BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039127
         (162 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YR0|A Chain A, Crystal Structure Of Phosphinothricin Acetyltransferase
           From Agrobacterium Tumefaciens
 pdb|1YR0|B Chain B, Crystal Structure Of Phosphinothricin Acetyltransferase
           From Agrobacterium Tumefaciens
 pdb|1YR0|C Chain C, Crystal Structure Of Phosphinothricin Acetyltransferase
           From Agrobacterium Tumefaciens
 pdb|1YR0|D Chain D, Crystal Structure Of Phosphinothricin Acetyltransferase
           From Agrobacterium Tumefaciens
          Length = 175

 Score = 27.7 bits (60), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 67  PVYNDKTVNFNFALDDTWKEKYVDWTNMRDLFAAVASRS-KVIVTTRNQGVAS 118
            +YND  VN        W E  VD  N +D FAA  SR   VIV   +  VA 
Sbjct: 20  EIYNDAVVNTTA----IWNEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAG 68


>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
           Glutathione
          Length = 132

 Score = 26.9 bits (58), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 8/21 (38%), Positives = 18/21 (85%)

Query: 122 TMPAYELKKLVNDNCLLIFSQ 142
           +MP  ++++ ++DNC++IFS+
Sbjct: 22  SMPVNQIQETISDNCVVIFSK 42


>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
 pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
          Length = 146

 Score = 26.6 bits (57), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 18/23 (78%)

Query: 120 MGTMPAYELKKLVNDNCLLIFSQ 142
           + T P  ++++ ++DNC++IFS+
Sbjct: 34  LATAPVNQIQETISDNCVVIFSK 56


>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
           Of Glutaredoxin 2 From Human Cdna
          Length = 130

 Score = 26.6 bits (57), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 18/23 (78%)

Query: 120 MGTMPAYELKKLVNDNCLLIFSQ 142
           + T P  ++++ ++DNC++IFS+
Sbjct: 12  LATAPVNQIQETISDNCVVIFSK 34


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,094,173
Number of Sequences: 62578
Number of extensions: 214206
Number of successful extensions: 435
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 5
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)