Query 039126
Match_columns 295
No_of_seqs 165 out of 2531
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 10:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 100.0 2E-27 6.8E-32 206.7 17.0 217 15-240 80-310 (328)
2 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-25 6.6E-30 192.9 12.4 219 16-242 50-279 (313)
3 3rgz_A Protein brassinosteroid 99.9 2E-24 6.8E-29 207.8 19.9 230 9-244 410-717 (768)
4 1ogq_A PGIP-2, polygalacturona 99.9 7.7E-25 2.6E-29 189.2 14.5 231 8-246 67-306 (313)
5 4fcg_A Uncharacterized protein 99.9 1.3E-24 4.4E-29 188.9 15.0 205 3-212 90-310 (328)
6 3rgz_A Protein brassinosteroid 99.9 2.9E-24 9.8E-29 206.7 17.3 232 9-247 434-743 (768)
7 3zyi_A Leucine-rich repeat-con 99.9 4.2E-23 1.4E-27 187.1 22.1 231 3-243 63-302 (452)
8 3zyj_A Leucine-rich repeat-con 99.9 8.1E-23 2.8E-27 184.5 21.3 232 3-244 52-292 (440)
9 2z66_A Variable lymphocyte rec 99.9 3.4E-23 1.2E-27 178.1 17.4 238 2-248 15-265 (306)
10 4eco_A Uncharacterized protein 99.9 5.2E-24 1.8E-28 200.8 12.7 204 5-213 194-443 (636)
11 3v47_A TOLL-like receptor 5B a 99.9 1.5E-22 5.2E-27 183.2 21.3 89 5-95 21-112 (455)
12 1xku_A Decorin; proteoglycan, 99.9 3.2E-22 1.1E-26 173.9 21.2 225 3-241 40-273 (330)
13 1ozn_A Reticulon 4 receptor; N 99.9 4.5E-22 1.5E-26 169.4 21.3 214 20-242 15-236 (285)
14 2ft3_A Biglycan; proteoglycan, 99.9 3.6E-22 1.2E-26 173.7 20.2 225 3-241 42-274 (332)
15 4eco_A Uncharacterized protein 99.9 7.4E-23 2.5E-27 192.9 17.1 224 8-244 345-600 (636)
16 3t6q_A CD180 antigen; protein- 99.9 9.4E-22 3.2E-26 184.3 22.0 177 14-190 276-462 (606)
17 2id5_A Lingo-1, leucine rich r 99.9 8.1E-22 2.8E-26 179.6 20.8 231 3-241 20-282 (477)
18 3v47_A TOLL-like receptor 5B a 99.9 8.1E-22 2.8E-26 178.5 20.4 111 131-247 300-411 (455)
19 3t6q_A CD180 antigen; protein- 99.9 1.3E-21 4.5E-26 183.3 22.5 238 3-247 287-563 (606)
20 3o6n_A APL1; leucine-rich repe 99.9 2.9E-22 9.8E-27 178.1 16.9 104 15-120 68-176 (390)
21 2id5_A Lingo-1, leucine rich r 99.9 1.1E-21 3.8E-26 178.8 20.8 224 14-243 78-332 (477)
22 4fmz_A Internalin; leucine ric 99.9 2.2E-21 7.6E-26 169.5 21.8 229 2-248 52-303 (347)
23 3oja_B Anopheles plasmodium-re 99.9 3.6E-22 1.2E-26 186.9 17.5 216 15-242 74-356 (597)
24 4fmz_A Internalin; leucine ric 99.9 2.5E-21 8.7E-26 169.2 21.8 226 3-242 75-322 (347)
25 1xku_A Decorin; proteoglycan, 99.9 4.6E-21 1.6E-25 166.5 22.7 233 3-243 61-305 (330)
26 4ecn_A Leucine-rich repeat pro 99.9 1.1E-21 3.8E-26 189.4 20.5 216 14-243 571-839 (876)
27 2z80_A TOLL-like receptor 2, v 99.9 2.3E-22 7.8E-27 176.4 14.1 236 3-248 40-318 (353)
28 1ozn_A Reticulon 4 receptor; N 99.9 4.4E-21 1.5E-25 163.3 20.3 210 3-215 20-237 (285)
29 3o6n_A APL1; leucine-rich repe 99.9 9E-21 3.1E-25 168.4 22.7 225 3-242 78-350 (390)
30 3oja_B Anopheles plasmodium-re 99.9 7.4E-21 2.5E-25 178.1 22.7 205 3-214 84-356 (597)
31 3vq2_A TLR4, TOLL-like recepto 99.9 3E-21 1E-25 180.9 18.9 233 5-248 296-562 (606)
32 2ft3_A Biglycan; proteoglycan, 99.9 9.3E-21 3.2E-25 164.8 20.7 233 3-244 63-307 (332)
33 3bz5_A Internalin-J, INLJ; leu 99.9 6.6E-21 2.3E-25 172.7 20.4 175 3-191 51-247 (457)
34 4ecn_A Leucine-rich repeat pro 99.9 6.5E-21 2.2E-25 184.0 21.6 215 14-240 546-785 (876)
35 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-21 3.9E-26 183.7 15.8 201 13-215 347-557 (606)
36 2z66_A Variable lymphocyte rec 99.9 2E-21 6.8E-26 167.0 16.0 209 3-214 37-259 (306)
37 3zyj_A Leucine-rich repeat-con 99.9 1.4E-20 5E-25 169.8 21.4 208 3-214 73-290 (440)
38 3zyi_A Leucine-rich repeat-con 99.9 1.7E-20 5.7E-25 169.9 21.1 207 4-214 85-301 (452)
39 2z7x_B TOLL-like receptor 1, v 99.9 3.4E-21 1.2E-25 177.3 16.8 114 3-120 9-126 (520)
40 2z7x_B TOLL-like receptor 1, v 99.9 1E-20 3.5E-25 174.1 18.5 93 3-97 30-126 (520)
41 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-20 6.5E-25 169.7 19.9 198 5-218 75-301 (457)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.1E-20 1.4E-24 171.8 21.3 113 3-120 40-157 (562)
43 1o6v_A Internalin A; bacterial 99.9 5.2E-20 1.8E-24 167.3 20.2 222 2-242 54-298 (466)
44 2z81_A CD282 antigen, TOLL-lik 99.8 1.8E-20 6.3E-25 173.5 16.9 85 151-242 332-421 (549)
45 2z62_A TOLL-like receptor 4, v 99.8 5.9E-20 2E-24 155.5 18.3 116 4-121 17-136 (276)
46 2z63_A TOLL-like receptor 4, v 99.8 2.5E-20 8.5E-25 173.2 16.9 225 15-247 281-534 (570)
47 3j0a_A TOLL-like receptor 5; m 99.8 5.6E-20 1.9E-24 178.6 19.7 169 3-173 13-194 (844)
48 1o6v_A Internalin A; bacterial 99.8 1.7E-19 5.7E-24 164.0 21.4 222 3-241 77-341 (466)
49 1ziw_A TOLL-like receptor 3; i 99.8 7.5E-20 2.6E-24 173.6 19.6 159 3-164 13-182 (680)
50 1wwl_A Monocyte differentiatio 99.8 1.1E-20 3.9E-25 162.9 12.6 212 18-242 65-307 (312)
51 3o53_A Protein LRIM1, AGAP0063 99.8 6.7E-20 2.3E-24 158.4 16.8 213 14-244 32-250 (317)
52 2o6q_A Variable lymphocyte rec 99.8 1.6E-19 5.4E-24 152.5 18.5 191 16-213 16-215 (270)
53 1ziw_A TOLL-like receptor 3; i 99.8 9E-20 3.1E-24 173.1 18.8 238 3-242 34-340 (680)
54 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.2E-19 4.1E-24 168.7 18.5 134 108-247 352-513 (562)
55 3oja_A Leucine-rich immune mol 99.8 8.3E-20 2.8E-24 166.8 16.9 212 15-244 33-250 (487)
56 2z80_A TOLL-like receptor 2, v 99.8 3.7E-20 1.3E-24 162.3 13.2 209 3-215 61-313 (353)
57 3j0a_A TOLL-like receptor 5; m 99.8 1.7E-19 5.7E-24 175.3 18.8 223 14-242 71-373 (844)
58 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-20 6E-25 162.0 10.7 213 3-220 43-279 (317)
59 4ay9_X Follicle-stimulating ho 99.8 1E-19 3.6E-24 159.3 15.1 226 3-240 18-255 (350)
60 2xwt_C Thyrotropin receptor; s 99.8 1.2E-19 4.2E-24 150.3 14.6 200 6-213 23-236 (239)
61 2z81_A CD282 antigen, TOLL-lik 99.8 6.2E-20 2.1E-24 169.9 14.0 207 4-213 15-233 (549)
62 1h6u_A Internalin H; cell adhe 99.8 1.8E-19 6.1E-24 155.1 15.8 196 12-221 37-234 (308)
63 2z63_A TOLL-like receptor 4, v 99.8 4E-19 1.4E-23 165.1 18.5 183 2-187 15-210 (570)
64 2ast_B S-phase kinase-associat 99.8 4.2E-20 1.4E-24 160.6 11.1 225 16-249 47-288 (336)
65 2z62_A TOLL-like receptor 4, v 99.8 5E-19 1.7E-23 149.8 17.1 213 20-242 11-235 (276)
66 3rfs_A Internalin B, repeat mo 99.8 3.7E-19 1.3E-23 150.4 15.9 199 11-221 36-240 (272)
67 2o6q_A Variable lymphocyte rec 99.8 3.1E-18 1.1E-22 144.6 20.5 185 3-192 25-220 (270)
68 1p9a_G Platelet glycoprotein I 99.8 1.3E-18 4.6E-23 148.4 17.7 190 14-212 8-204 (290)
69 3rfs_A Internalin B, repeat mo 99.8 6.1E-19 2.1E-23 149.1 15.1 190 2-200 49-245 (272)
70 4glp_A Monocyte differentiatio 99.8 8.9E-19 3.1E-23 150.8 15.8 217 14-242 62-305 (310)
71 2xwt_C Thyrotropin receptor; s 99.8 2.7E-19 9.3E-24 148.3 12.0 205 27-244 22-239 (239)
72 1jl5_A Outer protein YOPM; leu 99.8 4E-18 1.4E-22 154.3 20.6 131 6-146 143-273 (454)
73 3g06_A SSPH2 (leucine-rich rep 99.8 5.6E-18 1.9E-22 158.4 22.1 219 3-252 49-304 (622)
74 3g06_A SSPH2 (leucine-rich rep 99.8 4.2E-18 1.4E-22 159.3 21.1 193 3-217 70-298 (622)
75 2ast_B S-phase kinase-associat 99.8 2.9E-20 9.8E-25 161.7 5.7 196 16-213 70-282 (336)
76 1jl5_A Outer protein YOPM; leu 99.8 7.9E-18 2.7E-22 152.4 21.8 140 39-190 131-270 (454)
77 1wwl_A Monocyte differentiatio 99.8 7.1E-20 2.4E-24 157.9 7.4 193 14-214 93-307 (312)
78 1p9a_G Platelet glycoprotein I 99.8 8.7E-18 3E-22 143.3 20.1 200 34-246 5-210 (290)
79 1h6u_A Internalin H; cell adhe 99.8 3E-18 1E-22 147.4 16.6 181 2-191 49-231 (308)
80 3oja_A Leucine-rich immune mol 99.8 1.3E-18 4.6E-23 158.8 13.9 198 30-242 21-225 (487)
81 2ca6_A RAN GTPase-activating p 99.8 1.2E-19 4.2E-24 160.9 6.7 229 14-246 30-318 (386)
82 3m19_A Variable lymphocyte rec 99.8 2.4E-17 8.1E-22 137.6 17.4 173 16-192 14-194 (251)
83 4glp_A Monocyte differentiatio 99.8 1.8E-18 6.2E-23 148.9 10.4 192 15-214 90-305 (310)
84 3cvr_A Invasion plasmid antige 99.7 2.3E-17 7.8E-22 152.6 16.7 182 16-220 59-247 (571)
85 3cvr_A Invasion plasmid antige 99.7 3.1E-17 1.1E-21 151.7 16.9 166 16-199 80-252 (571)
86 3goz_A Leucine-rich repeat-con 99.7 1.9E-18 6.5E-23 152.0 6.1 229 10-243 15-296 (362)
87 1h6t_A Internalin B; cell adhe 99.7 2.8E-17 9.5E-22 140.2 13.1 167 15-214 45-211 (291)
88 4ay9_X Follicle-stimulating ho 99.7 8.6E-17 2.9E-21 140.8 14.2 216 19-248 12-240 (350)
89 3m19_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 129.4 17.5 162 2-166 22-192 (251)
90 2ca6_A RAN GTPase-activating p 99.7 1.7E-17 5.7E-22 147.2 7.7 226 14-242 58-341 (386)
91 1m9s_A Internalin B; cell inva 99.7 9.1E-17 3.1E-21 150.0 12.5 174 9-191 36-211 (605)
92 1z7x_W Ribonuclease inhibitor; 99.7 1.3E-17 4.4E-22 151.0 6.0 60 14-73 54-124 (461)
93 4g8a_A TOLL-like receptor 4; l 99.7 1E-15 3.5E-20 143.6 18.1 225 15-246 348-582 (635)
94 3goz_A Leucine-rich repeat-con 99.7 2.6E-17 8.8E-22 144.8 5.9 220 20-242 2-264 (362)
95 2o6s_A Variable lymphocyte rec 99.7 6.7E-16 2.3E-20 125.0 13.5 171 19-200 10-188 (208)
96 1dce_A Protein (RAB geranylger 99.7 5.8E-19 2E-23 163.7 -5.5 208 14-238 347-567 (567)
97 1z7x_W Ribonuclease inhibitor; 99.7 1.7E-17 5.9E-22 150.2 4.3 150 14-163 111-294 (461)
98 1h6t_A Internalin B; cell adhe 99.7 7.2E-16 2.5E-20 131.5 13.6 187 17-242 25-211 (291)
99 4ezg_A Putative uncharacterize 99.7 2.3E-16 7.9E-21 126.7 9.8 149 36-190 41-194 (197)
100 2o6s_A Variable lymphocyte rec 99.7 1.2E-15 4.3E-20 123.4 14.1 179 4-195 17-203 (208)
101 1m9s_A Internalin B; cell inva 99.7 1.1E-15 3.8E-20 142.6 15.1 193 15-221 20-214 (605)
102 1xeu_A Internalin C; cellular 99.7 1.1E-16 3.6E-21 134.6 6.6 167 14-190 17-185 (263)
103 4g8a_A TOLL-like receptor 4; l 99.6 9.7E-15 3.3E-19 136.9 17.8 203 11-214 366-578 (635)
104 4ezg_A Putative uncharacterize 99.6 5.2E-15 1.8E-19 118.8 12.0 148 14-164 42-192 (197)
105 3e6j_A Variable lymphocyte rec 99.6 2.3E-14 7.9E-19 117.8 15.4 152 18-193 21-175 (229)
106 3ogk_B Coronatine-insensitive 99.6 1.2E-16 4.1E-21 149.1 1.7 230 13-248 267-529 (592)
107 2xot_A Amphoterin-induced prot 99.6 1.1E-14 3.8E-19 127.8 12.8 169 19-191 21-203 (361)
108 2v9t_B SLIT homolog 2 protein 99.6 3.1E-14 1E-18 116.3 14.0 149 19-190 14-165 (220)
109 1xeu_A Internalin C; cellular 99.6 1E-14 3.5E-19 122.5 10.8 154 4-165 29-184 (263)
110 2v70_A SLIT-2, SLIT homolog 2 99.6 5.6E-14 1.9E-18 114.8 13.4 149 19-192 14-168 (220)
111 2v9t_B SLIT homolog 2 protein 99.5 1E-13 3.5E-18 113.2 14.3 117 3-122 20-141 (220)
112 2xot_A Amphoterin-induced prot 99.5 7.7E-14 2.6E-18 122.5 14.3 159 3-165 27-201 (361)
113 3ogk_B Coronatine-insensitive 99.5 5.8E-15 2E-19 137.7 7.2 194 14-211 162-411 (592)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 2E-13 7E-18 111.4 14.4 119 3-123 20-143 (220)
115 3e6j_A Variable lymphocyte rec 99.5 3.1E-13 1.1E-17 111.0 14.9 116 3-121 28-147 (229)
116 2p1m_B Transport inhibitor res 99.5 6.9E-15 2.4E-19 137.2 4.0 35 15-49 104-140 (594)
117 2ell_A Acidic leucine-rich nuc 99.5 9.4E-14 3.2E-18 108.4 9.4 134 14-171 22-164 (168)
118 2p1m_B Transport inhibitor res 99.5 1.1E-14 3.8E-19 135.8 3.9 214 30-250 280-524 (594)
119 4b8c_D Glucose-repressible alc 99.5 1.3E-13 4.5E-18 131.5 9.6 187 15-213 172-369 (727)
120 2ell_A Acidic leucine-rich nuc 99.4 6.2E-13 2.1E-17 103.7 10.9 78 134-214 75-158 (168)
121 2je0_A Acidic leucine-rich nuc 99.4 5.2E-13 1.8E-17 102.0 9.2 124 15-161 16-148 (149)
122 4b8c_D Glucose-repressible alc 99.4 5.8E-14 2E-18 133.9 3.6 147 31-187 216-369 (727)
123 1dce_A Protein (RAB geranylger 99.4 1.5E-14 5.1E-19 134.2 -0.9 171 58-242 345-544 (567)
124 1w8a_A SLIT protein; signaling 99.4 3.4E-12 1.2E-16 101.8 12.6 122 19-143 11-139 (192)
125 1w8a_A SLIT protein; signaling 99.4 3.2E-12 1.1E-16 102.0 11.9 116 5-121 19-138 (192)
126 1a9n_A U2A', U2A'; complex (nu 99.4 2E-12 6.8E-17 101.7 10.0 85 10-96 13-98 (176)
127 2wfh_A SLIT homolog 2 protein 99.4 5.5E-12 1.9E-16 100.8 12.7 80 16-95 31-111 (193)
128 2je0_A Acidic leucine-rich nuc 99.4 1.2E-12 4.2E-17 99.9 8.1 64 145-211 80-148 (149)
129 1a9n_A U2A', U2A'; complex (nu 99.3 7E-12 2.4E-16 98.5 9.4 60 150-213 85-150 (176)
130 3sb4_A Hypothetical leucine ri 99.3 2E-11 6.9E-16 105.6 12.6 100 129-237 225-327 (329)
131 2wfh_A SLIT homolog 2 protein 99.3 3.7E-11 1.3E-15 95.9 13.2 126 112-244 13-139 (193)
132 2o6r_A Variable lymphocyte rec 99.3 4.3E-11 1.5E-15 94.0 12.0 122 18-144 9-138 (177)
133 2o6r_A Variable lymphocyte rec 99.2 4.7E-10 1.6E-14 88.0 13.0 125 112-244 10-137 (177)
134 1ds9_A Outer arm dynein; leuci 99.2 1.3E-12 4.3E-17 104.8 -2.2 132 28-183 37-180 (198)
135 1ds9_A Outer arm dynein; leuci 99.2 9.7E-13 3.3E-17 105.5 -3.0 110 81-194 43-157 (198)
136 3g39_A Variable lymphocyte rec 99.1 5.2E-10 1.8E-14 87.3 9.8 100 18-121 11-114 (170)
137 3g39_A Variable lymphocyte rec 99.1 8.7E-10 3E-14 86.0 10.4 94 3-98 18-114 (170)
138 2r9u_A Variable lymphocyte rec 99.1 1.1E-09 3.7E-14 85.8 10.4 101 18-122 14-118 (174)
139 2r9u_A Variable lymphocyte rec 99.1 9.1E-10 3.1E-14 86.3 9.8 99 42-145 15-120 (174)
140 4fdw_A Leucine rich hypothetic 98.9 7.4E-08 2.5E-12 85.4 18.8 207 16-241 135-355 (401)
141 3sb4_A Hypothetical leucine ri 98.9 1.1E-08 3.7E-13 88.3 11.9 188 15-209 100-327 (329)
142 3un9_A NLR family member X1; l 98.9 4.3E-10 1.5E-14 98.9 2.1 59 38-96 71-136 (372)
143 3un9_A NLR family member X1; l 98.9 1.7E-10 5.8E-15 101.5 -0.6 151 62-214 72-250 (372)
144 2ifg_A High affinity nerve gro 98.8 1.8E-08 6E-13 87.5 9.6 98 21-120 13-114 (347)
145 2ifg_A High affinity nerve gro 98.8 1.6E-08 5.4E-13 87.9 9.2 92 5-98 20-115 (347)
146 4fdw_A Leucine rich hypothetic 98.8 2.9E-07 1E-11 81.6 16.2 208 16-240 157-379 (401)
147 3e4g_A ATP synthase subunit S, 98.6 3.8E-08 1.3E-12 76.5 4.8 92 154-248 62-156 (176)
148 2ra8_A Uncharacterized protein 98.6 6.7E-08 2.3E-12 84.4 6.5 138 108-250 171-325 (362)
149 3e4g_A ATP synthase subunit S, 98.5 3.6E-08 1.2E-12 76.6 2.7 103 131-235 62-171 (176)
150 2ra8_A Uncharacterized protein 98.5 2.1E-07 7.4E-12 81.2 7.5 176 32-213 132-340 (362)
151 4fs7_A Uncharacterized protein 98.1 0.00015 5.3E-09 63.8 16.3 117 108-239 252-374 (394)
152 3rw6_A Nuclear RNA export fact 98.0 6.1E-06 2.1E-10 68.6 5.4 93 21-115 148-257 (267)
153 1io0_A Tropomodulin; LRR prote 98.0 3.2E-06 1.1E-10 66.5 3.1 111 33-143 30-164 (185)
154 1io0_A Tropomodulin; LRR prote 97.8 1.1E-05 3.7E-10 63.5 4.1 93 147-242 59-162 (185)
155 4gt6_A Cell surface protein; l 97.8 0.0012 4.2E-08 57.9 17.6 54 16-70 64-122 (394)
156 4gt6_A Cell surface protein; l 97.7 0.0024 8.1E-08 56.1 17.4 98 14-117 85-190 (394)
157 4fs7_A Uncharacterized protein 97.7 0.0029 9.8E-08 55.5 17.7 96 131-238 254-350 (394)
158 3rw6_A Nuclear RNA export fact 97.7 7E-05 2.4E-09 62.2 6.6 64 129-194 169-237 (267)
159 4h09_A Hypothetical leucine ri 97.2 0.033 1.1E-06 48.3 17.8 52 14-69 44-98 (379)
160 4h09_A Hypothetical leucine ri 96.9 0.065 2.2E-06 46.4 17.1 98 131-238 241-340 (379)
161 3rfe_A Platelet glycoprotein I 95.7 0.019 6.4E-07 41.9 5.6 52 20-73 12-66 (130)
162 1pgv_A TMD-1, tropomodulin TMD 95.6 0.011 3.8E-07 46.4 4.2 94 148-241 65-167 (197)
163 1pgv_A TMD-1, tropomodulin TMD 94.5 0.029 9.9E-07 44.1 3.8 80 131-212 71-166 (197)
164 3rfe_A Platelet glycoprotein I 93.9 0.11 3.7E-06 37.8 5.6 51 113-164 12-66 (130)
165 2lz0_A Uncharacterized protein 35.7 51 0.0018 22.1 4.2 33 15-48 19-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2e-27 Score=206.72 Aligned_cols=217 Identities=24% Similarity=0.347 Sum_probs=196.7
Q ss_pred CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL 93 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 93 (295)
.++++.|++++|.+..+|..+..+++|++|++++|.+. .+| .+..+++|++|++++|. +..+|..+..+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 48899999999999999999999999999999999977 777 58999999999999964 5588989999999999999
Q ss_pred ccCcCCceeCCccc----------CccccEEeccCCCCCcccCcCC---CCCceEEccCccccccchhhhCCCCCcEEec
Q 039126 94 KHCRSLTNLSTSIH----------LESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINELPSSIEYLSKLVILNL 160 (295)
Q Consensus 94 ~~~~~l~~l~~~~~----------~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l 160 (295)
++|...+.+|..+. +++|+.|++++|.+. .+|..+ .+|++|++++|.++.+|..++.+++|+.|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 99988888887653 899999999998754 777654 4788999999999999999999999999999
Q ss_pred CCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecC
Q 039126 161 GNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFIN 240 (295)
Q Consensus 161 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 240 (295)
++|...+.+|..++++++|++|++++|...+.+|..+..+ ++|++|++++|+.++.+|..+ ..+++|+.+.+..
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l--~~L~~L~L~~n~~~~~iP~~l----~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL--TQLEKLDLRGCVNLSRLPSLI----AQLPANCIILVPP 310 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC--TTCCEEECTTCTTCCCCCGGG----GGSCTTCEEECCG
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC--CCCCEEeCCCCCchhhccHHH----hhccCceEEeCCH
Confidence 9998889999999999999999999999999999999998 999999999999999998765 6889999998864
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.9e-25 Score=192.93 Aligned_cols=219 Identities=12% Similarity=0.106 Sum_probs=154.0
Q ss_pred CCceeEecCCCCcc---ccchhhcCCCCCcEEecCC-CCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcE
Q 039126 16 KNLVSPEIPRNSIK---QLWKVVQRLVNLKSINLNH-SEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVA 90 (295)
Q Consensus 16 ~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~L~~-~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 90 (295)
.+++.|++++|.+. .+|..++++++|++|++++ |.+.+.+| .+..+++|++|++++|.....+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57888888888777 4677788888888888884 77766777 5778888888888886655577777788888888
Q ss_pred EccccCcCCceeCCcc-cCccccEEeccCCCCCcccCcCCC----CCceEEccCcccc-ccchhhhCCCCCcEEecCCCc
Q 039126 91 RNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFY----NIKELSLDGTAIN-ELPSSIEYLSKLVILNLGNSS 164 (295)
Q Consensus 91 L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~----~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~ 164 (295)
|++++|.....+|..+ .+++|++|++++|.+.+.+|..+. +|++|++++|.++ .+|..++.++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 8888765444555554 377888888888776666665443 5677788888777 6666676665 7777777775
Q ss_pred CCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126 165 RLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 165 ~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
.....|..+.++++|+.|++++|.+.+..+. +..+ ++|++|+++++.....++..+ ..+++|++|+++++.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l--~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS--KNLNGLDLRNNRIYGTLPQGL----TQLKFLHSLNVSFNN 279 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC--TTCCEEECCSSCCEECCCGGG----GGCTTCCEEECCSSE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc--CCCCEEECcCCcccCcCChHH----hcCcCCCEEECcCCc
Confidence 5556666777777777777777766555444 4444 777777777765332444433 467777777777763
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2e-24 Score=207.82 Aligned_cols=230 Identities=20% Similarity=0.171 Sum_probs=174.3
Q ss_pred CCCCC-CCCCceeEecCCCCcc-ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcc
Q 039126 9 LSSII-RPKNLVSPEIPRNSIK-QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHL 85 (295)
Q Consensus 9 ~p~~~-~~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 85 (295)
+|..+ .+++|++|++++|.+. .+|..++.+++|++|++++|.+.+.+| .+..+++|++|++++|...+.+|..+..+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 44433 4777777777777776 456777777788888888877777777 47777888888888876666777777888
Q ss_pred cCCcEEccccCcCCceeCCccc-CccccEEeccCCCCCcccCcCCC---CCceEEccCcccc-ccchhh-----------
Q 039126 86 NKFVARNLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAIN-ELPSSI----------- 149 (295)
Q Consensus 86 ~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~-~~~~~~----------- 149 (295)
++|++|++++|.....+|..+. +++|+.|++++|.+.+.+|..++ +|++|++++|.++ .+|..+
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 8888888888765556666553 77888888888877777776544 5678888887765 444332
Q ss_pred -----------------------------------------------------------hCCCCCcEEecCCCcCCcCcc
Q 039126 150 -----------------------------------------------------------EYLSKLVILNLGNSSRLEGLP 170 (295)
Q Consensus 150 -----------------------------------------------------------~~~~~L~~L~l~~~~~~~~~p 170 (295)
+.+++|+.|++++|...+.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 234678888999887777888
Q ss_pred cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126 171 SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL 244 (295)
Q Consensus 171 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 244 (295)
.++++++.|+.|++++|.+.+.+|..++.+ ++|++|+++++..-..+|..+ ..+++|++|+++++.--
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L--~~L~~LdLs~N~l~g~ip~~l----~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDL--RGLNILDLSSNKLDGRIPQAM----SALTMLTEIDLSNNNLS 717 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGC--TTCCEEECCSSCCEECCCGGG----GGCCCCSEEECCSSEEE
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCC--CCCCEEECCCCcccCcCChHH----hCCCCCCEEECcCCccc
Confidence 889999999999999999989999999998 999999999876555666644 67889999999998543
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=7.7e-25 Score=189.17 Aligned_cols=231 Identities=17% Similarity=0.132 Sum_probs=196.4
Q ss_pred cCCCCC-CCCCceeEecCC-CCcc-ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchh
Q 039126 8 SLSSII-RPKNLVSPEIPR-NSIK-QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIR 83 (295)
Q Consensus 8 ~~p~~~-~~~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (295)
.+|..+ .+++|++|++++ |.+. .+|..++.+++|++|++++|.+.+.+| .+..+++|++|++++|.....+|..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 466555 599999999995 8887 678899999999999999999888888 599999999999999877668898999
Q ss_pred cccCCcEEccccCcCCceeCCccc-Cc-cccEEeccCCCCCcccCcCCC--CCceEEccCcccc-ccchhhhCCCCCcEE
Q 039126 84 HLNKFVARNLKHCRSLTNLSTSIH-LE-SLKKLILSGCSNLMSFPELFY--NIKELSLDGTAIN-ELPSSIEYLSKLVIL 158 (295)
Q Consensus 84 ~l~~L~~L~l~~~~~l~~l~~~~~-~~-~L~~L~l~~~~~~~~~~~~~~--~L~~L~l~~~~i~-~~~~~~~~~~~L~~L 158 (295)
.+++|++|++++|.....+|..+. ++ +|+.|++++|.+.+.+|..+. +|++|++++|.++ ..|..+..+++|+.|
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence 999999999999765557777664 65 999999999988777887655 4789999999998 567778999999999
Q ss_pred ecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEee
Q 039126 159 NLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDF 238 (295)
Q Consensus 159 ~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 238 (295)
++++|.....+| .+..+++|++|++++|.+.+.+|..+..+ ++|++|+++++..-..+|.. ..+++|+.+++
T Consensus 227 ~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~ip~~-----~~l~~L~~l~l 298 (313)
T 1ogq_A 227 HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL--KFLHSLNVSFNNLCGEIPQG-----GNLQRFDVSAY 298 (313)
T ss_dssp ECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGC--TTCCEEECCSSEEEEECCCS-----TTGGGSCGGGT
T ss_pred ECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhcC--cCCCEEECcCCcccccCCCC-----ccccccChHHh
Confidence 999996554555 48899999999999999988999999998 99999999998654466652 57889999999
Q ss_pred cCCCCChh
Q 039126 239 INCFKLHQ 246 (295)
Q Consensus 239 ~~c~~l~~ 246 (295)
.+++.+..
T Consensus 299 ~~N~~lc~ 306 (313)
T 1ogq_A 299 ANNKCLCG 306 (313)
T ss_dssp CSSSEEES
T ss_pred cCCCCccC
Confidence 99886654
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.3e-24 Score=188.94 Aligned_cols=205 Identities=22% Similarity=0.299 Sum_probs=180.8
Q ss_pred CCCCCcCCCCC-CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126 3 GCPFKSLSSII-RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 3 ~~~~~~~p~~~-~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
+..+..+|..+ .+++|++|++++|.+..+|..++.+++|++|++++|.+. .+| .+..+++|++|++++|+..+.+|.
T Consensus 90 ~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 90 SVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp SSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred CCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence 34567788744 699999999999999999999999999999999999876 677 699999999999999999998887
Q ss_pred chhc---------ccCCcEEccccCcCCceeCCccc-CccccEEeccCCCCCcccCcCC---CCCceEEccCcccc-ccc
Q 039126 81 SIRH---------LNKFVARNLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAIN-ELP 146 (295)
Q Consensus 81 ~~~~---------l~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~-~~~ 146 (295)
.+.. +++|++|++++| .++.+|..+. +++|+.|++++|.+. .+|..+ .+|++|++++|.+. .+|
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred hHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhH
Confidence 7654 999999999996 5567777664 899999999999755 566544 57889999998776 788
Q ss_pred hhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccc
Q 039126 147 SSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHW 212 (295)
Q Consensus 147 ~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~ 212 (295)
..++.+++|+.|++++|...+.+|..++++++|++|++++|.+.+.+|..+..+ ++|+.+++..
T Consensus 247 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L--~~L~~l~l~~ 310 (328)
T 4fcg_A 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL--PANCIILVPP 310 (328)
T ss_dssp CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS--CTTCEEECCG
T ss_pred HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc--cCceEEeCCH
Confidence 889999999999999999999999999999999999999999999999999998 9999998875
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2.9e-24 Score=206.70 Aligned_cols=232 Identities=19% Similarity=0.198 Sum_probs=196.2
Q ss_pred CCCCC-CCCCceeEecCCCCcc-ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcc
Q 039126 9 LSSII-RPKNLVSPEIPRNSIK-QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHL 85 (295)
Q Consensus 9 ~p~~~-~~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 85 (295)
+|..+ .+++|+.|++++|.+. .+|..++.+++|++|++++|.+.+.+| .+..+++|++|++++|...+.+|..++.+
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence 45444 5899999999999988 578889999999999999999888888 58899999999999988777889889999
Q ss_pred cCCcEEccccCcCCceeCCccc-CccccEEeccCCCCCcccCcCC-----------------------------------
Q 039126 86 NKFVARNLKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPELF----------------------------------- 129 (295)
Q Consensus 86 ~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~----------------------------------- 129 (295)
++|++|++++|.....+|..+. +++|+.|++++|.+.+.+|..+
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 9999999999877667777664 8999999999987766655422
Q ss_pred --------------------------------------CCCceEEccCcccc-ccchhhhCCCCCcEEecCCCcCCcCcc
Q 039126 130 --------------------------------------YNIKELSLDGTAIN-ELPSSIEYLSKLVILNLGNSSRLEGLP 170 (295)
Q Consensus 130 --------------------------------------~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~~~~p 170 (295)
.+|++|++++|.++ .+|..++.++.|+.|++++|...+.+|
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 35778999999998 889999999999999999998888999
Q ss_pred cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhh
Q 039126 171 SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQN 247 (295)
Q Consensus 171 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 247 (295)
..++++++|++|++++|.+.+.+|..+..+ ++|++|++++++.-..+|.. ..+.++....+.+++.|-..
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l--~~L~~L~ls~N~l~g~iP~~-----~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSAL--TMLTEIDLSNNNLSGPIPEM-----GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGC--CCCSEEECCSSEEEEECCSS-----SSGGGSCGGGGCSCTEEEST
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCC--CCCCEEECcCCcccccCCCc-----hhhccCCHHHhcCCchhcCC
Confidence 999999999999999999999999999998 99999999998766677753 24455555566777766543
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=4.2e-23 Score=187.05 Aligned_cols=231 Identities=18% Similarity=0.162 Sum_probs=191.2
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
+..+..+|..+ .++++.|+|++|.+..+ +..++++++|++|++++|.+.+..+ .+..+++|++|++++|. +..++.
T Consensus 63 ~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 140 (452)
T 3zyi_A 63 RRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPS 140 (452)
T ss_dssp SSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCT
T ss_pred CCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccCh
Confidence 34566667533 47899999999999987 4678999999999999999876665 59999999999999965 555554
Q ss_pred -chhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc----CCCCCceEEccCccccccchhhhCCC
Q 039126 81 -SIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAINELPSSIEYLS 153 (295)
Q Consensus 81 -~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~~~~~~~~ 153 (295)
.+..+++|++|++++| .++.++... .+++|+.|++++|..++.++. .+.+|++|++++|.++.+| .+..++
T Consensus 141 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~ 218 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLV 218 (452)
T ss_dssp TTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCT
T ss_pred hhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccc
Confidence 4889999999999995 466666543 489999999999877777765 3558899999999999887 477899
Q ss_pred CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcc
Q 039126 154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNT 233 (295)
Q Consensus 154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L 233 (295)
+|+.|++++|......|..+.++++|+.|++++|.+.+..+..+..+ ++|+.|+++++ .++.++.... ..+++|
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~N-~l~~~~~~~~---~~l~~L 292 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL--ASLVELNLAHN-NLSSLPHDLF---TPLRYL 292 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECCSS-CCSCCCTTSS---TTCTTC
T ss_pred cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC--CCCCEEECCCC-cCCccChHHh---ccccCC
Confidence 99999999997666668889999999999999999888778888887 99999999997 5777765332 578999
Q ss_pred cEEeecCCCC
Q 039126 234 QSFDFINCFK 243 (295)
Q Consensus 234 ~~L~l~~c~~ 243 (295)
++|++++++-
T Consensus 293 ~~L~L~~Np~ 302 (452)
T 3zyi_A 293 VELHLHHNPW 302 (452)
T ss_dssp CEEECCSSCE
T ss_pred CEEEccCCCc
Confidence 9999998763
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=8.1e-23 Score=184.53 Aligned_cols=232 Identities=19% Similarity=0.151 Sum_probs=190.4
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
+..++.+|..+ .++++.|+|++|.+..++ ..+.++++|++|++++|.+....+ .+..+++|++|++++| .++.++.
T Consensus 52 ~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~ 129 (440)
T 3zyj_A 52 RKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPN 129 (440)
T ss_dssp SCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCT
T ss_pred CCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCH
Confidence 34566677543 478999999999999876 678999999999999998765555 5899999999999996 5556654
Q ss_pred -chhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc----CCCCCceEEccCccccccchhhhCCC
Q 039126 81 -SIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAINELPSSIEYLS 153 (295)
Q Consensus 81 -~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~~~~~~~~ 153 (295)
.+..+++|++|++++| .++.++... .+++|+.|++++|...+.++. .+.+|++|++++|.++.+|. +..++
T Consensus 130 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 207 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLI 207 (440)
T ss_dssp TTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCS
T ss_pred hHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCc
Confidence 5889999999999995 466666543 489999999999877777665 35588999999999998884 78899
Q ss_pred CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcc
Q 039126 154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNT 233 (295)
Q Consensus 154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L 233 (295)
+|+.|++++|......|..+.++++|+.|++++|.+.+..+..+..+ ++|++|+++++ .++.++.... ..+++|
T Consensus 208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~N-~l~~~~~~~~---~~l~~L 281 (440)
T 3zyj_A 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL--QSLVEINLAHN-NLTLLPHDLF---TPLHHL 281 (440)
T ss_dssp SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC--TTCCEEECTTS-CCCCCCTTTT---SSCTTC
T ss_pred ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC--CCCCEEECCCC-CCCccChhHh---ccccCC
Confidence 99999999996555557889999999999999999888778888887 99999999996 5777765332 578999
Q ss_pred cEEeecCCCCC
Q 039126 234 QSFDFINCFKL 244 (295)
Q Consensus 234 ~~L~l~~c~~l 244 (295)
+.|++++++--
T Consensus 282 ~~L~L~~Np~~ 292 (440)
T 3zyj_A 282 ERIHLHHNPWN 292 (440)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEcCCCCcc
Confidence 99999987643
No 9
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=3.4e-23 Score=178.06 Aligned_cols=238 Identities=18% Similarity=0.177 Sum_probs=187.4
Q ss_pred CCCCCCcCCCCCCCCCceeEecCCCCccccchh-hcCCCCCcEEecCCCCCCCcC--C-CCCCCCCCcEeeccccccccc
Q 039126 2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKV-VQRLVNLKSINLNHSEHLTEI--P-SLSLATNLESLNFQRYTSLLE 77 (295)
Q Consensus 2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~~--~-~~~~l~~L~~L~l~~~~~~~~ 77 (295)
.+..++++|..+ .+++++|++++|.++.+|.. ++++++|++|++++|.+.... + .+..+++|++|++++| .+..
T Consensus 15 ~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~ 92 (306)
T 2z66_A 15 NSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVIT 92 (306)
T ss_dssp CSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEE
T ss_pred CCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-cccc
Confidence 345577777633 47899999999999999865 689999999999999875432 3 4667899999999996 5567
Q ss_pred cccchhcccCCcEEccccCcCCceeCC--cc-cCccccEEeccCCCCCcccCcC---CCCCceEEccCccccc--cchhh
Q 039126 78 THSSIRHLNKFVARNLKHCRSLTNLST--SI-HLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINE--LPSSI 149 (295)
Q Consensus 78 ~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~--~~~~~ 149 (295)
+|..+..+++|++|++++| .++.++. .+ .+++|++|++++|...+..+.. +.+|++|++++|.++. +|..+
T Consensus 93 l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 171 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171 (306)
T ss_dssp EEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred ChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence 8877899999999999995 4455543 22 4899999999999866555554 4578899999999985 78889
Q ss_pred hCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhcc
Q 039126 150 EYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKI 229 (295)
Q Consensus 150 ~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 229 (295)
..+++|+.|++++|......|..+..+++|++|++++|.+.+..+..+..+ ++|++|+++++......+... ..
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~----~~ 245 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL--NSLQVLDYSLNHIMTSKKQEL----QH 245 (306)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC--TTCCEEECTTSCCCBCSSSSC----CC
T ss_pred hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc--ccCCEeECCCCCCcccCHHHH----Hh
Confidence 999999999999996555557889999999999999998877666677777 999999999975433333322 34
Q ss_pred C-CcccEEeecCCCCChhhh
Q 039126 230 S-RNTQSFDFINCFKLHQNV 248 (295)
Q Consensus 230 ~-~~L~~L~l~~c~~l~~~~ 248 (295)
+ ++|++|++++++--.+..
T Consensus 246 ~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCTTCCEEECTTCCEECSGG
T ss_pred hhccCCEEEccCCCeecccC
Confidence 4 599999999986444433
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=5.2e-24 Score=200.80 Aligned_cols=204 Identities=14% Similarity=0.131 Sum_probs=158.3
Q ss_pred CCCcCCCCC-CCCCceeEecCCCCccc------------------cchhhc--CCCCCcEEecCCCCCCCcCC-CCCCCC
Q 039126 5 PFKSLSSII-RPKNLVSPEIPRNSIKQ------------------LWKVVQ--RLVNLKSINLNHSEHLTEIP-SLSLAT 62 (295)
Q Consensus 5 ~~~~~p~~~-~~~~L~~L~l~~~~~~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~~~-~~~~l~ 62 (295)
.++.+|..+ .+++|++|++++|.++. +|..++ ++++|++|++++|.+.+.+| .+..++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 344577655 69999999999999998 999988 99999999999999999999 699999
Q ss_pred CCcEeeccccc-ccc-ccccchhcc------cCCcEEccccCcCCceeCC--cc-cCccccEEeccCCCCCcccCcCCC-
Q 039126 63 NLESLNFQRYT-SLL-ETHSSIRHL------NKFVARNLKHCRSLTNLST--SI-HLESLKKLILSGCSNLMSFPELFY- 130 (295)
Q Consensus 63 ~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~l~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~- 130 (295)
+|++|++++|. ... .+|..+..+ ++|++|++++|. ++.+|. .+ .+++|+.|++++|.+.+.+| .++
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 99999999987 444 688888776 999999999964 447887 44 48899999999998777888 544
Q ss_pred --CCceEEccCccccccchhhhCCCC-CcEEecCCCcCCcCcccccCCCC--CCCeeeccCCCCCCCchhhhh-------
Q 039126 131 --NIKELSLDGTAINELPSSIEYLSK-LVILNLGNSSRLEGLPSKICKLK--SLQHLNLSCCSNLESFPNELR------- 198 (295)
Q Consensus 131 --~L~~L~l~~~~i~~~~~~~~~~~~-L~~L~l~~~~~~~~~p~~l~~l~--~L~~L~l~~~~~~~~~~~~l~------- 198 (295)
+|++|++++|.++.+|..++.+++ |+.|++++|. +..+|..+..++ +|++|++++|.+.+..|..+.
T Consensus 352 l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 567888888888888887888877 8888888874 446776665543 677777777666665555544
Q ss_pred ccCCCCcceeecccc
Q 039126 199 NLFPCDLYDIEAHWC 213 (295)
Q Consensus 199 ~~~~~~L~~L~l~~~ 213 (295)
.+ ++|++|+++++
T Consensus 431 ~~--~~L~~L~Ls~N 443 (636)
T 4eco_A 431 KG--INVSSINLSNN 443 (636)
T ss_dssp CC--CCEEEEECCSS
T ss_pred cC--CCCCEEECcCC
Confidence 33 45555555553
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.5e-22 Score=183.24 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=42.3
Q ss_pred CCCcCCCCCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccccc
Q 039126 5 PFKSLSSIIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHSS 81 (295)
Q Consensus 5 ~~~~~p~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (295)
.++.+|. ..++|++|++++|.+.++ |..++++++|++|++++|.+.+.++ .+..+++|++|++++|......|..
T Consensus 21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh
Confidence 3444554 235555555555555544 3445555555555555555443332 2455555555555554333333333
Q ss_pred hhcccCCcEEcccc
Q 039126 82 IRHLNKFVARNLKH 95 (295)
Q Consensus 82 ~~~l~~L~~L~l~~ 95 (295)
+..+++|++|++++
T Consensus 99 ~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 99 FNGLANLEVLTLTQ 112 (455)
T ss_dssp TTTCTTCCEEECTT
T ss_pred ccCcccCCEEeCCC
Confidence 44444444444444
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=3.2e-22 Score=173.89 Aligned_cols=225 Identities=16% Similarity=0.147 Sum_probs=145.1
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
+..+..+|..+ .++++.|++++|.++.++. .++++++|++|++++|.+.+..| .+..+++|++|++++| .++.+|.
T Consensus 40 ~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~ 117 (330)
T 1xku_A 40 DLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE 117 (330)
T ss_dssp TSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS
T ss_pred CCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccCh
Confidence 34556666533 4678888998888888765 67888889999998888776656 5888888888888885 4555654
Q ss_pred chhcccCCcEEccccCcCCceeCCc-c-cCccccEEeccCCCCCc--ccCc---CCCCCceEEccCccccccchhhhCCC
Q 039126 81 SIRHLNKFVARNLKHCRSLTNLSTS-I-HLESLKKLILSGCSNLM--SFPE---LFYNIKELSLDGTAINELPSSIEYLS 153 (295)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~--~~~~---~~~~L~~L~l~~~~i~~~~~~~~~~~ 153 (295)
.+. ++|+.|++++| .++.++.. + .+++|+.|++++|.... ..+. .+.+|++|++++|.++.+|..+. +
T Consensus 118 ~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~ 192 (330)
T 1xku_A 118 KMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--P 192 (330)
T ss_dssp SCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--T
T ss_pred hhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--c
Confidence 433 67777777764 33344332 2 36677777777765432 2222 23456677777777766665432 5
Q ss_pred CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcc
Q 039126 154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNT 233 (295)
Q Consensus 154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L 233 (295)
+|++|++++|......|..+.++++|++|++++|.+.+..+..+..+ ++|++|+++++ .++.++... ..+++|
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~N-~l~~lp~~l----~~l~~L 265 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT--PHLRELHLNNN-KLVKVPGGL----ADHKYI 265 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS--TTCCEEECCSS-CCSSCCTTT----TTCSSC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC--CCCCEEECCCC-cCccCChhh----ccCCCc
Confidence 67777777764333345566677777777777766655555556655 67777777765 355555433 456677
Q ss_pred cEEeecCC
Q 039126 234 QSFDFINC 241 (295)
Q Consensus 234 ~~L~l~~c 241 (295)
++|+++++
T Consensus 266 ~~L~l~~N 273 (330)
T 1xku_A 266 QVVYLHNN 273 (330)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 77777665
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=4.5e-22 Score=169.40 Aligned_cols=214 Identities=19% Similarity=0.183 Sum_probs=94.8
Q ss_pred eEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcC
Q 039126 20 SPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRS 98 (295)
Q Consensus 20 ~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 98 (295)
+++.+++.++.+|..+ .++|++|++++|.+.+..+ .+..+++|++|++++|......+..+..+++|++|++++|..
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 3444444444444322 2344444444444333222 244444455555444322222233344444455555544433
Q ss_pred CceeCC-cc-cCccccEEeccCCCCCcccCcC---CCCCceEEccCccccccchh-hhCCCCCcEEecCCCcCCcCcc-c
Q 039126 99 LTNLST-SI-HLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSSRLEGLP-S 171 (295)
Q Consensus 99 l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~~~p-~ 171 (295)
++.++. .+ .+++|+.|++++|.+.+..+.. +.+|++|++++|.++.++.. ++.+++|+.|++++|. +..+| .
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 171 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPER 171 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHH
Confidence 333322 11 2444555555544433222222 22444555555555544332 4455555555555552 33332 2
Q ss_pred ccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126 172 KICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 172 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
.+.++++|++|++++|.+.+..|..+..+ ++|++|+++++ .++.++... ...+++|++|++++++
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDL--GRLMTLYLFAN-NLSALPTEA---LAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTC--TTCCEEECCSS-CCSCCCHHH---HTTCTTCCEEECCSSC
T ss_pred HhcCccccCEEECCCCcccccCHhHccCc--ccccEeeCCCC-cCCcCCHHH---cccCcccCEEeccCCC
Confidence 35555555555555555544445555544 55555555554 233333211 1345555555555554
No 14
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=3.6e-22 Score=173.73 Aligned_cols=225 Identities=14% Similarity=0.125 Sum_probs=148.7
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
+..+..+|..+ .++++.|++++|.+..++ ..++++++|++|++++|.+.+..| .+..+++|++|++++| .++.+|.
T Consensus 42 ~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~ 119 (332)
T 2ft3_A 42 DLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPP 119 (332)
T ss_dssp SSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCS
T ss_pred CCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCc
Confidence 34556666543 467888888888888774 467888888888888888766555 5788888888888885 4556665
Q ss_pred chhcccCCcEEccccCcCCceeCCc-c-cCccccEEeccCCCCCc--ccCcCCC--CCceEEccCccccccchhhhCCCC
Q 039126 81 SIRHLNKFVARNLKHCRSLTNLSTS-I-HLESLKKLILSGCSNLM--SFPELFY--NIKELSLDGTAINELPSSIEYLSK 154 (295)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~--~~~~~~~--~L~~L~l~~~~i~~~~~~~~~~~~ 154 (295)
.+. ++|++|++++| .++.++.. + .+++|+.|++++|.... ..+..+. +|++|++++|.++.+|..+. ++
T Consensus 120 ~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~ 194 (332)
T 2ft3_A 120 NLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ET 194 (332)
T ss_dssp SCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SS
T ss_pred ccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CC
Confidence 443 67888888774 34455543 2 37788888888776532 2333333 56677777777776665432 56
Q ss_pred CcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCccc
Q 039126 155 LVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQ 234 (295)
Q Consensus 155 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~ 234 (295)
|+.|++++|......+..+.++++|++|++++|.+.+..+..+..+ ++|++|+++++ .++.++... ..+++|+
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N-~l~~lp~~l----~~l~~L~ 267 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL--PTLRELHLDNN-KLSRVPAGL----PDLKLLQ 267 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC--TTCCEEECCSS-CCCBCCTTG----GGCTTCC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC--CCCCEEECCCC-cCeecChhh----hcCccCC
Confidence 7777777764433344566777777777777776665555566665 77777777765 355555533 4667777
Q ss_pred EEeecCC
Q 039126 235 SFDFINC 241 (295)
Q Consensus 235 ~L~l~~c 241 (295)
+|+++++
T Consensus 268 ~L~l~~N 274 (332)
T 2ft3_A 268 VVYLHTN 274 (332)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 7777765
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=7.4e-23 Score=192.90 Aligned_cols=224 Identities=13% Similarity=0.184 Sum_probs=161.2
Q ss_pred cCCCCCCCCCceeEecCCCCccccchhhcCCCC-CcEEecCCCCCCCcCC-CCCCC--CCCcEeeccccccccccccchh
Q 039126 8 SLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVN-LKSINLNHSEHLTEIP-SLSLA--TNLESLNFQRYTSLLETHSSIR 83 (295)
Q Consensus 8 ~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~-L~~L~L~~~~~~~~~~-~~~~l--~~L~~L~l~~~~~~~~~~~~~~ 83 (295)
.+|.+..+++|+.|++++|.+..+|..+..+++ |++|++++|.+. .+| .+..+ ++|++|++++|......|..+.
T Consensus 345 ~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp ECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred chhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 344222355555555555555555555666666 666666666654 555 23333 3677777777655555555555
Q ss_pred -------cccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCcCCC-----------CCceEEccCcccc
Q 039126 84 -------HLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPELFY-----------NIKELSLDGTAIN 143 (295)
Q Consensus 84 -------~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~-----------~L~~L~l~~~~i~ 143 (295)
.+++|++|++++| .++.+|... .+++|+.|++++|.+. .+|.... +|++|++++|.++
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred ccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC
Confidence 6667888888774 444666554 2788999999998755 6665432 7889999999999
Q ss_pred ccchhhh--CCCCCcEEecCCCcCCcCcccccCCCCCCCeeec------cCCCCCCCchhhhhccCCCCcceeecccccc
Q 039126 144 ELPSSIE--YLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNL------SCCSNLESFPNELRNLFPCDLYDIEAHWCSS 215 (295)
Q Consensus 144 ~~~~~~~--~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l------~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 215 (295)
.+|..+. .+++|+.|++++|. +..+|..+.++++|++|++ ++|.+.+.+|..+..+ ++|++|++++|.
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l--~~L~~L~Ls~N~- 577 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC--PSLTQLQIGSND- 577 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC--SSCCEEECCSSC-
T ss_pred ccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC--CCCCEEECCCCc-
Confidence 9998887 89999999999985 4458988999999999999 4567788899999888 999999999975
Q ss_pred cccccccchhhhccCCcccEEeecCCCCC
Q 039126 216 LETLSGLSIIFTKISRNTQSFDFINCFKL 244 (295)
Q Consensus 216 l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 244 (295)
++.+|.. ..++|++|++++|+-.
T Consensus 578 l~~ip~~------~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 578 IRKVNEK------ITPNISVLDIKDNPNI 600 (636)
T ss_dssp CCBCCSC------CCTTCCEEECCSCTTC
T ss_pred CCccCHh------HhCcCCEEECcCCCCc
Confidence 5888873 3489999999998643
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=9.4e-22 Score=184.29 Aligned_cols=177 Identities=24% Similarity=0.171 Sum_probs=93.2
Q ss_pred CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-hhcccCCcEE
Q 039126 14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS-IRHLNKFVAR 91 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L 91 (295)
.+++|++|++++|.++.+|..++.+++|++|++++|.+.+..| .+..+++|++|++++|.....++.. +..+++|++|
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 4667777777777777777666777777777777776554444 4566666666666665544444433 5556666666
Q ss_pred ccccCcCCcee--CCcc-cCccccEEeccCCCCCcccCcCC---CCCceEEccCcccccc-c-hhhhCCCCCcEEecCCC
Q 039126 92 NLKHCRSLTNL--STSI-HLESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINEL-P-SSIEYLSKLVILNLGNS 163 (295)
Q Consensus 92 ~l~~~~~l~~l--~~~~-~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~-~-~~~~~~~~L~~L~l~~~ 163 (295)
++++|...... +..+ .+++|+.|++++|...+..|..+ .+|++|++++|.+... + ..+..+++|+.|++++|
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 66654322221 2222 25555555555554433333322 2444555555554422 1 22444555555555554
Q ss_pred cCCcCcccccCCCCCCCeeeccCCCCC
Q 039126 164 SRLEGLPSKICKLKSLQHLNLSCCSNL 190 (295)
Q Consensus 164 ~~~~~~p~~l~~l~~L~~L~l~~~~~~ 190 (295)
......|..++++++|++|++++|.+.
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 333333444444555555555554443
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=8.1e-22 Score=179.65 Aligned_cols=231 Identities=17% Similarity=0.209 Sum_probs=143.9
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
+..+..+|..+ .++++.|++++|.++.++ ..+.++++|++|++++|.+.+..| .+..+++|++|++++| .+..+|.
T Consensus 20 ~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 97 (477)
T 2id5_A 20 RKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPL 97 (477)
T ss_dssp SCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCT
T ss_pred CCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCc
Confidence 34556666533 467888888888888764 567888888888888887766656 5888888888888885 4555554
Q ss_pred -chhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCcC---CCCCceEEccCccccccch-hhhCCCC
Q 039126 81 -SIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINELPS-SIEYLSK 154 (295)
Q Consensus 81 -~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~~-~~~~~~~ 154 (295)
.+..+++|++|++++|......+..+ .+++|+.|++++|.+....+.. +.+|++|++++|.++.++. .+..+++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 46778888888888754433333333 3778888888877654443433 3366677777777776654 3566666
Q ss_pred CcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchh------------------------hhhccCCCCcceeec
Q 039126 155 LVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPN------------------------ELRNLFPCDLYDIEA 210 (295)
Q Consensus 155 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~------------------------~l~~~~~~~L~~L~l 210 (295)
|+.|++++|......+..+..+++|+.|++++|...+.++. .+..+ ++|++|++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L 255 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNL 255 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC--TTCCEEEC
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc--cccCeeEC
Confidence 66666666643333334455555555555555544444433 34444 56666666
Q ss_pred ccccccccccccchhhhccCCcccEEeecCC
Q 039126 211 HWCSSLETLSGLSIIFTKISRNTQSFDFINC 241 (295)
Q Consensus 211 ~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 241 (295)
+++. ++.++... ...+++|++|+++++
T Consensus 256 s~n~-l~~~~~~~---~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 256 SYNP-ISTIEGSM---LHELLRLQEIQLVGG 282 (477)
T ss_dssp CSSC-CCEECTTS---CTTCTTCCEEECCSS
T ss_pred CCCc-CCccChhh---ccccccCCEEECCCC
Confidence 6543 34433321 135566666666654
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=8.1e-22 Score=178.46 Aligned_cols=111 Identities=16% Similarity=0.050 Sum_probs=71.2
Q ss_pred CCceEEccCcccccc-chhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceee
Q 039126 131 NIKELSLDGTAINEL-PSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIE 209 (295)
Q Consensus 131 ~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~ 209 (295)
+|++|++++|.++.+ +..++.+++|+.|++++|......|..+.++++|++|++++|.+.+..|..+..+ ++|++|+
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~ 377 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL--PNLKELA 377 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC--TTCCEEE
T ss_pred CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc--ccccEEE
Confidence 455666666666644 3456666777777777764433345566777777777777777666666666666 7777777
Q ss_pred cccccccccccccchhhhccCCcccEEeecCCCCChhh
Q 039126 210 AHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQN 247 (295)
Q Consensus 210 l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 247 (295)
++++ .++.++... ...+++|++|++++++--.+.
T Consensus 378 L~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 378 LDTN-QLKSVPDGI---FDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CCSS-CCSCCCTTT---TTTCTTCCEEECCSSCBCCCT
T ss_pred CCCC-ccccCCHhH---hccCCcccEEEccCCCcccCC
Confidence 7775 356555422 146778888888776544443
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.3e-21 Score=183.27 Aligned_cols=238 Identities=15% Similarity=0.097 Sum_probs=141.0
Q ss_pred CCCCCcCCCCC-CCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeecccccccccc
Q 039126 3 GCPFKSLSSII-RPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLET 78 (295)
Q Consensus 3 ~~~~~~~p~~~-~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~ 78 (295)
+..+.++|..+ .+++|++|++++|.+..+ |..++.+++|++|++++|.+.+.+| .+..+++|++|++++|......
T Consensus 287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred CCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 45677788655 589999999999999876 4677899999999999998876776 3788888888888886544333
Q ss_pred --ccchhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCc----CCCCCceEEccCcccccc-chh--
Q 039126 79 --HSSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAINEL-PSS-- 148 (295)
Q Consensus 79 --~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~-~~~-- 148 (295)
+..+..+++|++|++++|......+..+ .+++|+.|++++|...+..+. .+.+|++|++++|.++.. +..
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence 4557777788888887754333323322 255566666665543332221 123444555555544422 333
Q ss_pred -------------------------hhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCC
Q 039126 149 -------------------------IEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPC 203 (295)
Q Consensus 149 -------------------------~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~ 203 (295)
+..+++|+.|++++|......|..+.++++|++|++++|.+.+..|..+..+ +
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l--~ 524 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL--K 524 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC--C
T ss_pred CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc--c
Confidence 4444555555555553333334445555555555555555555555555554 5
Q ss_pred CcceeecccccccccccccchhhhccCCcccEEeecCCCCChhh
Q 039126 204 DLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQN 247 (295)
Q Consensus 204 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 247 (295)
+| +|+++++. ++.++... ...+++|+.+++++++-..+.
T Consensus 525 ~L-~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 525 GI-YLNLASNH-ISIILPSL---LPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp SC-EEECCSSC-CCCCCGGG---HHHHHTSSEEECTTCCEECSG
T ss_pred cc-EEECcCCc-ccccCHhh---cccCCCCCEEeCCCCCccccC
Confidence 55 55555543 33333211 134566666666666543333
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2.9e-22 Score=178.09 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=53.3
Q ss_pred CCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-hhcccCCcEE
Q 039126 15 PKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS-IRHLNKFVAR 91 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L 91 (295)
+++|++|++++|.+..++. .++.+++|++|++++|.+.+..| .+..+++|++|++++| .++.+|.. +..+++|++|
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEE
Confidence 5556666666665555542 45556666666666665544434 2555666666666553 33344433 3555566666
Q ss_pred ccccCcCCceeCCc-c-cCccccEEeccCCC
Q 039126 92 NLKHCRSLTNLSTS-I-HLESLKKLILSGCS 120 (295)
Q Consensus 92 ~l~~~~~l~~l~~~-~-~~~~L~~L~l~~~~ 120 (295)
++++|. ++.++.. + .+++|+.|++++|.
T Consensus 147 ~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 147 SMSNNN-LERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp ECCSSC-CCBCCTTTTSSCTTCCEEECCSSC
T ss_pred ECCCCc-cCccChhhccCCCCCCEEECCCCc
Confidence 665543 2222221 2 24555555555543
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.1e-21 Score=178.76 Aligned_cols=224 Identities=20% Similarity=0.179 Sum_probs=154.5
Q ss_pred CCCCceeEecCCCCccccchh-hcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126 14 RPKNLVSPEIPRNSIKQLWKV-VQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVAR 91 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 91 (295)
.+++|++|+|++|.+..+|.. +.++++|++|++++|.+.+..+ .+..+++|++|++++|......+..+..+++|+.|
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 467777777777777666543 4666777777777766555444 35666666666666643333333344455555555
Q ss_pred ccccCc-----------------------CCceeCC-cc-cCccccEEeccCCCCCcccCcCCC---CCceEEccCcccc
Q 039126 92 NLKHCR-----------------------SLTNLST-SI-HLESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAIN 143 (295)
Q Consensus 92 ~l~~~~-----------------------~l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~ 143 (295)
++++|. .+..++. .+ .+++|+.|++++|...+.+|.... +|++|++++|.++
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 555432 2222222 12 266777777777766666655332 7889999999999
Q ss_pred ccch-hhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccccccccccc
Q 039126 144 ELPS-SIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGL 222 (295)
Q Consensus 144 ~~~~-~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~ 222 (295)
.+|. .+..+++|+.|++++|......+..+.++++|+.|++++|.+.+..|..+..+ ++|++|+++++ .++.++..
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~N-~l~~~~~~ 314 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL--NYLRVLNVSGN-QLTTLEES 314 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC--TTCCEEECCSS-CCSCCCGG
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc--ccCCEEECCCC-cCceeCHh
Confidence 8874 57889999999999986544445678899999999999999888888888888 99999999996 56776653
Q ss_pred chhhhccCCcccEEeecCCCC
Q 039126 223 SIIFTKISRNTQSFDFINCFK 243 (295)
Q Consensus 223 ~~~~~~~~~~L~~L~l~~c~~ 243 (295)
.. ..+++|++|++++++-
T Consensus 315 ~~---~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 315 VF---HSVGNLETLILDSNPL 332 (477)
T ss_dssp GB---SCGGGCCEEECCSSCE
T ss_pred Hc---CCCcccCEEEccCCCc
Confidence 21 5789999999998764
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=2.2e-21 Score=169.53 Aligned_cols=229 Identities=20% Similarity=0.260 Sum_probs=150.3
Q ss_pred CCCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccc
Q 039126 2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSS 81 (295)
Q Consensus 2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (295)
.+..+.++|.+..+++|++|++++|.+++++. +..+++|++|++++|.+. .++.+..+++|++|++++|. +..++.
T Consensus 52 ~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~~~~~l~~L~~L~l~~n~-i~~~~~- 127 (347)
T 4fmz_A 52 AGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDN-ISDISP- 127 (347)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEECTTSC-CCCCGG-
T ss_pred eCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc-CchHHcCCCcCCEEECcCCc-ccCchh-
Confidence 35566777776678889999999888888776 888888999998888753 45678888888888888854 444443
Q ss_pred hhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccC-cCCCCCceEEccCccc------------------
Q 039126 82 IRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFP-ELFYNIKELSLDGTAI------------------ 142 (295)
Q Consensus 82 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~i------------------ 142 (295)
+..+++|+.|++++|......+....+++|++|++++|......+ ..+.+|++|++++|.+
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence 677777888888777666655543345666666666554322111 1233444555555444
Q ss_pred ----cccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccccccc
Q 039126 143 ----NELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLET 218 (295)
Q Consensus 143 ----~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~ 218 (295)
..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.+.+ + ..+..+ ++|++|++++| .++.
T Consensus 208 ~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l--~~L~~L~l~~n-~l~~ 279 (347)
T 4fmz_A 208 VNQITDITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQISD-I-NAVKDL--TKLKMLNVGSN-QISD 279 (347)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTC--TTCCEEECCSS-CCCC
T ss_pred cCCCCCCch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccCC-C-hhHhcC--CCcCEEEccCC-ccCC
Confidence 43333 5566677777777763 444444 6777788888888776544 3 345555 78888888876 4555
Q ss_pred ccccchhhhccCCcccEEeecCCCCChhhh
Q 039126 219 LSGLSIIFTKISRNTQSFDFINCFKLHQNV 248 (295)
Q Consensus 219 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 248 (295)
++. ...+++|++|++++|. ++...
T Consensus 280 ~~~-----~~~l~~L~~L~L~~n~-l~~~~ 303 (347)
T 4fmz_A 280 ISV-----LNNLSQLNSLFLNNNQ-LGNED 303 (347)
T ss_dssp CGG-----GGGCTTCSEEECCSSC-CCGGG
T ss_pred Chh-----hcCCCCCCEEECcCCc-CCCcC
Confidence 542 2577888888888884 44443
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.6e-22 Score=186.94 Aligned_cols=216 Identities=13% Similarity=0.072 Sum_probs=108.8
Q ss_pred CCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-hhcccCCcEE
Q 039126 15 PKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS-IRHLNKFVAR 91 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L 91 (295)
+++|++|++++|.+..++ ..++.+++|++|++++|.+.+..| .+..+++|++|++++| .+..+|.. +..+++|++|
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEE
Confidence 555555555555555543 245555555555555555444333 2455555555555553 23334333 3555555555
Q ss_pred ccccCcCCceeCCcc-cCccccEEeccCCCCCcccC--------------------------------------------
Q 039126 92 NLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFP-------------------------------------------- 126 (295)
Q Consensus 92 ~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~-------------------------------------------- 126 (295)
++++|......+..+ .+++|+.|++++|.+.+.-+
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~ 232 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 232 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence 555542222222112 24445555554443221100
Q ss_pred ------------------cCCCCCceEEccCcccccc-chhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCC
Q 039126 127 ------------------ELFYNIKELSLDGTAINEL-PSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCC 187 (295)
Q Consensus 127 ------------------~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 187 (295)
..+++|++|++++|.++.+ |..++.+++|+.|++++| .+..+|..+..+++|+.|++++|
T Consensus 233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC
Confidence 0122444555555555432 444555555666666555 33444555555666666666665
Q ss_pred CCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126 188 SNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 188 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
.+. .+|..+..+ ++|++|++++|. ++.++. ..+++|+.|++++++
T Consensus 312 ~l~-~i~~~~~~l--~~L~~L~L~~N~-l~~~~~------~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 312 HLL-HVERNQPQF--DRLENLYLDHNS-IVTLKL------STHHTLKNLTLSHND 356 (597)
T ss_dssp CCC-CCGGGHHHH--TTCSEEECCSSC-CCCCCC------CTTCCCSEEECCSSC
T ss_pred CCC-ccCcccccC--CCCCEEECCCCC-CCCcCh------hhcCCCCEEEeeCCC
Confidence 543 455555555 666666666653 444443 456677777777764
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=2.5e-21 Score=169.16 Aligned_cols=226 Identities=19% Similarity=0.214 Sum_probs=135.3
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccccccc--
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHS-- 80 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-- 80 (295)
++.+.+++.+..+++|++|++++|.++.++ .+..+++|++|++++|.+. ..+.+..+++|++|++++|.....++.
T Consensus 75 ~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 152 (347)
T 4fmz_A 75 GNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLSPLS 152 (347)
T ss_dssp SSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCGGGT
T ss_pred CCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc-CchhhccCCceeEEECCCCCCcccccchh
Confidence 345555555445777777777777666654 4666777777777776643 333355666666666666544433332
Q ss_pred -------------------chhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCccc-CcCCCCCceEEccCc
Q 039126 81 -------------------SIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSF-PELFYNIKELSLDGT 140 (295)
Q Consensus 81 -------------------~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~ 140 (295)
.+..+++|+.|++++| .++.++....+++|+.+++++|...... ...+.+|++|++++|
T Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN-QIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN 231 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred hCCCCcEEEecCCCcCCchhhccCCCCCEEEccCC-cccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC
Confidence 1334444445544443 2223332223455555555555432211 123457788888888
Q ss_pred cccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccccccccc
Q 039126 141 AINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLS 220 (295)
Q Consensus 141 ~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 220 (295)
.++.++. +..+++|+.|++++| .+..++ .+..+++|++|++++|.+.+ + ..+..+ ++|++|++++|. ++...
T Consensus 232 ~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n~l~~-~-~~~~~l--~~L~~L~L~~n~-l~~~~ 303 (347)
T 4fmz_A 232 KITDLSP-LANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSNQISD-I-SVLNNL--SQLNSLFLNNNQ-LGNED 303 (347)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCC-C-GGGGGC--TTCSEEECCSSC-CCGGG
T ss_pred ccCCCcc-hhcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCCccCC-C-hhhcCC--CCCCEEECcCCc-CCCcC
Confidence 8887766 777888888888887 344453 47778888888888876544 3 345555 888888888775 34333
Q ss_pred ccchhhhccCCcccEEeecCCC
Q 039126 221 GLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 221 ~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
... ...+++|++|++++|+
T Consensus 304 ~~~---l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 304 MEV---IGGLTNLTTLFLSQNH 322 (347)
T ss_dssp HHH---HHTCTTCSEEECCSSS
T ss_pred hhH---hhccccCCEEEccCCc
Confidence 211 1467888888888875
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=4.6e-21 Score=166.54 Aligned_cols=233 Identities=16% Similarity=0.183 Sum_probs=181.3
Q ss_pred CCCCCcCCC--CCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccc
Q 039126 3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLET 78 (295)
Q Consensus 3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~ 78 (295)
+..+..++. +..+++|++|++++|.+..+ |..++.+++|++|++++|.+. .+| .+. ++|++|++++|......
T Consensus 61 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~ 137 (330)
T 1xku_A 61 NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVR 137 (330)
T ss_dssp SSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBC
T ss_pred CCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccC
Confidence 455667765 34699999999999999987 778999999999999999865 566 333 79999999997554444
Q ss_pred ccchhcccCCcEEccccCcCCc--eeCCcc-cCccccEEeccCCCCCcccCcCC-CCCceEEccCcccccc-chhhhCCC
Q 039126 79 HSSIRHLNKFVARNLKHCRSLT--NLSTSI-HLESLKKLILSGCSNLMSFPELF-YNIKELSLDGTAINEL-PSSIEYLS 153 (295)
Q Consensus 79 ~~~~~~l~~L~~L~l~~~~~l~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~-~~~~~~~~ 153 (295)
+..+..+++|+.|++++|..-. ..+..+ .+++|+.|++++|.+ ..+|..+ .+|++|++++|.++.+ +..+..++
T Consensus 138 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCccccccCCEEECCCCcCCccCHHHhcCCC
Confidence 4568899999999999965432 333333 489999999999864 4566543 5899999999999866 56788999
Q ss_pred CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhh---hccC
Q 039126 154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIF---TKIS 230 (295)
Q Consensus 154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~ 230 (295)
+|+.|++++|......+..+..+++|++|++++|.+. .+|..+..+ ++|++|+++++. ++.++...... ....
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l--~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~ 292 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH--KYIQVVYLHNNN-ISAIGSNDFCPPGYNTKK 292 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC--SSCCEEECCSSC-CCCCCTTSSSCSSCCTTS
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC--CCcCEEECCCCc-CCccChhhcCCccccccc
Confidence 9999999998654444557889999999999998765 788888887 999999999864 67776532210 1135
Q ss_pred CcccEEeecCCCC
Q 039126 231 RNTQSFDFINCFK 243 (295)
Q Consensus 231 ~~L~~L~l~~c~~ 243 (295)
++++.+++.+++-
T Consensus 293 ~~l~~l~l~~N~~ 305 (330)
T 1xku_A 293 ASYSGVSLFSNPV 305 (330)
T ss_dssp CCCSEEECCSSSS
T ss_pred ccccceEeecCcc
Confidence 7889999998874
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=1.1e-21 Score=189.35 Aligned_cols=216 Identities=14% Similarity=0.196 Sum_probs=122.8
Q ss_pred CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCC-CcEeeccccccccccccchhccc--CCc
Q 039126 14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATN-LESLNFQRYTSLLETHSSIRHLN--KFV 89 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~ 89 (295)
.+++|+.|++++|.+..+| .++.+++|+.|++++|.+. .+| .+..+++ |++|++++|. +..+|..+..+. +|+
T Consensus 571 ~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMG 647 (876)
T ss_dssp TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEE
T ss_pred cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCC
Confidence 3555555555555555444 4455555555555555443 344 3444554 5555555533 223443332221 133
Q ss_pred EEccccCcC----------------------------CceeCCcc--cCccccEEeccCCCCCcccCcCCC---------
Q 039126 90 ARNLKHCRS----------------------------LTNLSTSI--HLESLKKLILSGCSNLMSFPELFY--------- 130 (295)
Q Consensus 90 ~L~l~~~~~----------------------------l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~--------- 130 (295)
.|++++|.. ++.+|... .+++|+.|++++|.+. .+|....
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTT
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccc
Confidence 333333221 22233222 2456666666666433 4554321
Q ss_pred --CCceEEccCccccccchhhh--CCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccC------CCCCCCchhhhhcc
Q 039126 131 --NIKELSLDGTAINELPSSIE--YLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSC------CSNLESFPNELRNL 200 (295)
Q Consensus 131 --~L~~L~l~~~~i~~~~~~~~--~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~------~~~~~~~~~~l~~~ 200 (295)
+|++|++++|.++.+|..+. .+++|+.|++++|. +..+|..+..+++|+.|++++ |.+.+.+|..+..+
T Consensus 727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 56677777777777777665 67777777777774 444677777777777777755 55666777777776
Q ss_pred CCCCcceeecccccccccccccchhhhccCCcccEEeecCCCC
Q 039126 201 FPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFK 243 (295)
Q Consensus 201 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 243 (295)
++|+.|++++|. ++.+|.. ..++|+.|++++|+.
T Consensus 806 --~~L~~L~Ls~N~-L~~Ip~~------l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 806 --PSLIQLQIGSND-IRKVDEK------LTPQLYILDIADNPN 839 (876)
T ss_dssp --SSCCEEECCSSC-CCBCCSC------CCSSSCEEECCSCTT
T ss_pred --CCCCEEECCCCC-CCccCHh------hcCCCCEEECCCCCC
Confidence 778888887765 4666662 336788888888763
No 27
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=2.3e-22 Score=176.44 Aligned_cols=236 Identities=19% Similarity=0.152 Sum_probs=181.4
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
+..++++|..+ .++|++|++++|.++.++. .++++++|++|++++|.+.+..+ .+..+++|++|++++| .++.++.
T Consensus 40 ~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 117 (353)
T 2z80_A 40 SGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSS 117 (353)
T ss_dssp STTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCH
T ss_pred CCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCH
Confidence 34566777633 3589999999999998875 78999999999999998776666 5899999999999996 4556665
Q ss_pred c-hhcccCCcEEccccCcCCceeCC--cc-cCccccEEeccCCCCCcccC-cCC---CCCceEEccCcccccc-chhhhC
Q 039126 81 S-IRHLNKFVARNLKHCRSLTNLST--SI-HLESLKKLILSGCSNLMSFP-ELF---YNIKELSLDGTAINEL-PSSIEY 151 (295)
Q Consensus 81 ~-~~~l~~L~~L~l~~~~~l~~l~~--~~-~~~~L~~L~l~~~~~~~~~~-~~~---~~L~~L~l~~~~i~~~-~~~~~~ 151 (295)
. +..+++|++|++++| .++.++. .+ .+++|++|++++|...+.++ ..+ .+|++|++++|.++.+ |..++.
T Consensus 118 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 4 889999999999985 5556665 23 48999999999986555553 333 4667889999998855 777888
Q ss_pred CCCCcEEecCCCcCCcCcccc-cCCCCCCCeeeccCCCCCCC-------------------------------chhhhhc
Q 039126 152 LSKLVILNLGNSSRLEGLPSK-ICKLKSLQHLNLSCCSNLES-------------------------------FPNELRN 199 (295)
Q Consensus 152 ~~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~~-------------------------------~~~~l~~ 199 (295)
+++|++|++++|. +..+|.. +..+++|++|++++|.+.+. +|..+..
T Consensus 197 l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~ 275 (353)
T 2z80_A 197 IQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275 (353)
T ss_dssp CSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred cccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence 8999999999885 5556543 34578888888888876552 4556667
Q ss_pred cCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChhhh
Q 039126 200 LFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNV 248 (295)
Q Consensus 200 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 248 (295)
+ ++|++|+++++ .++.++.... ..+++|++|++++++-..+.+
T Consensus 276 l--~~L~~L~Ls~N-~l~~i~~~~~---~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 276 I--SGLLELEFSRN-QLKSVPDGIF---DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp C--TTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSCBCCCHH
T ss_pred c--cCCCEEECCCC-CCCccCHHHH---hcCCCCCEEEeeCCCccCcCC
Confidence 6 99999999997 5677776421 578999999999997655543
No 28
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=4.4e-21 Score=163.25 Aligned_cols=210 Identities=17% Similarity=0.082 Sum_probs=171.8
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccc-c
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLET-H 79 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~ 79 (295)
+..++.+|.. ..+++++|++++|.++.++ ..++.+++|++|++++|.+.+..| .+..+++|++|++++|..++.+ +
T Consensus 20 ~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 20 QQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred cCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 3456667643 3679999999999999887 568999999999999998876656 6999999999999998756666 5
Q ss_pred cchhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccch-hhhCCCC
Q 039126 80 SSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPS-SIEYLSK 154 (295)
Q Consensus 80 ~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~-~~~~~~~ 154 (295)
..+..+++|++|++++|......+..+ .+++|++|++++|.+....+. .+.+|++|++++|.++.++. .+..+++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 178 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc
Confidence 678999999999999965433334333 489999999999875543333 34588999999999998876 4788999
Q ss_pred CcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccc
Q 039126 155 LVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSS 215 (295)
Q Consensus 155 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 215 (295)
|+.|++++|......|..+.++++|+.|++++|.+.+..+..+..+ ++|++|++++++-
T Consensus 179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL--RALQYLRLNDNPW 237 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC--TTCCEEECCSSCE
T ss_pred cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC--cccCEEeccCCCc
Confidence 9999999997655668889999999999999998887666778887 9999999998753
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=9e-21 Score=168.42 Aligned_cols=225 Identities=16% Similarity=0.132 Sum_probs=152.8
Q ss_pred CCCCCcCCC-C-CCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-C-CCCCCCCcEeeccccccccc
Q 039126 3 GCPFKSLSS-I-IRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-S-LSLATNLESLNFQRYTSLLE 77 (295)
Q Consensus 3 ~~~~~~~p~-~-~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~-~~~l~~L~~L~l~~~~~~~~ 77 (295)
+..+..++. . ..+++|++|++++|.+..++ ..++.+++|++|++++|.+. .+| . +..+++|++|++++|.....
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI 156 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCcc
Confidence 345566654 3 35889999999999888775 45788999999999999865 455 3 68889999999998655444
Q ss_pred cccchhcccCCcEEccccCcCCceeCCcccC----------------------------------------ccccEEecc
Q 039126 78 THSSIRHLNKFVARNLKHCRSLTNLSTSIHL----------------------------------------ESLKKLILS 117 (295)
Q Consensus 78 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~----------------------------------------~~L~~L~l~ 117 (295)
.+..+..+++|++|++++|. ++.++.. .+ ++|+.|+++
T Consensus 157 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 234 (390)
T 3o6n_A 157 EDDTFQATTSLQNLQLSSNR-LTHVDLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 234 (390)
T ss_dssp CTTTTSSCTTCCEEECCSSC-CSBCCGG-GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECC
T ss_pred ChhhccCCCCCCEEECCCCc-CCccccc-cccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECC
Confidence 45567888888888888853 3322211 11 234444444
Q ss_pred CCCCCcccC--cCCCCCceEEccCcccccc-chhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCch
Q 039126 118 GCSNLMSFP--ELFYNIKELSLDGTAINEL-PSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFP 194 (295)
Q Consensus 118 ~~~~~~~~~--~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~ 194 (295)
+|.+.+ .+ ..+++|++|++++|.++.+ |..+..+++|+.|++++| .+..+|..+..+++|++|++++|.+. .+|
T Consensus 235 ~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~ 311 (390)
T 3o6n_A 235 HNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVE 311 (390)
T ss_dssp SSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCCC-CCG
T ss_pred CCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcce-ecC
Confidence 433221 11 1234667777777777644 556777777888888776 45556666677788888888887654 567
Q ss_pred hhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126 195 NELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 195 ~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
..+..+ ++|++|+++++. ++.++. ..+++|++|++++++
T Consensus 312 ~~~~~l--~~L~~L~L~~N~-i~~~~~------~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 312 RNQPQF--DRLENLYLDHNS-IVTLKL------STHHTLKNLTLSHND 350 (390)
T ss_dssp GGHHHH--TTCSEEECCSSC-CCCCCC------CTTCCCSEEECCSSC
T ss_pred cccccc--CcCCEEECCCCc-cceeCc------hhhccCCEEEcCCCC
Confidence 667776 888888888764 566553 577888888888875
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=7.4e-21 Score=178.06 Aligned_cols=205 Identities=14% Similarity=0.106 Sum_probs=149.7
Q ss_pred CCCCCcCCC--CCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeecccccccccc
Q 039126 3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLET 78 (295)
Q Consensus 3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~ 78 (295)
+..+..++. +..+++|+.|+|++|.+..++. .++.+++|++|++++|.+.+..+. +..+++|++|++++|......
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence 344555553 3357788888888888777654 457788888888888876533333 577888888888876544444
Q ss_pred ccchhcccCCcEEccccCcCCceeC-------------------------------------------------------
Q 039126 79 HSSIRHLNKFVARNLKHCRSLTNLS------------------------------------------------------- 103 (295)
Q Consensus 79 ~~~~~~l~~L~~L~l~~~~~l~~l~------------------------------------------------------- 103 (295)
|..+..+++|++|++++|.. +.++
T Consensus 164 ~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n 242 (597)
T 3oja_B 164 DDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 242 (597)
T ss_dssp TTTTTTCTTCCEEECTTSCC-SBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSS
T ss_pred hhhhhcCCcCcEEECcCCCC-CCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCC
Confidence 45577777777777776532 1111
Q ss_pred ------CcccCccccEEeccCCCCCcccCcCC---CCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccC
Q 039126 104 ------TSIHLESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKIC 174 (295)
Q Consensus 104 ------~~~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~ 174 (295)
....+++|+.|++++|.+.+..|..+ .+|++|++++|.++.+|..++.+++|+.|++++| .+..+|..+.
T Consensus 243 ~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~ 321 (597)
T 3oja_B 243 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQP 321 (597)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHH
T ss_pred CCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccc
Confidence 01136788889999988766666654 4788999999999999988888999999999998 4667888889
Q ss_pred CCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126 175 KLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS 214 (295)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 214 (295)
.+++|++|++++|.+.+. + +..+ ++|++|++++++
T Consensus 322 ~l~~L~~L~L~~N~l~~~-~--~~~~--~~L~~L~l~~N~ 356 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTL-K--LSTH--HTLKNLTLSHND 356 (597)
T ss_dssp HHTTCSEEECCSSCCCCC-C--CCTT--CCCSEEECCSSC
T ss_pred cCCCCCEEECCCCCCCCc-C--hhhc--CCCCEEEeeCCC
Confidence 999999999999987654 3 4444 899999999865
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=3e-21 Score=180.89 Aligned_cols=233 Identities=20% Similarity=0.175 Sum_probs=141.3
Q ss_pred CCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccc--cccch
Q 039126 5 PFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLE--THSSI 82 (295)
Q Consensus 5 ~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~ 82 (295)
.+..+|.+..+++|++|++++|.+..+| .+ .+++|+.|++++|...+.. .+..+++|++|++++|..... .+..+
T Consensus 296 ~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 372 (606)
T 3vq2_A 296 SIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSD 372 (606)
T ss_dssp CCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred cchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhh
Confidence 4455554445667777777777666666 33 5666666666666433322 344555666666655432211 13344
Q ss_pred hcccCCcEEccccCcCCceeCCc-------------------------c-cCccccEEeccCCCCCcccCcCC---CCCc
Q 039126 83 RHLNKFVARNLKHCRSLTNLSTS-------------------------I-HLESLKKLILSGCSNLMSFPELF---YNIK 133 (295)
Q Consensus 83 ~~l~~L~~L~l~~~~~l~~l~~~-------------------------~-~~~~L~~L~l~~~~~~~~~~~~~---~~L~ 133 (295)
..+++|++|++++|. ++.++.. + .+++|+.|++++|...+..|..+ .+|+
T Consensus 373 ~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp HCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 445555555554432 2222211 1 25566666666665544444433 3566
Q ss_pred eEEccCccccc--cchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecc
Q 039126 134 ELSLDGTAINE--LPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAH 211 (295)
Q Consensus 134 ~L~l~~~~i~~--~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~ 211 (295)
+|++++|.++. +|..++.+++|+.|++++|...+..|..+.++++|++|++++|.+.+..|..+..+ ++|++|+++
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~l~ 529 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL--YSLSTLDCS 529 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC--TTCCEEECT
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC--CcCCEEECC
Confidence 77777777764 56667777888888888775555556667788888888888887777777777777 888888888
Q ss_pred cccccccccccchhhhccCC-cccEEeecCCCCChhhh
Q 039126 212 WCSSLETLSGLSIIFTKISR-NTQSFDFINCFKLHQNV 248 (295)
Q Consensus 212 ~~~~l~~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~ 248 (295)
+|. ++.++..+ ..++ +|++|++++++-..+..
T Consensus 530 ~N~-l~~~p~~~----~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 530 FNR-IETSKGIL----QHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TSC-CCCEESCG----GGSCTTCCEEECCSCCCCCSST
T ss_pred CCc-CcccCHhH----hhhcccCcEEEccCCCcccCCc
Confidence 764 66776643 3454 58888888876554443
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=9.3e-21 Score=164.76 Aligned_cols=233 Identities=17% Similarity=0.137 Sum_probs=177.7
Q ss_pred CCCCCcCCC--CCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccc
Q 039126 3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLET 78 (295)
Q Consensus 3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~ 78 (295)
+..+..++. +..+++|++|++++|.++.+ |..++++++|++|++++|.+. .+| .+. ++|++|++++|. +..+
T Consensus 63 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~-i~~~ 138 (332)
T 2ft3_A 63 NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNR-IRKV 138 (332)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSC-CCCC
T ss_pred CCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCc-cCcc
Confidence 345666654 34699999999999999987 678899999999999999865 555 333 899999999965 4455
Q ss_pred c-cchhcccCCcEEccccCcCCc--eeCCcccCccccEEeccCCCCCcccCcCC-CCCceEEccCccccccc-hhhhCCC
Q 039126 79 H-SSIRHLNKFVARNLKHCRSLT--NLSTSIHLESLKKLILSGCSNLMSFPELF-YNIKELSLDGTAINELP-SSIEYLS 153 (295)
Q Consensus 79 ~-~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~-~~~~~~~ 153 (295)
+ ..+..+++|+.|++++|..-. ..+..+...+|+.|++++|.+. .+|..+ .+|++|++++|.++.++ ..+..++
T Consensus 139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~ 217 (332)
T 2ft3_A 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNELHLDHNKIQAIELEDLLRYS 217 (332)
T ss_dssp CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS-SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCT
T ss_pred CHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC-ccCccccCCCCEEECCCCcCCccCHHHhcCCC
Confidence 5 458899999999999965421 3333333228999999998744 466544 48999999999998765 5688899
Q ss_pred CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhh---hccC
Q 039126 154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIF---TKIS 230 (295)
Q Consensus 154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~ 230 (295)
+|+.|++++|......+..+..+++|++|++++|.+. .+|..+..+ ++|++|+++++ .++.++...... ....
T Consensus 218 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l--~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~ 293 (332)
T 2ft3_A 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL--KLLQVVYLHTN-NITKVGVNDFCPVGFGVKR 293 (332)
T ss_dssp TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC--TTCCEEECCSS-CCCBCCTTSSSCSSCCSSS
T ss_pred CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC--ccCCEEECCCC-CCCccChhHcccccccccc
Confidence 9999999998554444557889999999999998765 788888887 99999999986 467766532110 1125
Q ss_pred CcccEEeecCCCCC
Q 039126 231 RNTQSFDFINCFKL 244 (295)
Q Consensus 231 ~~L~~L~l~~c~~l 244 (295)
++|+.+++.+++..
T Consensus 294 ~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 294 AYYNGISLFNNPVP 307 (332)
T ss_dssp CCBSEEECCSSSSC
T ss_pred ccccceEeecCccc
Confidence 77899999998743
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=6.6e-21 Score=172.71 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=101.5
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccch
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSI 82 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (295)
+..+.++|.+..+++|++|++++|.++.++ ++.+++|++|++++|.+.+ ++ +..+++|++|++++| .++.++ +
T Consensus 51 ~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~-~~~l~~L~~L~L~~N-~l~~l~--~ 123 (457)
T 3bz5_A 51 NSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD-VTPLTKLTYLNCDTN-KLTKLD--V 123 (457)
T ss_dssp SSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECCSS-CCSCCC--C
T ss_pred CCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee-cCCCCcCCEEECCCC-cCCeec--C
Confidence 456666776667888888888888888775 7788888888888887654 33 777778888888775 334443 5
Q ss_pred hcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCccc---------------------C-cCCCCCceEEccCc
Q 039126 83 RHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSF---------------------P-ELFYNIKELSLDGT 140 (295)
Q Consensus 83 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~---------------------~-~~~~~L~~L~l~~~ 140 (295)
..+++|++|++++|. ++.++ ...+++|+.|++++|...+.+ | ..+.+|++|++++|
T Consensus 124 ~~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 124 SQNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTN 201 (457)
T ss_dssp TTCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSS
T ss_pred CCCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCC
Confidence 666777777776643 33332 112444555555444333332 2 11223444444444
Q ss_pred cccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCC
Q 039126 141 AINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLE 191 (295)
Q Consensus 141 ~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~ 191 (295)
.++.++ ++.+++|+.|++++|. +..+| ++.+++|++|++++|.+.+
T Consensus 202 ~l~~~~--l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 202 NITKLD--LNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred cCCeec--cccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCcCCC
Confidence 444432 4445555555555552 33344 4555566666666655444
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=6.5e-21 Score=184.00 Aligned_cols=215 Identities=13% Similarity=0.161 Sum_probs=134.9
Q ss_pred CCCCceeEecCCCCccccch--hhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccC-CcE
Q 039126 14 RPKNLVSPEIPRNSIKQLWK--VVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNK-FVA 90 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~ 90 (295)
.+++|+.|++++|.+..+|. .++.+++|+.|++++|.+. .+|.+..+++|++|++++|.. ..+|..+..+++ |+.
T Consensus 546 ~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l-~~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEG 623 (876)
T ss_dssp TTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCC-SCCCTTSCEECTTCCE
T ss_pred ccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCcc-ccchHHHhhccccCCE
Confidence 34567777777777777776 7777778888888887765 667777788888888887544 377777788887 888
Q ss_pred EccccCcCCceeCCccc---CccccEEeccCCCCCcccCcCC--------CCCceEEccCccccccchhhh-CCCCCcEE
Q 039126 91 RNLKHCRSLTNLSTSIH---LESLKKLILSGCSNLMSFPELF--------YNIKELSLDGTAINELPSSIE-YLSKLVIL 158 (295)
Q Consensus 91 L~l~~~~~l~~l~~~~~---~~~L~~L~l~~~~~~~~~~~~~--------~~L~~L~l~~~~i~~~~~~~~-~~~~L~~L 158 (295)
|++++|. ++.+|..+. .++|+.|++++|.+.+.+|... .+|+.|++++|.++.+|..+. .+++|+.|
T Consensus 624 L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 624 LGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702 (876)
T ss_dssp EECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred EECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence 8888854 446665443 2347777887776655444211 256677777777776666543 56667777
Q ss_pred ecCCCcCCcCcccccCC--------CCCCCeeeccCCCCCCCchhhhh--ccCCCCcceeecccccccccccccchhhhc
Q 039126 159 NLGNSSRLEGLPSKICK--------LKSLQHLNLSCCSNLESFPNELR--NLFPCDLYDIEAHWCSSLETLSGLSIIFTK 228 (295)
Q Consensus 159 ~l~~~~~~~~~p~~l~~--------l~~L~~L~l~~~~~~~~~~~~l~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 228 (295)
++++|. +..+|..+.. +++|+.|++++|.+. .+|..+. .+ ++|+.|+++++. ++.++... .
T Consensus 703 ~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l--~~L~~L~Ls~N~-L~~lp~~l----~ 773 (876)
T 4ecn_A 703 ILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL--PYLSNMDVSYNC-FSSFPTQP----L 773 (876)
T ss_dssp ECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC--TTCCEEECCSSC-CSSCCCGG----G
T ss_pred ECCCCc-CCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccC--CCcCEEEeCCCC-CCccchhh----h
Confidence 776663 3355544332 126666666665544 5555554 44 666666666543 34444322 3
Q ss_pred cCCcccEEeecC
Q 039126 229 ISRNTQSFDFIN 240 (295)
Q Consensus 229 ~~~~L~~L~l~~ 240 (295)
.+++|+.|++++
T Consensus 774 ~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 774 NSSQLKAFGIRH 785 (876)
T ss_dssp GCTTCCEEECCC
T ss_pred cCCCCCEEECCC
Confidence 555555555554
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.2e-21 Score=183.69 Aligned_cols=201 Identities=19% Similarity=0.180 Sum_probs=164.9
Q ss_pred CCCCCceeEecCCCCcccc---chhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccc-cchhcccCC
Q 039126 13 IRPKNLVSPEIPRNSIKQL---WKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETH-SSIRHLNKF 88 (295)
Q Consensus 13 ~~~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L 88 (295)
..+++|+.|++++|.+..+ +..+..+++|++|++++|.+.+....+..+++|++|++++|...+..+ ..+..+++|
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 3578888888888888765 678899999999999999865433478999999999999976655555 468899999
Q ss_pred cEEccccCcCCceeCCcc-cCccccEEeccCCCCCcc-cCcCC---CCCceEEccCcccccc-chhhhCCCCCcEEecCC
Q 039126 89 VARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMS-FPELF---YNIKELSLDGTAINEL-PSSIEYLSKLVILNLGN 162 (295)
Q Consensus 89 ~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~-~~~~~---~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~ 162 (295)
++|++++|......+..+ .+++|+.|++++|.+.+. +|..+ .+|++|++++|.++.+ |..++.+++|+.|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 999999976555555555 489999999999987663 56554 5788999999999865 56788999999999999
Q ss_pred CcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccc
Q 039126 163 SSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSS 215 (295)
Q Consensus 163 ~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 215 (295)
|......|..+.++++|++|++++|.+. .+|..+..+ |.+|++|++++++-
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l-~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF-PKSLAFFNLTNNSV 557 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS-CTTCCEEECCSCCC
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh-cccCcEEEccCCCc
Confidence 9766666888999999999999998865 788877775 34799999998764
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=2e-21 Score=167.03 Aligned_cols=209 Identities=22% Similarity=0.249 Sum_probs=168.6
Q ss_pred CCCCCcCCCC--CCCCCceeEecCCCCcccc---chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccc
Q 039126 3 GCPFKSLSSI--IRPKNLVSPEIPRNSIKQL---WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLL 76 (295)
Q Consensus 3 ~~~~~~~p~~--~~~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~ 76 (295)
+..++.+|.. ..+++|++|++++|.+..+ +..+..+++|++|++++|.+. .+| .+..+++|++|++++|. +.
T Consensus 37 ~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~-l~ 114 (306)
T 2z66_A 37 SNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LK 114 (306)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSE-EE
T ss_pred CCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCc-cc
Confidence 4567778864 3699999999999998855 677788999999999999865 455 68899999999999964 44
Q ss_pred ccc--cchhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCc-ccCcCC---CCCceEEccCcccccc-chh
Q 039126 77 ETH--SSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLM-SFPELF---YNIKELSLDGTAINEL-PSS 148 (295)
Q Consensus 77 ~~~--~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~-~~~~~~---~~L~~L~l~~~~i~~~-~~~ 148 (295)
.++ ..+..+++|++|++++|......+..+ .+++|+.|++++|.+.+ .+|..+ .+|++|++++|.++.+ |..
T Consensus 115 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 194 (306)
T 2z66_A 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194 (306)
T ss_dssp SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH
Confidence 444 368899999999999975443444434 48999999999997655 355544 4788999999999976 667
Q ss_pred hhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126 149 IEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS 214 (295)
Q Consensus 149 ~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 214 (295)
+..+++|+.|++++|......+..+..+++|++|++++|.+.+..+..+..+ |++|++|++++++
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~~L~~L~L~~N~ 259 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF-PSSLAFLNLTQND 259 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC-CTTCCEEECTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh-hccCCEEEccCCC
Confidence 8899999999999996544445578899999999999999988888887774 3599999999865
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=1.4e-20 Score=169.77 Aligned_cols=208 Identities=19% Similarity=0.219 Sum_probs=171.6
Q ss_pred CCCCCcCCC--CCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccc
Q 039126 3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLET 78 (295)
Q Consensus 3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~ 78 (295)
+..+..++. +..+++|+.|+|++|.+..++ ..+.++++|++|++++|.+....+ .+..+++|++|++++|. ++.+
T Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~ 151 (440)
T 3zyj_A 73 ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESI 151 (440)
T ss_dssp SCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEE
T ss_pred CCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-cccc
Confidence 345555552 336999999999999999876 678999999999999998765444 48999999999999965 4555
Q ss_pred c-cchhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc--CCCCCceEEccCcccccc-chhhhCC
Q 039126 79 H-SSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINEL-PSSIEYL 152 (295)
Q Consensus 79 ~-~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~-~~~~~~~ 152 (295)
+ ..+..+++|+.|++++|..+..++... .+++|+.|++++|. +..+|. .+.+|++|++++|.++.+ +..+..+
T Consensus 152 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 230 (440)
T 3zyj_A 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230 (440)
T ss_dssp CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhhhccC
Confidence 5 468899999999999988888888754 48999999999986 446664 344889999999999966 6678899
Q ss_pred CCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126 153 SKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS 214 (295)
Q Consensus 153 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 214 (295)
++|+.|++++|......+..+.++++|+.|++++|.+.+..+..+..+ ++|+.|++++++
T Consensus 231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~Np 290 (440)
T 3zyj_A 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL--HHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC--TTCCEEECCSSC
T ss_pred ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc--cCCCEEEcCCCC
Confidence 999999999996555556789999999999999998876666666777 999999999754
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.7e-20 Score=169.93 Aligned_cols=207 Identities=20% Similarity=0.203 Sum_probs=171.0
Q ss_pred CCCCcCC-CCC-CCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc
Q 039126 4 CPFKSLS-SII-RPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH 79 (295)
Q Consensus 4 ~~~~~~p-~~~-~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 79 (295)
..+..++ ..+ .+++|+.|+|++|.+..++ ..+.++++|++|++++|.+....+ .+..+++|++|++++|. ++.++
T Consensus 85 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 163 (452)
T 3zyi_A 85 NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIP 163 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEEC
T ss_pred CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeC
Confidence 4455553 333 6999999999999999876 678999999999999999765555 38999999999999965 45555
Q ss_pred -cchhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc--CCCCCceEEccCcccccc-chhhhCCC
Q 039126 80 -SSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINEL-PSSIEYLS 153 (295)
Q Consensus 80 -~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~-~~~~~~~~ 153 (295)
..+..+++|+.|++++|..++.++... .+++|+.|++++|.+ ..+|. .+.+|++|++++|.++.+ |..+..++
T Consensus 164 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 242 (452)
T 3zyi_A 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242 (452)
T ss_dssp TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccccccccccccEEECcCCcCcccCcccccCcc
Confidence 468899999999999999999988754 489999999999864 45554 345899999999999966 66789999
Q ss_pred CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126 154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS 214 (295)
Q Consensus 154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 214 (295)
+|+.|++++|......|..+.++++|+.|++++|.+.+..+..+..+ ++|+.|++++++
T Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~Np 301 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL--RYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC--TTCCEEECCSSC
T ss_pred CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc--cCCCEEEccCCC
Confidence 99999999996655567789999999999999998776555666666 999999999754
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=3.4e-21 Score=177.31 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=70.5
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
+..++.+|..+. ++|++|++++|.+..++ ..+.++++|++|++++|.+.+..| .+..+++|++|++++| .++.+|.
T Consensus 9 ~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~ 86 (520)
T 2z7x_B 9 KNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISC 86 (520)
T ss_dssp TSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEEC
T ss_pred CCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCc
Confidence 445666665443 77777777777777665 466777777777777777665555 4777777777777774 3445554
Q ss_pred chhcccCCcEEccccCcCCc-eeCCcc-cCccccEEeccCCC
Q 039126 81 SIRHLNKFVARNLKHCRSLT-NLSTSI-HLESLKKLILSGCS 120 (295)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~l~-~l~~~~-~~~~L~~L~l~~~~ 120 (295)
. .+++|++|++++|.... .+|..+ .+++|++|++++|.
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 4 66677777776654322 233333 25555555555543
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=174.11 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=74.0
Q ss_pred CCCCCcCCC--CCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccc-cc
Q 039126 3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLL-ET 78 (295)
Q Consensus 3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~ 78 (295)
+..+..++. +..+++|++|++++|.++.+ |..++++++|++|++++|.+. .+|.. .+++|++|++++|.... .+
T Consensus 30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~ 107 (520)
T 2z7x_B 30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-PTVNLKHLDLSFNAFDALPI 107 (520)
T ss_dssp SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC-CCCCCSEEECCSSCCSSCCC
T ss_pred CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc-ccCCccEEeccCCccccccc
Confidence 345566653 34689999999999999887 678899999999999999865 66755 89999999999976554 46
Q ss_pred ccchhcccCCcEEccccCc
Q 039126 79 HSSIRHLNKFVARNLKHCR 97 (295)
Q Consensus 79 ~~~~~~l~~L~~L~l~~~~ 97 (295)
|..++.+++|++|++++|.
T Consensus 108 p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 108 CKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CGGGGGCTTCCEEEEEESS
T ss_pred hhhhccCCcceEEEecCcc
Confidence 7788889999988888754
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.9e-20 Score=169.68 Aligned_cols=198 Identities=16% Similarity=0.185 Sum_probs=103.4
Q ss_pred CCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccc-------------
Q 039126 5 PFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQR------------- 71 (295)
Q Consensus 5 ~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~------------- 71 (295)
.++.+| +..+++|++|++++|.++.++ ++.+++|++|++++|.+.+ ++ +..+++|++|++++
T Consensus 75 ~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~ 149 (457)
T 3bz5_A 75 NITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTEIDVSHNTQ 149 (457)
T ss_dssp CCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSCCCCTTCTT
T ss_pred cCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccceeccccCCc
Confidence 344443 334555666666666555543 4555555555555555433 22 44444444444444
Q ss_pred --------cccccccccchhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCcccc
Q 039126 72 --------YTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAIN 143 (295)
Q Consensus 72 --------~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~ 143 (295)
|..++.+ .+..+++|+.|++++| .++.++ ...+++|+.|++++|.+.+.-...+.+|++|++++|.++
T Consensus 150 L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 150 LTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp CCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCS
T ss_pred CCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCccc
Confidence 4333333 2445566666666653 344444 223667777777777644332233456778888888877
Q ss_pred ccchhhhCCCCCcEEecCCCcCCcCcc-cccCCCC-------CCCeeeccCCCCCCCchhhhhccCCCCcceeecccccc
Q 039126 144 ELPSSIEYLSKLVILNLGNSSRLEGLP-SKICKLK-------SLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSS 215 (295)
Q Consensus 144 ~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~-------~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 215 (295)
.+| ++.+++|+.|++++|. +..+| ..+.++. +|+.|++++|...+.+|. ..+ ++|+.|++++|..
T Consensus 226 ~ip--~~~l~~L~~L~l~~N~-l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~l--~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 226 EID--VTPLTQLTYFDCSVNP-LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EGC--RKIKELDVTHNTQ 298 (457)
T ss_dssp CCC--CTTCTTCSEEECCSSC-CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TTC--TTCCCCCCTTCTT
T ss_pred ccC--ccccCCCCEEEeeCCc-CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc--ccc--ccCCEEECCCCcc
Confidence 776 6677778888777774 33332 2222222 334444444444444442 222 5555555555543
Q ss_pred ccc
Q 039126 216 LET 218 (295)
Q Consensus 216 l~~ 218 (295)
++.
T Consensus 299 l~~ 301 (457)
T 3bz5_A 299 LYL 301 (457)
T ss_dssp CCE
T ss_pred cce
Confidence 333
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=4.1e-20 Score=171.78 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=71.3
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
+..++.+|... .+++++|++++|.+..++ ..++++++|++|++++|.+.+..| .+..+++|++|++++|. ++.+|.
T Consensus 40 ~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~ 117 (562)
T 3a79_B 40 NRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISC 117 (562)
T ss_dssp TSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECS
T ss_pred CCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCc
Confidence 34566666533 367788888888777765 467777888888888877665555 47777777777777753 445654
Q ss_pred chhcccCCcEEccccCcCCceeC--Ccc-cCccccEEeccCCC
Q 039126 81 SIRHLNKFVARNLKHCRSLTNLS--TSI-HLESLKKLILSGCS 120 (295)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~l~~l~--~~~-~~~~L~~L~l~~~~ 120 (295)
. .+++|++|++++|. ++.++ ..+ .+++|++|++++|.
T Consensus 118 ~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 118 C--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp C--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred c--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc
Confidence 4 66677777776643 33332 222 25555555555554
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=5.2e-20 Score=167.30 Aligned_cols=222 Identities=18% Similarity=0.252 Sum_probs=159.0
Q ss_pred CCCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccc
Q 039126 2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSS 81 (295)
Q Consensus 2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (295)
.+..+..+|.+..+++|++|++++|.+..++. ++.+++|++|++++|.+.+..+ +..+++|++|++++| .++.++.
T Consensus 54 ~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~- 129 (466)
T 1o6v_A 54 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP- 129 (466)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-
T ss_pred CCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-
Confidence 45667778877779999999999999998877 8899999999999998755444 888999999999986 4555553
Q ss_pred hhcccCCcEEccccCcCCceeCCc---------------------ccCccccEEeccCCCCCcccC--cCCCCCceEEcc
Q 039126 82 IRHLNKFVARNLKHCRSLTNLSTS---------------------IHLESLKKLILSGCSNLMSFP--ELFYNIKELSLD 138 (295)
Q Consensus 82 ~~~l~~L~~L~l~~~~~l~~l~~~---------------------~~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~ 138 (295)
+..+++|++|++++|. +..++.. ..+++|+.|++++|... .++ ..+.+|++|+++
T Consensus 130 ~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIAT 207 (466)
T ss_dssp GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECC
T ss_pred HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CChhhccCCCCCEEEec
Confidence 7788888888888753 3333321 13566777777776532 222 234467777777
Q ss_pred CccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccccccc
Q 039126 139 GTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLET 218 (295)
Q Consensus 139 ~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~ 218 (295)
+|.+..++. ++.+++|+.|++++|. +..++ .+..+++|++|++++|.+.+..+ +..+ ++|++|++++|. ++.
T Consensus 208 ~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~l~~n~-l~~ 279 (466)
T 1o6v_A 208 NNQISDITP-LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAP--LSGL--TKLTELKLGANQ-ISN 279 (466)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTC--TTCSEEECCSSC-CCC
T ss_pred CCccccccc-ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccchh--hhcC--CCCCEEECCCCc-cCc
Confidence 777776554 5667788888888774 44444 46778888888888877655443 5555 888888888864 455
Q ss_pred ccccchhhhccCCcccEEeecCCC
Q 039126 219 LSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 219 ~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
++. ...+++|++|++++|.
T Consensus 280 ~~~-----~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 280 ISP-----LAGLTALTNLELNENQ 298 (466)
T ss_dssp CGG-----GTTCTTCSEEECCSSC
T ss_pred ccc-----ccCCCccCeEEcCCCc
Confidence 543 2578889999998874
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=1.8e-20 Score=173.48 Aligned_cols=85 Identities=16% Similarity=0.092 Sum_probs=44.0
Q ss_pred CCCCCcEEecCCCcCCcCcc---cccCCCCCCCeeeccCCCCCCCch--hhhhccCCCCcceeecccccccccccccchh
Q 039126 151 YLSKLVILNLGNSSRLEGLP---SKICKLKSLQHLNLSCCSNLESFP--NELRNLFPCDLYDIEAHWCSSLETLSGLSII 225 (295)
Q Consensus 151 ~~~~L~~L~l~~~~~~~~~p---~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 225 (295)
.+++|+.|++++|...+.+| ..++.+++|++|++++|.+.+..+ ..+..+ ++|++|++++| .++.++...
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l--~~L~~L~Ls~N-~l~~lp~~~-- 406 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL--KNLTSLDISRN-TFHPMPDSC-- 406 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC--TTCCEEECTTC-CCCCCCSCC--
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC--CCCCEEECCCC-CCccCChhh--
Confidence 45556666666654333332 224555666666666655433211 234444 66666666665 345555432
Q ss_pred hhccCCcccEEeecCCC
Q 039126 226 FTKISRNTQSFDFINCF 242 (295)
Q Consensus 226 ~~~~~~~L~~L~l~~c~ 242 (295)
..+++|++|++++|.
T Consensus 407 --~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 407 --QWPEKMRFLNLSSTG 421 (549)
T ss_dssp --CCCTTCCEEECTTSC
T ss_pred --cccccccEEECCCCC
Confidence 345566666666553
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=5.9e-20 Score=155.55 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=70.8
Q ss_pred CCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc
Q 039126 4 CPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS 81 (295)
Q Consensus 4 ~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (295)
..+.++|..+ .+++++|++++|.++.++. .+.++++|++|++++|.+.+..+ .+..+++|++|++++|......+..
T Consensus 17 ~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 17 LNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp SCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 3445555433 3567777777777777654 56777777777777776654444 4777777777777775443333455
Q ss_pred hhcccCCcEEccccCcCCceeCC-cc-cCccccEEeccCCCC
Q 039126 82 IRHLNKFVARNLKHCRSLTNLST-SI-HLESLKKLILSGCSN 121 (295)
Q Consensus 82 ~~~l~~L~~L~l~~~~~l~~l~~-~~-~~~~L~~L~l~~~~~ 121 (295)
+..+++|++|++++|. +..++. .+ .+++|+.|++++|.+
T Consensus 96 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 136 (276)
T 2z62_A 96 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLI 136 (276)
T ss_dssp TTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred hcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCcc
Confidence 6677777777777643 333332 12 255566666655543
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=173.23 Aligned_cols=225 Identities=17% Similarity=0.112 Sum_probs=162.9
Q ss_pred CCCceeEecCCCCccccchhhcC--------------------CCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccc
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQR--------------------LVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTS 74 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~--------------------l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 74 (295)
+++|+.|++++|.+.++|..+.. +++|+.|++.+|.+.+..+. ..+++|++|++++|..
T Consensus 281 l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l 359 (570)
T 2z63_A 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGL 359 (570)
T ss_dssp GTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCC
T ss_pred cCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCcc
Confidence 45555555555555555544444 44455555555443332222 6678888888888653
Q ss_pred cccc--ccchhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccC----cCCCCCceEEccCccccc-cc
Q 039126 75 LLET--HSSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFP----ELFYNIKELSLDGTAINE-LP 146 (295)
Q Consensus 75 ~~~~--~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~i~~-~~ 146 (295)
.... +..+..+++|++|++++|. +..++..+ .+++|+.|++++|...+..+ ..+.+|++|++++|.+.. .+
T Consensus 360 ~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 438 (570)
T 2z63_A 360 SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438 (570)
T ss_dssp BEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred CccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence 3322 5667889999999999864 44444434 48999999999987554433 234588999999999884 56
Q ss_pred hhhhCCCCCcEEecCCCcCC-cCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchh
Q 039126 147 SSIEYLSKLVILNLGNSSRL-EGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSII 225 (295)
Q Consensus 147 ~~~~~~~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 225 (295)
..+..+++|+.|++++|... ..+|..+..+++|++|++++|.+.+..|..+..+ ++|++|++++| .++.++...
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n-~l~~~~~~~-- 513 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL--SSLQVLNMASN-QLKSVPDGI-- 513 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECCSS-CCSCCCTTT--
T ss_pred hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc--cCCCEEeCCCC-cCCCCCHHH--
Confidence 67889999999999999654 4688889999999999999999888778888887 99999999997 466665432
Q ss_pred hhccCCcccEEeecCCCCChhh
Q 039126 226 FTKISRNTQSFDFINCFKLHQN 247 (295)
Q Consensus 226 ~~~~~~~L~~L~l~~c~~l~~~ 247 (295)
...+++|++|++++++--...
T Consensus 514 -~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 514 -FDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp -TTTCTTCCEEECCSSCBCCCT
T ss_pred -hhcccCCcEEEecCCcccCCC
Confidence 157899999999998654443
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=5.6e-20 Score=178.56 Aligned_cols=169 Identities=15% Similarity=0.141 Sum_probs=124.3
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcC-C-CCCCCCCCcEeeccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEI-P-SLSLATNLESLNFQRYTSLLETH 79 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~-~-~~~~l~~L~~L~l~~~~~~~~~~ 79 (295)
+..++.+|. .++++++|+|++|.++.+ +..++++++|++|++++|...+.+ | .+..+++|++|++++|......|
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 456788887 678999999999999876 577899999999999999777776 4 58999999999999976666667
Q ss_pred cchhcccCCcEEccccCcCCceeCCc--c-cCccccEEeccCCCCCcccC-c---CCCCCceEEccCccccc-cchhhhC
Q 039126 80 SSIRHLNKFVARNLKHCRSLTNLSTS--I-HLESLKKLILSGCSNLMSFP-E---LFYNIKELSLDGTAINE-LPSSIEY 151 (295)
Q Consensus 80 ~~~~~l~~L~~L~l~~~~~l~~l~~~--~-~~~~L~~L~l~~~~~~~~~~-~---~~~~L~~L~l~~~~i~~-~~~~~~~ 151 (295)
..+..+++|++|++++|......+.. + .+++|++|++++|.+.+..+ . .+.+|++|++++|.++. .+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 78999999999999997555444443 2 48899999999987655433 2 34577889999888763 3444444
Q ss_pred C--CCCcEEecCCCcCCcCccccc
Q 039126 152 L--SKLVILNLGNSSRLEGLPSKI 173 (295)
Q Consensus 152 ~--~~L~~L~l~~~~~~~~~p~~l 173 (295)
+ ++|+.|++++|......|..+
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCC
T ss_pred ccCCccceEECCCCccccccccch
Confidence 3 455555555554333333333
No 48
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=1.7e-19 Score=164.01 Aligned_cols=222 Identities=22% Similarity=0.310 Sum_probs=130.2
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccc---
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETH--- 79 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--- 79 (295)
++.+..+|.+..+++|++|++++|.+..++. ++.+++|++|++++|.+. .++.+..+++|++|++++|.. ..++
T Consensus 77 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~ 153 (466)
T 1o6v_A 77 NNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT-DIDPLKNLTNLNRLELSSNTI-SDISALS 153 (466)
T ss_dssp SSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEEEEEEEE-CCCGGGT
T ss_pred CCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCC-CChHHcCCCCCCEEECCCCcc-CCChhhc
Confidence 4566667765568888888888888887766 888888888888888754 344477788888888877532 2221
Q ss_pred -----------------cchhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccC-cCCCCCceEEccCc-
Q 039126 80 -----------------SSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFP-ELFYNIKELSLDGT- 140 (295)
Q Consensus 80 -----------------~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~- 140 (295)
..+..+++|+.|++++|. ++.++....+++|++|++++|...+..+ ..+.+|++|++++|
T Consensus 154 ~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 232 (466)
T 1o6v_A 154 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 232 (466)
T ss_dssp TCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCC
Confidence 124556677777777643 4444433346666666666665433222 12234444555444
Q ss_pred ---------------------cccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhc
Q 039126 141 ---------------------AINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRN 199 (295)
Q Consensus 141 ---------------------~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 199 (295)
.++.++. +..+++|+.|++++|. +..++. +..+++|++|++++|.+.+..+ +..
T Consensus 233 l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~ 307 (466)
T 1o6v_A 233 LKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISP--ISN 307 (466)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred cccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchh--hcC
Confidence 4443333 4445555555555552 333333 5556666666666655443222 444
Q ss_pred cCCCCcceeecccccccccccccchhhhccCCcccEEeecCC
Q 039126 200 LFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINC 241 (295)
Q Consensus 200 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 241 (295)
+ ++|++|++++|. ++.++. ...+++|++|++++|
T Consensus 308 l--~~L~~L~L~~n~-l~~~~~-----~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 308 L--KNLTYLTLYFNN-ISDISP-----VSSLTKLQRLFFYNN 341 (466)
T ss_dssp C--TTCSEEECCSSC-CSCCGG-----GGGCTTCCEEECCSS
T ss_pred C--CCCCEEECcCCc-CCCchh-----hccCccCCEeECCCC
Confidence 4 666777776653 343332 146677777777776
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=7.5e-20 Score=173.62 Aligned_cols=159 Identities=18% Similarity=0.198 Sum_probs=103.7
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeecccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
+..++.+|..+ .+++++|++++|.++.++. .++++++|++|++++|.+.+..|. +..+++|++|++++| .+..+|.
T Consensus 13 ~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~ 90 (680)
T 1ziw_A 13 HLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSD 90 (680)
T ss_dssp SSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCT
T ss_pred CCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccCh
Confidence 34566677543 3678888888888877664 467788888888888876665553 677788888888775 4445554
Q ss_pred -chhcccCCcEEccccCcCCceeCC-cc-cCccccEEeccCCCCCcccCcC---CCCCceEEccCccccccchh-h--hC
Q 039126 81 -SIRHLNKFVARNLKHCRSLTNLST-SI-HLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINELPSS-I--EY 151 (295)
Q Consensus 81 -~~~~l~~L~~L~l~~~~~l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~~~-~--~~ 151 (295)
.+..+++|++|++++|. ++.++. .+ .+++|++|++++|...+..|.. +.+|++|++++|.++.++.. + ..
T Consensus 91 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 47777888888887753 344443 23 3777777777777655544443 33566777777777655432 2 23
Q ss_pred CCCCcEEecCCCc
Q 039126 152 LSKLVILNLGNSS 164 (295)
Q Consensus 152 ~~~L~~L~l~~~~ 164 (295)
+++|+.|++++|.
T Consensus 170 ~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 170 NSSLKKLELSSNQ 182 (680)
T ss_dssp TCEESEEECTTCC
T ss_pred cccccEEECCCCc
Confidence 4566666666663
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=1.1e-20 Score=162.88 Aligned_cols=212 Identities=17% Similarity=0.181 Sum_probs=166.6
Q ss_pred ceeEecCCCCccc--cchhhc-------CCCCCcEEecCCCCCCCcCCC-C--CCCCCCcEeeccccccccccccchhcc
Q 039126 18 LVSPEIPRNSIKQ--LWKVVQ-------RLVNLKSINLNHSEHLTEIPS-L--SLATNLESLNFQRYTSLLETHSSIRHL 85 (295)
Q Consensus 18 L~~L~l~~~~~~~--l~~~~~-------~l~~L~~L~L~~~~~~~~~~~-~--~~l~~L~~L~l~~~~~~~~~~~~~~~l 85 (295)
++.|++++|.+.. ++..+. .+++|++|++++|.+.+..|. + ..+++|++|++++|. +...|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH
Confidence 7788888888753 555554 799999999999999888884 4 899999999999965 44447777777
Q ss_pred -----cCCcEEccccCcCCceeC-Ccc-cCccccEEeccCCCCCcc--cC-----cCCCCCceEEccCccccccc---hh
Q 039126 86 -----NKFVARNLKHCRSLTNLS-TSI-HLESLKKLILSGCSNLMS--FP-----ELFYNIKELSLDGTAINELP---SS 148 (295)
Q Consensus 86 -----~~L~~L~l~~~~~l~~l~-~~~-~~~~L~~L~l~~~~~~~~--~~-----~~~~~L~~L~l~~~~i~~~~---~~ 148 (295)
++|++|++++|. ++.++ ..+ .+++|+.|++++|+..+. ++ ..+.+|++|++++|.++.++ ..
T Consensus 144 ~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 999999999965 45554 444 489999999999986654 22 45678999999999998443 33
Q ss_pred -hhCCCCCcEEecCCCcCCcCcc-cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhh
Q 039126 149 -IEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIF 226 (295)
Q Consensus 149 -~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 226 (295)
+..+++|+.|++++|......| ..+..+++|++|++++|.+. .+|..+. ++|++|+++++ .++.++. .
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~----~~L~~L~Ls~N-~l~~~p~-~--- 292 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP----AKLSVLDLSYN-RLDRNPS-P--- 292 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC----SEEEEEECCSS-CCCSCCC-T---
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc----CCceEEECCCC-CCCCChh-H---
Confidence 3577999999999996555454 45667899999999998875 6777532 79999999986 5777754 2
Q ss_pred hccCCcccEEeecCCC
Q 039126 227 TKISRNTQSFDFINCF 242 (295)
Q Consensus 227 ~~~~~~L~~L~l~~c~ 242 (295)
..+++|++|++++++
T Consensus 293 -~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 293 -DELPQVGNLSLKGNP 307 (312)
T ss_dssp -TTSCEEEEEECTTCT
T ss_pred -hhCCCCCEEeccCCC
Confidence 688999999999874
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=6.7e-20 Score=158.40 Aligned_cols=213 Identities=15% Similarity=0.109 Sum_probs=169.0
Q ss_pred CCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126 14 RPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN 92 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 92 (295)
.+++|++|++++|.++.++ ..++.+++|++|++++|.+.+..+ +..+++|++|++++|. ++.++ ..++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEEE
Confidence 3678999999999999875 678999999999999998765444 8999999999999964 44444 348999999
Q ss_pred cccCcCCceeCCcccCccccEEeccCCCCCcccCcC---CCCCceEEccCcccccc-chhh-hCCCCCcEEecCCCcCCc
Q 039126 93 LKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINEL-PSSI-EYLSKLVILNLGNSSRLE 167 (295)
Q Consensus 93 l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~-~~~~-~~~~~L~~L~l~~~~~~~ 167 (295)
+++|. ++.++.. .+++|+.|++++|.+.+..+.. +.+|++|++++|.++.+ +..+ ..+++|++|++++|. +.
T Consensus 106 l~~n~-l~~~~~~-~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~ 182 (317)
T 3o53_A 106 AANNN-ISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IY 182 (317)
T ss_dssp CCSSC-CSEEEEC-CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CC
T ss_pred CCCCc-cCCcCcc-ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cc
Confidence 99964 4554433 3688999999999765544433 45788999999999865 3444 478999999999984 55
Q ss_pred CcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126 168 GLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL 244 (295)
Q Consensus 168 ~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 244 (295)
.++. ...+++|++|++++|.+. .+|..+..+ ++|++|+++++ .++.++... ..+++|++|++++++--
T Consensus 183 ~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l--~~L~~L~L~~N-~l~~l~~~~----~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 183 DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSA--AGVTWISLRNN-KLVLIEKAL----RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EEEC-CCCCTTCCEEECCSSCCC-EECGGGGGG--TTCSEEECTTS-CCCEECTTC----CCCTTCCEEECTTCCCB
T ss_pred cccc-ccccccCCEEECCCCcCC-cchhhhccc--CcccEEECcCC-cccchhhHh----hcCCCCCEEEccCCCcc
Confidence 5654 446999999999998765 456668877 99999999997 577777643 67899999999998765
No 52
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.6e-19 Score=152.52 Aligned_cols=191 Identities=18% Similarity=0.189 Sum_probs=115.0
Q ss_pred CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-hhcccCCcEEcc
Q 039126 16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS-IRHLNKFVARNL 93 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l 93 (295)
.+.+.++++++.++.+|..+. ..|+.|++++|.+....+ .+..+++|++|++++| .+..++.. +..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEEC
Confidence 457889999999888886554 678999999998765444 5888999999999885 44555544 577888888888
Q ss_pred ccCcCCceeCCcc--cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccchh-hhCCCCCcEEecCCCcCCc
Q 039126 94 KHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSSRLE 167 (295)
Q Consensus 94 ~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~ 167 (295)
++| .++.++... .+++|++|++++|.+....+. .+.+|++|++++|.++.++.. +..+++|+.|++++|. +.
T Consensus 93 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~ 170 (270)
T 2o6q_A 93 TDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LK 170 (270)
T ss_dssp CSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CS
T ss_pred CCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-Cc
Confidence 874 345555432 366777777777654332222 223455555555555544433 4455555555555553 22
Q ss_pred Ccc-cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccc
Q 039126 168 GLP-SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWC 213 (295)
Q Consensus 168 ~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~ 213 (295)
.++ ..+.++++|++|++++|.+.+..+..+..+ ++|+.|+++++
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~l~~N 215 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL--EKLKMLQLQEN 215 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--TTCCEEECCSS
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccc--cCCCEEEecCC
Confidence 222 234555555555555554433222233333 45555555543
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=9e-20 Score=173.11 Aligned_cols=238 Identities=18% Similarity=0.192 Sum_probs=133.6
Q ss_pred CCCCCcCCC--CCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccc
Q 039126 3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLET 78 (295)
Q Consensus 3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~ 78 (295)
+..+..+|. +..+++|++|++++|.+..+ |..++++++|++|++++|.+....+ .+..+++|++|++++|...+..
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence 344555554 23577788888888777765 4556777888888888777553333 3777777888887775443333
Q ss_pred ccchhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCc-----CCCCCceEEccCcccccc-------
Q 039126 79 HSSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPE-----LFYNIKELSLDGTAINEL------- 145 (295)
Q Consensus 79 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~-----~~~~L~~L~l~~~~i~~~------- 145 (295)
+..+..+++|++|++++|......+..+ .+++|++|++++|.+.+..+. ...+|++|++++|.++.+
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 3457777777777777754333333222 356666666666543332221 113445555555544422
Q ss_pred ---------------------------------------------chhhhCCC--CCcEEecCCCcCCcCcccccCCCCC
Q 039126 146 ---------------------------------------------PSSIEYLS--KLVILNLGNSSRLEGLPSKICKLKS 178 (295)
Q Consensus 146 ---------------------------------------------~~~~~~~~--~L~~L~l~~~~~~~~~p~~l~~l~~ 178 (295)
+..+..++ +|+.|++++|......|..++.+++
T Consensus 194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273 (680)
T ss_dssp SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc
Confidence 22333332 3666666666433334455666666
Q ss_pred CCeeeccCCCCCCCchhhhhccCCCCcceeecccccccc-----cccccchhhhccCCcccEEeecCCC
Q 039126 179 LQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLE-----TLSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 179 L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
|++|++++|.+.+..|..+..+ ++|++|+++++..-. .++.-.......+++|++|+++++.
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 274 LEYFFLEYNNIQHLFSHSLHGL--FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CCEEECCSCCBSEECTTTTTTC--TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccEeeCCCCccCccChhhhcCC--CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 6666666666665556666665 666666666532111 1111000011467777788777763
No 54
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=1.2e-19 Score=168.69 Aligned_cols=134 Identities=15% Similarity=0.019 Sum_probs=76.6
Q ss_pred CccccEEeccCCCCCcccCcCC---CCCceEEccCccccccc---hhhhCCCCCcEEecCCCcCCcCcccc-cCCCCCCC
Q 039126 108 LESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINELP---SSIEYLSKLVILNLGNSSRLEGLPSK-ICKLKSLQ 180 (295)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~~---~~~~~~~~L~~L~l~~~~~~~~~p~~-l~~l~~L~ 180 (295)
+++|++|++++|.+.+.+|..+ .+|++|++++|.++.++ ..++.+++|+.|++++|.....+|.. +..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 4567777777776655555443 35667777777777543 45667777888888777544435532 44555555
Q ss_pred eeeccCCCCCC---------------------CchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeec
Q 039126 181 HLNLSCCSNLE---------------------SFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFI 239 (295)
Q Consensus 181 ~L~l~~~~~~~---------------------~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 239 (295)
+|++++|.+.+ .+|..+..+ ++|++|+++++ .++.++... ...+++|+.|+++
T Consensus 432 ~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l--~~L~~L~L~~N-~l~~l~~~~---~~~l~~L~~L~l~ 505 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHL--QALQELNVASN-QLKSVPDGV---FDRLTSLQYIWLH 505 (562)
T ss_dssp EEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSS--CCCSEEECCSS-CCCCCCTTS---TTTCTTCCCEECC
T ss_pred EEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCC--CCCCEEECCCC-CCCCCCHHH---HhcCCCCCEEEec
Confidence 55555544433 344444444 56666666654 345555431 1456667777776
Q ss_pred CCCCChhh
Q 039126 240 NCFKLHQN 247 (295)
Q Consensus 240 ~c~~l~~~ 247 (295)
+++--.+.
T Consensus 506 ~N~~~c~c 513 (562)
T 3a79_B 506 DNPWDCTC 513 (562)
T ss_dssp SCCBCCCH
T ss_pred CCCcCCCc
Confidence 66544333
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=8.3e-20 Score=166.82 Aligned_cols=212 Identities=16% Similarity=0.101 Sum_probs=170.7
Q ss_pred CCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126 15 PKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL 93 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 93 (295)
+++|+.|+|++|.+..++ ..++.+++|++|++++|.+.+..| +..+++|++|++++| .+..++. .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEEC
Confidence 558999999999999875 678999999999999999765555 899999999999996 4555542 389999999
Q ss_pred ccCcCCceeCCcccCccccEEeccCCCCCcccCcCC---CCCceEEccCccccc-cchhhh-CCCCCcEEecCCCcCCcC
Q 039126 94 KHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINE-LPSSIE-YLSKLVILNLGNSSRLEG 168 (295)
Q Consensus 94 ~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~-~~~~~~-~~~~L~~L~l~~~~~~~~ 168 (295)
++|. ++.++.. .+++|+.|++++|.+.+..|..+ .+|++|++++|.++. .|..+. .+++|+.|++++|. +..
T Consensus 107 ~~N~-l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~ 183 (487)
T 3oja_A 107 ANNN-ISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (487)
T ss_dssp CSSC-CCCEEEC-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred cCCc-CCCCCcc-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccc
Confidence 9964 4444432 36899999999998766656544 578899999999985 455664 78999999999995 555
Q ss_pred cccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126 169 LPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL 244 (295)
Q Consensus 169 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 244 (295)
+|. ...+++|++|++++|.+.+ +|..+..+ ++|+.|+++++ .++.++... ..+++|+.|++++++-.
T Consensus 184 ~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l--~~L~~L~Ls~N-~l~~lp~~l----~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 VKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSA--AGVTWISLRNN-KLVLIEKAL----RFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEC-CCCCTTCCEEECCSSCCCE-ECGGGGGG--TTCSEEECTTS-CCCEECTTC----CCCTTCCEEECTTCCBC
T ss_pred ccc-cccCCCCCEEECCCCCCCC-CCHhHcCC--CCccEEEecCC-cCcccchhh----ccCCCCCEEEcCCCCCc
Confidence 554 4569999999999988765 55568777 99999999996 467777643 57899999999998765
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=162.34 Aligned_cols=209 Identities=18% Similarity=0.137 Sum_probs=166.4
Q ss_pred CCCCCcCCC--CCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeecccccccccc
Q 039126 3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLET 78 (295)
Q Consensus 3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~ 78 (295)
+..++.+|. +..+++|++|++++|.+++++ ..++++++|++|++++|.+.+..+. +..+++|++|++++| .+..+
T Consensus 61 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l 139 (353)
T 2z80_A 61 NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTL 139 (353)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSS
T ss_pred CCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCccc
Confidence 445667776 346999999999999999875 5689999999999999987643334 899999999999996 55567
Q ss_pred cc--chhcccCCcEEccccCcCCceeCCc-c-cCccccEEeccCCCCCcccCcCCC---CCceEEccCccccccchhh-h
Q 039126 79 HS--SIRHLNKFVARNLKHCRSLTNLSTS-I-HLESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAINELPSSI-E 150 (295)
Q Consensus 79 ~~--~~~~l~~L~~L~l~~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~~~~~~~-~ 150 (295)
|. .+..+++|++|++++|..++.++.. + .+++|+.|++++|.+.+..|..+. +|++|++++|.+..++..+ .
T Consensus 140 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 219 (353)
T 2z80_A 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219 (353)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH
T ss_pred CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh
Confidence 65 5889999999999998777777543 3 489999999999987766676655 5668899999998877654 4
Q ss_pred CCCCCcEEecCCCcCCcC-------------------------------cccccCCCCCCCeeeccCCCCCCCchhhh-h
Q 039126 151 YLSKLVILNLGNSSRLEG-------------------------------LPSKICKLKSLQHLNLSCCSNLESFPNEL-R 198 (295)
Q Consensus 151 ~~~~L~~L~l~~~~~~~~-------------------------------~p~~l~~l~~L~~L~l~~~~~~~~~~~~l-~ 198 (295)
.+++|+.|++++|..... +|..+.++++|++|++++|.+. .+|..+ .
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~ 298 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFD 298 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHh
Confidence 578999999998854331 3445678899999999998765 677764 6
Q ss_pred ccCCCCcceeecccccc
Q 039126 199 NLFPCDLYDIEAHWCSS 215 (295)
Q Consensus 199 ~~~~~~L~~L~l~~~~~ 215 (295)
.+ ++|++|++++++-
T Consensus 299 ~l--~~L~~L~L~~N~~ 313 (353)
T 2z80_A 299 RL--TSLQKIWLHTNPW 313 (353)
T ss_dssp TC--TTCCEEECCSSCB
T ss_pred cC--CCCCEEEeeCCCc
Confidence 66 9999999998754
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=1.7e-19 Score=175.27 Aligned_cols=223 Identities=17% Similarity=0.132 Sum_probs=141.2
Q ss_pred CCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-C--CCCCCCCcEeeccccccccccc-cchhcccCC
Q 039126 14 RPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-S--LSLATNLESLNFQRYTSLLETH-SSIRHLNKF 88 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L 88 (295)
.+++|++|+|++|.+..+ |..++++++|++|++++|.+.+..| . +..+++|++|++++|......+ ..+..+++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 467777777777776655 5566777777777777776665444 2 6677777777777754433333 356777777
Q ss_pred cEEccccCcCCceeCCccc---------------------------Cc------cccEEeccCCCCCcccCcC-------
Q 039126 89 VARNLKHCRSLTNLSTSIH---------------------------LE------SLKKLILSGCSNLMSFPEL------- 128 (295)
Q Consensus 89 ~~L~l~~~~~l~~l~~~~~---------------------------~~------~L~~L~l~~~~~~~~~~~~------- 128 (295)
++|++++|..-...+..+. +. +|+.|++++|...+..+..
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 7777776532221111110 11 2566666655432222110
Q ss_pred ----------------------------------CCCCceEEccCcccccc-chhhhCCCCCcEEecCCCcCCcCccccc
Q 039126 129 ----------------------------------FYNIKELSLDGTAINEL-PSSIEYLSKLVILNLGNSSRLEGLPSKI 173 (295)
Q Consensus 129 ----------------------------------~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~l 173 (295)
..+++.|++++|.+..+ +..+..+++|+.|++++|......|..+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 13466677777766644 4456677888888888875545556677
Q ss_pred CCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126 174 CKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 174 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
.++++|++|++++|.+.+..+..+..+ ++|++|+++++ .++.++.... ..+++|++|+++++.
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGL--PKVAYIDLQKN-HIAIIQDQTF---KFLEKLQTLDLRDNA 373 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSC--TTCCEEECCSC-CCCCCCSSCS---CSCCCCCEEEEETCC
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCC--CCCCEEECCCC-CCCccChhhh---cCCCCCCEEECCCCC
Confidence 888888888888887766667777777 88888888876 4566554221 568889999998874
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=1.8e-20 Score=162.04 Aligned_cols=213 Identities=13% Similarity=0.125 Sum_probs=136.8
Q ss_pred CCCCCcCCC--CCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC-----------------CCCCCC
Q 039126 3 GCPFKSLSS--IIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS-----------------LSLATN 63 (295)
Q Consensus 3 ~~~~~~~p~--~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-----------------~~~l~~ 63 (295)
+..+..++. +..+++|++|++++|.+..++. ++.+++|++|++++|.+.+..+. ...+++
T Consensus 43 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 121 (317)
T 3o53_A 43 GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG 121 (317)
T ss_dssp TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSS
T ss_pred CCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCC
Confidence 345555552 3368899999999998887665 88889999999998875331110 123455
Q ss_pred CcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc--CCCCCceEEccC
Q 039126 64 LESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE--LFYNIKELSLDG 139 (295)
Q Consensus 64 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~ 139 (295)
|++|++++|......+..+..+++|++|++++|......+..+ .+++|+.|++++|.+. .++. .+.+|++|++++
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSS 200 (317)
T ss_dssp CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCS
T ss_pred CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-ccccccccccCCEEECCC
Confidence 6666666654333334456667777777777754333333332 2567777777776543 2232 245677777777
Q ss_pred ccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCC-CCchhhhhccCCCCcceeeccccccccc
Q 039126 140 TAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL-ESFPNELRNLFPCDLYDIEAHWCSSLET 218 (295)
Q Consensus 140 ~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~~~L~~L~l~~~~~l~~ 218 (295)
|.++.+|..+..+++|+.|++++| .+..+|..+..+++|+.|++++|.+. +..+..+..+ +.|+.++++++..++.
T Consensus 201 N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~--~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 201 NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN--QRVQTVAKQTVKKLTG 277 (317)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC--HHHHHHHHHHHHHHHS
T ss_pred CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc--ccceEEECCCchhccC
Confidence 777777666777777777777776 45566666777777777777777766 4566666666 7777777776665554
Q ss_pred cc
Q 039126 219 LS 220 (295)
Q Consensus 219 ~~ 220 (295)
..
T Consensus 278 ~~ 279 (317)
T 3o53_A 278 QN 279 (317)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 59
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1e-19 Score=159.33 Aligned_cols=226 Identities=17% Similarity=0.198 Sum_probs=180.2
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETH 79 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~ 79 (295)
+..++++|..+ .+++++|+|++|+|+.+|. .++++++|++|+|++|.+.+.+| .|..+++++++...+++.+..++
T Consensus 18 ~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 18 ESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp STTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 34577788644 5789999999999999986 57999999999999999877777 48899998887666667777775
Q ss_pred -cchhcccCCcEEccccCcCCceeCCccc--CccccEEeccCCCCCcccCcC-C----CCCceEEccCccccccchhhhC
Q 039126 80 -SSIRHLNKFVARNLKHCRSLTNLSTSIH--LESLKKLILSGCSNLMSFPEL-F----YNIKELSLDGTAINELPSSIEY 151 (295)
Q Consensus 80 -~~~~~l~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~~~~~~~~-~----~~L~~L~l~~~~i~~~~~~~~~ 151 (295)
..+..+++|++|++++| .++.++.... ...+..+++.++..+..++.. + ..++.|++++|.++.++..+..
T Consensus 97 ~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~ 175 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175 (350)
T ss_dssp TTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST
T ss_pred chhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc
Confidence 55899999999999985 5566665443 556778888776666666642 2 2567899999999999888777
Q ss_pred CCCCcEEecCCCcCCcCccc-ccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccC
Q 039126 152 LSKLVILNLGNSSRLEGLPS-KICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKIS 230 (295)
Q Consensus 152 ~~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 230 (295)
.++|+.+++.++..++.+|. .+.++++|++|++++|.+ ..+|.. .+ .+|++|.+.++.+++.+|. . ..+
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~~--~~--~~L~~L~~l~~~~l~~lP~-l----~~l 245 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSY--GL--ENLKKLRARSTYNLKKLPT-L----EKL 245 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CCCCSS--SC--TTCCEEECTTCTTCCCCCC-T----TTC
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc-CccChh--hh--ccchHhhhccCCCcCcCCC-c----hhC
Confidence 78999999988778888885 578999999999999865 456653 23 7889999888889999885 2 589
Q ss_pred CcccEEeecC
Q 039126 231 RNTQSFDFIN 240 (295)
Q Consensus 231 ~~L~~L~l~~ 240 (295)
++|+.+++.+
T Consensus 246 ~~L~~l~l~~ 255 (350)
T 4ay9_X 246 VALMEASLTY 255 (350)
T ss_dssp CSCCEEECSC
T ss_pred cChhhCcCCC
Confidence 9999999865
No 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1.2e-19 Score=150.34 Aligned_cols=200 Identities=14% Similarity=0.152 Sum_probs=123.0
Q ss_pred CCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccc-cc
Q 039126 6 FKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETH-SS 81 (295)
Q Consensus 6 ~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~ 81 (295)
++++|. ..++++.|++++|.++.++. .++++++|++|++++|.....++ .+..+++|++|++++|+.++.++ ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 556666 44578888888888887765 56778888888888886333443 47778888888888755566665 34
Q ss_pred hhcccCCcEEccccCcCCceeCCcccCcccc---EEeccCCCCCcccCc----CCCCCc-eEEccCccccccchhhhCCC
Q 039126 82 IRHLNKFVARNLKHCRSLTNLSTSIHLESLK---KLILSGCSNLMSFPE----LFYNIK-ELSLDGTAINELPSSIEYLS 153 (295)
Q Consensus 82 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~---~L~l~~~~~~~~~~~----~~~~L~-~L~l~~~~i~~~~~~~~~~~ 153 (295)
+..+++|++|++++| .++.+|....+++|+ .|++++|..+..++. .+.+|+ +|++++|.++.+|......+
T Consensus 101 f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 101 LKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT 179 (239)
T ss_dssp EECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTC
T ss_pred hCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCC
Confidence 677788888888774 344566533455665 777777622333333 123555 66666666666655443345
Q ss_pred CCcEEecCCCcCCcCcc-cccCCC-CCCCeeeccCCCCCCCchhhhhccCCCCcceeecccc
Q 039126 154 KLVILNLGNSSRLEGLP-SKICKL-KSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWC 213 (295)
Q Consensus 154 ~L~~L~l~~~~~~~~~p-~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~ 213 (295)
+|+.|++++|..+..+| ..+.++ ++|+.|++++|.+. .+|.. .+ ++|++|+++++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~--~~L~~L~l~~~ 236 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GL--EHLKELIARNT 236 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TC--TTCSEEECTTC
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--Hh--ccCceeeccCc
Confidence 66666666664344443 345566 66666666665543 33333 22 55666655554
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=6.2e-20 Score=169.92 Aligned_cols=207 Identities=17% Similarity=0.128 Sum_probs=149.4
Q ss_pred CCCCcCCCCCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc
Q 039126 4 CPFKSLSSIIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS 81 (295)
Q Consensus 4 ~~~~~~p~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (295)
..++++|... .++|++|++++|.++++ |..++++++|++|++++|.+.+..| .+..+++|++|++++|......+..
T Consensus 15 ~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 15 RSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp SCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred CccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence 3566777644 47899999999999887 4678999999999999999877666 5899999999999997554444455
Q ss_pred hhcccCCcEEccccCcCCc-eeCCcc-cCccccEEeccCCCCCcccCc-CC---CCCceEEccCcccc-ccchhhhCCCC
Q 039126 82 IRHLNKFVARNLKHCRSLT-NLSTSI-HLESLKKLILSGCSNLMSFPE-LF---YNIKELSLDGTAIN-ELPSSIEYLSK 154 (295)
Q Consensus 82 ~~~l~~L~~L~l~~~~~l~-~l~~~~-~~~~L~~L~l~~~~~~~~~~~-~~---~~L~~L~l~~~~i~-~~~~~~~~~~~ 154 (295)
+..+++|++|++++|.... ..+..+ .+++|+.|++++|...+.+|. .+ .+|++|++++|.++ ..|..++.+++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 8999999999999964332 233333 488999999999876666663 33 45678899999888 46777888888
Q ss_pred CcEEecCCCcCCcCccccc-CCCCCCCeeeccCCCCCCCc--hhhhhccCCCCcceeecccc
Q 039126 155 LVILNLGNSSRLEGLPSKI-CKLKSLQHLNLSCCSNLESF--PNELRNLFPCDLYDIEAHWC 213 (295)
Q Consensus 155 L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~~~~~~~~~--~~~l~~~~~~~L~~L~l~~~ 213 (295)
|++|+++.|. ...+|..+ ..+++|++|++++|.+.+.. +..+.. .+++|++|+++++
T Consensus 174 L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~L~~L~l~~n 233 (549)
T 2z81_A 174 IHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE-VSSPMKKLAFRGS 233 (549)
T ss_dssp EEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC-CCCCCCEEEEESC
T ss_pred CceEecccCc-ccccchhhHhhcccccEEEccCCccccccccccchhh-hhhcccceecccc
Confidence 8888888774 44455433 45778888888887665521 111111 1255666666554
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.8e-19 Score=155.12 Aligned_cols=196 Identities=17% Similarity=0.209 Sum_probs=152.4
Q ss_pred CCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126 12 IIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVAR 91 (295)
Q Consensus 12 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 91 (295)
...+++|+.|++++|.+..++ .+..+++|++|++++|.+.+ ++.+..+++|++|++++|. ++.++ .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD-LAPLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCC-ChhHccCCCCCEEEccCCc-CCCch-hhcCCCCCCEE
Confidence 335788999999999988886 68889999999999998654 4448899999999999965 55554 67889999999
Q ss_pred ccccCcCCceeCCcccCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCc
Q 039126 92 NLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGL 169 (295)
Q Consensus 92 ~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~ 169 (295)
++++| .++.++....+++|+.|++++|.+. .++. .+.+|++|++++|.++.++. +..+++|+.|++++|. +..+
T Consensus 113 ~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~ 188 (308)
T 1h6u_A 113 DLTST-QITDVTPLAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDI 188 (308)
T ss_dssp ECTTS-CCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCC
T ss_pred ECCCC-CCCCchhhcCCCCCCEEECCCCccC-cCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcC
Confidence 99985 4566665446889999999998644 3332 34578899999999888776 7888999999999884 5556
Q ss_pred ccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccc
Q 039126 170 PSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSG 221 (295)
Q Consensus 170 p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 221 (295)
+. +..+++|++|++++|.+.+.. .+..+ ++|++|++++++ ++..+.
T Consensus 189 ~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l--~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 189 SP-LASLPNLIEVHLKNNQISDVS--PLANT--SNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp GG-GGGCTTCCEEECTTSCCCBCG--GGTTC--TTCCEEEEEEEE-EECCCE
T ss_pred hh-hcCCCCCCEEEccCCccCccc--cccCC--CCCCEEEccCCe-eecCCe
Confidence 54 788999999999998766543 26666 899999999865 565554
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=4e-19 Score=165.07 Aligned_cols=183 Identities=18% Similarity=0.211 Sum_probs=131.2
Q ss_pred CCCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc
Q 039126 2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH 79 (295)
Q Consensus 2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 79 (295)
.+..+.++|..+ .++++.|++++|.++.++ ..+.++++|++|++++|.+.+..+ .+..+++|++|++++|......+
T Consensus 15 ~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 15 MELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp CSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence 345567777633 567999999999998875 468999999999999998766555 48999999999999965444444
Q ss_pred cchhcccCCcEEccccCcCCceeCCc-c-cCccccEEeccCCCCCc-ccCcCC---CCCceEEccCcccccc-chhhhCC
Q 039126 80 SSIRHLNKFVARNLKHCRSLTNLSTS-I-HLESLKKLILSGCSNLM-SFPELF---YNIKELSLDGTAINEL-PSSIEYL 152 (295)
Q Consensus 80 ~~~~~l~~L~~L~l~~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~-~~~~~~---~~L~~L~l~~~~i~~~-~~~~~~~ 152 (295)
..+..+++|++|++++| .++.++.. + .+++|++|++++|.+.+ .+|..+ .+|++|++++|.++.+ +..++.+
T Consensus 94 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 172 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred hhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence 67899999999999985 45655542 2 48899999999987654 456654 4788999999988865 3456666
Q ss_pred CCC----cEEecCCCcCCcCcccccCCCCCCCeeeccCC
Q 039126 153 SKL----VILNLGNSSRLEGLPSKICKLKSLQHLNLSCC 187 (295)
Q Consensus 153 ~~L----~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~ 187 (295)
++| ..+++++|......|..+..+ +|+.|++++|
T Consensus 173 ~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred hccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence 666 778887774333333333222 4555554443
No 64
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=4.2e-20 Score=160.63 Aligned_cols=225 Identities=15% Similarity=0.172 Sum_probs=174.5
Q ss_pred CCceeEecCCCCccccchhhcCC--CCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccc-cccchhcccCCcEEc
Q 039126 16 KNLVSPEIPRNSIKQLWKVVQRL--VNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLE-THSSIRHLNKFVARN 92 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ 92 (295)
..++.++++++.+. +..+..+ ..++.|++.+|.+.+..+.+..+++|++|++++|..... ++..+..+++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 44789999998776 4556666 899999999998877777788899999999999875444 777788999999999
Q ss_pred cccCcCCceeCCcc-cCccccEEeccCCCCCcc--cCc---CCCCCceEEccCc-cccc--cchhhhCCC-CCcEEecCC
Q 039126 93 LKHCRSLTNLSTSI-HLESLKKLILSGCSNLMS--FPE---LFYNIKELSLDGT-AINE--LPSSIEYLS-KLVILNLGN 162 (295)
Q Consensus 93 l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~--~~~---~~~~L~~L~l~~~-~i~~--~~~~~~~~~-~L~~L~l~~ 162 (295)
+++|..-...+..+ .+++|++|++++|...+. ++. .+++|++|++++| .++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 99975433344333 389999999999943332 333 4668999999999 8883 677788899 999999999
Q ss_pred Cc-CC--cCcccccCCCCCCCeeeccCCC-CCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEee
Q 039126 163 SS-RL--EGLPSKICKLKSLQHLNLSCCS-NLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDF 238 (295)
Q Consensus 163 ~~-~~--~~~p~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 238 (295)
|. .+ ..+|..+.++++|++|++++|. +.+..+..+..+ ++|++|++++|..+..... .....+++|++|++
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l 279 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL--NYLQHLSLSRCYDIIPETL---LELGEIPTLKTLQV 279 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC--TTCCEEECTTCTTCCGGGG---GGGGGCTTCCEEEC
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC--CCCCEeeCCCCCCCCHHHH---HHHhcCCCCCEEec
Confidence 84 23 4466677889999999999998 556778888887 9999999999874443322 11257999999999
Q ss_pred cCCCCChhhhH
Q 039126 239 INCFKLHQNVV 249 (295)
Q Consensus 239 ~~c~~l~~~~~ 249 (295)
++| +++...
T Consensus 280 ~~~--i~~~~~ 288 (336)
T 2ast_B 280 FGI--VPDGTL 288 (336)
T ss_dssp TTS--SCTTCH
T ss_pred cCc--cCHHHH
Confidence 999 555433
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=5e-19 Score=149.79 Aligned_cols=213 Identities=15% Similarity=0.072 Sum_probs=161.3
Q ss_pred eEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcC
Q 039126 20 SPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRS 98 (295)
Q Consensus 20 ~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 98 (295)
..+..+..+..+|..+. +.|++|++++|.+.+..+ .+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~- 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP- 87 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-
Confidence 45556667777887554 579999999999776666 68999999999999975443344568999999999999964
Q ss_pred CceeCC-cc-cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccc--cchhhhCCCCCcEEecCCCcCCcCccc
Q 039126 99 LTNLST-SI-HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINE--LPSSIEYLSKLVILNLGNSSRLEGLPS 171 (295)
Q Consensus 99 l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~--~~~~~~~~~~L~~L~l~~~~~~~~~p~ 171 (295)
++.++. .+ .+++|+.|++++|...+..+. .+.+|++|++++|.++. +|..++.+++|+.|++++|......+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 555553 33 489999999999875543332 34578899999999985 688999999999999999964444445
Q ss_pred ccCCCCCCC----eeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126 172 KICKLKSLQ----HLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 172 ~l~~l~~L~----~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
.+..+++|+ +|++++|.+.+ ++...... .+|++|+++++. ++.++... ...+++|++|++++++
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~--~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKE--IRLKELALDTNQ-LKSVPDGI---FDRLTSLQKIWLHTNP 235 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCE-ECTTSSCS--CCEEEEECCSSC-CSCCCTTT---TTTCCSCCEEECCSSC
T ss_pred HhhhhhhccccceeeecCCCcccc-cCccccCC--CcccEEECCCCc-eeecCHhH---hcccccccEEEccCCc
Confidence 666666666 89999987654 44444343 689999999875 77776532 2578999999999654
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=3.7e-19 Score=150.40 Aligned_cols=199 Identities=18% Similarity=0.093 Sum_probs=142.8
Q ss_pred CCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcE
Q 039126 11 SIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVA 90 (295)
Q Consensus 11 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 90 (295)
....+++|+.|++++|.+..++ .++.+++|++|++++|.+.+ ++.+..+++|++|++++|......+..+..+++|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3345788899999988887765 47788999999999988643 567888899999999886443333344788899999
Q ss_pred EccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccchh-hhCCCCCcEEecCCCc
Q 039126 91 RNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSS 164 (295)
Q Consensus 91 L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~ 164 (295)
|++++|. ++.++... .+++|+.|++++|.+.+..+. .+.+|++|++++|.++.++.. ++.+++|+.|++++|.
T Consensus 114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 9998854 45555432 478899999988865433332 245788888888888876654 5778889999998885
Q ss_pred CCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccc
Q 039126 165 RLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSG 221 (295)
Q Consensus 165 ~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 221 (295)
.....+..+..+++|+.|++++|.+.+. +++|+.+++..+.....+|.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~---------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT---------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC---------TTTTHHHHHHHHHTGGGBBC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc---------CcHHHHHHHHHHhCCCcccC
Confidence 4444445578888899999988876543 26677777776554444444
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.1e-18 Score=144.56 Aligned_cols=185 Identities=23% Similarity=0.285 Sum_probs=146.7
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeeccccccccccc-
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETH- 79 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~- 79 (295)
+..++.+|..+ .++++.|++++|.+..++. .++++++|++|++++|.+....+. +..+++|++|++++|. +..++
T Consensus 25 ~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~ 102 (270)
T 2o6q_A 25 SKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPI 102 (270)
T ss_dssp TSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCT
T ss_pred CCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCH
Confidence 34566677543 3789999999999998875 689999999999999987644343 6899999999999965 45555
Q ss_pred cchhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc----CCCCCceEEccCccccccchh-hhCC
Q 039126 80 SSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAINELPSS-IEYL 152 (295)
Q Consensus 80 ~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~~~-~~~~ 152 (295)
..+..+++|++|++++| .++.++... .+++|+.|++++|.+. .+|. .+.+|++|++++|.++.++.. +..+
T Consensus 103 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 180 (270)
T 2o6q_A 103 GVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180 (270)
T ss_dssp TTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence 45789999999999995 455555433 4899999999998754 4443 345889999999999988764 7889
Q ss_pred CCCcEEecCCCcCCcCcc-cccCCCCCCCeeeccCCCCCCC
Q 039126 153 SKLVILNLGNSSRLEGLP-SKICKLKSLQHLNLSCCSNLES 192 (295)
Q Consensus 153 ~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~ 192 (295)
++|++|++++|. +..+| ..+..+++|+.|++++|++...
T Consensus 181 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 181 TELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 999999999984 55555 4588899999999999986543
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=1.3e-18 Score=148.37 Aligned_cols=190 Identities=22% Similarity=0.158 Sum_probs=94.3
Q ss_pred CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126 14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN 92 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 92 (295)
.+++++.++++++.++.+|..+. +.++.|++++|.+.+..+ .+..+++|++|++++| .++.++.. ..+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEE
Confidence 45556666666666666655443 456666666666544433 3566666666666663 23333322 4555666666
Q ss_pred cccCcCCceeCCcc-cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccchh-hhCCCCCcEEecCCCcCCc
Q 039126 93 LKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSSRLE 167 (295)
Q Consensus 93 l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~ 167 (295)
+++| .++.+|..+ .+++|+.|++++|++.+-.+. .+.+|++|++++|.++.+|.. +..+++|+.|++++|. +.
T Consensus 84 Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~ 161 (290)
T 1p9a_G 84 LSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LT 161 (290)
T ss_dssp CCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CS
T ss_pred CCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CC
Confidence 6553 334444433 255555555555543322112 122444555555555544332 3445555555555542 33
Q ss_pred Cccc-ccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccc
Q 039126 168 GLPS-KICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHW 212 (295)
Q Consensus 168 ~~p~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~ 212 (295)
.+|. .+.++++|+.|++++|.+. .+|..+... .+|+++++++
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~--~~L~~l~L~~ 204 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS--HLLPFAFLHG 204 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT--CCCSEEECCS
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc--ccCCeEEeCC
Confidence 3332 2344555555555554432 444444443 4555555554
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=6.1e-19 Score=149.08 Aligned_cols=190 Identities=18% Similarity=0.179 Sum_probs=154.6
Q ss_pred CCCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeecccccccccccc
Q 039126 2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
.+..+..++.+..+++|++|++++|.+..++ .++.+++|++|++++|.+.+..+. +..+++|++|++++|......+.
T Consensus 49 ~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 127 (272)
T 3rfs_A 49 NNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG 127 (272)
T ss_dssp TTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHH
Confidence 3456777787778999999999999998875 789999999999999987755553 79999999999999754444444
Q ss_pred chhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccchh-hhCCCC
Q 039126 81 SIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPSS-IEYLSK 154 (295)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~-~~~~~~ 154 (295)
.+..+++|++|++++| .++.++... .+++|+.|++++|.+.+..+. .+.+|++|++++|.++.++.. ++.+++
T Consensus 128 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 5789999999999996 566666543 489999999999976544333 345789999999999977654 688999
Q ss_pred CcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhcc
Q 039126 155 LVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNL 200 (295)
Q Consensus 155 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 200 (295)
|+.|++++|.. .+.++.|+.++++.|.+.+.+|..++.+
T Consensus 207 L~~L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 207 LQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCEEECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCEEEccCCCc-------cccCcHHHHHHHHHHhCCCcccCccccc
Confidence 99999999853 3457789999999999999999887765
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=8.9e-19 Score=150.83 Aligned_cols=217 Identities=16% Similarity=0.142 Sum_probs=165.7
Q ss_pred CCCCceeEecCCCCccc--cch--hhcCCCCCcEEecCCCCCCCcCC-CC--CCCCCCcEeeccccccccccc----cch
Q 039126 14 RPKNLVSPEIPRNSIKQ--LWK--VVQRLVNLKSINLNHSEHLTEIP-SL--SLATNLESLNFQRYTSLLETH----SSI 82 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~--l~~--~~~~l~~L~~L~L~~~~~~~~~~-~~--~~l~~L~~L~l~~~~~~~~~~----~~~ 82 (295)
....++.+.+.++.+.. +.. ....+++|++|++++|.+.+..| .+ ..+++|++|++++|......+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34457788888877653 221 22345779999999999888887 45 899999999999976555433 234
Q ss_pred hcccCCcEEccccCcCCceeC-Ccc-cCccccEEeccCCCCCcc--c-----CcCCCCCceEEccCccccccchh----h
Q 039126 83 RHLNKFVARNLKHCRSLTNLS-TSI-HLESLKKLILSGCSNLMS--F-----PELFYNIKELSLDGTAINELPSS----I 149 (295)
Q Consensus 83 ~~l~~L~~L~l~~~~~l~~l~-~~~-~~~~L~~L~l~~~~~~~~--~-----~~~~~~L~~L~l~~~~i~~~~~~----~ 149 (295)
..+++|++|++++|.. ...+ ..+ .+++|++|++++|+..+. + ...+++|++|++++|.++.++.. +
T Consensus 142 ~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 5799999999999655 4444 333 489999999999986542 2 23566899999999999866553 4
Q ss_pred hCCCCCcEEecCCCcCCcCcccccCCC---CCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhh
Q 039126 150 EYLSKLVILNLGNSSRLEGLPSKICKL---KSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIF 226 (295)
Q Consensus 150 ~~~~~L~~L~l~~~~~~~~~p~~l~~l---~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 226 (295)
+.+++|++|++++|......|..+..+ ++|++|++++|.+. .+|..+ +++|++|+++++ .++.++. .
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~----~~~L~~L~Ls~N-~l~~~~~-~--- 290 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL----PAKLRVLDLSSN-RLNRAPQ-P--- 290 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC----CSCCSCEECCSC-CCCSCCC-T---
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh----cCCCCEEECCCC-cCCCCch-h---
Confidence 778999999999997555557777766 69999999998876 677653 389999999986 4676654 1
Q ss_pred hccCCcccEEeecCCC
Q 039126 227 TKISRNTQSFDFINCF 242 (295)
Q Consensus 227 ~~~~~~L~~L~l~~c~ 242 (295)
..+++|++|++++++
T Consensus 291 -~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 291 -DELPEVDNLTLDGNP 305 (310)
T ss_dssp -TSCCCCSCEECSSTT
T ss_pred -hhCCCccEEECcCCC
Confidence 578999999999875
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=2.7e-19 Score=148.28 Aligned_cols=205 Identities=17% Similarity=0.179 Sum_probs=159.0
Q ss_pred CccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc-chhcccCCcEEccccCcCCceeCC
Q 039126 27 SIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKHCRSLTNLST 104 (295)
Q Consensus 27 ~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~ 104 (295)
.++++|. +. ..|++|++++|.+.+..+ .+..+++|++|++++|..++.++. .+..+++|++|++++|..++.++.
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 4777776 43 489999999999765555 589999999999999765777775 588999999999998667778775
Q ss_pred cc--cCccccEEeccCCCCCcccCc--CCCCCc---eEEccCc-cccccchh-hhCCCCCc-EEecCCCcCCcCcccccC
Q 039126 105 SI--HLESLKKLILSGCSNLMSFPE--LFYNIK---ELSLDGT-AINELPSS-IEYLSKLV-ILNLGNSSRLEGLPSKIC 174 (295)
Q Consensus 105 ~~--~~~~L~~L~l~~~~~~~~~~~--~~~~L~---~L~l~~~-~i~~~~~~-~~~~~~L~-~L~l~~~~~~~~~p~~l~ 174 (295)
.. .+++|+.|++++|.+. .+|. .+.+|+ +|++++| .++.++.. +..+++|+ .|++++|. +..+|....
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~ 176 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF 176 (239)
T ss_dssp TSEECCTTCCEEEEEEECCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc
Confidence 44 4899999999998754 4675 334666 9999999 99988764 78899999 99999984 557776555
Q ss_pred CCCCCCeeeccCCCCCCCchh-hhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126 175 KLKSLQHLNLSCCSNLESFPN-ELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL 244 (295)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~~~~-~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 244 (295)
..++|+.|++++|.....++. .+..+ .++|+.|+++++ .++.++. ..+++|+.|++.++..|
T Consensus 177 ~~~~L~~L~L~~n~~l~~i~~~~~~~l-~~~L~~L~l~~N-~l~~l~~------~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTVIDKDAFGGV-YSGPSLLDVSQT-SVTALPS------KGLEHLKELIARNTWTL 239 (239)
T ss_dssp TTCEEEEEECTTCTTCCEECTTTTTTC-SBCCSEEECTTC-CCCCCCC------TTCTTCSEEECTTC---
T ss_pred CCCCCCEEEcCCCCCcccCCHHHhhcc-ccCCcEEECCCC-ccccCCh------hHhccCceeeccCccCC
Confidence 558999999999853344544 44432 268999999985 5788776 47899999999998653
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=4e-18 Score=154.33 Aligned_cols=131 Identities=16% Similarity=0.173 Sum_probs=55.2
Q ss_pred CCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcc
Q 039126 6 FKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHL 85 (295)
Q Consensus 6 ~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 85 (295)
+..+|.+..+++|++|++++|.++.+|..+ .+|++|++++|.+.+ +|++..+++|++|++++|. +..+|.. .
T Consensus 143 l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~-l~~l~~~---~ 214 (454)
T 1jl5_A 143 LEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNS-LKKLPDL---P 214 (454)
T ss_dssp CSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC-CSSCCCC---C
T ss_pred CCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCCCc-CCcCCCC---c
Confidence 333443333444444444444444433221 244444444444322 3444555555555555532 2222211 1
Q ss_pred cCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccc
Q 039126 86 NKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELP 146 (295)
Q Consensus 86 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 146 (295)
++|++|++++| .++.+|....+++|+.|++++|++. .+|....+|++|++++|.++.+|
T Consensus 215 ~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 215 LSLESIVAGNN-ILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSCCC
T ss_pred CcccEEECcCC-cCCcccccCCCCCCCEEECCCCcCC-cccccccccCEEECCCCcccccC
Confidence 23444444443 2223333223455555555555422 34444444555555554444443
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=5.6e-18 Score=158.44 Aligned_cols=219 Identities=20% Similarity=0.220 Sum_probs=126.9
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccch
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSI 82 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (295)
+..++.+|..+. ++|+.|++++|.++.+|. .+++|++|++++|.+. .+|. .+++|++|++++| .+..+|.
T Consensus 49 ~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N-~l~~l~~-- 118 (622)
T 3g06_A 49 ESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV--LPPGLLELSIFSN-PLTHLPA-- 118 (622)
T ss_dssp SSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEECSC-CCCCCCC--
T ss_pred CCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECcCC-cCCCCCC--
Confidence 455666776443 678888888887777765 5677888888887753 4554 5566777777664 3333433
Q ss_pred hcc--------------------cCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccc
Q 039126 83 RHL--------------------NKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAI 142 (295)
Q Consensus 83 ~~l--------------------~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i 142 (295)
.+ ++|++|++++| .++.+|.. +.+|+.|++++|. +..+|..+.+|+.|++++|.+
T Consensus 119 -~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N-~l~~l~~~--~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 119 -LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QLASLPAL--PSELCKLWAYNNQ-LTSLPMLPSGLQELSVSDNQL 193 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCC
T ss_pred -CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCC-cCCCcCCc--cCCCCEEECCCCC-CCCCcccCCCCcEEECCCCCC
Confidence 23 44555555553 22333221 2233333333332 112333333444444444444
Q ss_pred cccchhhh-----------------CCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCc
Q 039126 143 NELPSSIE-----------------YLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDL 205 (295)
Q Consensus 143 ~~~~~~~~-----------------~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L 205 (295)
+.+|..+. .+++|+.|++++| .+..+| ..+++|+.|++++|.+. .+|. . +++|
T Consensus 194 ~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~---~--~~~L 263 (622)
T 3g06_A 194 ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNRLT-SLPM---L--PSGL 263 (622)
T ss_dssp SCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCS-CCCC---C--CTTC
T ss_pred CCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCCCC-cCCc---c--cccC
Confidence 43332110 1256777777766 345555 34677888888887654 4555 2 3889
Q ss_pred ceeecccccccccccccchhhhccCCcccEEeecCCCCChhhhHhhH
Q 039126 206 YDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQNVVQGI 252 (295)
Q Consensus 206 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 252 (295)
++|++++| .++.+|..+ ..+++|+.|++++++ +.......+
T Consensus 264 ~~L~Ls~N-~L~~lp~~l----~~l~~L~~L~L~~N~-l~~~~~~~l 304 (622)
T 3g06_A 264 LSLSVYRN-QLTRLPESL----IHLSSETTVNLEGNP-LSERTLQAL 304 (622)
T ss_dssp CEEECCSS-CCCSCCGGG----GGSCTTCEEECCSCC-CCHHHHHHH
T ss_pred cEEeCCCC-CCCcCCHHH----hhccccCEEEecCCC-CCCcCHHHH
Confidence 99999986 567777543 688999999999986 444433333
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=4.2e-18 Score=159.28 Aligned_cols=193 Identities=22% Similarity=0.241 Sum_probs=134.8
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCC-------------------cCCCCCCCCC
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLT-------------------EIPSLSLATN 63 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~-------------------~~~~~~~l~~ 63 (295)
+..++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.+.+ .+|. .+++
T Consensus 70 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~--~l~~ 142 (622)
T 3g06_A 70 DNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV--LPPG 142 (622)
T ss_dssp SCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCC--CCTT
T ss_pred CCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCC--CCCC
Confidence 345555665 46677777777777766665 55666666666665432 1221 1367
Q ss_pred CcEeeccccccccccccc---hhcc--------------cCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccC
Q 039126 64 LESLNFQRYTSLLETHSS---IRHL--------------NKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFP 126 (295)
Q Consensus 64 L~~L~l~~~~~~~~~~~~---~~~l--------------~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~ 126 (295)
|++|++++| .+..+|.. +..+ ++|+.|++++| .++.+|.. +++|+.|++++|. +..+|
T Consensus 143 L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~l~~l~~~--~~~L~~L~L~~N~-l~~l~ 217 (622)
T 3g06_A 143 LQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN-QLASLPTL--PSELYKLWAYNNR-LTSLP 217 (622)
T ss_dssp CCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSSCC
T ss_pred CCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC-CCCCCCCc--cchhhEEECcCCc-ccccC
Confidence 888888875 33444432 2222 66677777664 34444432 4677888888775 44677
Q ss_pred cCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcc
Q 039126 127 ELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLY 206 (295)
Q Consensus 127 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~ 206 (295)
..+.+|+.|++++|.++.+| ..+++|+.|++++| .+..+|. .+++|+.|++++|.+. .+|..+..+ ++|+
T Consensus 218 ~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l--~~L~ 287 (622)
T 3g06_A 218 ALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHL--SSET 287 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGS--CTTC
T ss_pred CCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhc--cccC
Confidence 77788999999999999888 46689999999998 5677876 6889999999998766 789999988 9999
Q ss_pred eeecccccccc
Q 039126 207 DIEAHWCSSLE 217 (295)
Q Consensus 207 ~L~l~~~~~l~ 217 (295)
.|++++++.-.
T Consensus 288 ~L~L~~N~l~~ 298 (622)
T 3g06_A 288 TVNLEGNPLSE 298 (622)
T ss_dssp EEECCSCCCCH
T ss_pred EEEecCCCCCC
Confidence 99999976433
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=2.9e-20 Score=161.68 Aligned_cols=196 Identities=21% Similarity=0.272 Sum_probs=154.3
Q ss_pred CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCc-CC-CCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126 16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTE-IP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL 93 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 93 (295)
++++.|++++|.+...+..+..+++|++|++++|.+.+. ++ .+..+++|++|++++|......+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 789999999999887776677899999999999986554 55 4788999999999998655567777888999999999
Q ss_pred ccCcCCce--eCCcc-cCccccEEeccCC-CCCcc-cC---cCCC-CCceEEccCcc--cc--ccchhhhCCCCCcEEec
Q 039126 94 KHCRSLTN--LSTSI-HLESLKKLILSGC-SNLMS-FP---ELFY-NIKELSLDGTA--IN--ELPSSIEYLSKLVILNL 160 (295)
Q Consensus 94 ~~~~~l~~--l~~~~-~~~~L~~L~l~~~-~~~~~-~~---~~~~-~L~~L~l~~~~--i~--~~~~~~~~~~~L~~L~l 160 (295)
++|..++. ++... .+++|+.|++++| ..... ++ ..++ +|++|++++|. ++ .++..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 99866663 44433 4889999999998 55432 23 3456 89999999994 43 67777888999999999
Q ss_pred CCCcCC-cCcccccCCCCCCCeeeccCCC-CCCCchhhhhccCCCCcceeecccc
Q 039126 161 GNSSRL-EGLPSKICKLKSLQHLNLSCCS-NLESFPNELRNLFPCDLYDIEAHWC 213 (295)
Q Consensus 161 ~~~~~~-~~~p~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~~~L~~L~l~~~ 213 (295)
++|..+ ...+..+.++++|++|++++|. ........+..+ ++|++|++++|
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~ 282 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI--PTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC--TTCCEEECTTS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC--CCCCEEeccCc
Confidence 999744 4566778899999999999985 223333356666 99999999998
No 76
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=7.9e-18 Score=152.35 Aligned_cols=140 Identities=19% Similarity=0.207 Sum_probs=86.2
Q ss_pred CCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcccCccccEEeccC
Q 039126 39 VNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSG 118 (295)
Q Consensus 39 ~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~ 118 (295)
++|++|++++|.+.+ +|++..+++|++|++++| .++.+|.. ..+|++|++++| .++.+|....+++|+.|++++
T Consensus 131 ~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N-~l~~lp~~---~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNN-SLKKLPDL---PPSLEFIAAGNN-QLEELPELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCC-CcccCCCCCCCEEECCCC-cCcccCCC---cccccEEECcCC-cCCcCccccCCCCCCEEECCC
Confidence 456666666665543 556666677777777664 33445432 246667777664 344455433477777777777
Q ss_pred CCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCC
Q 039126 119 CSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL 190 (295)
Q Consensus 119 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 190 (295)
|.+. .+|....+|++|++++|.++.+|. ++.+++|+.|++++|. +..+|.. +++|++|++++|.+.
T Consensus 205 N~l~-~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 205 NSLK-KLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp SCCS-SCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCSSCCS
T ss_pred CcCC-cCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCc-CCccccc---ccccCEEECCCCccc
Confidence 7543 466666677777777777777763 6777777777777763 4445532 355666666665443
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=7.1e-20 Score=157.90 Aligned_cols=193 Identities=17% Similarity=0.170 Sum_probs=153.2
Q ss_pred CCCCceeEecCCCCcc-ccchhh--cCCCCCcEEecCCCCCCCcCC-CCCCC-----CCCcEeeccccccccccccchhc
Q 039126 14 RPKNLVSPEIPRNSIK-QLWKVV--QRLVNLKSINLNHSEHLTEIP-SLSLA-----TNLESLNFQRYTSLLETHSSIRH 84 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~L~~~~~~~~~~-~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~ 84 (295)
.+++|++|++++|.+. .+|..+ +.+++|++|++++|.+.+. | .+..+ ++|++|++++|......+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4889999999999998 567765 8999999999999998766 5 34444 89999999997655555577999
Q ss_pred ccCCcEEccccCcCCce--eCCc---ccCccccEEeccCCCCCc--ccCc----CCCCCceEEccCccccccc--hhhhC
Q 039126 85 LNKFVARNLKHCRSLTN--LSTS---IHLESLKKLILSGCSNLM--SFPE----LFYNIKELSLDGTAINELP--SSIEY 151 (295)
Q Consensus 85 l~~L~~L~l~~~~~l~~--l~~~---~~~~~L~~L~l~~~~~~~--~~~~----~~~~L~~L~l~~~~i~~~~--~~~~~ 151 (295)
+++|++|++++|...+. ++.. ..+++|++|++++|.+.+ .++. .+.+|++|++++|.++..+ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 99999999999875543 2222 248999999999997552 3332 3468999999999998654 34566
Q ss_pred CCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126 152 LSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS 214 (295)
Q Consensus 152 ~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 214 (295)
+++|+.|++++|. ++.+|..+. ++|++|++++|.+.+. |. +..+ ++|++|++++++
T Consensus 252 l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l--~~L~~L~L~~N~ 307 (312)
T 1wwl_A 252 PSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL--PQVGNLSLKGNP 307 (312)
T ss_dssp CTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS--CEEEEEECTTCT
T ss_pred cCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCCCC-hh-HhhC--CCCCEEeccCCC
Confidence 8999999999985 568888776 8999999999887654 65 7777 999999999864
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=8.7e-18 Score=143.31 Aligned_cols=200 Identities=20% Similarity=0.149 Sum_probs=159.0
Q ss_pred hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcccCcccc
Q 039126 34 VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIHLESLK 112 (295)
Q Consensus 34 ~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~ 112 (295)
.++.+++++.++++++.+. .+| .+. +++++|++++|......+..+..+++|++|++++| .++.++....+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCCCCCCcCC
Confidence 3578899999999999864 555 443 78999999997655555667999999999999995 567777666799999
Q ss_pred EEeccCCCCCcccCcC---CCCCceEEccCccccccc-hhhhCCCCCcEEecCCCcCCcCcc-cccCCCCCCCeeeccCC
Q 039126 113 KLILSGCSNLMSFPEL---FYNIKELSLDGTAINELP-SSIEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQHLNLSCC 187 (295)
Q Consensus 113 ~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~ 187 (295)
.|++++|.+ ..+|.. +.+|++|++++|.++.++ ..+..+++|+.|++++|. +..+| ..+..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC
Confidence 999999864 466664 457889999999999886 568899999999999995 44554 55789999999999998
Q ss_pred CCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCChh
Q 039126 188 SNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLHQ 246 (295)
Q Consensus 188 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 246 (295)
.+.+..+..+..+ ++|++|+++++ .++.++... ...++|+.+++.+++---+
T Consensus 159 ~l~~l~~~~~~~l--~~L~~L~L~~N-~l~~ip~~~----~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 159 NLTELPAGLLNGL--ENLDTLLLQEN-SLYTIPKGF----FGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCSCCCTTTTTTC--TTCCEEECCSS-CCCCCCTTT----TTTCCCSEEECCSCCBCCS
T ss_pred cCCccCHHHhcCc--CCCCEEECCCC-cCCccChhh----cccccCCeEEeCCCCccCc
Confidence 8765444445666 99999999986 578887754 4567899999998764433
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=3e-18 Score=147.42 Aligned_cols=181 Identities=15% Similarity=0.268 Sum_probs=151.1
Q ss_pred CCCCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccc
Q 039126 2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSS 81 (295)
Q Consensus 2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (295)
.++.+.++|.+..+++|++|++++|.+..++. +..+++|++|++++|.+. .++.+..+++|++|++++|. +..++.
T Consensus 49 ~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~~- 124 (308)
T 1h6u_A 49 FGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQ-ITDVTP- 124 (308)
T ss_dssp TTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEEECTTSC-CCCCGG-
T ss_pred eCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-CchhhcCCCCCCEEECCCCC-CCCchh-
Confidence 35677788877789999999999999999887 999999999999999854 56789999999999999964 555653
Q ss_pred hhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEe
Q 039126 82 IRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILN 159 (295)
Q Consensus 82 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~ 159 (295)
+..+++|++|++++| .++.++....+++|+.|++++|.+. .++. .+.+|++|++++|.++.++. +..+++|++|+
T Consensus 125 l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 201 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVH 201 (308)
T ss_dssp GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCC-CChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEE
Confidence 889999999999996 5566665446899999999998654 4443 45588999999999998876 78899999999
Q ss_pred cCCCcCCcCcccccCCCCCCCeeeccCCCCCC
Q 039126 160 LGNSSRLEGLPSKICKLKSLQHLNLSCCSNLE 191 (295)
Q Consensus 160 l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~ 191 (295)
+++|. +..++. +..+++|+.|++++|.+.+
T Consensus 202 L~~N~-l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 202 LKNNQ-ISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTSC-CCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred ccCCc-cCcccc-ccCCCCCCEEEccCCeeec
Confidence 99984 555653 8899999999999987644
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.3e-18 Score=158.82 Aligned_cols=198 Identities=16% Similarity=0.082 Sum_probs=159.3
Q ss_pred ccchhhcCCC----CCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCC
Q 039126 30 QLWKVVQRLV----NLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLST 104 (295)
Q Consensus 30 ~l~~~~~~l~----~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 104 (295)
.+|..+..+. +|++|++++|.+.+..| .+..+++|++|++++|......| +..+++|++|++++| .++.++.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~ 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC
Confidence 4555554444 89999999999877666 69999999999999976444443 889999999999996 5555553
Q ss_pred cccCccccEEeccCCCCCcccCcCCCCCceEEccCcccccc-chhhhCCCCCcEEecCCCcCCcCcccccC-CCCCCCee
Q 039126 105 SIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINEL-PSSIEYLSKLVILNLGNSSRLEGLPSKIC-KLKSLQHL 182 (295)
Q Consensus 105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L 182 (295)
.++|+.|++++|.+.+..+..+++|+.|++++|.++.+ |..++.+++|+.|++++|...+..|..+. .+++|++|
T Consensus 98 ---~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 98 ---GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp ---CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred ---CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 38999999999987776677788999999999999966 55788899999999999976666677775 79999999
Q ss_pred eccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126 183 NLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 183 ~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
++++|.+.+. +... .+ ++|++|+++++ .++.++..+ ..+++|+.|+++++.
T Consensus 175 ~Ls~N~l~~~-~~~~-~l--~~L~~L~Ls~N-~l~~~~~~~----~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 175 NLQYNFIYDV-KGQV-VF--AKLKTLDLSSN-KLAFMGPEF----QSAAGVTWISLRNNK 225 (487)
T ss_dssp ECTTSCCCEE-ECCC-CC--TTCCEEECCSS-CCCEECGGG----GGGTTCSEEECTTSC
T ss_pred ecCCCccccc-cccc-cC--CCCCEEECCCC-CCCCCCHhH----cCCCCccEEEecCCc
Confidence 9999987654 3322 34 99999999986 467776643 578999999999873
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=1.2e-19 Score=160.89 Aligned_cols=229 Identities=13% Similarity=0.115 Sum_probs=171.2
Q ss_pred CCCCceeEecCCCCccc-----cchhhcCCCCCcEEecCCCC---CCCcCC-C-------CCCCCCCcEeecccccccc-
Q 039126 14 RPKNLVSPEIPRNSIKQ-----LWKVVQRLVNLKSINLNHSE---HLTEIP-S-------LSLATNLESLNFQRYTSLL- 76 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~L~~~~---~~~~~~-~-------~~~l~~L~~L~l~~~~~~~- 76 (295)
.+++|++|++++|.+.. ++..+..+++|++|++++|. +.+.+| . +..+++|++|++++|....
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 47899999999998875 34557789999999999974 333444 2 3789999999999976554
Q ss_pred ---ccccchhcccCCcEEccccCcCCceeCCcc-----cC---------ccccEEeccCCCCC-cccC---c---CCCCC
Q 039126 77 ---ETHSSIRHLNKFVARNLKHCRSLTNLSTSI-----HL---------ESLKKLILSGCSNL-MSFP---E---LFYNI 132 (295)
Q Consensus 77 ---~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-----~~---------~~L~~L~l~~~~~~-~~~~---~---~~~~L 132 (295)
.++..+..+++|++|++++|..-...+..+ .+ ++|+.|++++|.+. ..++ . ...+|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 367778999999999999975422111111 13 89999999999865 3344 2 45589
Q ss_pred ceEEccCcccc--c---c-chhhhCCCCCcEEecCCCcCC----cCcccccCCCCCCCeeeccCCCCCCC----chhhhh
Q 039126 133 KELSLDGTAIN--E---L-PSSIEYLSKLVILNLGNSSRL----EGLPSKICKLKSLQHLNLSCCSNLES----FPNELR 198 (295)
Q Consensus 133 ~~L~l~~~~i~--~---~-~~~~~~~~~L~~L~l~~~~~~----~~~p~~l~~l~~L~~L~l~~~~~~~~----~~~~l~ 198 (295)
++|++++|.++ . + +..+..+++|+.|++++|... ..+|..+..+++|++|++++|.+.+. ++..+.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 99999999987 2 3 337788999999999999642 56777889999999999999987765 455554
Q ss_pred ccCCCCcceeeccccccccc-----ccccchhhhccCCcccEEeecCCCCChh
Q 039126 199 NLFPCDLYDIEAHWCSSLET-----LSGLSIIFTKISRNTQSFDFINCFKLHQ 246 (295)
Q Consensus 199 ~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 246 (295)
....++|++|++++|. ++. ++... ...+++|++|++++|+--..
T Consensus 270 ~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l---~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNE-IELDAVRTLKTVI---DEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp TCSSCCCCEEECCSSC-CBHHHHHHHHHHH---HHHCTTCCEEECTTSBSCTT
T ss_pred hccCCCeEEEECcCCc-CCHHHHHHHHHHH---HhcCCCceEEEccCCcCCcc
Confidence 3112999999999975 454 44321 13579999999999864433
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=2.4e-17 Score=137.60 Aligned_cols=173 Identities=20% Similarity=0.217 Sum_probs=130.0
Q ss_pred CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126 16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK 94 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 94 (295)
...+.++++++.++.+|..+. ..++.|++++|.+.+..+ .+..+++|++|++++|......+..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 456788899888888887655 588999999998776666 58889999999999865444444557888999999998
Q ss_pred cCcCCceeCCcc--cCccccEEeccCCCCCcccCc----CCCCCceEEccCccccccch-hhhCCCCCcEEecCCCcCCc
Q 039126 95 HCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAINELPS-SIEYLSKLVILNLGNSSRLE 167 (295)
Q Consensus 95 ~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~~~~ 167 (295)
+| .++.++... .+++|+.|++++|.+. .++. .+.+|++|++++|.++.++. .++.+++|++|++++|....
T Consensus 92 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 92 NN-QLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CC-cccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 85 455555443 4788888988888654 4443 24577888888888887766 57788889999999885444
Q ss_pred CcccccCCCCCCCeeeccCCCCCCC
Q 039126 168 GLPSKICKLKSLQHLNLSCCSNLES 192 (295)
Q Consensus 168 ~~p~~l~~l~~L~~L~l~~~~~~~~ 192 (295)
..+..+..+++|+.|++++|.+...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 3445678888999999998887654
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=148.88 Aligned_cols=192 Identities=17% Similarity=0.128 Sum_probs=150.5
Q ss_pred CCCceeEecCCCCccc-cchhh--cCCCCCcEEecCCCCCCCcCCC-----CCCCCCCcEeeccccccccccccchhccc
Q 039126 15 PKNLVSPEIPRNSIKQ-LWKVV--QRLVNLKSINLNHSEHLTEIPS-----LSLATNLESLNFQRYTSLLETHSSIRHLN 86 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~-l~~~~--~~l~~L~~L~L~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 86 (295)
.++|++|++++|.+.. .|..+ ..+++|++|++++|.+.+..+. +..+++|++|++++|......+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4669999999999885 45655 8899999999999998765552 45799999999999766555556788999
Q ss_pred CCcEEccccCcCCce--eCCc---ccCccccEEeccCCCCCcccCc-------CCCCCceEEccCcccccc-chhhhCC-
Q 039126 87 KFVARNLKHCRSLTN--LSTS---IHLESLKKLILSGCSNLMSFPE-------LFYNIKELSLDGTAINEL-PSSIEYL- 152 (295)
Q Consensus 87 ~L~~L~l~~~~~l~~--l~~~---~~~~~L~~L~l~~~~~~~~~~~-------~~~~L~~L~l~~~~i~~~-~~~~~~~- 152 (295)
+|++|++++|..... ++.. ..+++|++|++++|++. .++. .+.+|++|++++|.++.. |..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 999999999765442 2222 24889999999999753 3222 347899999999999966 7666665
Q ss_pred --CCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126 153 --SKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS 214 (295)
Q Consensus 153 --~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 214 (295)
++|++|++++|. +..+|..+. ++|++|++++|.+.+ +|. +..+ ++|+.|++++++
T Consensus 249 ~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l--~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 WSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNRLNR-APQ-PDEL--PEVDNLTLDGNP 305 (310)
T ss_dssp CCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCCCCS-CCC-TTSC--CCCSCEECSSTT
T ss_pred CcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCcCCC-Cch-hhhC--CCccEEECcCCC
Confidence 699999999984 668887774 899999999998765 333 4555 999999999864
No 84
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=2.3e-17 Score=152.64 Aligned_cols=182 Identities=15% Similarity=0.171 Sum_probs=128.1
Q ss_pred CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcccc
Q 039126 16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH 95 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 95 (295)
.+++.|++++|.++.+|..+ +++|++|++++|.+. .+| ..+++|++|++++| .++.+|. +.. +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 37888888888888777655 367888888888765 566 55778888888885 4445666 433 788888887
Q ss_pred CcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCC
Q 039126 96 CRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICK 175 (295)
Q Consensus 96 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~ 175 (295)
| .++.+|. .+++|+.|++++|.+. .+|..+.+|++|++++|.++.+|. +. ++|+.|++++| .+..+|. +..
T Consensus 130 N-~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~ 200 (571)
T 3cvr_A 130 N-QLTMLPE--LPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV 200 (571)
T ss_dssp S-CCSCCCC--CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC-
T ss_pred C-cCCCCCC--cCccccEEeCCCCccC-cCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh-HHH
Confidence 5 4555666 5778888888887644 477766778888888888887776 54 78888888887 4556766 543
Q ss_pred CCCC-------CeeeccCCCCCCCchhhhhccCCCCcceeeccccccccccc
Q 039126 176 LKSL-------QHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLS 220 (295)
Q Consensus 176 l~~L-------~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 220 (295)
+| +.|++++|.+. .+|..+..+ ++|++|++++++.-..++
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l--~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRIT-HIPENILSL--DPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp ---------CCEEEECCSSCCC-CCCGGGGGS--CTTEEEECCSSSCCHHHH
T ss_pred --hhhcccccceEEecCCCcce-ecCHHHhcC--CCCCEEEeeCCcCCCcCH
Confidence 66 88888887654 577777776 888888888765433333
No 85
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=3.1e-17 Score=151.72 Aligned_cols=166 Identities=18% Similarity=0.211 Sum_probs=70.4
Q ss_pred CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcccc
Q 039126 16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH 95 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 95 (295)
++|+.|++++|.++.+| ..+++|++|++++|.+.+ +|.+.. +|++|++++| .+..+|. .+++|+.|++++
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN 149 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC
Confidence 44444555444444444 334444455554444333 333222 4444444443 2222333 344444444444
Q ss_pred CcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCC-------cEEecCCCcCCcC
Q 039126 96 CRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKL-------VILNLGNSSRLEG 168 (295)
Q Consensus 96 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L-------~~L~l~~~~~~~~ 168 (295)
| .++.+|. .+++|+.|++++|.+. .+|....+|++|++++|.++.+|. +.. +| +.|++++| .+..
T Consensus 150 N-~l~~lp~--~l~~L~~L~Ls~N~L~-~lp~l~~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~ 221 (571)
T 3cvr_A 150 N-QLTMLPE--LPTSLEVLSVRNNQLT-FLPELPESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCREN-RITH 221 (571)
T ss_dssp S-CCSCCCC--CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCC-CC----------CCEEEECCSS-CCCC
T ss_pred C-ccCcCCC--cCCCcCEEECCCCCCC-CcchhhCCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCC-ccee
Confidence 2 2233333 2344444444444322 233322344444454444444443 221 33 44444444 2334
Q ss_pred cccccCCCCCCCeeeccCCCCCCCchhhhhc
Q 039126 169 LPSKICKLKSLQHLNLSCCSNLESFPNELRN 199 (295)
Q Consensus 169 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 199 (295)
+|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 222 lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 4444444444445555444444444444433
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=1.9e-18 Score=151.99 Aligned_cols=229 Identities=15% Similarity=0.106 Sum_probs=161.2
Q ss_pred CCCCC-CCCceeEecCCCCccccc-----hhhcCCC-CCcEEecCCCCCCCcCC-CCCCC-----CCCcEeecccccccc
Q 039126 10 SSIIR-PKNLVSPEIPRNSIKQLW-----KVVQRLV-NLKSINLNHSEHLTEIP-SLSLA-----TNLESLNFQRYTSLL 76 (295)
Q Consensus 10 p~~~~-~~~L~~L~l~~~~~~~l~-----~~~~~l~-~L~~L~L~~~~~~~~~~-~~~~l-----~~L~~L~l~~~~~~~ 76 (295)
|.+.. .++|++|++++|.++..+ ..+..++ +|++|++++|.+....+ .+..+ ++|++|++++|....
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 33444 566999999999998765 5678888 89999999998766555 34433 999999999986544
Q ss_pred ccccc----hhcc-cCCcEEccccCcCCceeCCcc------c-CccccEEeccCCCCCcc----cCc---CC-CCCceEE
Q 039126 77 ETHSS----IRHL-NKFVARNLKHCRSLTNLSTSI------H-LESLKKLILSGCSNLMS----FPE---LF-YNIKELS 136 (295)
Q Consensus 77 ~~~~~----~~~l-~~L~~L~l~~~~~l~~l~~~~------~-~~~L~~L~l~~~~~~~~----~~~---~~-~~L~~L~ 136 (295)
..+.. +..+ ++|++|++++|. ++..+... . .++|++|++++|.+... ++. .. .+|++|+
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 44443 3444 899999999975 44444321 1 36999999999976532 222 22 3899999
Q ss_pred ccCccccccc-h----hhhCC-CCCcEEecCCCcCCcC-----cccccCC-CCCCCeeeccCCCCCCCchhhh----hcc
Q 039126 137 LDGTAINELP-S----SIEYL-SKLVILNLGNSSRLEG-----LPSKICK-LKSLQHLNLSCCSNLESFPNEL----RNL 200 (295)
Q Consensus 137 l~~~~i~~~~-~----~~~~~-~~L~~L~l~~~~~~~~-----~p~~l~~-l~~L~~L~l~~~~~~~~~~~~l----~~~ 200 (295)
+++|.++... . .+... ++|+.|++++|. ++. ++..+.. .++|++|++++|.+.+..+..+ ..+
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 9999997443 2 34455 599999999995 443 5555555 4599999999998877665443 334
Q ss_pred CCCCcceeeccccccccccccc----chhhhccCCcccEEeecCCCC
Q 039126 201 FPCDLYDIEAHWCSSLETLSGL----SIIFTKISRNTQSFDFINCFK 243 (295)
Q Consensus 201 ~~~~L~~L~l~~~~~l~~~~~~----~~~~~~~~~~L~~L~l~~c~~ 243 (295)
++|++|++++|. +..+... .......+++|++|+++++.-
T Consensus 253 --~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 253 --KHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp --TTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred --CCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 899999999975 2222221 011124678899999999863
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.8e-17 Score=140.24 Aligned_cols=167 Identities=22% Similarity=0.270 Sum_probs=81.8
Q ss_pred CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK 94 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 94 (295)
+++|+.|++++|.+..++ .++.+++|++|++++|.+.+.. .+..+++|++|++++|. ++.++ .+..+++|++|+++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECT
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCc-ccccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEECC
Confidence 444555555555544443 2444555555555555433222 24445555555555432 22222 24444444444444
Q ss_pred cCcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccC
Q 039126 95 HCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKIC 174 (295)
Q Consensus 95 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~ 174 (295)
+| .++.++....++ +|++|++++|.++.+ ..+..+++|+.|++++|. +..++. +.
T Consensus 121 ~n-~i~~~~~l~~l~---------------------~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~ 175 (291)
T 1h6t_A 121 HN-GISDINGLVHLP---------------------QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LA 175 (291)
T ss_dssp TS-CCCCCGGGGGCT---------------------TCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GT
T ss_pred CC-cCCCChhhcCCC---------------------CCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hc
Confidence 43 222222222234 455555555555554 345566666666666663 344433 66
Q ss_pred CCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126 175 KLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS 214 (295)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 214 (295)
.+++|+.|++++|.+.+ ++. +..+ ++|+.|++++++
T Consensus 176 ~l~~L~~L~L~~N~i~~-l~~-l~~l--~~L~~L~l~~n~ 211 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD-LRA-LAGL--KNLDVLELFSQE 211 (291)
T ss_dssp TCTTCCEEECCSSCCCB-CGG-GTTC--TTCSEEEEEEEE
T ss_pred CCCccCEEECCCCcCCC-Chh-hccC--CCCCEEECcCCc
Confidence 66666666666665433 332 4444 666666666643
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=8.6e-17 Score=140.78 Aligned_cols=216 Identities=16% Similarity=0.172 Sum_probs=167.2
Q ss_pred eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeecccccccccccc-chhcccCCcEEcccc
Q 039126 19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKH 95 (295)
Q Consensus 19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~ 95 (295)
++++.++++++++|..+ .+++++|+|++|.+. .+| .|..+++|++|++++|...+.++. .+.++++++.+...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56788889999999766 368999999999865 555 489999999999999887787775 478899988766666
Q ss_pred CcCCceeCCcc--cCccccEEeccCCCCCcccCc-CC---CCCceEEccC-ccccccchh-hhCC-CCCcEEecCCCcCC
Q 039126 96 CRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE-LF---YNIKELSLDG-TAINELPSS-IEYL-SKLVILNLGNSSRL 166 (295)
Q Consensus 96 ~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~-~~---~~L~~L~l~~-~~i~~~~~~-~~~~-~~L~~L~l~~~~~~ 166 (295)
+..++.++... .+++|++|++++|.+. .+|. .+ .++..+++.+ +.+..++.. +..+ ..++.|++++| .+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i 166 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GI 166 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CC
T ss_pred CCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cc
Confidence 57788886554 4899999999998754 4443 22 2455777766 467777653 4444 56899999998 57
Q ss_pred cCcccccCCCCCCCeeeccCCCCCCCchhh-hhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCCh
Q 039126 167 EGLPSKICKLKSLQHLNLSCCSNLESFPNE-LRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKLH 245 (295)
Q Consensus 167 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 245 (295)
+.+|..+....+|+.+++.+++..+.+|.. +..+ ++|+.|+++++ .++.++. ..+.+|+.|.+.++.+++
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l--~~L~~LdLs~N-~l~~lp~------~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA--SGPVILDISRT-RIHSLPS------YGLENLKKLRARSTYNLK 237 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE--ECCSEEECTTS-CCCCCCS------SSCTTCCEEECTTCTTCC
T ss_pred cCCChhhccccchhHHhhccCCcccCCCHHHhccC--cccchhhcCCC-CcCccCh------hhhccchHhhhccCCCcC
Confidence 778877777889999999988888888865 5677 99999999986 6898887 567788888887777666
Q ss_pred hhh
Q 039126 246 QNV 248 (295)
Q Consensus 246 ~~~ 248 (295)
..+
T Consensus 238 ~lP 240 (350)
T 4ay9_X 238 KLP 240 (350)
T ss_dssp CCC
T ss_pred cCC
Confidence 553
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=5.2e-16 Score=129.43 Aligned_cols=162 Identities=21% Similarity=0.238 Sum_probs=130.8
Q ss_pred CCCCCCcCCCCCCCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc
Q 039126 2 HGCPFKSLSSIIRPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH 79 (295)
Q Consensus 2 ~~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 79 (295)
.+..++++|..+. ++++.|++++|.+..++ ..++++++|++|++++|.+.+..+ .+..+++|++|++++|......+
T Consensus 22 ~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 22 QGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp TTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh
Confidence 3456777776543 78999999999999876 468999999999999999877666 48999999999999965444444
Q ss_pred cchhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc-C---CCCCceEEccCccccccch-hhhCC
Q 039126 80 SSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE-L---FYNIKELSLDGTAINELPS-SIEYL 152 (295)
Q Consensus 80 ~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~-~---~~~L~~L~l~~~~i~~~~~-~~~~~ 152 (295)
..+..+++|++|++++| .++.++... .+++|+.|++++|.+. .++. . +.+|++|++++|.++.++. .+..+
T Consensus 101 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 56789999999999995 566776653 4899999999999754 4443 3 3578899999999997765 67889
Q ss_pred CCCcEEecCCCcCC
Q 039126 153 SKLVILNLGNSSRL 166 (295)
Q Consensus 153 ~~L~~L~l~~~~~~ 166 (295)
++|+.|++++|...
T Consensus 179 ~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 179 GKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSCCBC
T ss_pred CCCCEEEeeCCcee
Confidence 99999999998643
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=1.7e-17 Score=147.16 Aligned_cols=226 Identities=12% Similarity=0.058 Sum_probs=163.5
Q ss_pred CCCCceeEecCCCCcc----ccchh-------hcCCCCCcEEecCCCCCCCc----CC-CCCCCCCCcEeeccccccccc
Q 039126 14 RPKNLVSPEIPRNSIK----QLWKV-------VQRLVNLKSINLNHSEHLTE----IP-SLSLATNLESLNFQRYTSLLE 77 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~----~l~~~-------~~~l~~L~~L~L~~~~~~~~----~~-~~~~l~~L~~L~l~~~~~~~~ 77 (295)
.+++|++|+|++|.+. .+|.. +..+++|++|++++|.+... ++ .+..+++|++|++++|.....
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 5899999999998554 23444 47899999999999998663 44 478899999999999865332
Q ss_pred ----cccchhcc---------cCCcEEccccCcCC-ceeC---Ccc-cCccccEEeccCCCCCcc-----cC---cCCCC
Q 039126 78 ----THSSIRHL---------NKFVARNLKHCRSL-TNLS---TSI-HLESLKKLILSGCSNLMS-----FP---ELFYN 131 (295)
Q Consensus 78 ----~~~~~~~l---------~~L~~L~l~~~~~l-~~l~---~~~-~~~~L~~L~l~~~~~~~~-----~~---~~~~~ 131 (295)
++..+..+ ++|++|++++|..- ..++ ..+ .+++|+.|++++|.+... .+ ....+
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 33334455 89999999997543 2233 122 378999999999976521 22 24568
Q ss_pred CceEEccCccc-----cccchhhhCCCCCcEEecCCCcCCcC----ccccc--CCCCCCCeeeccCCCCCC----Cchhh
Q 039126 132 IKELSLDGTAI-----NELPSSIEYLSKLVILNLGNSSRLEG----LPSKI--CKLKSLQHLNLSCCSNLE----SFPNE 196 (295)
Q Consensus 132 L~~L~l~~~~i-----~~~~~~~~~~~~L~~L~l~~~~~~~~----~p~~l--~~l~~L~~L~l~~~~~~~----~~~~~ 196 (295)
|++|++++|.+ ..+|..+..+++|++|++++|..... ++..+ +.+++|++|++++|.+.+ .+|..
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~ 297 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence 99999999999 46788888999999999999964433 45556 459999999999998877 47887
Q ss_pred h-hccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126 197 L-RNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 197 l-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
+ ..+ ++|++|++++|. ++........+...+++++...+..-.
T Consensus 298 l~~~l--~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~~~d 341 (386)
T 2ca6_A 298 IDEKM--PDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELDELD 341 (386)
T ss_dssp HHHHC--TTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEECCCC
T ss_pred HHhcC--CCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhhhcc
Confidence 7 546 999999999975 444332122333456666655554443
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=9.1e-17 Score=149.96 Aligned_cols=174 Identities=22% Similarity=0.273 Sum_probs=120.5
Q ss_pred CCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCC
Q 039126 9 LSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKF 88 (295)
Q Consensus 9 ~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (295)
+.....+++|+.|++++|.+..++ .++.|++|+.|+|++|.+.+ ++.+..+++|++|++++| .+..++ .+..+++|
T Consensus 36 ~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 36 AVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKL 111 (605)
T ss_dssp EECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSS-CCCCCT-TSTTCTTC
T ss_pred ccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCC-CCCCCh-hhccCCCC
Confidence 333335777888888888877775 47778888888888887544 334777888888888875 344444 57778888
Q ss_pred cEEccccCcCCceeCCcccCccccEEeccCCCCCcccC--cCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCC
Q 039126 89 VARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFP--ELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRL 166 (295)
Q Consensus 89 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~ 166 (295)
+.|++++| .+..++....+++|+.|+|++|.+.+ ++ ..+.+|+.|++++|.+..++. +..+++|+.|++++| .+
T Consensus 112 ~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~i 187 (605)
T 1m9s_A 112 KSLSLEHN-GISDINGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HI 187 (605)
T ss_dssp CEEECTTS-CCCCCGGGGGCTTCSEEECCSSCCCC-CGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CC
T ss_pred CEEEecCC-CCCCCccccCCCccCEEECCCCccCC-chhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC-CC
Confidence 88888875 34455544457788888888876433 32 234567788888888776655 777788888888877 34
Q ss_pred cCcccccCCCCCCCeeeccCCCCCC
Q 039126 167 EGLPSKICKLKSLQHLNLSCCSNLE 191 (295)
Q Consensus 167 ~~~p~~l~~l~~L~~L~l~~~~~~~ 191 (295)
..+| .+..+++|+.|++++|.+.+
T Consensus 188 ~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 188 SDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred CCCh-HHccCCCCCEEEccCCcCcC
Confidence 5554 47778888888888776554
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=1.3e-17 Score=151.00 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=33.2
Q ss_pred CCCCceeEecCCCCcccc-chh-hcCCC----CCcEEecCCCCCCC----cCC-CCCCCCCCcEeeccccc
Q 039126 14 RPKNLVSPEIPRNSIKQL-WKV-VQRLV----NLKSINLNHSEHLT----EIP-SLSLATNLESLNFQRYT 73 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l-~~~-~~~l~----~L~~L~L~~~~~~~----~~~-~~~~l~~L~~L~l~~~~ 73 (295)
.+++|++|++++|.+.+. +.. ...+. +|++|++++|.+.. .++ .+..+++|++|++++|.
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 356667777776666532 222 23343 56667776666543 223 35666666666666654
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=1e-15 Score=143.56 Aligned_cols=225 Identities=16% Similarity=0.137 Sum_probs=140.2
Q ss_pred CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCc--CC-CCCCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTE--IP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVAR 91 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~--~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 91 (295)
++.++.+++..+.+...+ ....++.|+.|+++.|.+... .+ .+..+.+|+++++..+. ....+..+..+++|+.+
T Consensus 348 l~~L~~l~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHL 425 (635)
T ss_dssp CTTCCEEEEESCCSCCBC-CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEE
T ss_pred chhhhhcccccccCCCCc-ccccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccch
Confidence 566777777776555433 234577777777777765332 22 24556677777777643 33444456677777777
Q ss_pred ccccCcCCceeCCcc--cCccccEEeccCCCCCcccCcC---CCCCceEEccCcccc--ccchhhhCCCCCcEEecCCCc
Q 039126 92 NLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAIN--ELPSSIEYLSKLVILNLGNSS 164 (295)
Q Consensus 92 ~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~~~ 164 (295)
++.++......+... .+.+++.++++.|......+.. ...++.|++++|.+. ..|..+..+++|+.|++++|.
T Consensus 426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~ 505 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505 (635)
T ss_dssp ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc
Confidence 777654433333222 3677777777777654443332 346677777777643 345667777888888888875
Q ss_pred CCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126 165 RLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL 244 (295)
Q Consensus 165 ~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 244 (295)
..+..|..+.++++|++|++++|.+.+..+..+..+ ++|++|+++++. ++.++.... ....++|++|+++++|--
T Consensus 506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l--~~L~~L~Ls~N~-l~~~~~~~l--~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL--NSLQVLDYSLNH-IMTSKKQEL--QHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTC--TTCCEEECTTSC-CCBCCSSCT--TCCCTTCCEEECTTCCBC
T ss_pred cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCC--CCCCEEECCCCc-CCCCCHHHH--HhhhCcCCEEEeeCCCCc
Confidence 444456677788888888888877766666667776 788888888754 455443211 122367888888776543
Q ss_pred hh
Q 039126 245 HQ 246 (295)
Q Consensus 245 ~~ 246 (295)
-+
T Consensus 581 C~ 582 (635)
T 4g8a_A 581 CT 582 (635)
T ss_dssp CS
T ss_pred cc
Confidence 33
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=2.6e-17 Score=144.76 Aligned_cols=220 Identities=13% Similarity=0.080 Sum_probs=156.4
Q ss_pred eEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-----CCCCCC-CCcEeeccccccccccccchhcc-----cC
Q 039126 20 SPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-----SLSLAT-NLESLNFQRYTSLLETHSSIRHL-----NK 87 (295)
Q Consensus 20 ~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-----~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 87 (295)
.+++++|.+++. |..+....+|++|++++|.+....+ .+..++ +|++|++++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 467889998865 4445666669999999998655443 266788 89999999986555545555554 99
Q ss_pred CcEEccccCcCCceeCCc-c-----cC-ccccEEeccCCCCCcccCcC--------CCCCceEEccCcccc-----ccch
Q 039126 88 FVARNLKHCRSLTNLSTS-I-----HL-ESLKKLILSGCSNLMSFPEL--------FYNIKELSLDGTAIN-----ELPS 147 (295)
Q Consensus 88 L~~L~l~~~~~l~~l~~~-~-----~~-~~L~~L~l~~~~~~~~~~~~--------~~~L~~L~l~~~~i~-----~~~~ 147 (295)
|++|++++|. ++..+.. + .+ ++|+.|++++|.+....+.. ..+|++|++++|.++ .++.
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999975 4433322 1 23 79999999999754332221 248999999999988 4455
Q ss_pred hhhCCC-CCcEEecCCCcCCcCcccc----cCCC-CCCCeeeccCCCCCCC----chhhhhccCCCCcceeecccccccc
Q 039126 148 SIEYLS-KLVILNLGNSSRLEGLPSK----ICKL-KSLQHLNLSCCSNLES----FPNELRNLFPCDLYDIEAHWCSSLE 217 (295)
Q Consensus 148 ~~~~~~-~L~~L~l~~~~~~~~~p~~----l~~l-~~L~~L~l~~~~~~~~----~~~~l~~~~~~~L~~L~l~~~~~l~ 217 (295)
.+..++ +|++|++++|......+.. +..+ ++|++|++++|.+.+. ++..+... +++|++|+++++. ++
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~-l~ 238 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI-PNHVVSLNLCLNC-LH 238 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS-CTTCCEEECCSSC-CC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC-CCCceEEECcCCC-CC
Confidence 566665 9999999999644444433 4455 5999999999987664 45555542 3699999999974 56
Q ss_pred ccccc-chhhhccCCcccEEeecCCC
Q 039126 218 TLSGL-SIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 218 ~~~~~-~~~~~~~~~~L~~L~l~~c~ 242 (295)
..+.. .......+++|++|++++|.
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCC
Confidence 55431 12223578899999999984
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=6.7e-16 Score=125.01 Aligned_cols=171 Identities=15% Similarity=0.136 Sum_probs=106.5
Q ss_pred eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc-chhcccCCcEEccccC
Q 039126 19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKHC 96 (295)
Q Consensus 19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~ 96 (295)
+.++.+++.++.+|..+ .++|++|++++|.+.+..+ .+..+++|++|++++| .++.++. .+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 35556666666665433 3466667776666543333 2566666777777664 3334443 3456666777777664
Q ss_pred cCCceeCCcc--cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccchh-hhCCCCCcEEecCCCcCCcCcc
Q 039126 97 RSLTNLSTSI--HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSSRLEGLP 170 (295)
Q Consensus 97 ~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~~~p 170 (295)
.++.++... .+++|+.|++++|.+.+..+. .+.+|++|++++|.++.++.. +..+++|+.|++++|.
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~------ 159 (208)
T 2o6s_A 87 -QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP------ 159 (208)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC------
T ss_pred -cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC------
Confidence 344444432 366777777776654322222 234667777777777766654 6778888889888884
Q ss_pred cccCCCCCCCeeeccCCCCCCCchhhhhcc
Q 039126 171 SKICKLKSLQHLNLSCCSNLESFPNELRNL 200 (295)
Q Consensus 171 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 200 (295)
..+.++.|+.|+++.|.+.+.+|..++.+
T Consensus 160 -~~~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 160 -WDCTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp -BCCCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred -eecCCCCHHHHHHHHHhCCceeeccCccc
Confidence 23457788888888888888888877665
No 96
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=5.8e-19 Score=163.72 Aligned_cols=208 Identities=16% Similarity=0.167 Sum_probs=146.0
Q ss_pred CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEc-
Q 039126 14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN- 92 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~- 92 (295)
..++|+.|+|++|.++.+|..++.|++|+.|++++|......|. .+..++..+..|..+..+++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHHHHHHHHhcccCcc
Confidence 47778888888888888888888888888888765531111110 0011123334455566667777766
Q ss_pred cccCcCCceeCCc---------ccCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEecC
Q 039126 93 LKHCRSLTNLSTS---------IHLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILNLG 161 (295)
Q Consensus 93 l~~~~~l~~l~~~---------~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~ 161 (295)
++. ..+..++.. .....|+.|++++|.+ ..+|. .+.+|+.|++++|.++.+|..++.+++|+.|+++
T Consensus 417 l~~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 417 MRA-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS 494 (567)
T ss_dssp GGH-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCC-SSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC
T ss_pred hhh-cccchhhhhhhhcccccccCccCceEEEecCCCC-CCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECC
Confidence 333 222222210 0124688999999864 44665 2337889999999999999999999999999999
Q ss_pred CCcCCcCcccccCCCCCCCeeeccCCCCCCCc-hhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEee
Q 039126 162 NSSRLEGLPSKICKLKSLQHLNLSCCSNLESF-PNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDF 238 (295)
Q Consensus 162 ~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 238 (295)
+|. +..+| .++++++|++|++++|.+.+.. |..+..+ ++|+.|++++++ ++.++.........+++|+.|++
T Consensus 495 ~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l--~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 495 DNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSC--PRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGC--TTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcC--CCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 984 56688 7999999999999999887765 8999998 999999999865 67666544444456888888853
No 97
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=1.7e-17 Score=150.16 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=81.6
Q ss_pred CCCCceeEecCCCCcccc-----chhh-cCCCCCcEEecCCCCCCCcC----C-CCCCCCCCcEeeccccccccccccch
Q 039126 14 RPKNLVSPEIPRNSIKQL-----WKVV-QRLVNLKSINLNHSEHLTEI----P-SLSLATNLESLNFQRYTSLLETHSSI 82 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l-----~~~~-~~l~~L~~L~L~~~~~~~~~----~-~~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (295)
.+++|++|++++|.+... ...+ ...++|++|++++|.+.... + .+..+++|++|++++|......+..+
T Consensus 111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 190 (461)
T 1z7x_W 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL 190 (461)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence 578888888888887632 2222 23567888888888765533 2 24556777777777765322222222
Q ss_pred h-----cccCCcEEccccCcCCce----eCCcc-cCccccEEeccCCCCCcc----c----CcCCCCCceEEccCccccc
Q 039126 83 R-----HLNKFVARNLKHCRSLTN----LSTSI-HLESLKKLILSGCSNLMS----F----PELFYNIKELSLDGTAINE 144 (295)
Q Consensus 83 ~-----~l~~L~~L~l~~~~~l~~----l~~~~-~~~~L~~L~l~~~~~~~~----~----~~~~~~L~~L~l~~~~i~~ 144 (295)
. ..++|++|++++|..-.. ++..+ .+++|+.|++++|.+... + .....+|++|++++|.++.
T Consensus 191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 1 244667777766532211 12211 256666666666643221 1 1123456666666665553
Q ss_pred -----cchhhhCCCCCcEEecCCC
Q 039126 145 -----LPSSIEYLSKLVILNLGNS 163 (295)
Q Consensus 145 -----~~~~~~~~~~L~~L~l~~~ 163 (295)
++..+..+++|++|++++|
T Consensus 271 ~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 271 KGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHHhhCCCcceEECCCC
Confidence 4444555555666666555
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=7.2e-16 Score=131.47 Aligned_cols=187 Identities=19% Similarity=0.270 Sum_probs=129.4
Q ss_pred CceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccC
Q 039126 17 NLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHC 96 (295)
Q Consensus 17 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 96 (295)
++..+.+..+.+.++. ....+++|+.|++++|.+ ..++.+..+++|++|++++| .+..++. +..+++|++|++++|
T Consensus 25 ~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred HHHHHHhcCCCccccc-chhhcCcccEEEccCCCc-ccChhHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC
Confidence 3444556655555432 234677888888888864 34566777888888888875 3444443 667777777777764
Q ss_pred cCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCC
Q 039126 97 RSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKL 176 (295)
Q Consensus 97 ~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l 176 (295)
.++.++....+++| ++|++++|.++.++ .+..+++|+.|++++|. +..+ ..+..+
T Consensus 101 -~l~~~~~l~~l~~L---------------------~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l 155 (291)
T 1h6t_A 101 -KVKDLSSLKDLKKL---------------------KSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRL 155 (291)
T ss_dssp -CCCCGGGGTTCTTC---------------------CEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGC
T ss_pred -cCCCChhhccCCCC---------------------CEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccC
Confidence 33444332234444 45555555555553 46788999999999984 5555 468899
Q ss_pred CCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCC
Q 039126 177 KSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 177 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
++|+.|++++|.+.+..+ +..+ ++|++|+++++ .++.++. ...+++|+.|++++++
T Consensus 156 ~~L~~L~L~~N~l~~~~~--l~~l--~~L~~L~L~~N-~i~~l~~-----l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 156 TKLDTLSLEDNQISDIVP--LAGL--TKLQNLYLSKN-HISDLRA-----LAGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTC--TTCCEEECCSS-CCCBCGG-----GTTCTTCSEEEEEEEE
T ss_pred CCCCEEEccCCccccchh--hcCC--CccCEEECCCC-cCCCChh-----hccCCCCCEEECcCCc
Confidence 999999999998765444 7776 99999999987 5677654 2689999999999874
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=2.3e-16 Score=126.72 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=84.7
Q ss_pred cCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcc-cCccccEE
Q 039126 36 QRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKL 114 (295)
Q Consensus 36 ~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L 114 (295)
+.+++|+.|++++|.+. .+|.+..+++|++|++++| .+..++ .+..+++|++|++++|..-...+..+ .+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34455555555555433 3444555555555555554 222222 44455555555555543222222222 25566666
Q ss_pred eccCCCCCcccCc---CCCCCceEEccCcc-ccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCC
Q 039126 115 ILSGCSNLMSFPE---LFYNIKELSLDGTA-INELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL 190 (295)
Q Consensus 115 ~l~~~~~~~~~~~---~~~~L~~L~l~~~~-i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 190 (295)
++++|.+....+. .+.+|++|++++|. ++.++ .+..+++|+.|++++|. +..++ .+.++++|++|++++|.+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcccC
Confidence 6666554433332 23456677777776 66666 57788889999998874 55565 5778889999999887653
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=1.2e-15 Score=123.40 Aligned_cols=179 Identities=16% Similarity=0.101 Sum_probs=134.7
Q ss_pred CCCCcCCCCCCCCCceeEecCCCCccccchh-hcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeecccccccccccc-
Q 039126 4 CPFKSLSSIIRPKNLVSPEIPRNSIKQLWKV-VQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHS- 80 (295)
Q Consensus 4 ~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~- 80 (295)
..+.++|... .+++++|++++|.++.++.. ++.+++|++|++++|.+.+..+. +..+++|++|++++|. ++.++.
T Consensus 17 ~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 94 (208)
T 2o6s_A 17 QGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNG 94 (208)
T ss_dssp SCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred CCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHh
Confidence 3455566332 67899999999999988754 68999999999999987644443 7899999999999965 455554
Q ss_pred chhcccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccCc---CCCCCceEEccCccccccchhhhCCCCC
Q 039126 81 SIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPE---LFYNIKELSLDGTAINELPSSIEYLSKL 155 (295)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~~~~~~~L 155 (295)
.+..+++|++|++++| .++.++... .+++|+.|++++|.+.+..+. .+.+|++|++++|.+. +.+++|
T Consensus 95 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l 167 (208)
T 2o6s_A 95 VFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGI 167 (208)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTT
T ss_pred HhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCH
Confidence 4789999999999995 556666543 489999999999875543332 2457889999999765 345688
Q ss_pred cEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchh
Q 039126 156 VILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPN 195 (295)
Q Consensus 156 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~ 195 (295)
+.|+++.|...+.+|.+++.++. +...|...+..+.
T Consensus 168 ~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~ 203 (208)
T 2o6s_A 168 RYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVR 203 (208)
T ss_dssp HHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGG
T ss_pred HHHHHHHHhCCceeeccCccccC----CccccccCCCcce
Confidence 99999988888899988887765 4445544343333
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=1.1e-15 Score=142.60 Aligned_cols=193 Identities=18% Similarity=0.209 Sum_probs=152.9
Q ss_pred CCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK 94 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 94 (295)
+..+..+.+..+.+..+.. +..+.+|+.|++++|.+ ..++.+..+++|++|++++|. +..++. +..+++|+.|+++
T Consensus 20 l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECc
Confidence 4456667777777776543 46889999999999985 566789999999999999964 455554 8899999999999
Q ss_pred cCcCCceeCCcccCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccc
Q 039126 95 HCRSLTNLSTSIHLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSK 172 (295)
Q Consensus 95 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 172 (295)
+| .+..++....+++|+.|++++|.+. .++. .+.+|+.|++++|.++.+ ..+..+++|+.|++++|. +..++.
T Consensus 96 ~N-~l~~l~~l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~- 170 (605)
T 1m9s_A 96 EN-KIKDLSSLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP- 170 (605)
T ss_dssp SS-CCCCCTTSTTCTTCCEEECTTSCCC-CCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-
T ss_pred CC-CCCCChhhccCCCCCEEEecCCCCC-CCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-
Confidence 96 5666775556999999999998754 3442 356899999999999988 568899999999999985 455544
Q ss_pred cCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccc
Q 039126 173 ICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSG 221 (295)
Q Consensus 173 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 221 (295)
+..+++|+.|++++|.+.+ + ..+..+ ++|+.|++++|+ +...+.
T Consensus 171 l~~l~~L~~L~Ls~N~i~~-l-~~l~~l--~~L~~L~L~~N~-l~~~p~ 214 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISD-L-RALAGL--KNLDVLELFSQE-CLNKPI 214 (605)
T ss_dssp GTTCTTCCEEECCSSCCCB-C-GGGTTC--TTCSEEECCSEE-EECCCC
T ss_pred hccCCCCCEEECcCCCCCC-C-hHHccC--CCCCEEEccCCc-CcCCcc
Confidence 8899999999999987755 4 357776 999999999875 444443
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1.1e-16 Score=134.64 Aligned_cols=167 Identities=19% Similarity=0.305 Sum_probs=113.2
Q ss_pred CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126 14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL 93 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 93 (295)
.+.++..++++++.+++++ .+..+++|++|++++|.+ ..++.+..+++|++|++++| .+..++. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccchHHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 4666778888888888877 578889999999999975 45677888899999999885 4555555 788888888888
Q ss_pred ccCcCCceeCCcccCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCccc
Q 039126 94 KHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPS 171 (295)
Q Consensus 94 ~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 171 (295)
++| .++.++.... ++|+.|++++|.+. .++. .+.+|++|++++|.++.++ .++.+++|+.|++++|. +..+ .
T Consensus 93 ~~N-~l~~l~~~~~-~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~-~ 166 (263)
T 1xeu_A 93 NRN-RLKNLNGIPS-ACLSRLFLDNNELR-DTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNT-G 166 (263)
T ss_dssp CSS-CCSCCTTCCC-SSCCEEECCSSCCS-BSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBC-T
T ss_pred CCC-ccCCcCcccc-CcccEEEccCCccC-CChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-Ccch-H
Confidence 885 4555554434 67777777776533 2322 2335666666666666654 45566666666666663 3333 3
Q ss_pred ccCCCCCCCeeeccCCCCC
Q 039126 172 KICKLKSLQHLNLSCCSNL 190 (295)
Q Consensus 172 ~l~~l~~L~~L~l~~~~~~ 190 (295)
.+..+++|+.|++++|.+.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCccc
Confidence 4566666666666665543
No 103
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=9.7e-15 Score=136.85 Aligned_cols=203 Identities=21% Similarity=0.236 Sum_probs=140.6
Q ss_pred CCCCCCCceeEecCCCCccc---cchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeecccccccccccc-chhccc
Q 039126 11 SIIRPKNLVSPEIPRNSIKQ---LWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHS-SIRHLN 86 (295)
Q Consensus 11 ~~~~~~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~ 86 (295)
....+++|+.+++++|.+.. .+.....+..|+++++..+......+.+..+++|+.++++.++.....+. .+..+.
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 34457788888888887653 34566777888888888887555445677788888888887665555443 467788
Q ss_pred CCcEEccccCcCCceeCCcc-cCccccEEeccCCCCCcc-cCcC---CCCCceEEccCcccccc-chhhhCCCCCcEEec
Q 039126 87 KFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMS-FPEL---FYNIKELSLDGTAINEL-PSSIEYLSKLVILNL 160 (295)
Q Consensus 87 ~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~-~~~~---~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l 160 (295)
+++.+++++|......+... .+++++.|++++|..... .|.. +.+|++|++++|.++.+ |..++.+++|+.|++
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 88888888754333333333 377888888888764443 3333 34677888888888865 556778888888888
Q ss_pred CCCcCCcCcccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeeccccc
Q 039126 161 GNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCS 214 (295)
Q Consensus 161 ~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 214 (295)
++|......|..+.++++|++|++++|.+.+..|..+..+ |++|++|++++++
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~~L~~L~L~~Np 578 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF-PSSLAFLNLTQND 578 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC-CTTCCEEECTTCC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh-hCcCCEEEeeCCC
Confidence 8875434445567788888888888888777777776663 4678888887643
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=5.2e-15 Score=118.76 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=123.3
Q ss_pred CCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEcc
Q 039126 14 RPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNL 93 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 93 (295)
.+++|+.|++++|.+..++ .+..+++|++|++++|. ....+.+..+++|++|++++|......+..+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4789999999999999888 78999999999999995 345567899999999999997666557778899999999999
Q ss_pred ccCcCCceeCCcc-cCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEecCCCc
Q 039126 94 KHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSS 164 (295)
Q Consensus 94 ~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~ 164 (295)
++|......+..+ .+++|+.|++++|...+.++. .+++|++|++++|.++.++ .+..+++|+.|++++|.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 9975544344433 489999999999975666663 3458899999999999887 67889999999999985
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=2.3e-14 Score=117.80 Aligned_cols=152 Identities=20% Similarity=0.218 Sum_probs=102.9
Q ss_pred ceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc-chhcccCCcEEcccc
Q 039126 18 LVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKH 95 (295)
Q Consensus 18 L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~ 95 (295)
.+.++.+++.++.+|..+. ++|++|++++|.+.+..| .+..+++|++|++++|. ++.++. .+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 4568888888888886554 788888888888776656 47788888888888854 455553 356677777777776
Q ss_pred CcCCceeCCcccCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcc-cccC
Q 039126 96 CRSLTNLSTSIHLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLP-SKIC 174 (295)
Q Consensus 96 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~ 174 (295)
| .++.++.... ..+.+|++|++++|.++.+|..+..+++|+.|++++|. +..+| ..+.
T Consensus 98 N-~l~~l~~~~~-------------------~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 156 (229)
T 3e6j_A 98 N-QLTVLPSAVF-------------------DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFD 156 (229)
T ss_dssp S-CCCCCCTTTT-------------------TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTT
T ss_pred C-cCCccChhHh-------------------CcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHh
Confidence 4 3444433210 11234455555555566677777788888888888874 44554 4577
Q ss_pred CCCCCCeeeccCCCCCCCc
Q 039126 175 KLKSLQHLNLSCCSNLESF 193 (295)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~~ 193 (295)
.+++|+.|++++|.+....
T Consensus 157 ~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TCTTCCEEECTTSCBCTTB
T ss_pred CCCCCCEEEeeCCCccCCc
Confidence 8888888888888776554
No 106
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=1.2e-16 Score=149.12 Aligned_cols=230 Identities=10% Similarity=-0.003 Sum_probs=158.6
Q ss_pred CCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-C-CCCCCCCcEeeccccccccccccchhcccCCcE
Q 039126 13 IRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-S-LSLATNLESLNFQRYTSLLETHSSIRHLNKFVA 90 (295)
Q Consensus 13 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 90 (295)
..+++|+.|+++++....+|..+..+++|++|++++|.+..... . +..+++|++|+++++-.-..++.....+++|+.
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 35778888888887666778888889999999999998544333 2 578899999999854333344444577889999
Q ss_pred Ecccc----------CcCCceeCCc---ccCccccEEeccCCCCCcccC----cCCCCCceEEcc----Cccccc-----
Q 039126 91 RNLKH----------CRSLTNLSTS---IHLESLKKLILSGCSNLMSFP----ELFYNIKELSLD----GTAINE----- 144 (295)
Q Consensus 91 L~l~~----------~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~----~~~i~~----- 144 (295)
|++++ |..++..... ..+++|++|++..+...+..+ ..+++|++|+++ .+.++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 99984 5555532211 137899999997665544322 335679999986 456664
Q ss_pred -cchhhhCCCCCcEEecCCCcC-C-cCcccccC-CCCCCCeeeccCCCCCCC-chhhhhccCCCCcceeecccccccccc
Q 039126 145 -LPSSIEYLSKLVILNLGNSSR-L-EGLPSKIC-KLKSLQHLNLSCCSNLES-FPNELRNLFPCDLYDIEAHWCSSLETL 219 (295)
Q Consensus 145 -~~~~~~~~~~L~~L~l~~~~~-~-~~~p~~l~-~l~~L~~L~l~~~~~~~~-~~~~l~~~~~~~L~~L~l~~~~~l~~~ 219 (295)
++..+..+++|+.|+++.|.. + ...+..+. .+++|++|++++|.+.+. ++..+..+ ++|++|++++|. ++..
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--~~L~~L~l~~n~-l~~~ 503 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC--PNLQKLEMRGCC-FSER 503 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC--TTCCEEEEESCC-CBHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC--cccCeeeccCCC-CcHH
Confidence 334466789999999977642 2 22222333 488899999999887653 34445566 899999999987 5543
Q ss_pred cccchhhhccCCcccEEeecCCCCChhhh
Q 039126 220 SGLSIIFTKISRNTQSFDFINCFKLHQNV 248 (295)
Q Consensus 220 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 248 (295)
.. ..+...+++|++|++++|. ++...
T Consensus 504 ~~--~~~~~~l~~L~~L~ls~n~-it~~~ 529 (592)
T 3ogk_B 504 AI--AAAVTKLPSLRYLWVQGYR-ASMTG 529 (592)
T ss_dssp HH--HHHHHHCSSCCEEEEESCB-CCTTC
T ss_pred HH--HHHHHhcCccCeeECcCCc-CCHHH
Confidence 22 2223578999999999997 66553
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=1.1e-14 Score=127.84 Aligned_cols=169 Identities=18% Similarity=0.202 Sum_probs=119.1
Q ss_pred eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC-CC-CCCCCcEeeccccccccccccchhcccCCcEEccccC
Q 039126 19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS-LS-LATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHC 96 (295)
Q Consensus 19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 96 (295)
+.++++++.++.+|..+. ..++.|+|++|.+.+..+. +. .+++|++|++++|......+..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578888888888886553 4588899999987655553 55 8889999999886443333355888889999999885
Q ss_pred cCCceeCCcc--cCccccEEeccCCCCCcccCcC---CCCCceEEccCccccccchhh----hCCCCCcEEecCCCcCCc
Q 039126 97 RSLTNLSTSI--HLESLKKLILSGCSNLMSFPEL---FYNIKELSLDGTAINELPSSI----EYLSKLVILNLGNSSRLE 167 (295)
Q Consensus 97 ~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~~~~----~~~~~L~~L~l~~~~~~~ 167 (295)
.++.++... .+++|+.|++++|.+....+.. +.+|++|++++|.++.+|..+ ..+++|+.|++++|. +.
T Consensus 99 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~ 176 (361)
T 2xot_A 99 -HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LK 176 (361)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CC
T ss_pred -cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CC
Confidence 456666543 4788888888888765443443 346778888888888777654 467888888888874 44
Q ss_pred Ccc-cccCCCCC--CCeeeccCCCCCC
Q 039126 168 GLP-SKICKLKS--LQHLNLSCCSNLE 191 (295)
Q Consensus 168 ~~p-~~l~~l~~--L~~L~l~~~~~~~ 191 (295)
.+| ..+..++. ++.|++++|++..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 554 44556665 4778888876653
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=3.1e-14 Score=116.34 Aligned_cols=149 Identities=15% Similarity=0.129 Sum_probs=95.1
Q ss_pred eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCc
Q 039126 19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCR 97 (295)
Q Consensus 19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 97 (295)
+.++++++.++.+|..+. ..|+.|++++|.+.+..+ .+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence 578888888888887554 678899999988765555 5888888888888886554444667788888888888874
Q ss_pred CCceeCCcc--cCccccEEeccCCCCCcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCC
Q 039126 98 SLTNLSTSI--HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICK 175 (295)
Q Consensus 98 ~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~ 175 (295)
.++.++... .+++|+.|++++|.+.+..| ..+..+++|+.|++++|......+..+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~--------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRV--------------------DAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCH--------------------HHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 455555543 36666666666654332222 23445555566666555322222334555
Q ss_pred CCCCCeeeccCCCCC
Q 039126 176 LKSLQHLNLSCCSNL 190 (295)
Q Consensus 176 l~~L~~L~l~~~~~~ 190 (295)
+++|++|++++|.+.
T Consensus 151 l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 151 LRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred CCCCCEEEeCCCCcC
Confidence 666666666665543
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=1e-14 Score=122.46 Aligned_cols=154 Identities=21% Similarity=0.208 Sum_probs=125.2
Q ss_pred CCCCcCCCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchh
Q 039126 4 CPFKSLSSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIR 83 (295)
Q Consensus 4 ~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (295)
..+++++....+++|+.|++++|.+..++ .++.+++|++|++++|.+.+. +.+..+++|++|++++| .++.++....
T Consensus 29 ~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~L~~N-~l~~l~~~~~ 105 (263)
T 1xeu_A 29 QSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRN-RLKNLNGIPS 105 (263)
T ss_dssp SCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSS-CCSCCTTCCC
T ss_pred CCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCC-hhhccCCCCCEEECCCC-ccCCcCcccc
Confidence 45666665557999999999999999988 789999999999999987554 44999999999999996 5555664333
Q ss_pred cccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCc--CCCCCceEEccCccccccchhhhCCCCCcEEecC
Q 039126 84 HLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPE--LFYNIKELSLDGTAINELPSSIEYLSKLVILNLG 161 (295)
Q Consensus 84 ~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~ 161 (295)
++|+.|++++| .++.++....+++|+.|++++|++. .++. .+.+|++|++++|.++.+ ..+..+++|+.|+++
T Consensus 106 --~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~-~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 106 --ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLT 180 (263)
T ss_dssp --SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSCCC-BCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEE
T ss_pred --CcccEEEccCC-ccCCChhhcCcccccEEECCCCcCC-CChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCC
Confidence 99999999995 5666665456999999999998754 4442 356899999999999988 668899999999999
Q ss_pred CCcC
Q 039126 162 NSSR 165 (295)
Q Consensus 162 ~~~~ 165 (295)
+|..
T Consensus 181 ~N~~ 184 (263)
T 1xeu_A 181 GQKC 184 (263)
T ss_dssp EEEE
T ss_pred CCcc
Confidence 9853
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=5.6e-14 Score=114.79 Aligned_cols=149 Identities=20% Similarity=0.207 Sum_probs=92.9
Q ss_pred eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccc-cchhcccCCcEEcccc
Q 039126 19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETH-SSIRHLNKFVARNLKH 95 (295)
Q Consensus 19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~ 95 (295)
+.++++++.++++|..+. ..+++|++++|.+.+..+ .+..+++|++|++++|. ++.++ ..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCC
Confidence 478888888888886553 346788888888765544 26778888888888754 44443 3567777777777776
Q ss_pred CcCCceeCCc-c-cCccccEEeccCCCCCcccCcCCCCCceEEccCcccccc-chhhhCCCCCcEEecCCCcCCcCcccc
Q 039126 96 CRSLTNLSTS-I-HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINEL-PSSIEYLSKLVILNLGNSSRLEGLPSK 172 (295)
Q Consensus 96 ~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~ 172 (295)
|. ++.++.. + .+++|++|++++|. ++.+ |..+..+++|+.|++++|......|..
T Consensus 91 N~-l~~~~~~~~~~l~~L~~L~Ls~N~---------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 91 NR-LENVQHKMFKGLESLKTLMLRSNR---------------------ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp SC-CCCCCGGGGTTCSSCCEEECTTSC---------------------CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred Cc-cCccCHhHhcCCcCCCEEECCCCc---------------------CCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 43 3433332 2 25555555555554 4433 334555666777777666433333566
Q ss_pred cCCCCCCCeeeccCCCCCCC
Q 039126 173 ICKLKSLQHLNLSCCSNLES 192 (295)
Q Consensus 173 l~~l~~L~~L~l~~~~~~~~ 192 (295)
+..+++|++|++++|.+...
T Consensus 149 ~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTTCTTCCEEECCSCCEECS
T ss_pred hcCCCCCCEEEecCcCCcCC
Confidence 66677777777777665543
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=1e-13 Score=113.17 Aligned_cols=117 Identities=18% Similarity=0.216 Sum_probs=92.8
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
+..++.+|... .++++.|++++|.+..++. .+..+++|++|++++|.+.+..| .+..+++|++|++++| .++.+|.
T Consensus 20 ~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 97 (220)
T 2v9t_B 20 GKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPK 97 (220)
T ss_dssp TSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred CCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCH
Confidence 45677777644 3789999999999998875 67999999999999999877667 6999999999999995 5566665
Q ss_pred c-hhcccCCcEEccccCcCCceeCC-cc-cCccccEEeccCCCCC
Q 039126 81 S-IRHLNKFVARNLKHCRSLTNLST-SI-HLESLKKLILSGCSNL 122 (295)
Q Consensus 81 ~-~~~l~~L~~L~l~~~~~l~~l~~-~~-~~~~L~~L~l~~~~~~ 122 (295)
. +..+++|++|++++|. ++.++. .+ .+++|+.|++++|.+.
T Consensus 98 ~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred hHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 4 7899999999999964 455443 33 3777888888777543
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=7.7e-14 Score=122.49 Aligned_cols=159 Identities=19% Similarity=0.227 Sum_probs=124.8
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccchh-hc-CCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLWKV-VQ-RLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH 79 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~-~~-~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 79 (295)
+..++.+|..+ .+.++.|+|++|.++.++.. +. .+++|++|++++|.+.+..+ .+..+++|++|++++|. ++.++
T Consensus 27 ~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~ 104 (361)
T 2xot_A 27 KQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLD 104 (361)
T ss_dssp SSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred CCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCC
Confidence 44567777533 45689999999999988754 45 89999999999999876665 59999999999999965 55555
Q ss_pred -cchhcccCCcEEccccCcCCceeC-Ccc-cCccccEEeccCCCCCcccCcC-------CCCCceEEccCccccccch-h
Q 039126 80 -SSIRHLNKFVARNLKHCRSLTNLS-TSI-HLESLKKLILSGCSNLMSFPEL-------FYNIKELSLDGTAINELPS-S 148 (295)
Q Consensus 80 -~~~~~l~~L~~L~l~~~~~l~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~-------~~~L~~L~l~~~~i~~~~~-~ 148 (295)
..+..+++|++|++++|. +..++ ..+ .+++|+.|++++|.+. .+|.. +.+|++|++++|.++.+|. .
T Consensus 105 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 182 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182 (361)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHH
T ss_pred HHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHH
Confidence 458899999999999965 55554 334 4899999999998644 45543 5688999999999998874 4
Q ss_pred hhCCCC--CcEEecCCCcC
Q 039126 149 IEYLSK--LVILNLGNSSR 165 (295)
Q Consensus 149 ~~~~~~--L~~L~l~~~~~ 165 (295)
+..++. ++.|++++|..
T Consensus 183 ~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HHHSCHHHHTTEECCSSCE
T ss_pred hhhccHhhcceEEecCCCc
Confidence 666766 48899998853
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.54 E-value=5.8e-15 Score=137.68 Aligned_cols=194 Identities=13% Similarity=0.097 Sum_probs=109.1
Q ss_pred CCCCceeEecCCCCccc-----cchhhcCCCCCcEEecCCCCCCC----cCC-CCCCCCCCcEeeccccccccccccchh
Q 039126 14 RPKNLVSPEIPRNSIKQ-----LWKVVQRLVNLKSINLNHSEHLT----EIP-SLSLATNLESLNFQRYTSLLETHSSIR 83 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~L~~~~~~~----~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (295)
.+++|++|+|++|.+.+ ++.....+++|++|++++|.+.+ .++ .+..+++|++|++++|. +..++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHh
Confidence 47888888888887653 33445678888888888887652 222 14567888888888854 344565666
Q ss_pred cccCCcEEccccCcCC--------------------------ceeCCcc-cCccccEEeccCCCCCccc----CcCCCCC
Q 039126 84 HLNKFVARNLKHCRSL--------------------------TNLSTSI-HLESLKKLILSGCSNLMSF----PELFYNI 132 (295)
Q Consensus 84 ~l~~L~~L~l~~~~~l--------------------------~~l~~~~-~~~~L~~L~l~~~~~~~~~----~~~~~~L 132 (295)
.+++|+.|+++.+... ..++... .+++|++|++++|...... ...+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 7777777776532111 1111111 2556777777766532221 1344566
Q ss_pred ceEEccCcccc--ccchhhhCCCCCcEEecCC----------CcCCcC--cccccCCCCCCCeeeccCCCCCCCchhhhh
Q 039126 133 KELSLDGTAIN--ELPSSIEYLSKLVILNLGN----------SSRLEG--LPSKICKLKSLQHLNLSCCSNLESFPNELR 198 (295)
Q Consensus 133 ~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~----------~~~~~~--~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 198 (295)
++|+++ +.+. .++..+..+++|++|++++ |..+.. ++.....+++|++|+++.+.+.+..+..+.
T Consensus 321 ~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 321 EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 666665 2222 3333345566677777763 333321 122233466666666655555554555444
Q ss_pred c-cCCCCcceeecc
Q 039126 199 N-LFPCDLYDIEAH 211 (295)
Q Consensus 199 ~-~~~~~L~~L~l~ 211 (295)
. + ++|++|+++
T Consensus 400 ~~~--~~L~~L~l~ 411 (592)
T 3ogk_B 400 TYL--KNLCDFRLV 411 (592)
T ss_dssp HHC--CSCCEEEEE
T ss_pred hhC--CCCcEEEEe
Confidence 3 3 566666665
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=2e-13 Score=111.42 Aligned_cols=119 Identities=16% Similarity=0.185 Sum_probs=90.8
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCccccc--hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQLW--KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETH 79 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 79 (295)
+..++++|..+ .+.++.|++++|.++.++ ..++.+++|++|++++|.+.+..+ .+..+++|++|++++|......+
T Consensus 20 ~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 20 NQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp SSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred CCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH
Confidence 34566777533 456799999999999884 347899999999999999876666 59999999999999975544445
Q ss_pred cchhcccCCcEEccccCcCCcee-CCcc-cCccccEEeccCCCCCc
Q 039126 80 SSIRHLNKFVARNLKHCRSLTNL-STSI-HLESLKKLILSGCSNLM 123 (295)
Q Consensus 80 ~~~~~l~~L~~L~l~~~~~l~~l-~~~~-~~~~L~~L~l~~~~~~~ 123 (295)
..+..+++|++|++++|. ++.+ +..+ .+++|+.|++++|++.+
T Consensus 99 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITT 143 (220)
T ss_dssp GGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCC
T ss_pred hHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCE
Confidence 568999999999999964 4444 4333 36777777777765443
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=3.1e-13 Score=111.00 Aligned_cols=116 Identities=23% Similarity=0.181 Sum_probs=90.1
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
+..+..+|... .++|+.|++++|.+..+ +..+..+++|++|++++|.+....+ .+..+++|++|++++| .+..++.
T Consensus 28 ~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 105 (229)
T 3e6j_A 28 SKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS 105 (229)
T ss_dssp TSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccCh
Confidence 34566677533 48999999999999987 5678999999999999999744333 3799999999999996 4555554
Q ss_pred -chhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCC
Q 039126 81 -SIRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSN 121 (295)
Q Consensus 81 -~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~ 121 (295)
.+..+++|++|++++| .++.+|..+ .+++|+.|++++|.+
T Consensus 106 ~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp TTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCC
T ss_pred hHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcC
Confidence 4789999999999985 456676555 367777777777653
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.50 E-value=6.9e-15 Score=137.17 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=16.0
Q ss_pred CCCceeEecCCCCcccc-chhhc-CCCCCcEEecCCC
Q 039126 15 PKNLVSPEIPRNSIKQL-WKVVQ-RLVNLKSINLNHS 49 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l-~~~~~-~l~~L~~L~L~~~ 49 (295)
+++|++|++++|.++.. +..+. .+++|++|++++|
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 45555555555544421 22221 3445555555544
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=9.4e-14 Score=108.38 Aligned_cols=134 Identities=18% Similarity=0.221 Sum_probs=89.5
Q ss_pred CCCCceeEecCCCCcc--ccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEE
Q 039126 14 RPKNLVSPEIPRNSIK--QLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVAR 91 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 91 (295)
..++|+.|++++|.+. .+|..+..+++|++|++++|.+.+. +.+..+++|++|++++|.....+|..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3577888888888887 6777777888888888888876544 667778888888888865444466556667777777
Q ss_pred ccccCcCCceeCC--cc-cCccccEEeccCCCCCcccCcCCCCCceEEccCccccccch----hhhCCCCCcEEecCCCc
Q 039126 92 NLKHCRSLTNLST--SI-HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPS----SIEYLSKLVILNLGNSS 164 (295)
Q Consensus 92 ~l~~~~~l~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~----~~~~~~~L~~L~l~~~~ 164 (295)
++++| .++.++. .+ .++ +|++|++++|.++.++. .+..+++|+.|++++|.
T Consensus 101 ~Ls~N-~l~~~~~~~~l~~l~---------------------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 101 NLSGN-KLKDISTLEPLKKLE---------------------CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ECBSS-SCCSSGGGGGGSSCS---------------------CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred eccCC-ccCcchhHHHHhcCC---------------------CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 77775 3344331 11 234 45555555555665554 56777888888888773
Q ss_pred CCcCccc
Q 039126 165 RLEGLPS 171 (295)
Q Consensus 165 ~~~~~p~ 171 (295)
...+|.
T Consensus 159 -~~~~~~ 164 (168)
T 2ell_A 159 -DQEAPD 164 (168)
T ss_dssp -SCBCCS
T ss_pred -hhhccc
Confidence 444443
No 118
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.48 E-value=1.1e-14 Score=135.78 Aligned_cols=214 Identities=12% Similarity=0.017 Sum_probs=137.4
Q ss_pred ccchhhcCCCCCcEEecCCCCCCCcCC-C-CCCCCCCcEeeccccccccccccchhcccCCcEEcccc--------CcCC
Q 039126 30 QLWKVVQRLVNLKSINLNHSEHLTEIP-S-LSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKH--------CRSL 99 (295)
Q Consensus 30 ~l~~~~~~l~~L~~L~L~~~~~~~~~~-~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~--------~~~l 99 (295)
.++..+..+++|++|++++|.+..... . +..+++|++|++++|-....++.....+++|+.|++.+ +..+
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 344444567888888888887443322 2 56788888888888622122333344678888888843 2333
Q ss_pred ceeCCc---ccCccccEEeccCCCCCcccC----cCCCCCceEEcc--C----cccccc------chhhhCCCCCcEEec
Q 039126 100 TNLSTS---IHLESLKKLILSGCSNLMSFP----ELFYNIKELSLD--G----TAINEL------PSSIEYLSKLVILNL 160 (295)
Q Consensus 100 ~~l~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~--~----~~i~~~------~~~~~~~~~L~~L~l 160 (295)
+..... ..+++|+.|.+..+......+ ..+++|++|+++ + +.++.. +..+..+++|+.|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 321111 127888988776665443222 245689999988 3 455533 233567889999999
Q ss_pred CCCcCCcCcccccCC-CCCCCeeeccCCCCCCCchhhh-hccCCCCcceeecccccccccccccchhhhccCCcccEEee
Q 039126 161 GNSSRLEGLPSKICK-LKSLQHLNLSCCSNLESFPNEL-RNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDF 238 (295)
Q Consensus 161 ~~~~~~~~~p~~l~~-l~~L~~L~l~~~~~~~~~~~~l-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 238 (295)
+++ .....+..+.. +++|++|++++|.+.+..+..+ ..+ ++|++|++++|.. +.... ..+...+++|++|++
T Consensus 440 ~~~-l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~--~~L~~L~L~~n~~-~~~~~--~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 440 SGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC--DSLRKLEIRDCPF-GDKAL--LANASKLETMRSLWM 513 (594)
T ss_dssp CSS-CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC--TTCCEEEEESCSC-CHHHH--HHTGGGGGGSSEEEE
T ss_pred cCc-ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC--CCcCEEECcCCCC-cHHHH--HHHHHhCCCCCEEee
Confidence 762 22223334444 8899999999998766666555 455 9999999999875 43332 223356899999999
Q ss_pred cCCCCChhhhHh
Q 039126 239 INCFKLHQNVVQ 250 (295)
Q Consensus 239 ~~c~~l~~~~~~ 250 (295)
++|+. +....+
T Consensus 514 ~~~~~-~~~~~~ 524 (594)
T 2p1m_B 514 SSCSV-SFGACK 524 (594)
T ss_dssp ESSCC-BHHHHH
T ss_pred eCCCC-CHHHHH
Confidence 99976 444333
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=1.3e-13 Score=131.51 Aligned_cols=187 Identities=16% Similarity=0.095 Sum_probs=75.7
Q ss_pred CCCceeEecCCCCccccchhhcCCCCCcEEecCC-----CCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCC
Q 039126 15 PKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNH-----SEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKF 88 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~-----~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (295)
.++++.|+|.++.+...+..+-...+|+.+.+.. |.+. ..+ .+..++.|++|+|++|. +..+|..+..+++|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCC
Confidence 4567788888887776665554444444444333 2221 223 36777778888887754 44666666677777
Q ss_pred cEEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCcCCC---CCceEEccCccccccchhhhCCCCCcEEecCCCc
Q 039126 89 VARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAINELPSSIEYLSKLVILNLGNSS 164 (295)
Q Consensus 89 ~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~ 164 (295)
++|++++| .++.+|..+ .+++|+.|+|++|.+. .+|..++ +|++|++++|.++.+|..++.+++|+.|++++|.
T Consensus 250 ~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 77777774 344666544 3667777777766543 5554433 4556666666666555555566666666666654
Q ss_pred CCcCcccccCCCCC-CCeeeccCCCCCCCchhhhhccCCCCcceeecccc
Q 039126 165 RLEGLPSKICKLKS-LQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWC 213 (295)
Q Consensus 165 ~~~~~p~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~ 213 (295)
..+.+|..+..+.. +..+++++|.+.+.+ |..|+.|+++.+
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~--------p~~l~~l~l~~n 369 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPL--------PHERRFIEINTD 369 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCC--------CCC---------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcC--------ccccceeEeecc
Confidence 44344443322211 112444554444333 345555666543
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=6.2e-13 Score=103.68 Aligned_cols=78 Identities=24% Similarity=0.266 Sum_probs=40.5
Q ss_pred eEEccCccccc-cchhhhCCCCCcEEecCCCcCCcCcc--cccCCCCCCCeeeccCCCCCCCch---hhhhccCCCCcce
Q 039126 134 ELSLDGTAINE-LPSSIEYLSKLVILNLGNSSRLEGLP--SKICKLKSLQHLNLSCCSNLESFP---NELRNLFPCDLYD 207 (295)
Q Consensus 134 ~L~l~~~~i~~-~~~~~~~~~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~~~L~~ 207 (295)
+|++++|.++. +|..+..+++|++|++++| .+..+| ..+..+++|++|++++|.+.+..+ ..+..+ ++|++
T Consensus 75 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~ 151 (168)
T 2ell_A 75 KLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL--PQLTY 151 (168)
T ss_dssp EEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC--SSCCE
T ss_pred EEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC--ccCcE
Confidence 33333333333 3444445566666666665 334433 455666666666666665443332 244444 66666
Q ss_pred eeccccc
Q 039126 208 IEAHWCS 214 (295)
Q Consensus 208 L~l~~~~ 214 (295)
|++++|.
T Consensus 152 L~l~~n~ 158 (168)
T 2ell_A 152 LDGYDRE 158 (168)
T ss_dssp ETTEETT
T ss_pred ecCCCCC
Confidence 6666653
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=5.2e-13 Score=101.97 Aligned_cols=124 Identities=16% Similarity=0.183 Sum_probs=84.2
Q ss_pred CCCceeEecCCCCcc--ccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126 15 PKNLVSPEIPRNSIK--QLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN 92 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 92 (295)
.++++.|++++|.+. .+|..++.+++|++|++++|.+.+. +.+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 577888888888887 6777778888888888888876544 6678888888888888655444666666777788888
Q ss_pred cccCcCCceeC--Ccc-cCccccEEeccCCCCCcccCcCCCCCceEEccCccccccch----hhhCCCCCcEEecC
Q 039126 93 LKHCRSLTNLS--TSI-HLESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPS----SIEYLSKLVILNLG 161 (295)
Q Consensus 93 l~~~~~l~~l~--~~~-~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~----~~~~~~~L~~L~l~ 161 (295)
+++|. ++.++ ..+ .+++|+ +|++++|.++.++. .++.+++|+.|+++
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~---------------------~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLK---------------------SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCC---------------------EEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCc-CCChHHHHHHhhCCCCC---------------------EEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77753 33332 111 244444 44555555555443 46677778877765
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=5.8e-14 Score=133.93 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=95.4
Q ss_pred cchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCccc-C
Q 039126 31 LWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIH-L 108 (295)
Q Consensus 31 l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~ 108 (295)
.+..+..+..|+.|+|++|.+. .+| .+..+++|++|+|++| .+..+|..+..+++|++|++++|. ++.+|..+. +
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 3566788888999999988865 565 5668888999999886 445888888888999999998854 557777664 8
Q ss_pred ccccEEeccCCCCCcccCcCCC---CCceEEccCcccc-ccchhhhCCC-CCcEEecCCCcCCcCcccccCCCCCCCeee
Q 039126 109 ESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAIN-ELPSSIEYLS-KLVILNLGNSSRLEGLPSKICKLKSLQHLN 183 (295)
Q Consensus 109 ~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~-~~~~~~~~~~-~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 183 (295)
++|++|+|++|. ++.+|..++ +|++|++++|.++ .+|..+.... ....+++.+|.....+|.. |+.|+
T Consensus 293 ~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~ 365 (727)
T 4b8c_D 293 FQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIE 365 (727)
T ss_dssp TTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------
T ss_pred CCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeE
Confidence 889999998885 457777654 5678889998888 4455554332 2233567777555555543 45555
Q ss_pred ccCC
Q 039126 184 LSCC 187 (295)
Q Consensus 184 l~~~ 187 (295)
++.|
T Consensus 366 l~~n 369 (727)
T 4b8c_D 366 INTD 369 (727)
T ss_dssp ----
T ss_pred eecc
Confidence 6655
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=1.5e-14 Score=134.16 Aligned_cols=171 Identities=14% Similarity=0.106 Sum_probs=132.4
Q ss_pred CCCCCCCcEeeccccccccccccchhcccCCcEEccccCc-------------CCceeCCcc-cCccccEEe-ccCCCC-
Q 039126 58 LSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCR-------------SLTNLSTSI-HLESLKKLI-LSGCSN- 121 (295)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~l~~l~~~~-~~~~L~~L~-l~~~~~- 121 (295)
+..+++|+.|++++ +.++.+|..++.+++|+.|+++++. .....|..+ .+++|+.|+ ++.+..
T Consensus 345 ~~~~~~L~~L~Ls~-n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSV-EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCH-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCCh-hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 46788999999999 4667899999999999999987643 122222222 266677776 333311
Q ss_pred -----------CcccCcCCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCC
Q 039126 122 -----------LMSFPELFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL 190 (295)
Q Consensus 122 -----------~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 190 (295)
+..++. ..|+.|++++|.++.+|. ++.+++|+.|++++| .+..+|..++++++|+.|++++|.+.
T Consensus 424 ~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEY--ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHHH--TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhhhhcccccccCc--cCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCC
Confidence 112222 258999999999999987 899999999999998 46689999999999999999998876
Q ss_pred CCchhhhhccCCCCcceeecccccccccc--cccchhhhccCCcccEEeecCCC
Q 039126 191 ESFPNELRNLFPCDLYDIEAHWCSSLETL--SGLSIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 191 ~~~~~~l~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~L~~L~l~~c~ 242 (295)
+ +| .+..+ ++|+.|+++++ .++.+ |..+ ..+++|+.|++++++
T Consensus 500 ~-lp-~l~~l--~~L~~L~Ls~N-~l~~~~~p~~l----~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 500 N-VD-GVANL--PRLQELLLCNN-RLQQSAAIQPL----VSCPRLVLLNLQGNS 544 (567)
T ss_dssp C-CG-GGTTC--SSCCEEECCSS-CCCSSSTTGGG----GGCTTCCEEECTTSG
T ss_pred C-Cc-ccCCC--CCCcEEECCCC-CCCCCCCcHHH----hcCCCCCEEEecCCc
Confidence 5 77 78887 99999999986 46766 4433 689999999999985
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=3.4e-12 Score=101.81 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=88.6
Q ss_pred eeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCC--CCCCCCCcEeeccccccccccccchhcccCCcEEccccC
Q 039126 19 VSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPS--LSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHC 96 (295)
Q Consensus 19 ~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 96 (295)
++++++++.++++|..+.. .|+.|++++|.+.+..+. +..+++|++|++++|......|..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6788888888888765543 788888888876555543 778888888888886554445667888888888888885
Q ss_pred cCCceeCCc-c-cCccccEEeccCCCCCcccCcCCC---CCceEEccCcccc
Q 039126 97 RSLTNLSTS-I-HLESLKKLILSGCSNLMSFPELFY---NIKELSLDGTAIN 143 (295)
Q Consensus 97 ~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~ 143 (295)
.++.++.. + .+++|+.|++++|++.+..|..+. +|++|++++|.+.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 44555443 3 478888888888876666565443 6778888888876
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=3.2e-12 Score=101.98 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=57.9
Q ss_pred CCCcCCCCCCCCCceeEecCCCCccccchh--hcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc
Q 039126 5 PFKSLSSIIRPKNLVSPEIPRNSIKQLWKV--VQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS 81 (295)
Q Consensus 5 ~~~~~p~~~~~~~L~~L~l~~~~~~~l~~~--~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (295)
.++++|... ..+++.|++++|.+..++.. ++.+++|++|++++|.+.+..| .+..+++|++|++++|......+..
T Consensus 19 ~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 19 GLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp CCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred CcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH
Confidence 344444422 22555666666655555432 4555566666666665554444 3555556666666554333333333
Q ss_pred hhcccCCcEEccccCcCCceeCCcc-cCccccEEeccCCCC
Q 039126 82 IRHLNKFVARNLKHCRSLTNLSTSI-HLESLKKLILSGCSN 121 (295)
Q Consensus 82 ~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~ 121 (295)
+..+++|++|++++|..-...|..+ .+++|+.|++++|.+
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 5555566666665543222223322 255556666655543
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=2e-12 Score=101.69 Aligned_cols=85 Identities=11% Similarity=0.097 Sum_probs=54.5
Q ss_pred CCCCCCCCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccc-hhcccCC
Q 039126 10 SSIIRPKNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSS-IRHLNKF 88 (295)
Q Consensus 10 p~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L 88 (295)
+....+.+|+.|++++|.+..++......++|++|++++|.+.+ ++.+..+++|++|++++| .+..+|.. +..+++|
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-ccccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 34446778888888888877775422333478888888887654 366777777777777774 34444433 3566666
Q ss_pred cEEccccC
Q 039126 89 VARNLKHC 96 (295)
Q Consensus 89 ~~L~l~~~ 96 (295)
++|++++|
T Consensus 91 ~~L~L~~N 98 (176)
T 1a9n_A 91 TELILTNN 98 (176)
T ss_dssp CEEECCSC
T ss_pred CEEECCCC
Confidence 66666653
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=5.5e-12 Score=100.76 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=35.4
Q ss_pred CCceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccc
Q 039126 16 KNLVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLK 94 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 94 (295)
++++.|++++|.++.+|..+..+++|++|++++|.+.+..+ .|..+++|++|++++|......+..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 34445555555444444444445555555555544433322 24444445555554432222222234444444444444
Q ss_pred c
Q 039126 95 H 95 (295)
Q Consensus 95 ~ 95 (295)
+
T Consensus 111 ~ 111 (193)
T 2wfh_A 111 G 111 (193)
T ss_dssp S
T ss_pred C
Confidence 4
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=1.2e-12 Score=99.89 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=34.6
Q ss_pred cchhhhCCCCCcEEecCCCcCCcCcc--cccCCCCCCCeeeccCCCCCCCch---hhhhccCCCCcceeecc
Q 039126 145 LPSSIEYLSKLVILNLGNSSRLEGLP--SKICKLKSLQHLNLSCCSNLESFP---NELRNLFPCDLYDIEAH 211 (295)
Q Consensus 145 ~~~~~~~~~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~~~L~~L~l~ 211 (295)
+|..++.+++|+.|++++|. +..+| ..+..+++|++|++++|.+.+..+ ..+..+ ++|++|+++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~L~l~ 148 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL--PQLTYLDGY 148 (149)
T ss_dssp THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC--TTCCEETTB
T ss_pred HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC--CCcccccCC
Confidence 34444455566666666653 33332 455666666666666665544333 345555 666666654
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=7e-12 Score=98.51 Aligned_cols=60 Identities=20% Similarity=0.131 Sum_probs=30.3
Q ss_pred hCCCCCcEEecCCCcCCcCccc--ccCCCCCCCeeeccCCCCCCCchhh----hhccCCCCcceeecccc
Q 039126 150 EYLSKLVILNLGNSSRLEGLPS--KICKLKSLQHLNLSCCSNLESFPNE----LRNLFPCDLYDIEAHWC 213 (295)
Q Consensus 150 ~~~~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~~~----l~~~~~~~L~~L~l~~~ 213 (295)
+.+++|+.|++++| .++.+|. .+..+++|+.|++++|.+. .+|.. +..+ ++|+.|+++++
T Consensus 85 ~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l--~~L~~Ld~~~n 150 (176)
T 1a9n_A 85 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKV--PQVRVLDFQKV 150 (176)
T ss_dssp HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHC--TTCSEETTEEC
T ss_pred hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHC--CccceeCCCcC
Confidence 44555555555555 2344443 4555555555555555443 23332 4444 56666666554
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=2e-11 Score=105.60 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=60.9
Q ss_pred CCCCceEEccCccccccchh-hhCCCCCcEEecCCCcCCcCcc-cccCCCCCCC-eeeccCCCCCCCchhhhhccCCCCc
Q 039126 129 FYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQ-HLNLSCCSNLESFPNELRNLFPCDL 205 (295)
Q Consensus 129 ~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~-~L~l~~~~~~~~~~~~l~~~~~~~L 205 (295)
..+|+.+++.+|.++.++.. |..+++|+.+++..+ +..++ .++.+|++|+ .+++.. ......+..+..+ ++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c--~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC--DNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTC--TTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCC--ccC
Confidence 45677777777777766653 566777777777765 44443 4567777777 777776 3333333455555 777
Q ss_pred ceeecccccccccccccchhhhccCCcccEEe
Q 039126 206 YDIEAHWCSSLETLSGLSIIFTKISRNTQSFD 237 (295)
Q Consensus 206 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 237 (295)
+.+++++ +.++.++...+ ..+++|+.++
T Consensus 300 ~~l~l~~-n~i~~I~~~aF---~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATG-DKITTLGDELF---GNGVPSKLIY 327 (329)
T ss_dssp EEEEECS-SCCCEECTTTT---CTTCCCCEEE
T ss_pred CEEEeCC-CccCccchhhh---cCCcchhhhc
Confidence 7777755 34566655322 3556666554
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=3.7e-11 Score=95.87 Aligned_cols=126 Identities=16% Similarity=0.124 Sum_probs=88.6
Q ss_pred cEEeccCCCCCcccCcCC-CCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCC
Q 039126 112 KKLILSGCSNLMSFPELF-YNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNL 190 (295)
Q Consensus 112 ~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~ 190 (295)
+.++++++. +.++|..+ .++++|++++|.++.+|..+..+++|+.|++++|......+..+.++++|++|++++|.+.
T Consensus 13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 345666553 44555533 3677888888888888877888888888888887544444456788888888888888777
Q ss_pred CCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126 191 ESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL 244 (295)
Q Consensus 191 ~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 244 (295)
+..+..+..+ ++|++|+++++ .++.++.... ..+++|+.|++++++--
T Consensus 92 ~i~~~~f~~l--~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 92 CIPPRTFDGL--KSLRLLSLHGN-DISVVPEGAF---NDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTC--TTCCEEECCSS-CCCBCCTTTT---TTCTTCCEEECCSSCEE
T ss_pred EeCHHHhCCC--CCCCEEECCCC-CCCeeChhhh---hcCccccEEEeCCCCee
Confidence 6666677777 88888888875 4666665321 46778888888876543
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=4.3e-11 Score=94.00 Aligned_cols=122 Identities=14% Similarity=0.149 Sum_probs=73.1
Q ss_pred ceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc-chhcccCCcEEcccc
Q 039126 18 LVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARNLKH 95 (295)
Q Consensus 18 L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~ 95 (295)
.+.+++++++++.+|..+ .++|+.|++++|.+.+..+ .+..+++|++|++++| .+..++. .+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 356666667666666433 2567777777776543333 2566777777777764 3344443 356677777777776
Q ss_pred CcCCceeCCcc--cCccccEEeccCCCCCcccCcC----CCCCceEEccCccccc
Q 039126 96 CRSLTNLSTSI--HLESLKKLILSGCSNLMSFPEL----FYNIKELSLDGTAINE 144 (295)
Q Consensus 96 ~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l~~~~i~~ 144 (295)
| .++.++... .+++|+.|++++|.+. .+|.. +.+|++|++++|.+..
T Consensus 86 N-~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 N-KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred C-CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec
Confidence 4 344444432 3677777777776543 34432 3456777777777663
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=4.7e-10 Score=87.97 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=69.3
Q ss_pred cEEeccCCCCCcccCcC-CCCCceEEccCccccccchh-hhCCCCCcEEecCCCcCCcCcc-cccCCCCCCCeeeccCCC
Q 039126 112 KKLILSGCSNLMSFPEL-FYNIKELSLDGTAINELPSS-IEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQHLNLSCCS 188 (295)
Q Consensus 112 ~~L~l~~~~~~~~~~~~-~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~ 188 (295)
+.++++++. +..+|.. ..++++|++++|.++.++.. ++.+++|++|++++|. +..+| ..+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCC
Confidence 344444443 2333332 23556666666666655443 4566667777777663 33443 335666777777777766
Q ss_pred CCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCCCCC
Q 039126 189 NLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINCFKL 244 (295)
Q Consensus 189 ~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 244 (295)
+.+..+..+..+ ++|++|+++++ .++.++... ...+++|++|++++++--
T Consensus 88 l~~~~~~~~~~l--~~L~~L~l~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKL--TQLKELALDTN-QLKSVPDGI---FDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTC--TTCCEEECCSS-CCSCCCTTT---TTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCC--cccCEEECcCC-cceEeCHHH---hcCCcccCEEEecCCCee
Confidence 554444444555 67777777664 355555422 135667777777776543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=1.3e-12 Score=104.84 Aligned_cols=132 Identities=19% Similarity=0.190 Sum_probs=71.0
Q ss_pred ccccchhhcCCCCCcEEecCCCCCCCcCCCCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCccc
Q 039126 28 IKQLWKVVQRLVNLKSINLNHSEHLTEIPSLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSIH 107 (295)
Q Consensus 28 ~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 107 (295)
++.+|..++.+++|++|++++|.+.+ +|.+..+++|++|++++| .++.+|..+..+++|++|++++| .++.++....
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~~ 113 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLSGIEK 113 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHHHHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCCcccc
Confidence 33444456666666666666665433 445555566666666654 33345544455555555555553 2333332112
Q ss_pred CccccEEeccCCCCCcccCcCCCCCceEEccCccccccch--hhhCCCCCcEEecCCCcCCcCccc----------ccCC
Q 039126 108 LESLKKLILSGCSNLMSFPELFYNIKELSLDGTAINELPS--SIEYLSKLVILNLGNSSRLEGLPS----------KICK 175 (295)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~--~~~~~~~L~~L~l~~~~~~~~~p~----------~l~~ 175 (295)
+++ |++|++++|.++.++. .+..+++|++|++++|......|. .+..
T Consensus 114 l~~---------------------L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 114 LVN---------------------LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp HHH---------------------SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCC---------------------CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 344 4555555555554443 566677777777777743333332 2566
Q ss_pred CCCCCeee
Q 039126 176 LKSLQHLN 183 (295)
Q Consensus 176 l~~L~~L~ 183 (295)
+++|+.|+
T Consensus 173 l~~L~~Ld 180 (198)
T 1ds9_A 173 LPNLKKLD 180 (198)
T ss_dssp CSSCSEEC
T ss_pred CCCcEEEC
Confidence 77777776
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=9.7e-13 Score=105.52 Aligned_cols=110 Identities=21% Similarity=0.253 Sum_probs=61.0
Q ss_pred chhcccCCcEEccccCcCCceeCCcccCccccEEeccCCCCCcccCcCC---CCCceEEccCccccccchhhhCCCCCcE
Q 039126 81 SIRHLNKFVARNLKHCRSLTNLSTSIHLESLKKLILSGCSNLMSFPELF---YNIKELSLDGTAINELPSSIEYLSKLVI 157 (295)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~i~~~~~~~~~~~~L~~ 157 (295)
.+..+++|++|++++| .++.+|....+++|+.|++++|.+ ..+|..+ ++|++|++++|.++.+| .++.+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCCCHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCC-CCccccccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 4445555555555543 233344111245555555555432 2333322 24556666666666655 4667778888
Q ss_pred EecCCCcCCcCccc--ccCCCCCCCeeeccCCCCCCCch
Q 039126 158 LNLGNSSRLEGLPS--KICKLKSLQHLNLSCCSNLESFP 194 (295)
Q Consensus 158 L~l~~~~~~~~~p~--~l~~l~~L~~L~l~~~~~~~~~~ 194 (295)
|++++|. +..++. .+..+++|++|++++|.+.+..|
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 8888773 444432 56777888888888776554433
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=5.2e-10 Score=87.29 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=75.2
Q ss_pred ceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-hhcccCCcEEcccc
Q 039126 18 LVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS-IRHLNKFVARNLKH 95 (295)
Q Consensus 18 L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~ 95 (295)
.+.++++++.++.+|..+. +.|++|++++|.+.+..| .+..+++|++|++++| .+..++.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 5788999999998887653 789999999998776666 4888999999999985 45555544 67888888888888
Q ss_pred CcCCceeCCc-c-cCccccEEeccCCCC
Q 039126 96 CRSLTNLSTS-I-HLESLKKLILSGCSN 121 (295)
Q Consensus 96 ~~~l~~l~~~-~-~~~~L~~L~l~~~~~ 121 (295)
| .++.++.. + .+++|+.|++++|.+
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 4 45555553 2 367777777777653
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=8.7e-10 Score=86.01 Aligned_cols=94 Identities=19% Similarity=0.198 Sum_probs=77.8
Q ss_pred CCCCCcCCCCCCCCCceeEecCCCCcccc-chhhcCCCCCcEEecCCCCCCCcCCC-CCCCCCCcEeecccccccccccc
Q 039126 3 GCPFKSLSSIIRPKNLVSPEIPRNSIKQL-WKVVQRLVNLKSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHS 80 (295)
Q Consensus 3 ~~~~~~~p~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~ 80 (295)
+..++++|... .++++.|++++|.++.+ +..+.++++|++|++++|.+.+..+. +..+++|++|++++| .+..++.
T Consensus 18 ~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~ 95 (170)
T 3g39_A 18 GKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPR 95 (170)
T ss_dssp TSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCH
Confidence 45677788644 58999999999999988 56689999999999999997655553 789999999999996 5556665
Q ss_pred -chhcccCCcEEccccCcC
Q 039126 81 -SIRHLNKFVARNLKHCRS 98 (295)
Q Consensus 81 -~~~~l~~L~~L~l~~~~~ 98 (295)
.+..+++|++|++++|..
T Consensus 96 ~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 96 GAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTTTTCTTCCEEECCSSCB
T ss_pred HHhcCCCCCCEEEeCCCCC
Confidence 588999999999999753
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=1.1e-09 Score=85.80 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=82.0
Q ss_pred ceeEecCCCCccccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc-hhcccCCcEEcccc
Q 039126 18 LVSPEIPRNSIKQLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS-IRHLNKFVARNLKH 95 (295)
Q Consensus 18 L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~ 95 (295)
-+.++++++.++.+|..+. +.|++|++++|.+.+..| .+..+++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 3688999999999987664 889999999999876666 5899999999999995 56667655 68899999999998
Q ss_pred CcCCceeCCc-c-cCccccEEeccCCCCC
Q 039126 96 CRSLTNLSTS-I-HLESLKKLILSGCSNL 122 (295)
Q Consensus 96 ~~~l~~l~~~-~-~~~~L~~L~l~~~~~~ 122 (295)
| .++.++.. + .+++|+.|++++|.+.
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 5 56677765 3 4899999999998643
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=9.1e-10 Score=86.26 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=48.6
Q ss_pred cEEecCCCCCCCcCCC-CCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCceeCCcc--cCccccEEeccC
Q 039126 42 KSINLNHSEHLTEIPS-LSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSG 118 (295)
Q Consensus 42 ~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~ 118 (295)
+.++++++.+ +.+|. +. ++|++|++++|......|..+..+++|++|++++| .++.++... .+++|+.|++++
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 4555555543 34442 22 55566666654332223444555666666666653 444444432 255666666665
Q ss_pred CCCCcccCcC----CCCCceEEccCcccccc
Q 039126 119 CSNLMSFPEL----FYNIKELSLDGTAINEL 145 (295)
Q Consensus 119 ~~~~~~~~~~----~~~L~~L~l~~~~i~~~ 145 (295)
|++. .+|.. +.+|++|++++|.+...
T Consensus 91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred Cccc-eeCHHHhccccCCCEEEeCCCCcccc
Confidence 5432 33322 23455566666655533
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=7.4e-08 Score=85.42 Aligned_cols=207 Identities=10% Similarity=0.087 Sum_probs=137.2
Q ss_pred CCceeEecCCCCccccch-hhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeeccccccccccccchhcccCCcEEc
Q 039126 16 KNLVSPEIPRNSIKQLWK-VVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARN 92 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 92 (295)
.+|+.++++.+ ++.++. .+.++ +|+.+.+..+ + ..++ .|..|++|+.++++. +.+..++.......+|+.+.
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~-l-~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST-L-EQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVL 209 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT-C-CEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEE
T ss_pred CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC-c-cEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEE
Confidence 36888888765 666653 34554 6888888763 2 3343 588889999999987 46666765544467888888
Q ss_pred cccCcCCceeCCcc--cCccccEEeccCCCCCcccCcC-C--CCCceEEccCccccccc-hhhhCCCCCcEEecCCCcCC
Q 039126 93 LKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFPEL-F--YNIKELSLDGTAINELP-SSIEYLSKLVILNLGNSSRL 166 (295)
Q Consensus 93 l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~-~--~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~ 166 (295)
+.. .++.++... ++++|+.+.+..+ +..++.. + .+|+.+.+ .+.++.++ ..|..+++|+.+.+.++...
T Consensus 210 lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 210 LPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred eCC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 874 366766655 3788999988764 3333322 1 36778877 44566664 45678889999998775322
Q ss_pred ----cCc-ccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecCC
Q 039126 167 ----EGL-PSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFINC 241 (295)
Q Consensus 167 ----~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 241 (295)
..+ +.++.+|++|+.+.+.. ....-....+..+ ++|+.+.+.+ +++.+....+ ..+ +|+.+.+.+.
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c--~~L~~l~lp~--~l~~I~~~aF---~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN--RKVTQLTIPA--NVTQINFSAF---NNT-GIKEVKVEGT 355 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC--CSCCEEEECT--TCCEECTTSS---SSS-CCCEEEECCS
T ss_pred CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC--CCccEEEECc--cccEEcHHhC---CCC-CCCEEEEcCC
Confidence 123 35688899999999885 3333233345555 8899998854 3666665322 456 8888888764
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=1.1e-08 Score=88.32 Aligned_cols=188 Identities=10% Similarity=0.014 Sum_probs=117.3
Q ss_pred CCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccc---cccccc-cchhcccCC
Q 039126 15 PKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYT---SLLETH-SSIRHLNKF 88 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~---~~~~~~-~~~~~l~~L 88 (295)
+++|+.+++++ .++.++ ..+.+|++|+.|++..|.+....+ .|..+.++.++...... ....+. ..+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888888 788776 456888889999988887653333 47777777777654411 011111 112222222
Q ss_pred c--------------------------EEccccCcCCceeCCcc-cCccccEEeccCCCCCcccCcC----CCCCceEEc
Q 039126 89 V--------------------------ARNLKHCRSLTNLSTSI-HLESLKKLILSGCSNLMSFPEL----FYNIKELSL 137 (295)
Q Consensus 89 ~--------------------------~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l 137 (295)
+ .+.+.+.-......... .+++|+.+++++|+ +..++.. +.+|+.+++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEEC
Confidence 2 22222210000000000 26789999999875 4455542 447889999
Q ss_pred cCccccccch-hhhCCCCCc-EEecCCCcCCcCc-ccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceee
Q 039126 138 DGTAINELPS-SIEYLSKLV-ILNLGNSSRLEGL-PSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIE 209 (295)
Q Consensus 138 ~~~~i~~~~~-~~~~~~~L~-~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~ 209 (295)
.++ ++.++. .|..+++|+ .+++.. .+..+ +.++.+|++|+.++++.+.+..-.+..+..+ ++|+.+.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~--~~L~~ly 327 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG--VPSKLIY 327 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT--CCCCEEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC--cchhhhc
Confidence 887 777755 467889999 999987 45555 4678899999999998876554444455555 7777765
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=4.3e-10 Score=98.85 Aligned_cols=59 Identities=15% Similarity=0.045 Sum_probs=30.0
Q ss_pred CCCCcEEecCCCCCCCcCC-C----C-CCCCCCcEeeccccccccccc-cchhcccCCcEEccccC
Q 039126 38 LVNLKSINLNHSEHLTEIP-S----L-SLATNLESLNFQRYTSLLETH-SSIRHLNKFVARNLKHC 96 (295)
Q Consensus 38 l~~L~~L~L~~~~~~~~~~-~----~-~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 96 (295)
+..|+.|++++|.+..... . + ...++|++|++++|....... .....+++|+.|++++|
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 3556777777776533221 1 1 123567777776654322211 12334556666666664
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.87 E-value=1.7e-10 Score=101.47 Aligned_cols=151 Identities=15% Similarity=0.085 Sum_probs=72.5
Q ss_pred CCCcEeeccccccccccccchhc-----ccCCcEEccccCcCCceeCCcc--cCccccEEeccCCCCCcccC--------
Q 039126 62 TNLESLNFQRYTSLLETHSSIRH-----LNKFVARNLKHCRSLTNLSTSI--HLESLKKLILSGCSNLMSFP-------- 126 (295)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~-------- 126 (295)
+.|++|++++|.........+.. ..+|+.|++++|..-..-...+ .+++|+.|++++|.+...-.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45666666665432222112211 2466666666653211111111 14556666666665432111
Q ss_pred cCCCCCceEEccCccccc-----cchhhhCCCCCcEEecCCCcCCc----CcccccCCCCCCCeeeccCCCCCCC----c
Q 039126 127 ELFYNIKELSLDGTAINE-----LPSSIEYLSKLVILNLGNSSRLE----GLPSKICKLKSLQHLNLSCCSNLES----F 193 (295)
Q Consensus 127 ~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~----~ 193 (295)
....+|++|++++|.++. ++..+...++|++|++++|.... .++..+..++.|++|++++|.+.+. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 122456666666666642 33334555666666666664211 1233445556666666666655432 2
Q ss_pred hhhhhccCCCCcceeeccccc
Q 039126 194 PNELRNLFPCDLYDIEAHWCS 214 (295)
Q Consensus 194 ~~~l~~~~~~~L~~L~l~~~~ 214 (295)
...+... ++|++|++++|.
T Consensus 232 ~~~L~~~--~~L~~L~Ls~N~ 250 (372)
T 3un9_A 232 ARAAREH--PSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHC--SSCCEEECTTSS
T ss_pred HHHHHhC--CCCCEEeccCCC
Confidence 2233333 566666666653
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=1.8e-08 Score=87.55 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=48.2
Q ss_pred EecCCC-CccccchhhcCCCCCcEEecCC-CCCCCcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCc
Q 039126 21 PEIPRN-SIKQLWKVVQRLVNLKSINLNH-SEHLTEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCR 97 (295)
Q Consensus 21 L~l~~~-~~~~l~~~~~~l~~L~~L~L~~-~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 97 (295)
++.+++ .++.+|. +..+++|+.|+|++ |.+.+..+ .|..+++|++|+|++|......|..+..+++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N- 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN- 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-
Confidence 455554 5555555 55555566666654 54433332 3555555666666554322222334555555555555553
Q ss_pred CCceeCCccc-CccccEEeccCCC
Q 039126 98 SLTNLSTSIH-LESLKKLILSGCS 120 (295)
Q Consensus 98 ~l~~l~~~~~-~~~L~~L~l~~~~ 120 (295)
.++.+|.... ...|+.|++.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 3344443321 2225555555554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.6e-08 Score=87.87 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=76.6
Q ss_pred CCCcCCCCCCCCCceeEecCC-CCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccccccccccc
Q 039126 5 PFKSLSSIIRPKNLVSPEIPR-NSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHSS 81 (295)
Q Consensus 5 ~~~~~p~~~~~~~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (295)
.+..+|.+..+++|+.|+|++ |.+..++ ..++++++|++|+|++|.+.+..| .|..+++|++|+|++| .+..+|..
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK 98 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHH
Confidence 577899944689999999996 9999887 568999999999999999877777 4899999999999995 55667655
Q ss_pred -hhcccCCcEEccccCcC
Q 039126 82 -IRHLNKFVARNLKHCRS 98 (295)
Q Consensus 82 -~~~l~~L~~L~l~~~~~ 98 (295)
+..+. |+.|++.+|..
T Consensus 99 ~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp TTCSCC-CCEEECCSSCC
T ss_pred HcccCC-ceEEEeeCCCc
Confidence 44454 99999998653
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=2.9e-07 Score=81.58 Aligned_cols=208 Identities=10% Similarity=0.131 Sum_probs=135.1
Q ss_pred CCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeecccccccccccc-chhcccCCcEEc
Q 039126 16 KNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYTSLLETHS-SIRHLNKFVARN 92 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~ 92 (295)
.+|+.+.++. .+..++ ..+.+|.+|+.+++..|.+..-.. .|. +.+|+.+.+.. .++.++. .+.++++|+.++
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEE
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEe
Confidence 4688888875 577665 557889999999998886543333 355 67888888875 3666654 477888899888
Q ss_pred cccCcCCceeCCccc-CccccEEeccCCCCCcccCc----CCCCCceEEccCcccc-----ccc-hhhhCCCCCcEEecC
Q 039126 93 LKHCRSLTNLSTSIH-LESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAIN-----ELP-SSIEYLSKLVILNLG 161 (295)
Q Consensus 93 l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~-----~~~-~~~~~~~~L~~L~l~ 161 (295)
+.. .++.++...+ -.+|+.+.+..+ +..++. .+.+|+.+.+.++.+. .++ ..|..+++|+.+.+.
T Consensus 233 l~~--~l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 233 IPE--NVSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp CCT--TCCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred cCC--CccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 875 3566665442 467888888553 334432 3447788888776554 343 356778889999888
Q ss_pred CCcCCcCcc-cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeecC
Q 039126 162 NSSRLEGLP-SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFIN 240 (295)
Q Consensus 162 ~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 240 (295)
. .+..++ .++.+|.+|+.+.+..+ ...+....... .+|+.+.+.+. ....+.... +.+...+++.+.+-.
T Consensus 309 ~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~--~~L~~l~l~~n-~~~~l~~~~--F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 309 E--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNN--TGIKEVKVEGT-TPPQVFEKV--WYGFPDDITVIRVPA 379 (401)
T ss_dssp T--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSS--SCCCEEEECCS-SCCBCCCSS--CCCSCTTCCEEEECG
T ss_pred C--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCC--CCCCEEEEcCC-CCccccccc--ccCCCCCccEEEeCH
Confidence 4 355554 56778899999988664 34444433332 38888888875 344444321 112224667776654
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.59 E-value=3.8e-08 Score=76.47 Aligned_cols=92 Identities=12% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCcEEecCCCcCCcCcccccCCCCCCCeeeccCCC-CCCCchhhhhcc--CCCCcceeecccccccccccccchhhhccC
Q 039126 154 KLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCS-NLESFPNELRNL--FPCDLYDIEAHWCSSLETLSGLSIIFTKIS 230 (295)
Q Consensus 154 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 230 (295)
.|++|++++|......-..+.++++|++|++++|. +.+.....+..+ .+++|++|++++|.++++..... + ..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~--L-~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA--L-HHF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH--G-GGC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH--H-hcC
Confidence 68888888886333333456788999999999986 444455555542 12579999999999888865422 2 468
Q ss_pred CcccEEeecCCCCChhhh
Q 039126 231 RNTQSFDFINCFKLHQNV 248 (295)
Q Consensus 231 ~~L~~L~l~~c~~l~~~~ 248 (295)
++|++|++++|+.+++..
T Consensus 139 ~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp TTCCEEEEESCTTCCCHH
T ss_pred CCCCEEECCCCCCCCchH
Confidence 999999999999998863
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.57 E-value=6.7e-08 Score=84.39 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=83.4
Q ss_pred CccccEEeccCCCCCcccCc-CCCCCceEEccCcccc-ccchhhh--CCCCCcEEecCCCcC-------CcCccccc--C
Q 039126 108 LESLKKLILSGCSNLMSFPE-LFYNIKELSLDGTAIN-ELPSSIE--YLSKLVILNLGNSSR-------LEGLPSKI--C 174 (295)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~-~~~~L~~L~l~~~~i~-~~~~~~~--~~~~L~~L~l~~~~~-------~~~~p~~l--~ 174 (295)
+++|+.|.+++|... .++. ...+|++|++..+.+. .....+. .+++|++|+++.+.. +..+...+ .
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCCCcEEEEeCCCCc-eeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 567777777665211 2221 2457888888877765 2222333 678999998853211 11121222 3
Q ss_pred CCCCCCeeeccCCCCCCCchhhhhc---cCCCCcceeeccccccccccccc-chhhhccCCcccEEeecCCCCChhhhHh
Q 039126 175 KLKSLQHLNLSCCSNLESFPNELRN---LFPCDLYDIEAHWCSSLETLSGL-SIIFTKISRNTQSFDFINCFKLHQNVVQ 250 (295)
Q Consensus 175 ~l~~L~~L~l~~~~~~~~~~~~l~~---~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 250 (295)
.+++|++|++.+|.+.+..+..+.. + ++|++|+++.+ .+++.... .......+++|+.|++++|. +.+...+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~--~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~ 325 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDIL--PQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKK 325 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSG--GGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccC--CCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHH
Confidence 5889999999998876555444442 3 89999999864 46653211 11111467899999999884 6655433
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=3.6e-08 Score=76.59 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=72.8
Q ss_pred CCceEEccCcccc-ccchhhhCCCCCcEEecCCCcCCcCcc-cccCCC----CCCCeeeccCCC-CCCCchhhhhccCCC
Q 039126 131 NIKELSLDGTAIN-ELPSSIEYLSKLVILNLGNSSRLEGLP-SKICKL----KSLQHLNLSCCS-NLESFPNELRNLFPC 203 (295)
Q Consensus 131 ~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~l----~~L~~L~l~~~~-~~~~~~~~l~~~~~~ 203 (295)
.|++|++++|.++ .--..+..+++|++|++++|..++... ..+..+ ++|++|++++|. +++.....+..+ +
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~--~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF--R 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC--T
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC--C
Confidence 4667777777766 223346789999999999998775422 335443 579999999996 555666777776 9
Q ss_pred CcceeecccccccccccccchhhhccCCcccE
Q 039126 204 DLYDIEAHWCSSLETLSGLSIIFTKISRNTQS 235 (295)
Q Consensus 204 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~ 235 (295)
+|++|++++|+.+++.......+...+|+++.
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 99999999999988855333333445666543
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=2.1e-07 Score=81.20 Aligned_cols=176 Identities=14% Similarity=0.166 Sum_probs=95.2
Q ss_pred chhhcCCCCCcEEecCCCCCC---------CcCC-CCCCCCCCcEeeccccccccccccchhcccCCcEEccccCcCCce
Q 039126 32 WKVVQRLVNLKSINLNHSEHL---------TEIP-SLSLATNLESLNFQRYTSLLETHSSIRHLNKFVARNLKHCRSLTN 101 (295)
Q Consensus 32 ~~~~~~l~~L~~L~L~~~~~~---------~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 101 (295)
..++.++++|+.|.+...... +.+. -+..+++|+.|++++|... .++. + .+++|+.|++..|..-..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChH
Confidence 344556667777766554221 0111 1345667777777665322 2222 2 266777777765432111
Q ss_pred eCCcc---cCccccEEeccCC--CCCcc--------c-C-cCCCCCceEEccCccccc-cchhh---hCCCCCcEEecCC
Q 039126 102 LSTSI---HLESLKKLILSGC--SNLMS--------F-P-ELFYNIKELSLDGTAINE-LPSSI---EYLSKLVILNLGN 162 (295)
Q Consensus 102 l~~~~---~~~~L~~L~l~~~--~~~~~--------~-~-~~~~~L~~L~l~~~~i~~-~~~~~---~~~~~L~~L~l~~ 162 (295)
....+ .+++|++|+|+.+ ...+. . . ..+++|++|++.+|.+.. .+..+ ..+++|++|+++.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 11011 3567777766421 10010 1 1 235688888888887762 22222 3578899999988
Q ss_pred CcCCcC----cccccCCCCCCCeeeccCCCCCCCchhhhhccCCCCcceeecccc
Q 039126 163 SSRLEG----LPSKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDIEAHWC 213 (295)
Q Consensus 163 ~~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~ 213 (295)
|..... ++..+..+++|+.|++++|.+.+.....+... -...+++++.
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a---lg~~~~~~~~ 340 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS---LPMKIDVSDS 340 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH---CCSEEECCSB
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH---cCCEEEecCC
Confidence 743322 33344567899999999987665555555442 1244566553
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.07 E-value=0.00015 Score=63.76 Aligned_cols=117 Identities=14% Similarity=0.145 Sum_probs=58.0
Q ss_pred CccccEEeccCCCCCcccCc----CCCCCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcc-cccCCCCCCCee
Q 039126 108 LESLKKLILSGCSNLMSFPE----LFYNIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQHL 182 (295)
Q Consensus 108 ~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L 182 (295)
+..++.+.+..+. ..+.. ....++.+......+. ...+..+.+|+.+.+..+ +..++ .++.+|.+|+.+
T Consensus 252 ~~~l~~~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 252 CTDLESISIQNNK--LRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp CSSCCEEEECCTT--CEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEE
T ss_pred cccceeEEcCCCc--ceeeccccccccccceeccCceeec--cccccccccccccccccc--cceechhhhcCCCCCCEE
Confidence 6677777776542 11211 1223444433322211 112445666777766543 44333 346667777777
Q ss_pred eccCCCCCCCch-hhhhccCCCCcceeecccccccccccccchhhhccCCcccEEeec
Q 039126 183 NLSCCSNLESFP-NELRNLFPCDLYDIEAHWCSSLETLSGLSIIFTKISRNTQSFDFI 239 (295)
Q Consensus 183 ~l~~~~~~~~~~-~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 239 (295)
++..+ ...+. ..+.++ .+|+.+.+.. +++.+....+ ..|.+|+.+.+.
T Consensus 326 ~lp~~--v~~I~~~aF~~c--~~L~~i~lp~--~l~~I~~~aF---~~C~~L~~i~lp 374 (394)
T 4fs7_A 326 DLPYL--VEEIGKRSFRGC--TSLSNINFPL--SLRKIGANAF---QGCINLKKVELP 374 (394)
T ss_dssp CCCTT--CCEECTTTTTTC--TTCCEECCCT--TCCEECTTTB---TTCTTCCEEEEE
T ss_pred EeCCc--ccEEhHHhccCC--CCCCEEEECc--cccEehHHHh---hCCCCCCEEEEC
Confidence 76542 23332 234444 6777776653 2455544221 456667666664
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.00 E-value=6.1e-06 Score=68.63 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=52.1
Q ss_pred EecCCCCccccch----hhcCCCCCcEEecCCCCCCC--cCCC-CCCCCCCcEeeccccccccccccchhccc--CCcEE
Q 039126 21 PEIPRNSIKQLWK----VVQRLVNLKSINLNHSEHLT--EIPS-LSLATNLESLNFQRYTSLLETHSSIRHLN--KFVAR 91 (295)
Q Consensus 21 L~l~~~~~~~l~~----~~~~l~~L~~L~L~~~~~~~--~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L 91 (295)
++++.|....++. ....+++|+.|+|++|.+.+ .+|. +..+++|++|+|++|. +..+. .+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceE
Confidence 5556664433321 12567777777777777654 3332 4567777777777743 33331 233333 77777
Q ss_pred ccccCcCCceeCCc-------c-cCccccEEe
Q 039126 92 NLKHCRSLTNLSTS-------I-HLESLKKLI 115 (295)
Q Consensus 92 ~l~~~~~l~~l~~~-------~-~~~~L~~L~ 115 (295)
++++|+.-..+|.. + .+++|+.|+
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 77776654444321 1 267777665
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.97 E-value=3.2e-06 Score=66.49 Aligned_cols=111 Identities=13% Similarity=0.042 Sum_probs=51.3
Q ss_pred hhhcCCCCCcEEecCCC-CCCCcCC-----CCCCCCCCcEeecccccccc----ccccchhcccCCcEEccccCcCCce-
Q 039126 33 KVVQRLVNLKSINLNHS-EHLTEIP-----SLSLATNLESLNFQRYTSLL----ETHSSIRHLNKFVARNLKHCRSLTN- 101 (295)
Q Consensus 33 ~~~~~l~~L~~L~L~~~-~~~~~~~-----~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~- 101 (295)
..+...+.|+.|+|++| .+..... .+...+.|++|++++|.... .+...+...+.|++|++++|..-..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455555666666655 4322111 13445556666666543222 1222334445566666665432111
Q ss_pred ---eCCcc-cCccccEEec--cCCCCCcc----cCc---CCCCCceEEccCcccc
Q 039126 102 ---LSTSI-HLESLKKLIL--SGCSNLMS----FPE---LFYNIKELSLDGTAIN 143 (295)
Q Consensus 102 ---l~~~~-~~~~L~~L~l--~~~~~~~~----~~~---~~~~L~~L~l~~~~i~ 143 (295)
+...+ ..++|+.|++ ++|.+..+ +.. ...+|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 11111 2455666666 55543321 111 1235667777776654
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=1.1e-05 Score=63.47 Aligned_cols=93 Identities=10% Similarity=0.028 Sum_probs=47.7
Q ss_pred hhhhCCCCCcEEecCCCcCCcC----cccccCCCCCCCeeeccCCCCCCCc----hhhhhccCCCCcceeec--cccccc
Q 039126 147 SSIEYLSKLVILNLGNSSRLEG----LPSKICKLKSLQHLNLSCCSNLESF----PNELRNLFPCDLYDIEA--HWCSSL 216 (295)
Q Consensus 147 ~~~~~~~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~~~~~~L~~L~l--~~~~~l 216 (295)
..+...++|++|++++|..... +...+...+.|++|++++|.+.+.. ...+... ++|++|++ +++ .+
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n--~~L~~L~L~~~~N-~i 135 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSN--TSLIELRIDNQSQ-PL 135 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGC--SSCCEEECCCCSS-CC
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhC--CCceEEEecCCCC-CC
Confidence 3344556666666666642211 2223444566777777776655432 3333333 66777777 443 34
Q ss_pred cccccc-chhhhccCCcccEEeecCCC
Q 039126 217 ETLSGL-SIIFTKISRNTQSFDFINCF 242 (295)
Q Consensus 217 ~~~~~~-~~~~~~~~~~L~~L~l~~c~ 242 (295)
++.... +.......++|++|++++|.
T Consensus 136 ~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 136 GNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 432211 11112345678888887764
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.83 E-value=0.0012 Score=57.90 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=32.7
Q ss_pred CCceeEecCCCCccccc-hhhcCCCCCcEEecCCCC--CCCcCC--CCCCCCCCcEeecc
Q 039126 16 KNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSE--HLTEIP--SLSLATNLESLNFQ 70 (295)
Q Consensus 16 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~--~~~~~~--~~~~l~~L~~L~l~ 70 (295)
..|+.+.++.+ ++.+. .++.+|.+|+.+.+..+. -+..+. .|..+.+|+.+.+.
T Consensus 64 ~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~ 122 (394)
T 4gt6_A 64 YVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL 122 (394)
T ss_dssp SCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG
T ss_pred CcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC
Confidence 35888888754 66665 456788888888876542 122222 35666666665553
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.71 E-value=0.0024 Score=56.07 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=57.1
Q ss_pred CCCCceeEecCCC---Cccccc-hhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeecccccccccccc-chhccc
Q 039126 14 RPKNLVSPEIPRN---SIKQLW-KVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNFQRYTSLLETHS-SIRHLN 86 (295)
Q Consensus 14 ~~~~L~~L~l~~~---~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~ 86 (295)
.+.+|+.+.+..+ .++.+. ..+.+|..|+.+.+..+ ...++ .+..+.+|+.+.+.. .+..+.. .+..+.
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCY 160 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccc--eeeeecccceeccc
Confidence 4788888877654 255554 44577788887777655 22333 477788888888754 3344433 366677
Q ss_pred CCcEEccccCcCCceeCCccc-CccccEEecc
Q 039126 87 KFVARNLKHCRSLTNLSTSIH-LESLKKLILS 117 (295)
Q Consensus 87 ~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~ 117 (295)
.|+.+.+.. .++.+....+ ...|+.+.+.
T Consensus 161 ~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 161 SLHTVTLPD--SVTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp TCCEEECCT--TCCEECTTTTTTCCCSEEEEC
T ss_pred ccccccccc--eeeEeccccccccceeEEEEC
Confidence 777777654 2333333221 3345555443
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.69 E-value=0.0029 Score=55.54 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCceEEccCccccccchhhhCCCCCcEEecCCCcCCcCcccccCCCCCCCeeeccCCCCCCCchh-hhhccCCCCcceee
Q 039126 131 NIKELSLDGTAINELPSSIEYLSKLVILNLGNSSRLEGLPSKICKLKSLQHLNLSCCSNLESFPN-ELRNLFPCDLYDIE 209 (295)
Q Consensus 131 ~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~~~L~~L~ 209 (295)
.++.+.+..+...--...+..+..++.+...... .....+..+.+|+.+.+..+ ...+.. .+..+ .+|+.++
T Consensus 254 ~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c--~~L~~i~ 326 (394)
T 4fs7_A 254 DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESC--TSLVSID 326 (394)
T ss_dssp SCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC--TTCCEEC
T ss_pred cceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc--cceechhhhcCC--CCCCEEE
Confidence 4445554443222122234455666666554321 11234667888888888663 333333 34444 8888888
Q ss_pred cccccccccccccchhhhccCCcccEEee
Q 039126 210 AHWCSSLETLSGLSIIFTKISRNTQSFDF 238 (295)
Q Consensus 210 l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 238 (295)
+.+ .++.+....+ ..|.+|+.+.+
T Consensus 327 lp~--~v~~I~~~aF---~~c~~L~~i~l 350 (394)
T 4fs7_A 327 LPY--LVEEIGKRSF---RGCTSLSNINF 350 (394)
T ss_dssp CCT--TCCEECTTTT---TTCTTCCEECC
T ss_pred eCC--cccEEhHHhc---cCCCCCCEEEE
Confidence 853 3566654322 35666766665
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.68 E-value=7e-05 Score=62.25 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=34.4
Q ss_pred CCCCceEEccCcccccc---chhhhCCCCCcEEecCCCcCCcCcccccCCCC--CCCeeeccCCCCCCCch
Q 039126 129 FYNIKELSLDGTAINEL---PSSIEYLSKLVILNLGNSSRLEGLPSKICKLK--SLQHLNLSCCSNLESFP 194 (295)
Q Consensus 129 ~~~L~~L~l~~~~i~~~---~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~l~--~L~~L~l~~~~~~~~~~ 194 (295)
+++|+.|++++|.++.+ +..+..+++|+.|++++|. +..+ ..+..+. +|++|++++|++.+.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence 44566666666666533 3444566666666666663 3332 1223233 66666666666554443
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.18 E-value=0.033 Score=48.29 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=30.1
Q ss_pred CCCCceeEecCCCCccccc-hhhcCCCCCcEEecCCCCCCCcCC--CCCCCCCCcEeec
Q 039126 14 RPKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNHSEHLTEIP--SLSLATNLESLNF 69 (295)
Q Consensus 14 ~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l 69 (295)
...+++.+.++.. ++.++ .++.+|.+|+.+.+..+ ...+. .|..+ +|+.+.+
T Consensus 44 ~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~ 98 (379)
T 4h09_A 44 DRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTG 98 (379)
T ss_dssp GGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEE
T ss_pred cccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEEC
Confidence 3566777777643 66665 34677788888877554 22333 35555 3555544
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.91 E-value=0.065 Score=46.39 Aligned_cols=98 Identities=12% Similarity=0.188 Sum_probs=45.5
Q ss_pred CCceEEccCccccccch-hhhCCCCCcEEecCCCcCCcCcc-cccCCCCCCCeeeccCCCCCCCchhhhhccCCCCccee
Q 039126 131 NIKELSLDGTAINELPS-SIEYLSKLVILNLGNSSRLEGLP-SKICKLKSLQHLNLSCCSNLESFPNELRNLFPCDLYDI 208 (295)
Q Consensus 131 ~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L 208 (295)
.|+.+.+..+ ++.+.. .+..+.+|+.+.+..+ +..++ ..+.+|.+|+.+.+.++....-....+.++ .+|+++
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c--~~L~~i 315 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC--VKLSSV 315 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC--TTCCEE
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCC--CCCCEE
Confidence 4445544332 333322 2345556666666442 33333 345566667766665543322222333443 666666
Q ss_pred ecccccccccccccchhhhccCCcccEEee
Q 039126 209 EAHWCSSLETLSGLSIIFTKISRNTQSFDF 238 (295)
Q Consensus 209 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 238 (295)
.+.. .++.+....+ ..|.+|+.+.+
T Consensus 316 ~lp~--~l~~I~~~aF---~~C~~L~~i~i 340 (379)
T 4h09_A 316 TLPT--ALKTIQVYAF---KNCKALSTISY 340 (379)
T ss_dssp ECCT--TCCEECTTTT---TTCTTCCCCCC
T ss_pred EcCc--cccEEHHHHh---hCCCCCCEEEE
Confidence 6642 2444443211 34455555444
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.70 E-value=0.019 Score=41.94 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=31.2
Q ss_pred eEecCCCCcc--ccchhhcCCCCCcEEecCCCCCCCcCC-CCCCCCCCcEeeccccc
Q 039126 20 SPEIPRNSIK--QLWKVVQRLVNLKSINLNHSEHLTEIP-SLSLATNLESLNFQRYT 73 (295)
Q Consensus 20 ~L~l~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 73 (295)
+++.+++.++ .+|..+. .+|++|+|++|.+..-.+ .|..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5666666666 6664321 346777777776543222 36667777777777653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.59 E-value=0.011 Score=46.44 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=42.2
Q ss_pred hhhCCCCCcEEecCCCcCCc----CcccccCCCCCCCeeeccCCCCCCCchhhhhccC--CCCcceeeccccc--ccccc
Q 039126 148 SIEYLSKLVILNLGNSSRLE----GLPSKICKLKSLQHLNLSCCSNLESFPNELRNLF--PCDLYDIEAHWCS--SLETL 219 (295)
Q Consensus 148 ~~~~~~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~--~~~L~~L~l~~~~--~l~~~ 219 (295)
.+..-+.|+.|++++|..-. .+...+..-+.|++|++++|.+.+.....+...+ ...|++|+++++. .+..-
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 33444556666666653221 1222233445566666666665543333322211 1556777766432 12211
Q ss_pred cc-cchhhhccCCcccEEeecCC
Q 039126 220 SG-LSIIFTKISRNTQSFDFINC 241 (295)
Q Consensus 220 ~~-~~~~~~~~~~~L~~L~l~~c 241 (295)
.. .+......-+.|+.|+++.+
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHhCCCcCeEeccCC
Confidence 10 01111234456777777654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.52 E-value=0.029 Score=44.06 Aligned_cols=80 Identities=20% Similarity=0.176 Sum_probs=45.6
Q ss_pred CCceEEccCcccc-----ccchhhhCCCCCcEEecCCCcCCc----CcccccCCCCCCCeeeccCCC--CCC-----Cch
Q 039126 131 NIKELSLDGTAIN-----ELPSSIEYLSKLVILNLGNSSRLE----GLPSKICKLKSLQHLNLSCCS--NLE-----SFP 194 (295)
Q Consensus 131 ~L~~L~l~~~~i~-----~~~~~~~~~~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~--~~~-----~~~ 194 (295)
.|+.|++++|.+. .+...+..-+.|+.|+++.|.... .+-+.+..-+.|++|++++|. ..+ .+.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 4556666666654 334444455678888887774322 133345555668888887542 122 233
Q ss_pred hhhhccCCCCcceeeccc
Q 039126 195 NELRNLFPCDLYDIEAHW 212 (295)
Q Consensus 195 ~~l~~~~~~~L~~L~l~~ 212 (295)
..+..- ++|++|+++.
T Consensus 151 ~aL~~N--~tL~~L~l~~ 166 (197)
T 1pgv_A 151 MAIEEN--ESLLRVGISF 166 (197)
T ss_dssp HHHHHC--SSCCEEECCC
T ss_pred HHHHhC--CCcCeEeccC
Confidence 344444 7888888764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.91 E-value=0.11 Score=37.81 Aligned_cols=51 Identities=27% Similarity=0.425 Sum_probs=27.2
Q ss_pred EEeccCCCCCc--ccCcCCC-CCceEEccCccccccchh-hhCCCCCcEEecCCCc
Q 039126 113 KLILSGCSNLM--SFPELFY-NIKELSLDGTAINELPSS-IEYLSKLVILNLGNSS 164 (295)
Q Consensus 113 ~L~l~~~~~~~--~~~~~~~-~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~ 164 (295)
.++-+++. +. .+|..++ ++++|++++|.|+.++.. |..+++|+.|++++|.
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCC-CccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 34444433 33 5555444 566666666666655443 3445566666666553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.67 E-value=51 Score=22.09 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=15.5
Q ss_pred CCCceeEecCCCCccccc-hhhcCCCCCcEEecCC
Q 039126 15 PKNLVSPEIPRNSIKQLW-KVVQRLVNLKSINLNH 48 (295)
Q Consensus 15 ~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~ 48 (295)
+.+|+.+.|+.+ ++.+. ..+.+|.+|+.+.+.+
T Consensus 19 c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 19 NTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 555555555443 33332 2344555555555444
Done!