Query 039126
Match_columns 295
No_of_seqs 165 out of 2531
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:30:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 6.2E-25 1.3E-29 219.2 20.0 146 1-146 596-741 (1153)
2 PLN00113 leucine-rich repeat r 99.9 1.8E-22 3.9E-27 200.1 16.2 221 15-241 139-366 (968)
3 PLN00113 leucine-rich repeat r 99.9 2.3E-22 4.9E-27 199.4 15.3 198 14-214 91-295 (968)
4 PLN03210 Resistant to P. syrin 99.8 2E-17 4.3E-22 165.7 18.3 237 6-248 647-947 (1153)
5 KOG0444 Cytoskeletal regulator 99.7 8.1E-20 1.8E-24 163.1 -2.3 227 8-247 94-378 (1255)
6 KOG4194 Membrane glycoprotein 99.7 8.6E-20 1.9E-24 161.5 -2.3 220 15-242 196-427 (873)
7 KOG0444 Cytoskeletal regulator 99.7 2.1E-19 4.4E-24 160.5 -2.1 211 5-222 137-381 (1255)
8 KOG4194 Membrane glycoprotein 99.7 1.1E-17 2.4E-22 148.3 3.1 233 14-253 147-413 (873)
9 KOG0618 Serine/threonine phosp 99.7 9E-18 2E-22 155.6 0.1 269 12-293 237-540 (1081)
10 KOG0617 Ras suppressor protein 99.7 2.3E-18 5.1E-23 130.8 -3.9 158 5-186 22-182 (264)
11 PRK15370 E3 ubiquitin-protein 99.6 1.6E-15 3.4E-20 143.9 10.9 216 4-242 188-426 (754)
12 PRK15370 E3 ubiquitin-protein 99.6 3.4E-15 7.4E-20 141.7 10.8 204 15-247 177-382 (754)
13 KOG0472 Leucine-rich repeat pr 99.6 2.6E-18 5.6E-23 146.1 -9.4 212 17-242 92-308 (565)
14 KOG0472 Leucine-rich repeat pr 99.6 4.8E-18 1E-22 144.5 -8.5 215 14-242 66-286 (565)
15 PRK15387 E3 ubiquitin-protein 99.6 4.3E-14 9.2E-19 133.8 13.9 214 4-248 211-461 (788)
16 KOG0618 Serine/threonine phosp 99.5 7.3E-16 1.6E-20 143.2 -2.8 204 5-215 252-488 (1081)
17 cd00116 LRR_RI Leucine-rich re 99.5 1.2E-14 2.6E-19 126.5 4.4 232 15-248 22-294 (319)
18 KOG0617 Ras suppressor protein 99.5 1.8E-15 3.9E-20 115.1 -3.7 187 35-248 29-216 (264)
19 PRK15387 E3 ubiquitin-protein 99.4 7.4E-13 1.6E-17 125.5 10.8 175 16-214 282-456 (788)
20 cd00116 LRR_RI Leucine-rich re 99.4 7.3E-14 1.6E-18 121.6 2.6 225 14-241 49-317 (319)
21 KOG4237 Extracellular matrix p 99.3 3.9E-13 8.5E-18 114.6 -0.1 241 5-252 57-367 (498)
22 KOG4237 Extracellular matrix p 99.1 1.3E-11 2.8E-16 105.5 -0.8 224 14-247 42-337 (498)
23 KOG0532 Leucine-rich repeat (L 99.1 1E-11 2.2E-16 110.6 -2.7 201 4-213 60-270 (722)
24 KOG4658 Apoptotic ATPase [Sign 99.0 1.4E-10 3E-15 112.3 3.7 104 14-118 543-651 (889)
25 KOG2120 SCF ubiquitin ligase, 99.0 2E-11 4.2E-16 100.9 -3.7 179 17-214 186-374 (419)
26 COG4886 Leucine-rich repeat (L 99.0 1.2E-09 2.6E-14 98.1 7.1 184 21-213 98-287 (394)
27 KOG0532 Leucine-rich repeat (L 98.9 2.5E-11 5.5E-16 108.1 -4.4 180 4-188 85-271 (722)
28 KOG3207 Beta-tubulin folding c 98.9 2.2E-10 4.7E-15 99.2 0.3 197 14-212 119-335 (505)
29 COG4886 Leucine-rich repeat (L 98.9 1.8E-09 3.8E-14 97.1 6.2 180 14-199 114-299 (394)
30 PF14580 LRR_9: Leucine-rich r 98.9 9.7E-10 2.1E-14 86.4 3.8 111 6-120 9-124 (175)
31 KOG3207 Beta-tubulin folding c 98.9 9.2E-10 2E-14 95.4 2.7 176 14-190 144-339 (505)
32 KOG4658 Apoptotic ATPase [Sign 98.9 1E-09 2.2E-14 106.4 2.7 236 6-248 513-787 (889)
33 KOG2120 SCF ubiquitin ligase, 98.8 9.9E-11 2.1E-15 96.8 -5.7 178 63-245 186-377 (419)
34 PLN03150 hypothetical protein; 98.8 2.4E-08 5.2E-13 94.5 9.0 104 17-120 419-526 (623)
35 PF14580 LRR_9: Leucine-rich r 98.8 7.5E-09 1.6E-13 81.4 4.5 104 84-190 17-126 (175)
36 PRK15386 type III secretion pr 98.7 8.6E-08 1.9E-12 84.5 10.2 74 35-118 48-121 (426)
37 KOG1909 Ran GTPase-activating 98.6 1.1E-08 2.3E-13 86.6 1.3 228 14-243 28-310 (382)
38 KOG1259 Nischarin, modulator o 98.6 1E-08 2.2E-13 85.3 0.7 13 282-294 477-489 (490)
39 PLN03150 hypothetical protein; 98.6 1.2E-07 2.7E-12 89.7 7.9 104 111-215 420-527 (623)
40 KOG1259 Nischarin, modulator o 98.6 1E-08 2.2E-13 85.3 0.4 126 15-164 283-410 (490)
41 PF13855 LRR_8: Leucine rich r 98.6 5.1E-08 1.1E-12 63.0 3.5 58 16-73 1-60 (61)
42 KOG1909 Ran GTPase-activating 98.5 1.6E-08 3.5E-13 85.5 -0.5 210 32-242 23-281 (382)
43 KOG4341 F-box protein containi 98.5 2E-08 4.3E-13 86.9 -0.3 231 14-249 162-444 (483)
44 PRK15386 type III secretion pr 98.4 1.1E-06 2.3E-11 77.7 8.1 133 14-163 50-187 (426)
45 PF13855 LRR_8: Leucine rich r 98.4 4E-07 8.6E-12 58.8 3.8 58 131-188 2-60 (61)
46 KOG4341 F-box protein containi 98.3 3.9E-08 8.4E-13 85.1 -3.6 96 150-247 291-388 (483)
47 KOG2982 Uncharacterized conser 98.2 8.1E-07 1.8E-11 74.0 2.6 176 15-192 70-264 (418)
48 KOG0531 Protein phosphatase 1, 98.1 2.8E-07 6.1E-12 83.3 -1.6 170 15-190 94-268 (414)
49 PF12799 LRR_4: Leucine Rich r 98.1 5.2E-06 1.1E-10 49.5 3.9 37 16-52 1-37 (44)
50 KOG0531 Protein phosphatase 1, 98.1 7.4E-07 1.6E-11 80.6 0.2 188 15-212 71-264 (414)
51 KOG1859 Leucine-rich repeat pr 98.0 1.3E-07 2.9E-12 87.2 -6.9 123 63-190 165-292 (1096)
52 PF12799 LRR_4: Leucine Rich r 97.7 6.9E-05 1.5E-09 44.6 3.9 33 131-163 2-34 (44)
53 KOG3665 ZYG-1-like serine/thre 97.6 7.7E-05 1.7E-09 71.2 5.0 100 86-187 122-230 (699)
54 KOG1947 Leucine rich repeat pr 97.5 2.3E-05 5E-10 72.0 0.5 107 15-121 187-307 (482)
55 KOG3665 ZYG-1-like serine/thre 97.5 8.8E-05 1.9E-09 70.8 3.5 127 15-143 121-263 (699)
56 KOG1859 Leucine-rich repeat pr 97.5 2.4E-06 5.2E-11 79.2 -6.7 100 15-120 186-290 (1096)
57 KOG2982 Uncharacterized conser 97.4 6.8E-05 1.5E-09 62.9 1.7 87 151-239 197-287 (418)
58 KOG1644 U2-associated snRNP A' 97.4 0.00041 8.9E-09 55.0 5.4 108 10-120 13-124 (233)
59 COG5238 RNA1 Ran GTPase-activa 97.3 8.8E-05 1.9E-09 61.4 0.7 196 15-213 29-282 (388)
60 COG5238 RNA1 Ran GTPase-activa 97.2 0.00018 3.8E-09 59.7 1.8 182 32-214 23-253 (388)
61 KOG1644 U2-associated snRNP A' 97.2 0.00069 1.5E-08 53.8 5.0 103 15-119 41-150 (233)
62 KOG4579 Leucine-rich repeat (L 97.1 3.4E-05 7.3E-10 57.4 -2.5 77 109-187 53-133 (177)
63 KOG2739 Leucine-rich acidic nu 97.1 0.00034 7.3E-09 57.6 2.8 102 15-118 42-152 (260)
64 KOG2123 Uncharacterized conser 96.6 9.4E-05 2E-09 61.4 -4.6 59 14-73 39-99 (388)
65 KOG4579 Leucine-rich repeat (L 96.5 0.0004 8.6E-09 51.8 -1.0 103 16-120 27-134 (177)
66 KOG2123 Uncharacterized conser 96.5 0.00017 3.7E-09 59.9 -3.4 98 15-115 18-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.5 0.002 4.3E-08 53.1 2.7 82 108-190 42-129 (260)
68 KOG1947 Leucine rich repeat pr 96.4 0.0032 7E-08 57.8 4.0 64 152-216 242-308 (482)
69 PF00560 LRR_1: Leucine Rich R 96.3 0.0017 3.8E-08 32.2 1.0 21 17-37 1-21 (22)
70 KOG3864 Uncharacterized conser 96.1 0.0025 5.3E-08 50.7 1.4 89 154-246 102-191 (221)
71 PF00560 LRR_1: Leucine Rich R 95.3 0.01 2.2E-07 29.4 1.1 15 133-147 3-17 (22)
72 PF13504 LRR_7: Leucine rich r 95.0 0.014 3E-07 26.9 1.2 17 16-32 1-17 (17)
73 KOG3864 Uncharacterized conser 94.4 0.0075 1.6E-07 48.0 -1.0 75 179-257 103-177 (221)
74 smart00367 LRR_CC Leucine-rich 93.8 0.061 1.3E-06 27.7 2.1 23 230-252 1-23 (26)
75 PF13306 LRR_5: Leucine rich r 91.3 1.2 2.6E-05 32.6 7.2 96 14-117 10-111 (129)
76 PF13306 LRR_5: Leucine rich r 91.3 1.3 2.8E-05 32.4 7.3 79 34-118 7-90 (129)
77 smart00370 LRR Leucine-rich re 91.1 0.2 4.2E-06 25.7 1.9 21 15-35 1-21 (26)
78 smart00369 LRR_TYP Leucine-ric 91.1 0.2 4.2E-06 25.7 1.9 21 15-35 1-21 (26)
79 PF13516 LRR_6: Leucine Rich r 83.6 0.31 6.8E-06 24.3 -0.1 14 177-190 2-15 (24)
80 KOG0473 Leucine-rich repeat pr 80.4 0.038 8.3E-07 45.2 -6.4 82 14-97 40-122 (326)
81 smart00364 LRR_BAC Leucine-ric 79.0 1.3 2.9E-05 22.8 1.2 18 16-33 2-19 (26)
82 KOG4308 LRR-containing protein 77.5 0.043 9.3E-07 50.5 -7.9 80 18-97 89-183 (478)
83 smart00365 LRR_SD22 Leucine-ri 76.5 2.2 4.8E-05 22.0 1.6 15 16-30 2-16 (26)
84 KOG0473 Leucine-rich repeat pr 70.8 0.13 2.9E-06 42.2 -5.7 90 30-121 32-123 (326)
85 smart00368 LRR_RI Leucine rich 66.1 4.8 0.0001 20.9 1.5 14 16-29 2-15 (28)
86 KOG3763 mRNA export factor TAP 47.0 15 0.00033 34.2 2.4 79 14-92 216-307 (585)
87 PF07725 LRR_3: Leucine Rich R 42.3 18 0.00039 17.3 1.2 18 17-34 1-18 (20)
88 PF05725 FNIP: FNIP Repeat; I 35.7 53 0.0011 19.0 2.8 10 201-210 32-41 (44)
89 KOG3763 mRNA export factor TAP 22.2 51 0.0011 30.9 1.5 62 131-192 219-285 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=6.2e-25 Score=219.21 Aligned_cols=146 Identities=45% Similarity=0.725 Sum_probs=130.5
Q ss_pred CCCCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccccccc
Q 039126 1 WHGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 1 ~~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
|++++++.+|..+.+.+|+.|+++++.+..+|.++..+++|+.|+++++.....+|.+..+++|++|++++|..+..+|.
T Consensus 596 ~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 596 WDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred ecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccch
Confidence 78899999999999999999999999999999999999999999999998788899999999999999999999999999
Q ss_pred chhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccc
Q 039126 81 SIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELP 146 (295)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 146 (295)
.+..+++|+.|++++|..++.+|....+++|+.|++++|..++.+|....+|+.|++.++.+..+|
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFP 741 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccc
Confidence 999999999999999999999998878899999999998877777766666666666666655444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1.8e-22 Score=200.08 Aligned_cols=221 Identities=20% Similarity=0.193 Sum_probs=111.3
Q ss_pred CCCceeEecCCCCcc-ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126 15 PKNLVSPEIPRNSIK-QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN 92 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 92 (295)
+++|++|++++|.+. .+|..++.+++|++|++++|.+.+..| .+.++++|++|++++|.....+|..+..+++|+.|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 344444444444443 344455555555555555555555555 355555555555555544445555555555555555
Q ss_pred cccCcCCceeCCcc-cCccccEEeccCCCCCcccCcCCC---CCceEEccCcccc-ccchhhhCCCCCcEEecCCCcCCc
Q 039126 93 LKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAIN-ELPSSIEYLSKLVILNLGNSSRLE 167 (295)
Q Consensus 93 l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~~ 167 (295)
+++|.....+|..+ .+++|++|++++|...+.+|..++ +|++|++++|.+. .+|..++.+++|+.|++++|...+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 55544333444333 255555555555554444444332 3445555555554 444555555555555555554444
Q ss_pred CcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCC
Q 039126 168 GLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINC 241 (295)
Q Consensus 168 ~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 241 (295)
.+|..+.++++|+.|++++|.+.+..|..+..+ ++|+.|++++|.....++... ..+++|+.|++++|
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l----~~~~~L~~L~Ls~n 366 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSL--PRLQVLQLWSNKFSGEIPKNL----GKHNNLTVLDLSTN 366 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcC--CCCCEEECcCCCCcCcCChHH----hCCCCCcEEECCCC
Confidence 455555555555555555555555555555554 555555555543322333211 33445555555444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2.3e-22 Score=199.40 Aligned_cols=198 Identities=21% Similarity=0.230 Sum_probs=123.3
Q ss_pred CCCCceeEecCCCCcc-ccchhh-cCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126 14 RPKNLVSPEIPRNSIK-QLWKVV-QRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVAR 91 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~-~l~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 91 (295)
.+++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|. ..+++|++|++++|.....+|..++.+++|++|
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 4777788888877776 566554 3777777777777776655553 345666677776665555666666777777777
Q ss_pred ccccCcCCceeCCcc-cCccccEEeccCCCCCcccCcCCC---CCceEEccCcccc-ccchhhhCCCCCcEEecCCCcCC
Q 039126 92 NLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAIN-ELPSSIEYLSKLVILNLGNSSRL 166 (295)
Q Consensus 92 ~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~ 166 (295)
++++|.....+|..+ .+++|++|++++|...+.+|..++ +|++|++++|.+. .+|..++.+++|++|++++|...
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 777665544555444 366666777766665555554433 4556666666665 55656666666666666666544
Q ss_pred cCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126 167 EGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS 214 (295)
Q Consensus 167 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 214 (295)
+.+|..++++++|++|++++|.+.+.+|..+..+ ++|++|++++|.
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~ 295 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL--QKLISLDLSDNS 295 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhc--cCcCEEECcCCe
Confidence 4555556666666666666665555555555555 555555555543
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=2e-17 Score=165.72 Aligned_cols=237 Identities=24% Similarity=0.361 Sum_probs=168.9
Q ss_pred CCcCCCCCCCCCceeEecCCCC-ccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccch--
Q 039126 6 FKSLSSIIRPKNLVSPEIPRNS-IKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSI-- 82 (295)
Q Consensus 6 ~~~~p~~~~~~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-- 82 (295)
+..+|....+++|+.|++++|. +..+|..++.+++|+.|++++|...+.+|....+++|++|++++|..++.+|...
T Consensus 647 l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~n 726 (1153)
T PLN03210 647 LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTN 726 (1153)
T ss_pred cCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCC
Confidence 4556666667888888888764 5577878888888888888888767777754467777777777765443332110
Q ss_pred ------------------------------------------------hcccCCcEEccccCcCCceeCCcc-cCccccE
Q 039126 83 ------------------------------------------------RHLNKFVARNLKHCRSLTNLSTSI-HLESLKK 113 (295)
Q Consensus 83 ------------------------------------------------~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~ 113 (295)
...++|+.|++++|..+..+|..+ .+++|+.
T Consensus 727 L~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 727 ISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred cCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 011345566666666666666655 3888999
Q ss_pred EeccCCCCCcccCcC--CCCCceEEccCcc-ccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCC
Q 039126 114 LILSGCSNLMSFPEL--FYNIKELSLDGTA-INELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL 190 (295)
Q Consensus 114 L~l~~~~~~~~~~~~--~~~L~~L~l~~~~-i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 190 (295)
|++++|..++.+|.. +.+|++|++++|. +..+|.. .++|+.|++++| .+..+|.++..+++|+.|++++|+.+
T Consensus 807 L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 807 LEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred EECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCc
Confidence 999998878888865 4578899999874 4566542 467899999987 57788988999999999999999888
Q ss_pred CCchhhhhccCCCCcceeecccccccccccccch-----h----hhccCCcccEEeecCCCCChhhh
Q 039126 191 ESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSI-----I----FTKISRNTQSFDFINCFKLHQNV 248 (295)
Q Consensus 191 ~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~----~~~~~~~L~~L~l~~c~~l~~~~ 248 (295)
..+|..+..+ ++|+.+++++|..++.++.... . ....++....+.+.+|.++...+
T Consensus 883 ~~l~~~~~~L--~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a 947 (1153)
T PLN03210 883 QRVSLNISKL--KHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA 947 (1153)
T ss_pred CccCcccccc--cCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchh
Confidence 8888887777 8999999999988876543110 0 00123445667888998887654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=8.1e-20 Score=163.07 Aligned_cols=227 Identities=25% Similarity=0.313 Sum_probs=134.4
Q ss_pred cCC-CCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC--CCCCCCCcEeeccccccccccccchhc
Q 039126 8 SLS-SIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS--LSLATNLESLNFQRYTSLLETHSSIRH 84 (295)
Q Consensus 8 ~~p-~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~ 84 (295)
.+| .+|++..|..|||++|++.++|..+..-+++-+|+|++|.+ ..+|. +-++..|-+||+|+ +.++.+|+.++.
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RR 171 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRR 171 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhcccc-chhhhcCHHHHH
Confidence 355 45678888999999999888888888888888899988874 56663 67788888888888 577888888888
Q ss_pred ccCCcEEccccCcC----CceeCCcccCccccEEeccCCCC------------------------CcccCcC---CCCCc
Q 039126 85 LNKFVARNLKHCRS----LTNLSTSIHLESLKKLILSGCSN------------------------LMSFPEL---FYNIK 133 (295)
Q Consensus 85 l~~L~~L~l~~~~~----l~~l~~~~~~~~L~~L~l~~~~~------------------------~~~~~~~---~~~L~ 133 (295)
+..|+.|.+++|+. +..+|. +.+|+.|++++++. +..+|.. +.+|+
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPs---mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~Lr 248 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPS---MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLR 248 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCcc---chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhh
Confidence 88888888887642 122221 22333333333221 2222221 11233
Q ss_pred eEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCC------------------------
Q 039126 134 ELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSN------------------------ 189 (295)
Q Consensus 134 ~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~------------------------ 189 (295)
.|++++|.|+++.-..+...+|+.|++++| .+..+|.+++++++|+.|.+.+|..
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 344444444333322333333333333333 3344455555555555554444432
Q ss_pred CCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhh
Q 039126 190 LESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQN 247 (295)
Q Consensus 190 ~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 247 (295)
++-+|+++..+ ..|+.|.++. +.+-.+|..+ ..++.|+.|++...|+|..-
T Consensus 328 LElVPEglcRC--~kL~kL~L~~-NrLiTLPeaI----HlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 328 LELVPEGLCRC--VKLQKLKLDH-NRLITLPEAI----HLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cccCchhhhhh--HHHHHhcccc-cceeechhhh----hhcCCcceeeccCCcCccCC
Confidence 33444444433 6666666663 4455566644 56788888888888887754
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=8.6e-20 Score=161.52 Aligned_cols=220 Identities=22% Similarity=0.210 Sum_probs=137.4
Q ss_pred CCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCc-CCCCCCCCCCcEeecccccccccccc-chhcccCCcEE
Q 039126 15 PKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTE-IPSLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVAR 91 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L 91 (295)
+.+|..|.|++|+++.+| ..++++++|+.|+|..|.+... .-.|..++.|+.|.+.+| .+..+.+ .|..|.++++|
T Consensus 196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l 274 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHL 274 (873)
T ss_pred cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeeccccee
Confidence 344555555555555554 2334455555555555554222 224555555555555553 3334433 35667777777
Q ss_pred ccccCcCCceeCCcc--cCccccEEeccCCCCCcccCcCC---CCCceEEccCccccccch-hhhCCCCCcEEecCCCcC
Q 039126 92 NLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINELPS-SIEYLSKLVILNLGNSSR 165 (295)
Q Consensus 92 ~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~~ 165 (295)
+++.| .+..+..+. ++..|+.|++++|.+..--++.+ ++|+.|++++|.++++++ .+..+..|+.|.+++|..
T Consensus 275 ~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 275 NLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred ecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence 77763 444444332 47888888888876554444433 477888888888887754 466677788888888743
Q ss_pred CcCcccccCCCCCCCeeeccCCCCCC---CchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126 166 LEGLPSKICKLKSLQHLNLSCCSNLE---SFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 166 ~~~~p~~l~~l~~L~~L~l~~~~~~~---~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
.......+.++++|++||+..|.+.. +....+.++ ++|++|++.|+ +++.++...+ ..++.|++|++.+..
T Consensus 354 ~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl--~~LrkL~l~gN-qlk~I~krAf---sgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 354 DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL--PSLRKLRLTGN-QLKSIPKRAF---SGLEALEHLDLGDNA 427 (873)
T ss_pred HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc--hhhhheeecCc-eeeecchhhh---ccCcccceecCCCCc
Confidence 33233456678888888888876543 333445556 88888888884 5788876432 578888888887764
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=2.1e-19 Score=160.54 Aligned_cols=211 Identities=22% Similarity=0.326 Sum_probs=138.6
Q ss_pred CCCcCCCCC--CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCC-------------------------cCC-
Q 039126 5 PFKSLSSII--RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLT-------------------------EIP- 56 (295)
Q Consensus 5 ~~~~~p~~~--~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~-------------------------~~~- 56 (295)
.++++|+.. ++..|-.|||++|.+..+|+.++++.+|+.|+|++|.+.- .+|
T Consensus 137 ~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 137 NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence 455566432 4666666666666666666667777777777777765311 122
Q ss_pred CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCccc-CccccEEeccCCCCCcccCcCCC---CC
Q 039126 57 SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPELFY---NI 132 (295)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~---~L 132 (295)
++..+.+|..+|+|. +.+..+|+.+..+++|+.|++++ +.++.+..... +.+|+.|+++.|+ +..+|..+. .|
T Consensus 217 sld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL 293 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKL 293 (1255)
T ss_pred chhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHH
Confidence 233344444444444 34445555555555666666665 34444444333 5566666666654 445565544 34
Q ss_pred ceEEccCcccc--ccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeec
Q 039126 133 KELSLDGTAIN--ELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEA 210 (295)
Q Consensus 133 ~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l 210 (295)
+.|.+.+|.++ .+|+.++.+..|+.+...+| .+.-+|+.+++|.+|+.|.+++|.. -++|+.+.-+ +.|+.||+
T Consensus 294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrL-iTLPeaIHlL--~~l~vLDl 369 (1255)
T KOG0444|consen 294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRL-ITLPEAIHLL--PDLKVLDL 369 (1255)
T ss_pred HHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccce-eechhhhhhc--CCcceeec
Confidence 46666677655 77777888888888877766 6788899999999999999999664 5699999888 99999999
Q ss_pred cccccccccccc
Q 039126 211 HWCSSLETLSGL 222 (295)
Q Consensus 211 ~~~~~l~~~~~~ 222 (295)
+.++++..-|..
T Consensus 370 reNpnLVMPPKP 381 (1255)
T KOG0444|consen 370 RENPNLVMPPKP 381 (1255)
T ss_pred cCCcCccCCCCc
Confidence 999998876653
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=1.1e-17 Score=148.29 Aligned_cols=233 Identities=20% Similarity=0.208 Sum_probs=123.9
Q ss_pred CCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc-cchhcccCCcE
Q 039126 14 RPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH-SSIRHLNKFVA 90 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~ 90 (295)
.++.|++|||+.|.|..++ ..+..=.++++|+|++|.+..... .|..+..|..|.|++| .++.+| ..|.++++|+.
T Consensus 147 ~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 147 ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES 225 (873)
T ss_pred hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhh
Confidence 3666777788877777776 345555677777777777543222 4667777777777773 455555 34666777777
Q ss_pred EccccCc-----------------------CCceeCCcc--cCccccEEeccCCCCCcccCc----CCCCCceEEccCcc
Q 039126 91 RNLKHCR-----------------------SLTNLSTSI--HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTA 141 (295)
Q Consensus 91 L~l~~~~-----------------------~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~ 141 (295)
|++..|. .+..+.++. ++..++.|+++.|+. ..+.. .+..|++|++++|.
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l-~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL-QAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh-hhhhcccccccchhhhhccchhh
Confidence 7776642 122222221 144444455544432 12211 12234455666666
Q ss_pred cccc-chhhhCCCCCcEEecCCCcCCcCcc-cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccc
Q 039126 142 INEL-PSSIEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETL 219 (295)
Q Consensus 142 i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~ 219 (295)
|..+ ++....+++|+.|+++.|. +..++ ..+..+..|++|.+++|.+..-....+.++ ++|+.||++.+..-..+
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l--ssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL--SSLHKLDLRSNELSWCI 381 (873)
T ss_pred hheeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh--hhhhhhcCcCCeEEEEE
Confidence 6544 2233445666666666653 33333 345556666666666655433333344445 77777777653321111
Q ss_pred cccchhhhccCCcccEEeecCCCCChhhhHhhHH
Q 039126 220 SGLSIIFTKISRNTQSFDFINCFKLHQNVVQGII 253 (295)
Q Consensus 220 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 253 (295)
......+ ..+++|+.|++.+. +++.++.+.+.
T Consensus 382 EDaa~~f-~gl~~LrkL~l~gN-qlk~I~krAfs 413 (873)
T KOG4194|consen 382 EDAAVAF-NGLPSLRKLRLTGN-QLKSIPKRAFS 413 (873)
T ss_pred ecchhhh-ccchhhhheeecCc-eeeecchhhhc
Confidence 1111122 35777777777664 45554444443
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=9e-18 Score=155.63 Aligned_cols=269 Identities=23% Similarity=0.292 Sum_probs=188.5
Q ss_pred CCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcE
Q 039126 12 IIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVA 90 (295)
Q Consensus 12 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 90 (295)
.+...+++++|+++++++.+|..++.|.+|+.+++.+|.+ ..+| .+.....|+.|...+ +.++.+|.....++.|+.
T Consensus 237 ~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 237 HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRT 314 (1081)
T ss_pred ccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeee
Confidence 3457788999999999999998889999999999999876 4555 466677777777766 456666766667777777
Q ss_pred EccccCcCCceeCCcc---------------------------cCccccEEeccCCCCCcc-cC--cCCCCCceEEccCc
Q 039126 91 RNLKHCRSLTNLSTSI---------------------------HLESLKKLILSGCSNLMS-FP--ELFYNIKELSLDGT 140 (295)
Q Consensus 91 L~l~~~~~l~~l~~~~---------------------------~~~~L~~L~l~~~~~~~~-~~--~~~~~L~~L~l~~~ 140 (295)
|++.. ..+..+|... ..+.|+.|++.+|..... +| ..+.+|+.|++++|
T Consensus 315 LdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 315 LDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred eeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 77766 3444444321 134566677777654443 33 24558999999999
Q ss_pred cccccchh-hhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccc
Q 039126 141 AINELPSS-IEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETL 219 (295)
Q Consensus 141 ~i~~~~~~-~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~ 219 (295)
.+..+|.. +.++..|++|++++| +++.+|..+..++.|++|...+|.+ ..+| .+..+ +.|+.+|++ |++++.+
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l-~~fP-e~~~l--~qL~~lDlS-~N~L~~~ 467 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQL-LSFP-ELAQL--PQLKVLDLS-CNNLSEV 467 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCce-eech-hhhhc--CcceEEecc-cchhhhh
Confidence 99999875 578899999999998 6899999999999999999998664 5677 77777 999999999 5678877
Q ss_pred cccchhhhccC-CcccEEeecCCCCChhh--hHhhHHHHHHHHccCCCCCCCCCcEEEEEEeeecccCcccccccCC
Q 039126 220 SGLSIIFTKIS-RNTQSFDFINCFKLHQN--VVQGIINNAQLKLQLPTSNLKTQAIIIIVLKYNNSAQSNVNRDVRE 293 (295)
Q Consensus 220 ~~~~~~~~~~~-~~L~~L~l~~c~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 293 (295)
.... ... ++|++|++++.+.+.-. .++..-...+.++..-.....+...-+|.......++....-+++.
T Consensus 468 ~l~~----~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~~~d~~~n~~~~t~Gv~~~~gqrnk~c~~~ 540 (1081)
T KOG0618|consen 468 TLPE----ALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNNTPDGNVNAFLWTYGVAGVSGQRNKVCSRA 540 (1081)
T ss_pred hhhh----hCCCcccceeeccCCcccccchhhhHHhhhhhheecccCCCCccccceeheeeccchhcccccchhhhh
Confidence 6643 234 89999999999864322 1111111112222211223334445666667777777666666554
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.3e-18 Score=130.78 Aligned_cols=158 Identities=22% Similarity=0.321 Sum_probs=118.5
Q ss_pred CCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchh
Q 039126 5 PFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIR 83 (295)
Q Consensus 5 ~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (295)
++.++|..|++.+.++|.+++|+++.+|+.+..+.+|+.|++.+|++ +++| +++.+++|+.|++.- +.+..+|.+++
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgm-nrl~~lprgfg 99 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGM-NRLNILPRGFG 99 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecch-hhhhcCccccC
Confidence 56678889999999999999999999999999999999999999985 5666 799999999999987 67888999999
Q ss_pred cccCCcEEccccCcCCc-eeCCccc-CccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecC
Q 039126 84 HLNKFVARNLKHCRSLT-NLSTSIH-LESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLG 161 (295)
Q Consensus 84 ~l~~L~~L~l~~~~~l~-~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~ 161 (295)
.++.|++||+.+|..-+ .+|..++ +..|+.|+++.|.+ .-+| +.++.+++|+.|.+.
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp--------------------~dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILP--------------------PDVGKLTNLQILSLR 158 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCC--------------------hhhhhhcceeEEeec
Confidence 99999999999864333 4666554 77888888888753 2334 444445555555555
Q ss_pred CCcCCcCcccccCCCCCCCeeeccC
Q 039126 162 NSSRLEGLPSKICKLKSLQHLNLSC 186 (295)
Q Consensus 162 ~~~~~~~~p~~l~~l~~L~~L~l~~ 186 (295)
.| .+-.+|.+++.+..|+.|++++
T Consensus 159 dn-dll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 159 DN-DLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred cC-chhhCcHHHHHHHHHHHHhccc
Confidence 44 2333444555555555555555
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=1.6e-15 Score=143.93 Aligned_cols=216 Identities=19% Similarity=0.284 Sum_probs=121.6
Q ss_pred CCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeeccccccccccccch
Q 039126 4 CPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHSSI 82 (295)
Q Consensus 4 ~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (295)
..++++|... .++++.|++++|.++.+|..+. .+|+.|++++|.+. .+|. + ...|+.|++++|. +..+|..+
T Consensus 188 ~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~-L~~LP~~l 260 (754)
T PRK15370 188 LGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSINR-ITELPERL 260 (754)
T ss_pred CCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcCCc-cCcCChhH
Confidence 4556666532 4578888888888888876553 47888888887754 4552 2 2356777777643 44555443
Q ss_pred hcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCC----------------------CCCceEEccCc
Q 039126 83 RHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELF----------------------YNIKELSLDGT 140 (295)
Q Consensus 83 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------------~~L~~L~l~~~ 140 (295)
. .+|+.|++++| .++.+|..+ ..+|+.|++++|++ ..+|..+ .+|+.|++++|
T Consensus 261 ~--s~L~~L~Ls~N-~L~~LP~~l-~~sL~~L~Ls~N~L-t~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N 335 (754)
T PRK15370 261 P--SALQSLDLFHN-KISCLPENL-PEELRYLSVYDNSI-RTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN 335 (754)
T ss_pred h--CCCCEEECcCC-ccCcccccc-CCCCcEEECCCCcc-ccCcccchhhHHHHHhcCCccccCCccccccceeccccCC
Confidence 2 35666666653 444555432 24566666666542 2333322 24555555555
Q ss_pred cccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccccccccc
Q 039126 141 AINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLS 220 (295)
Q Consensus 141 ~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 220 (295)
.++.+|..+ +++|+.|++++| .+..+|..+ .+.|+.|++++|.+. .+|..+ +.+|+.|+++++ .++.+|
T Consensus 336 ~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l----~~sL~~LdLs~N-~L~~LP 404 (754)
T PRK15370 336 ALTSLPASL--PPELQVLDVSKN-QITVLPETL--PPTITTLDVSRNALT-NLPENL----PAALQIMQASRN-NLVRLP 404 (754)
T ss_pred ccccCChhh--cCcccEEECCCC-CCCcCChhh--cCCcCEEECCCCcCC-CCCHhH----HHHHHHHhhccC-CcccCc
Confidence 555555433 245666666665 344455443 245666666665543 445442 245666666664 355555
Q ss_pred ccchhhhccCCcccEEeecCCC
Q 039126 221 GLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 221 ~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
..........+++..+++.+.+
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCC
Confidence 4333333445677777777765
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=3.4e-15 Score=141.67 Aligned_cols=204 Identities=18% Similarity=0.263 Sum_probs=145.6
Q ss_pred CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL 93 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 93 (295)
..+...|+++++.++.+|..+. ..|+.|++++|.+. .+|. + .++|++|++++| .++.+|..+ ..+|+.|++
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N-~LtsLP~~l--~~~L~~L~L 248 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENL--QGNIKTLYANSN-QLTSIPATL--PDTIQEMEL 248 (754)
T ss_pred ccCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhh--ccCCCEEECCCC-ccccCChhh--hccccEEEC
Confidence 3567899999999999987664 57999999999865 5663 3 358999999985 567787654 357999999
Q ss_pred ccCcCCceeCCcccCccccEEeccCCCCCcccCcCCC-CCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccc
Q 039126 94 KHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFY-NIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSK 172 (295)
Q Consensus 94 ~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 172 (295)
++|. +..+|..+ ..+|+.|++++|++ ..+|..++ +|+.|++++|.++.+|..+. ++|+.|++++| .+..+|..
T Consensus 249 s~N~-L~~LP~~l-~s~L~~L~Ls~N~L-~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~ 322 (754)
T PRK15370 249 SINR-ITELPERL-PSALQSLDLFHNKI-SCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPET 322 (754)
T ss_pred cCCc-cCcCChhH-hCCCCEEECcCCcc-CccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcc
Confidence 9964 55777544 46899999998864 46776554 89999999999998876542 46777888876 34556644
Q ss_pred cCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhh
Q 039126 173 ICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQN 247 (295)
Q Consensus 173 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 247 (295)
+ .++|+.|++++|.+. .+|.. +|++|+.|++++| .++.+|. ...++|+.|++++| +++..
T Consensus 323 l--~~sL~~L~Ls~N~Lt-~LP~~----l~~sL~~L~Ls~N-~L~~LP~------~lp~~L~~LdLs~N-~Lt~L 382 (754)
T PRK15370 323 L--PPGLKTLEAGENALT-SLPAS----LPPELQVLDVSKN-QITVLPE------TLPPTITTLDVSRN-ALTNL 382 (754)
T ss_pred c--cccceeccccCCccc-cCChh----hcCcccEEECCCC-CCCcCCh------hhcCCcCEEECCCC-cCCCC
Confidence 3 356777777776643 35554 3467777777775 3555554 23457777777776 34443
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=2.6e-18 Score=146.13 Aligned_cols=212 Identities=21% Similarity=0.222 Sum_probs=131.3
Q ss_pred CceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccC
Q 039126 17 NLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHC 96 (295)
Q Consensus 17 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 96 (295)
.+..++.++|++.++|+.+..+..|+.++.+.|.+....++++.+-.+..++..+ +.+.++|..+.++.++..+++.+
T Consensus 92 ~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~- 169 (565)
T KOG0472|consen 92 ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEG- 169 (565)
T ss_pred HHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccc-
Confidence 3333444444444444444444444444444444332223444444444444444 34455565666666666666666
Q ss_pred cCCceeCCcc-cCccccEEeccCCCCCcccCcCCCCCc---eEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccc
Q 039126 97 RSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFYNIK---ELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSK 172 (295)
Q Consensus 97 ~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~L~---~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 172 (295)
..+..+|... .++.|++++...| .++.+|+.++.|+ .|+++.|.+..+| +|..+..|.+++++.| .+.-+|.+
T Consensus 170 n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae 246 (565)
T KOG0472|consen 170 NKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAE 246 (565)
T ss_pred cchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHH
Confidence 3444444443 4677777777765 4677777766544 5577778887777 6777777888887776 56777766
Q ss_pred cC-CCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126 173 IC-KLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 173 l~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
.+ +++++.+||+.+|. ..+.|.++-.+ .+|++||++++ .++.+|.+. +.+ .|+.|-+.+.|
T Consensus 247 ~~~~L~~l~vLDLRdNk-lke~Pde~clL--rsL~rLDlSNN-~is~Lp~sL----gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNK-LKEVPDEICLL--RSLERLDLSNN-DISSLPYSL----GNL-HLKFLALEGNP 308 (565)
T ss_pred Hhcccccceeeeccccc-cccCchHHHHh--hhhhhhcccCC-ccccCCccc----ccc-eeeehhhcCCc
Confidence 65 78888888888854 56778877766 88888888874 567777654 455 67777777765
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.59 E-value=4.8e-18 Score=144.53 Aligned_cols=215 Identities=23% Similarity=0.302 Sum_probs=165.4
Q ss_pred CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126 14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN 92 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 92 (295)
++..+.+|++.+|++.++|.+++.+..++.++.+.|.+. .+| ++..+..++.++.++ +....+++.++.+-.+..++
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhh
Confidence 466677777777777777777777777888887777743 444 677777777888777 45566666777777777777
Q ss_pred cccCcCCceeCCccc-CccccEEeccCCCCCcccCcC---CCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcC
Q 039126 93 LKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEG 168 (295)
Q Consensus 93 l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~ 168 (295)
..+ ..+..+|.+++ +.++..+++.+|.. ...|.. +..|++++.-.|.+..+|+.++.+.+|..|++.+| .+..
T Consensus 144 ~~~-N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N-ki~~ 220 (565)
T KOG0472|consen 144 ATN-NQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN-KIRF 220 (565)
T ss_pred ccc-cccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc-cccc
Confidence 766 45666666653 77777788888653 344432 34677888888889999999999999999999998 6888
Q ss_pred cccccCCCCCCCeeeccCCCCCCCchhhhh-ccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126 169 LPSKICKLKSLQHLNLSCCSNLESFPNELR-NLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 169 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
+| +|.+|..|++++++.|. .+.+|.+.. .+ +++..||+++ ++++++|.+. ..+.+|.+|++++.+
T Consensus 221 lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L--~~l~vLDLRd-Nklke~Pde~----clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHL--NSLLVLDLRD-NKLKEVPDEI----CLLRSLERLDLSNND 286 (565)
T ss_pred CC-CCCccHHHHHHHhcccH-HHhhHHHHhccc--ccceeeeccc-cccccCchHH----HHhhhhhhhcccCCc
Confidence 88 69999999999999865 567777765 66 9999999998 4689999865 578889999998863
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=4.3e-14 Score=133.82 Aligned_cols=214 Identities=19% Similarity=0.210 Sum_probs=116.5
Q ss_pred CCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccc----------
Q 039126 4 CPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYT---------- 73 (295)
Q Consensus 4 ~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~---------- 73 (295)
..++++|..+ .++++.|++++|+++.+|. ..++|++|++++|.+. .+|.+ .++|++|++++|.
T Consensus 211 ~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~ 283 (788)
T PRK15387 211 SGLTTLPDCL-PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNPLTHLPALPSG 283 (788)
T ss_pred CCCCcCCcch-hcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccC-cccCc--ccccceeeccCCchhhhhhchhh
Confidence 4566777644 3478888888888887774 3567888888888654 44432 2345555555532
Q ss_pred ---------cccccccchhcccCCcEEccccCcCCceeCCcc------------------cCccccEEeccCCCCCcccC
Q 039126 74 ---------SLLETHSSIRHLNKFVARNLKHCRSLTNLSTSI------------------HLESLKKLILSGCSNLMSFP 126 (295)
Q Consensus 74 ---------~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~------------------~~~~L~~L~l~~~~~~~~~~ 126 (295)
.+..+|. .+++|+.|++++| .++.+|... ...+|+.|++++|+ +..+|
T Consensus 284 L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~-Ls~LP 358 (788)
T PRK15387 284 LCKLWIFGNQLTSLPV---LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQ-LASLP 358 (788)
T ss_pred cCEEECcCCccccccc---cccccceeECCCC-ccccCCCCcccccccccccCccccccccccccceEecCCCc-cCCCC
Confidence 2222222 1245666666664 333333210 01234444444432 22333
Q ss_pred cCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcc
Q 039126 127 ELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLY 206 (295)
Q Consensus 127 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~ 206 (295)
....+|+.|++++|.++.+|.. +.+|+.|++++| .+..+|.. .++|+.|++++|.+. .+|.. |.+|+
T Consensus 359 ~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N~Ls-sIP~l-----~~~L~ 425 (788)
T PRK15387 359 TLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVL---PSELKELMVSGNRLT-SLPML-----PSGLL 425 (788)
T ss_pred CCCcccceehhhccccccCccc---ccccceEEecCC-cccCCCCc---ccCCCEEEccCCcCC-CCCcc-----hhhhh
Confidence 3333444444444444443321 235666666665 34445532 345677777776543 35532 25677
Q ss_pred eeecccccccccccccchhhhccCCcccEEeecCCCCChhhh
Q 039126 207 DIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNV 248 (295)
Q Consensus 207 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 248 (295)
.|+++++ .++.+|..+ ..+++|+.|++++++ +....
T Consensus 426 ~L~Ls~N-qLt~LP~sl----~~L~~L~~LdLs~N~-Ls~~~ 461 (788)
T PRK15387 426 SLSVYRN-QLTRLPESL----IHLSSETTVNLEGNP-LSERT 461 (788)
T ss_pred hhhhccC-cccccChHH----hhccCCCeEECCCCC-CCchH
Confidence 7777764 467777643 578899999999985 44443
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=7.3e-16 Score=143.16 Aligned_cols=204 Identities=23% Similarity=0.281 Sum_probs=158.9
Q ss_pred CCCcCCCCC-CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccch-
Q 039126 5 PFKSLSSII-RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSI- 82 (295)
Q Consensus 5 ~~~~~p~~~-~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~- 82 (295)
.+..+|++. .+.+|+.++..+|++..+|..+.....|+.|++..|.+....|....++.|++|++..| .+..+|+.+
T Consensus 252 ~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l 330 (1081)
T KOG0618|consen 252 NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFL 330 (1081)
T ss_pred hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc-cccccchHHH
Confidence 355678766 59999999999999999999999999999999999986444446777999999999985 444444321
Q ss_pred -------------------------hcccCCcEEccccCcCCc-eeCCcccCccccEEeccCCCCCcccCcC----CCCC
Q 039126 83 -------------------------RHLNKFVARNLKHCRSLT-NLSTSIHLESLKKLILSGCSNLMSFPEL----FYNI 132 (295)
Q Consensus 83 -------------------------~~l~~L~~L~l~~~~~l~-~l~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~L 132 (295)
..++.|+.|.+.+|..-. .+|...+.+.|+.|++++|. ++++|.. +..|
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~L 409 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEEL 409 (1081)
T ss_pred hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHh
Confidence 122335556666643322 24555568999999999985 6677763 4467
Q ss_pred ceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCC-CCcceeecc
Q 039126 133 KELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFP-CDLYDIEAH 211 (295)
Q Consensus 133 ~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-~~L~~L~l~ 211 (295)
++|++++|.++.+|..+..+..|+.|...+| .+..+| ++..++.|+.+|++.|.+........ .| +.|++||++
T Consensus 410 eeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~---~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 410 EELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEA---LPSPNLKYLDLS 484 (1081)
T ss_pred HHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccchhhhhhhhhh---CCCcccceeecc
Confidence 8999999999999999999999999999987 678898 79999999999999998765332222 44 999999999
Q ss_pred cccc
Q 039126 212 WCSS 215 (295)
Q Consensus 212 ~~~~ 215 (295)
|+..
T Consensus 485 GN~~ 488 (1081)
T KOG0618|consen 485 GNTR 488 (1081)
T ss_pred CCcc
Confidence 9765
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=1.2e-14 Score=126.50 Aligned_cols=232 Identities=17% Similarity=0.162 Sum_probs=159.5
Q ss_pred CCCceeEecCCCCcc-----ccchhhcCCCCCcEEecCCCCCCC--c----CC-CCCCCCCCcEeeccccccccccccch
Q 039126 15 PKNLVSPEIPRNSIK-----QLWKVVQRLVNLKSINLNHSEHLT--E----IP-SLSLATNLESLNFQRYTSLLETHSSI 82 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~L~~~~~~~--~----~~-~~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (295)
..+++.++++++.++ .++..+...+.|++++++++.+.. . ++ .+..+++|++|++++|......+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 667999999999884 356677888889999999987642 1 11 35678899999999987665555555
Q ss_pred hcccC---CcEEccccCcCCce----eCCcc-cC-ccccEEeccCCCCCcc----cC---cCCCCCceEEccCcccc---
Q 039126 83 RHLNK---FVARNLKHCRSLTN----LSTSI-HL-ESLKKLILSGCSNLMS----FP---ELFYNIKELSLDGTAIN--- 143 (295)
Q Consensus 83 ~~l~~---L~~L~l~~~~~l~~----l~~~~-~~-~~L~~L~l~~~~~~~~----~~---~~~~~L~~L~l~~~~i~--- 143 (295)
..+.+ |++|++++|..-.. +.... .+ ++|+.|++++|.+.+. ++ ....+|++|++++|.++
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 55555 99999998753311 11111 24 7899999999986632 22 23347999999999887
Q ss_pred --ccchhhhCCCCCcEEecCCCcCCc----CcccccCCCCCCCeeeccCCCCCCCchhhhhccC---CCCcceeeccccc
Q 039126 144 --ELPSSIEYLSKLVILNLGNSSRLE----GLPSKICKLKSLQHLNLSCCSNLESFPNELRNLF---PCDLYDIEAHWCS 214 (295)
Q Consensus 144 --~~~~~~~~~~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~---~~~L~~L~l~~~~ 214 (295)
.++..+...++|++|++++|.... .++..+..+++|++|++++|.+.+..+..+...+ .+.|++|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 234445566799999999985432 2444567889999999999987664444433322 2799999999985
Q ss_pred ccccccc-cchhhhccCCcccEEeecCCCCChhhh
Q 039126 215 SLETLSG-LSIIFTKISRNTQSFDFINCFKLHQNV 248 (295)
Q Consensus 215 ~l~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~ 248 (295)
+++... ........+++|++++++++. +....
T Consensus 262 -i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~ 294 (319)
T cd00116 262 -ITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEG 294 (319)
T ss_pred -CCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHH
Confidence 432111 111122456899999999974 44443
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.8e-15 Score=115.14 Aligned_cols=187 Identities=25% Similarity=0.294 Sum_probs=133.9
Q ss_pred hcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCccc-CccccE
Q 039126 35 VQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIH-LESLKK 113 (295)
Q Consensus 35 ~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~~~L~~ 113 (295)
+-.+.+++.|.+++|.+....|.+..+++|++|++.+ +.++.+|..+..+++|+.|++.- ..+..+|.+++ ++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhh
Confidence 3456667777788887665556777788888888776 56777777777777777777764 45555666554 566666
Q ss_pred EeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCc
Q 039126 114 LILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESF 193 (295)
Q Consensus 114 L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~ 193 (295)
|++.+|+... ..+|..|..++.|..|.++.| -..-+|..++++.+|+.|.+.+|... ++
T Consensus 107 ldltynnl~e-------------------~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll-~l 165 (264)
T KOG0617|consen 107 LDLTYNNLNE-------------------NSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLL-SL 165 (264)
T ss_pred hhcccccccc-------------------ccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchh-hC
Confidence 6665553221 156777778888999999988 46778889999999999999998754 69
Q ss_pred hhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhhh
Q 039126 194 PNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNV 248 (295)
Q Consensus 194 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 248 (295)
|..++.+ +.|+.|.|.+. .++.+|.+... .....+-+.+.+.+.|-...++
T Consensus 166 pkeig~l--t~lrelhiqgn-rl~vlppel~~-l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 166 PKEIGDL--TRLRELHIQGN-RLTVLPPELAN-LDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred cHHHHHH--HHHHHHhcccc-eeeecChhhhh-hhhhhhHHHHhhhhCCCCChHH
Confidence 9999999 99999999985 57877764421 1234444566666666555543
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=7.4e-13 Score=125.49 Aligned_cols=175 Identities=21% Similarity=0.206 Sum_probs=114.7
Q ss_pred CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcccc
Q 039126 16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH 95 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 95 (295)
.+|+.|++++|+++.+|. ..++|+.|++++|.+. .+|.+ ...|+.|++++| .++.+|.. ..+|++|++++
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~-~Lp~l--p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~ 351 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLA-SLPAL--PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSD 351 (788)
T ss_pred hhcCEEECcCCccccccc---cccccceeECCCCccc-cCCCC--cccccccccccC-cccccccc---ccccceEecCC
Confidence 345555666666655553 2357888888888754 34432 234667777774 44555531 24788888887
Q ss_pred CcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCC
Q 039126 96 CRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICK 175 (295)
Q Consensus 96 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~ 175 (295)
..++.+|.. ..+|+.|++++|+ +..+|....+|+.|++++|.++.+|.. .++|+.|++++|. +..+|..
T Consensus 352 -N~Ls~LP~l--p~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l--- 420 (788)
T PRK15387 352 -NQLASLPTL--PSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLPML--- 420 (788)
T ss_pred -CccCCCCCC--Ccccceehhhccc-cccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCCcc---
Confidence 455666643 4577778888775 345776666788888888888777643 3567888888874 5556643
Q ss_pred CCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126 176 LKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS 214 (295)
Q Consensus 176 l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 214 (295)
..+|+.|++++|.+ ..+|..+..+ ++|+.|++++++
T Consensus 421 ~~~L~~L~Ls~NqL-t~LP~sl~~L--~~L~~LdLs~N~ 456 (788)
T PRK15387 421 PSGLLSLSVYRNQL-TRLPESLIHL--SSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhhhccCcc-cccChHHhhc--cCCCeEECCCCC
Confidence 34567788887664 4677777776 788888888754
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=7.3e-14 Score=121.59 Aligned_cols=225 Identities=16% Similarity=0.138 Sum_probs=151.6
Q ss_pred CCCCceeEecCCCCccc-------cchhhcCCCCCcEEecCCCCCCCcCC-CCCCC---CCCcEeecccccccc----cc
Q 039126 14 RPKNLVSPEIPRNSIKQ-------LWKVVQRLVNLKSINLNHSEHLTEIP-SLSLA---TNLESLNFQRYTSLL----ET 78 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~-------l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l---~~L~~L~l~~~~~~~----~~ 78 (295)
..++++.++++++.+.. ++..+..+++|+.|++++|.+....+ .+..+ ++|++|++++|+... .+
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 47779999999987662 34567789999999999998865444 33333 559999999986542 22
Q ss_pred ccchhcc-cCCcEEccccCcCCce----eCCcc-cCccccEEeccCCCCCcc----cCcCC---CCCceEEccCcccc--
Q 039126 79 HSSIRHL-NKFVARNLKHCRSLTN----LSTSI-HLESLKKLILSGCSNLMS----FPELF---YNIKELSLDGTAIN-- 143 (295)
Q Consensus 79 ~~~~~~l-~~L~~L~l~~~~~l~~----l~~~~-~~~~L~~L~l~~~~~~~~----~~~~~---~~L~~L~l~~~~i~-- 143 (295)
...+..+ ++|+.|++++|..... ++..+ .+..|+.|++++|.+.+. ++..+ .+|++|++++|.++
T Consensus 129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 3345666 8999999999764321 11112 267899999999876532 33333 48999999999886
Q ss_pred ---ccchhhhCCCCCcEEecCCCcCCcCcccccC-----CCCCCCeeeccCCCCCC----CchhhhhccCCCCcceeecc
Q 039126 144 ---ELPSSIEYLSKLVILNLGNSSRLEGLPSKIC-----KLKSLQHLNLSCCSNLE----SFPNELRNLFPCDLYDIEAH 211 (295)
Q Consensus 144 ---~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~-----~l~~L~~L~l~~~~~~~----~~~~~l~~~~~~~L~~L~l~ 211 (295)
.+...+..+++|++|++++|.........+. ..+.|+.|++++|.+.+ .+...+... ++|++++++
T Consensus 209 ~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~--~~L~~l~l~ 286 (319)
T cd00116 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK--ESLLELDLR 286 (319)
T ss_pred HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC--CCccEEECC
Confidence 3345567789999999999854321111121 24789999999998763 334445555 899999999
Q ss_pred cccccccccccc-hhhhccC-CcccEEeecCC
Q 039126 212 WCSSLETLSGLS-IIFTKIS-RNTQSFDFINC 241 (295)
Q Consensus 212 ~~~~l~~~~~~~-~~~~~~~-~~L~~L~l~~c 241 (295)
++. ++..+... ....... +.|+++++.+.
T Consensus 287 ~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 287 GNK-FGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CCC-CcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 864 45432211 1112233 67888877654
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=3.9e-13 Score=114.60 Aligned_cols=241 Identities=14% Similarity=0.101 Sum_probs=143.2
Q ss_pred CCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-
Q 039126 5 PFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS- 81 (295)
Q Consensus 5 ~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~- 81 (295)
.+.++|... .+.-..++|..|.|+.+| .+|+.+++||.|||+.|.+....| +|..++++..|-+.+++.++.+|..
T Consensus 57 GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 57 GLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 344444322 334456777778888776 445778888888888887666556 5777777777766666677766643
Q ss_pred hhcccCCcEEccccC-----------------------cCCceeCCcc--cCccccEEeccCCCCCc------------c
Q 039126 82 IRHLNKFVARNLKHC-----------------------RSLTNLSTSI--HLESLKKLILSGCSNLM------------S 124 (295)
Q Consensus 82 ~~~l~~L~~L~l~~~-----------------------~~l~~l~~~~--~~~~L~~L~l~~~~~~~------------~ 124 (295)
++++..++.|.+.-| +.+..++... .+.+++.+++..|...- .
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 555555555544332 2222222211 14555555555443110 0
Q ss_pred cCcCCCC-------------------------CceE----EccCccccccc-hhhhCCCCCcEEecCCCcCCcCcccccC
Q 039126 125 FPELFYN-------------------------IKEL----SLDGTAINELP-SSIEYLSKLVILNLGNSSRLEGLPSKIC 174 (295)
Q Consensus 125 ~~~~~~~-------------------------L~~L----~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~~~p~~l~ 174 (295)
.|-+++. ++.+ ....+....-| ..|..+++|+.|++++|.....-+.+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 1111110 0000 00011111112 2467889999999999865555677899
Q ss_pred CCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhhhHhhH
Q 039126 175 KLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGI 252 (295)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 252 (295)
++..++.|.+..|.+-..-...+.++ +.|+.|++.++. ++.+....+ +...+|..|.+-..|-.-+-....+
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~l--s~L~tL~L~~N~-it~~~~~aF---~~~~~l~~l~l~~Np~~CnC~l~wl 367 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGL--SGLKTLSLYDNQ-ITTVAPGAF---QTLFSLSTLNLLSNPFNCNCRLAWL 367 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhcc--ccceeeeecCCe-eEEEecccc---cccceeeeeehccCcccCccchHHH
Confidence 99999999999987655445566677 999999999954 666655332 6778888888876665544444333
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.08 E-value=1.3e-11 Score=105.50 Aligned_cols=224 Identities=15% Similarity=0.157 Sum_probs=147.8
Q ss_pred CCCCce--eEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccccchhcccCCc
Q 039126 14 RPKNLV--SPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHSSIRHLNKFV 89 (295)
Q Consensus 14 ~~~~L~--~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (295)
.+++.+ ..+-++..++++|..+. ..-..++|..|.+ ..+| .|+.+++|+.|||++|+....-|..+.+++++.
T Consensus 42 ~Cs~~~g~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I-~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~ 118 (498)
T KOG4237|consen 42 TCSDVEGGIVDCRGKGLTEVPANLP--PETVEIRLDQNQI-SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLL 118 (498)
T ss_pred ccCCCCCceEEccCCCcccCcccCC--CcceEEEeccCCc-ccCChhhccchhhhceecccccchhhcChHhhhhhHhhh
Confidence 355543 34445556777775332 2456788888875 4565 599999999999999776666778899999999
Q ss_pred EEccccCcCCceeCCccc--CccccEEeccCCCCCcc---cCcCCCCCceEEccCccccccch-hhhCCCCCcEEecCCC
Q 039126 90 ARNLKHCRSLTNLSTSIH--LESLKKLILSGCSNLMS---FPELFYNIKELSLDGTAINELPS-SIEYLSKLVILNLGNS 163 (295)
Q Consensus 90 ~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~~~~---~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~ 163 (295)
.|-+.++..++++|.+.+ +.+++.|.+..|+..-- .-..++++..|.+.+|.+..+++ .+..+..++.+.+..|
T Consensus 119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 998888889999998763 77777777776643211 11123333344444444443333 2233333333333322
Q ss_pred c-------------------------------------------------------------CCcCcc-cccCCCCCCCe
Q 039126 164 S-------------------------------------------------------------RLEGLP-SKICKLKSLQH 181 (295)
Q Consensus 164 ~-------------------------------------------------------------~~~~~p-~~l~~l~~L~~ 181 (295)
. .....| ..|.++++|++
T Consensus 199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRK 278 (498)
T ss_pred ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceE
Confidence 2 111122 23678899999
Q ss_pred eeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhh
Q 039126 182 LNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQN 247 (295)
Q Consensus 182 L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 247 (295)
|++++|.+.+.-+..+.+. .+++.|.+.++ +++.+...++ +.+..|+.|.+.+. +++..
T Consensus 279 lnlsnN~i~~i~~~aFe~~--a~l~eL~L~~N-~l~~v~~~~f---~~ls~L~tL~L~~N-~it~~ 337 (498)
T KOG4237|consen 279 LNLSNNKITRIEDGAFEGA--AELQELYLTRN-KLEFVSSGMF---QGLSGLKTLSLYDN-QITTV 337 (498)
T ss_pred eccCCCccchhhhhhhcch--hhhhhhhcCcc-hHHHHHHHhh---hccccceeeeecCC-eeEEE
Confidence 9999998888788888888 99999999884 5787776543 67888999998885 34443
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=1e-11 Score=110.59 Aligned_cols=201 Identities=20% Similarity=0.270 Sum_probs=139.7
Q ss_pred CCCCcCCCCC---CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccccccc
Q 039126 4 CPFKSLSSII---RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 4 ~~~~~~p~~~---~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
-.++.+|... .+..-...|++.|.+.++|..+..|..|..+.++.|.+....+.+..+..|+++|++. +.+..+|.
T Consensus 60 rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~ 138 (722)
T KOG0532|consen 60 RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPD 138 (722)
T ss_pred chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCCh
Confidence 3445555433 2444456788888888888888888888888888887554444688888888888888 56677777
Q ss_pred chhcccCCcEEccccCcCCceeCCccc-CccccEEeccCCCCCcccCcCCCC---CceEEccCccccccchhhhCCCCCc
Q 039126 81 SIRHLNKFVARNLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPELFYN---IKELSLDGTAINELPSSIEYLSKLV 156 (295)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~---L~~L~l~~~~i~~~~~~~~~~~~L~ 156 (295)
.+..++ |+.|-+++ ++++.+|..++ ...|..|+.+.|+ +..+|..++. |+.|.++.|++..+|.++..+ .|.
T Consensus 139 ~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi 214 (722)
T KOG0532|consen 139 GLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLI 214 (722)
T ss_pred hhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-cee
Confidence 777775 77777765 67777777765 6677788888775 4556665553 446777888888888887744 478
Q ss_pred EEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhh---hccCCCCcceeecccc
Q 039126 157 ILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNEL---RNLFPCDLYDIEAHWC 213 (295)
Q Consensus 157 ~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~~~~~~L~~L~l~~~ 213 (295)
.||++.| ++..+|..|.++..|++|-+.+|++ ..-|..+ +.. .=.++|++..|
T Consensus 215 ~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkV--HIFKyL~~qA~ 270 (722)
T KOG0532|consen 215 RLDFSCN-KISYLPVDFRKMRHLQVLQLENNPL-QSPPAQICEKGKV--HIFKYLSTQAC 270 (722)
T ss_pred eeecccC-ceeecchhhhhhhhheeeeeccCCC-CCChHHHHhccce--eeeeeecchhc
Confidence 8888866 6777888888888888888888764 3334332 112 44466666666
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=1.4e-10 Score=112.30 Aligned_cols=104 Identities=23% Similarity=0.340 Sum_probs=53.8
Q ss_pred CCCCceeEecCCCC--ccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCc
Q 039126 14 RPKNLVSPEIPRNS--IKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFV 89 (295)
Q Consensus 14 ~~~~L~~L~l~~~~--~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (295)
.+++|++|-+.+|. +..++ ..+..++.|++|||++|.-.+.+| .++.+-+|++|++++ +.+..+|..+++++.|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhh
Confidence 34455555555553 33333 224555555666665555455555 355555555555555 44555555555555555
Q ss_pred EEccccCcCCceeCCccc-CccccEEeccC
Q 039126 90 ARNLKHCRSLTNLSTSIH-LESLKKLILSG 118 (295)
Q Consensus 90 ~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~ 118 (295)
+|++..+..+...+.... +.+|++|.+..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeec
Confidence 555555444444433332 55555555543
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2e-11 Score=100.95 Aligned_cols=179 Identities=24% Similarity=0.310 Sum_probs=101.6
Q ss_pred CceeEecCCCCcc--ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc--chhcccCCcEE
Q 039126 17 NLVSPEIPRNSIK--QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS--SIRHLNKFVAR 91 (295)
Q Consensus 17 ~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L 91 (295)
+|+.|||++..|+ ++...+..|.+|+.|.+.++.+...+- .+.+-.+|+.|+++.|+.++.... .+..+..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4777788777666 344555777788888887777654444 466777777777777766665432 24566666666
Q ss_pred ccccCcCCceeCCcc---cCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcC
Q 039126 92 NLKHCRSLTNLSTSI---HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEG 168 (295)
Q Consensus 92 ~l~~~~~l~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~ 168 (295)
+++.|...++.-.-. --+.|+.|+++++...- ..+.+..-...+++|.+||++.|-.++.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----------------~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----------------QKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----------------hhhHHHHHHHhCCceeeeccccccccCc
Confidence 666654333221100 13445555555542110 0112222235677777777777655543
Q ss_pred -cccccCCCCCCCeeeccCCCCCCCchhhhhccC-CCCcceeeccccc
Q 039126 169 -LPSKICKLKSLQHLNLSCCSNLESFPNELRNLF-PCDLYDIEAHWCS 214 (295)
Q Consensus 169 -~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~~~L~~L~l~~~~ 214 (295)
...++.+++.|++|.++.|. +..|..+..+- .|+|.+|++.||-
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecccc
Confidence 22346677777777777774 33444332211 1777777777763
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=1.2e-09 Score=98.15 Aligned_cols=184 Identities=28% Similarity=0.424 Sum_probs=99.1
Q ss_pred EecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCC-CCcEeeccccccccccccchhcccCCcEEccccCcC
Q 039126 21 PEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLAT-NLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRS 98 (295)
Q Consensus 21 L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 98 (295)
+++..+.+..-...+..++.++.|++.++.+. +++ ...... +|++|++++ +.+..+|..++.+++|+.|++++ ..
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~ 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-ND 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-ch
Confidence 45555544333333444566666666666543 333 344443 666666666 45555555566666666666666 34
Q ss_pred CceeCCcc-cCccccEEeccCCCCCcccCcC--CC-CCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccC
Q 039126 99 LTNLSTSI-HLESLKKLILSGCSNLMSFPEL--FY-NIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKIC 174 (295)
Q Consensus 99 l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~--~~-~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~ 174 (295)
+.+++... ..++|+.|++++|+ ...+|.. .. .|+.+.+++|.+...+..+..+.++..+.+..| .+..++..++
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~ 252 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccchhc
Confidence 55555544 45666666666653 4455553 22 356666666655555555555556666555544 3333345555
Q ss_pred CCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccc
Q 039126 175 KLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWC 213 (295)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~ 213 (295)
.++.+++|++++|.+. .++. ++.. .+++.|++++.
T Consensus 253 ~l~~l~~L~~s~n~i~-~i~~-~~~~--~~l~~L~~s~n 287 (394)
T COG4886 253 NLSNLETLDLSNNQIS-SISS-LGSL--TNLRELDLSGN 287 (394)
T ss_pred cccccceecccccccc-cccc-cccc--CccCEEeccCc
Confidence 6666666666665432 2222 4444 66666666653
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=2.5e-11 Score=108.13 Aligned_cols=180 Identities=21% Similarity=0.284 Sum_probs=146.2
Q ss_pred CCCCcCCCCCC-CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc
Q 039126 4 CPFKSLSSIIR-PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS 81 (295)
Q Consensus 4 ~~~~~~p~~~~-~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (295)
..+..+|..+. +..|+.+.+..|.+..+|..+..+..|.+|+|+.|++ ..+| .+..++ |++|-+++ ++++.+|..
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ 161 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSN-NKLTSLPEE 161 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEec-CccccCCcc
Confidence 34566776653 7778999999999999999999999999999999985 4555 566666 88999988 789999999
Q ss_pred hhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCc--eEEccCccccccchhhhCCCCCcEEe
Q 039126 82 IRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIK--ELSLDGTAINELPSSIEYLSKLVILN 159 (295)
Q Consensus 82 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~--~L~l~~~~i~~~~~~~~~~~~L~~L~ 159 (295)
++....|.+||.+.|...+-.+...++.+|+.|.+..|. ...+|..+..|. .||++.|++..+|-.|.+|+.|++|-
T Consensus 162 ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeee
Confidence 999999999999986555444444569999999999975 667888777654 89999999999999999999999999
Q ss_pred cCCCcCCcCcccccCC---CCCCCeeeccCCC
Q 039126 160 LGNSSRLEGLPSKICK---LKSLQHLNLSCCS 188 (295)
Q Consensus 160 l~~~~~~~~~p~~l~~---l~~L~~L~l~~~~ 188 (295)
+.+| -+..-|.+++- ..-.++|+...|.
T Consensus 241 LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 241 LENN-PLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eccC-CCCCChHHHHhccceeeeeeecchhcc
Confidence 9988 47777776653 3335677777773
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.2e-10 Score=99.23 Aligned_cols=197 Identities=18% Similarity=0.186 Sum_probs=110.5
Q ss_pred CCCCceeEecCCCCccccc--hhhcCCCCCcEEecCCCCCCCcCC--C-CCCCCCCcEeeccccccccccccc-hhcccC
Q 039126 14 RPKNLVSPEIPRNSIKQLW--KVVQRLVNLKSINLNHSEHLTEIP--S-LSLATNLESLNFQRYTSLLETHSS-IRHLNK 87 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~L~~~~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~ 87 (295)
++++|+...|.++.+...+ .....|++++.|||+.|-+..--+ . ...+++|+.|+++.|......... -..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4667777777776665544 355677777777777774322112 1 456777777777775433222211 235667
Q ss_pred CcEEccccCcCCceeCCc--ccCccccEEeccCCCCCcc--cC-cCCCCCceEEccCccccccc--hhhhCCCCCcEEec
Q 039126 88 FVARNLKHCRSLTNLSTS--IHLESLKKLILSGCSNLMS--FP-ELFYNIKELSLDGTAINELP--SSIEYLSKLVILNL 160 (295)
Q Consensus 88 L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~--~~-~~~~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~l 160 (295)
|+.|.++.|..-..--.. ..+++|+.|++.+|..... .+ +.+..|+.|++++|.+...+ ...+.++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 777777776432211111 1367777777777632111 11 23346777788887776554 34567777777777
Q ss_pred CCCcCCc-Ccccc-----cCCCCCCCeeeccCCCCCC-CchhhhhccCCCCcceeeccc
Q 039126 161 GNSSRLE-GLPSK-----ICKLKSLQHLNLSCCSNLE-SFPNELRNLFPCDLYDIEAHW 212 (295)
Q Consensus 161 ~~~~~~~-~~p~~-----l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~~~L~~L~l~~ 212 (295)
+.|+.-. .+|+. ...+++|++|++..|++.+ .....+..+ .+|..|.+..
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l--~nlk~l~~~~ 335 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL--ENLKHLRITL 335 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc--chhhhhhccc
Confidence 7764322 12332 2356778888888776632 122233333 6666666543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.91 E-value=1.8e-09 Score=97.05 Aligned_cols=180 Identities=26% Similarity=0.377 Sum_probs=143.6
Q ss_pred CCCCceeEecCCCCccccchhhcCCC-CCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126 14 RPKNLVSPEIPRNSIKQLWKVVQRLV-NLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVAR 91 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 91 (295)
..+.++.|++.++.+++++.....+. +|+.|++++|.+ ..+| .+..+++|+.|++++ +.+..+|......+.|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhhe
Confidence 45679999999999999998888885 999999999985 4554 789999999999999 5777777776689999999
Q ss_pred ccccCcCCceeCCccc-CccccEEeccCCCCCcccCcCC---CCCceEEccCccccccchhhhCCCCCcEEecCCCcCCc
Q 039126 92 NLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLE 167 (295)
Q Consensus 92 ~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~ 167 (295)
++++ ..+..+|.... ...|+.+.+++|.. .+.+..+ .++..+.+..+.+..++..++.++.++.|++++| .+.
T Consensus 192 ~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~ 268 (394)
T COG4886 192 DLSG-NKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QIS 268 (394)
T ss_pred eccC-CccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceeeeccchhccccccceeccccc-ccc
Confidence 9998 67888888754 55699999999852 2334433 3555667778888777888889999999999988 566
Q ss_pred CcccccCCCCCCCeeeccCCCCCCCchhhhhc
Q 039126 168 GLPSKICKLKSLQHLNLSCCSNLESFPNELRN 199 (295)
Q Consensus 168 ~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 199 (295)
.++. ++.+..++.|+++++......+.....
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~ 299 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNALPLIALL 299 (394)
T ss_pred cccc-ccccCccCEEeccCccccccchhhhcc
Confidence 6765 888999999999998877665555443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=9.7e-10 Score=86.37 Aligned_cols=111 Identities=17% Similarity=0.281 Sum_probs=32.0
Q ss_pred CCcCCCCCCCCCceeEecCCCCccccchhhc-CCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccch-h
Q 039126 6 FKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQ-RLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSI-R 83 (295)
Q Consensus 6 ~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~ 83 (295)
++..|...++.+++.|+|++|.|..+. .++ .+.+|+.|++++|.+ ..++.+..++.|++|++++| .++.+...+ .
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~ 85 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNN-RISSISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHH
T ss_pred ccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCC-CCCccccchHH
Confidence 344555566778899999999888763 454 578899999999974 46677888889999999884 555665444 4
Q ss_pred cccCCcEEccccCcCCceeCC---cccCccccEEeccCCC
Q 039126 84 HLNKFVARNLKHCRSLTNLST---SIHLESLKKLILSGCS 120 (295)
Q Consensus 84 ~l~~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~ 120 (295)
.+++|+.|++++| .+.++.. ...+++|+.|++.+|.
T Consensus 86 ~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 86 NLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred hCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 6788888888874 3333322 1125555555555543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=9.2e-10 Score=95.42 Aligned_cols=176 Identities=19% Similarity=0.229 Sum_probs=126.7
Q ss_pred CCCCceeEecCCCCcc---ccchhhcCCCCCcEEecCCCCCCCcCCC--CCCCCCCcEeecccccccc-ccccchhcccC
Q 039126 14 RPKNLVSPEIPRNSIK---QLWKVVQRLVNLKSINLNHSEHLTEIPS--LSLATNLESLNFQRYTSLL-ETHSSIRHLNK 87 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~ 87 (295)
.+++++.|||++|-+. .+......+++|+.|+++.|.+.....+ -..+++|+.|.++.|.... .+......+|+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 5999999999999655 3456678999999999999987554432 3478899999999997553 34444678899
Q ss_pred CcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcc----cCcCCCCCceEEccCcccccc--chh-----hhCCCCC
Q 039126 88 FVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMS----FPELFYNIKELSLDGTAINEL--PSS-----IEYLSKL 155 (295)
Q Consensus 88 L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~L~~L~l~~~~i~~~--~~~-----~~~~~~L 155 (295)
|..|++.+|..+....... .+..|+.|+|++|++... ....+++|+.|+++.+++.++ |+. ...+++|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 9999999975333322222 378899999999875432 123566788889999988744 432 3567899
Q ss_pred cEEecCCCcCCcCcc--cccCCCCCCCeeeccCCCCC
Q 039126 156 VILNLGNSSRLEGLP--SKICKLKSLQHLNLSCCSNL 190 (295)
Q Consensus 156 ~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~ 190 (295)
++|++..|. +..++ ..+..+++|+.|.+..+.+.
T Consensus 304 ~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 304 EYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred eeeecccCc-cccccccchhhccchhhhhhccccccc
Confidence 999999985 44333 23556777788887776554
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=1e-09 Score=106.36 Aligned_cols=236 Identities=21% Similarity=0.241 Sum_probs=163.8
Q ss_pred CCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCC-CCcCCC--CCCCCCCcEeeccccccccccccch
Q 039126 6 FKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEH-LTEIPS--LSLATNLESLNFQRYTSLLETHSSI 82 (295)
Q Consensus 6 ~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~-~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (295)
..+.|...+...++++.+.++.+..++... .+++|+.|-+.+|.. ...++. |..++.|++||+++|....++|..+
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred ccccccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 334666667788899988888877666443 455899999999863 445553 8899999999999999999999999
Q ss_pred hcccCCcEEccccCcCCceeCCccc-CccccEEeccCCCCCcccCc---CCCCCceEEccCcccc---ccchhhhCCCCC
Q 039126 83 RHLNKFVARNLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAIN---ELPSSIEYLSKL 155 (295)
Q Consensus 83 ~~l~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~---~~~~~~~~~~~L 155 (295)
+.+-+|++|++++ +.+..+|..+. ++.|.+|++..+.....+|. .+.+|++|.+...... ....++..+.+|
T Consensus 592 ~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 592 GELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred hhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 9999999999998 78889999885 99999999998765555543 3557888877665422 112233344444
Q ss_pred cEEecCCCc-------------------------CCcCcccccCCCCCCCeeeccCCCCCCCchhhhhc---cC-CCCcc
Q 039126 156 VILNLGNSS-------------------------RLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRN---LF-PCDLY 206 (295)
Q Consensus 156 ~~L~l~~~~-------------------------~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~---~~-~~~L~ 206 (295)
+.+...... .....+..+..+++|+.|.+.+|...+........ .. .+++.
T Consensus 671 ~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~ 750 (889)
T KOG4658|consen 671 ENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLS 750 (889)
T ss_pred hhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHH
Confidence 444433221 11223344667888888888888765432221111 00 04555
Q ss_pred eeecccccccccccccchhhhccCCcccEEeecCCCCChhhh
Q 039126 207 DIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNV 248 (295)
Q Consensus 207 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 248 (295)
.+.+.+|...+.... ....++|+.|.+..|..+++..
T Consensus 751 ~~~~~~~~~~r~l~~-----~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 751 KVSILNCHMLRDLTW-----LLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred HHHhhccccccccch-----hhccCcccEEEEecccccccCC
Confidence 666667766666554 2478999999999999888763
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=9.9e-11 Score=96.84 Aligned_cols=178 Identities=19% Similarity=0.205 Sum_probs=102.0
Q ss_pred CCcEeecccccccc-ccccchhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCccc-----CcCCCCCceE
Q 039126 63 NLESLNFQRYTSLL-ETHSSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSF-----PELFYNIKEL 135 (295)
Q Consensus 63 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~-----~~~~~~L~~L 135 (295)
.|++||+++..... .+...+..+.+|+.|.+.++..-..+...+ .-.+|++|+++.|.-..+. ...+..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 36666666522111 122234556666666666532222222111 1345666666665433221 1233455566
Q ss_pred EccCcccc-cc-chhhhC-CCCCcEEecCCCcCC---cCcccccCCCCCCCeeeccCCCCCC-CchhhhhccCCCCccee
Q 039126 136 SLDGTAIN-EL-PSSIEY-LSKLVILNLGNSSRL---EGLPSKICKLKSLQHLNLSCCSNLE-SFPNELRNLFPCDLYDI 208 (295)
Q Consensus 136 ~l~~~~i~-~~-~~~~~~-~~~L~~L~l~~~~~~---~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~~~L~~L 208 (295)
+++.|... .. ...+.+ -++|..|+++|+... ..+..-..++++|..||+++|..+. .....+..+ +.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf--~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF--NYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc--chheee
Confidence 66666543 11 111222 257888888886432 1222335589999999999986654 444556666 999999
Q ss_pred ecccccccccccccchhhhccCCcccEEeecCCCCCh
Q 039126 209 EAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLH 245 (295)
Q Consensus 209 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 245 (295)
.++.|..+ +..........|+|.+|++.+|-.=+
T Consensus 344 SlsRCY~i---~p~~~~~l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 344 SLSRCYDI---IPETLLELNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred ehhhhcCC---ChHHeeeeccCcceEEEEeccccCch
Confidence 99999653 33334444789999999999985543
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.78 E-value=2.4e-08 Score=94.50 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=75.7
Q ss_pred CceeEecCCCCcc-ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126 17 NLVSPEIPRNSIK-QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK 94 (295)
Q Consensus 17 ~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 94 (295)
.++.|+|++|.+. .+|..++.+++|+.|+|++|.+.+.+| .+..+++|++|++++|.....+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888776 467778888888888888888877777 57888888888888877667777778888888888887
Q ss_pred cCcCCceeCCccc--CccccEEeccCCC
Q 039126 95 HCRSLTNLSTSIH--LESLKKLILSGCS 120 (295)
Q Consensus 95 ~~~~l~~l~~~~~--~~~L~~L~l~~~~ 120 (295)
+|.....+|..+. ..++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 7665556665442 2344555555554
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=7.5e-09 Score=81.38 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=26.4
Q ss_pred cccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccC--cCCCCCceEEccCccccccchhh-hCCCCCcEEe
Q 039126 84 HLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFP--ELFYNIKELSLDGTAINELPSSI-EYLSKLVILN 159 (295)
Q Consensus 84 ~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~-~~~~~L~~L~ 159 (295)
+..+++.|++.++ .++.+.... .+.+|+.|++++|.+. .+. ..+.+|+.|++++|.++++...+ ..+++|++|+
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccccccchhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3445666777663 333333222 3556666666666432 222 12345556666666666554433 2456666666
Q ss_pred cCCCcCCcCcc--cccCCCCCCCeeeccCCCCC
Q 039126 160 LGNSSRLEGLP--SKICKLKSLQHLNLSCCSNL 190 (295)
Q Consensus 160 l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~ 190 (295)
+++|. +..+. ..+..+++|++|++.+|+..
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence 66552 32221 22445555666666655543
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.73 E-value=8.6e-08 Score=84.46 Aligned_cols=74 Identities=18% Similarity=0.381 Sum_probs=44.3
Q ss_pred hcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcccCccccEE
Q 039126 35 VQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKL 114 (295)
Q Consensus 35 ~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L 114 (295)
+..+..++.|++++|. +..+|.+ -.+|++|.+++|..++.+|..+ .++|+.|++++|..+..+| .+|+.|
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceE
Confidence 4456777777777774 3444522 2347777777777666666433 2466777777665555555 345555
Q ss_pred eccC
Q 039126 115 ILSG 118 (295)
Q Consensus 115 ~l~~ 118 (295)
++..
T Consensus 118 ~L~~ 121 (426)
T PRK15386 118 EIKG 121 (426)
T ss_pred EeCC
Confidence 5554
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=1.1e-08 Score=86.61 Aligned_cols=228 Identities=15% Similarity=0.123 Sum_probs=144.9
Q ss_pred CCCCceeEecCCCCccc-----cchhhcCCCCCcEEecCCCCCCC----cCC--------CCCCCCCCcEeecccccccc
Q 039126 14 RPKNLVSPEIPRNSIKQ-----LWKVVQRLVNLKSINLNHSEHLT----EIP--------SLSLATNLESLNFQRYTSLL 76 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~----~~~--------~~~~l~~L~~L~l~~~~~~~ 76 (295)
....++.+++++|.+.. +.+.+.+-+.|+..+++.- |.| ++| .+-.+++|++++||.|..-.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 46778899999998762 4566677778888888775 233 233 14567789999999876554
Q ss_pred cccc----chhcccCCcEEccccCcCCceeCC-------------cc-cCccccEEeccCCCCCcccC--------cCCC
Q 039126 77 ETHS----SIRHLNKFVARNLKHCRSLTNLST-------------SI-HLESLKKLILSGCSNLMSFP--------ELFY 130 (295)
Q Consensus 77 ~~~~----~~~~l~~L~~L~l~~~~~l~~l~~-------------~~-~~~~L~~L~l~~~~~~~~~~--------~~~~ 130 (295)
..++ .+..+..|++|.+.+|..-..-.. .. ..+.|+.+....|. +..-+ ...+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHP 185 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhcc
Confidence 4443 356678888888887632221110 01 25678888887764 33222 2345
Q ss_pred CCceEEccCcccc--c---cchhhhCCCCCcEEecCCCcCCcC----cccccCCCCCCCeeeccCCCCCCCchhhhhccC
Q 039126 131 NIKELSLDGTAIN--E---LPSSIEYLSKLVILNLGNSSRLEG----LPSKICKLKSLQHLNLSCCSNLESFPNELRNLF 201 (295)
Q Consensus 131 ~L~~L~l~~~~i~--~---~~~~~~~~~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 201 (295)
+|+.+.+..|.|. . +...+.++++|+.|++..|..... +...+..+++|+.|++++|.+.......+..-+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 7888888888775 2 244567888999999988865432 233466688889999999877665444332211
Q ss_pred ---CCCcceeecccccccccccccchhhhccCCcccEEeecCCCC
Q 039126 202 ---PCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFK 243 (295)
Q Consensus 202 ---~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 243 (295)
-++|+.|.+.+|..-.+-......-....+.|..|++++|.-
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 278888888886532221111111123578888888888853
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=1e-08 Score=85.29 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=7.6
Q ss_pred ccCcccccccCCC
Q 039126 282 SAQSNVNRDVREP 294 (295)
Q Consensus 282 ~~~~~~~~~~~~~ 294 (295)
.++.+|++.+.-+
T Consensus 477 isgedvnPnvSgs 489 (490)
T KOG1259|consen 477 ISGEDVNPNVSGS 489 (490)
T ss_pred cccccCCCCCCCC
Confidence 4566666666544
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=1.2e-07 Score=89.70 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=70.6
Q ss_pred ccEEeccCCCCCcccCcCC---CCCceEEccCcccc-ccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccC
Q 039126 111 LKKLILSGCSNLMSFPELF---YNIKELSLDGTAIN-ELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSC 186 (295)
Q Consensus 111 L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~ 186 (295)
++.|+|++|...+.+|..+ .+|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5667777776666666543 35667777777776 6676777777777777777766666777777777777777777
Q ss_pred CCCCCCchhhhhccCCCCcceeecccccc
Q 039126 187 CSNLESFPNELRNLFPCDLYDIEAHWCSS 215 (295)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 215 (295)
|.+.+.+|..+... +.++..+++.+++.
T Consensus 500 N~l~g~iP~~l~~~-~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGR-LLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhc-cccCceEEecCCcc
Confidence 77777777776553 14556666665543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=1e-08 Score=85.27 Aligned_cols=126 Identities=24% Similarity=0.215 Sum_probs=69.6
Q ss_pred CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK 94 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 94 (295)
+..|+.+||++|.|+.+-+++.-.++++.|++++|.+. .+..+..+++|++||+++| .+.++..--..+-+.+.|.++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehh
Confidence 44566677777777666666666677777777776643 3333566666666666663 333333222244455555555
Q ss_pred cCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCcccccc--chhhhCCCCCcEEecCCCc
Q 039126 95 HCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINEL--PSSIEYLSKLVILNLGNSS 164 (295)
Q Consensus 95 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~l~~~~ 164 (295)
+ +.++.+.....+.+|..|++++| .|..+ ...++++|.|+++.+.+|+
T Consensus 361 ~-N~iE~LSGL~KLYSLvnLDl~~N---------------------~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 Q-NKIETLSGLRKLYSLVNLDLSSN---------------------QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred h-hhHhhhhhhHhhhhheecccccc---------------------chhhHHHhcccccccHHHHHhhcCCC
Confidence 5 34444443334555555555554 44422 2345666666666666663
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.58 E-value=5.1e-08 Score=63.02 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=46.7
Q ss_pred CCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccc
Q 039126 16 KNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYT 73 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 73 (295)
++|++|++++|++..++ ..+.++++|++|++++|.+....+ .|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57889999999888887 466889999999999888754444 48888888888888864
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.51 E-value=1.6e-08 Score=85.47 Aligned_cols=210 Identities=12% Similarity=0.081 Sum_probs=144.7
Q ss_pred chhhcCCCCCcEEecCCCCCCCcC-----CCCCCCCCCcEeecccc---ccccccccc-------hhcccCCcEEccccC
Q 039126 32 WKVVQRLVNLKSINLNHSEHLTEI-----PSLSLATNLESLNFQRY---TSLLETHSS-------IRHLNKFVARNLKHC 96 (295)
Q Consensus 32 ~~~~~~l~~L~~L~L~~~~~~~~~-----~~~~~l~~L~~L~l~~~---~~~~~~~~~-------~~~l~~L~~L~l~~~ 96 (295)
-+....+..++.+++++|.|..+- +.+...++|+..+++.- +....+|.. +...++|+++++++|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 345677889999999999874432 13677789999998862 122234433 345579999999998
Q ss_pred cCCceeCCcc-----cCccccEEeccCCCCCcc----------------cCcCCCCCceEEccCccccc-----cchhhh
Q 039126 97 RSLTNLSTSI-----HLESLKKLILSGCSNLMS----------------FPELFYNIKELSLDGTAINE-----LPSSIE 150 (295)
Q Consensus 97 ~~l~~l~~~~-----~~~~L~~L~l~~~~~~~~----------------~~~~~~~L~~L~l~~~~i~~-----~~~~~~ 150 (295)
..-...+..+ .+.+|++|++.+|..... -...-..|+.+...+|.+.. +...+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 6555544433 388999999999964321 01122368889999987753 334566
Q ss_pred CCCCCcEEecCCCcCCcC----cccccCCCCCCCeeeccCCCCCCCchhhhhccCC--CCcceeeccccccccccccc--
Q 039126 151 YLSKLVILNLGNSSRLEG----LPSKICKLKSLQHLNLSCCSNLESFPNELRNLFP--CDLYDIEAHWCSSLETLSGL-- 222 (295)
Q Consensus 151 ~~~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~--~~L~~L~l~~~~~l~~~~~~-- 222 (295)
..+.|+.+.+..|+.-.. +...+.+|++|++|++.+|-+.......++..+| ++|+.|++++|. ++.-...
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~ 261 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAF 261 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHH
Confidence 778999999999864322 3345789999999999998776655555544343 899999999995 4432211
Q ss_pred chhhhccCCcccEEeecCCC
Q 039126 223 SIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 223 ~~~~~~~~~~L~~L~l~~c~ 242 (295)
..++....|+|+.+.+.+|.
T Consensus 262 ~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHhccCCCCceeccCcch
Confidence 12334568999999999974
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.49 E-value=2e-08 Score=86.87 Aligned_cols=231 Identities=19% Similarity=0.249 Sum_probs=117.8
Q ss_pred CCCCceeEecCCCC-ccc--cchhhcCCCCCcEEecCCCCCCCcCC--C-CCCCCCCcEeeccccccccc--cccchhcc
Q 039126 14 RPKNLVSPEIPRNS-IKQ--LWKVVQRLVNLKSINLNHSEHLTEIP--S-LSLATNLESLNFQRYTSLLE--THSSIRHL 85 (295)
Q Consensus 14 ~~~~L~~L~l~~~~-~~~--l~~~~~~l~~L~~L~L~~~~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~--~~~~~~~l 85 (295)
++++++.|++.+|. +++ +-..-..|++|++|++..|....+.. . ...+++|.++++++|..+.. +-...+++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 47777777777763 332 11223567777777777765433322 1 34577777777777755443 11112333
Q ss_pred cCCcEE--------------------------ccccCcCCceeCCcc---cCccccEEeccCCCCCcccC-----cCCCC
Q 039126 86 NKFVAR--------------------------NLKHCRSLTNLSTSI---HLESLKKLILSGCSNLMSFP-----ELFYN 131 (295)
Q Consensus 86 ~~L~~L--------------------------~l~~~~~l~~l~~~~---~~~~L~~L~l~~~~~~~~~~-----~~~~~ 131 (295)
..++.+ ++.+|..+++..... ++..|+.+..++|...+..+ +...+
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 333333 333443333322111 24556666666654433211 23345
Q ss_pred CceEEccCcc-cc--ccchhhhCCCCCcEEecCCCcCCcCc--ccccCCCCCCCeeeccCCCCCCCc-hhhh----hccC
Q 039126 132 IKELSLDGTA-IN--ELPSSIEYLSKLVILNLGNSSRLEGL--PSKICKLKSLQHLNLSCCSNLESF-PNEL----RNLF 201 (295)
Q Consensus 132 L~~L~l~~~~-i~--~~~~~~~~~~~L~~L~l~~~~~~~~~--p~~l~~l~~L~~L~l~~~~~~~~~-~~~l----~~~~ 201 (295)
|+.|.++++. ++ .+..--.+++.|+.+++..|..+... -..-.+++.|+++.+++|....+- ...+ ...
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~- 400 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL- 400 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc-
Confidence 6666666663 33 22222244566777776666544322 222235677777777777544322 1111 122
Q ss_pred CCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhhhH
Q 039126 202 PCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVV 249 (295)
Q Consensus 202 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 249 (295)
..|+.+.+++|+.+++-.. .....+++|+.+++..|-..+..+.
T Consensus 401 -~~l~~lEL~n~p~i~d~~L---e~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 401 -EGLEVLELDNCPLITDATL---EHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred -cccceeeecCCCCchHHHH---HHHhhCcccceeeeechhhhhhhhh
Confidence 5667777777776555332 2234666777777777755555443
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.40 E-value=1.1e-06 Score=77.65 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=84.5
Q ss_pred CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126 14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL 93 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 93 (295)
.+++++.|++++|.++.+|. --..|+.|.+++|.-...+|..- .++|++|++++|..+..+|.. |+.|++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc------cceEEe
Confidence 47889999999999998882 22369999999987766777421 368999999999888877754 555555
Q ss_pred cc--CcCCceeCCcccCccccEEeccCCCCC--cccCcCC-CCCceEEccCccccccchhhhCCCCCcEEecCCC
Q 039126 94 KH--CRSLTNLSTSIHLESLKKLILSGCSNL--MSFPELF-YNIKELSLDGTAINELPSSIEYLSKLVILNLGNS 163 (295)
Q Consensus 94 ~~--~~~l~~l~~~~~~~~L~~L~l~~~~~~--~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~ 163 (295)
.+ +..+..+| ++|+.|.+.+++.. ..+|..+ .+|++|++.+|....+|..+ ..+|+.|+++.+
T Consensus 120 ~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATDSIKNVP-----NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKL--PESLQSITLHIE 187 (426)
T ss_pred CCCCCcccccCc-----chHhheeccccccccccccccccCCcccEEEecCCCcccCcccc--cccCcEEEeccc
Confidence 54 22344444 46777777543211 1122222 35667777666554444322 246666666553
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=4e-07 Score=58.79 Aligned_cols=58 Identities=29% Similarity=0.443 Sum_probs=37.7
Q ss_pred CCceEEccCccccccch-hhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCC
Q 039126 131 NIKELSLDGTAINELPS-SIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCS 188 (295)
Q Consensus 131 ~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 188 (295)
+|++|++++|.++.+|. .|..+++|+.|++++|.....-|..+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666677776776654 45667777777777764333333566777777777777764
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.28 E-value=3.9e-08 Score=85.10 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=63.9
Q ss_pred hCCCCCcEEecCCCcCCcCcc--cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhh
Q 039126 150 EYLSKLVILNLGNSSRLEGLP--SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFT 227 (295)
Q Consensus 150 ~~~~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 227 (295)
..+..|+.++.++|..++..+ .-..++++|+.+-++.|...+..--...+-.+++|+.+++.+|....+-. +....
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t--L~sls 368 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT--LASLS 368 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh--Hhhhc
Confidence 345678888888877665443 22347788888888888755443333222244888888888876555431 22233
Q ss_pred ccCCcccEEeecCCCCChhh
Q 039126 228 KISRNTQSFDFINCFKLHQN 247 (295)
Q Consensus 228 ~~~~~L~~L~l~~c~~l~~~ 247 (295)
..++.|+.+.+++|...++.
T Consensus 369 ~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred cCCchhccCChhhhhhhhhh
Confidence 57899999999999887777
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=8.1e-07 Score=74.04 Aligned_cols=176 Identities=17% Similarity=0.199 Sum_probs=96.5
Q ss_pred CCCceeEecCCCCccc---cchhhcCCCCCcEEecCCCCCCCcCCCC-CCCCCCcEeeccccccc-cccccchhcccCCc
Q 039126 15 PKNLVSPEIPRNSIKQ---LWKVVQRLVNLKSINLNHSEHLTEIPSL-SLATNLESLNFQRYTSL-LETHSSIRHLNKFV 89 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~ 89 (295)
+.+++.+||.+|.|++ +...+.++++|+.|+++.|.+...+..+ ...++|++|-+.+...- +.....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 6677778888887763 5555678888888888888766555544 46677888877663211 22223456677777
Q ss_pred EEccccCcCCceeCCc-----ccCccccEEeccCCCC-----CcccCcCCCCCceEEccCccccccc--hhhhCCCCCcE
Q 039126 90 ARNLKHCRSLTNLSTS-----IHLESLKKLILSGCSN-----LMSFPELFYNIKELSLDGTAINELP--SSIEYLSKLVI 157 (295)
Q Consensus 90 ~L~l~~~~~l~~l~~~-----~~~~~L~~L~l~~~~~-----~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~~~~L~~ 157 (295)
.|+++.|.. ..+-.+ -.-+.++.++...|.. ...+...++++..+.+..|++.+.. +....++.+..
T Consensus 150 elHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 150 ELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhccchh-hhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 777776421 111100 0122344455444421 1123345556666666666665332 22333455555
Q ss_pred EecCCCcCCcCc--ccccCCCCCCCeeeccCCCCCCC
Q 039126 158 LNLGNSSRLEGL--PSKICKLKSLQHLNLSCCSNLES 192 (295)
Q Consensus 158 L~l~~~~~~~~~--p~~l~~l~~L~~L~l~~~~~~~~ 192 (295)
|+++.+ .+... -.++.+++.|.-|.++++++++.
T Consensus 229 LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 229 LNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hhhccc-ccccHHHHHHHcCCchhheeeccCCccccc
Confidence 666554 23322 13455666666666666665543
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.13 E-value=2.8e-07 Score=83.31 Aligned_cols=170 Identities=25% Similarity=0.281 Sum_probs=79.5
Q ss_pred CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK 94 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 94 (295)
+.+++.|++.+|.|..+...+..+.+|++|++++|. +..+..+..++.|+.|++++| .+..+. .+..+..|+.++++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGN-LISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccC-cchhcc-CCccchhhhcccCC
Confidence 455555555555555544434555555555555554 234444444445555555553 223222 22335555555555
Q ss_pred cCcCCceeCC--cccCccccEEeccCCCCCccc-CcCCCCCceEEccCccccccchhhhCCC--CCcEEecCCCcCCcCc
Q 039126 95 HCRSLTNLST--SIHLESLKKLILSGCSNLMSF-PELFYNIKELSLDGTAINELPSSIEYLS--KLVILNLGNSSRLEGL 169 (295)
Q Consensus 95 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~~~--~L~~L~l~~~~~~~~~ 169 (295)
+| .+..+.. ...+.+++.+.+.+|.+...- ......+..+++..|.++.+... ..+. +|+.+++.++. +...
T Consensus 171 ~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l-~~~~~~~L~~l~l~~n~-i~~~ 247 (414)
T KOG0531|consen 171 YN-RIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGL-NELVMLHLRELYLSGNR-ISRS 247 (414)
T ss_pred cc-hhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCc-ccchhHHHHHHhcccCc-cccc
Confidence 53 2222222 123445555555554321110 01111222334444444433211 1112 26777777763 4444
Q ss_pred ccccCCCCCCCeeeccCCCCC
Q 039126 170 PSKICKLKSLQHLNLSCCSNL 190 (295)
Q Consensus 170 p~~l~~l~~L~~L~l~~~~~~ 190 (295)
+..+..+..+..+++..+.+.
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cccccccccccccchhhcccc
Confidence 345666777777887776543
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=5.2e-06 Score=49.50 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=30.7
Q ss_pred CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCC
Q 039126 16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHL 52 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~ 52 (295)
++|++|++++|+|+++|..+++|++|+.|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5789999999999999888899999999999999754
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=7.4e-07 Score=80.59 Aligned_cols=188 Identities=24% Similarity=0.292 Sum_probs=118.7
Q ss_pred CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL 93 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 93 (295)
+..+..++++.|.+..+-..++.+..|..|++.+|.+. .+.. +..+++|++|++++| .++.+. .+..+..|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccchhhhhcchheecccc-cccccc-chhhccchhhhee
Confidence 55666777788877775555788888999999998753 4444 788889999999884 555543 4556667888888
Q ss_pred ccCcCCceeCCcccCccccEEeccCCCCCcccC---cCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcc
Q 039126 94 KHCRSLTNLSTSIHLESLKKLILSGCSNLMSFP---ELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLP 170 (295)
Q Consensus 94 ~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p 170 (295)
.+ ..++.+...-.+.+|+.+++++|.+...-+ ....+++.+.+.+|.+..+.. +..+..+..+++..|. +..+-
T Consensus 148 ~~-N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~-i~~~~ 224 (414)
T KOG0531|consen 148 SG-NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNK-ISKLE 224 (414)
T ss_pred cc-CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc-hHHHHHHHHhhccccc-ceecc
Confidence 88 455666555457888888888886554434 455577788888888875542 1223344444555542 22221
Q ss_pred cccCCCC--CCCeeeccCCCCCCCchhhhhccCCCCcceeeccc
Q 039126 171 SKICKLK--SLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHW 212 (295)
Q Consensus 171 ~~l~~l~--~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~ 212 (295)
.+..+. +|+.+.++++.+.. .+..+... ..+..|++.+
T Consensus 225 -~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~--~~l~~l~~~~ 264 (414)
T KOG0531|consen 225 -GLNELVMLHLRELYLSGNRISR-SPEGLENL--KNLPVLDLSS 264 (414)
T ss_pred -CcccchhHHHHHHhcccCcccc-cccccccc--ccccccchhh
Confidence 122233 37888888876543 22333333 5555555553
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=1.3e-07 Score=87.20 Aligned_cols=123 Identities=27% Similarity=0.276 Sum_probs=81.7
Q ss_pred CCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCc---CCCCCceEEccC
Q 039126 63 NLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPE---LFYNIKELSLDG 139 (295)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~ 139 (295)
.|...+.++ +.+..++..+..++.++.|++++| +++.......++.|++|+|++|. +..+|. .-..|..|.+++
T Consensus 165 ~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshN-k~~~v~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSY-NRLVLMDESLQLLPALESLNLSHN-KFTKVDNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcch-hhHHhHHHHHHHHHHhhhhccchh-hhhhhHHHHhcccccccccccch-hccccccchhhhhheeeeecc
Confidence 455556655 567777777888888999999884 44555544458888899998874 444443 233578888888
Q ss_pred ccccccchhhhCCCCCcEEecCCCcCCcCccc--ccCCCCCCCeeeccCCCCC
Q 039126 140 TAINELPSSIEYLSKLVILNLGNSSRLEGLPS--KICKLKSLQHLNLSCCSNL 190 (295)
Q Consensus 140 ~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~ 190 (295)
|.++++-. +.++.+|+.||+++|- +..+.+ -+..+..|+.|.+.+|++.
T Consensus 242 N~l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88876643 4577788888888873 322211 1334666777888887643
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=6.9e-05 Score=44.62 Aligned_cols=33 Identities=39% Similarity=0.664 Sum_probs=18.2
Q ss_pred CCceEEccCccccccchhhhCCCCCcEEecCCC
Q 039126 131 NIKELSLDGTAINELPSSIEYLSKLVILNLGNS 163 (295)
Q Consensus 131 ~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~ 163 (295)
+|++|++++|.++.+|..++.+++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 355555555555555555556666666666655
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=7.7e-05 Score=71.20 Aligned_cols=100 Identities=27% Similarity=0.385 Sum_probs=55.8
Q ss_pred cCCcEEccccCcCCceeC-Ccc--cCccccEEeccCCCC----CcccCcCCCCCceEEccCccccccchhhhCCCCCcEE
Q 039126 86 NKFVARNLKHCRSLTNLS-TSI--HLESLKKLILSGCSN----LMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVIL 158 (295)
Q Consensus 86 ~~L~~L~l~~~~~l~~l~-~~~--~~~~L~~L~l~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L 158 (295)
.+|++|++++...+..-. ... .+|+|++|.+++-.+ ..++...+++|..||+++++++.+ ..++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 567788887743322111 111 277777777776332 123455666777777777777666 345566666666
Q ss_pred ecCCCcCCcCcc--cccCCCCCCCeeeccCC
Q 039126 159 NLGNSSRLEGLP--SKICKLKSLQHLNLSCC 187 (295)
Q Consensus 159 ~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~ 187 (295)
.+.+-. ..... ..+.++++|+.||+|..
T Consensus 201 ~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLE-FESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCC-CCchhhHHHHhcccCCCeeecccc
Confidence 665432 11111 23456677777777664
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=2.3e-05 Score=71.99 Aligned_cols=107 Identities=22% Similarity=0.276 Sum_probs=48.9
Q ss_pred CCCceeEecCCC-Cccc--cchhhcCCCCCcEEecCCC-CCCCcCC-----CCCCCCCCcEeeccccccccccc--cchh
Q 039126 15 PKNLVSPEIPRN-SIKQ--LWKVVQRLVNLKSINLNHS-EHLTEIP-----SLSLATNLESLNFQRYTSLLETH--SSIR 83 (295)
Q Consensus 15 ~~~L~~L~l~~~-~~~~--l~~~~~~l~~L~~L~L~~~-~~~~~~~-----~~~~l~~L~~L~l~~~~~~~~~~--~~~~ 83 (295)
++.|+.+.+.++ .+.. +-.....++.|+.|+++++ ......+ ....+.+|+.|++++|..++... ....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555554 2332 3344455666666666552 1111111 12345556666666654333221 1122
Q ss_pred cccCCcEEccccCcCCceeCCcc---cCccccEEeccCCCC
Q 039126 84 HLNKFVARNLKHCRSLTNLSTSI---HLESLKKLILSGCSN 121 (295)
Q Consensus 84 ~l~~L~~L~l~~~~~l~~l~~~~---~~~~L~~L~l~~~~~ 121 (295)
.+++|+.|.+.+|..+++..... .+++|+.|++++|..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 35566666655554433222111 255566666665543
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=8.8e-05 Score=70.79 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=70.6
Q ss_pred CCCceeEecCCCCcc--ccchhh-cCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccccchhcccCCc
Q 039126 15 PKNLVSPEIPRNSIK--QLWKVV-QRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHSSIRHLNKFV 89 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~--~l~~~~-~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (295)
-.+|+.||+++.... .=+..+ .-|+.|+.|.+++-.+..+-. -...+++|..||+|++ .+..+ .++..+++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence 456777777765432 223334 346777777777755433322 2456777777777773 34444 4566777777
Q ss_pred EEccccCcCCc--eeCCcccCccccEEeccCCCCCcc---------cCcCCCCCceEEccCcccc
Q 039126 90 ARNLKHCRSLT--NLSTSIHLESLKKLILSGCSNLMS---------FPELFYNIKELSLDGTAIN 143 (295)
Q Consensus 90 ~L~l~~~~~l~--~l~~~~~~~~L~~L~l~~~~~~~~---------~~~~~~~L~~L~l~~~~i~ 143 (295)
.|.+.+-.... ++-..+.+++|+.|++|....... -...+++|+.||.+++.+.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 77665522221 122233477777777776432211 1234557777777766554
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.47 E-value=2.4e-06 Score=79.18 Aligned_cols=100 Identities=24% Similarity=0.276 Sum_probs=57.8
Q ss_pred CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCC--CCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSL--SLATNLESLNFQRYTSLLETHSSIRHLNKFVARN 92 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 92 (295)
++.++.|||++|++.++- .+..|++|++|||++|.+ ..+|.+ ..|+ |+.|.+++| .++.+- ++.++++|+.||
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~lrnN-~l~tL~-gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLNLRNN-ALTTLR-GIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccchh-ccccccchhhhh-heeeeeccc-HHHhhh-hHHhhhhhhccc
Confidence 456666777777666654 566777777777777753 345532 2333 666777663 334332 456667777777
Q ss_pred cccCcCCcee---CCcccCccccEEeccCCC
Q 039126 93 LKHCRSLTNL---STSIHLESLKKLILSGCS 120 (295)
Q Consensus 93 l~~~~~l~~l---~~~~~~~~L~~L~l~~~~ 120 (295)
+++| .+... .....+..|+.|+|.+|.
T Consensus 261 lsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 261 LSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7763 22222 222235666667776664
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=6.8e-05 Score=62.85 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=51.6
Q ss_pred CCCCCcEEecCCCcCCc-CcccccCCCCCCCeeeccCCCCCC-CchhhhhccCCCCcceeeccccccccccccc--chhh
Q 039126 151 YLSKLVILNLGNSSRLE-GLPSKICKLKSLQHLNLSCCSNLE-SFPNELRNLFPCDLYDIEAHWCSSLETLSGL--SIIF 226 (295)
Q Consensus 151 ~~~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~ 226 (295)
.++++..+.+..|+.-. ..-.....++.+..|.++.+++.. ...+.+..+ ++|..|+++..+....+... .+.+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f--~~l~dlRv~~~Pl~d~l~~~err~ll 274 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGF--PQLVDLRVSENPLSDPLRGGERRFLL 274 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCC--chhheeeccCCcccccccCCcceEEE
Confidence 35677777666663211 111234456667778888876544 234556666 99999999988866655432 2223
Q ss_pred hccCCcccEEeec
Q 039126 227 TKISRNTQSFDFI 239 (295)
Q Consensus 227 ~~~~~~L~~L~l~ 239 (295)
...+++++.|+=+
T Consensus 275 IaRL~~v~vLNGs 287 (418)
T KOG2982|consen 275 IARLTKVQVLNGS 287 (418)
T ss_pred EeeccceEEecCc
Confidence 3456666666544
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.36 E-value=0.00041 Score=55.03 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=64.8
Q ss_pred CCCCCCCCceeEecCCCCccccchhhc-CCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccc-hhcccC
Q 039126 10 SSIIRPKNLVSPEIPRNSIKQLWKVVQ-RLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSS-IRHLNK 87 (295)
Q Consensus 10 p~~~~~~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~ 87 (295)
|.+++...=+.+++++.++..+.. ++ -+.....+||++|.+ ..++.|..++.|..|.+++| .+..+... -..+++
T Consensus 13 pqy~~~~~e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl-~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~ 89 (233)
T KOG1644|consen 13 PQYINSVRERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDL-RKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPN 89 (233)
T ss_pred hhhhhhccccccccccccccchhh-ccccccccceecccccch-hhcccCCCccccceEEecCC-cceeeccchhhhccc
Confidence 444444445667777776554333 32 234566788888873 45667777888888888774 44444434 345567
Q ss_pred CcEEccccCc--CCceeCCcccCccccEEeccCCC
Q 039126 88 FVARNLKHCR--SLTNLSTSIHLESLKKLILSGCS 120 (295)
Q Consensus 88 L~~L~l~~~~--~l~~l~~~~~~~~L~~L~l~~~~ 120 (295)
|+.|.+.+|. .+.++.....++.|++|.+-+|.
T Consensus 90 l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 90 LKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred cceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 7888777742 22233333446777777776664
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.25 E-value=8.8e-05 Score=61.43 Aligned_cols=196 Identities=18% Similarity=0.224 Sum_probs=104.1
Q ss_pred CCCceeEecCCCCccc-----cchhhcCCCCCcEEecCCCCCCCc----C--------CCCCCCCCCcEeeccccccccc
Q 039126 15 PKNLVSPEIPRNSIKQ-----LWKVVQRLVNLKSINLNHSEHLTE----I--------PSLSLATNLESLNFQRYTSLLE 77 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~~----~--------~~~~~l~~L~~L~l~~~~~~~~ 77 (295)
...+..+|||+|-|.+ +..-+..-.+|+..+++.-. .+. + +.+-+|++|+..++|.|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 5566777788776652 34445555667777766642 221 1 2246677777777777665555
Q ss_pred cccc----hhcccCCcEEccccCcCCceeCCc---------------ccCccccEEeccCCCCCcccCc--------CCC
Q 039126 78 THSS----IRHLNKFVARNLKHCRSLTNLSTS---------------IHLESLKKLILSGCSNLMSFPE--------LFY 130 (295)
Q Consensus 78 ~~~~----~~~l~~L~~L~l~~~~~l~~l~~~---------------~~~~~L~~L~l~~~~~~~~~~~--------~~~ 130 (295)
.|.. +..-..|.+|.+++|. +.-+... ..-+.|+.+....|... ..|. +=.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~ 185 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHE 185 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhc
Confidence 5543 3344667777777643 2221110 01355666666655422 1121 112
Q ss_pred CCceEEccCcccc-c-c----chhhhCCCCCcEEecCCCcCCcC----cccccCCCCCCCeeeccCCCCCCCchhhhhc-
Q 039126 131 NIKELSLDGTAIN-E-L----PSSIEYLSKLVILNLGNSSRLEG----LPSKICKLKSLQHLNLSCCSNLESFPNELRN- 199 (295)
Q Consensus 131 ~L~~L~l~~~~i~-~-~----~~~~~~~~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~- 199 (295)
+|+.+.+..|.|. . + -..+..+.+|+.|++..|..... +..++..++.|+.|.+.+|-.......++..
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 5666777777665 1 1 11234556777777777644321 2233445666777777777555443333221
Q ss_pred ---cCCCCcceeecccc
Q 039126 200 ---LFPCDLYDIEAHWC 213 (295)
Q Consensus 200 ---~~~~~L~~L~l~~~ 213 (295)
..-++|..|...+.
T Consensus 266 f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 266 FNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hhhhcCCCccccccchh
Confidence 22256666665543
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.19 E-value=0.00018 Score=59.69 Aligned_cols=182 Identities=12% Similarity=0.036 Sum_probs=114.6
Q ss_pred chhhcCCCCCcEEecCCCCCCCcCC-----CCCCCCCCcEeecccc---ccccccc-------cchhcccCCcEEccccC
Q 039126 32 WKVVQRLVNLKSINLNHSEHLTEIP-----SLSLATNLESLNFQRY---TSLLETH-------SSIRHLNKFVARNLKHC 96 (295)
Q Consensus 32 ~~~~~~l~~L~~L~L~~~~~~~~~~-----~~~~l~~L~~L~l~~~---~~~~~~~-------~~~~~l~~L~~L~l~~~ 96 (295)
-..+.-+..++.++|+||.+..+-. .+.+-.+|+..+++.- .....++ ..+-.+++|+..++++|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 3445557888899999998654332 2566778888887752 1111222 23456788999999987
Q ss_pred cCCceeCCcc-----cCccccEEeccCCCCCccc-----C------------cCCCCCceEEccCccccccchhh-----
Q 039126 97 RSLTNLSTSI-----HLESLKKLILSGCSNLMSF-----P------------ELFYNIKELSLDGTAINELPSSI----- 149 (295)
Q Consensus 97 ~~l~~l~~~~-----~~~~L~~L~l~~~~~~~~~-----~------------~~~~~L~~L~l~~~~i~~~~~~~----- 149 (295)
..-..+|... .-..|++|.+++|.. |.+ - ..-+.|+......|.+...+...
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l 181 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL 181 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence 6666666543 256788899988753 211 1 11235677777777766444321
Q ss_pred hCCCCCcEEecCCCcCCcC-----cccccCCCCCCCeeeccCCCCCCCchhhhhccCC--CCcceeeccccc
Q 039126 150 EYLSKLVILNLGNSSRLEG-----LPSKICKLKSLQHLNLSCCSNLESFPNELRNLFP--CDLYDIEAHWCS 214 (295)
Q Consensus 150 ~~~~~L~~L~l~~~~~~~~-----~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~--~~L~~L~l~~~~ 214 (295)
..=..|+.+.+.+|+.-.. +-..+..+.+|+.||+++|-+.-.....++..+| +.|+.|.+.+|-
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 1225788888888754322 1122456888999999998776655555555444 668888888874
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.18 E-value=0.00069 Score=53.77 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=70.4
Q ss_pred CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCC-CCCCCcEeeccccccccccc-cchhcccCCcEEc
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLS-LATNLESLNFQRYTSLLETH-SSIRHLNKFVARN 92 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~ 92 (295)
......+||++|.+..+. -+.++.+|..|.++.|.+...-|.+. .+++|..|.+++|+..+--. ..+..++.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 445667889988877654 36688889999999998776667654 46779999998864333221 2366788888888
Q ss_pred cccCcCCceeCCc-----ccCccccEEeccCC
Q 039126 93 LKHCRSLTNLSTS-----IHLESLKKLILSGC 119 (295)
Q Consensus 93 l~~~~~l~~l~~~-----~~~~~L~~L~l~~~ 119 (295)
+-+|+ ++..+.. ..+++|+.|+...-
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 88753 3332221 13788888888653
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.14 E-value=3.4e-05 Score=57.37 Aligned_cols=77 Identities=27% Similarity=0.372 Sum_probs=36.0
Q ss_pred ccccEEeccCCCCCcccCcC----CCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeec
Q 039126 109 ESLKKLILSGCSNLMSFPEL----FYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNL 184 (295)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 184 (295)
..|+..+|++|. ...+|.. ++.++.+++++|.++++|.++..++.|+.++++.|. +...|+.+..+.++-.|+.
T Consensus 53 ~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcC
Confidence 344445555543 2233322 223445555555555555555555555555555542 3334444444445555554
Q ss_pred cCC
Q 039126 185 SCC 187 (295)
Q Consensus 185 ~~~ 187 (295)
.+|
T Consensus 131 ~~n 133 (177)
T KOG4579|consen 131 PEN 133 (177)
T ss_pred CCC
Confidence 443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00034 Score=57.57 Aligned_cols=102 Identities=21% Similarity=0.188 Sum_probs=61.2
Q ss_pred CCCceeEecCCCCccccchhhcCCCCCcEEecCCC--CCCCcCCC-CCCCCCCcEeecccccccc-ccccchhcccCCcE
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHS--EHLTEIPS-LSLATNLESLNFQRYTSLL-ETHSSIRHLNKFVA 90 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~--~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~ 90 (295)
...|+.+.+.+..++.+. .+..+++||+|.++.| ...+.++. ...+++|+++++++|..-. +.-..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 555666666666555432 2456778888888888 44444442 4556888888888854221 11234667778888
Q ss_pred EccccCcCCceeCCc---cc--CccccEEeccC
Q 039126 91 RNLKHCRSLTNLSTS---IH--LESLKKLILSG 118 (295)
Q Consensus 91 L~l~~~~~l~~l~~~---~~--~~~L~~L~l~~ 118 (295)
|++.+|.... +... .+ +++|++|+-..
T Consensus 121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhcccCCccc-cccHHHHHHHHhhhhccccccc
Confidence 8887764333 2211 11 67777766544
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=9.4e-05 Score=61.44 Aligned_cols=59 Identities=22% Similarity=0.188 Sum_probs=25.5
Q ss_pred CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCC--cCCCCCCCCCCcEeeccccc
Q 039126 14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLT--EIPSLSLATNLESLNFQRYT 73 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~--~~~~~~~l~~L~~L~l~~~~ 73 (295)
.++.|++|.|+-|+|+.+. .+.+|++|+.|.|..|.+.. ++..+.++++|+.|.|..|.
T Consensus 39 kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 3444555555555444442 23444555555554443211 11123444445555444443
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.54 E-value=0.0004 Score=51.80 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=70.2
Q ss_pred CCceeEecCCCCccccc---hhhcCCCCCcEEecCCCCCCCcCCCC-CCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126 16 KNLVSPEIPRNSIKQLW---KVVQRLVNLKSINLNHSEHLTEIPSL-SLATNLESLNFQRYTSLLETHSSIRHLNKFVAR 91 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 91 (295)
.-+..+||+.|.+..++ ..+.+...|+..+|++|.+-...+.| .+++.++.|++++ +.+..+|..+..|+.|+.+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence 34556788888776554 44566677777888888764333344 4566788888887 5777888888888888888
Q ss_pred ccccCcCCceeCCcc-cCccccEEeccCCC
Q 039126 92 NLKHCRSLTNLSTSI-HLESLKKLILSGCS 120 (295)
Q Consensus 92 ~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~ 120 (295)
+++.| .+...|.-+ .+.++-+|+..+|.
T Consensus 106 Nl~~N-~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 106 NLRFN-PLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccccC-ccccchHHHHHHHhHHHhcCCCCc
Confidence 88884 344444433 36677777777664
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.00017 Score=59.94 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=74.0
Q ss_pred CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccccccc--chhcccCCcEEc
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHS--SIRHLNKFVARN 92 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~ 92 (295)
+.+++.|+..+|.+.++.. ..+|+.|++|.|+-|.+ ..+..+..|++|++|+|.. +.+..+.+ .+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkI-ssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKI-SSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeecccc-ccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence 6678899999999988753 47899999999999984 5666788999999999998 46666664 367899999999
Q ss_pred cccCcCCceeCCcc------cCccccEEe
Q 039126 93 LKHCRSLTNLSTSI------HLESLKKLI 115 (295)
Q Consensus 93 l~~~~~l~~l~~~~------~~~~L~~L~ 115 (295)
|..|+=...-+..- .+++|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 98865433333221 167777764
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.49 E-value=0.002 Score=53.14 Aligned_cols=82 Identities=22% Similarity=0.222 Sum_probs=41.7
Q ss_pred CccccEEeccCCCCCcc-cCcCCCCCceEEccCc--ccc-ccchhhhCCCCCcEEecCCCcCC--cCcccccCCCCCCCe
Q 039126 108 LESLKKLILSGCSNLMS-FPELFYNIKELSLDGT--AIN-ELPSSIEYLSKLVILNLGNSSRL--EGLPSKICKLKSLQH 181 (295)
Q Consensus 108 ~~~L~~L~l~~~~~~~~-~~~~~~~L~~L~l~~~--~i~-~~~~~~~~~~~L~~L~l~~~~~~--~~~p~~l~~l~~L~~ 181 (295)
+..|+.+++.++..++- --+.+++|++|.++.| +++ .++.-...+++|+++++++|+.- ..++ .+..+++|.+
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhh
Confidence 34455555554432211 1123446677777777 443 34333344577777777776422 1222 2445566667
Q ss_pred eeccCCCCC
Q 039126 182 LNLSCCSNL 190 (295)
Q Consensus 182 L~l~~~~~~ 190 (295)
|++.+|+..
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 777766544
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.42 E-value=0.0032 Score=57.79 Aligned_cols=64 Identities=22% Similarity=0.277 Sum_probs=26.4
Q ss_pred CCCCcEEecCCCcCCcCcc-ccc-CCCCCCCeeeccCCC-CCCCchhhhhccCCCCcceeeccccccc
Q 039126 152 LSKLVILNLGNSSRLEGLP-SKI-CKLKSLQHLNLSCCS-NLESFPNELRNLFPCDLYDIEAHWCSSL 216 (295)
Q Consensus 152 ~~~L~~L~l~~~~~~~~~p-~~l-~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~~~L~~L~l~~~~~l 216 (295)
+++|+.++++++..+...- ..+ ..|+.|++|.+..|. ..+.....+.. .+++|++|++++|..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~-~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE-RCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH-hcCcccEEeeecCccc
Confidence 3455555555544222211 111 125555555555544 22222222222 1144555555555544
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.33 E-value=0.0017 Score=32.21 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=15.6
Q ss_pred CceeEecCCCCccccchhhcC
Q 039126 17 NLVSPEIPRNSIKQLWKVVQR 37 (295)
Q Consensus 17 ~L~~L~l~~~~~~~l~~~~~~ 37 (295)
+|++||+++|+++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477888888888877776654
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.0025 Score=50.68 Aligned_cols=89 Identities=15% Similarity=0.189 Sum_probs=51.3
Q ss_pred CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCC-CchhhhhccCCCCcceeecccccccccccccchhhhccCCc
Q 039126 154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLE-SFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRN 232 (295)
Q Consensus 154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 232 (295)
.++.++.+++.....--+-+..++.++.|.+.+|.-.+ ...+.++. .-++|+.|+|++|+.+++-.. +....+++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL---~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGL---ACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHH---HHHHHhhh
Confidence 35666666554333333445666777777777775443 23333444 227777777777777666332 33356677
Q ss_pred ccEEeecCCCCChh
Q 039126 233 TQSFDFINCFKLHQ 246 (295)
Q Consensus 233 L~~L~l~~c~~l~~ 246 (295)
|+.|.+.+.+....
T Consensus 178 Lr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 178 LRRLHLYDLPYVAN 191 (221)
T ss_pred hHHHHhcCchhhhc
Confidence 77777776654443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.25 E-value=0.01 Score=29.39 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=6.3
Q ss_pred ceEEccCccccccch
Q 039126 133 KELSLDGTAINELPS 147 (295)
Q Consensus 133 ~~L~l~~~~i~~~~~ 147 (295)
++|++++|.++.+|.
T Consensus 3 ~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 3 EYLDLSGNNLTSIPS 17 (22)
T ss_dssp SEEEETSSEESEEGT
T ss_pred cEEECCCCcCEeCCh
Confidence 344444444444443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.04 E-value=0.014 Score=26.87 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=8.0
Q ss_pred CCceeEecCCCCccccc
Q 039126 16 KNLVSPEIPRNSIKQLW 32 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~ 32 (295)
++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35666666666665554
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.0075 Score=48.02 Aligned_cols=75 Identities=12% Similarity=0.190 Sum_probs=43.8
Q ss_pred CCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhhhHhhHHHHHH
Q 039126 179 LQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGIINNAQ 257 (295)
Q Consensus 179 L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 257 (295)
++.++.+++.+..+..+.+.++ ++++.|.+.+|..+.+-.. ..+.+..++|+.|+++.|+.+++-....+.....
T Consensus 103 IeaVDAsds~I~~eGle~L~~l--~~i~~l~l~~ck~~dD~~L--~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDL--RSIKSLSLANCKYFDDWCL--ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred EEEEecCCchHHHHHHHHHhcc--chhhhheeccccchhhHHH--HHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 4566666666666666666666 6666666666665554433 2233456666666666666666665555444443
No 74
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.83 E-value=0.061 Score=27.72 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=16.1
Q ss_pred CCcccEEeecCCCCChhhhHhhH
Q 039126 230 SRNTQSFDFINCFKLHQNVVQGI 252 (295)
Q Consensus 230 ~~~L~~L~l~~c~~l~~~~~~~~ 252 (295)
+++|++|++++|+++++.....+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 46778888888888777755443
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.28 E-value=1.2 Score=32.65 Aligned_cols=96 Identities=25% Similarity=0.363 Sum_probs=43.6
Q ss_pred CCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeecccccccccccc-chhcccCCc
Q 039126 14 RPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFV 89 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~ 89 (295)
.+++|+.+.+.. .+..++ ..+..++.|+.+.+..+ ...++ .+..++.++.+.+.. .+..++. .+..+++++
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccccccccccccc
Confidence 466777777764 455665 34567777888877764 23333 467776777777754 3333332 345566777
Q ss_pred EEccccCcCCceeCCccc--CccccEEecc
Q 039126 90 ARNLKHCRSLTNLSTSIH--LESLKKLILS 117 (295)
Q Consensus 90 ~L~l~~~~~l~~l~~~~~--~~~L~~L~l~ 117 (295)
.+++.. .+..++.... + .|+.+.+.
T Consensus 85 ~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 85 NIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred ccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 766643 2444443321 3 55555544
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.25 E-value=1.3 Score=32.44 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=35.9
Q ss_pred hhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeecccccccccccc-chhcccCCcEEccccCcCCceeCCcc--cC
Q 039126 34 VVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKHCRSLTNLSTSI--HL 108 (295)
Q Consensus 34 ~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~--~~ 108 (295)
.+.++.+|+.+.+... ...++ .|..+.+|+.+.+.. .+..++. .+..+++++.+.+.+ .+..++... .+
T Consensus 7 ~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-
T ss_pred HHhCCCCCCEEEECCC--eeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--ccccccccccccc
Confidence 3466777777777643 22333 366777777777765 2444443 355565666666643 333444332 15
Q ss_pred ccccEEeccC
Q 039126 109 ESLKKLILSG 118 (295)
Q Consensus 109 ~~L~~L~l~~ 118 (295)
.+|+.+.+..
T Consensus 81 ~~l~~i~~~~ 90 (129)
T PF13306_consen 81 TNLKNIDIPS 90 (129)
T ss_dssp TTECEEEETT
T ss_pred ccccccccCc
Confidence 5666665543
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.12 E-value=0.2 Score=25.67 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=14.9
Q ss_pred CCCceeEecCCCCccccchhh
Q 039126 15 PKNLVSPEIPRNSIKQLWKVV 35 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~ 35 (295)
+++|+.|+|++|.+..+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356778888888877777543
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.12 E-value=0.2 Score=25.67 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=14.9
Q ss_pred CCCceeEecCCCCccccchhh
Q 039126 15 PKNLVSPEIPRNSIKQLWKVV 35 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~ 35 (295)
+++|+.|+|++|.+..+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356778888888877777543
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.60 E-value=0.31 Score=24.35 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=5.7
Q ss_pred CCCCeeeccCCCCC
Q 039126 177 KSLQHLNLSCCSNL 190 (295)
Q Consensus 177 ~~L~~L~l~~~~~~ 190 (295)
++|++|++++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34455555554433
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.41 E-value=0.038 Score=45.18 Aligned_cols=82 Identities=12% Similarity=0.098 Sum_probs=60.4
Q ss_pred CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126 14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN 92 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 92 (295)
..+..+.||++.|.+..+...++-++.|..|+++.|.+ ...| ++.....++++++.. +..+..|...+..+++++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhh
Confidence 46777888888887776666677777788888887763 4455 677777777777766 56677887888888888888
Q ss_pred cccCc
Q 039126 93 LKHCR 97 (295)
Q Consensus 93 l~~~~ 97 (295)
.-++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 77654
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.96 E-value=1.3 Score=22.78 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=12.8
Q ss_pred CCceeEecCCCCccccch
Q 039126 16 KNLVSPEIPRNSIKQLWK 33 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~~ 33 (295)
.+|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457777777777777764
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=77.54 E-value=0.043 Score=50.47 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=39.2
Q ss_pred ceeEecCCCCccc-----cchhhcCCCCCcEEecCCCCCCCcCC-----CCCCC-CCCcEeecccccccc----ccccch
Q 039126 18 LVSPEIPRNSIKQ-----LWKVVQRLVNLKSINLNHSEHLTEIP-----SLSLA-TNLESLNFQRYTSLL----ETHSSI 82 (295)
Q Consensus 18 L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~~~~-----~~~~l-~~L~~L~l~~~~~~~----~~~~~~ 82 (295)
+..+.|.+|.+.. +...+.....|..|++++|.+....- .+... +.+++|++..|.... .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5556666665542 33455666667777777776542211 12222 445555555543222 122233
Q ss_pred hcccCCcEEccccCc
Q 039126 83 RHLNKFVARNLKHCR 97 (295)
Q Consensus 83 ~~l~~L~~L~l~~~~ 97 (295)
.....++.+++..|.
T Consensus 169 ~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNG 183 (478)
T ss_pred hcccchhHHHHHhcc
Confidence 344555555555543
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.54 E-value=2.2 Score=21.96 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=8.9
Q ss_pred CCceeEecCCCCccc
Q 039126 16 KNLVSPEIPRNSIKQ 30 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~ 30 (295)
.+|+.|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666665543
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=70.77 E-value=0.13 Score=42.15 Aligned_cols=90 Identities=10% Similarity=0.071 Sum_probs=65.2
Q ss_pred ccc-hhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCccc-
Q 039126 30 QLW-KVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIH- 107 (295)
Q Consensus 30 ~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~- 107 (295)
++| ..+..+.+.+.||++.|........++.+..+..|+++. +.+...|..++....++.++... +.++..|...+
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k 109 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKK 109 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccc
Confidence 444 456777888888888887654445677778888888887 56677888888888888887765 56677776664
Q ss_pred CccccEEeccCCCC
Q 039126 108 LESLKKLILSGCSN 121 (295)
Q Consensus 108 ~~~L~~L~l~~~~~ 121 (295)
.+.+++++...+.+
T Consensus 110 ~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEF 123 (326)
T ss_pred cCCcchhhhccCcc
Confidence 67777777766653
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.11 E-value=4.8 Score=20.94 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=9.5
Q ss_pred CCceeEecCCCCcc
Q 039126 16 KNLVSPEIPRNSIK 29 (295)
Q Consensus 16 ~~L~~L~l~~~~~~ 29 (295)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777665
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.97 E-value=15 Score=34.18 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=51.1
Q ss_pred CCCCceeEecCCCCcccc---chhhcCCCCCcEEecCCCCC-CCcCCCCC--CCCCCcEeecccccccccccc---chh-
Q 039126 14 RPKNLVSPEIPRNSIKQL---WKVVQRLVNLKSINLNHSEH-LTEIPSLS--LATNLESLNFQRYTSLLETHS---SIR- 83 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~L~~~~~-~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~---~~~- 83 (295)
+.+.+..+.|++|++..+ ..-....++|+.|+|++|.. +...+.+. +...|++|-+.+|...+.... .+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 367788889999977644 34346788999999999921 22223333 344588899999765554321 122
Q ss_pred ---cccCCcEEc
Q 039126 84 ---HLNKFVARN 92 (295)
Q Consensus 84 ---~l~~L~~L~ 92 (295)
.+|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 567777776
No 87
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=42.35 E-value=18 Score=17.31 Aligned_cols=18 Identities=33% Similarity=0.757 Sum_probs=12.8
Q ss_pred CceeEecCCCCccccchh
Q 039126 17 NLVSPEIPRNSIKQLWKV 34 (295)
Q Consensus 17 ~L~~L~l~~~~~~~l~~~ 34 (295)
+|..|++++.++..++++
T Consensus 1 ~LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEG 18 (20)
T ss_pred CcEEEECCCCChHHhcCc
Confidence 467788888877766654
No 88
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=35.70 E-value=53 Score=18.99 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=4.7
Q ss_pred CCCCcceeec
Q 039126 201 FPCDLYDIEA 210 (295)
Q Consensus 201 ~~~~L~~L~l 210 (295)
+|++|++|.+
T Consensus 32 lP~sl~~L~f 41 (44)
T PF05725_consen 32 LPNSLKSLSF 41 (44)
T ss_pred cCCCceEEEe
Confidence 3444554444
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.25 E-value=51 Score=30.95 Aligned_cols=62 Identities=26% Similarity=0.231 Sum_probs=29.7
Q ss_pred CCceEEccCcccc---ccchhhhCCCCCcEEecCCCcCCcCcccccCCC--CCCCeeeccCCCCCCC
Q 039126 131 NIKELSLDGTAIN---ELPSSIEYLSKLVILNLGNSSRLEGLPSKICKL--KSLQHLNLSCCSNLES 192 (295)
Q Consensus 131 ~L~~L~l~~~~i~---~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l--~~L~~L~l~~~~~~~~ 192 (295)
.+..+.+++|.+. .+..-....|+|..|+|++|.....--.++.++ ..|++|.+.+|++.+.
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 3445556666544 222222344666667776662222111223322 2356666666665543
Done!