.++ |
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~--------------------------~~~g~~~~~~wSPD-G 259 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA--------------------------SFRGHNGAPAFSPD-G 259 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe--------------------------cCCCccCceeECCC-C
Confidence 5679999997 44555443 46888887654211110 00111124688885 7
Q ss_pred c-EEEEeCCC---ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 160 D-LYIADAYY---GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 160 ~-L~VaD~~~---Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
+ |+++-... .|+.+|.+++..+.+... .+ .....+.++||+ |+|+
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~wSpDG~~i~f~ 309 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSG-AG----NNTEPSWSPDGQSILFT 309 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccC-CC----CcCCEEECCCCCEEEEE
Confidence 5 44432222 388889888876666432 11 234677777876 5554
No 92
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.54 E-value=0.75 Score=42.12 Aligned_cols=100 Identities=19% Similarity=0.159 Sum_probs=60.0
Q ss_pred EEcCCCCEEEEE-----cCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC-
Q 039124 86 EFDGLGRGPYTG-----LADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG- 159 (259)
Q Consensus 86 a~D~~G~~~yt~-----~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G- 159 (259)
+|.++|+++||. ...|.|-.++.... +... .+ | ...+=.|+-|.+.++ |
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri-----------~E----------~--~s~GIGPHel~l~pD-G~ 111 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARG-YRRI-----------GE----------F--PSHGIGPHELLLMPD-GE 111 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCC-cEEE-----------eE----------e--cCCCcChhhEEEcCC-CC
Confidence 567899999996 34677888888733 2221 10 1 122334999999995 7
Q ss_pred cEEEEeCC------CceEEEECCCCeEEEe-eecC-----------CCCCccccccEEEcCCCcEEEec
Q 039124 160 DLYIADAY------YGLLVVGSKGGLATPL-ATQA-----------GGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 160 ~L~VaD~~------~Gl~~v~~~gg~~~~l-~~~~-----------~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
.|.||+.. .|..|+|.++.+.... .+.. +.........|+++.+|.|+|.-
T Consensus 112 tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 112 TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEE
Confidence 88888643 2444444443331111 1111 11233467889999999999974
No 93
>PRK02889 tolB translocation protein TolB; Provisional
Probab=94.44 E-value=2.3 Score=40.32 Aligned_cols=117 Identities=17% Similarity=0.224 Sum_probs=62.5
Q ss_pred eEEEcCCCCEE-EEEcCCC--eEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 84 SLEFDGLGRGP-YTGLADG--RIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 84 ~ia~D~~G~~~-yt~~~~G--~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+++|.++|+.+ |+...+| +|+.++.++.....+ . ...+.-....+.++ |+
T Consensus 244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------t--~~~~~~~~~~wSpD-G~ 296 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL------------------------T--QSSGIDTEPFFSPD-GR 296 (427)
T ss_pred ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC------------------------C--CCCCCCcCeEEcCC-CC
Confidence 57888888655 4555554 377777654421110 0 00111234568885 75
Q ss_pred -EEE-EeCC--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 161 -LYI-ADAY--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 161 -L~V-aD~~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
|++ +|.. ..|+.++.+++..+.+.. .+. .....++++||+ |+++.... ..-+|+.
T Consensus 297 ~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~g~---~~~~~~~SpDG~~Ia~~s~~~---------------g~~~I~v 356 (427)
T PRK02889 297 SIYFTSDRGGAPQIYRMPASGGAAQRVTF--TGS---YNTSPRISPDGKLLAYISRVG---------------GAFKLYV 356 (427)
T ss_pred EEEEEecCCCCcEEEEEECCCCceEEEec--CCC---CcCceEECCCCCEEEEEEccC---------------CcEEEEE
Confidence 433 3322 238889988776665542 221 223568899997 55554321 0124666
Q ss_pred EeCCCCcEEEec
Q 039124 236 YDPPTKSNSYCV 247 (259)
Q Consensus 236 ydp~tg~~~vl~ 247 (259)
+|..+++.+.+.
T Consensus 357 ~d~~~g~~~~lt 368 (427)
T PRK02889 357 QDLATGQVTALT 368 (427)
T ss_pred EECCCCCeEEcc
Confidence 666666655554
No 94
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.37 E-value=4.4 Score=38.66 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=69.7
Q ss_pred eEEEcCCCC-EEEEEcCC--CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC-
Q 039124 84 SLEFDGLGR-GPYTGLAD--GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG- 159 (259)
Q Consensus 84 ~ia~D~~G~-~~yt~~~~--G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G- 159 (259)
...|.++|+ ++|+...+ ..|+.++.++...+.+ .. ..... ....|.++ |
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L-----------T~------------~~~~d---~~p~~SPD-G~ 289 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI-----------TN------------YPGID---VNGNFVED-DK 289 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEc-----------cc------------CCCcc---CccEECCC-CC
Confidence 367888886 44555433 5688888765533221 10 00011 12357885 5
Q ss_pred cEEEEeCCC---ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeeccCCCceEEE
Q 039124 160 DLYIADAYY---GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLEGESTGRLLR 235 (259)
Q Consensus 160 ~L~VaD~~~---Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e~~~~GrL~r 235 (259)
.|++..... .|++++.++|+.+.+... |. .| ..++|||+ |.|+-..... + . .....+|+.
T Consensus 290 ~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~----~~-~~~SPDG~~Ia~~~~~~~~---~-----~-~~~~~~I~v 353 (419)
T PRK04043 290 RIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK----NN-SSVSTYKNYIVYSSRETNN---E-----F-GKNTFNLYL 353 (419)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEeCccC--CC----cC-ceECCCCCEEEEEEcCCCc---c-----c-CCCCcEEEE
Confidence 465543222 499999999987666532 32 12 38899998 5555432210 0 0 012357899
Q ss_pred EeCCCCcEEEecCC
Q 039124 236 YDPPTKSNSYCVRW 249 (259)
Q Consensus 236 ydp~tg~~~vl~~~ 249 (259)
+|.++++.+.|-++
T Consensus 354 ~d~~~g~~~~LT~~ 367 (419)
T PRK04043 354 ISTNSDYIRRLTAN 367 (419)
T ss_pred EECCCCCeEECCCC
Confidence 99888888777543
No 95
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=94.22 E-value=0.4 Score=47.11 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=49.5
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCC-----------------CceEEEECCCC-------eEEEeeecCCC----------
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAY-----------------YGLLVVGSKGG-------LATPLATQAGG---------- 189 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~-----------------~Gl~~v~~~gg-------~~~~l~~~~~g---------- 189 (259)
....||-++++.+.+|++|++... .+|+++-+.++ ..+.++..-+.
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~ 493 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASAN 493 (616)
T ss_pred ccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccC
Confidence 456799999999988899997532 24899987765 34444322111
Q ss_pred ---CCccccccEEEcCCCcEEE-ecCCC
Q 039124 190 ---KPILFANDLDVHKNGSIFF-TDTSK 213 (259)
Q Consensus 190 ---~pl~~~Ndl~vd~dG~Iyf-TDss~ 213 (259)
.-|..|++|++|+.|++|+ ||.+.
T Consensus 494 ~~~~~f~~PDnl~fD~~GrLWi~TDg~~ 521 (616)
T COG3211 494 INANWFNSPDNLAFDPWGRLWIQTDGSG 521 (616)
T ss_pred cccccccCCCceEECCCCCEEEEecCCC
Confidence 1256699999999999997 66654
No 96
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.19 E-value=1.2 Score=43.91 Aligned_cols=123 Identities=13% Similarity=0.120 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC-CcceEEEeCCCCcEEEEeCCCc
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG-RPLGLRFNKDTGDLYIADAYYG 169 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g-rPlGl~~d~~~G~L~VaD~~~G 169 (259)
++.+|+...+|.|+.++...+. ..+...... +. .......|. -..|+++.. +.+|+++....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk-~lW~~~~~~--------~~------~~~~~~~~~~~~rg~av~~--~~v~v~t~dg~ 131 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGK-ELWKYDPKL--------PD------DVIPVMCCDVVNRGVALYD--GKVFFGTLDAR 131 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCc-eeeEecCCC--------Cc------ccccccccccccccceEEC--CEEEEEcCCCE
Confidence 4458888888999999987552 222211000 00 000000111 113566663 78999888778
Q ss_pred eEEEECCCCeEEEeeecCCCCC--ccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEE
Q 039124 170 LLVVGSKGGLATPLATQAGGKP--ILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 170 l~~v~~~gg~~~~l~~~~~g~p--l~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~ 244 (259)
|+.+|.++|+. ..-....+.. ......-.+. +|.||+..++..+ ...|.|+.||..||+..
T Consensus 132 l~ALDa~TGk~-~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 132 LVALDAKTGKV-VWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEF------------GVRGYVTAYDAKTGKLV 194 (527)
T ss_pred EEEEECCCCCE-EeecccccccccccccCCcEEE-CCEEEEeeccccc------------CCCcEEEEEECCCCcee
Confidence 99999998863 3322221111 1111222222 6788888665432 24678888888888654
No 97
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.00 E-value=1.4 Score=44.75 Aligned_cols=107 Identities=18% Similarity=0.284 Sum_probs=74.7
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc-cEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENV-GWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~-~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
...=.++++.++|.++.|+..||+|..|+...+ -+.+| .||+.+ -.|+.|..
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF-------------------------teHts~-Vt~v~f~~- 402 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF-------------------------TEHTSG-VTAVQFTA- 402 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe-------------------------ccCCCc-eEEEEEEe-
Confidence 556668999999999999999999999987654 12222 234443 36899998
Q ss_pred CCcEEEEeCCCc-eEEEECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCC
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYN 216 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~ 216 (259)
.|+.+++-+-.| +...|..... .+++... .| ...+-+++|+.|.|.+.-+-..|.
T Consensus 403 ~g~~llssSLDGtVRAwDlkRYrNfRTft~P---~p-~QfscvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP---EP-IQFSCVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred cCCEEEEeecCCeEEeeeecccceeeeecCC---Cc-eeeeEEEEcCCCCEEEeeccceEE
Confidence 599988877667 5555765432 3444432 23 356899999999998876655443
No 98
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=93.74 E-value=2.6 Score=38.40 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=75.5
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCcccccccccc-ccCcCCCcceEEEe--
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWK-HEKWCGRPLGLRFN-- 155 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~grPlGl~~d-- 155 (259)
...-.+|..+.+|+++.+.-....|++|++..+. ..+....+..+. .. .......-+..++.
T Consensus 143 ~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~-I~W~lgG~~~~d--------------f~~~~~~f~~QHdar~~~~ 207 (299)
T PF14269_consen 143 YFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGK-IIWRLGGKRNSD--------------FTLPATNFSWQHDARFLNE 207 (299)
T ss_pred ccEeeeeeecCCccEEEEecccCEEEEEECCCCc-EEEEeCCCCCCc--------------ccccCCcEeeccCCEEecc
Confidence 3445577888899977777778889999976652 233332210000 00 01112334555555
Q ss_pred --CCCCcEEEEeCC----------Cc-eEEEECCCCeEEEeeecC-CCCC--ccccccEEEcCCCcEEEecCCCCCCccc
Q 039124 156 --KDTGDLYIADAY----------YG-LLVVGSKGGLATPLATQA-GGKP--ILFANDLDVHKNGSIFFTDTSKRYNRVD 219 (259)
Q Consensus 156 --~~~G~L~VaD~~----------~G-l~~v~~~gg~~~~l~~~~-~g~p--l~~~Ndl~vd~dG~IyfTDss~~~~~~~ 219 (259)
. ++.|.+-|-. .+ ++.+|+++..++.+-.-. ...+ -...-.+-.-++|++.++...
T Consensus 208 ~~~-~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~------- 279 (299)
T PF14269_consen 208 SND-DGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGN------- 279 (299)
T ss_pred CCC-CCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCC-------
Confidence 4 4677776652 23 789999987665443322 1111 223335555677998888765
Q ss_pred ceeeeeccCCCceEEEEeCCCCcE
Q 039124 220 HFFILLEGESTGRLLRYDPPTKSN 243 (259)
Q Consensus 220 ~~~~~~e~~~~GrL~rydp~tg~~ 243 (259)
.||+..|+++ |++
T Consensus 280 ----------~g~~~E~~~~-G~v 292 (299)
T PF14269_consen 280 ----------NGRISEFTPD-GEV 292 (299)
T ss_pred ----------CceEEEECCC-CCE
Confidence 3678888876 544
No 99
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.64 E-value=1.1 Score=41.44 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=65.4
Q ss_pred EcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeC
Q 039124 87 FDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADA 166 (259)
Q Consensus 87 ~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~ 166 (259)
.+.+|. +|+...+|+|+.+++++.. ..+ +. .+.+ ....+..|... . +|++|+.+.
T Consensus 65 ~~~dg~-v~~~~~~G~i~A~d~~~g~-~~W-------~~-~~~~-----------~~~~~~~~~~~---~-~G~i~~g~~ 119 (370)
T COG1520 65 ADGDGT-VYVGTRDGNIFALNPDTGL-VKW-------SY-PLLG-----------AVAQLSGPILG---S-DGKIYVGSW 119 (370)
T ss_pred EeeCCe-EEEecCCCcEEEEeCCCCc-EEe-------cc-cCcC-----------cceeccCceEE---e-CCeEEEecc
Confidence 445676 8898999999999998763 111 11 1110 01223334433 2 489999877
Q ss_pred CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcE
Q 039124 167 YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSN 243 (259)
Q Consensus 167 ~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~ 243 (259)
...++.+|.++|+ ..+..+..+. ... -+-.+-.+|.+|+... .|.++.+|++||+.
T Consensus 120 ~g~~y~ld~~~G~-~~W~~~~~~~-~~~-~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~ 175 (370)
T COG1520 120 DGKLYALDASTGT-LVWSRNVGGS-PYY-ASPPVVGDGTVYVGTD------------------DGHLYALNADTGTL 175 (370)
T ss_pred cceEEEEECCCCc-EEEEEecCCC-eEE-ecCcEEcCcEEEEecC------------------CCeEEEEEccCCcE
Confidence 6559999997675 3344344441 222 2335556788888731 24677777776655
No 100
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.63 E-value=5.1 Score=37.89 Aligned_cols=68 Identities=21% Similarity=0.423 Sum_probs=42.7
Q ss_pred CCCcceEEEeCCCCcEEEEeCCCceEEEECC--CCeEEEeeecCCCCCcc-ccccEEE--cCCC--cEEEecCCC
Q 039124 146 CGRPLGLRFNKDTGDLYIADAYYGLLVVGSK--GGLATPLATQAGGKPIL-FANDLDV--HKNG--SIFFTDTSK 213 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~--gg~~~~l~~~~~g~pl~-~~Ndl~v--d~dG--~IyfTDss~ 213 (259)
.+.|-|+++|...|.|||++-..||++++.+ ++....++....|..+. =.-+|++ ..+| -|.+|+-..
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~ 281 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGD 281 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG
T ss_pred CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCC
Confidence 4467899999888999999999999999754 54444555445554332 3456776 3344 466666543
No 101
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.56 E-value=0.83 Score=41.84 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=50.0
Q ss_pred CCCcceEEEeCCCCcEEEEeCC-Cc--eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccce
Q 039124 146 CGRPLGLRFNKDTGDLYIADAY-YG--LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHF 221 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~-~G--l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~ 221 (259)
..|.+|++.++. ....|+=+. -| ++.+|..+|+........+|. .|---.++++||+ +|.|+.-.
T Consensus 4 P~RgH~~a~~p~-~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd~-------- 72 (305)
T PF07433_consen 4 PARGHGVAAHPT-RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTENDY-------- 72 (305)
T ss_pred CccccceeeCCC-CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEecccc--------
Confidence 467788988884 444444333 35 778899998765555444443 3445678899998 77776532
Q ss_pred eeeeccCCCceEEEEeCC
Q 039124 222 FILLEGESTGRLLRYDPP 239 (259)
Q Consensus 222 ~~~~e~~~~GrL~rydp~ 239 (259)
....|+|-.||..
T Consensus 73 -----~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 73 -----ETGRGVIGVYDAA 85 (305)
T ss_pred -----CCCcEEEEEEECc
Confidence 2455667777765
No 102
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.53 E-value=1.7 Score=42.14 Aligned_cols=125 Identities=9% Similarity=0.044 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEeCCCce
Q 039124 91 GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIADAYYGL 170 (259)
Q Consensus 91 G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD~~~Gl 170 (259)
++.+|+...+|+|+.++...+. ..+... ... +.. ........+ |+.+.. .+.+|+.+....|
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~-~~W~~~-------~~~-~~~------~~~~~~~~~--g~~~~~-~~~V~v~~~~g~v 122 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGK-VLWRYD-------PKL-PAD------RGCCDVVNR--GVAYWD-PRKVFFGTFDGRL 122 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCCh-hhceeC-------CCC-Ccc------ccccccccC--CcEEcc-CCeEEEecCCCeE
Confidence 3448888889999999986542 111111 110 000 000011222 344443 2789998876679
Q ss_pred EEEECCCCeEEEeeecCCCC---CccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEE
Q 039124 171 LVVGSKGGLATPLATQAGGK---PILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 171 ~~v~~~gg~~~~l~~~~~g~---pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~ 244 (259)
+.+|.++|+. .+-....+. ....-....++ +|.+|+..+...+- .....|.|+.+|.+||+..
T Consensus 123 ~AlD~~TG~~-~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~---------~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 123 VALDAETGKQ-VWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFF---------ACGVRGALRAYDVETGKLL 188 (488)
T ss_pred EEEECCCCCE-eeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccc---------cCCCCcEEEEEECCCCcee
Confidence 9999998863 333332221 01112333444 37788875543211 1234578899998888754
No 103
>PRK01742 tolB translocation protein TolB; Provisional
Probab=93.51 E-value=3.6 Score=39.01 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=33.8
Q ss_pred eEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEec
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTD 210 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTD 210 (259)
..++.++ |+.+++-...+++++|..++..+.+..... ...+.++|||+ |+++.
T Consensus 337 ~~~~SpD-G~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~------~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 337 SAQISAD-GKTLVMINGDNVVKQDLTSGSTEVLSSTFL------DESPSISPNGIMIIYSS 390 (429)
T ss_pred CccCCCC-CCEEEEEcCCCEEEEECCCCCeEEecCCCC------CCCceECCCCCEEEEEE
Confidence 3567774 665544444679999998887665543221 24577899997 55554
No 104
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.41 E-value=1.9 Score=41.75 Aligned_cols=76 Identities=13% Similarity=0.024 Sum_probs=38.3
Q ss_pred EEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCC
Q 039124 161 LYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPT 240 (259)
Q Consensus 161 L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~t 240 (259)
+|+......++.+|.++|+ ..+..+.. -.+++.++ +.+|+.-........+--....-....|+|+.+|..|
T Consensus 304 V~~g~~~G~l~ald~~tG~-~~W~~~~~------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 304 IVHAPKNGFFYVLDRTTGK-LISARPEV------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred EEEECCCceEEEEECCCCc-EeeEeEee------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 4555433348899999886 33332221 12344444 7788854321111000000011134578999999888
Q ss_pred CcEE
Q 039124 241 KSNS 244 (259)
Q Consensus 241 g~~~ 244 (259)
|++.
T Consensus 376 G~~~ 379 (488)
T cd00216 376 GKVV 379 (488)
T ss_pred CcEe
Confidence 8653
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=93.19 E-value=2 Score=40.96 Aligned_cols=130 Identities=18% Similarity=0.102 Sum_probs=78.1
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
=.+.+|.+||.++-++..||.|..|+..... .. + .+...-|--..|.|.. ||-.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~-a-----------------------~Fpght~~vk~i~FsE-NGY~ 403 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NV-A-----------------------KFPGHTGPVKAISFSE-NGYW 403 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCcc-cc-c-----------------------cCCCCCCceeEEEecc-CceE
Confidence 3477888999988889999988888876541 00 0 0111122235889987 6877
Q ss_pred EEEeCCCc-eEEEECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 162 YIADAYYG-LLVVGSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 162 ~VaD~~~G-l~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
++..+..+ +.-.|...-+ ...+. .+ ..+-.|.+.+|..|.....-.+. =++|.++.+
T Consensus 404 Lat~add~~V~lwDLRKl~n~kt~~--l~--~~~~v~s~~fD~SGt~L~~~g~~-----------------l~Vy~~~k~ 462 (506)
T KOG0289|consen 404 LATAADDGSVKLWDLRKLKNFKTIQ--LD--EKKEVNSLSFDQSGTYLGIAGSD-----------------LQVYICKKK 462 (506)
T ss_pred EEEEecCCeEEEEEehhhcccceee--cc--ccccceeEEEcCCCCeEEeecce-----------------eEEEEEecc
Confidence 77666666 7667764211 22222 11 12358999999999744332221 168888877
Q ss_pred CCcEEEe---cCCCCCcceeEE
Q 039124 240 TKSNSYC---VRWLGFSKWSTI 258 (259)
Q Consensus 240 tg~~~vl---~~~L~~pNGval 258 (259)
|++.+.+ .+-...++|+.|
T Consensus 463 ~k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 463 TKSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred cccceeeehhhhcccccceeee
Confidence 7665443 344446666654
No 106
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=92.99 E-value=0.92 Score=44.11 Aligned_cols=128 Identities=19% Similarity=0.207 Sum_probs=77.5
Q ss_pred CCCcccCCCeEEcc---C-CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccc
Q 039124 63 DNLSRLVTGKLEFV---D-EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAK 138 (259)
Q Consensus 63 ~~n~~L~~~e~l~~---~-~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~ 138 (259)
+.|+...+-+++-. + .=.-|-+.+|+++|.++-+++.||.|.-|+..+. .. + ...|
T Consensus 297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~--~v------~--p~~~---------- 356 (641)
T KOG0772|consen 297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSR--TV------R--PVMK---------- 356 (641)
T ss_pred ecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCc--cc------c--cceE----------
Confidence 56776666554432 2 2245678899999998889999999999986432 11 0 0012
Q ss_pred cccccCcCCC-cceEEEeCCCCcEEEEeCCCceEEE-ECCCCeEEEeeecCCCCCcccc-ccEEEcCCCcEEEecCCCC
Q 039124 139 QWKHEKWCGR-PLGLRFNKDTGDLYIADAYYGLLVV-GSKGGLATPLATQAGGKPILFA-NDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 139 ~~~~~~~~gr-PlGl~~d~~~G~L~VaD~~~Gl~~v-~~~gg~~~~l~~~~~g~pl~~~-Ndl~vd~dG~IyfTDss~~ 214 (259)
+..+|..|. -..|.|..+ |+.+.+=...+-++| |...- .+.|.. ..|.+-.|+ -|.++.|+..|.+|-+|..
T Consensus 357 -vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLrq~-kkpL~~-~tgL~t~~~~tdc~FSPd~kli~TGtS~~ 431 (641)
T KOG0772|consen 357 -VKDAHLPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLRQF-KKPLNV-RTGLPTPFPGTDCCFSPDDKLILTGTSAP 431 (641)
T ss_pred -eeeccCCCCceeEEEeccc-cchhhhccCCCceeeeecccc-ccchhh-hcCCCccCCCCccccCCCceEEEeccccc
Confidence 223444443 357899995 887766444443333 55432 233321 233333333 4889999999999988754
No 107
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=92.97 E-value=4.2 Score=36.79 Aligned_cols=112 Identities=21% Similarity=0.159 Sum_probs=73.8
Q ss_pred CCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 70 TGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 70 ~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
+..+.|.|.-..=-+++++++.+.+.++..|..|.-|+--+...-+ ... .+ .-+--
T Consensus 96 ~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t--~~~------~~----------------~~~WV 151 (315)
T KOG0279|consen 96 ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYT--IHE------DS----------------HREWV 151 (315)
T ss_pred cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEE--Eec------CC----------------CcCcE
Confidence 3456778877777899999999999999999999999876652111 110 00 01223
Q ss_pred ceEEEeCCCCcEEEEeCC-CceEEE-ECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 150 LGLRFNKDTGDLYIADAY-YGLLVV-GSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~-~Gl~~v-~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
..++|.|...+.||+.+. .+.+|| |.++-+ +....-|. -...|-+++.|||.+-.+
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~---l~~~~~gh-~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ---LRTTFIGH-SGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcc---hhhccccc-cccEEEEEECCCCCEEec
Confidence 578999854466665443 355555 777643 22333332 357999999999998776
No 108
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.96 E-value=2.6 Score=37.82 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=58.1
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEE-EEEEeecCccccccccCccccccccccccCcCCCc----ceEEEeCCC
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWE-TFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP----LGLRFNKDT 158 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~-~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP----lGl~~d~~~ 158 (259)
+++. +|..+|.+..+.+|+.++|+.-... .+. ++ ..|+| +=|.+- +
T Consensus 134 GLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~---------V~----------------~~g~pv~~LNELE~i--~ 184 (264)
T PF05096_consen 134 GLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQ---------VT----------------DNGRPVSNLNELEYI--N 184 (264)
T ss_dssp EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE----------E----------------ETTEE---EEEEEEE--T
T ss_pred EEEc--CCCEEEEECCccceEEECCcccceEEEEE---------EE----------------ECCEECCCcEeEEEE--c
Confidence 4554 4556888888889999998753211 111 11 12333 346665 4
Q ss_pred CcEEEEeCCC--ceEEEECCCCeEEEeeec------C--CCC---CccccccEEEcCCC-cEEEecC
Q 039124 159 GDLYIADAYY--GLLVVGSKGGLATPLATQ------A--GGK---PILFANDLDVHKNG-SIFFTDT 211 (259)
Q Consensus 159 G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~------~--~g~---pl~~~Ndl~vd~dG-~IyfTDs 211 (259)
|.+| |+-.. .|++|||++|++.-+.+- . ... .....||||-|+++ ++|+|--
T Consensus 185 G~Iy-ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 185 GKIY-ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TEEE-EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CEEE-EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 8888 55443 599999999987766541 1 111 14579999999865 5999864
No 109
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.70 E-value=2.2 Score=38.42 Aligned_cols=121 Identities=15% Similarity=0.144 Sum_probs=63.6
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc--EEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVG--WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~--~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
|.+..+++++--.++ |+.+..++.+|.++.+....+. |. |. .|+. .....+
T Consensus 48 e~ilg~RiE~sa~vv----gdfVV~GCy~g~lYfl~~~tGs~~w~-f~---------~~~~---------vk~~a~---- 100 (354)
T KOG4649|consen 48 EAILGVRIECSAIVV----GDFVVLGCYSGGLYFLCVKTGSQIWN-FV---------ILET---------VKVRAQ---- 100 (354)
T ss_pred ehhhCceeeeeeEEE----CCEEEEEEccCcEEEEEecchhheee-ee---------ehhh---------hccceE----
Confidence 444555555444442 5667778888888877655431 21 11 1210 111111
Q ss_pred ceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCCCCCcccceeeeeccC
Q 039124 150 LGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
.|.++|-+|+......++.+|+.+. .-++-....|.-+ -.-++++ +|.+|++-.+
T Consensus 101 ----~d~~~glIycgshd~~~yalD~~~~-~cVykskcgG~~f---~sP~i~~g~~sly~a~t~---------------- 156 (354)
T KOG4649|consen 101 ----CDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTF---VSPVIAPGDGSLYAAITA---------------- 156 (354)
T ss_pred ----EcCCCceEEEecCCCcEEEeccccc-ceEEecccCCcee---ccceecCCCceEEEEecc----------------
Confidence 2333344444333334666666653 2334344444332 2335677 8899998654
Q ss_pred CCceEEEEeCCCCcEEE
Q 039124 229 STGRLLRYDPPTKSNSY 245 (259)
Q Consensus 229 ~~GrL~rydp~tg~~~v 245 (259)
|+|++.++++...++
T Consensus 157 --G~vlavt~~~~~~~~ 171 (354)
T KOG4649|consen 157 --GAVLAVTKNPYSSTE 171 (354)
T ss_pred --ceEEEEccCCCCcce
Confidence 688888887765443
No 110
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.48 E-value=4.6 Score=36.86 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=83.1
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc-cEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENV-GWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~-~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
.++-+..+.-||+|++-..|....++-.+.+++.+.-+.. ....+..... ++.. . ...-||. -
T Consensus 121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i----~L~~----------~-~k~N~Gf-E 184 (316)
T COG3204 121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKI----PLGT----------T-NKKNKGF-E 184 (316)
T ss_pred EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEE----eccc----------c-CCCCcCc-e
Confidence 3444556889999999777776667777888887654433 1222111000 0100 0 0012332 4
Q ss_pred eEEEeCCCCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC-CCcccceeeeecc
Q 039124 151 GLRFNKDTGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR-YNRVDHFFILLEG 227 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~-~~~~~~~~~~~e~ 227 (259)
|++.|++++.||||=-.+ +|++++..- ..+.. .-..+...+-.+|+.|-|+- |+...--+.+++
T Consensus 185 GlA~d~~~~~l~~aKEr~P~~I~~~~~~~---~~l~~---------~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS- 251 (316)
T COG3204 185 GLAWDPVDHRLFVAKERNPIGIFEVTQSP---SSLSV---------HASLDPTADRDLFVLDVSGLEFNAITNSLLVLS- 251 (316)
T ss_pred eeecCCCCceEEEEEccCCcEEEEEecCC---ccccc---------ccccCcccccceEeeccccceecCCCCcEEEEe-
Confidence 999999888999985543 688886221 11111 11111123334666666653 333222233443
Q ss_pred CCCceEEEEeCCCCcEEEec----------CCCCCcceeEE
Q 039124 228 ESTGRLLRYDPPTKSNSYCV----------RWLGFSKWSTI 258 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~vl~----------~~L~~pNGval 258 (259)
.-+++|+.+|.+ |++.-++ +++..|-||++
T Consensus 252 ~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiam 291 (316)
T COG3204 252 DESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAM 291 (316)
T ss_pred cCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEE
Confidence 345688888876 5543222 34556667664
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=92.33 E-value=3 Score=43.09 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=68.9
Q ss_pred eEEccCCCCCce-eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 72 KLEFVDEVFGPE-SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 72 e~l~~~~l~gPE-~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
++.+.+ ..+|- ++.+|++|+++-+...||.|..|+.+..... +..+... .| ++....|+.
T Consensus 131 ~~~lrg-h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~-~tl~~v~----k~-------------n~~~~s~i~ 191 (933)
T KOG1274|consen 131 EKVLRG-HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS-KTLTGVD----KD-------------NEFILSRIC 191 (933)
T ss_pred heeecc-cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh-hhcccCC----cc-------------cccccccee
Confidence 444444 44553 6789999999999999999999998765211 1111110 11 111223333
Q ss_pred -eEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEE
Q 039124 151 -GLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIF 207 (259)
Q Consensus 151 -Gl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~Iy 207 (259)
=+++.+++|.|.+.-....+..++.++.+.. ..-..+...- -.+++..+|+|.-.
T Consensus 192 ~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~-f~Lr~~~~ss-~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 192 TRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ-FKLRDKLSSS-KFSDLQWSPNGKYI 247 (933)
T ss_pred eeeeecCCCCeEEeeccCCeEEEEccCCceeh-eeeccccccc-ceEEEEEcCCCcEE
Confidence 2589998788888766666888888876422 1111111111 27899999998633
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=92.18 E-value=2 Score=41.77 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=43.9
Q ss_pred cCcCCCcc-eEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCC
Q 039124 143 EKWCGRPL-GLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 143 ~~~~grPl-Gl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~ 213 (259)
+++++.|+ -++|.++ |..+..-+..+ |++|+.++.... .+....| .+.-.|+.++|++...|.|..
T Consensus 443 ~~~d~~~ls~v~ysp~-G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~g---s~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 443 IHTDNEQLSVVRYSPD-GAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSG---SPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred EEecCCceEEEEEcCC-CCEEEEecCCCeEEEEEECCCCcEEE-EeeeecC---ceeEEeeecCCCceEEeccCc
Confidence 46677787 5688884 77765444433 788887765443 3344555 356778888998888887753
No 113
>PTZ00420 coronin; Provisional
Probab=91.15 E-value=16 Score=36.42 Aligned_cols=114 Identities=9% Similarity=0.015 Sum_probs=65.4
Q ss_pred ccCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 75 FVDEVFGPESLEFDGL-GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~~-G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
+.+.-..-.+++|.+. ++++.++..||.|..|+........ . ...+++| ......+.-..++
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~-~----~i~~p~~------------~L~gH~~~V~sVa 132 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV-K----EIKDPQC------------ILKGHKKKISIID 132 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc-c----ccccceE------------EeecCCCcEEEEE
Confidence 3444456678999985 7889999999999999865321000 0 0000011 0111123446889
Q ss_pred EeCCCCc-EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 154 FNKDTGD-LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 154 ~d~~~G~-L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
|+++ +. ++++-+..| |...|..+++...-.. .. .....++++++|.+.++-+
T Consensus 133 f~P~-g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~----~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 133 WNPM-NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MP----KKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred ECCC-CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cC----CcEEEEEECCCCCEEEEEe
Confidence 9985 65 444433444 5566887765321111 11 2367899999999877644
No 114
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=91.12 E-value=0.17 Score=31.61 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=17.4
Q ss_pred cccccEEEcCCCcEEEecCC
Q 039124 193 LFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 193 ~~~Ndl~vd~dG~IyfTDss 212 (259)
..+++|++|++|+||++=.+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECCCCCEEEEEee
Confidence 47999999999999998654
No 115
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.87 E-value=3.9 Score=36.95 Aligned_cols=70 Identities=21% Similarity=0.202 Sum_probs=46.6
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEE
Q 039124 85 LEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIA 164 (259)
Q Consensus 85 ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~Va 164 (259)
...|.++.++|++.+||..+.+|+.... ..+. ..|.|+ --.+-++++.++.||+|
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~-cVyk--------skcgG~----------------~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYK--------SKCGGG----------------TFVSPVIAPGDGSLYAA 153 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccc-eEEe--------cccCCc----------------eeccceecCCCceEEEE
Confidence 3567889999999999999999987552 1110 013321 11234556645899998
Q ss_pred eCCCceEEEECCCCe
Q 039124 165 DAYYGLLVVGSKGGL 179 (259)
Q Consensus 165 D~~~Gl~~v~~~gg~ 179 (259)
-....+++++++.+.
T Consensus 154 ~t~G~vlavt~~~~~ 168 (354)
T KOG4649|consen 154 ITAGAVLAVTKNPYS 168 (354)
T ss_pred eccceEEEEccCCCC
Confidence 766668999887663
No 116
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.75 E-value=4.6 Score=38.47 Aligned_cols=141 Identities=11% Similarity=0.161 Sum_probs=88.0
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-..+-|.+|-++|..+.||..|+.|..|+.+|.... .|+.... .+-..+++..|+
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~------------------------~W~gvr~-~~v~dlait~Dg 366 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG------------------------NWEGVRD-PKVHDLAITYDG 366 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecCCcchhh------------------------ccccccc-ceeEEEEEcCCC
Confidence 367889999999999999999999999999886210 1322211 223577777753
Q ss_pred CcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC----CCccc--------------c
Q 039124 159 GDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR----YNRVD--------------H 220 (259)
Q Consensus 159 G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~----~~~~~--------------~ 220 (259)
..++..+....+..++.++..-+-+.++.. | ...+.+..||.+..++-... |+..+ |
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~lise~~--~---its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~f 441 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRGLISEEQ--P---ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHF 441 (519)
T ss_pred cEEEEEecccceeeechhhhhhhccccccC--c---eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccce
Confidence 356666666667777665542222443322 2 45677778887666554431 22111 1
Q ss_pred e----------eeeeccCCCceEEEEeCCCCcEEEecCC
Q 039124 221 F----------FILLEGESTGRLLRYDPPTKSNSYCVRW 249 (259)
Q Consensus 221 ~----------~~~~e~~~~GrL~rydp~tg~~~vl~~~ 249 (259)
+ --++++.-.+.+|-.+..+|+.-.++.|
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 0 1245667788999999888876666554
No 117
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=90.69 E-value=1.2 Score=28.19 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=31.5
Q ss_pred CcEEEEeCCCc--eEEEECCCCeEEEeeecCCCCCccccccEEEcC
Q 039124 159 GDLYIADAYYG--LLVVGSKGGLATPLATQAGGKPILFANDLDVHK 202 (259)
Q Consensus 159 G~L~VaD~~~G--l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~ 202 (259)
++||-+|.... |.+.+.+|...++++.+ .+..|++|+||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~----~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISD----DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEES----STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEEC----CCCCcCEEEECC
Confidence 47899998876 67778888877777754 377899999984
No 118
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=90.52 E-value=0.8 Score=34.06 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=19.8
Q ss_pred CccccccEEEcCCCc-EEEecCCC
Q 039124 191 PILFANDLDVHKNGS-IFFTDTSK 213 (259)
Q Consensus 191 pl~~~Ndl~vd~dG~-IyfTDss~ 213 (259)
.+.+||||+++++++ ||++++..
T Consensus 52 g~~~aNGI~~s~~~k~lyVa~~~~ 75 (86)
T PF01731_consen 52 GFSFANGIAISPDKKYLYVASSLA 75 (86)
T ss_pred cCCCCceEEEcCCCCEEEEEeccC
Confidence 367999999999987 99999864
No 119
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=90.01 E-value=0.97 Score=27.65 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=26.3
Q ss_pred cCCCcceEEEeCCCCcEEEEeCCCc-eEEEECCCC
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAYYG-LLVVGSKGG 178 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg 178 (259)
....|.|+++|..++.||-+|...+ |.+.+.+|.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 3456999999997788999999876 566666553
No 120
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.46 E-value=1.8 Score=42.61 Aligned_cols=67 Identities=18% Similarity=0.342 Sum_probs=40.9
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecCCCC-Ccc-------ccccEEEcCCCcEEEecCCCCCCcccceeeeeccCC
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQAGGK-PIL-------FANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGES 229 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~-pl~-------~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~ 229 (259)
+|.+|+++....|+.+|.++|+ ..+....... ... ...++++. +|+||+++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk-~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~------------------ 128 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGK-ELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTL------------------ 128 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCc-eeeEecCCCCcccccccccccccccceEE-CCEEEEEcC------------------
Confidence 4799999887779999999885 3333222110 000 11334444 467887653
Q ss_pred CceEEEEeCCCCcEE
Q 039124 230 TGRLLRYDPPTKSNS 244 (259)
Q Consensus 230 ~GrL~rydp~tg~~~ 244 (259)
.|+|+.+|.+||+..
T Consensus 129 dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 129 DARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEEECCCCCEE
Confidence 357888888877653
No 121
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.30 E-value=1.6 Score=40.41 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=45.2
Q ss_pred EeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceE
Q 039124 154 FNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRL 233 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL 233 (259)
.+. +|.+|+......|+.+|++++.+ .+.....+ .....+.-.+..+|+|||++.. |.+
T Consensus 65 ~~~-dg~v~~~~~~G~i~A~d~~~g~~-~W~~~~~~-~~~~~~~~~~~~~G~i~~g~~~------------------g~~ 123 (370)
T COG1520 65 ADG-DGTVYVGTRDGNIFALNPDTGLV-KWSYPLLG-AVAQLSGPILGSDGKIYVGSWD------------------GKL 123 (370)
T ss_pred Eee-CCeEEEecCCCcEEEEeCCCCcE-EecccCcC-cceeccCceEEeCCeEEEeccc------------------ceE
Confidence 455 58999884444599999999863 34332222 2345666677779999999864 257
Q ss_pred EEEeCCCCcE
Q 039124 234 LRYDPPTKSN 243 (259)
Q Consensus 234 ~rydp~tg~~ 243 (259)
|++|..+|+.
T Consensus 124 y~ld~~~G~~ 133 (370)
T COG1520 124 YALDASTGTL 133 (370)
T ss_pred EEEECCCCcE
Confidence 7777655543
No 122
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=89.29 E-value=2.9 Score=42.20 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=78.7
Q ss_pred CCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCC
Q 039124 69 VTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG 147 (259)
Q Consensus 69 ~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 147 (259)
.+.++++.|.+.-=.|+.|.|+.+.+.||..|..|..|+...+. .+.| .+ | -+
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF--~G-----------------------H-~~ 578 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF--TG-----------------------H-KG 578 (707)
T ss_pred CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe--cC-----------------------C-CC
Confidence 45678899988888899999999988999999999888875542 2222 10 1 12
Q ss_pred CcceEEEeCCCCcEEEEeCCCceE-EEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCC
Q 039124 148 RPLGLRFNKDTGDLYIADAYYGLL-VVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~Gl~-~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~ 213 (259)
.-..|+|.+ .|.-++.-+..|++ ..|..+|. .+. ..-|. -...+.|.+..||+|.++++..
T Consensus 579 ~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~--~v~-~l~~H-t~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 579 PVTALAFSP-CGRYLASGDEDGLIKIWDLANGS--LVK-QLKGH-TGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred ceEEEEEcC-CCceEeecccCCcEEEEEcCCCc--chh-hhhcc-cCceeEEEEecCCCEEEecCCC
Confidence 235789998 48776655555644 44877763 222 22222 3467889999999999998764
No 123
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=89.08 E-value=5.3 Score=36.39 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=58.1
Q ss_pred cceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecC-------CCCCccccccEEEc----CCCcEEEecCCC-CC
Q 039124 149 PLGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQA-------GGKPILFANDLDVH----KNGSIFFTDTSK-RY 215 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~-------~g~pl~~~Ndl~vd----~dG~IyfTDss~-~~ 215 (259)
.+.+..++ +|+++|+-.... |++|++++|++....... ++..+.+-.|..+- ++|+|-+=|-.. ..
T Consensus 146 iNsV~~~~-~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~ 224 (299)
T PF14269_consen 146 INSVDKDD-DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDF 224 (299)
T ss_pred eeeeeecC-CccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCC
Confidence 35777777 489888755544 999998888654333221 12247777888887 777766555421 11
Q ss_pred CcccceeeeeccCCCceEEEEeCCCCcEEEec
Q 039124 216 NRVDHFFILLEGESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 216 ~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~ 247 (259)
.-.....|+++.+|+.+++++++-
T Consensus 225 --------~~~~~s~~~v~~ld~~~~~~~~~~ 248 (299)
T PF14269_consen 225 --------NGTEPSRGLVLELDPETMTVTLVR 248 (299)
T ss_pred --------CCCcCCCceEEEEECCCCEEEEEE
Confidence 123467899999999976665543
No 124
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.86 E-value=1.9 Score=26.39 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=20.7
Q ss_pred CceEEEEeCCCCcEEEecCCCCCcceeEE
Q 039124 230 TGRLLRYDPPTKSNSYCVRWLGFSKWSTI 258 (259)
Q Consensus 230 ~GrL~rydp~tg~~~vl~~~L~~pNGval 258 (259)
.+.|..+|+.+++...-+.--..|.++++
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 45788899988776544444578888876
No 125
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.85 E-value=6.4 Score=38.12 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=44.4
Q ss_pred cCCCcceEEEeCCCCcEEEEeCC-CceEEEECCCCeEEEeeec---CCCCCccccccEEEcCC-------CcEEEecC
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAY-YGLLVVGSKGGLATPLATQ---AGGKPILFANDLDVHKN-------GSIFFTDT 211 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~-~Gl~~v~~~gg~~~~l~~~---~~g~pl~~~Ndl~vd~d-------G~IyfTDs 211 (259)
....|-+|+|.++ |++||+... ..|++|++.++..+.+... .......-+-||+++|+ +.||++-+
T Consensus 28 GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 28 GLNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred CCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 4567999999994 999999874 4588898876654433211 11112345789999876 35888754
No 126
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.63 E-value=7.9 Score=38.92 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=41.9
Q ss_pred cccCcCCCcceEEEeCCCCc-EEEEeCCCc-eEEEECCCCeE---------EEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 141 KHEKWCGRPLGLRFNKDTGD-LYIADAYYG-LLVVGSKGGLA---------TPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 141 ~~~~~~grPlGl~~d~~~G~-L~VaD~~~G-l~~v~~~gg~~---------~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
...+..-+|.|++++++ |. +||+..... +-.+|.+..+. ..++.+++= -..|-..++|.+|+.|.|
T Consensus 315 ~yIPVGKsPHGV~vSPD-GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~ayts 391 (635)
T PRK02888 315 RYVPVPKNPHGVNTSPD-GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTT 391 (635)
T ss_pred EEEECCCCccceEECCC-CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEe
Confidence 33467889999999996 65 566654333 66667654321 223333211 235778899999999977
Q ss_pred c
Q 039124 210 D 210 (259)
Q Consensus 210 D 210 (259)
-
T Consensus 392 l 392 (635)
T PRK02888 392 L 392 (635)
T ss_pred E
Confidence 3
No 127
>PTZ00421 coronin; Provisional
Probab=88.50 E-value=26 Score=34.26 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=50.4
Q ss_pred cCCCCCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 76 VDEVFGPESLEFDGLG-RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G-~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
.+.-..-.+++|.+.+ +++.++..|+.|..|+........ . + ......-..++|
T Consensus 122 ~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~-~----------l--------------~~h~~~V~sla~ 176 (493)
T PTZ00421 122 QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE-V----------I--------------KCHSDQITSLEW 176 (493)
T ss_pred cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE-E----------E--------------cCCCCceEEEEE
Confidence 3333445688999864 678899999999999986542110 0 0 111123468999
Q ss_pred eCCCCcEEEEeCCCc-eEEEECCCCe
Q 039124 155 NKDTGDLYIADAYYG-LLVVGSKGGL 179 (259)
Q Consensus 155 d~~~G~L~VaD~~~G-l~~v~~~gg~ 179 (259)
.++ |+++++-...| |..+|+.++.
T Consensus 177 spd-G~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 177 NLD-GSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred ECC-CCEEEEecCCCEEEEEECCCCc
Confidence 984 88877655555 5566887764
No 128
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=88.41 E-value=4.3 Score=38.59 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=72.2
Q ss_pred EEccCCCCCceeEEEcCC--CCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 73 LEFVDEVFGPESLEFDGL--GRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~--G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
..+.|....--++.|.|. +.-+-|+..||.+.-|+.++.. . +- ..++...|--
T Consensus 211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--~-----------l~------------~l~gH~~RVs 265 (459)
T KOG0272|consen 211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET--P-----------LQ------------DLEGHLARVS 265 (459)
T ss_pred EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc--c-----------hh------------hhhcchhhhe
Confidence 345565566667788774 4457888899998888776641 0 11 2234456667
Q ss_pred eEEEeCCCCcEEEEeCCCceEEE-ECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVV-GSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v-~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
-++|++ +|..+..-.+..=+++ |..++ .+.+.- +|. -+-.-++++.+||.+..|-.-
T Consensus 266 ~VafHP-sG~~L~TasfD~tWRlWD~~tk-~ElL~Q--EGH-s~~v~~iaf~~DGSL~~tGGl 323 (459)
T KOG0272|consen 266 RVAFHP-SGKFLGTASFDSTWRLWDLETK-SELLLQ--EGH-SKGVFSIAFQPDGSLAATGGL 323 (459)
T ss_pred eeeecC-CCceeeecccccchhhcccccc-hhhHhh--ccc-ccccceeEecCCCceeeccCc
Confidence 899999 5998887666654444 66665 244432 332 235789999999999998653
No 129
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.41 E-value=19 Score=33.54 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=69.8
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEE
Q 039124 85 LEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIA 164 (259)
Q Consensus 85 ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~Va 164 (259)
.+++..++.+|.-..+|.|+.++..+.. ..|... |+- .-+.. ....|. .+| ---+++++..++|||.
T Consensus 189 ~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~---~~~-~t~~e----~~~~Wr---PGG-~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKP---WSL-LTDAE----KADGWR---PGG-WQLIAYHAASGRLYVL 255 (342)
T ss_dssp -EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEE---EES-S-HHH----HHTTEE---E-S-SS-EEEETTTTEEEEE
T ss_pred cceECCCCeEEEEecCCEEEEEeccCCc-ccccCc---ccc-cCccc----cccCcC---Ccc-eeeeeeccccCeEEEE
Confidence 3444444446656788999998876653 222211 110 00000 001131 111 1236788767899995
Q ss_pred eC-C---------CceEEEECCCCeEEEeee-cCCCCCccccccEEEcCCCc--EEEecCCCCCCcccceeeeeccCCCc
Q 039124 165 DA-Y---------YGLLVVGSKGGLATPLAT-QAGGKPILFANDLDVHKNGS--IFFTDTSKRYNRVDHFFILLEGESTG 231 (259)
Q Consensus 165 D~-~---------~Gl~~v~~~gg~~~~l~~-~~~g~pl~~~Ndl~vd~dG~--IyfTDss~~~~~~~~~~~~~e~~~~G 231 (259)
-. . .-|+.+|.++++. +.. +.+. -.+.|.|..|.. +|..+. ..|
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~kr--v~Ri~l~~----~~~Si~Vsqd~~P~L~~~~~-----------------~~~ 312 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKR--VARIPLEH----PIDSIAVSQDDKPLLYALSA-----------------GDG 312 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEE--EEEEEEEE----EESEEEEESSSS-EEEEEET-----------------TTT
T ss_pred ecCCCCCCccCCceEEEEEECCCCeE--EEEEeCCC----ccceEEEccCCCcEEEEEcC-----------------CCC
Confidence 31 1 1199999998852 221 1111 256888888765 554443 246
Q ss_pred eEEEEeCCCCcEEEecCCCCCcc
Q 039124 232 RLLRYDPPTKSNSYCVRWLGFSK 254 (259)
Q Consensus 232 rL~rydp~tg~~~vl~~~L~~pN 254 (259)
.|+.||+.||+..--+++|.-.+
T Consensus 313 ~l~v~D~~tGk~~~~~~~lG~~~ 335 (342)
T PF06433_consen 313 TLDVYDAATGKLVRSIEQLGETP 335 (342)
T ss_dssp EEEEEETTT--EEEEE---SSS-
T ss_pred eEEEEeCcCCcEEeehhccCCCc
Confidence 79999999998777777776544
No 130
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=87.82 E-value=9.8 Score=34.84 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=64.4
Q ss_pred CCCcee----EEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEE
Q 039124 79 VFGPES----LEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRF 154 (259)
Q Consensus 79 l~gPE~----ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~ 154 (259)
+.|-|+ +.|+|+|..+-++-.|..|+-|+..+. -+.| |......|.-.++.+
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~-----------------------~~lkgHsgAVM~l~~ 98 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENF-----------------------WVLKGHSGAVMELHG 98 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccce-----------------------eeeccccceeEeeee
Confidence 444444 568899998888899999999986554 1222 122222344568899
Q ss_pred eCCCCcEEE-EeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 155 NKDTGDLYI-ADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 155 d~~~G~L~V-aD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
.++ ++.++ |-..+.++..|.++|+... ...+ --.+.|.++..+-|-.-+.
T Consensus 99 ~~d-~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~-h~~~vNs~~p~rrg~~lv~ 149 (338)
T KOG0265|consen 99 MRD-GSHILSCGTDKTVRGWDAETGKRIR---KHKG-HTSFVNSLDPSRRGPQLVC 149 (338)
T ss_pred ccC-CCEEEEecCCceEEEEecccceeee---hhcc-ccceeeecCccccCCeEEE
Confidence 985 65555 6666779999999886321 1111 1347787776666654443
No 131
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=87.62 E-value=18 Score=34.75 Aligned_cols=120 Identities=16% Similarity=0.104 Sum_probs=73.3
Q ss_pred CCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC-
Q 039124 69 VTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG- 147 (259)
Q Consensus 69 ~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g- 147 (259)
...+.++.+.-..++|+++-.+.. +.+|..+|.|.-|+.-... -.|....++. +- ..-...+
T Consensus 317 eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKk-plf~~~~AHg---v~------------~~~~~~~~ 379 (479)
T KOG0299|consen 317 EESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKK-PLFTSRLAHG---VI------------PELDPVNG 379 (479)
T ss_pred ccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccC-ceeEeecccc---cc------------CCcccccc
Confidence 446778888767899999976666 8999999999999875442 1232222211 00 0001111
Q ss_pred --CcceEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 148 --RPLGLRFNKDTGDLYIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 148 --rPlGl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
.-.+|+.-+ .-+|++.-+..| |+++...-..++.+. ++. -..|.|.|++..+|. |+++
T Consensus 380 ~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~-~ls--~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 380 NFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLY-SLS--LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceee-ecc--cccEEEEEEEccCCCEEEEe
Confidence 224788777 468877766666 666654333334333 221 134899999999999 5554
No 132
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=87.06 E-value=7.1 Score=38.88 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=69.5
Q ss_pred CCCEEEEEcCC------CeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 90 LGRGPYTGLAD------GRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 90 ~G~~~yt~~~~------G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
+|.+|.+|-.+ ..++++++....|+..+-. .....-.|++.- +|.||+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M------------------------~~~R~~~~v~~l--~g~iYa 385 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM------------------------NTKRSDFGVAVL--DGKLYA 385 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCc------------------------cCccccceeEEE--CCEEEE
Confidence 45555555545 3577888877767653211 111122577766 489999
Q ss_pred EeCCCc------eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEe
Q 039124 164 ADAYYG------LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237 (259)
Q Consensus 164 aD~~~G------l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ryd 237 (259)
.-...| +-++||.+.+-+.++.-. ...-.--++.-+|.||+.-....- .+..-.+.+||
T Consensus 386 vGG~dg~~~l~svE~YDp~~~~W~~va~m~----~~r~~~gv~~~~g~iYi~GG~~~~-----------~~~l~sve~YD 450 (571)
T KOG4441|consen 386 VGGFDGEKSLNSVECYDPVTNKWTPVAPML----TRRSGHGVAVLGGKLYIIGGGDGS-----------SNCLNSVECYD 450 (571)
T ss_pred EeccccccccccEEEecCCCCcccccCCCC----cceeeeEEEEECCEEEEEcCcCCC-----------ccccceEEEEc
Confidence 755443 778899987655444221 122233334458899997653220 11345799999
Q ss_pred CCCCcEEEec
Q 039124 238 PPTKSNSYCV 247 (259)
Q Consensus 238 p~tg~~~vl~ 247 (259)
|.|++.+.+.
T Consensus 451 P~t~~W~~~~ 460 (571)
T KOG4441|consen 451 PETNTWTLIA 460 (571)
T ss_pred CCCCceeecC
Confidence 9999887765
No 133
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=86.83 E-value=1.9 Score=26.34 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=23.1
Q ss_pred CCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEe
Q 039124 203 NGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 203 dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl 246 (259)
||++|.|-+..- ....|.|+|++++ +..++|
T Consensus 1 dg~lYGTT~~GG------------~~~~GTvf~~~~~-g~~t~L 31 (34)
T TIGR03803 1 GGTLYGTTSGGG------------ASGFGTLYRLSTA-GGTTVL 31 (34)
T ss_pred CCcEEEEcccCC------------CCCceeEEEEcCC-CCeEEE
Confidence 688999987432 4567999999998 555665
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=86.83 E-value=13 Score=34.35 Aligned_cols=34 Identities=26% Similarity=0.089 Sum_probs=27.5
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
...-=-|++|.++|+.+.|+..|..|..|+.-.+
T Consensus 64 H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 64 HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 3444458999999999999999999999986443
No 135
>PRK01029 tolB translocation protein TolB; Provisional
Probab=86.81 E-value=29 Score=33.02 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=45.7
Q ss_pred eEEEeCCCCc-EE-EEeCC--CceEEEECC--CCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceee
Q 039124 151 GLRFNKDTGD-LY-IADAY--YGLLVVGSK--GGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFI 223 (259)
Q Consensus 151 Gl~~d~~~G~-L~-VaD~~--~Gl~~v~~~--gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~ 223 (259)
..++.++ |+ |+ ++|.. ..|+.++.+ ++..+.+... .+ ........|||+ |+|+...
T Consensus 285 ~p~wSPD-G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~----~~~~p~wSPDG~~Laf~~~~----------- 347 (428)
T PRK01029 285 NPSFSPD-GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YR----NSSCPAWSPDGKKIAFCSVI----------- 347 (428)
T ss_pred CeEECCC-CCEEEEEECCCCCceEEEEECcccccceEEeccC-CC----CccceeECCCCCEEEEEEcC-----------
Confidence 4588885 76 43 34432 237877654 3434444321 11 234678899997 6665432
Q ss_pred eeccCCCceEEEEeCCCCcEEEecCC
Q 039124 224 LLEGESTGRLLRYDPPTKSNSYCVRW 249 (259)
Q Consensus 224 ~~e~~~~GrL~rydp~tg~~~vl~~~ 249 (259)
....+|+.||+++++.+.+..+
T Consensus 348 ----~g~~~I~v~dl~~g~~~~Lt~~ 369 (428)
T PRK01029 348 ----KGVRQICVYDLATGRDYQLTTS 369 (428)
T ss_pred ----CCCcEEEEEECCCCCeEEccCC
Confidence 1124788889888888777644
No 136
>PLN00181 protein SPA1-RELATED; Provisional
Probab=86.73 E-value=41 Score=34.59 Aligned_cols=109 Identities=10% Similarity=0.034 Sum_probs=58.4
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
=.+++|+++|+.+.|+..||.|..|+..... .. ......+. ....+ .....++++.+..+..
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~-~~----~~~~~~~~------------~~~~~-~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESII-KD----GRDIHYPV------------VELAS-RSKLSGICWNSYIKSQ 547 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCccc-cc----ccccccce------------EEecc-cCceeeEEeccCCCCE
Confidence 3468999999988899999999999864310 00 00000000 00011 1223577777633555
Q ss_pred EEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCC
Q 039124 162 YIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTS 212 (259)
Q Consensus 162 ~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss 212 (259)
+++-.+.| |...|..+++.... ..+. -...+++++++ +|.+++|-+.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~~---~~~H-~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVTE---MKEH-EKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEEE---ecCC-CCCEEEEEEcCCCCCEEEEEcC
Confidence 55544555 44458776642221 2221 12467888875 6776666443
No 137
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=86.48 E-value=30 Score=33.55 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=53.1
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
..=.+++|..+|.++.|+..+|.+.-|+.++....++. .|. |--..|+..++ |
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~-------------------------~Hk-gPI~slKWnk~-G 288 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLG-------------------------QHK-GPIFSLKWNKK-G 288 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhh-------------------------ccC-CceEEEEEcCC-C
Confidence 34458999999999999999999999998876332221 111 11247888884 7
Q ss_pred cEEEE-eCCCceEEEECCCCeEEEeee
Q 039124 160 DLYIA-DAYYGLLVVGSKGGLATPLAT 185 (259)
Q Consensus 160 ~L~Va-D~~~Gl~~v~~~gg~~~~l~~ 185 (259)
+-+++ +...-+...|..+|+..+...
T Consensus 289 ~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 289 TYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CEEEeccCCccEEEEeccCceEEEeee
Confidence 65554 333346677877777666554
No 138
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=85.82 E-value=31 Score=32.39 Aligned_cols=103 Identities=24% Similarity=0.288 Sum_probs=61.0
Q ss_pred CCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEE-EEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 78 EVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWET-FAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 78 ~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~-fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
....=|.+.|.|.+.++.++..||.||.|..+.+.... |. +.+ . .| .|| +|.+
T Consensus 147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~--Gh~--~-~c----------------t~G-----~f~p 200 (399)
T KOG0296|consen 147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS--GHN--S-PC----------------TCG-----EFIP 200 (399)
T ss_pred ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec--CCC--C-Cc----------------ccc-----cccC
Confidence 46677888999999999999999999999876532221 21 111 0 12 233 3456
Q ss_pred CCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 157 DTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 157 ~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+ |..+++-...| |.+.++++|+...-.+..++. +.-.+.+..+|...++-
T Consensus 201 d-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~---~~~~~~~~~~~~~~~~g 251 (399)
T KOG0296|consen 201 D-GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGL---ELPCISLNLAGSTLTKG 251 (399)
T ss_pred C-CceEEEEecCceEEEEecCCCceeEEecccccC---cCCccccccccceeEec
Confidence 4 65555444455 667799999644444444443 23344455555544443
No 139
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=85.48 E-value=6.1 Score=37.42 Aligned_cols=57 Identities=16% Similarity=0.094 Sum_probs=31.4
Q ss_pred CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-E-EEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEE
Q 039124 168 YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-I-FFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSY 245 (259)
Q Consensus 168 ~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-I-yfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~v 245 (259)
..++.+|.+++++++|.... | -+.. +..+.++.+ + ||-+. -+|+++|.+|++.++
T Consensus 60 ~nly~lDL~t~~i~QLTdg~-g--~~~~-g~~~s~~~~~~~Yv~~~-------------------~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 60 RNLYLLDLATGEITQLTDGP-G--DNTF-GGFLSPDDRALYYVKNG-------------------RSLRRVDLDTLEERV 116 (386)
T ss_dssp -EEEEEETTT-EEEE---SS----B-TT-T-EE-TTSSEEEEEETT-------------------TEEEEEETTT--EEE
T ss_pred cceEEEEcccCEEEECccCC-C--CCcc-ceEEecCCCeEEEEECC-------------------CeEEEEECCcCcEEE
Confidence 35999999999999997642 2 1122 556666655 4 44432 168889988888876
Q ss_pred ec
Q 039124 246 CV 247 (259)
Q Consensus 246 l~ 247 (259)
+.
T Consensus 117 vy 118 (386)
T PF14583_consen 117 VY 118 (386)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 140
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.40 E-value=22 Score=36.78 Aligned_cols=77 Identities=12% Similarity=0.120 Sum_probs=41.6
Q ss_pred CcEEEEeCCCceEEEECCCCeEEEeeecCCCC----------C---ccccccEEEcCCCcEEEecCCCCCCcccceeeee
Q 039124 159 GDLYIADAYYGLLVVGSKGGLATPLATQAGGK----------P---ILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILL 225 (259)
Q Consensus 159 G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~----------p---l~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~ 225 (259)
+++|+......|+.+|.++|+...-. ..+|. + .....--.|. +|.||+..+..+.. -
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~--------~ 330 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNY--------S 330 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEe-cCCCceeeecccCcCCCcccccccCCEEE-CCEEEEEecccccc--------c
Confidence 47887766666888888888533111 11110 0 0011112222 56777765543211 1
Q ss_pred ccCCCceEEEEeCCCCcEEE
Q 039124 226 EGESTGRLLRYDPPTKSNSY 245 (259)
Q Consensus 226 e~~~~GrL~rydp~tg~~~v 245 (259)
+..+.|.|.-||.+||+..-
T Consensus 331 ~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 331 TDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred ccCCCcEEEEEECCCCcEee
Confidence 12467899999999887653
No 141
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=85.24 E-value=4.6 Score=38.87 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=36.9
Q ss_pred CCCcceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeec--------------CCCCCc-cccccEEEcCCCc-EEE
Q 039124 146 CGRPLGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQ--------------AGGKPI-LFANDLDVHKNGS-IFF 208 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~--------------~~g~pl-~~~Ndl~vd~dG~-Iyf 208 (259)
.+-+..|-+.-|+--|||+....| +.++|...-..-.++.+ +.|+++ ..|+=+-++.||+ +||
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 344567767776678999998888 67777432111122211 122222 2578899999996 999
Q ss_pred ecCCCC-CCcccceeeeeccCCCceEEEEeCCC
Q 039124 209 TDTSKR-YNRVDHFFILLEGESTGRLLRYDPPT 240 (259)
Q Consensus 209 TDss~~-~~~~~~~~~~~e~~~~GrL~rydp~t 240 (259)
|.|-.. |+ ++|.-+.. +..+-++++|-++
T Consensus 391 TnSLys~WD-~qfYP~~~--~~g~~m~~iDvd~ 420 (461)
T PF05694_consen 391 TNSLYSAWD-KQFYPDGV--KNGSWMLKIDVDT 420 (461)
T ss_dssp E----HHHH-HHHSTT--------EEEEEEE-T
T ss_pred Eeecccccc-cccCCCcc--ccccEEEEEEecC
Confidence 998632 22 22322222 1234566666443
No 142
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=84.58 E-value=2.7 Score=41.60 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=63.2
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
.+++|.+|+ +|+++.+| +.++++...+.... .+. + + --+-+-+..|. .|+|||
T Consensus 169 aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql--~s~---------~----------~---dk~I~al~~d~-qg~LWV 221 (671)
T COG3292 169 ALVFDANGR-LWVGTPDG-LSYFDAGRGKALQL--ASP---------P----------L---DKAINALIADV-QGRLWV 221 (671)
T ss_pred eeeeeccCc-EEEecCCc-ceEEccccceEEEc--CCC---------c----------c---hhhHHHHHHHh-cCcEEE
Confidence 467888887 89998887 78888765432211 000 0 0 01123455677 499998
Q ss_pred EeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 164 ADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 164 aD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
. .+.|++..+++|-... ......|....+-+.-|.+|.+||....
T Consensus 222 G-TdqGv~~~e~~G~~~s---n~~~~lp~~~I~ll~qD~qG~lWiGTen 266 (671)
T COG3292 222 G-TDQGVYLQEAEGWRAS---NWGPMLPSGNILLLVQDAQGELWIGTEN 266 (671)
T ss_pred E-eccceEEEchhhcccc---ccCCCCcchheeeeecccCCCEEEeecc
Confidence 7 5789999998874322 2233345556777788889999997764
No 143
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=84.29 E-value=25 Score=33.69 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=42.3
Q ss_pred EEEeCCCCc-EEEEeCCC---ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeeec
Q 039124 152 LRFNKDTGD-LYIADAYY---GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILLE 226 (259)
Q Consensus 152 l~~d~~~G~-L~VaD~~~---Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~e 226 (259)
-+|.++ |. |.++-... .|+.+|..++..+.|. ..+|.. . .=...|||+ |+|+-...
T Consensus 243 P~fspD-G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt-~~~gi~--~--~Ps~spdG~~ivf~Sdr~------------- 303 (425)
T COG0823 243 PAFSPD-GSKLAFSSSRDGSPDIYLMDLDGKNLPRLT-NGFGIN--T--SPSWSPDGSKIVFTSDRG------------- 303 (425)
T ss_pred ccCCCC-CCEEEEEECCCCCccEEEEcCCCCcceecc-cCCccc--c--CccCCCCCCEEEEEeCCC-------------
Confidence 356664 43 33333322 3888998888755543 222211 1 334568897 66663221
Q ss_pred cCCCceEEEEeCCCCcEEEecC
Q 039124 227 GESTGRLLRYDPPTKSNSYCVR 248 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~vl~~ 248 (259)
+.+ ++|+||+++++++.+-.
T Consensus 304 G~p--~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 304 GRP--QIYLYDLEGSQVTRLTF 323 (425)
T ss_pred CCc--ceEEECCCCCceeEeec
Confidence 222 78888888776655543
No 144
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=84.24 E-value=13 Score=37.01 Aligned_cols=61 Identities=25% Similarity=0.320 Sum_probs=39.3
Q ss_pred ceEEEeCCCCcEEEEeCCCceEEEE-CCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC
Q 039124 150 LGLRFNKDTGDLYIADAYYGLLVVG-SKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~Gl~~v~-~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
+-+.-|++ |++||. ..+|+.+.. ++.+....+. --+.+....|.+..|.+|.+|+++....
T Consensus 250 ~ll~qD~q-G~lWiG-TenGl~r~~l~rq~Lq~~~~--~~~l~~S~vnsL~~D~dGsLWv~t~~gi 311 (671)
T COG3292 250 LLLVQDAQ-GELWIG-TENGLWRTRLPRQGLQIPLS--KMHLGVSTVNSLWLDTDGSLWVGTYGGI 311 (671)
T ss_pred eeeecccC-CCEEEe-ecccceeEecCCCCcccccc--ccCCccccccceeeccCCCEeeeccCce
Confidence 44556664 888886 346776554 3334222222 2234566789999999999999988743
No 145
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.14 E-value=3.3 Score=36.23 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=37.2
Q ss_pred CcEEEEeCC--CceEEEECCCCeEEEeee--------cCCCCCccccccEEEcCCC-cEEEecC
Q 039124 159 GDLYIADAY--YGLLVVGSKGGLATPLAT--------QAGGKPILFANDLDVHKNG-SIFFTDT 211 (259)
Q Consensus 159 G~L~VaD~~--~Gl~~v~~~gg~~~~l~~--------~~~g~pl~~~Ndl~vd~dG-~IyfTDs 211 (259)
|.|| |+-. ..|.+++|++|++..+.+ ..++...+-+|++|.++++ ++|+|--
T Consensus 186 G~ly-ANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 186 GELY-ANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cEEE-EeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 6676 3322 259999999998766553 1344456789999999987 7999864
No 146
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=83.91 E-value=21 Score=35.08 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=53.6
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
......|....=.++++.++|..+|++..||.|..|+...+. |+ + ..-+.....-.
T Consensus 312 ~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~---------------~~-~--------~~g~~h~nqI~ 367 (603)
T KOG0318|consen 312 VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGT---------------SD-R--------LAGKGHTNQIK 367 (603)
T ss_pred hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcc---------------cc-c--------cccccccceEE
Confidence 344455666666788888999999999999999999876541 11 0 00011122335
Q ss_pred eEEEeCCCCcEEEEeCCCceEEEECC
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVVGSK 176 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v~~~ 176 (259)
|++... .+.++.+-...-|.+++..
T Consensus 368 ~~~~~~-~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 368 GMAASE-SGELFTIGWDDTLRVISLK 392 (603)
T ss_pred EEeecC-CCcEEEEecCCeEEEEecc
Confidence 787777 4889888777767777653
No 147
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=83.51 E-value=31 Score=33.77 Aligned_cols=105 Identities=11% Similarity=0.095 Sum_probs=63.8
Q ss_pred EEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceE
Q 039124 73 LEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGL 152 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl 152 (259)
+..++.+..=|++.++++|..+.++...++||.++.+.+.... .| ...-|--.++
T Consensus 395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~------------id-------------kS~~~lItdf 449 (668)
T COG4946 395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL------------ID-------------KSEYGLITDF 449 (668)
T ss_pred EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE------------ec-------------ccccceeEEE
Confidence 3445567788899999999988888889999999887663221 11 0112334577
Q ss_pred EEeCCCCcEEEEeC----C--CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEe
Q 039124 153 RFNKDTGDLYIADA----Y--YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFT 209 (259)
Q Consensus 153 ~~d~~~G~L~VaD~----~--~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfT 209 (259)
.+++ +++.+ |=+ | ..|...|.+|+++-.+.++. + .--.-++|+||+ +||-
T Consensus 450 ~~~~-nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~vTT~t-a----~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 450 DWHP-NSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDVTTPT-A----YDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEcC-CceeE-EEecCcceeeeeEEEEecCCCeEEEecCCc-c----cccCcccCCCCcEEEEE
Confidence 7777 36643 422 2 13666688887654444331 1 111235788887 7775
No 148
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=83.33 E-value=5 Score=23.86 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=28.0
Q ss_pred EccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEe
Q 039124 74 EFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWM 107 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~ 107 (259)
.+.+.-..-.+++|.++++.+.++..|+.|..|+
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3455566778999999999999999999998775
No 149
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=83.01 E-value=12 Score=35.69 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=73.1
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
..+++.|.+..=-+++|+|+|..+-|+..|+.+..|+..... ....++ .| -.--.
T Consensus 337 ~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~-~ly~ip-----------------------AH-~nlVS 391 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS-ELYTIP-----------------------AH-SNLVS 391 (459)
T ss_pred EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc-cceecc-----------------------cc-cchhh
Confidence 456667777777899999999999999999988888876542 111111 01 11123
Q ss_pred eEEEeCCCCcEEEEeCCCceEEE-ECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVV-GSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v-~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
.++|.++.|..++.-+|.+..++ ...+.. ...|+. -++ ..-.+++.+||..+.|-+
T Consensus 392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-He~----kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 392 QVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-HEG----KVISLDISPDSQAIATSS 449 (459)
T ss_pred heEecccCCeEEEEcccCcceeeecCCCcccchhhcC-Ccc----ceEEEEeccCCceEEEec
Confidence 78888766888888777776666 444443 222322 233 355899999999888765
No 150
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=82.43 E-value=51 Score=32.49 Aligned_cols=106 Identities=11% Similarity=0.048 Sum_probs=69.1
Q ss_pred CCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 79 VFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 79 l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
-..|+++|+.+++...-++-.||+|..+...+.....++ .| +..-+.+.-+++.++
T Consensus 443 ~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~---------~~--------------~~h~a~iT~vaySpd- 498 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA---------KL--------------LEHRAAITDVAYSPD- 498 (603)
T ss_pred ccccceEEEcCCCCEEEEecccceEEEEEecCCccccee---------ee--------------ecccCCceEEEECCC-
Confidence 367899999999998889999999888777664222211 11 223455678999995
Q ss_pred CcEEE-EeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 159 GDLYI-ADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 159 G~L~V-aD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
|..++ +|+..-++..|.++.+.. .... +---...|.++=.|+....-|-+
T Consensus 499 ~~yla~~Da~rkvv~yd~~s~~~~--~~~w-~FHtakI~~~aWsP~n~~vATGS 549 (603)
T KOG0318|consen 499 GAYLAAGDASRKVVLYDVASREVK--TNRW-AFHTAKINCVAWSPNNKLVATGS 549 (603)
T ss_pred CcEEEEeccCCcEEEEEcccCcee--ccee-eeeeeeEEEEEeCCCceEEEecc
Confidence 76654 688777888888776531 1110 00112567788788776666644
No 151
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.15 E-value=12 Score=34.32 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=39.4
Q ss_pred CcceEEEeCCCCcEEE-EeC------CCceEEEECCCCeEEEe-eecCCC-----------CCccccccEEEcCCCcEEE
Q 039124 148 RPLGLRFNKDTGDLYI-ADA------YYGLLVVGSKGGLATPL-ATQAGG-----------KPILFANDLDVHKNGSIFF 208 (259)
Q Consensus 148 rPlGl~~d~~~G~L~V-aD~------~~Gl~~v~~~gg~~~~l-~~~~~g-----------~pl~~~Ndl~vd~dG~Iyf 208 (259)
.|+-+.+..| |+++| |+. .+|..+++.++.+-+.. .+...| .......-+++++||+|||
T Consensus 163 GpHev~lm~D-GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf 241 (366)
T COG3490 163 GPHEVTLMAD-GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF 241 (366)
T ss_pred CcceeEEecC-CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEE
Confidence 4888888885 87765 443 34555666655543322 221222 1244667899999999999
Q ss_pred ecC
Q 039124 209 TDT 211 (259)
Q Consensus 209 TDs 211 (259)
.--
T Consensus 242 gcQ 244 (366)
T COG3490 242 GCQ 244 (366)
T ss_pred EEE
Confidence 854
No 152
>PRK02888 nitrous-oxide reductase; Validated
Probab=81.87 E-value=28 Score=35.11 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=55.5
Q ss_pred CCCeEEccCCCCCceeEEEcCCCCEEEEEcC-CCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC
Q 039124 69 VTGKLEFVDEVFGPESLEFDGLGRGPYTGLA-DGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG 147 (259)
Q Consensus 69 ~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~-~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 147 (259)
.-...+..+ ..|++++++++|+.+|+... +..|-.|+..... ..|+.....+. |- ......+-
T Consensus 312 ~v~~yIPVG--KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k-~~~~~~~~~~~---~v----------vaevevGl 375 (635)
T PRK02888 312 ALTRYVPVP--KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD-DLFDGKIKPRD---AV----------VAEPELGL 375 (635)
T ss_pred ceEEEEECC--CCccceEECCCCCEEEEeCCCCCcEEEEEChhhh-hhhhccCCccc---eE----------EEeeccCC
Confidence 344556665 79999999999998887654 6677777765431 11111000000 00 11224466
Q ss_pred CcceEEEeCCCCcEEEEeC-CCceEEEECCC
Q 039124 148 RPLGLRFNKDTGDLYIADA-YYGLLVVGSKG 177 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~-~~Gl~~v~~~g 177 (259)
+|+-.+||.+ |+.|++=. ...+.+.+.+.
T Consensus 376 GPLHTaFDg~-G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 376 GPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence 7999999995 99997521 23477777543
No 153
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=81.25 E-value=47 Score=32.55 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=37.9
Q ss_pred cCcCCCcceEEEeCCCCc-EEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc
Q 039124 143 EKWCGRPLGLRFNKDTGD-LYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS 205 (259)
Q Consensus 143 ~~~~grPlGl~~d~~~G~-L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~ 205 (259)
+...|+--.+++++ +|. +.||+-..-|+.+|.++|.++.+-.+..| ..-|.+..++++
T Consensus 398 e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~----lItdf~~~~nsr 456 (668)
T COG4946 398 EKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG----LITDFDWHPNSR 456 (668)
T ss_pred eCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccc----eeEEEEEcCCce
Confidence 34456666778888 476 55566656699999999976655333333 355666666666
No 154
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=80.79 E-value=3.3 Score=23.99 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=12.2
Q ss_pred CceEEEEeCCCCcEE
Q 039124 230 TGRLLRYDPPTKSNS 244 (259)
Q Consensus 230 ~GrL~rydp~tg~~~ 244 (259)
.|+|+.+|.++|+..
T Consensus 15 ~g~l~a~d~~~G~~~ 29 (33)
T smart00564 15 DGTLYALDAKTGEIL 29 (33)
T ss_pred CCEEEEEEcccCcEE
Confidence 478999999888764
No 155
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=80.62 E-value=2.2 Score=23.69 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=15.5
Q ss_pred CccccccEEEcCCCcEEEec
Q 039124 191 PILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 191 pl~~~Ndl~vd~dG~IyfTD 210 (259)
+-+...++..|++|+||++.
T Consensus 3 ~~n~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 3 PNNNIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp SSSCEEEEEE-TTSCEEEEE
T ss_pred CCCeEEEEEEcCCcCEEEEe
Confidence 34567899999999999974
No 156
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.20 E-value=9.7 Score=39.34 Aligned_cols=84 Identities=13% Similarity=0.109 Sum_probs=45.9
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCc------ccceeeeeccCCCc
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNR------VDHFFILLEGESTG 231 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~------~~~~~~~~e~~~~G 231 (259)
+|.||+|+....|+.+|.++|+ +.+.-......-.... .....|..|+.+++..-.. ...-..++-....|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk-~lW~~d~~~~~~~~~~--~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGK-EKWKFDPKLKTEAGRQ--HQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCc-EEEEEcCCCCcccccc--cccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 4799999988889999999986 4443322211000000 1223566666543221000 00001223345578
Q ss_pred eEEEEeCCCCcEE
Q 039124 232 RLLRYDPPTKSNS 244 (259)
Q Consensus 232 rL~rydp~tg~~~ 244 (259)
||+.+|.+||+..
T Consensus 271 ~LiALDA~TGk~~ 283 (764)
T TIGR03074 271 RLIALDADTGKLC 283 (764)
T ss_pred eEEEEECCCCCEE
Confidence 9999999998765
No 157
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=79.56 E-value=47 Score=29.95 Aligned_cols=113 Identities=15% Similarity=0.176 Sum_probs=66.3
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEE-EEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWE-TFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~-~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
.-+.|+.+.++|+ |.|-...+.|..|++..-... .+ +-+|. -....+.++
T Consensus 185 s~VtSlEvs~dG~-ilTia~gssV~Fwdaksf~~lKs~--------k~P~n-------------------V~SASL~P~- 235 (334)
T KOG0278|consen 185 SPVTSLEVSQDGR-ILTIAYGSSVKFWDAKSFGLLKSY--------KMPCN-------------------VESASLHPK- 235 (334)
T ss_pred CCCcceeeccCCC-EEEEecCceeEEeccccccceeec--------cCccc-------------------cccccccCC-
Confidence 4455677777787 566556666777776542110 00 00121 112233564
Q ss_pred CcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEe
Q 039124 159 GDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ryd 237 (259)
.+.|||-...+ ++++|-++|+-... -..| -+.-..-+.+.|||.+|-+-|- +++=|||.-.
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~--~nkg-h~gpVhcVrFSPdGE~yAsGSE---------------DGTirlWQt~ 297 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGS--YNKG-HFGPVHCVRFSPDGELYASGSE---------------DGTIRLWQTT 297 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeee--cccC-CCCceEEEEECCCCceeeccCC---------------CceEEEEEec
Confidence 58899965554 89999988852222 1122 2334678999999999998653 3444677666
Q ss_pred CC
Q 039124 238 PP 239 (259)
Q Consensus 238 p~ 239 (259)
|.
T Consensus 298 ~~ 299 (334)
T KOG0278|consen 298 PG 299 (334)
T ss_pred CC
Confidence 64
No 158
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=79.00 E-value=34 Score=35.71 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=78.7
Q ss_pred ccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 75 FVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
-..++..|+++++|- .++.+|++-....|.....++.. ....+. .. ...|-.++
T Consensus 475 ~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~-~~vl~~-----------------------~~-l~~~r~~~ 529 (877)
T KOG1215|consen 475 CGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS-RKVLVS-----------------------KD-LDLPRSIA 529 (877)
T ss_pred eccCccccCcEEEEeccCCceecccCCceeEEEEccCCc-eeEEEe-----------------------cC-CCCcccee
Confidence 344589999999998 66788898888888777755541 111110 11 14678889
Q ss_pred EeCCCCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcCC-CcEEEecCCCCC
Q 039124 154 FNKDTGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKN-GSIFFTDTSKRY 215 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~d-G~IyfTDss~~~ 215 (259)
+++..|-+|..|... .+.+-..++...+.++.. .+..||++++|-. .++|+.|....+
T Consensus 530 v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~----~~~~p~glt~d~~~~~~yw~d~~~~~ 590 (877)
T KOG1215|consen 530 VDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN----GILWPNGLTIDYETDRLYWADAKLDY 590 (877)
T ss_pred eccccCeeEEecCCCCchhhhhcCCCCCceEEEeC----CccCCCcceEEeecceeEEEcccCCc
Confidence 998778888888764 366666777666666543 1678999999974 569999987653
No 159
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=78.96 E-value=40 Score=35.15 Aligned_cols=105 Identities=23% Similarity=0.296 Sum_probs=69.8
Q ss_pred CCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
.....+.+|. ++.++|++..+..|.+...++..... +|. .....|-|++.|...
T Consensus 437 ~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~-----------~~~--------------~g~~~~~~lavD~~~ 491 (877)
T KOG1215|consen 437 KNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECE-----------LCG--------------DGLCIPEGLAVDWIG 491 (877)
T ss_pred ccceEEEEEecCCEEEEEeccCCeEeeeccCCCccce-----------Eec--------------cCccccCcEEEEecc
Confidence 4445555554 45678888999999988776652110 121 122357899999877
Q ss_pred CcEEEEeCCCceEEE-ECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecCCC
Q 039124 159 GDLYIADAYYGLLVV-GSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDTSK 213 (259)
Q Consensus 159 G~L~VaD~~~Gl~~v-~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDss~ 213 (259)
+++|-+|.......+ +.++....+++... +--+..+++++ .|-+|+||...
T Consensus 492 ~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~----l~~~r~~~v~p~~g~~~wtd~~~ 544 (877)
T KOG1215|consen 492 DNIYWTDEGNCLIEVADLDGSSRKVLVSKD----LDLPRSIAVDPEKGLMFWTDWGQ 544 (877)
T ss_pred CCceecccCCceeEEEEccCCceeEEEecC----CCCccceeeccccCeeEEecCCC
Confidence 899999998875555 44555444555432 23578999999 57799999874
No 160
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=78.90 E-value=35 Score=32.49 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=67.4
Q ss_pred cCCCeEEccCCCCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcC
Q 039124 68 LVTGKLEFVDEVFGPESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWC 146 (259)
Q Consensus 68 L~~~e~l~~~~l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 146 (259)
|.+--..+.|.-..=--++|.+ ..+++.+.-.|..|..|+.+.+.. .... . ..
T Consensus 120 ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea-li~l------------------------~-hp 173 (472)
T KOG0303|consen 120 LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA-LITL------------------------D-HP 173 (472)
T ss_pred cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce-eeec------------------------C-CC
Confidence 4433344455444444577776 456677878888899998776521 1100 0 11
Q ss_pred CCcceEEEeCCCCcEEEEeCC-CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCC
Q 039124 147 GRPLGLRFNKDTGDLYIADAY-YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYN 216 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~-~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~ 216 (259)
..-..+.|.. +|.++++-.. +.|..+|+.+|++..-....+| ..+--..+-.+|.| +|...++++
T Consensus 174 d~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG---~k~~Raifl~~g~i-~tTGfsr~s 239 (472)
T KOG0303|consen 174 DMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG---AKPARAIFLASGKI-FTTGFSRMS 239 (472)
T ss_pred CeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccC---CCcceeEEeccCce-eeecccccc
Confidence 1235788888 5999876544 3588889998853222211233 34556666778884 444444444
No 161
>PHA02713 hypothetical protein; Provisional
Probab=78.88 E-value=45 Score=33.02 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=34.5
Q ss_pred eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCC-CcEEEec
Q 039124 170 LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPT-KSNSYCV 247 (259)
Q Consensus 170 l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~t-g~~~vl~ 247 (259)
+.++||++.+-+.+.. . +....+--++.-+|.||+.-..+. . ..-.-.+.+|||.+ ++.+.+.
T Consensus 434 ve~YDP~td~W~~v~~-m---~~~r~~~~~~~~~~~IYv~GG~~~---~--------~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 434 VIRYDTVNNIWETLPN-F---WTGTIRPGVVSHKDDIYVVCDIKD---E--------KNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred EEEECCCCCeEeecCC-C---CcccccCcEEEECCEEEEEeCCCC---C--------CccceeEEEecCCCCCCeeEcc
Confidence 6778888876444432 1 111222233445689999743211 0 00112478999998 6777654
No 162
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=78.54 E-value=39 Score=28.42 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=57.1
Q ss_pred ceeEEEcCCCCEEEE--EcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCC
Q 039124 82 PESLEFDGLGRGPYT--GLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTG 159 (259)
Q Consensus 82 PE~ia~D~~G~~~yt--~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G 159 (259)
-.+++|.|+|+.+.+ +....+|.-++.++.....| + .+..+.+++.++ |
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~---------------------------~-~~~~n~i~wsP~-G 112 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF---------------------------G-TQPRNTISWSPD-G 112 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee---------------------------c-CCCceEEEECCC-C
Confidence 568999999885433 33455677777653311110 0 122367999995 8
Q ss_pred cEEEEeCC---Cc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 160 DLYIADAY---YG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 160 ~L~VaD~~---~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
+++++-.. .| |...|.+.. +.+... +. ....+++-+|||+.+.|-++
T Consensus 113 ~~l~~~g~~n~~G~l~~wd~~~~--~~i~~~-~~---~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 113 RFLVLAGFGNLNGDLEFWDVRKK--KKISTF-EH---SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred CEEEEEEccCCCcEEEEEECCCC--EEeecc-cc---CcEEEEEEcCCCCEEEEEEe
Confidence 87765322 24 555677644 334332 21 13689999999997776554
No 163
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.49 E-value=55 Score=31.12 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=32.1
Q ss_pred cceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 149 PLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
.+++.+.. ++.+|++ ...|++....++|+.-......++.+- -..++.+.++++.|++
T Consensus 330 l~~v~~~~-d~~~~a~-G~~G~v~~s~D~G~tW~~~~~~~~~~~-~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 330 ILDVGYRS-KKEAWAA-GGSGILLRSTDGGKSWKRDKGADNIAA-NLYSVKFFDDKKGFVL 387 (398)
T ss_pred eEEEEEcC-CCcEEEE-ECCCcEEEeCCCCcceeEccccCCCCc-ceeEEEEcCCCceEEE
Confidence 46788887 4888766 456777777777754333322222211 1225555555555554
No 164
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=78.32 E-value=4.1 Score=25.26 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=18.2
Q ss_pred CCceeEEEcCCCCEEEEEcCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADG 101 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G 101 (259)
..+.+|++|++|++|.++..++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 5688999999999777776655
No 165
>PRK13684 Ycf48-like protein; Provisional
Probab=78.25 E-value=43 Score=30.80 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=19.7
Q ss_pred CcceEEEeCCCCcEEEEeCCCceEEE-ECCCCe
Q 039124 148 RPLGLRFNKDTGDLYIADAYYGLLVV-GSKGGL 179 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~Gl~~v-~~~gg~ 179 (259)
...++++.+ +|.+|++. ..|.+++ +.++|+
T Consensus 216 ~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 216 RLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceeeeEcC-CCCEEEEe-cCCEEEEccCCCCC
Confidence 346888887 48888774 3576666 456664
No 166
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=77.05 E-value=14 Score=35.81 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=27.2
Q ss_pred CCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCc
Q 039124 80 FGPESLEFDGLG-RGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 80 ~gPE~ia~D~~G-~~~yt~~~~G~I~ri~~~~~ 111 (259)
.-|-++-+.+++ +++++|..+++|..|+-..+
T Consensus 300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred CCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence 567888888877 88999999999999987544
No 167
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=76.28 E-value=43 Score=31.68 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=14.3
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCC
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGE 109 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~ 109 (259)
+|++ .+|+ +|+-...|+++.++.+
T Consensus 204 DIi~-~kGk-fYAvD~~G~l~~i~~~ 227 (373)
T PLN03215 204 DIIV-HKGQ-TYALDSIGIVYWINSD 227 (373)
T ss_pred EEEE-ECCE-EEEEcCCCeEEEEecC
Confidence 4444 3565 5665556777777754
No 168
>PHA02713 hypothetical protein; Provisional
Probab=76.28 E-value=21 Score=35.32 Aligned_cols=78 Identities=8% Similarity=0.001 Sum_probs=47.7
Q ss_pred eEEEeCCCCcEEEEeCCC-------ceEEEECCC-CeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCccccee
Q 039124 151 GLRFNKDTGDLYIADAYY-------GLLVVGSKG-GLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFF 222 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~-------Gl~~v~~~g-g~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~ 222 (259)
|++.- +|.|||.-... .+.++||++ .+-+.+. .. |..+..--++.-+|.||+.-...
T Consensus 458 ~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-~m---~~~r~~~~~~~~~~~iyv~Gg~~--------- 522 (557)
T PHA02713 458 GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT-TT---ESRLSALHTILHDNTIMMLHCYE--------- 522 (557)
T ss_pred cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-cc---CcccccceeEEECCEEEEEeeec---------
Confidence 56655 37999985432 256789998 5554443 22 22233334444488999964321
Q ss_pred eeeccCCCceEEEEeCCCCcEEEecCC
Q 039124 223 ILLEGESTGRLLRYDPPTKSNSYCVRW 249 (259)
Q Consensus 223 ~~~e~~~~GrL~rydp~tg~~~vl~~~ 249 (259)
....+-+|||.|++.+.+...
T Consensus 523 ------~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 523 ------SYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred ------ceeehhhcCcccccccchhhh
Confidence 112578999999998877643
No 169
>PTZ00420 coronin; Provisional
Probab=75.85 E-value=90 Score=31.21 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=48.4
Q ss_pred CCceeEEEcCCCCEE-EEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGP-YTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~-yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
..-.+++|.+++..+ .++..||.|..|+..... ..+. + .+ ......+.|++ +
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~----------------------i--~~-~~~V~Slswsp-d 178 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQ----------------------I--NM-PKKLSSLKWNI-K 178 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEE----------------------E--ec-CCcEEEEEECC-C
Confidence 445689999987644 577889999999986542 1110 0 11 12356899999 4
Q ss_pred CcEEEEeCCCc-eEEEECCCCe
Q 039124 159 GDLYIADAYYG-LLVVGSKGGL 179 (259)
Q Consensus 159 G~L~VaD~~~G-l~~v~~~gg~ 179 (259)
|.++++-...+ |..+|+.+++
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCc
Confidence 89887655444 6777988774
No 170
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=75.23 E-value=23 Score=34.18 Aligned_cols=67 Identities=24% Similarity=0.247 Sum_probs=47.1
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
++|+.++|+.+.|+-.+..|..|+.+...... .+...++--.+|+|-..+.+||.
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~-------------------------~~~ghr~~V~~L~fr~gt~~lys 261 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK-------------------------VFKGHRGAVSSLAFRKGTSELYS 261 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccchhh-------------------------cccccccceeeeeeecCccceee
Confidence 67888899977788888888888877642110 11244566678999877789999
Q ss_pred EeCCCceEEEEC
Q 039124 164 ADAYYGLLVVGS 175 (259)
Q Consensus 164 aD~~~Gl~~v~~ 175 (259)
+-+..++-.++.
T Consensus 262 ~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 262 ASADRSVKVWSI 273 (479)
T ss_pred eecCCceEEEeh
Confidence 877777655554
No 171
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=74.93 E-value=69 Score=29.44 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=46.6
Q ss_pred CCcceEEEeCCCCcEEEEeCCCceEE-EECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeee
Q 039124 147 GRPLGLRFNKDTGDLYIADAYYGLLV-VGSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFIL 224 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~~Gl~~-v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~ 224 (259)
..-+.++|.| +|.-+++-+..+..+ +|....+ +..+..+ .-..-.+.+++...|++.|.-.. +|.- .+++.
T Consensus 230 sDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~---~~~~gitSv~FS~SGRlLfagy~-d~~c--~vWDt 302 (343)
T KOG0286|consen 230 SDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHD---SIICGITSVAFSKSGRLLFAGYD-DFTC--NVWDT 302 (343)
T ss_pred cccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccC---cccCCceeEEEcccccEEEeeec-CCce--eEeec
Confidence 3457899999 588888766666433 3555432 2222211 22345799999999998887532 2221 13444
Q ss_pred eccCCCceEE
Q 039124 225 LEGESTGRLL 234 (259)
Q Consensus 225 ~e~~~~GrL~ 234 (259)
+.++..|-|.
T Consensus 303 lk~e~vg~L~ 312 (343)
T KOG0286|consen 303 LKGERVGVLA 312 (343)
T ss_pred cccceEEEee
Confidence 5444444443
No 172
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=74.92 E-value=76 Score=29.91 Aligned_cols=114 Identities=15% Similarity=0.203 Sum_probs=65.0
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
-++.|..+|.++-|+..+|.|..+....+. ..+.. ...++.--=|+.++. +.++
T Consensus 110 t~~~FshdgtlLATGdmsG~v~v~~~stg~-~~~~~------------------------~~e~~dieWl~WHp~-a~il 163 (399)
T KOG0296|consen 110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGG-EQWKL------------------------DQEVEDIEWLKWHPR-AHIL 163 (399)
T ss_pred EEEEEccCceEEEecCCCccEEEEEcccCc-eEEEe------------------------ecccCceEEEEeccc-ccEE
Confidence 356788899999999999999988776542 11111 111222223556663 6666
Q ss_pred EEeCCCc-eEEEECCC-CeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCC
Q 039124 163 IADAYYG-LLVVGSKG-GLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPT 240 (259)
Q Consensus 163 VaD~~~G-l~~v~~~g-g~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~t 240 (259)
.|-+..| ++...... +..+.+. |. -...+-..+-|||.-.+|-.. +|.|..+||+|
T Consensus 164 lAG~~DGsvWmw~ip~~~~~kv~~----Gh-~~~ct~G~f~pdGKr~~tgy~-----------------dgti~~Wn~kt 221 (399)
T KOG0296|consen 164 LAGSTDGSVWMWQIPSQALCKVMS----GH-NSPCTCGEFIPDGKRILTGYD-----------------DGTIIVWNPKT 221 (399)
T ss_pred EeecCCCcEEEEECCCcceeeEec----CC-CCCcccccccCCCceEEEEec-----------------CceEEEEecCC
Confidence 6655555 44443332 4333332 21 224556667777875555432 46777788887
Q ss_pred CcEE
Q 039124 241 KSNS 244 (259)
Q Consensus 241 g~~~ 244 (259)
++..
T Consensus 222 g~p~ 225 (399)
T KOG0296|consen 222 GQPL 225 (399)
T ss_pred Ccee
Confidence 7544
No 173
>PLN00181 protein SPA1-RELATED; Provisional
Probab=74.59 E-value=1.1e+02 Score=31.52 Aligned_cols=73 Identities=10% Similarity=0.136 Sum_probs=45.3
Q ss_pred ceeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 82 PESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 82 PE~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
..+++|.+ .+..+.++..||.|..|+........ ......+.-.+++|++.+++
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~-------------------------~~~~H~~~V~~l~~~p~~~~ 589 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT-------------------------EMKEHEKRVWSIDYSSADPT 589 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE-------------------------EecCCCCCEEEEEEcCCCCC
Confidence 45788876 46778899999999999876542110 00111233468889863477
Q ss_pred EEEEeCCCc-eEEEECCCCe
Q 039124 161 LYIADAYYG-LLVVGSKGGL 179 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~ 179 (259)
++++-+..| +...|..++.
T Consensus 590 ~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 590 LLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred EEEEEcCCCEEEEEECCCCc
Confidence 776655555 5555776553
No 174
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=73.86 E-value=19 Score=33.82 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=45.9
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEe--CCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWM--GENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~--~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
++||+++|.++-|+...|+|.|+- ++|+..-+|- |+ ..|-+-..|+|+++ +.+
T Consensus 178 alafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR-----RG-------------------~~~~~IySL~Fs~d-s~~ 232 (391)
T KOG2110|consen 178 ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR-----RG-------------------TYPVSIYSLSFSPD-SQF 232 (391)
T ss_pred EEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee-----CC-------------------ceeeEEEEEEECCC-CCe
Confidence 689999999999999999999974 3444322221 00 11445568999995 787
Q ss_pred EEEeCCC---ceEEEEC
Q 039124 162 YIADAYY---GLLVVGS 175 (259)
Q Consensus 162 ~VaD~~~---Gl~~v~~ 175 (259)
+.|-+.. +|||++.
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 7776555 4788863
No 175
>PHA03098 kelch-like protein; Provisional
Probab=73.07 E-value=88 Score=30.35 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=44.2
Q ss_pred CCcEEEEeCCC---------ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccC
Q 039124 158 TGDLYIADAYY---------GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGE 228 (259)
Q Consensus 158 ~G~L~VaD~~~---------Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~ 228 (259)
++.|||..... .++++|+++++.+.+.. .+....+.-.+.-+|.||+.-.... ..
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~~r~~~~~~~~~~~iyv~GG~~~------------~~ 500 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS----LNFPRINASLCIFNNKIYVVGGDKY------------EY 500 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC----CCcccccceEEEECCEEEEEcCCcC------------Cc
Confidence 37899875432 27888998876554432 1222223333334788988653221 01
Q ss_pred CCceEEEEeCCCCcEEEecC
Q 039124 229 STGRLLRYDPPTKSNSYCVR 248 (259)
Q Consensus 229 ~~GrL~rydp~tg~~~vl~~ 248 (259)
....+++||+.+++.+.+.+
T Consensus 501 ~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 501 YINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ccceeEEEeCCCCEEEecCC
Confidence 13479999999988877643
No 176
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=72.91 E-value=81 Score=33.07 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=24.9
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGE 109 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~ 109 (259)
|=-.|++|++|..++|.-.+|-|.+|+..
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~ 43 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTN 43 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecC
Confidence 45689999999999999999999998754
No 177
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=72.86 E-value=37 Score=35.78 Aligned_cols=131 Identities=12% Similarity=0.135 Sum_probs=75.2
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
-+++|++++.++.+.-.|++|+.|+...- +..+ ..+..-+-+.|+.||+ .|..+
T Consensus 133 ~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--~~~~-----------------------vl~~H~s~VKGvs~DP-~Gky~ 186 (942)
T KOG0973|consen 133 LDVNWSPDDSLLVSVSLDNSVIIWNAKTF--ELLK-----------------------VLRGHQSLVKGVSWDP-IGKYF 186 (942)
T ss_pred ceeccCCCccEEEEecccceEEEEccccc--eeee-----------------------eeecccccccceEECC-ccCee
Confidence 36899999997777888999999986432 1111 1123346688999999 48877
Q ss_pred EEeCCCceEEE-E-CCCCeEEEeeecCCCC-CccccccEEEcCCCcEEEecCCCC--------CCcccce--eeeeccCC
Q 039124 163 IADAYYGLLVV-G-SKGGLATPLATQAGGK-PILFANDLDVHKNGSIFFTDTSKR--------YNRVDHF--FILLEGES 229 (259)
Q Consensus 163 VaD~~~Gl~~v-~-~~gg~~~~l~~~~~g~-pl~~~Ndl~vd~dG~IyfTDss~~--------~~~~~~~--~~~~e~~~ 229 (259)
..-+..+-++| . .+-+....+....+.. --.+.--+.-.|||....+--+-+ .+|..|- ..+..|..
T Consensus 187 ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~ 266 (942)
T KOG0973|consen 187 ASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA 266 (942)
T ss_pred eeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC
Confidence 66666664444 2 2233223333222211 123556677788888665432211 2233333 33455555
Q ss_pred CceEEEEeCC
Q 039124 230 TGRLLRYDPP 239 (259)
Q Consensus 230 ~GrL~rydp~ 239 (259)
.=++.||+|+
T Consensus 267 p~evvrFnP~ 276 (942)
T KOG0973|consen 267 PVEVVRFNPK 276 (942)
T ss_pred ceEEEEeChH
Confidence 5677777764
No 178
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=72.31 E-value=43 Score=33.80 Aligned_cols=125 Identities=13% Similarity=0.111 Sum_probs=66.5
Q ss_pred EEcCCCCEE-EEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEE
Q 039124 86 EFDGLGRGP-YTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIA 164 (259)
Q Consensus 86 a~D~~G~~~-yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~Va 164 (259)
+..|+|+++ |..+.+=+|+|+.+++. ...... + +...+... ..-+-|..+...++++
T Consensus 389 aiSPdg~~Ia~st~~~~~iy~L~~~~~-vk~~~v----------~---------~~~~~~~~--a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 389 AISPDGNLIAISTVSRTKIYRLQPDPN-VKVINV----------D---------DVPLALLD--ASAISFTIDKNKLFLV 446 (691)
T ss_pred ccCCCCCEEEEeeccceEEEEeccCcc-eeEEEe----------c---------cchhhhcc--ceeeEEEecCceEEEE
Confidence 456889866 55667889999999774 222110 0 00111111 1233444321233333
Q ss_pred e-CCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEE-EecCCCCCCcccceeeeeccCCCceEEEEeCCCCc
Q 039124 165 D-AYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIF-FTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKS 242 (259)
Q Consensus 165 D-~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~Iy-fTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~ 242 (259)
- ...-+..++.++...+.+.....-......+-+++.++|+-+ +.++ .|.++.||.++++
T Consensus 447 s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t------------------~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 447 SKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST------------------RGQIFVYNLETLE 508 (691)
T ss_pred ecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec------------------cceEEEEEcccce
Confidence 2 223467776665543334332222234467889999999833 3322 3578888888777
Q ss_pred EEEecCCC
Q 039124 243 NSYCVRWL 250 (259)
Q Consensus 243 ~~vl~~~L 250 (259)
.+.+.-.|
T Consensus 509 ~~~l~~rl 516 (691)
T KOG2048|consen 509 SHLLKVRL 516 (691)
T ss_pred eecchhcc
Confidence 77666433
No 179
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=72.14 E-value=42 Score=32.98 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=45.4
Q ss_pred ceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCC
Q 039124 150 LGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~ 213 (259)
.+.+|++.+-+|+|.=...+++..+++++....-..-+++..-++.-.+++.++|.+.-.||+.
T Consensus 204 ~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G 267 (626)
T KOG2106|consen 204 FLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGG 267 (626)
T ss_pred EEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCc
Confidence 4678888656888775555688889988754333333444433788899999999988888764
No 180
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=72.06 E-value=80 Score=28.90 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=19.1
Q ss_pred CcceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEee
Q 039124 148 RPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLA 184 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~ 184 (259)
|--.|.|.+ +++||++. ..|.+++.......+.+.
T Consensus 188 riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 188 RIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp -EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred eehhceecC-CCCEEEEe-CCcEEEEccCCCCccccc
Confidence 334788998 49999876 456666654333344443
No 181
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=71.56 E-value=28 Score=30.96 Aligned_cols=62 Identities=26% Similarity=0.520 Sum_probs=35.5
Q ss_pred CCCcceEEEeCCCCcEEEEeC------CCceEEEECCCCeEE----EeeecCCCCCccccc---cEEEcCCCcEEEec
Q 039124 146 CGRPLGLRFNKDTGDLYIADA------YYGLLVVGSKGGLAT----PLATQAGGKPILFAN---DLDVHKNGSIFFTD 210 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~------~~Gl~~v~~~gg~~~----~l~~~~~g~pl~~~N---dl~vd~dG~IyfTD 210 (259)
-|+|+-+++..+ |-+-|.+. ..|-|.+|.++-.+. .+.. ..| |+..|. ++.|++||+|+..+
T Consensus 81 Tg~~lDlAI~G~-GFF~V~~~~G~~yTR~G~F~~d~~G~Lvt~~G~~vlg-~~g-pI~lp~~~~~i~I~~dG~I~~~~ 155 (253)
T PRK12689 81 TKNPLDVAIDGD-AFLAVQTPQGERYTRDGALEINAQGQLVTSDGYPVLG-TGG-PITFQPTDTGIAISPDGTVSVNE 155 (253)
T ss_pred CCCceeEEECCC-cEEEEEeCCCcEEEeCCceEECCCCCEEcCCCCEeec-CCC-CeEeCCCCCcEEECCCCeEEEec
Confidence 467788877763 54434322 125667776643211 1111 233 777763 79999999996643
No 182
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=71.14 E-value=85 Score=28.83 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=56.9
Q ss_pred EccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 74 EFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
.|.|.-..=.++...|-++.+..+..|..|.-|+.... -|.|- -...++| -.|
T Consensus 95 YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~---------------~cqg~-----------l~~~~~p-i~A 147 (311)
T KOG1446|consen 95 YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK---------------KCQGL-----------LNLSGRP-IAA 147 (311)
T ss_pred EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC---------------CCceE-----------EecCCCc-cee
Confidence 34444444445666665555556666666666654311 13210 1223333 358
Q ss_pred EeCCCCcEEEEeCCC-ceEEEECC---CCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCC
Q 039124 154 FNKDTGDLYIADAYY-GLLVVGSK---GGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSK 213 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~-Gl~~v~~~---gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~ 213 (259)
||+. |-++++-... .|-..|.. .|-.+.+. +.......-+++.+.+||. |.+|+..+
T Consensus 148 fDp~-GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~--i~~~~~~ew~~l~FS~dGK~iLlsT~~s 209 (311)
T KOG1446|consen 148 FDPE-GLIFALANGSELIKLYDLRSFDKGPFTTFS--ITDNDEAEWTDLEFSPDGKSILLSTNAS 209 (311)
T ss_pred ECCC-CcEEEEecCCCeEEEEEecccCCCCceeEc--cCCCCccceeeeEEcCCCCEEEEEeCCC
Confidence 9994 7666554433 24334533 22222222 2223455789999999998 66665543
No 183
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=71.02 E-value=7.8 Score=26.28 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=26.6
Q ss_pred cccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcE
Q 039124 195 ANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSN 243 (259)
Q Consensus 195 ~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~ 243 (259)
..++++.+||+|++.-+.... .......|.||+++ |+.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~----------~~~~~~~l~Rln~D-GsL 40 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNS----------SGNNDFVLARLNAD-GSL 40 (55)
T ss_pred eEEEEECCCCcEEEEEEeecC----------CCcccEEEEEECCC-CCc
Confidence 468999999999987654321 12445579999987 543
No 184
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=71.00 E-value=21 Score=31.46 Aligned_cols=61 Identities=21% Similarity=0.424 Sum_probs=33.5
Q ss_pred CCCcceEEEeCCCCcEEEEeC------CCceEEEECCCCeEE----EeeecCCCCCcccc---ccEEEcCCCcEEE
Q 039124 146 CGRPLGLRFNKDTGDLYIADA------YYGLLVVGSKGGLAT----PLATQAGGKPILFA---NDLDVHKNGSIFF 208 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~------~~Gl~~v~~~gg~~~----~l~~~~~g~pl~~~---Ndl~vd~dG~Iyf 208 (259)
-|+|+-++++.+ |-+-|.+. ..|-|++|.++-.+. .+. ...|.|+..| .++.|++||.|+.
T Consensus 75 Tg~~lDlAI~G~-GFF~V~~~~G~~yTR~G~F~~d~~G~Lvt~~G~~vl-g~~g~pI~lp~~~~~~~I~~dG~i~~ 148 (238)
T PRK12690 75 TGGQFDFAIEGE-GFFMVETPQGERLTRAGSFTPNAEGELVDPDGNRLL-DAGGAPIFIPPDARSVAVGADGTLSA 148 (238)
T ss_pred cCCceeEEECCC-cEEEEEcCCCCEEeeCCCeEECCCCCEEcCCCCEeE-CCCCCccccCCCCceEEECCCCeEEE
Confidence 356666666652 54434321 124566665543111 111 1234477777 3799999999965
No 185
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=70.57 E-value=90 Score=29.93 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=23.1
Q ss_pred eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 170 LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 170 l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
|++++++++..+.+.....+. .--.+.+||+.++-++
T Consensus 308 I~~~~~~g~~~~riT~~~~~~-----~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 308 IYLYDLEGSQVTRLTFSGGGN-----SNPVWSPDGDKIVFES 344 (425)
T ss_pred eEEECCCCCceeEeeccCCCC-----cCccCCCCCCEEEEEe
Confidence 999999998876665433221 1445577887444443
No 186
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=70.28 E-value=36 Score=30.20 Aligned_cols=60 Identities=32% Similarity=0.412 Sum_probs=32.8
Q ss_pred CCCcceEEEeCCCCcEEEEeCC-------CceEEEECCCCeEE----EeeecCCCCCccccc--cEEEcCCCcEEEe
Q 039124 146 CGRPLGLRFNKDTGDLYIADAY-------YGLLVVGSKGGLAT----PLATQAGGKPILFAN--DLDVHKNGSIFFT 209 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~-------~Gl~~v~~~gg~~~----~l~~~~~g~pl~~~N--dl~vd~dG~IyfT 209 (259)
-|+|+-++++. +|-+-|.+.. .|-|++|.+|. +. .+.. .+| |+..|. ++.|++||.|++.
T Consensus 72 Tg~~lDlAI~G-~GFF~V~~~~G~~~YTR~G~F~~d~~G~-L~~~G~~Vl~-~~g-pI~lp~~~~i~I~~dG~I~~~ 144 (252)
T PRK12641 72 TGRNLDLFIKD-NGWLTIKDTNGQEAYTKNGHLKINSKRK-LTVQNNEVIG-NNG-NIIIPKNINLKISSNGVITSI 144 (252)
T ss_pred CCCceeEEEcC-CcEEEEEcCCCCeEEeeCCCeeECCCCC-EEeCCcEecc-CCC-ceEcCCCCcEEECCCceEEEE
Confidence 35666666665 2433333211 24556665543 21 1111 123 677773 7999999999876
No 187
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional
Probab=70.21 E-value=17 Score=32.48 Aligned_cols=63 Identities=22% Similarity=0.458 Sum_probs=36.4
Q ss_pred CCCcceEEEeCCCCcEEEEeC------CCceEEEECCCCeEE----EeeecCCCCCcccc-c--cEEEcCCCcEEEec
Q 039124 146 CGRPLGLRFNKDTGDLYIADA------YYGLLVVGSKGGLAT----PLATQAGGKPILFA-N--DLDVHKNGSIFFTD 210 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~------~~Gl~~v~~~gg~~~----~l~~~~~g~pl~~~-N--dl~vd~dG~IyfTD 210 (259)
-|+|+-+++.. +|-+-|.+. ..|=|++|.++-.++ .+. ..+|.|+..| + .+.|++||.|+.+.
T Consensus 88 Tg~~lDlAI~G-~GfF~V~~~~g~~YTR~G~F~~d~~G~Lvt~~G~~vl-g~~g~pI~~p~~~~~~~i~~dG~I~~~~ 163 (263)
T PRK12636 88 TGRPLDLAISG-DGFFRVGDGDNTAYTRAGNFYLDNEGNIVNADGLYLL-GMNGGRIQIPTDAQSFSIGADGTVSYVD 163 (263)
T ss_pred CCCceeEEEcC-CcEEEEEeCCCCEEEeCCCeEECCCCCEEcCCCCEee-cCCCCceEeCCCCceEEECCCCeEEEEe
Confidence 46777777776 354444331 125667776653211 111 1233477777 2 79999999998763
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=70.11 E-value=56 Score=33.76 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=59.6
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc-eEEEeCCCCcEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL-GLRFNKDTGDLY 162 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl-Gl~~d~~~G~L~ 162 (259)
+++|..+|..+|+|-+.|-+++|..+... . ++-+..|.|. ++.+.++ +++|
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-k--------------------------qfLPRLgs~I~~i~vS~d-s~~~ 307 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGK-K--------------------------QFLPRLGSPILHIVVSPD-SDLY 307 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCC-c--------------------------ccccccCCeeEEEEEcCC-CCeE
Confidence 56777788888888888888888776542 1 2234566664 9999985 8887
Q ss_pred E-EeCCCceEEEECCCCeEEEeeecC-------CCCCccccccEEEcCC-Cc-EEEecC
Q 039124 163 I-ADAYYGLLVVGSKGGLATPLATQA-------GGKPILFANDLDVHKN-GS-IFFTDT 211 (259)
Q Consensus 163 V-aD~~~Gl~~v~~~gg~~~~l~~~~-------~g~pl~~~Ndl~vd~d-G~-IyfTDs 211 (259)
. +-..+-|..+....-+...-+..+ .-.+-.++-.+.+||. +. +|++-+
T Consensus 308 sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~ 366 (792)
T KOG1963|consen 308 SLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHP 366 (792)
T ss_pred EEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCC
Confidence 4 334555665554322222111111 1124567888899982 22 444444
No 189
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=69.73 E-value=43 Score=31.78 Aligned_cols=30 Identities=30% Similarity=0.273 Sum_probs=26.0
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGE 109 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~ 109 (259)
..||++++|.+...+|.+-.+--|||+..+
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred CcceEEEEecccCCEEEecCccEEEEEecC
Confidence 689999999977779999999999999875
No 190
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=69.53 E-value=66 Score=30.65 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=33.7
Q ss_pred cCCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 68 LVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 68 L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
|....+...|.-..=.|+.|..+| ++|++..|++|..|+...+
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccch
Confidence 455667777777777899997666 5999999999999987653
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=69.48 E-value=30 Score=35.02 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=29.0
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.|.-.+=-++||.++|+.+-|-++||+|..+++...
T Consensus 717 ~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 717 VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 343445558999999999999999999999988654
No 192
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=69.19 E-value=59 Score=30.07 Aligned_cols=66 Identities=20% Similarity=0.386 Sum_probs=43.0
Q ss_pred CCCcceEEEeCC-----CCcEEEEeCCCc-eEEEECCCCeE-EEeeecCCCCC--------ccccccEEEcCCCcEEEec
Q 039124 146 CGRPLGLRFNKD-----TGDLYIADAYYG-LLVVGSKGGLA-TPLATQAGGKP--------ILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 146 ~grPlGl~~d~~-----~G~L~VaD~~~G-l~~v~~~gg~~-~~l~~~~~g~p--------l~~~Ndl~vd~dG~IyfTD 210 (259)
...|-||+..+. .|.|+|.....| |-.+|+.+|+. -.|. ..+|.| +.|-|+..-.+...+|||-
T Consensus 243 LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~-~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaA 321 (336)
T TIGR03118 243 LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL-DPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTA 321 (336)
T ss_pred ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec-CCCCCeEEecCeEEeeeCCCcCCCCcceEEEEe
Confidence 556888887542 389999988877 88889886642 3332 334443 4466666555566799985
Q ss_pred CC
Q 039124 211 TS 212 (259)
Q Consensus 211 ss 212 (259)
--
T Consensus 322 Gp 323 (336)
T TIGR03118 322 GP 323 (336)
T ss_pred CC
Confidence 43
No 193
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=68.89 E-value=1.4e+02 Score=30.36 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=44.1
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCCCceEEE-ECCCCeEEEeee-cCCCC---CccccccEEEcCCCcEEEecCCCC
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAYYGLLVV-GSKGGLATPLAT-QAGGK---PILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~~Gl~~v-~~~gg~~~~l~~-~~~g~---pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
.+-+|-+.+.+++ +|.=+++-...|+.++ |...+..-.+.+ ..++. .-...-.+.+-+++.|.-.||...
T Consensus 152 rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~ 226 (691)
T KOG2048|consen 152 RQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGT 226 (691)
T ss_pred cccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCce
Confidence 3457889999999 4775567666785554 776664222222 22221 223566777788888888888754
No 194
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=67.20 E-value=35 Score=35.35 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=62.9
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
.++++|.-++++.++..+|-+..|+-.+..... .+. ....+.++..+...+-+.
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~-----------------------~l~---l~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK-----------------------SLR---LGSSITGIVYHRVSDLLA 550 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcceee-----------------------eec---cCCCcceeeeeehhhhhh
Confidence 378999888889999999999888876652110 011 112245777776434443
Q ss_pred EEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 163 IADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 163 VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
++-....|..||..+. .++.+..|. -+..||+++.+||+=.++
T Consensus 551 ~~~ddf~I~vvD~~t~---kvvR~f~gh-~nritd~~FS~DgrWlis 593 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTR---KVVREFWGH-GNRITDMTFSPDGRWLIS 593 (910)
T ss_pred hhcCceeEEEEEchhh---hhhHHhhcc-ccceeeeEeCCCCcEEEE
Confidence 4434467999997664 345555553 357899999999994433
No 195
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=66.78 E-value=92 Score=29.71 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=53.2
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
-|++|.++|..+.++..|-.+.-|+.+.+.- .| .|.|.+ .| -+.+++.+| |..+
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-~~----------t~KgH~------~W--------VlcvawsPD-gk~i 172 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-LF----------TCKGHK------NW--------VLCVAWSPD-GKKI 172 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCCCc-ce----------eecCCc------cE--------EEEEEECCC-cchh
Confidence 3678889999899999998888898876521 11 244221 13 368899995 8887
Q ss_pred EEeCCCc-eEEEECCCCeEEEeeecCCC
Q 039124 163 IADAYYG-LLVVGSKGGLATPLATQAGG 189 (259)
Q Consensus 163 VaD~~~G-l~~v~~~gg~~~~l~~~~~g 189 (259)
+.-+-.| |...||++|+ .+.....|
T Consensus 173 ASG~~dg~I~lwdpktg~--~~g~~l~g 198 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQ--QIGRALRG 198 (480)
T ss_pred hccccCCeEEEecCCCCC--cccccccC
Confidence 6655556 7777998874 34443433
No 196
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=66.32 E-value=1.1e+02 Score=30.52 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=54.3
Q ss_pred ceEEEeCCCCcEEEEeCCCc------eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceee
Q 039124 150 LGLRFNKDTGDLYIADAYYG------LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFI 223 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~G------l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~ 223 (259)
.|+++. +|.|||+-...| +-+.||.+.+.+.+..- +....+--.+.-+|.+|+.-....
T Consensus 469 ~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m----~~~rs~~g~~~~~~~ly~vGG~~~--------- 533 (571)
T KOG4441|consen 469 FGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM----TSPRSAVGVVVLGGKLYAVGGFDG--------- 533 (571)
T ss_pred ceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccC----ccccccccEEEECCEEEEEecccC---------
Confidence 367666 479999865554 67789998865555321 222344444455778998755211
Q ss_pred eeccCCCceEEEEeCCCCcEEEecCCCCCc
Q 039124 224 LLEGESTGRLLRYDPPTKSNSYCVRWLGFS 253 (259)
Q Consensus 224 ~~e~~~~GrL~rydp~tg~~~vl~~~L~~p 253 (259)
......+-.|||.|.+.+...+ +...
T Consensus 534 ---~~~l~~ve~ydp~~d~W~~~~~-~~~~ 559 (571)
T KOG4441|consen 534 ---NNNLNTVECYDPETDTWTEVTE-PESG 559 (571)
T ss_pred ---ccccceeEEcCCCCCceeeCCC-cccc
Confidence 2334578889999999888776 5443
No 197
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=65.50 E-value=1.1e+02 Score=29.66 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=35.5
Q ss_pred cCCCcceEEEeCCCCcEEEEeCCCceEEEECCCCeE-EEeeecCCCCCccccccEEEcCCCcEEEe
Q 039124 145 WCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLA-TPLATQAGGKPILFANDLDVHKNGSIFFT 209 (259)
Q Consensus 145 ~~grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~-~~l~~~~~g~pl~~~Ndl~vd~dG~IyfT 209 (259)
+.|+-.+++|+.++-.||++.++.-++..|...... ..+.+ +|. ..--.++++.+|..+.|
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D--~G~--v~gts~~~S~ng~ylA~ 404 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD--DGS--VHGTSLCISLNGSYLAT 404 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee--cCc--cceeeeeecCCCceEEe
Confidence 456667899998643556665555588888765432 22222 221 24456777788883333
No 198
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=64.94 E-value=1.4e+02 Score=28.94 Aligned_cols=110 Identities=19% Similarity=0.164 Sum_probs=56.5
Q ss_pred EccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEE
Q 039124 74 EFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLR 153 (259)
Q Consensus 74 l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~ 153 (259)
++.|.-..=-++.+.++.....++..+-.|..|...... +. + . ....-+--.++.
T Consensus 256 ~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~-~---------~--------------~~~h~~~V~~ls 310 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EP-T---------S--------------SRPHEEPVTGLS 310 (506)
T ss_pred hccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cc-c---------c--------------cccccccceeee
Confidence 344544444566666666767777777666666543321 00 0 0 000111124787
Q ss_pred EeCCCCcEEEEeCCCceEEE-ECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 154 FNKDTGDLYIADAYYGLLVV-GSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 154 ~d~~~G~L~VaD~~~Gl~~v-~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
.++ +|+-+++....|-+.+ |..+|. ...+..+-.+ .-....++.|||.|+.|-+.
T Consensus 311 ~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~---v~~ts~~fHpDgLifgtgt~ 367 (506)
T KOG0289|consen 311 LHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD---VEYTSAAFHPDGLIFGTGTP 367 (506)
T ss_pred ecc-CCcEEEEecCCceEEEEEccCCcEEEEEeecccc---ceeEEeeEcCCceEEeccCC
Confidence 888 5777776555554444 444443 2222222111 12456677888888776543
No 199
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=64.79 E-value=15 Score=35.47 Aligned_cols=106 Identities=11% Similarity=0.134 Sum_probs=69.6
Q ss_pred cCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEe
Q 039124 76 VDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFN 155 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d 155 (259)
.|.-..=.++.|..+|.-+.+..-|+.|.-|+.+.+.... . .+..-.|..+.|.
T Consensus 255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~-~-------------------------f~~~~~~~cvkf~ 308 (503)
T KOG0282|consen 255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS-R-------------------------FHLDKVPTCVKFH 308 (503)
T ss_pred hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE-E-------------------------EecCCCceeeecC
Confidence 3333344467777778777777788888888877652111 0 1223357789999
Q ss_pred CCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 156 KDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 156 ~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
+++-++++|-...+ |..+|..+++ ++.+++ .-+...|++.+-++|+=++|-+
T Consensus 309 pd~~n~fl~G~sd~ki~~wDiRs~k---vvqeYd-~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 309 PDNQNIFLVGGSDKKIRQWDIRSGK---VVQEYD-RHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred CCCCcEEEEecCCCcEEEEeccchH---HHHHHH-hhhhheeeeEEccCCceEeeec
Confidence 96448888766554 8999988875 444433 3466788999888888666533
No 200
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=64.33 E-value=1.3e+02 Score=29.92 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=46.8
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
=-.+++|+.|..+|+|..|-.|..|+-.+-..+.-. .+.-.+|+ |..-+.+++.. +|+.
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----fr~l~P~E----------------~h~i~sl~ys~-Tg~~ 228 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS----FRQLQPCE----------------THQINSLQYSV-TGDQ 228 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchh----hhccCccc----------------ccccceeeecC-CCCe
Confidence 346889999999999999999999998765211100 00001343 22235778887 5766
Q ss_pred EEEeCCCc-eEEEECCCCe
Q 039124 162 YIADAYYG-LLVVGSKGGL 179 (259)
Q Consensus 162 ~VaD~~~G-l~~v~~~gg~ 179 (259)
+++-+... ...+|.+|-+
T Consensus 229 iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred EEEEecCcceeEEccCCce
Confidence 65544443 4455777653
No 201
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=64.20 E-value=1.1e+02 Score=29.30 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=80.6
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcC----CCcceEEEeCCC
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWC----GRPLGLRFNKDT 158 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----grPlGl~~d~~~ 158 (259)
..+.|+++|.++-++-.+|+|+-|....... ..+-+.... . .++|.....+ ..++-|++.++
T Consensus 69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~-~~~d~e~~~-------~-----ke~w~v~k~lr~h~~diydL~Ws~d- 134 (434)
T KOG1009|consen 69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRI-FDADTEADL-------N-----KEKWVVKKVLRGHRDDIYDLAWSPD- 134 (434)
T ss_pred EEEEEcCCcCeeeecCCCceEEEEEecCcCC-ccccchhhh-------C-----ccceEEEEEecccccchhhhhccCC-
Confidence 4688999999888888888888886652110 000000000 0 0112221122 24677888874
Q ss_pred CcEEEEeCC-CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCc--------------ccceee
Q 039124 159 GDLYIADAY-YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNR--------------VDHFFI 223 (259)
Q Consensus 159 G~L~VaD~~-~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~--------------~~~~~~ 223 (259)
++..++-+- +-++.+|...|.+.....+ --..+++++-|+-+.-+.+-++.+-.. .+.+..
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~~d----h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~ 210 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAGQLLAILDD----HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA 210 (434)
T ss_pred CceeeeeeccceEEEEEeccceeEeeccc----cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence 666665433 3466777777754333322 234788888888776555555443110 011222
Q ss_pred eeccCCCceEEEEeCCCCcEEEecCCCC-CcceeE
Q 039124 224 LLEGESTGRLLRYDPPTKSNSYCVRWLG-FSKWST 257 (259)
Q Consensus 224 ~~e~~~~GrL~rydp~tg~~~vl~~~L~-~pNGva 257 (259)
-.....-|+++|.--+ .+.......+. .|+|..
T Consensus 211 ~~~~~~e~~s~rLfhD-eTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 211 KAFNEREGKSTRLFHD-ETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred cccCCCCcceeeeeec-CchhhhhhhcccCCCCcE
Confidence 2334556677776543 33344444443 355543
No 202
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=63.69 E-value=19 Score=33.44 Aligned_cols=101 Identities=20% Similarity=0.327 Sum_probs=61.4
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
-++.|.++...+-++..||+|..|.-..+ .|-.. ..-+|.-| -..+.|.++ +.-+
T Consensus 267 lci~FSRDsEMlAsGsqDGkIKvWri~tG---------------~ClRr--------FdrAHtkG-vt~l~FSrD-~Sqi 321 (508)
T KOG0275|consen 267 LCISFSRDSEMLASGSQDGKIKVWRIETG---------------QCLRR--------FDRAHTKG-VTCLSFSRD-NSQI 321 (508)
T ss_pred EEEeecccHHHhhccCcCCcEEEEEEecc---------------hHHHH--------hhhhhccC-eeEEEEccC-cchh
Confidence 46777777777888899999776654332 13200 11122222 246788886 4444
Q ss_pred EEeCCCceEEE-ECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 163 IADAYYGLLVV-GSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 163 VaD~~~Gl~~v-~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
.+.+.....++ ..+.|+ ...+..|. -.+.|+..+.+||+-.+|-|+
T Consensus 322 LS~sfD~tvRiHGlKSGK---~LKEfrGH-sSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 322 LSASFDQTVRIHGLKSGK---CLKEFRGH-SSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred hcccccceEEEeccccch---hHHHhcCc-cccccceEEcCCCCeEEEecC
Confidence 44444456666 345553 33455554 358999999999997777665
No 203
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=62.72 E-value=90 Score=31.28 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=22.1
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGW 113 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~ 113 (259)
.+++.+.-.+-+|++-.+-.|+|++.+.+.|
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrf 167 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF 167 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEcccccc
Confidence 4566665455577777777899999987754
No 204
>PF13964 Kelch_6: Kelch motif
Probab=62.52 E-value=20 Score=22.84 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=26.2
Q ss_pred EEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEec
Q 039124 199 DVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 199 ~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~ 247 (259)
++.-+|+||+.-..... ......+++||+.|++.+.+.
T Consensus 7 ~v~~~~~iyv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNS-----------GKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEEECCEEEEECCCCCC-----------CCccccEEEEcCCCCcEEECC
Confidence 34456788886554321 245568999999999888764
No 205
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.95 E-value=52 Score=30.31 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=25.5
Q ss_pred eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCC
Q 039124 170 LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTS 212 (259)
Q Consensus 170 l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss 212 (259)
-+.+|+++++.-++....++. .|----.+.+||+ +|-|+-.
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~R--HfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGR--HFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred EEEECCCCCcCcEEEecccCc--eeecccccCCCCcEEEeecCC
Confidence 345677776533333334443 4566677889998 7888654
No 206
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=61.27 E-value=1.3e+02 Score=27.47 Aligned_cols=130 Identities=19% Similarity=0.335 Sum_probs=55.5
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
+|.++. ...+.++ ..|.|++-...+..|+..... +...|.|.++.... ++..++
T Consensus 66 ~I~f~~-~~g~ivG-~~g~ll~T~DgG~tW~~v~l~-----------------------~~lpgs~~~i~~l~-~~~~~l 119 (302)
T PF14870_consen 66 SISFDG-NEGWIVG-EPGLLLHTTDGGKTWERVPLS-----------------------SKLPGSPFGITALG-DGSAEL 119 (302)
T ss_dssp EEEEET-TEEEEEE-ETTEEEEESSTTSS-EE---------------------------TT-SS-EEEEEEEE-TTEEEE
T ss_pred EEEecC-CceEEEc-CCceEEEecCCCCCcEEeecC-----------------------CCCCCCeeEEEEcC-CCcEEE
Confidence 455543 3334444 456777776666656652110 12345677776555 356666
Q ss_pred EeCCCceEEEECCCCe-EEEeeecCCCCCcccccc---------EEEcCCCcEEEe-cCCCC-CCccc----ceeeeecc
Q 039124 164 ADAYYGLLVVGSKGGL-ATPLATQAGGKPILFAND---------LDVHKNGSIFFT-DTSKR-YNRVD----HFFILLEG 227 (259)
Q Consensus 164 aD~~~Gl~~v~~~gg~-~~~l~~~~~g~pl~~~Nd---------l~vd~dG~IyfT-Dss~~-~~~~~----~~~~~~e~ 227 (259)
+.....|++= .++|+ -+.+..+..| ..++ +++...|++|.| |.... |..++ .....+.-
T Consensus 120 ~~~~G~iy~T-~DgG~tW~~~~~~~~g----s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf 194 (302)
T PF14870_consen 120 AGDRGAIYRT-TDGGKTWQAVVSETSG----SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGF 194 (302)
T ss_dssp EETT--EEEE-SSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE
T ss_pred EcCCCcEEEe-CCCCCCeeEcccCCcc----eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhcee
Confidence 6443335544 44443 3333333222 2333 455566666665 33322 32211 12223334
Q ss_pred CCCceEEEEeCCCCcEEE
Q 039124 228 ESTGRLLRYDPPTKSNSY 245 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~v 245 (259)
.++|+|+..... |++..
T Consensus 195 ~~~~~lw~~~~G-g~~~~ 211 (302)
T PF14870_consen 195 SPDGNLWMLARG-GQIQF 211 (302)
T ss_dssp -TTS-EEEEETT-TEEEE
T ss_pred cCCCCEEEEeCC-cEEEE
Confidence 567888777743 54443
No 207
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=61.27 E-value=1.1e+02 Score=30.26 Aligned_cols=68 Identities=18% Similarity=0.345 Sum_probs=40.1
Q ss_pred ceEEEeCCCCcEEEEeCCC-ceEEEECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeecc
Q 039124 150 LGLRFNKDTGDLYIADAYY-GLLVVGSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEG 227 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~-Gl~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~ 227 (259)
-||+|.+.+-.|+|.-.+. .|+.+|..... ...|+-+ .| ...+++.++|.+.+.-+
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~---~P---lstvaf~~~G~~L~aG~---------------- 269 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS---HP---LSTVAFSECGTYLCAGN---------------- 269 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccccceeeec---CC---cceeeecCCceEEEeec----------------
Confidence 4999999644555544333 47777754322 2223322 34 35678888887665433
Q ss_pred CCCceEEEEeCCC
Q 039124 228 ESTGRLLRYDPPT 240 (259)
Q Consensus 228 ~~~GrL~rydp~t 240 (259)
..|+|+.||...
T Consensus 270 -s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 270 -SKGELIAYDMRS 281 (673)
T ss_pred -CCceEEEEeccc
Confidence 357888888653
No 208
>PHA03098 kelch-like protein; Provisional
Probab=61.16 E-value=1.6e+02 Score=28.47 Aligned_cols=75 Identities=12% Similarity=-0.001 Sum_probs=42.9
Q ss_pred CCcEEEEeCCC------ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCc
Q 039124 158 TGDLYIADAYY------GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTG 231 (259)
Q Consensus 158 ~G~L~VaD~~~------Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~G 231 (259)
+|.|||.-... -+.++|+.++..+.+.. .|..+-+.-++.-+|.||+.-..... .....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~----lp~~r~~~~~~~~~~~iYv~GG~~~~-----------~~~~~ 406 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPP----LIFPRYNPCVVNVNNLIYVIGGISKN-----------DELLK 406 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCC----cCcCCccceEEEECCEEEEECCcCCC-----------Ccccc
Confidence 37899875432 26778888775443321 12222333344457889986442110 12245
Q ss_pred eEEEEeCCCCcEEEec
Q 039124 232 RLLRYDPPTKSNSYCV 247 (259)
Q Consensus 232 rL~rydp~tg~~~vl~ 247 (259)
.+++|||.+++.+.+.
T Consensus 407 ~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 407 TVECFSLNTNKWSKGS 422 (534)
T ss_pred eEEEEeCCCCeeeecC
Confidence 7899999888776653
No 209
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=60.29 E-value=44 Score=29.76 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=33.7
Q ss_pred CCCcceEEEeCCCCcEEEEeC-------CCceEEEECCCCeEEEeeecCCCC----Ccccc---ccEEEcCCCcEEEe
Q 039124 146 CGRPLGLRFNKDTGDLYIADA-------YYGLLVVGSKGGLATPLATQAGGK----PILFA---NDLDVHKNGSIFFT 209 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~-------~~Gl~~v~~~gg~~~~l~~~~~g~----pl~~~---Ndl~vd~dG~IyfT 209 (259)
-++|+-+++..+ |-+-|.+. ..|-|++|.++- |++ .+|. |+..| .++.|++||.|+..
T Consensus 89 Tg~~lD~AI~G~-GfF~V~~~~G~~~yTR~G~F~~d~~G~----Lvt-~~G~~Vl~pI~vp~~~~~~~I~~dG~I~~~ 160 (260)
T PRK12694 89 TGNSKDVAINGQ-GFFQVLMPDGTTAYTRDGSFQTNAQGQ----LVT-SSGYPLQPAITIPQNATSLTIGKDGTVSVT 160 (260)
T ss_pred CCCcceEEEcCC-cEEEEEcCCCCeEEeeCCCceECCCCC----EEC-CCCCEeccceecCCCcceeEECCCCeEEEe
Confidence 467788887763 54434321 124566766543 222 1222 56566 36999999999874
No 210
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=59.94 E-value=1.7e+02 Score=28.27 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=53.4
Q ss_pred cceEEEeCCCCcEEEEeC-CCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCC---CCcc-----
Q 039124 149 PLGLRFNKDTGDLYIADA-YYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKR---YNRV----- 218 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~-~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~---~~~~----- 218 (259)
+..-++.+| |.=+|+-+ ..++...|.+|... ..-+|.......|+++.+||. ++..+...+ |++.
T Consensus 315 ~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDgn~~----~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 315 VSSCAWCPD-GFRFVTGSPDRTIIMWDLDGNIL----GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR 389 (519)
T ss_pred cceeEEccC-CceeEecCCCCcEEEecCCcchh----hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence 344566674 65556544 34588888887642 234555556789999999998 554433221 3321
Q ss_pred -----cceeeeeccCCCceEEEEeCCCCcEEE
Q 039124 219 -----DHFFILLEGESTGRLLRYDPPTKSNSY 245 (259)
Q Consensus 219 -----~~~~~~~e~~~~GrL~rydp~tg~~~v 245 (259)
+....-+.-..+|++.-++..+.++..
T Consensus 390 ~lise~~~its~~iS~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 390 GLISEEQPITSFSISKDGKLALVNLQDQEIHL 421 (519)
T ss_pred ccccccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence 111122223467778878877666654
No 211
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=59.49 E-value=27 Score=31.02 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=13.8
Q ss_pred Ccccc-ccEEEcCCCcEEE
Q 039124 191 PILFA-NDLDVHKNGSIFF 208 (259)
Q Consensus 191 pl~~~-Ndl~vd~dG~Iyf 208 (259)
|+..| .++.|++||.|+.
T Consensus 148 pI~lp~~~i~i~~dG~i~~ 166 (256)
T PRK12818 148 PINVGNGKFSTDADGNISL 166 (256)
T ss_pred CeEECCCCceECCCCeEEE
Confidence 55554 3899999999966
No 212
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=58.58 E-value=1.3e+02 Score=30.16 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=59.5
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEE-EEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWE-TFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~-~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
.++.+.+...++-+|..+|.|-.|++...... +.-..+. + .+ .........+..|.|.. +| |
T Consensus 179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-----v-----~s-----~pg~~~~~svTal~F~d-~g-L 241 (703)
T KOG2321|consen 179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-----V-----NS-----HPGGDAAPSVTALKFRD-DG-L 241 (703)
T ss_pred eeeeecCccceEEecccCceEEEecchhhhhheeeecccc-----c-----CC-----CccccccCcceEEEecC-Cc-e
Confidence 35566676778899999999999998654211 1100000 0 00 00011122356788875 34 4
Q ss_pred EE-EeCCCc-eEEEECCCCeEEEee-ecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 162 YI-ADAYYG-LLVVGSKGGLATPLA-TQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 162 ~V-aD~~~G-l~~v~~~gg~~~~l~-~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
=+ +-...| ++..|..+.+ ..++ +.....|++....++-+....|+-.|..
T Consensus 242 ~~aVGts~G~v~iyDLRa~~-pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~ 294 (703)
T KOG2321|consen 242 HVAVGTSTGSVLIYDLRASK-PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR 294 (703)
T ss_pred eEEeeccCCcEEEEEcccCC-ceeecccCCccceeeecccccCCCceEEecchH
Confidence 33 333344 7778877654 3333 3333446666655555444456666654
No 213
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=58.47 E-value=49 Score=33.71 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=55.7
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
.-++|.|.-.-=+++++.+.|+.+-++..+|.|..|+-.++.... + . ..| -+.-.
T Consensus 569 ~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~---------~--------------l-~~H-t~ti~ 623 (707)
T KOG0263|consen 569 SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK---------Q--------------L-KGH-TGTIY 623 (707)
T ss_pred EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh---------h--------------h-hcc-cCcee
Confidence 468889877777899999999988899999999999987642110 0 0 122 34446
Q ss_pred eEEEeCCCCcEEEEeCCCc-eEEEEC
Q 039124 151 GLRFNKDTGDLYIADAYYG-LLVVGS 175 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~G-l~~v~~ 175 (259)
.|.|..+ |+++|++.... |...|.
T Consensus 624 SlsFS~d-g~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 624 SLSFSRD-GNVLASGGADNSVRLWDL 648 (707)
T ss_pred EEEEecC-CCEEEecCCCCeEEEEEc
Confidence 7899985 89988776544 444453
No 214
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=57.91 E-value=1.6e+02 Score=27.21 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=65.1
Q ss_pred CCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc
Q 039124 70 TGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP 149 (259)
Q Consensus 70 ~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP 149 (259)
+.++.+.|.--.--+..|-.++. +.|+..|....-|+-+.+.... .+....|.-
T Consensus 136 ~v~r~l~gHtgylScC~f~dD~~-ilT~SGD~TCalWDie~g~~~~-------------------------~f~GH~gDV 189 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLDDNH-ILTGSGDMTCALWDIETGQQTQ-------------------------VFHGHTGDV 189 (343)
T ss_pred eeeeeecCccceeEEEEEcCCCc-eEecCCCceEEEEEcccceEEE-------------------------EecCCcccE
Confidence 44445555444444555644666 8999999999999877652111 111234566
Q ss_pred ceEEEeCCCCcEEEE---eCCCceEEEECCCCe-EEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 150 LGLRFNKDTGDLYIA---DAYYGLLVVGSKGGL-ATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 150 lGl~~d~~~G~L~Va---D~~~Gl~~v~~~gg~-~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
++|.+.+.+++.||. |...-|+ |...+. ++.+-... .-.|.+.+-|+|.-+.|-|-
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklW--D~R~~~c~qtF~ghe-----sDINsv~ffP~G~afatGSD 249 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLW--DVRSGQCVQTFEGHE-----SDINSVRFFPSGDAFATGSD 249 (343)
T ss_pred EEEecCCCCCCeEEecccccceeee--eccCcceeEeecccc-----cccceEEEccCCCeeeecCC
Confidence 788888856899995 4443344 433332 23332111 13688888888887777553
No 215
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=57.85 E-value=1.6e+02 Score=27.33 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=42.5
Q ss_pred eEEEeCCCCcEEEEeCCCc---eEEEECC-CCeEEEeeecCCCCCccccccEEEcCCCc-EEEecCCCCCCcccceeeee
Q 039124 151 GLRFNKDTGDLYIADAYYG---LLVVGSK-GGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDTSKRYNRVDHFFILL 225 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~G---l~~v~~~-gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDss~~~~~~~~~~~~~ 225 (259)
++...+ +.|++.....+ |..++.. +.....+.-...| ...++.-+.+++ ++|+-+|-
T Consensus 331 ~~~~~~--~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g----~v~~~~~~~~~~~~~~~~ss~------------ 392 (414)
T PF02897_consen 331 DVSLFK--DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAG----SVSGVSGDFDSDELRFSYSSF------------ 392 (414)
T ss_dssp EEEEET--TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSS----EEEEEES-TT-SEEEEEEEET------------
T ss_pred EEEEEC--CEEEEEEEECCccEEEEEECCCCcEEeeecCCcce----EEeccCCCCCCCEEEEEEeCC------------
Confidence 565554 46766544444 6666777 5433323211111 123343344443 66665542
Q ss_pred ccCCCceEEEEeCCCCcEEEec
Q 039124 226 EGESTGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 226 e~~~~GrL~rydp~tg~~~vl~ 247 (259)
...+++|+||.++++.+++-
T Consensus 393 --~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 393 --TTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp --TEEEEEEEEETTTTCEEEEE
T ss_pred --CCCCEEEEEECCCCCEEEEE
Confidence 23468999999999999874
No 216
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=57.54 E-value=1.5e+02 Score=28.81 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=29.8
Q ss_pred EEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 152 LRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
+...+ +|+|++... ..+.++|..|..... -..++....+-+|+...++|++.+.-.
T Consensus 153 ~~~l~-nG~ll~~~~-~~~~e~D~~G~v~~~--~~l~~~~~~~HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 153 FKQLP-NGNLLIGSG-NRLYEIDLLGKVIWE--YDLPGGYYDFHHDIDELPNGNLLILAS 208 (477)
T ss_dssp EEE-T-TS-EEEEEB-TEEEEE-TT--EEEE--EE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred eeEcC-CCCEEEecC-CceEEEcCCCCEEEe--eecCCcccccccccEECCCCCEEEEEe
Confidence 55666 599987655 679999998764333 234443345789999999999665443
No 217
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=57.26 E-value=35 Score=21.65 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=21.7
Q ss_pred CcceEEEeCCCCcEEEEeCCCceEEEECCC
Q 039124 148 RPLGLRFNKDTGDLYIADAYYGLLVVGSKG 177 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~Gl~~v~~~g 177 (259)
...++++.. +-+||+|...||..||...
T Consensus 3 ~a~~v~v~g--~yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 3 DARDVAVSG--NYAYVADGNNGLVIVDISN 30 (42)
T ss_pred eEEEEEEEC--CEEEEEeCCCCEEEEECCC
Confidence 345677764 5899999999999998654
No 218
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=57.21 E-value=86 Score=29.17 Aligned_cols=104 Identities=11% Similarity=0.106 Sum_probs=61.1
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
++.|.|...++..+..|+.|.-++-... +..+ . .+....+---..|.|++ +|+.+.
T Consensus 177 ~l~FHPre~ILiS~srD~tvKlFDfsK~--------saKr---A------------~K~~qd~~~vrsiSfHP-sGefll 232 (430)
T KOG0640|consen 177 DLDFHPRETILISGSRDNTVKLFDFSKT--------SAKR---A------------FKVFQDTEPVRSISFHP-SGEFLL 232 (430)
T ss_pred ceeecchhheEEeccCCCeEEEEecccH--------HHHH---H------------HHHhhccceeeeEeecC-CCceEE
Confidence 5667776777777788888877764322 1110 0 01111222234889999 588766
Q ss_pred EeCCCc-eEEEECCCCeEEEeeec-CCCCCccccccEEEcCCCcEEEecCCC
Q 039124 164 ADAYYG-LLVVGSKGGLATPLATQ-AGGKPILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 164 aD~~~G-l~~v~~~gg~~~~l~~~-~~g~pl~~~Ndl~vd~dG~IyfTDss~ 213 (259)
+-...- +...|.+|-+ -+++. .+..--...+++.-.+.|++|+|-|..
T Consensus 233 vgTdHp~~rlYdv~T~Q--cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD 282 (430)
T KOG0640|consen 233 VGTDHPTLRLYDVNTYQ--CFVSANPDDQHTGAITQVRYSSTGSLYVTASKD 282 (430)
T ss_pred EecCCCceeEEecccee--EeeecCcccccccceeEEEecCCccEEEEeccC
Confidence 544443 3444666643 34332 233334567889999999999997653
No 219
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=55.95 E-value=67 Score=29.85 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=23.3
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGEN 110 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~ 110 (259)
.++-+.+.|++|.|+..||-|.-|++-.
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS 292 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVS 292 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeecccc
Confidence 4567778999999999999999998643
No 220
>PHA02790 Kelch-like protein; Provisional
Probab=55.94 E-value=2e+02 Score=27.80 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=42.3
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEe
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ryd 237 (259)
+|.|||.-. .....|+++++-+.+.. . +..+-+.-++.-+|.||+.-.... ......+.+||
T Consensus 407 ~~~IYv~GG--~~e~ydp~~~~W~~~~~-m---~~~r~~~~~~v~~~~IYviGG~~~------------~~~~~~ve~Yd 468 (480)
T PHA02790 407 GRRLFLVGR--NAEFYCESSNTWTLIDD-P---IYPRDNPELIIVDNKLLLIGGFYR------------GSYIDTIEVYN 468 (480)
T ss_pred CCEEEEECC--ceEEecCCCCcEeEcCC-C---CCCccccEEEEECCEEEEECCcCC------------CcccceEEEEE
Confidence 479999842 25667898876554432 1 222333334445889999754321 01123589999
Q ss_pred CCCCcEEEe
Q 039124 238 PPTKSNSYC 246 (259)
Q Consensus 238 p~tg~~~vl 246 (259)
|.+++.+.+
T Consensus 469 ~~~~~W~~~ 477 (480)
T PHA02790 469 NRTYSWNIW 477 (480)
T ss_pred CCCCeEEec
Confidence 998887664
No 221
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=54.66 E-value=73 Score=28.18 Aligned_cols=61 Identities=31% Similarity=0.507 Sum_probs=34.9
Q ss_pred CCCcceEEEeCCCCcEEEEeC-------CCceEEEECCCCeEEE----eeecCCCCCcccc--ccEEEcCCCcEEEe
Q 039124 146 CGRPLGLRFNKDTGDLYIADA-------YYGLLVVGSKGGLATP----LATQAGGKPILFA--NDLDVHKNGSIFFT 209 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~-------~~Gl~~v~~~gg~~~~----l~~~~~g~pl~~~--Ndl~vd~dG~IyfT 209 (259)
-|+|+-+++..+ |-+-|-+. ..|-|++|.++-.+.. +. ..+| |+..| .++.|++||.|+..
T Consensus 74 Tg~~lDlAI~G~-GFF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl-g~~g-pI~lp~~~~i~I~~dG~I~~~ 147 (246)
T PRK12640 74 TGRPLDVALQGD-GWLAVQAPDGSEAYTRNGSLQVDANGQLRTANGLPVL-GDGG-PIAVPPGAKITIGADGTISAL 147 (246)
T ss_pred cCCcceEEECCC-cEEEEEcCCCCEEEEeCCCeeECCCCCEEcCCCCCcc-CCCc-ceecCCCCCEEECCCCEEEEe
Confidence 467777777763 54444321 1256677765432110 11 1223 67666 37999999999775
No 222
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=54.02 E-value=1.1e+02 Score=28.62 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=71.9
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEE-EEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGWE-TFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~-~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
+....+|+.|+.+|+|+.-|++..++.+..... .|..++ ...-.-|.|..+ |+
T Consensus 156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-------------------------~~~IK~I~~s~~-g~ 209 (405)
T KOG1273|consen 156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-------------------------VQAIKQIIVSRK-GR 209 (405)
T ss_pred cccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-------------------------heeeeEEEEecc-Cc
Confidence 444568999999999999999999998764211 111110 111245677764 77
Q ss_pred EEEEeCCCceEEE-ECC-------CCeEEEeeecCCC-CCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCc
Q 039124 161 LYIADAYYGLLVV-GSK-------GGLATPLATQAGG-KPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTG 231 (259)
Q Consensus 161 L~VaD~~~Gl~~v-~~~-------gg~~~~l~~~~~g-~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~G 231 (259)
.++.+....+.++ +.+ .++.+..- ...+ ..-..-|-+.++.+|...+.-+.. .+.+.+.| +..|
T Consensus 210 ~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~-K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~-----aHaLYIWE-~~~G 282 (405)
T KOG1273|consen 210 FLIINTSDRVIRTYEISDIDDEGRDGEVEPEH-KLQDVVNKLQWKKCCFSGDGEYVCAGSAR-----AHALYIWE-KSIG 282 (405)
T ss_pred EEEEecCCceEEEEehhhhcccCccCCcChhH-HHHHHHhhhhhhheeecCCccEEEecccc-----ceeEEEEe-cCCc
Confidence 7777766655444 321 11111100 0000 011235778889999877766532 33444554 5678
Q ss_pred eEEEEeCCCC
Q 039124 232 RLLRYDPPTK 241 (259)
Q Consensus 232 rL~rydp~tg 241 (259)
.|.++=..++
T Consensus 283 sLVKILhG~k 292 (405)
T KOG1273|consen 283 SLVKILHGTK 292 (405)
T ss_pred ceeeeecCCc
Confidence 8888766543
No 223
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=53.26 E-value=1.8e+02 Score=26.54 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=17.6
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeC
Q 039124 85 LEFDGLGRGPYTGLADGRIVRWMG 108 (259)
Q Consensus 85 ia~D~~G~~~yt~~~~G~I~ri~~ 108 (259)
|-++.+|.++|+...|..+-.|-.
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s 39 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYS 39 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEe
Confidence 567788999999888776555543
No 224
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=52.08 E-value=66 Score=29.04 Aligned_cols=66 Identities=15% Similarity=0.081 Sum_probs=43.1
Q ss_pred EEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEEEe
Q 039124 86 EFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYIAD 165 (259)
Q Consensus 86 a~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~VaD 165 (259)
...|+...+.++-.++++++++-+.+.-. .| .+....|--+.++|.+ +|.+|..-
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~TgeEi------------~~------------~nkgh~gpVhcVrFSP-dGE~yAsG 285 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEI------------GS------------YNKGHFGPVHCVRFSP-DGELYASG 285 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccCCcee------------ee------------cccCCCCceEEEEECC-CCceeecc
Confidence 34466677888999999999987655211 01 0112234447999999 59999876
Q ss_pred CCCc---eEEEECC
Q 039124 166 AYYG---LLVVGSK 176 (259)
Q Consensus 166 ~~~G---l~~v~~~ 176 (259)
+..| |++..+.
T Consensus 286 SEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPG 299 (334)
T ss_pred CCCceEEEEEecCC
Confidence 6666 5666654
No 225
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=51.93 E-value=1.1e+02 Score=27.45 Aligned_cols=77 Identities=12% Similarity=0.223 Sum_probs=43.5
Q ss_pred CcEEEEeCC------CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCce
Q 039124 159 GDLYIADAY------YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGR 232 (259)
Q Consensus 159 G~L~VaD~~------~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~Gr 232 (259)
+.|||.-.. .-++++|+++...+.........|....+..++.-+|.||+.=.... ....-.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~------------~~~~~~ 140 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRN------------GKPSNK 140 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCC------------CccCce
Confidence 688886432 23777887766432111222333433444455555788998633211 112346
Q ss_pred EEEEeCCCCcEEEec
Q 039124 233 LLRYDPPTKSNSYCV 247 (259)
Q Consensus 233 L~rydp~tg~~~vl~ 247 (259)
+++||+++++.+.+.
T Consensus 141 v~~yd~~~~~W~~~~ 155 (323)
T TIGR03548 141 SYLFNLETQEWFELP 155 (323)
T ss_pred EEEEcCCCCCeeECC
Confidence 999999988877664
No 226
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=51.87 E-value=17 Score=25.40 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=13.8
Q ss_pred eEEEEeCCCCcEEEec
Q 039124 232 RLLRYDPPTKSNSYCV 247 (259)
Q Consensus 232 rL~rydp~tg~~~vl~ 247 (259)
.+|||||+|+++++.-
T Consensus 42 KIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 42 KIFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCeEEEEE
Confidence 6999999999988753
No 227
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=51.81 E-value=1.8e+02 Score=25.98 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=24.8
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.-.++++||.|+++.++..|..-+-++-.++
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~ 263 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGG 263 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence 3457899999999999998888777776555
No 228
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=51.16 E-value=22 Score=21.56 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=12.9
Q ss_pred CCCceEEEEeCCCCcEE
Q 039124 228 ESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~ 244 (259)
...|+|+.+|.+||+..
T Consensus 7 ~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVL 23 (38)
T ss_dssp TTTSEEEEEETTTTSEE
T ss_pred CCCCEEEEEECCCCCEE
Confidence 34678888998888764
No 229
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.48 E-value=2.1e+02 Score=28.56 Aligned_cols=81 Identities=14% Similarity=0.054 Sum_probs=55.5
Q ss_pred ccCCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcC
Q 039124 67 RLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWC 146 (259)
Q Consensus 67 ~L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 146 (259)
+++.+...-..--..+-+.+++++...+..|+.||.|.-++.... .+.++. ..
T Consensus 247 klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-~t~~~k--------------------------a~ 299 (545)
T PF11768_consen 247 KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-VTLLAK--------------------------AE 299 (545)
T ss_pred ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-eeeeee--------------------------ec
Confidence 466665554442347778899998888999999999999998665 333211 11
Q ss_pred CCcceEEEeCCCCcEEEEeCCCc-eEEEEC
Q 039124 147 GRPLGLRFNKDTGDLYIADAYYG-LLVVGS 175 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~~G-l~~v~~ 175 (259)
-.|.-++++++ |.++++-...| |.-+|.
T Consensus 300 ~~P~~iaWHp~-gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 300 FIPTLIAWHPD-GAIFVVGSEQGELQCFDM 328 (545)
T ss_pred ccceEEEEcCC-CcEEEEEcCCceEEEEEe
Confidence 24888999994 88877666666 444453
No 230
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=50.05 E-value=2.2e+02 Score=26.66 Aligned_cols=121 Identities=13% Similarity=0.220 Sum_probs=67.8
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc-ceEEEeCC-C
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP-LGLRFNKD-T 158 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP-lGl~~d~~-~ 158 (259)
.-....|..+|+-+.+...||.|..|+.... .|-.-+.+ . . ...| +.+-.-++ .
T Consensus 350 yvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt---------------eC~~Tfk~-----~---~-~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 350 YVNEATFTDDGHHIISASSDGTVKVWHGKTT---------------ECLSTFKP-----L---G-TDYPVNSVILLPKNP 405 (508)
T ss_pred cccceEEcCCCCeEEEecCCccEEEecCcch---------------hhhhhccC-----C---C-CcccceeEEEcCCCC
Confidence 3344567778998899999999999987654 13210000 0 0 0011 23333332 2
Q ss_pred CcEEEEeCCCceEEEECCCCeEEEeeec-CCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEe
Q 039124 159 GDLYIADAYYGLLVVGSKGGLATPLATQ-AGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYD 237 (259)
Q Consensus 159 G~L~VaD~~~Gl~~v~~~gg~~~~l~~~-~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ryd 237 (259)
..++||+..+-++.++.+|..++.+.+. -+| --|.| .++.|.|. |++.+-| .|-||++.
T Consensus 406 eh~iVCNrsntv~imn~qGQvVrsfsSGkREg--GdFi~-~~lSpkGe--------------wiYcigE---D~vlYCF~ 465 (508)
T KOG0275|consen 406 EHFIVCNRSNTVYIMNMQGQVVRSFSSGKREG--GDFIN-AILSPKGE--------------WIYCIGE---DGVLYCFS 465 (508)
T ss_pred ceEEEEcCCCeEEEEeccceEEeeeccCCccC--CceEE-EEecCCCc--------------EEEEEcc---CcEEEEEE
Confidence 4678898888899999987655555432 111 11332 23455554 3333333 45788888
Q ss_pred CCCCcEEE
Q 039124 238 PPTKSNSY 245 (259)
Q Consensus 238 p~tg~~~v 245 (259)
-.+|+.+.
T Consensus 466 ~~sG~LE~ 473 (508)
T KOG0275|consen 466 VLSGKLER 473 (508)
T ss_pred eecCceee
Confidence 77776553
No 231
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=49.54 E-value=3.3e+02 Score=28.55 Aligned_cols=110 Identities=17% Similarity=0.111 Sum_probs=64.9
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc-ceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP-LGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP-lGl~~d~~~ 158 (259)
..--+++++.=|+..+.|...|.|-+++.+.+. ..-.+. + .+--.+| .|++.|. .
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi-~r~sf~---------~-------------~~ah~~~V~gla~D~-~ 504 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI-HRKSFG---------D-------------SPAHKGEVTGLAVDG-T 504 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCe-eecccc---------c-------------CccccCceeEEEecC-C
Confidence 344577888889988999999999999987652 210000 0 0111233 5999998 5
Q ss_pred CcEEEEeCCCceEEE-ECCCCeEE-E--eeecCCCCCccccccEEEcCCC--cEEEecCCC
Q 039124 159 GDLYIADAYYGLLVV-GSKGGLAT-P--LATQAGGKPILFANDLDVHKNG--SIFFTDTSK 213 (259)
Q Consensus 159 G~L~VaD~~~Gl~~v-~~~gg~~~-~--l~~~~~g~pl~~~Ndl~vd~dG--~IyfTDss~ 213 (259)
+.+.|+-.+.|++++ |.+++... . +...+.+.-..+.+++....-+ .|.+-|.-+
T Consensus 505 n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t 565 (910)
T KOG1539|consen 505 NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT 565 (910)
T ss_pred CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence 889998888898877 55544210 0 1112223233445554443322 367777664
No 232
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=49.24 E-value=81 Score=27.69 Aligned_cols=67 Identities=24% Similarity=0.395 Sum_probs=42.4
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCC-------CceEEEECCCCeEEEeeec--CCCCCccccc--cEEEcCCCcEEEecCC
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAY-------YGLLVVGSKGGLATPLATQ--AGGKPILFAN--DLDVHKNGSIFFTDTS 212 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~-------~Gl~~v~~~gg~~~~l~~~--~~g~pl~~~N--dl~vd~dG~IyfTDss 212 (259)
..-||||.++++. +|-|-|-|+. .|=++|++.+ +.+.-..+ -+|.|+..|- -+.|..||.|-.-...
T Consensus 72 ~~TgR~LDvaiq~-DGwlaVq~~dG~EaYTRnG~~qI~a~g-~lTiqg~pViG~ggpI~vPp~~~v~I~~DGtIsa~~~g 149 (251)
T COG4787 72 DYTGRPLDVAIQG-DGWLAVQDADGSEAYTRNGNIQIDATG-QLTIQGHPVIGEGGPITVPPGAKVTIAADGTISALNPG 149 (251)
T ss_pred cccCCcceEEEcc-CceEEEEcCCCcchheecCceEECccc-ceecCCCeeecCCCccccCCCceEEEecCceEEeccCC
Confidence 3468999999998 4877775543 3678898776 33221111 2345555554 4677889987665444
No 233
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=49.03 E-value=74 Score=28.29 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=15.0
Q ss_pred Ccccc-ccEEEcCCCcEEEec
Q 039124 191 PILFA-NDLDVHKNGSIFFTD 210 (259)
Q Consensus 191 pl~~~-Ndl~vd~dG~IyfTD 210 (259)
|+..+ .++.|++||.|+..+
T Consensus 146 ~i~~~~~~~~i~~dG~i~~~~ 166 (260)
T PRK12817 146 NTGFDSNNFTVDEDGGISVKN 166 (260)
T ss_pred cccCCCCceEECCCCeEEEec
Confidence 45444 489999999998755
No 234
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=48.31 E-value=1.1e+02 Score=29.85 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=25.5
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.+++|+.+|..+|+...+|+||.|+....
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQN 376 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCc
Confidence 36789999999999999999999998765
No 235
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.06 E-value=2.1e+02 Score=30.37 Aligned_cols=67 Identities=19% Similarity=0.116 Sum_probs=46.4
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCC
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDT 158 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~ 158 (259)
.-=.|+.|++..+++.+...|+.|..|+.+... ..+| ....+|=--|+.++ .
T Consensus 251 nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf--------------------------rrendRFW~laahP-~ 303 (1202)
T KOG0292|consen 251 NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF--------------------------RRENDRFWILAAHP-E 303 (1202)
T ss_pred CCcceEEecCccceeEecCCCccEEEEecccccceeee--------------------------eccCCeEEEEEecC-C
Confidence 334578899988888888999999999886542 1111 12234545688888 4
Q ss_pred CcEEEEeCCCceEEE
Q 039124 159 GDLYIADAYYGLLVV 173 (259)
Q Consensus 159 G~L~VaD~~~Gl~~v 173 (259)
.|||.|-...|++.+
T Consensus 304 lNLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 304 LNLFAAGHDSGMIVF 318 (1202)
T ss_pred cceeeeecCCceEEE
Confidence 999998777774444
No 236
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=47.99 E-value=2e+02 Score=27.90 Aligned_cols=37 Identities=3% Similarity=0.119 Sum_probs=25.6
Q ss_pred cceEEEeCCCCcEEEEeCCC-ceEEEECCCCeEEEeee
Q 039124 149 PLGLRFNKDTGDLYIADAYY-GLLVVGSKGGLATPLAT 185 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~-Gl~~v~~~gg~~~~l~~ 185 (259)
-+++.+++.++.|+|+-... .|++||.+++++..+..
T Consensus 273 ~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 273 INSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred cCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 35899998657777776555 69999987777665554
No 237
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=47.58 E-value=2.1e+02 Score=25.55 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=20.6
Q ss_pred eeEEEcCCCCEEEEEcCCCeEE--EEeCCC
Q 039124 83 ESLEFDGLGRGPYTGLADGRIV--RWMGEN 110 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~--ri~~~~ 110 (259)
.+.+|.+.|.++-|+..|..|. +++.+.
T Consensus 93 yc~~ws~~geliatgsndk~ik~l~fn~dt 122 (350)
T KOG0641|consen 93 YCTAWSPCGELIATGSNDKTIKVLPFNADT 122 (350)
T ss_pred EEEEecCccCeEEecCCCceEEEEeccccc
Confidence 4789999999888888877654 444443
No 238
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=47.50 E-value=41 Score=17.64 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=18.3
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEE
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRW 106 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri 106 (259)
-.++.+.+.+..+.++..+|.|..|
T Consensus 15 i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 15 VTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred eeEEEECCCCCEEEEecCCCeEEEc
Confidence 4577787777777888888877654
No 239
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=47.37 E-value=2.6e+02 Score=26.64 Aligned_cols=102 Identities=10% Similarity=0.078 Sum_probs=59.5
Q ss_pred EEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc-ce
Q 039124 73 LEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP-LG 151 (259)
Q Consensus 73 ~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP-lG 151 (259)
...+|.-.-=+++.|++ ...+|+...|+.|.+|+...++... .-.|+.+ +.
T Consensus 254 vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~---------------------------~~~~~ksl~~ 305 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKS---------------------------TLTTNKSLNC 305 (423)
T ss_pred EEecccccceeeEEEcC-CCceEeecccceEEEEEeeccccee---------------------------eeecCcceeE
Confidence 34455555556788976 4459999999999999986552111 1223444 36
Q ss_pred EEEeCCCCcEEEEeCCC-ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCC
Q 039124 152 LRFNKDTGDLYIADAYY-GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNG 204 (259)
Q Consensus 152 l~~d~~~G~L~VaD~~~-Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG 204 (259)
+...+. -+|++|-... .|...||.++.-..+...+-|.. ++...+.-.|..
T Consensus 306 i~~~~~-~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~-nwVssvkwsp~~ 357 (423)
T KOG0313|consen 306 ISYSPL-SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK-NWVSSVKWSPTN 357 (423)
T ss_pred eecccc-cceeeecCCCCceeecCCCCCCCceeEEeeecch-hhhhheecCCCC
Confidence 777773 6788775544 46666888765333333333321 244444444433
No 240
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=46.85 E-value=54 Score=28.87 Aligned_cols=126 Identities=13% Similarity=-0.014 Sum_probs=58.1
Q ss_pred cccCCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCc
Q 039124 66 SRLVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKW 145 (259)
Q Consensus 66 ~~L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 145 (259)
|-+..+..|..| ..+=.-|+..++|.+|.+. ++.+++.++......+.... .+.+-++++
T Consensus 21 n~~~~a~~iG~g-w~~~~~i~~~P~g~lY~I~--~~~lY~~~~~~~~~~~~~~~----~~~Ig~g~W------------- 80 (229)
T PF14517_consen 21 NWSDRAITIGSG-WNNFRDIAAGPNGRLYAIR--NDGLYRGSPSSSGGNTWDSG----SKQIGDGGW------------- 80 (229)
T ss_dssp -HHHHSEEEESS--TT-SEEEE-TTS-EEEEE--TTEEEEES---STT--HHHH-----EEEE-S-G-------------
T ss_pred CccchhhhcCcc-ccccceEEEcCCceEEEEE--CCceEEecCCccCccccccc----CcccccCcc-------------
Confidence 347788888886 4556678888888854443 44788873221100110000 000111111
Q ss_pred CCCcceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEee----ecCCCCCccccccEEEcCCCcEEEecCCC
Q 039124 146 CGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLA----TQAGGKPILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~----~~~~g~pl~~~Ndl~vd~dG~IyfTDss~ 213 (259)
++=..|.+++ +|.||..+....|++..+-+.....+. ..+.+..-+-.+-|-.+++|.||.-++..
T Consensus 81 -~~F~~i~~d~-~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~dg 150 (229)
T PF14517_consen 81 -NSFKFIFFDP-TGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPDG 150 (229)
T ss_dssp -GG-SEEEE-T-TS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETTE
T ss_pred -cceeEEEecC-CccEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCCC
Confidence 1123788999 699998877655778753221112221 22222334456677788888888766554
No 241
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=46.74 E-value=82 Score=27.27 Aligned_cols=60 Identities=23% Similarity=0.419 Sum_probs=34.4
Q ss_pred CCCcceEEEeCCCCcEEEEeCC-------CceEEEECCCCeEEEeee----cCCCCCcccc-c-cEEEcCCCcEEEe
Q 039124 146 CGRPLGLRFNKDTGDLYIADAY-------YGLLVVGSKGGLATPLAT----QAGGKPILFA-N-DLDVHKNGSIFFT 209 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~-------~Gl~~v~~~gg~~~~l~~----~~~g~pl~~~-N-dl~vd~dG~IyfT 209 (259)
-++|+-+++..+ |-+-|.+.. .|=|++|.++- + ..-. ...| |+..| + .+.|++||+|+..
T Consensus 74 Tg~~lDlAI~G~-GFF~V~~~~G~~~YTR~G~F~~d~~G~-L-t~~G~~Vlg~~g-pI~ip~~~~i~I~~dG~I~~~ 146 (209)
T PRK12643 74 SGRPLDVALQQD-GYLAVQLPDGSEAYTRNGNIQISANGQ-M-TVQGYPLMGDNG-PIDVPPQAAVTIAADGTISAL 146 (209)
T ss_pred CCCceeEEECCC-cEEEEEcCCCCeEEeeCCCceECCCCC-C-cCCCcCcccCCC-ceEcCCCCcEEECCCCeEEEe
Confidence 467788887763 554443321 25567776543 2 1100 1122 66666 2 7999999999764
No 242
>KOG4328 consensus WD40 protein [Function unknown]
Probab=45.98 E-value=1.6e+02 Score=28.61 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=58.8
Q ss_pred eeEEEcC-CC-CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc-ceEEEeCCCC
Q 039124 83 ESLEFDG-LG-RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP-LGLRFNKDTG 159 (259)
Q Consensus 83 E~ia~D~-~G-~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP-lGl~~d~~~G 159 (259)
-+++|.| +. +++-+|...|.|.-|+.+++. +.-++ ....+.-+.| .+|.|.+.+-
T Consensus 190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-------------~d~d~---------v~~f~~hs~~Vs~l~F~P~n~ 247 (498)
T KOG4328|consen 190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-------------KDKDG---------VYLFTPHSGPVSGLKFSPANT 247 (498)
T ss_pred EEEEecccCcceEEEEccCCCcEEEEecCCCC-------------CccCc---------eEEeccCCccccceEecCCCh
Confidence 3778887 44 677888999999999885331 00000 0111222234 4899998544
Q ss_pred cEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcC-CCcEEEecC
Q 039124 160 DLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHK-NGSIFFTDT 211 (259)
Q Consensus 160 ~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~-dG~IyfTDs 211 (259)
.-+.+-+|.| |.-.|.+++..+.+.+.-+. . ....++++.. ++.+||.|.
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d-~-~~fs~~d~~~e~~~vl~~~~ 299 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTD-N-IWFSSLDFSAESRSVLFGDN 299 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcCcc-c-eeeeeccccCCCccEEEeec
Confidence 4455667888 45558887765555432111 1 1334555543 455777665
No 243
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=45.96 E-value=1.6e+02 Score=27.87 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=42.6
Q ss_pred CCCceeEEEcCCC-CEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCC
Q 039124 79 VFGPESLEFDGLG-RGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKD 157 (259)
Q Consensus 79 l~gPE~ia~D~~G-~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~ 157 (259)
-.|=.++|=++.. ..+.+|..||.|.-|+..... |- +.++..-|--.||+++.
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~---------------~~----------~~f~AH~G~V~Gi~v~~- 119 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE---------------CI----------RTFKAHEGLVRGICVTQ- 119 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEehhhhh---------------hh----------heeecccCceeeEEecc-
Confidence 3455567766644 568899999999999986541 21 11222334456999997
Q ss_pred CCcEEEEeCCC-ceEEEE
Q 039124 158 TGDLYIADAYY-GLLVVG 174 (259)
Q Consensus 158 ~G~L~VaD~~~-Gl~~v~ 174 (259)
+..++|.|-.. -.++++
T Consensus 120 ~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred cceEEecCCcceeeeecc
Confidence 45666665321 244444
No 244
>COG3168 PilP Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=45.20 E-value=1.4e+02 Score=24.91 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=14.5
Q ss_pred EEEEcCCCeEEEEeCCCc
Q 039124 94 PYTGLADGRIVRWMGENV 111 (259)
Q Consensus 94 ~yt~~~~G~I~ri~~~~~ 111 (259)
-|.+..+|+|.||+.+..
T Consensus 127 ~YlGqN~GrV~rI~d~~i 144 (170)
T COG3168 127 QYLGQNYGRVVRITDDSI 144 (170)
T ss_pred cEeeccCceEEEecCCeE
Confidence 378899999999986643
No 245
>smart00284 OLF Olfactomedin-like domains.
Probab=44.97 E-value=2.3e+02 Score=25.35 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=18.1
Q ss_pred eEEEcCCCC-EEEEEcC-CCeEE--EEeCCCc
Q 039124 84 SLEFDGLGR-GPYTGLA-DGRIV--RWMGENV 111 (259)
Q Consensus 84 ~ia~D~~G~-~~yt~~~-~G~I~--ri~~~~~ 111 (259)
++|+|++|- .+|+... .|.|+ |++++.-
T Consensus 132 DlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL 163 (255)
T smart00284 132 DLAVDENGLWVIYATEQNAGKIVISKLNPATL 163 (255)
T ss_pred EEEEcCCceEEEEeccCCCCCEEEEeeCcccc
Confidence 688998875 3355543 47666 7877654
No 246
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=44.67 E-value=1.5e+02 Score=30.71 Aligned_cols=99 Identities=21% Similarity=0.227 Sum_probs=62.4
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCcc-EEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVG-WETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~-~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
.++++|+.-..+.|++.|..|..++-+.+. ...|... ....|.+.-+-.|+ .| +
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs-----------------------~~~eG~lIKv~lDP-Sg-i 654 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS-----------------------RDHEGDLIKVILDP-SG-I 654 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeeccc-----------------------ccCCCceEEEEECC-Cc-c
Confidence 378999988888999999888777765442 2223110 12246677888888 34 6
Q ss_pred EEEeCCC--ceEEEECCCCeEEEeeecC----CCCCcccccc----EEEcCCCcEEE
Q 039124 162 YIADAYY--GLLVVGSKGGLATPLATQA----GGKPILFAND----LDVHKNGSIFF 208 (259)
Q Consensus 162 ~VaD~~~--Gl~~v~~~gg~~~~l~~~~----~g~pl~~~Nd----l~vd~dG~Iyf 208 (259)
|+|-++. -|-.+|--+|+ .++.-. -=..++|.|| +.+..||-||+
T Consensus 655 Y~atScsdktl~~~Df~sgE--cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 655 YLATSCSDKTLCFVDFVSGE--CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFV 709 (1080)
T ss_pred EEEEeecCCceEEEEeccch--hhhhhcCcchheeeeeecccchhheeecCCceEEE
Confidence 7765443 47778877664 222110 0024788998 56788998776
No 247
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=44.22 E-value=89 Score=31.72 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=43.9
Q ss_pred CCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEE---cCCCcEEEecCCCCCCcccceeeeeccCCCceEE
Q 039124 158 TGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDV---HKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLL 234 (259)
Q Consensus 158 ~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~v---d~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~ 234 (259)
++.||||-+++.++.+|.++|+ +.+--+.+- ..++.. .-+|-=|+.+....- ..+...++-...+.||.
T Consensus 214 gdtlYvcTphn~v~ALDa~TGk-ekWkydp~~-----~~nv~~~~~tCrgVsy~~a~a~~k--~pc~~rIflpt~DarlI 285 (773)
T COG4993 214 GDTLYVCTPHNRVFALDAATGK-EKWKYDPNL-----KSNVDPQHQTCRGVSYGAAKADAK--SPCPRRIFLPTADARLI 285 (773)
T ss_pred CCEEEEecCcceeEEeeccCCc-eeeecCCCC-----CCCcccccccccceeccccccccc--CCCceeEEeecCCceEE
Confidence 4789999999999999999985 444322110 111111 123333333221110 11222344456778999
Q ss_pred EEeCCCCcEE
Q 039124 235 RYDPPTKSNS 244 (259)
Q Consensus 235 rydp~tg~~~ 244 (259)
-+|.+||++-
T Consensus 286 ALdA~tGkvc 295 (773)
T COG4993 286 ALDADTGKVC 295 (773)
T ss_pred EEeCCCCcEe
Confidence 9999988753
No 248
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=43.65 E-value=2.3e+02 Score=25.04 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=47.4
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
+|.+-+....+|.-...|+|+.|++.....+.. ..+ . ......|.+.|+.|.+.-.+|-|
T Consensus 31 GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~v-g~s-~------------------~~~al~g~~~gvDFNP~aDRlRv 90 (236)
T PF14339_consen 31 GIDFRPANGQLYGLGSTGRLYTINPATGAATPV-GAS-P------------------LTVALSGTAFGVDFNPAADRLRV 90 (236)
T ss_pred EEEeecCCCCEEEEeCCCcEEEEECCCCeEEEe-ecc-c------------------ccccccCceEEEecCcccCcEEE
Confidence 456666444488777889999999987632221 000 0 01122345788989886678877
Q ss_pred EeCCCceEEEECCCCe
Q 039124 164 ADAYYGLLVVGSKGGL 179 (259)
Q Consensus 164 aD~~~Gl~~v~~~gg~ 179 (259)
.-...--+|+++++|.
T Consensus 91 vs~~GqNlR~npdtGa 106 (236)
T PF14339_consen 91 VSNTGQNLRLNPDTGA 106 (236)
T ss_pred EccCCcEEEECCCCCC
Confidence 6433336788888775
No 249
>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.
Probab=43.48 E-value=97 Score=26.91 Aligned_cols=20 Identities=15% Similarity=0.439 Sum_probs=15.7
Q ss_pred CCcccc-c--cEEEcCCCcEEEe
Q 039124 190 KPILFA-N--DLDVHKNGSIFFT 209 (259)
Q Consensus 190 ~pl~~~-N--dl~vd~dG~IyfT 209 (259)
.|+.+| . ++.|++||.|+..
T Consensus 127 gpI~~~~~~~~~~i~~dG~i~~~ 149 (231)
T TIGR03506 127 GPVTVPPDGASVSIGSDGTVSAT 149 (231)
T ss_pred CCEEECCCCceEEECCCcEEEEE
Confidence 367776 3 6999999999875
No 250
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=43.06 E-value=43 Score=20.31 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=16.7
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCC
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGE 109 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~ 109 (259)
+++++ +..+|++..+|+++.++.+
T Consensus 16 ~~~v~--~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVA--GGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp --EEC--TSEEEEE-TTSEEEEEETT
T ss_pred CCEEE--CCEEEEEcCCCEEEEEeCC
Confidence 45664 4459999999999999874
No 251
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=42.80 E-value=28 Score=20.31 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=12.9
Q ss_pred CceEEEEeCCCCcEE
Q 039124 230 TGRLLRYDPPTKSNS 244 (259)
Q Consensus 230 ~GrL~rydp~tg~~~ 244 (259)
+|+.|.||..||+++
T Consensus 13 ~g~~YY~N~~t~~s~ 27 (31)
T PF00397_consen 13 SGRPYYYNHETGESQ 27 (31)
T ss_dssp TSEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCCEE
Confidence 699999999988764
No 252
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=42.75 E-value=92 Score=28.58 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=35.5
Q ss_pred EEEeCCCCcEEEEeC-----CCceEEEECC-CCeEEEeeecCCCCCcccc-ccEEEcCCCcEEEec
Q 039124 152 LRFNKDTGDLYIADA-----YYGLLVVGSK-GGLATPLATQAGGKPILFA-NDLDVHKNGSIFFTD 210 (259)
Q Consensus 152 l~~d~~~G~L~VaD~-----~~Gl~~v~~~-gg~~~~l~~~~~g~pl~~~-Ndl~vd~dG~IyfTD 210 (259)
+.+|.+++.||.... ..+|++|+.+ ++..+.|.... + . ..+.++++|+.|+-.
T Consensus 286 ~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~-~-----~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 286 LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED-G-----DHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS-S-----TTEEEEE-TTSSEEEEE
T ss_pred ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC-C-----CceEEEECCCCCEEEEE
Confidence 456876567775433 2369999999 88877776432 2 2 589999999866543
No 253
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=42.41 E-value=3.8e+02 Score=27.56 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=65.0
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCc--cEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENV--GWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~--~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
++.|.+.+..+.++.+|..++.|.++.. .|..- +|-| +..+.-+.=.|--+.+ +++.
T Consensus 272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~----------vRlG----------e~gg~a~GF~g~lw~~-n~~~ 330 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV----------VRLG----------EVGGSAGGFWGGLWSP-NSNV 330 (764)
T ss_pred EEEEccchhhheecccCcceEEEecCCccceEEEE----------EEee----------cccccccceeeEEEcC-CCCE
Confidence 5788888866888999999999988765 24431 1111 0001111124556777 5899
Q ss_pred EEEeCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 162 YIADAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 162 ~VaD~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
+||-++.| +++ +.+.+.-... ..+.| -+.-.-|++=+|.|..+.|-+.
T Consensus 331 ii~~g~~Gg~hlWk-t~d~~~w~~~-~~iSG-H~~~V~dv~W~psGeflLsvs~ 381 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWK-TKDKTFWTQE-PVISG-HVDGVKDVDWDPSGEFLLSVSL 381 (764)
T ss_pred EEEecccCcEEEEe-ccCccceeec-ccccc-ccccceeeeecCCCCEEEEecc
Confidence 99999887 444 2332221111 12333 3566789999999999987654
No 254
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=42.31 E-value=2.4e+02 Score=24.73 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=49.9
Q ss_pred CCceeEEEcCCCCEEEEEc---CCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeC
Q 039124 80 FGPESLEFDGLGRGPYTGL---ADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNK 156 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~---~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~ 156 (259)
..++++++.++|..+..-. ...+++....++. .... . ....-..-.+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~------------------------~---~g~~l~~PS~d~ 75 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPV------------------------L---TGGSLTRPSWDP 75 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceee------------------------c---cCCccccccccC
Confidence 3688889988887553333 3344555544433 1110 0 112233447788
Q ss_pred CCCcEEEEeCCCceEEE--ECCCCeEEEeeecCCCCCcc-ccccEEEcCCCc
Q 039124 157 DTGDLYIADAYYGLLVV--GSKGGLATPLATQAGGKPIL-FANDLDVHKNGS 205 (259)
Q Consensus 157 ~~G~L~VaD~~~Gl~~v--~~~gg~~~~l~~~~~g~pl~-~~Ndl~vd~dG~ 205 (259)
+ |.+|+++......++ +...+......-...+ +. ....+.+++||.
T Consensus 76 ~-g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~--~~~~I~~l~vSpDG~ 124 (253)
T PF10647_consen 76 D-GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPG--LRGRITALRVSPDGT 124 (253)
T ss_pred C-CCEEEEEcCCCceEEEEecCCCcceeEEecccc--cCCceEEEEECCCCc
Confidence 5 999998776553332 2233332322212111 11 577889999986
No 255
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=42.11 E-value=1.5e+02 Score=26.37 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=34.1
Q ss_pred CCCcceEEEeC---CCCcEEEEeC-------CCceEEEECCCCeEE----EeeecCCCCCccccc--cEEEcCCCcEEEe
Q 039124 146 CGRPLGLRFNK---DTGDLYIADA-------YYGLLVVGSKGGLAT----PLATQAGGKPILFAN--DLDVHKNGSIFFT 209 (259)
Q Consensus 146 ~grPlGl~~d~---~~G~L~VaD~-------~~Gl~~v~~~gg~~~----~l~~~~~g~pl~~~N--dl~vd~dG~IyfT 209 (259)
-++|+.+++.. .++.+++... ..|=|++|.++-.++ .+. ...|.|+..|. ++.|++||.|+..
T Consensus 83 Tg~~lDlAI~G~~~~g~gFf~v~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl-g~~g~pI~lp~~~~v~I~~dG~I~~~ 161 (257)
T PRK12819 83 TNSDTDFFLDDGPAGTSSFFVTSKNGETFLTRDGSFTLNSDRYLQTASGAFVM-GENNERIRIPEGAKVAVQADGTLYDA 161 (257)
T ss_pred cCCcccEEEecCcCCCCEEEEEcCCCCeeEeeCCCeeECCCCCEEcCCCCEEe-cCCCCceEeCCCCcEEEcCCCEEEEE
Confidence 45677777753 0022333321 235667776643211 111 12344677773 7999999999774
No 256
>PF14220 DUF4329: Domain of unknown function (DUF4329)
Probab=42.00 E-value=6.6 Score=31.17 Aligned_cols=18 Identities=50% Similarity=0.885 Sum_probs=14.8
Q ss_pred cCCCceEEEEeCCCCcEE
Q 039124 227 GESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 227 ~~~~GrL~rydp~tg~~~ 244 (259)
+.|.||||+||+++++++
T Consensus 98 ~TP~Grl~~~~~~~~~~~ 115 (123)
T PF14220_consen 98 GTPGGRLWKYDPSTKTIR 115 (123)
T ss_pred eCCCCcEEEEcCchhHHH
Confidence 578999999999876554
No 257
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=41.81 E-value=3.1e+02 Score=26.03 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=16.9
Q ss_pred cceEEEeCCCCcEEEEeCCCceEEEE
Q 039124 149 PLGLRFNKDTGDLYIADAYYGLLVVG 174 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~Gl~~v~ 174 (259)
-.++.+.. +|.++++-...++++-.
T Consensus 283 l~~v~~~~-dg~l~l~g~~G~l~~S~ 307 (398)
T PLN00033 283 IQNMGWRA-DGGLWLLTRGGGLYVSK 307 (398)
T ss_pred eeeeeEcC-CCCEEEEeCCceEEEec
Confidence 35777877 48999886655555544
No 258
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=40.99 E-value=3.8e+02 Score=27.99 Aligned_cols=103 Identities=18% Similarity=0.295 Sum_probs=60.7
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
.+.++.+.++.+-++..+|+|..|..-+..-..+..+--+ |.. .--+++.|..+ |..+
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH-----------------WH~----~~V~~L~fS~~-G~~L 266 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH-----------------WHH----DEVNSLSFSSD-GAYL 266 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEE-----------------ecc----cccceeEEecC-CceE
Confidence 4678888899888889999999887544100011111001 221 11258899985 5444
Q ss_pred EEeCCCceE-EEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 163 IADAYYGLL-VVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 163 VaD~~~Gl~-~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
..-..-|++ +...+++. +++.....+ | .-++.+.+|++.|-.-..
T Consensus 267 lSGG~E~VLv~Wq~~T~~-kqfLPRLgs-~---I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGK-KQFLPRLGS-P---ILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred eecccceEEEEEeecCCC-cccccccCC-e---eEEEEEcCCCCeEEEEec
Confidence 454555644 44566665 555555543 2 458889999988765443
No 259
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=40.62 E-value=2.8e+02 Score=25.11 Aligned_cols=108 Identities=16% Similarity=0.101 Sum_probs=63.1
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCCccE-EEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGENVGW-ETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~-~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
=.+++++++|..+......|+.+.|+.-+... +.| + |.. ++....+.-+-.++.++ +.
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l--------~----------P~~--k~~ah~~~il~C~lSPd-~k 228 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL--------E----------PVH--KFQAHNGHILRCLLSPD-VK 228 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc--------e----------Ehh--heecccceEEEEEECCC-Cc
Confidence 34788999999777777789988887543311 111 1 011 11222344456678885 66
Q ss_pred EEE-EeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCC
Q 039124 161 LYI-ADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 161 L~V-aD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~ 213 (259)
.++ |.+..-+...+.++-....+. .+|. -+..-|.++..||+..||-++.
T Consensus 229 ~lat~ssdktv~iwn~~~~~kle~~--l~gh-~rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 229 YLATCSSDKTVKIWNTDDFFKLELV--LTGH-QRWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred EEEeecCCceEEEEecCCceeeEEE--eecC-CceEEeeeeccCccEEEecCCC
Confidence 655 334444555555554111121 2222 2578899999999999998774
No 260
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=40.60 E-value=1.9e+02 Score=27.51 Aligned_cols=92 Identities=16% Similarity=0.283 Sum_probs=51.1
Q ss_pred CCCcceEEEeCCCCcEEEEeCCCceEEEECCC---CeEEEeeecCCCCCccccccEEEcCCCcEEEecCC----------
Q 039124 146 CGRPLGLRFNKDTGDLYIADAYYGLLVVGSKG---GLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS---------- 212 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~g---g~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss---------- 212 (259)
.-||..++|..++-...|+|...-.+.++.-. +..+.+.. .+...-|+++.+|+.+.+|--.
T Consensus 107 ~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lG-----hvSml~dVavS~D~~~IitaDRDEkIRvs~yp 181 (390)
T KOG3914|consen 107 PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILG-----HVSMLLDVAVSPDDQFIITADRDEKIRVSRYP 181 (390)
T ss_pred ccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhh-----hhhhhheeeecCCCCEEEEecCCceEEEEecC
Confidence 34688888887656777888765555554211 22232221 2446677777777765544222
Q ss_pred CCCCc-------ccce--------eeeeccCCCceEEEEeCCCCc
Q 039124 213 KRYNR-------VDHF--------FILLEGESTGRLLRYDPPTKS 242 (259)
Q Consensus 213 ~~~~~-------~~~~--------~~~~e~~~~GrL~rydp~tg~ 242 (259)
..|.. ++|+ +.++++.+.+.|+-.|-.+|+
T Consensus 182 a~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 182 ATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred cccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence 11111 2222 225667777777777776653
No 261
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=40.49 E-value=2.7e+02 Score=24.91 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=14.2
Q ss_pred ceEEEEeCCCCcEEEec
Q 039124 231 GRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 231 GrL~rydp~tg~~~vl~ 247 (259)
..+++||+.+++.+.+.
T Consensus 271 ~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 271 RKILIYNVRTGKWKSIG 287 (323)
T ss_pred ceEEEEECCCCeeeEcc
Confidence 46999999999887775
No 262
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=40.44 E-value=2.6e+02 Score=25.10 Aligned_cols=111 Identities=17% Similarity=0.288 Sum_probs=0.0
Q ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc-eEEEeCCCCcEEE
Q 039124 85 LEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL-GLRFNKDTGDLYI 163 (259)
Q Consensus 85 ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl-Gl~~d~~~G~L~V 163 (259)
..+|-.+..+.++..||++.+++...+ -....-.|.|. .+.|.+ +|+...
T Consensus 149 ~Si~v~~heIvaGS~DGtvRtydiR~G----------------------------~l~sDy~g~pit~vs~s~-d~nc~L 199 (307)
T KOG0316|consen 149 SSIDVAEHEIVAGSVDGTVRTYDIRKG----------------------------TLSSDYFGHPITSVSFSK-DGNCSL 199 (307)
T ss_pred eEEEecccEEEeeccCCcEEEEEeecc----------------------------eeehhhcCCcceeEEecC-CCCEEE
Q ss_pred EeCCCceEEE-ECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCc
Q 039124 164 ADAYYGLLVV-GSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKS 242 (259)
Q Consensus 164 aD~~~Gl~~v-~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~ 242 (259)
+-.-.+.+++ |.++| +.|..-...+...+--|..+.......|+-|- .|.+|-+|....+
T Consensus 200 a~~l~stlrLlDk~tG--klL~sYkGhkn~eykldc~l~qsdthV~sgSE-----------------DG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 200 ASSLDSTLRLLDKETG--KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSE-----------------DGKVYFWDLVDET 260 (307)
T ss_pred Eeeccceeeecccchh--HHHHHhcccccceeeeeeeecccceeEEeccC-----------------CceEEEEEeccce
Q ss_pred E
Q 039124 243 N 243 (259)
Q Consensus 243 ~ 243 (259)
.
T Consensus 261 ~ 261 (307)
T KOG0316|consen 261 Q 261 (307)
T ss_pred e
No 263
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=39.82 E-value=1.5e+02 Score=26.34 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=33.1
Q ss_pred CCCcceEEEeCCCCcEEEEeC-------CCceEEEECCCCeEEEeeecCCCC----Ccccc---ccEEEcCCCcEEEe
Q 039124 146 CGRPLGLRFNKDTGDLYIADA-------YYGLLVVGSKGGLATPLATQAGGK----PILFA---NDLDVHKNGSIFFT 209 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~-------~~Gl~~v~~~gg~~~~l~~~~~g~----pl~~~---Ndl~vd~dG~IyfT 209 (259)
-|+|+-+++..+ |-+.|-+. ..|=|++|.+|- |++ .+|. |+..| .++.|++||.|+..
T Consensus 89 Tg~~lD~AI~G~-GFF~V~~~~G~~~yTR~G~F~~d~~G~----Lvt-~~G~~Vl~~I~lp~~~~~i~I~~dG~I~~~ 160 (262)
T PRK12692 89 TGNQLDLAVNGR-GYFQVTSPNGEIQYTRAGSFNKNAAGQ----LVT-MEGYAVDPAILIPQNTTQVTINESGQVFAK 160 (262)
T ss_pred CCCcceEEEcCC-ceEEEECCCCCeEEEeCCCceECCCCC----EEc-CCCCCcccccccCCCCcceEECCCCEEEEe
Confidence 467888888763 54444321 124566665543 222 1232 24455 37999999999764
No 264
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=39.75 E-value=3e+02 Score=25.20 Aligned_cols=116 Identities=9% Similarity=0.049 Sum_probs=71.6
Q ss_pred cCCCeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCC
Q 039124 68 LVTGKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCG 147 (259)
Q Consensus 68 L~~~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 147 (259)
--.+.+.+.|.-..=++++..++|+..+++..|+.+..|+..++. .+.. .|. ..-
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~-~t~~---------f~G---------------H~~ 106 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE-STRR---------FVG---------------HTK 106 (315)
T ss_pred cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc-EEEE---------EEe---------------cCC
Confidence 344566777766666788888999988999999999999987652 1100 221 112
Q ss_pred CcceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCC-cEEEecCC
Q 039124 148 RPLGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNG-SIFFTDTS 212 (259)
Q Consensus 148 rPlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG-~IyfTDss 212 (259)
.-++++|.++ .+-+|.-+... |...+..|+..-.+... +. -...+-+.+.|+- +.|+-..+
T Consensus 107 dVlsva~s~d-n~qivSGSrDkTiklwnt~g~ck~t~~~~--~~-~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 107 DVLSVAFSTD-NRQIVSGSRDKTIKLWNTLGVCKYTIHED--SH-REWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred ceEEEEecCC-CceeecCCCcceeeeeeecccEEEEEecC--CC-cCcEEEEEEcCCCCCcEEEEcc
Confidence 3479999995 66667654433 55556665543333322 11 3467778888875 44443333
No 265
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=39.75 E-value=23 Score=34.31 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=23.3
Q ss_pred CCCCccccccEEEcCCCcEEEecCCCC
Q 039124 188 GGKPILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 188 ~g~pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
.+..|..|.+|.+|+||..|.||-.+.
T Consensus 462 g~~~fylphgl~~dkdgf~~~tdvash 488 (501)
T KOG3567|consen 462 GKNLFYLPHGLSIDKDGFYWVTDVASH 488 (501)
T ss_pred cCCceecCCcceecCCCcEEeecccch
Confidence 344689999999999999999998764
No 266
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=39.74 E-value=68 Score=29.65 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=27.1
Q ss_pred ceEEEECCC-CeEE-EeeecCCCCCccccccEEEcCCCc---EEEecCCCCCCcccceeeeeccCCCceEEEEeCC
Q 039124 169 GLLVVGSKG-GLAT-PLATQAGGKPILFANDLDVHKNGS---IFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPP 239 (259)
Q Consensus 169 Gl~~v~~~g-g~~~-~l~~~~~g~pl~~~Ndl~vd~dG~---IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~ 239 (259)
.|+.+|.++ |..- .+........+..|.-++.+.||. +|+.|. .|.|||+|..
T Consensus 182 ~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl------------------~GnlwR~dl~ 239 (335)
T PF05567_consen 182 ALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDL------------------GGNLWRFDLS 239 (335)
T ss_dssp EEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEET------------------TSEEEEEE--
T ss_pred EEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcC------------------CCcEEEEECC
Confidence 388889887 6522 221111111234455555666764 777764 3789999875
No 267
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=39.19 E-value=65 Score=28.80 Aligned_cols=58 Identities=22% Similarity=0.410 Sum_probs=32.9
Q ss_pred CCCcceEEEeCCCCcEEEEeC-------CCceEEEECCCCeEEEeeecCCCC----Ccccc-----ccEEEcCCCcEEEe
Q 039124 146 CGRPLGLRFNKDTGDLYIADA-------YYGLLVVGSKGGLATPLATQAGGK----PILFA-----NDLDVHKNGSIFFT 209 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~-------~~Gl~~v~~~gg~~~~l~~~~~g~----pl~~~-----Ndl~vd~dG~IyfT 209 (259)
-++|+-+++..+ |-+-|.+. ..|=|++|.++- |++ .+|. |+..| .++.|++||.|+..
T Consensus 89 Tg~~lDlAI~G~-GFF~V~~~~G~~~YTR~G~F~~d~~G~----Lvt-~~G~~vl~~I~lp~~~~~~~i~I~~dG~I~~~ 162 (264)
T PRK12816 89 TGNKLDVAIEGE-GFFKILMPDGTYAYTRDGSFKIDANGQ----LVT-SNGYRLLPEIIFPENYILNSITISEEGIVSVK 162 (264)
T ss_pred CCCcceEEECCC-cEEEEEcCCCCeEEeeCCCeeECCCCC----EEC-CCCCEecceeecCCCcccccEEECCCCeEEEe
Confidence 466777777653 54444321 124566665543 222 1222 34455 47999999999874
No 268
>PRK13684 Ycf48-like protein; Provisional
Probab=38.46 E-value=3.1e+02 Score=25.05 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=13.4
Q ss_pred CCcceEEEeCCCCcEEEEeCCCceEEE
Q 039124 147 GRPLGLRFNKDTGDLYIADAYYGLLVV 173 (259)
Q Consensus 147 grPlGl~~d~~~G~L~VaD~~~Gl~~v 173 (259)
+.-.++++++ +|.+ ++-...|.+..
T Consensus 173 g~~~~i~~~~-~g~~-v~~g~~G~i~~ 197 (334)
T PRK13684 173 GVVRNLRRSP-DGKY-VAVSSRGNFYS 197 (334)
T ss_pred ceEEEEEECC-CCeE-EEEeCCceEEE
Confidence 3445777777 3554 44444564443
No 269
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=38.29 E-value=3.1e+02 Score=25.01 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=58.0
Q ss_pred cCCCCCce----eEEEcCCCCEEEEEcCCCeEEEEeCCCc-cEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 76 VDEVFGPE----SLEFDGLGRGPYTGLADGRIVRWMGENV-GWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 76 ~~~l~gPE----~ia~D~~G~~~yt~~~~G~I~ri~~~~~-~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
...++|+| |++|.++|+.+-|...|..|+.|..+.. .++-.++ .+.....-.
T Consensus 98 v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV-----------------------L~~HtqDVK 154 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV-----------------------LQEHTQDVK 154 (312)
T ss_pred EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee-----------------------ecccccccc
Confidence 33467777 7999999997777778888877765432 1222111 111222346
Q ss_pred eEEEeCCCCcEEEEeCCCceEEE-ECC-CCeEEEeeecCCCCCccccccEEEcCCC
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVV-GSK-GGLATPLATQAGGKPILFANDLDVHKNG 204 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v-~~~-gg~~~~l~~~~~g~pl~~~Ndl~vd~dG 204 (259)
++.+++ +-+|++.-+|..-+++ ... .+.-+. +..++|.. +..-.+++++.|
T Consensus 155 ~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c-~~tl~g~~-~TVW~~~F~~~G 207 (312)
T KOG0645|consen 155 HVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWEC-VQTLDGHE-NTVWSLAFDNIG 207 (312)
T ss_pred EEEEcC-CcceeEEeccCCeEEEEeecCCCCeeE-EEEecCcc-ceEEEEEecCCC
Confidence 888998 5788887777653333 222 343332 22344431 134455555555
No 270
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=37.49 E-value=78 Score=28.08 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=34.2
Q ss_pred CCCcceEEEeCCCCcEEEEeC-------CCceEEEECCCCeEEEeeecCCCC----Ccccc---ccEEEcCCCcEEEe
Q 039124 146 CGRPLGLRFNKDTGDLYIADA-------YYGLLVVGSKGGLATPLATQAGGK----PILFA---NDLDVHKNGSIFFT 209 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~-------~~Gl~~v~~~gg~~~~l~~~~~g~----pl~~~---Ndl~vd~dG~IyfT 209 (259)
-++|+-+++..+ |-+-|.+. ..|-|++|.+|- |++ .+|. |+..| .++.|++||.|+..
T Consensus 87 Tg~~lD~AI~G~-GfF~V~~~~g~~~yTR~G~F~~d~~G~----Lvt-~~G~~Vl~~I~lp~~~~~~~I~~dG~i~~~ 158 (259)
T TIGR02488 87 TGNDLDLAIEGE-GFFQVLMPDGTTAYTRDGAFKINAEGQ----LVT-SNGYPLQPEITIPENATSITVGSDGEVSVR 158 (259)
T ss_pred cCCcceEEEcCC-cEEEEEcCCCCeEEeeCCceEECCCCC----EEC-CCCCEecCceecCCCCceEEECCCCeEEEe
Confidence 467888888763 54444321 125667776653 222 1222 35455 26999999999874
No 271
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.46 E-value=3.9e+02 Score=25.80 Aligned_cols=89 Identities=16% Similarity=0.051 Sum_probs=47.6
Q ss_pred CCCcceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCC-CccccccEEEcCCCcEEEecCCCCCCcccceeee
Q 039124 146 CGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGK-PILFANDLDVHKNGSIFFTDTSKRYNRVDHFFIL 224 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~-pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~ 224 (259)
.|+-..+....+.-.|..+-...-+-.+|..+.++....+ ++|- --.-.+-+.+.|+|....+
T Consensus 341 gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s-A~g~k~asDwtrvvfSpd~~YvaA--------------- 404 (459)
T KOG0288|consen 341 GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS-AEGFKCASDWTRVVFSPDGSYVAA--------------- 404 (459)
T ss_pred CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee-ccccccccccceeEECCCCceeee---------------
Confidence 4444445444421255555333335555766665555443 2221 1111344555665543332
Q ss_pred eccCCCceEEEEeCCCCcEEEecCCCCC
Q 039124 225 LEGESTGRLLRYDPPTKSNSYCVRWLGF 252 (259)
Q Consensus 225 ~e~~~~GrL~rydp~tg~~~vl~~~L~~ 252 (259)
+...|+||..+-.|++.+..+..-.-
T Consensus 405 --GS~dgsv~iW~v~tgKlE~~l~~s~s 430 (459)
T KOG0288|consen 405 --GSADGSVYIWSVFTGKLEKVLSLSTS 430 (459)
T ss_pred --ccCCCcEEEEEccCceEEEEeccCCC
Confidence 45578999999999998887755443
No 272
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=37.29 E-value=3.1e+02 Score=25.04 Aligned_cols=82 Identities=11% Similarity=0.198 Sum_probs=42.6
Q ss_pred eEEEeCCCCc-EEEE--eCCCc---eEEEECCCCeEEEeeecCCCCCccccccEEEc-CCCc--EEEecCCCCCCcccce
Q 039124 151 GLRFNKDTGD-LYIA--DAYYG---LLVVGSKGGLATPLATQAGGKPILFANDLDVH-KNGS--IFFTDTSKRYNRVDHF 221 (259)
Q Consensus 151 Gl~~d~~~G~-L~Va--D~~~G---l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd-~dG~--IyfTDss~~~~~~~~~ 221 (259)
-+.+.++ ++ |++. +-... ++.+|.+++..+.+..+....=+...+...+- ++|. +|+++ .
T Consensus 188 ~v~W~~d-~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~--------- 256 (353)
T PF00930_consen 188 RVGWSPD-GKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-R--------- 256 (353)
T ss_dssp EEEEEET-TEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-T---------
T ss_pred cceecCC-CcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-c---------
Confidence 3455553 55 6653 33222 67778888777776655444334444455543 4443 44444 2
Q ss_pred eeeeccCCCceEEEEeCCCCcEEEecCC
Q 039124 222 FILLEGESTGRLLRYDPPTKSNSYCVRW 249 (259)
Q Consensus 222 ~~~~e~~~~GrL~rydp~tg~~~vl~~~ 249 (259)
.+-..||.|+.++++.+.|-.|
T Consensus 257 ------~G~~hly~~~~~~~~~~~lT~G 278 (353)
T PF00930_consen 257 ------DGYRHLYLYDLDGGKPRQLTSG 278 (353)
T ss_dssp ------TSSEEEEEEETTSSEEEESS-S
T ss_pred ------CCCcEEEEEcccccceeccccC
Confidence 2234566677665554444433
No 273
>PHA02790 Kelch-like protein; Provisional
Probab=36.46 E-value=4e+02 Score=25.68 Aligned_cols=49 Identities=4% Similarity=-0.095 Sum_probs=27.1
Q ss_pred CCcEEEEeCCC----ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEec
Q 039124 158 TGDLYIADAYY----GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 158 ~G~L~VaD~~~----Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
+|.|||.-... .+..+||++..-+.+.. .+.......++.-+|.||+.-
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~----m~~~r~~~~~~~~~~~IYv~G 414 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS----TYYPHYKSCALVFGRRLFLVG 414 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCC----CCCccccceEEEECCEEEEEC
Confidence 47999974322 25677888775443321 122222334445577888853
No 274
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=35.40 E-value=2.5e+02 Score=26.01 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=49.7
Q ss_pred eEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 84 SLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 84 ~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
+++|.+ ...++-++.-||.|..|+.+..+. +. ++ ......|-+|.+++..++..++
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--~~-------------~k--------a~~~~~~PvL~v~WsddgskVf 88 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--LV-------------PK--------AQQSHDGPVLDVCWSDDGSKVF 88 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCc--cc-------------ch--------hhhccCCCeEEEEEccCCceEE
Confidence 466766 556566888899887776543210 00 00 1122345568999998533556
Q ss_pred EEeCCCceEEEECCCCeEEEeee
Q 039124 163 IADAYYGLLVVGSKGGLATPLAT 185 (259)
Q Consensus 163 VaD~~~Gl~~v~~~gg~~~~l~~ 185 (259)
.+++.+-+-.+|..+++...++.
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~~~v~~ 111 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQVSQVAA 111 (347)
T ss_pred eeccCCceEEEEccCCCeeeeee
Confidence 67777778888999998777764
No 275
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=35.20 E-value=1.3e+02 Score=28.91 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=53.0
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL 150 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl 150 (259)
-|+.+.|.---+.++.|.+...+++++..|.-|.-|++..+. .+|. .. ..-..-+
T Consensus 214 ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~-------------cl~t----------lh--~HKntVl 268 (464)
T KOG0284|consen 214 EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-------------CLAT----------LH--GHKNTVL 268 (464)
T ss_pred hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc-------------hhhh----------hh--hccceEE
Confidence 355556766778899999988889999999988888887651 0232 11 1122357
Q ss_pred eEEEeCCCCcEEEEeCCCceEEE-ECC
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVV-GSK 176 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v-~~~ 176 (259)
+++|.+ +|+.+.+-+.....+| |..
T Consensus 269 ~~~f~~-n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 269 AVKFNP-NGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred EEEEcC-CCCeeEEccCCceEEEEehh
Confidence 899998 5887766555554444 543
No 276
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=34.82 E-value=2.6e+02 Score=26.82 Aligned_cols=91 Identities=12% Similarity=0.064 Sum_probs=47.5
Q ss_pred cceEEEeCCCCcEEEEeCCCc---eEEEE------CCC-----CeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC
Q 039124 149 PLGLRFNKDTGDLYIADAYYG---LLVVG------SKG-----GLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~G---l~~v~------~~g-----g~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
-++++|++ +|+|+.+-...| |++.. .++ .+...+.....| -..-+-|++=.+|++..++-+.
T Consensus 68 VN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~-- 143 (434)
T KOG1009|consen 68 VNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSV-- 143 (434)
T ss_pred eEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeeec--
Confidence 47999999 599987655555 34443 112 111111111111 1123445555666654444332
Q ss_pred CCcccceeeeeccCCCceEEEEeCCCCcEEEec-CCCCCcceeEE
Q 039124 215 YNRVDHFFILLEGESTGRLLRYDPPTKSNSYCV-RWLGFSKWSTI 258 (259)
Q Consensus 215 ~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl~-~~L~~pNGval 258 (259)
..+ ++-+|-.+|++...+ +.=.+.+|+||
T Consensus 144 -------------dns--~~l~Dv~~G~l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 144 -------------DNS--VRLWDVHAGQLLAILDDHEHYVQGVAW 173 (434)
T ss_pred -------------cce--EEEEEeccceeEeeccccccccceeec
Confidence 233 444566667766544 55678999886
No 277
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=34.57 E-value=1e+02 Score=27.15 Aligned_cols=61 Identities=26% Similarity=0.491 Sum_probs=32.8
Q ss_pred CCCcceEEEeCCCCcEEEEeC------CCceEEEECCCCeEE----EeeecCCCCCccccc---cEEEcCCCcEEE
Q 039124 146 CGRPLGLRFNKDTGDLYIADA------YYGLLVVGSKGGLAT----PLATQAGGKPILFAN---DLDVHKNGSIFF 208 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~------~~Gl~~v~~~gg~~~----~l~~~~~g~pl~~~N---dl~vd~dG~Iyf 208 (259)
-|+|+-+++..+ |-+-|-+. ..|-|++|.++-.+. .+. ..+|.|+..|. ++.+++||.|+.
T Consensus 73 Tg~~lDlAI~G~-GFF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G~~vl-~~~g~~I~ip~~~~~~~i~~dG~i~~ 146 (241)
T PRK12642 73 TGNPLDFAVKGD-AWFSFDTPAGQVYTRDGRFTMTSTGELVSVTGYPVL-DAGGAPIQLNPGGGEPTIGADGAIYQ 146 (241)
T ss_pred CCCcceEEECCC-cEEEEEcCCCCEEEeCCCeeECCCCCEECCCCCEec-CCCCCceEeCCCCCCceEcCCceEEE
Confidence 456777777652 43333221 124566665543211 111 12344677762 689999999964
No 278
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=34.56 E-value=1.6e+02 Score=26.87 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=30.3
Q ss_pred cceEEEeCCCCcEEEEeCCCceEEEE--CCCCeEEEeeecCCC
Q 039124 149 PLGLRFNKDTGDLYIADAYYGLLVVG--SKGGLATPLATQAGG 189 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~Gl~~v~--~~gg~~~~l~~~~~g 189 (259)
--|+..|...|.|||+.-.-+|+++. |.+|....+++.+.+
T Consensus 207 TEG~VaDdEtG~LYIaeEdvaiWK~~Aep~~G~~g~~idr~~d 249 (364)
T COG4247 207 TEGMVADDETGFLYIAEEDVAIWKYEAEPNRGNTGRLIDRIKD 249 (364)
T ss_pred ccceeeccccceEEEeeccceeeecccCCCCCCccchhhhhcC
Confidence 35888887789999999888999995 555655556555444
No 279
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=34.12 E-value=37 Score=26.03 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.4
Q ss_pred CCCceEEEEeCCCCcEEEecCCCC
Q 039124 228 ESTGRLLRYDPPTKSNSYCVRWLG 251 (259)
Q Consensus 228 ~~~GrL~rydp~tg~~~vl~~~L~ 251 (259)
...|+||.||+.+.++-.|+++|.
T Consensus 88 ~~~G~Vy~yd~~~~~l~~lA~~l~ 111 (125)
T PF02393_consen 88 GESGRVYAYDPEDDRLYRLADSLE 111 (125)
T ss_pred eCCCeEEEEEcCCCEEEEEeCCHH
Confidence 356899999998888888888763
No 280
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=33.75 E-value=4.3e+02 Score=25.20 Aligned_cols=102 Identities=17% Similarity=0.058 Sum_probs=56.7
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
==.|+++||-+.++-|+..|+.|..|+...+... ...++ .-..--|+++.+..--
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk-ltltG------------------------hi~~vr~vavS~rHpY 207 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK-LTLTG------------------------HIETVRGVAVSKRHPY 207 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEcccCeEE-Eeecc------------------------hhheeeeeeecccCce
Confidence 3458999998776778889999999998765322 11111 0111247888764222
Q ss_pred EEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 161 LYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
|+-| ...+ +--.|.+..+ ++...-| -+...-.|++.|.-++.+|-++
T Consensus 208 lFs~-gedk~VKCwDLe~nk---vIR~YhG-HlS~V~~L~lhPTldvl~t~gr 255 (460)
T KOG0285|consen 208 LFSA-GEDKQVKCWDLEYNK---VIRHYHG-HLSGVYCLDLHPTLDVLVTGGR 255 (460)
T ss_pred EEEe-cCCCeeEEEechhhh---hHHHhcc-ccceeEEEeccccceeEEecCC
Confidence 3222 2223 3334654332 2233333 2445666777777777777554
No 281
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=33.64 E-value=1.9e+02 Score=27.78 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=50.6
Q ss_pred cCCCeEEccCCCCCce-eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcC
Q 039124 68 LVTGKLEFVDEVFGPE-SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWC 146 (259)
Q Consensus 68 L~~~e~l~~~~l~gPE-~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 146 (259)
.++-.....++..-|- .+.|-++|+.+.|+...|+.--|++-.- .| | .| -++|-
T Consensus 84 ~tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---nF--------E-ti------------lQaHD- 138 (464)
T KOG0284|consen 84 TTKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---NF--------E-TI------------LQAHD- 138 (464)
T ss_pred ccceEeccccccccceeeEEEcCCCceeEeecccccEEEecCcee---eH--------H-HH------------hhhhc-
Confidence 3445555566776664 5679999999999999999999986321 11 1 12 11221
Q ss_pred CCc-ceEEEeCCCCcEEEEeCCCceEEE
Q 039124 147 GRP-LGLRFNKDTGDLYIADAYYGLLVV 173 (259)
Q Consensus 147 grP-lGl~~d~~~G~L~VaD~~~Gl~~v 173 (259)
.| .++.+.. +|.-.|+-...|.+|+
T Consensus 139 -s~Vr~m~ws~-~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 139 -SPVRTMKWSH-NGTWMISGDKGGMIKY 164 (464)
T ss_pred -ccceeEEEcc-CCCEEEEcCCCceEEe
Confidence 23 3788888 5777776555566666
No 282
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=33.05 E-value=3.7e+02 Score=24.31 Aligned_cols=34 Identities=9% Similarity=0.044 Sum_probs=26.1
Q ss_pred ceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEe
Q 039124 150 LGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPL 183 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l 183 (259)
+.+-+|++.+.++.|-...-++.+|.++|.++..
T Consensus 118 Nam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred ceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence 6888997678888776555599999999876544
No 283
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=32.71 E-value=2.2e+02 Score=26.25 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=43.3
Q ss_pred ceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCC
Q 039124 150 LGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGES 229 (259)
Q Consensus 150 lGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~ 229 (259)
-.++|++..++|+|+-...-|...+..+.+...... -+.| .-+.++.++-.+|+++.
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~p---lL~c~F~d~~~~~~G~~------------------ 73 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAP---LLDCAFADESTIVTGGL------------------ 73 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCc---eeeeeccCCceEEEecc------------------
Confidence 357888766788887554434444433322222221 1223 34666666666777654
Q ss_pred CceEEEEeCCCCcEEEec
Q 039124 230 TGRLLRYDPPTKSNSYCV 247 (259)
Q Consensus 230 ~GrL~rydp~tg~~~vl~ 247 (259)
.|.|-+||..|++..++.
T Consensus 74 dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred CceEEEEEecCCcceeec
Confidence 357888888777766664
No 284
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.34 E-value=1.5e+02 Score=30.57 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=42.4
Q ss_pred eeEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcE
Q 039124 83 ESLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDL 161 (259)
Q Consensus 83 E~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L 161 (259)
-||+|.| +.+.+.+|..||+|.-|+-.+..... |++ |. .--..++|.++ |..
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-------W~D--l~-----------------~lITAvcy~Pd-Gk~ 465 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-------WND--LR-----------------DLITAVCYSPD-GKG 465 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeEe-------ehh--hh-----------------hhheeEEeccC-Cce
Confidence 4789999 66766789999999988876552221 111 11 11246778884 888
Q ss_pred EEEeCCCceEEE
Q 039124 162 YIADAYYGLLVV 173 (259)
Q Consensus 162 ~VaD~~~Gl~~v 173 (259)
.|.-.++|..++
T Consensus 466 avIGt~~G~C~f 477 (712)
T KOG0283|consen 466 AVIGTFNGYCRF 477 (712)
T ss_pred EEEEEeccEEEE
Confidence 788788885554
No 285
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=31.95 E-value=1.7e+02 Score=25.94 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=11.3
Q ss_pred cEEEcCCCcEEEe
Q 039124 197 DLDVHKNGSIFFT 209 (259)
Q Consensus 197 dl~vd~dG~IyfT 209 (259)
++.|++||.|+..
T Consensus 148 ~~~i~~dG~i~~~ 160 (262)
T PRK12691 148 SITINASGQVSAT 160 (262)
T ss_pred eEEECCCCEEEEE
Confidence 7999999999764
No 286
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=31.66 E-value=1.4e+02 Score=19.21 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=23.0
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGEN 110 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~ 110 (259)
+.++|.|..+++-++..+|+|+-+..++
T Consensus 15 ~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 15 SCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred EEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 3788999999999999999987665543
No 287
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=31.52 E-value=4e+02 Score=25.98 Aligned_cols=109 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
++.|..+|..++|+..||.|..|..-.- +........++.|. |..-...=.=+=+.+..-+.+||-
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~l----v~a~~~~~~~p~~~----------f~~HtlsITDl~ig~Gg~~~rl~T 193 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTDL----VSADNDHSVKPLHI----------FSDHTLSITDLQIGSGGTNARLYT 193 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEee----cccccCCCccceee----------eccCcceeEEEEecCCCccceEEE
Q ss_pred EeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc-EEEecC
Q 039124 164 ADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS-IFFTDT 211 (259)
Q Consensus 164 aD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~-IyfTDs 211 (259)
+-...-+...|..+| ..|.+-.-..+ ++.+++||-++ +|+...
T Consensus 194 aS~D~t~k~wdlS~g--~LLlti~fp~s---i~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 194 ASEDRTIKLWDLSLG--VLLLTITFPSS---IKAVALDPAERVVYIGTE 237 (476)
T ss_pred ecCCceEEEEEeccc--eeeEEEecCCc---ceeEEEcccccEEEecCC
No 288
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=30.81 E-value=63 Score=30.42 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=24.9
Q ss_pred ceeEEEcCCCCEEEEEcCCCeEEEEeCCC
Q 039124 82 PESLEFDGLGRGPYTGLADGRIVRWMGEN 110 (259)
Q Consensus 82 PE~ia~D~~G~~~yt~~~~G~I~ri~~~~ 110 (259)
=+.|.+|..|..++||..+|||+-+..+.
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~ 56 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREK 56 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeeccc
Confidence 35788999999999999999999886544
No 289
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=30.79 E-value=5e+02 Score=25.14 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=31.8
Q ss_pred eEEEECCCCeEEEeeecCCCCC-ccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEE
Q 039124 170 LLVVGSKGGLATPLATQAGGKP-ILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNS 244 (259)
Q Consensus 170 l~~v~~~gg~~~~l~~~~~g~p-l~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~ 244 (259)
+..+|..++..+.+ ..++... -.+.|.. +..+|.+|+.-.... ...-.+|+|||.|++.+
T Consensus 369 laI~d~~~kt~t~V-~glP~~~is~~~~~~-~ve~G~aYi~Vtt~~-------------g~~~~IY~iDp~TatAt 429 (435)
T PF14298_consen 369 LAIFDVSNKTFTWV-TGLPADLISGFGNAP-YVENGKAYIPVTTED-------------GSDPYIYKIDPATATAT 429 (435)
T ss_pred EEEEEccCceeEEe-ccCChhhccccccce-EeeCCEEEEEEeecC-------------CCceeEEEEcCcccccc
Confidence 55556666654433 2222110 1223333 345788888764321 11237999999987654
No 290
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=29.85 E-value=3.4e+02 Score=27.12 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=61.2
Q ss_pred CceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCc
Q 039124 81 GPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGD 160 (259)
Q Consensus 81 gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~ 160 (259)
.+..++|.++|+.+-|-.+||-+..++-+.... +|. +..-+|.-|.+++.+| |.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL-------------lg~------------mkSYFGGLLCvcWSPD-GK 345 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL-------------LGV------------MKSYFGGLLCVCWSPD-GK 345 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHH-------------HHH------------HHhhccceEEEEEcCC-cc
Confidence 788899999999777778898877777655410 221 1233566789999995 99
Q ss_pred EEEEeCCCceEEE-ECCCCeEEEeeecCCCCCccccccEEEcC
Q 039124 161 LYIADAYYGLLVV-GSKGGLATPLATQAGGKPILFANDLDVHK 202 (259)
Q Consensus 161 L~VaD~~~Gl~~v-~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~ 202 (259)
.+|.-....|+.| ...- .++++ .-.|.. ...+++++|+
T Consensus 346 yIvtGGEDDLVtVwSf~e--rRVVA-RGqGHk-SWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEE--RRVVA-RGQGHK-SWVSVVAFDP 384 (636)
T ss_pred EEEecCCcceEEEEEecc--ceEEE-eccccc-cceeeEeecc
Confidence 8877665566666 3222 24444 344432 4889999996
No 291
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=29.48 E-value=6.4e+02 Score=25.90 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=32.9
Q ss_pred ccCCCeEEccCCCCCceeEEEc-------CCCCEEEEEcCCCeEEEEeCCCc
Q 039124 67 RLVTGKLEFVDEVFGPESLEFD-------GLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 67 ~L~~~e~l~~~~l~gPE~ia~D-------~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.|+.|=....|.+..||++--- .-|+.+|+.+.-.+++-+|.+.+
T Consensus 183 nL~~AWty~TGD~k~~~d~~e~t~e~tPLkvgdtlYvcTphn~v~ALDa~TG 234 (773)
T COG4993 183 NLQVAWTYRTGDVKQPEDPGETTNEVTPLKVGDTLYVCTPHNRVFALDAATG 234 (773)
T ss_pred ccceeEEEecCcccCCCCcccccccccceEECCEEEEecCcceeEEeeccCC
Confidence 5888999999999999982110 12667887777778888887664
No 292
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.15 E-value=6.7e+02 Score=26.01 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=0.0
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc-eEEEeCCCCcEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL-GLRFNKDTGDLY 162 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl-Gl~~d~~~G~L~ 162 (259)
++++++++..+|+...+.-+..|+.+.+ .|. +.|+.-|.. |. .++|++ +|.|.
T Consensus 67 a~~l~~d~~~L~~a~rs~llrv~~L~tg---------------k~i--------rswKa~He~--Pvi~ma~~~-~g~Ll 120 (775)
T KOG0319|consen 67 ALALTPDEEVLVTASRSQLLRVWSLPTG---------------KLI--------RSWKAIHEA--PVITMAFDP-TGTLL 120 (775)
T ss_pred eeeecCCccEEEEeeccceEEEEEcccc---------------hHh--------HhHhhccCC--CeEEEEEcC-CCceE
Q ss_pred EEeCCCceEEE-ECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCC
Q 039124 163 IADAYYGLLVV-GSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTK 241 (259)
Q Consensus 163 VaD~~~Gl~~v-~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg 241 (259)
..-...|.++| |.+++..+.-.....| -...+++.++=+-|.==++ .+.|++.-||-.++
T Consensus 121 AtggaD~~v~VWdi~~~~~th~fkG~gG----vVssl~F~~~~~~~lL~sg---------------~~D~~v~vwnl~~~ 181 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTHSFKGHGG----VVSSLLFHPHWNRWLLASG---------------ATDGTVRVWNLNDK 181 (775)
T ss_pred EeccccceEEEEEeeCCEEEEEecCCCc----eEEEEEeCCccchhheeec---------------CCCceEEEEEcccC
Q ss_pred cE
Q 039124 242 SN 243 (259)
Q Consensus 242 ~~ 243 (259)
.+
T Consensus 182 ~t 183 (775)
T KOG0319|consen 182 RT 183 (775)
T ss_pred ch
No 293
>cd00819 PEPCK_GTP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the GTP-dependent group.
Probab=29.10 E-value=49 Score=32.99 Aligned_cols=60 Identities=15% Similarity=0.313 Sum_probs=38.3
Q ss_pred eEEEeCCCCcEEEEeCCCceEEEECCCCeEEEe-e-ecCCCCCccccccEEEcCCCcEEEecCCC
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVVGSKGGLATPL-A-TQAGGKPILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l-~-~~~~g~pl~~~Ndl~vd~dG~IyfTDss~ 213 (259)
=|++++ +|.||..+...|.|-|-+.+...+.- + ..+.. .. ....+++++||.+|+-....
T Consensus 278 wm~~~~-dG~l~AINPE~GfFGVapGtn~~tnP~am~~l~~-n~-IFTNVa~t~DG~vwWeG~~~ 339 (579)
T cd00819 278 WMKFGE-DGRLYAINPEAGFFGVAPGTNAKTNPNAMATLHK-NT-IFTNVALTEDGDVWWEGLTE 339 (579)
T ss_pred eeEECC-CCcEEEEcCCCCeeEeCCCCCCCcCHHHHHHhcC-Cc-eEEEEeEcCCCCeeCCCCCC
Confidence 456776 48898888888888887766532211 1 11221 22 34457888999999977654
No 294
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=28.93 E-value=6.5e+02 Score=25.81 Aligned_cols=137 Identities=17% Similarity=0.174 Sum_probs=67.7
Q ss_pred eeEEE-cCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC-cceEEEeCCCCc
Q 039124 83 ESLEF-DGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR-PLGLRFNKDTGD 160 (259)
Q Consensus 83 E~ia~-D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr-PlGl~~d~~~G~ 160 (259)
.++|. -.+..++.++--|++|.-|+-+... .+......+ -..|. . ...+-. -..++... +|.
T Consensus 121 kcla~~ak~~~lvaSgGLD~~IflWDin~~~-~~l~~s~n~--~t~~s----------l--~sG~k~siYSLA~N~-t~t 184 (735)
T KOG0308|consen 121 KCLAYIAKNNELVASGGLDRKIFLWDINTGT-ATLVASFNN--VTVNS----------L--GSGPKDSIYSLAMNQ-TGT 184 (735)
T ss_pred eeeeecccCceeEEecCCCccEEEEEccCcc-hhhhhhccc--ccccc----------C--CCCCccceeeeecCC-cce
Confidence 35666 3455666677789999999876441 100000001 00121 0 000111 13677776 687
Q ss_pred EEEEeCCCc-eEEEECCCCeEE-EeeecCCCCCccccccEEEcCCCcEEEecCCCC----CCcc----------------
Q 039124 161 LYIADAYYG-LLVVGSKGGLAT-PLATQAGGKPILFANDLDVHKNGSIFFTDTSKR----YNRV---------------- 218 (259)
Q Consensus 161 L~VaD~~~G-l~~v~~~gg~~~-~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~----~~~~---------------- 218 (259)
++|+-...+ |...|+.++... .|. |.. --.-.|.+++||+=.+|-+|.. |+..
T Consensus 185 ~ivsGgtek~lr~wDprt~~kimkLr----GHT-dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTCKKIMKLR----GHT-DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred EEEecCcccceEEeccccccceeeee----ccc-cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceE
Confidence 888755555 444588776421 121 110 1234566666665555444421 2210
Q ss_pred -----cceeeeeccCCCceEEEEeCCC
Q 039124 219 -----DHFFILLEGESTGRLLRYDPPT 240 (259)
Q Consensus 219 -----~~~~~~~e~~~~GrL~rydp~t 240 (259)
..+..+..+...|.++|-|..+
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEecccCC
Confidence 1123345677778888877664
No 295
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=28.14 E-value=4.8e+02 Score=24.09 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=46.5
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCc-ceEEEeCCCCcEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP-LGLRFNKDTGDLY 162 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP-lGl~~d~~~G~L~ 162 (259)
++.|++.++.+.++..||.+.-++.+..... .+-.-+.| |..+|..+ -.++
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~---------------------------~~~~~~~plL~c~F~d~-~~~~ 69 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLK---------------------------LKFKHGAPLLDCAFADE-STIV 69 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhh---------------------------hheecCCceeeeeccCC-ceEE
Confidence 5677776666777778999888876544110 01112334 36677763 5777
Q ss_pred EEeCCCceEEEECCCCeEEEeee
Q 039124 163 IADAYYGLLVVGSKGGLATPLAT 185 (259)
Q Consensus 163 VaD~~~Gl~~v~~~gg~~~~l~~ 185 (259)
+.+....|.++|..++....+.+
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~igt 92 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQIGT 92 (323)
T ss_pred EeccCceEEEEEecCCcceeecc
Confidence 77776668888888776555543
No 296
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.79 E-value=5.3e+02 Score=27.14 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=33.3
Q ss_pred cCCCc-EEEecCCCCCCcccceeeeeccC--CCceEEEEeCCCCcEEE
Q 039124 201 HKNGS-IFFTDTSKRYNRVDHFFILLEGE--STGRLLRYDPPTKSNSY 245 (259)
Q Consensus 201 d~dG~-IyfTDss~~~~~~~~~~~~~e~~--~~GrL~rydp~tg~~~v 245 (259)
+++|- +|+.+.+..|+...-...++.+. .+|-+|.+||.+|++..
T Consensus 485 ~~e~v~l~vqr~~~H~~~d~~~svlf~~k~s~~gvly~fn~~~Gkv~s 532 (910)
T KOG2103|consen 485 NPEGVKLFVQRTTAHFPLDEDPSVLFVHKGSGNGVLYEFNPITGKVIS 532 (910)
T ss_pred CcccceEEEEeccccCCCCCCCeEEEEeccCCCeEEEEEecCcceeee
Confidence 56664 99999998888755444444444 48899999999987654
No 297
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=27.59 E-value=1.2e+02 Score=26.78 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=32.9
Q ss_pred CCCcceEEEeCCCCcEEEEeC-------CCceEEEECCCCeEEEeeecCCCC----Ccccc---ccEEEcCCCcEEEe
Q 039124 146 CGRPLGLRFNKDTGDLYIADA-------YYGLLVVGSKGGLATPLATQAGGK----PILFA---NDLDVHKNGSIFFT 209 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~-------~~Gl~~v~~~gg~~~~l~~~~~g~----pl~~~---Ndl~vd~dG~IyfT 209 (259)
-++|+-+++..+ |-+.|.+. ..|-|++|.++- |++ .+|. ++..| -++.|++||.|+..
T Consensus 89 T~~~lD~Ai~G~-GfF~v~~~~G~~~yTR~G~F~~d~~G~----Lvt-~~G~~vl~~I~~p~~~~~~~i~~dG~I~~~ 160 (261)
T PRK12693 89 TGNSLDVAIEGQ-GFFQVQLPDGTIAYTRDGSFKLDQDGQ----LVT-SGGYPLQPEITIPENATSITIGTDGTVSVT 160 (261)
T ss_pred CCCcceEEECCC-cEEEEEcCCCCeEEeeCCCeeECCCCC----EEC-CCCCEEeeecccCCCCceEEECCCCeEEEe
Confidence 467788877763 54444321 124566666543 222 1222 24445 26999999999774
No 298
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=27.08 E-value=5.3e+02 Score=24.22 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=75.2
Q ss_pred CcccCCCeEEcc--CCCCCceeEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCcccc-ccccCcccccccccc
Q 039124 65 LSRLVTGKLEFV--DEVFGPESLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEK-LCARGVDSTTAKQWK 141 (259)
Q Consensus 65 n~~L~~~e~l~~--~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~-~~~g~~~~~~~~~~~ 141 (259)
.-..|.+.+.|+ |.-.+=.+.+|.++.....|...||.+..|+.+-. +. ... . .+ +-.|+ ..
T Consensus 262 dG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr-Y~---~~q-D--pk~Lk~g~--------~p 326 (420)
T KOG2096|consen 262 DGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR-YE---AGQ-D--PKILKEGS--------AP 326 (420)
T ss_pred CcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce-Ee---cCC-C--chHhhcCC--------cc
Confidence 334555555553 33445567889888888999999999887776532 11 000 0 00 00000 11
Q ss_pred ccCcCCCcceEEEeCCCCcEEEEeCCCceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecC
Q 039124 142 HEKWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDT 211 (259)
Q Consensus 142 ~~~~~grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDs 211 (259)
.....+.|+-|.+.+ +|..+.+.....|-.+..++|+...-+..+-+ .-...|..+++|+...|-.
T Consensus 327 l~aag~~p~RL~lsP-~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~---~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSP-SGDSLAVSFGSDLKVFASEDGKDYPELEDIHS---TTISSISYSSDGKYIATCG 392 (420)
T ss_pred hhhcCCCceEEEeCC-CCcEEEeecCCceEEEEcccCccchhHHHhhc---CceeeEEecCCCcEEeeec
Confidence 233466788899999 59988776666677776666643322222222 2356788899998777653
No 299
>COG5134 Uncharacterized conserved protein [Function unknown]
Probab=26.94 E-value=66 Score=28.09 Aligned_cols=31 Identities=16% Similarity=0.454 Sum_probs=24.6
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCCCceEEEECC
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAYYGLLVVGSK 176 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~~Gl~~v~~~ 176 (259)
+.|++|+.++-|+. ...||... .|+..++++
T Consensus 83 ~~C~n~i~~RTDPk-N~~YV~Es-Gg~R~i~pq 113 (272)
T COG5134 83 HLCSNPIDVRTDPK-NTEYVVES-GGRRKIEPQ 113 (272)
T ss_pred cCCCCceeeecCCC-CceEEEec-CceeecCcc
Confidence 46999999999996 67899876 467777654
No 300
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=26.87 E-value=5.4e+02 Score=24.21 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=24.8
Q ss_pred ccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 039124 75 FVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMG 108 (259)
Q Consensus 75 ~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~ 108 (259)
.++++.+..|++|.++|..+|++-.. .|..++.
T Consensus 154 h~de~taAhsL~Fs~DGeqlfaGykr-cirvFdt 186 (406)
T KOG2919|consen 154 HQDEYTAAHSLQFSPDGEQLFAGYKR-CIRVFDT 186 (406)
T ss_pred hHHhhhhheeEEecCCCCeEeecccc-eEEEeec
Confidence 34568899999999999999998654 3544443
No 301
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=26.26 E-value=8.3e+02 Score=26.17 Aligned_cols=117 Identities=14% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCceeEEEcCCCCEEEEEcCCCeEEEEeCCC-ccEEEEEEeecCccccccccCcccccccccc----ccCcCCCcceEEE
Q 039124 80 FGPESLEFDGLGRGPYTGLADGRIVRWMGEN-VGWETFAIVTSNWSEKLCARGVDSTTAKQWK----HEKWCGRPLGLRF 154 (259)
Q Consensus 80 ~gPE~ia~D~~G~~~yt~~~~G~I~ri~~~~-~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~grPlGl~~ 154 (259)
..=.|+.|.++|..++.|..|.-|..|.-.. ..-..|..++. ++. .+.|. ....-+.-..+++
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~---~~~---------vE~wk~~~~l~~H~~DV~Dv~W 137 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGG---AKN---------VESWKVVSILRGHDSDVLDVNW 137 (942)
T ss_pred CceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccc---ccc---------cceeeEEEEEecCCCccceecc
Confidence 3345677999999888888887766665542 10111211000 000 01111 1222334457888
Q ss_pred eCCCCcEEEEeCC-CceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCC
Q 039124 155 NKDTGDLYIADAY-YGLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 155 d~~~G~L~VaD~~-~Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~ 213 (259)
++ ++.++|.-.. +-+...+..+-+ .+....|. ...+-++.+||-|..+.|-+..
T Consensus 138 sp-~~~~lvS~s~DnsViiwn~~tF~---~~~vl~~H-~s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 138 SP-DDSLLVSVSLDNSVIIWNAKTFE---LLKVLRGH-QSLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred CC-CccEEEEecccceEEEEccccce---eeeeeecc-cccccceEECCccCeeeeecCC
Confidence 88 4777775433 347777766542 22223332 3468899999999977776553
No 302
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=25.79 E-value=65 Score=32.27 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=39.9
Q ss_pred eEEEeCCCCcEEEEeCCCceEEEECCCCeEEEe--eecCCCCCccccccEEEcCCCcEEEecCCC
Q 039124 151 GLRFNKDTGDLYIADAYYGLLVVGSKGGLATPL--ATQAGGKPILFANDLDVHKNGSIFFTDTSK 213 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~Gl~~v~~~gg~~~~l--~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~ 213 (259)
=|+++. +|.||..+...|.|-|-+.++..+.- -..+.... .....+++++||.+|+-....
T Consensus 293 wm~~~~-dG~l~AiNPE~GfFGVapGtn~~tnP~am~~l~~~n-~IFTNValt~DG~vwWeG~~~ 355 (601)
T PRK04210 293 WIRPGE-DGRLYAINPEAGFFGVAPGTNEKTNPNAMATLKPGN-VIFTNVALTDDGDVWWEGMTE 355 (601)
T ss_pred eeeECC-CCcEEEEccCCCeeEeCCCCCCCcCHHHHHhcccCC-eEEeeeEECCCCCeecCCCCC
Confidence 467776 59999998889999887766542211 11121111 234568888999999977664
No 303
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=25.69 E-value=6.6e+02 Score=25.93 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=33.8
Q ss_pred CCCcceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEE
Q 039124 146 CGRPLGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFF 208 (259)
Q Consensus 146 ~grPlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~Iyf 208 (259)
-+.-.|+++.++ |+++..-...| |+...|..++ +.+- +-.|..-.+---+...-||++.+
T Consensus 720 tdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e-~pv~-Eg~gpvgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 720 TDQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSRE-QPVY-EGKGPVGTRGARILWACDGRIVI 780 (1012)
T ss_pred cCceeEEEECCC-CcceeeeecCceEEEeCCCCCC-Cccc-cCCCCccCcceeEEEEecCcEEE
Confidence 344679999994 88875544455 5555777654 3332 22332223344556667887443
No 304
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.68 E-value=8.6e+02 Score=26.16 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=49.7
Q ss_pred CeEEccCCCCCceeEEEcCCCCEEEEEcCCCe--EEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCC
Q 039124 71 GKLEFVDEVFGPESLEFDGLGRGPYTGLADGR--IVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGR 148 (259)
Q Consensus 71 ~e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~--I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gr 148 (259)
...+.+|.-.|=...||.+.--++.++..|.. +||++... .|+. + .|.|.+ +.
T Consensus 198 VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aWEv---------D-tcrgH~--------------nn 252 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEV---------D-TCRGHY--------------NN 252 (1202)
T ss_pred eeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-ceee---------h-hhhccc--------------CC
Confidence 35566777788888999876666666665554 44554432 2543 1 465321 22
Q ss_pred cceEEEeCCCCcEEEEeCCCceEEE-ECC
Q 039124 149 PLGLRFNKDTGDLYIADAYYGLLVV-GSK 176 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~Gl~~v-~~~ 176 (259)
--++-|++. .+|+++.+..+.++| |.+
T Consensus 253 Vssvlfhp~-q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 253 VSSVLFHPH-QDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred cceEEecCc-cceeEecCCCccEEEEecc
Confidence 347889984 899998877764444 543
No 305
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.63 E-value=2.9e+02 Score=26.34 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=26.4
Q ss_pred eEEccCCCCCceeEEEcCCCCEEEEEcCCCeEEEEeC
Q 039124 72 KLEFVDEVFGPESLEFDGLGRGPYTGLADGRIVRWMG 108 (259)
Q Consensus 72 e~l~~~~l~gPE~ia~D~~G~~~yt~~~~G~I~ri~~ 108 (259)
..+.-..+.|=.++.+|++|+.||+-..+|+--|.+.
T Consensus 61 ~~~~~~p~~G~Sgi~~d~~~~~f~~lSDng~g~K~nS 97 (391)
T COG4222 61 LPFNGQPVGGFSGITYDPQGDGYWALSDNGRGSKLNS 97 (391)
T ss_pred cccCCCCCCceeeeEEccCCCeEEEEeCCCcccccCc
Confidence 3333335778889999999988888777777666543
No 306
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=25.37 E-value=85 Score=17.87 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=11.3
Q ss_pred CceEEEEeCCCCcEE
Q 039124 230 TGRLLRYDPPTKSNS 244 (259)
Q Consensus 230 ~GrL~rydp~tg~~~ 244 (259)
.|+.|.||..|++++
T Consensus 12 ~g~~yy~n~~t~~s~ 26 (32)
T smart00456 12 DGRPYYYNHETKETQ 26 (32)
T ss_pred CCCEEEEECCCCCEE
Confidence 388888888877654
No 307
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=24.95 E-value=5e+02 Score=23.15 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=32.7
Q ss_pred cceEEEeCCCCcEEEEeCCCceE--EEECCCCeEEEeeecCCCCCccccccEEEcCCC-cEEEecCC
Q 039124 149 PLGLRFNKDTGDLYIADAYYGLL--VVGSKGGLATPLATQAGGKPILFANDLDVHKNG-SIFFTDTS 212 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~Gl~--~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG-~IyfTDss 212 (259)
...+...+ +.++|+|...|+. +++.+......++..... . ..-.+++-.|+ .+.++|..
T Consensus 132 i~sl~~~~--~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~--~-~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 132 ITSLSVFK--NYILVGDAMKSVSLLRYDEENNKLILVARDYQP--R-WVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp EEEEEEET--TEEEEEESSSSEEEEEEETTTE-EEEEEEESS---B-EEEEEEEE-SSSEEEEEETT
T ss_pred EEEEeccc--cEEEEEEcccCEEEEEEEccCCEEEEEEecCCC--c-cEEEEEEecCCcEEEEEcCC
Confidence 45565554 4888999999954 567766556666654332 1 22333333222 56666654
No 308
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=24.88 E-value=3.7e+02 Score=25.37 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=35.7
Q ss_pred cceEEEeCCCCcEEEEeCCCc------eEEEECCCCeEEEeee----cCCCCCcccc--ccEEEcCCCc--EEEecCCC
Q 039124 149 PLGLRFNKDTGDLYIADAYYG------LLVVGSKGGLATPLAT----QAGGKPILFA--NDLDVHKNGS--IFFTDTSK 213 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~G------l~~v~~~gg~~~~l~~----~~~g~pl~~~--Ndl~vd~dG~--IyfTDss~ 213 (259)
|+-+.-.. +|.+|+|.-..+ |+-..--+...++++. .+.|..-+.- -.+.+|.+|+ |+|+|...
T Consensus 185 ~yNmgAl~-nGH~Y~asLSG~~~SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaa 262 (442)
T PF15416_consen 185 SYNMGALV-NGHSYLASLSGGKASPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAA 262 (442)
T ss_pred ccchhhhc-CCeEEEEeccCCCCCceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCcc
Confidence 44454445 589999865433 5555433444566654 2344322222 2456677665 99998764
No 309
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.63 E-value=3.2e+02 Score=26.06 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=44.4
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLYI 163 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~V 163 (259)
++..++.|+.+|++..-|.+..++..+.... .|. +...-|.+-+|..++ ++.++
T Consensus 252 ~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~------------g~~------------~kg~tGsirsih~hp-~~~~l- 305 (412)
T KOG3881|consen 252 STGLTPSGNFIYTGNTKGQLAKFDLRGGKLL------------GCG------------LKGITGSIRSIHCHP-THPVL- 305 (412)
T ss_pred eeeecCCCcEEEEecccchhheecccCceee------------ccc------------cCCccCCcceEEEcC-CCceE-
Confidence 5677789999999999999999998765211 121 224457788998887 45554
Q ss_pred EeCCC-c-eEEEECCC
Q 039124 164 ADAYY-G-LLVVGSKG 177 (259)
Q Consensus 164 aD~~~-G-l~~v~~~g 177 (259)
|-.+. . |...|.++
T Consensus 306 as~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 306 ASCGLDRYVRIHDIKT 321 (412)
T ss_pred EeeccceeEEEeeccc
Confidence 43332 2 33336665
No 310
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=24.34 E-value=3.2e+02 Score=28.28 Aligned_cols=60 Identities=27% Similarity=0.335 Sum_probs=41.1
Q ss_pred cceEEEeCCCCcEEEEeCCCceEEEECCCC-eEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC
Q 039124 149 PLGLRFNKDTGDLYIADAYYGLLVVGSKGG-LATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 149 PlGl~~d~~~G~L~VaD~~~Gl~~v~~~gg-~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
-+.++|.+| |.-+|..+...++.+|+..| ...+|- |. --..|-++-+.||..+.|-++.+
T Consensus 15 i~d~afkPD-GsqL~lAAg~rlliyD~ndG~llqtLK----gH-KDtVycVAys~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 15 INDIAFKPD-GTQLILAAGSRLLVYDTSDGTLLQPLK----GH-KDTVYCVAYAKDGKRFASGSADK 75 (1081)
T ss_pred hheeEECCC-CceEEEecCCEEEEEeCCCcccccccc----cc-cceEEEEEEccCCceeccCCCce
Confidence 467899995 65555556777999998654 333332 21 12578899999999998877654
No 311
>PTZ00486 apyrase Superfamily; Provisional
Probab=24.31 E-value=5.1e+02 Score=24.33 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=35.0
Q ss_pred CCcEEEEeCCCc-eEEEECCCCeE--EEeeecCCCC-CccccccEEEcCCCcEEEecCCCCC
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGLA--TPLATQAGGK-PILFANDLDVHKNGSIFFTDTSKRY 215 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~~--~~l~~~~~g~-pl~~~Ndl~vd~dG~IyfTDss~~~ 215 (259)
+|.||..|-..| +++++.+++.+ .++...-+|. .-.|=.--+.-.|..+|+.-.+..|
T Consensus 124 ngkLys~DDrTGiVy~i~~~~~~~~PwvIL~dGdG~~~kGfK~EWaTVKd~~LyVGs~Gkew 185 (352)
T PTZ00486 124 NGKLYGFDDRTGIVYEIDIDKKKAYPRHILSDGNGNSDKGMKIEWATVYDDKLYVGSIGKEF 185 (352)
T ss_pred CCEEEEEeCCceEEEEEEcCCCcEeeEEEEecCCCCCCCCcceeeEEEECCEEEEeccccee
Confidence 489999999999 68887665433 3333444442 1122334444477788887666444
No 312
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=24.08 E-value=4.1e+02 Score=24.67 Aligned_cols=55 Identities=24% Similarity=0.392 Sum_probs=32.0
Q ss_pred eEEEeCCCCcEEEEeCCCc---eEEEECCCCeEEE-eeecCCCCCccccccEEEcCCCcEEEec
Q 039124 151 GLRFNKDTGDLYIADAYYG---LLVVGSKGGLATP-LATQAGGKPILFANDLDVHKNGSIFFTD 210 (259)
Q Consensus 151 Gl~~d~~~G~L~VaD~~~G---l~~v~~~gg~~~~-l~~~~~g~pl~~~Ndl~vd~dG~IyfTD 210 (259)
.|+|.+...++++|-+..| ++.|... |.... ...+.+|. +=|++-..||.-.|+-
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~~ka~~~~~~P----vL~v~WsddgskVf~g 90 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLVPKAQQSHDGP----VLDVCWSDDGSKVFSG 90 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecC-CcccchhhhccCCC----eEEEEEccCCceEEee
Confidence 6788885578887876665 5555543 32211 11234443 3478888888754443
No 313
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.66 E-value=48 Score=25.02 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=10.5
Q ss_pred ehHHHHHHHHHHHHhc
Q 039124 15 HPFLFVLALVLGFLIM 30 (259)
Q Consensus 15 ~~~~~~~~~~~~~~~~ 30 (259)
+.||++++++|+++++
T Consensus 4 K~~llL~l~LA~lLli 19 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLI 19 (95)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4577777777666555
No 314
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=23.23 E-value=98 Score=17.27 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=10.9
Q ss_pred CceEEEEeCCCCcEE
Q 039124 230 TGRLLRYDPPTKSNS 244 (259)
Q Consensus 230 ~GrL~rydp~tg~~~ 244 (259)
.|+.|.||..|++++
T Consensus 11 ~g~~yy~n~~t~~s~ 25 (31)
T cd00201 11 DGRVYYYNHNTKETQ 25 (31)
T ss_pred CCCEEEEECCCCCEe
Confidence 378888888777653
No 315
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=23.22 E-value=5.8e+02 Score=23.33 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=64.7
Q ss_pred cCCCCCceeEEEcCC-CCEEEEEcCCCeEEEEeCC-CccEEEEEEeecCccccccccCccccccccccccCcCCCc-ceE
Q 039124 76 VDEVFGPESLEFDGL-GRGPYTGLADGRIVRWMGE-NVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP-LGL 152 (259)
Q Consensus 76 ~~~l~gPE~ia~D~~-G~~~yt~~~~G~I~ri~~~-~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP-lGl 152 (259)
.+....--++||.+- |.+++++-.+..|.-++.. +..|+-.... ...+-|. ..+
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vl-----------------------d~~hkrsVRsv 67 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVL-----------------------DDGHKRSVRSV 67 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEec-----------------------cccchheeeee
Confidence 444444557899886 8888888888777777665 3323321111 0112222 368
Q ss_pred EEeCCCCcEEEEeCCCceEEEEC-CCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC
Q 039124 153 RFNKDTGDLYIADAYYGLLVVGS-KGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 153 ~~d~~~G~L~VaD~~~Gl~~v~~-~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
|+.+. |+++++.++.+-..+-. ..++.+.++ .++|. =+-.-.++..++|+...|-+..+
T Consensus 68 Awsp~-g~~La~aSFD~t~~Iw~k~~~efecv~-~lEGH-EnEVK~Vaws~sG~~LATCSRDK 127 (312)
T KOG0645|consen 68 AWSPH-GRYLASASFDATVVIWKKEDGEFECVA-TLEGH-ENEVKCVAWSASGNYLATCSRDK 127 (312)
T ss_pred eecCC-CcEEEEeeccceEEEeecCCCceeEEe-eeecc-ccceeEEEEcCCCCEEEEeeCCC
Confidence 88884 88776666655444432 234455544 34552 23455677777887777766543
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.45 E-value=1e+02 Score=29.50 Aligned_cols=32 Identities=19% Similarity=0.085 Sum_probs=27.1
Q ss_pred CCCceeEEEcC-CCCEEEEEcCCCeEEEEeCCC
Q 039124 79 VFGPESLEFDG-LGRGPYTGLADGRIVRWMGEN 110 (259)
Q Consensus 79 l~gPE~ia~D~-~G~~~yt~~~~G~I~ri~~~~ 110 (259)
-..++|.+||. +-+.+|+|..+|.|+.+|...
T Consensus 235 ~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 235 YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 36889999998 456899999999999998754
No 317
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=21.76 E-value=2.9e+02 Score=28.92 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=39.3
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcc-eEEEeCCCCcEE
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPL-GLRFNKDTGDLY 162 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPl-Gl~~d~~~G~L~ 162 (259)
|+|.+.+|. +.++..+|.|.-++.-+.. |. ..-+.+|.|. ||.+.. +|.-+
T Consensus 582 ~~aTt~~G~-iavgs~~G~IRLyd~~g~~----AK----------------------T~lp~lG~pI~~iDvt~-DGkwi 633 (794)
T PF08553_consen 582 CFATTEDGY-IAVGSNKGDIRLYDRLGKR----AK----------------------TALPGLGDPIIGIDVTA-DGKWI 633 (794)
T ss_pred EEEecCCce-EEEEeCCCcEEeecccchh----hh----------------------hcCCCCCCCeeEEEecC-CCcEE
Confidence 566666676 6777777877777643321 10 1124567885 999998 48877
Q ss_pred EEeCCCceEEEE
Q 039124 163 IADAYYGLLVVG 174 (259)
Q Consensus 163 VaD~~~Gl~~v~ 174 (259)
+|-...-|+.++
T Consensus 634 laTc~tyLlLi~ 645 (794)
T PF08553_consen 634 LATCKTYLLLID 645 (794)
T ss_pred EEeecceEEEEE
Confidence 764444466555
No 318
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=21.72 E-value=3.8e+02 Score=25.81 Aligned_cols=28 Identities=36% Similarity=0.342 Sum_probs=24.3
Q ss_pred eEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 84 SLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 84 ~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
|++||..++.+|++-.+|+|++-+.+..
T Consensus 110 ~L~F~~~N~~~~SG~~~~~VI~HDiEt~ 137 (609)
T KOG4227|consen 110 SLEFDLENRFLYSGERWGTVIKHDIETK 137 (609)
T ss_pred EEEEccCCeeEecCCCcceeEeeecccc
Confidence 7899988888999999999998877654
No 319
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=21.60 E-value=2.5e+02 Score=25.69 Aligned_cols=58 Identities=16% Similarity=0.312 Sum_probs=28.4
Q ss_pred CCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCc-cccccEEEcCCCcEEEecCCCCC
Q 039124 158 TGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPI-LFANDLDVHKNGSIFFTDTSKRY 215 (259)
Q Consensus 158 ~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl-~~~Ndl~vd~dG~IyfTDss~~~ 215 (259)
+|.||..|-..| ++++.-+.-...++...-+|..- .|=.--+.-.|+.+|+.-.+..|
T Consensus 63 ngkLys~DDrTGiVyeI~~~~~vPwviL~dGdG~~~kGfK~EWaTVKd~~LyvGs~Gkew 122 (291)
T PF06079_consen 63 NGKLYSFDDRTGIVYEIKGDKAVPWVILSDGDGNTSKGFKAEWATVKDDKLYVGSIGKEW 122 (291)
T ss_dssp TTEEEEEETTT-EEEEEETTEEEEEEE-BSTTTTESSB----EEEEETTEEEEE--SS-E
T ss_pred CCEEeeeeCCCceEEEEeCCceeceEEEeCCCCCccccccceeeEEeCCeeeeccCCCce
Confidence 489999999999 68887552222233333344211 11112244457788877655443
No 320
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.42 E-value=2.4e+02 Score=30.32 Aligned_cols=135 Identities=15% Similarity=0.207 Sum_probs=0.0
Q ss_pred eEEEcC-CCCEEEEEcCCCeEEEEeCCCccEEEEEEeecCccccccccCccccccccccccCcCCCcceEEEeCCCCcEE
Q 039124 84 SLEFDG-LGRGPYTGLADGRIVRWMGENVGWETFAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRPLGLRFNKDTGDLY 162 (259)
Q Consensus 84 ~ia~D~-~G~~~yt~~~~G~I~ri~~~~~~~~~fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grPlGl~~d~~~G~L~ 162 (259)
++-|.+ +++++=.|..+|+|+.||...- -+.|..++.+. ......|++..+.-.++
T Consensus 121 gLDfN~~q~nlLASGa~~geI~iWDlnn~-~tP~~~~~~~~----------------------~~eI~~lsWNrkvqhIL 177 (1049)
T KOG0307|consen 121 GLDFNPFQGNLLASGADDGEILIWDLNKP-ETPFTPGSQAP----------------------PSEIKCLSWNRKVSHIL 177 (1049)
T ss_pred eeeccccCCceeeccCCCCcEEEeccCCc-CCCCCCCCCCC----------------------cccceEeccchhhhHHh
Q ss_pred EEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCc---EEEecCCCC-----CCccc--------------
Q 039124 163 IADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGS---IFFTDTSKR-----YNRVD-------------- 219 (259)
Q Consensus 163 VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~---IyfTDss~~-----~~~~~-------------- 219 (259)
.+-...| ....|.+.. +.++.-.+...-...++|+-+||+. +--||..+. |+.|.
T Consensus 178 AS~s~sg~~~iWDlr~~--~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G 255 (1049)
T KOG0307|consen 178 ASGSPSGRAVIWDLRKK--KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG 255 (1049)
T ss_pred hccCCCCCceeccccCC--CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc
Q ss_pred ---------ceeeeeccCCCceEEEEeCCCCcE
Q 039124 220 ---------HFFILLEGESTGRLLRYDPPTKSN 243 (259)
Q Consensus 220 ---------~~~~~~e~~~~GrL~rydp~tg~~ 243 (259)
--..+++....+|+++.|++|||+
T Consensus 256 ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV 288 (1049)
T ss_pred eeeeccCCCCchhhhcccCCCCeeEecCCCceE
No 321
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.12 E-value=1.3e+02 Score=30.35 Aligned_cols=29 Identities=28% Similarity=0.168 Sum_probs=25.9
Q ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeCCCc
Q 039124 83 ESLEFDGLGRGPYTGLADGRIVRWMGENV 111 (259)
Q Consensus 83 E~ia~D~~G~~~yt~~~~G~I~ri~~~~~ 111 (259)
.+++|+++|+++-++..||+|.-.|.+..
T Consensus 66 ~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 66 ASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred eeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 68999999999999999999998887654
No 322
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=21.11 E-value=8e+02 Score=24.14 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=58.0
Q ss_pred CCCce-eEEEcCCCCEEEEEcCCCeEEEEeCCCccEEE-EEEeecCccccccccCccccccccccccCcCCCc-ceEEEe
Q 039124 79 VFGPE-SLEFDGLGRGPYTGLADGRIVRWMGENVGWET-FAIVTSNWSEKLCARGVDSTTAKQWKHEKWCGRP-LGLRFN 155 (259)
Q Consensus 79 l~gPE-~ia~D~~G~~~yt~~~~G~I~ri~~~~~~~~~-fa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~grP-lGl~~d 155 (259)
-.||- ++-|...|+.+.++..||++..|+...+.+.. |. -+..| +.+.+.
T Consensus 275 HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~---------------------------~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 275 HKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE---------------------------FHSAPALDVDWQ 327 (524)
T ss_pred cCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee---------------------------eccCCccceEEe
Confidence 34553 56777778777777888888888875442222 21 12234 556555
Q ss_pred CCCCcEEEEeCCC--ceEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCC
Q 039124 156 KDTGDLYIADAYY--GLLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTS 212 (259)
Q Consensus 156 ~~~G~L~VaD~~~--Gl~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss 212 (259)
. +..+-.++... .+++|+.++-. .++.. -. +-.|.|..++.|.+..|-|.
T Consensus 328 ~-~~~F~ts~td~~i~V~kv~~~~P~-~t~~G-H~----g~V~alk~n~tg~LLaS~Sd 379 (524)
T KOG0273|consen 328 S-NDEFATSSTDGCIHVCKVGEDRPV-KTFIG-HH----GEVNALKWNPTGSLLASCSD 379 (524)
T ss_pred c-CceEeecCCCceEEEEEecCCCcc-eeeec-cc----CceEEEEECCCCceEEEecC
Confidence 4 34554454443 36788766542 33322 22 34688888888887776544
No 323
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=21.09 E-value=4.2e+02 Score=20.90 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=17.6
Q ss_pred ccccccEEEcCCCcEEEecCCCC
Q 039124 192 ILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 192 l~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
..-|-.+.+..||+||||-.-.+
T Consensus 81 ~~ep~~l~~l~dgri~~ts~~~d 103 (123)
T PF11763_consen 81 FSEPLDLHTLSDGRIWFTSNEYD 103 (123)
T ss_pred CCCcEEEEEecCCcEEEEccccc
Confidence 34567899999999999874443
No 324
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=20.87 E-value=6.4e+02 Score=23.38 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=39.1
Q ss_pred CcCCCcceEEEeCCCCcEEEEeCCCc-eEEEECCCCeEEEeeecCCCCCccccccEEEcCCCcEEEecCCCC
Q 039124 144 KWCGRPLGLRFNKDTGDLYIADAYYG-LLVVGSKGGLATPLATQAGGKPILFANDLDVHKNGSIFFTDTSKR 214 (259)
Q Consensus 144 ~~~grPlGl~~d~~~G~L~VaD~~~G-l~~v~~~gg~~~~l~~~~~g~pl~~~Ndl~vd~dG~IyfTDss~~ 214 (259)
+..|--+-++|++ +|.+++.-.+.. |+..+..+. .+.... ..|. -...-|+...+||+..++-+..+
T Consensus 45 gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~-lkgH-sgAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 45 GHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGD-CENFWV-LKGH-SGAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred CCcceEEEEEECC-CCCeEeecCCcceEEEEecccc-ccceee-eccc-cceeEeeeeccCCCEEEEecCCc
Confidence 3345556789999 599887755544 444443322 122211 1121 12567888899999888876543
No 325
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=20.19 E-value=2.1e+02 Score=17.40 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=23.8
Q ss_pred EEcCCCcEEEecCCCCCCcccceeeeeccCCCceEEEEeCCCCcEEEe
Q 039124 199 DVHKNGSIFFTDTSKRYNRVDHFFILLEGESTGRLLRYDPPTKSNSYC 246 (259)
Q Consensus 199 ~vd~dG~IyfTDss~~~~~~~~~~~~~e~~~~GrL~rydp~tg~~~vl 246 (259)
++.-++.||+.=.... ....+-.+++||+.+++.+.+
T Consensus 7 ~~~~~~~iyv~GG~~~-----------~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDG-----------NNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEETTEEEEEEEBES-----------TSSBEEEEEEEETTTTEEEEE
T ss_pred EEEECCEEEEEeeecc-----------cCceeeeEEEEeCCCCEEEEc
Confidence 3444667887543221 134455899999999887765
Done!