Query 039127
Match_columns 162
No_of_seqs 214 out of 1158
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:31:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 4E-24 8.6E-29 186.6 9.5 114 26-148 161-334 (889)
2 PLN03210 Resistant to P. syrin 99.9 2E-23 4.4E-28 187.7 12.3 126 19-151 180-371 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.9 5.9E-24 1.3E-28 164.9 6.3 111 31-148 7-174 (287)
4 COG2256 MGS1 ATPase related to 99.3 1.6E-11 3.5E-16 98.0 8.9 113 21-142 22-174 (436)
5 PF05729 NACHT: NACHT domain 99.3 3.5E-11 7.5E-16 85.5 8.5 95 49-143 1-162 (166)
6 PRK06893 DNA replication initi 99.2 3.1E-11 6.7E-16 91.4 7.4 123 22-147 15-177 (229)
7 KOG2028 ATPase related to the 99.1 6.2E-10 1.3E-14 88.5 8.6 113 21-142 136-292 (554)
8 TIGR00635 ruvB Holliday juncti 99.0 1.4E-09 3.1E-14 85.3 6.9 120 23-144 4-172 (305)
9 PRK13342 recombination factor 99.0 5.4E-09 1.2E-13 85.6 10.3 112 22-143 11-163 (413)
10 PF01637 Arch_ATPase: Archaeal 99.0 3.1E-09 6.6E-14 79.3 8.0 111 25-143 1-203 (234)
11 PRK09087 hypothetical protein; 98.9 1.7E-08 3.6E-13 76.4 11.1 96 48-144 44-166 (226)
12 PRK00080 ruvB Holliday junctio 98.9 2.9E-09 6.3E-14 84.6 6.7 124 20-145 22-194 (328)
13 PF13173 AAA_14: AAA domain 98.9 9.4E-09 2E-13 70.9 8.1 87 48-136 2-127 (128)
14 PF05496 RuvB_N: Holliday junc 98.9 3.5E-08 7.6E-13 74.1 11.5 123 21-144 22-192 (233)
15 PRK13341 recombination factor 98.9 2E-08 4.4E-13 87.1 10.6 115 21-144 26-181 (725)
16 PRK06620 hypothetical protein; 98.8 3.4E-08 7.3E-13 74.2 9.7 93 49-144 45-160 (214)
17 PRK08084 DNA replication initi 98.8 2E-08 4.3E-13 76.4 8.4 97 48-144 45-180 (235)
18 PRK08727 hypothetical protein; 98.8 2.3E-08 4.9E-13 76.0 7.5 97 49-145 42-176 (233)
19 TIGR03420 DnaA_homol_Hda DnaA 98.8 4.7E-08 1E-12 73.3 8.7 96 48-143 38-171 (226)
20 TIGR03015 pepcterm_ATPase puta 98.7 4.1E-07 8.9E-12 69.9 12.7 96 48-144 43-205 (269)
21 PF00308 Bac_DnaA: Bacterial d 98.7 2.3E-08 4.9E-13 75.3 5.6 120 21-144 7-179 (219)
22 PRK05642 DNA replication initi 98.7 1.1E-07 2.3E-12 72.3 9.0 98 48-145 45-180 (234)
23 PLN03025 replication factor C 98.7 1.1E-07 2.4E-12 75.4 8.8 118 21-144 11-171 (319)
24 PRK08903 DnaA regulatory inact 98.7 8.4E-08 1.8E-12 72.3 7.7 95 48-142 42-168 (227)
25 PRK14961 DNA polymerase III su 98.7 3.2E-07 7E-12 74.0 11.3 116 22-143 15-190 (363)
26 cd00009 AAA The AAA+ (ATPases 98.7 1.5E-07 3.3E-12 64.6 8.1 68 48-115 19-131 (151)
27 PRK06645 DNA polymerase III su 98.7 2.5E-07 5.5E-12 77.4 10.5 118 21-144 19-200 (507)
28 PRK12402 replication factor C 98.6 2.6E-07 5.7E-12 73.2 9.8 117 22-144 14-197 (337)
29 PRK00411 cdc6 cell division co 98.6 1.1E-07 2.4E-12 77.1 6.7 119 22-144 29-220 (394)
30 PRK00440 rfc replication facto 98.6 4.3E-07 9.3E-12 71.4 9.8 117 21-144 15-174 (319)
31 PRK14962 DNA polymerase III su 98.6 4.1E-07 8.8E-12 75.7 10.1 119 21-144 12-189 (472)
32 PRK07003 DNA polymerase III su 98.6 4.2E-07 9E-12 78.7 10.2 117 22-144 15-191 (830)
33 PRK14963 DNA polymerase III su 98.6 4.5E-07 9.8E-12 76.0 10.2 117 22-144 13-188 (504)
34 PRK14957 DNA polymerase III su 98.6 7.1E-07 1.5E-11 75.3 11.2 116 21-142 14-189 (546)
35 PRK04841 transcriptional regul 98.6 6.9E-07 1.5E-11 79.3 11.5 117 21-144 12-199 (903)
36 PRK14960 DNA polymerase III su 98.5 9.5E-07 2.1E-11 75.6 10.8 117 22-144 14-190 (702)
37 PRK05564 DNA polymerase III su 98.5 1.2E-06 2.5E-11 69.3 10.7 115 23-143 4-164 (313)
38 PHA02544 44 clamp loader, smal 98.5 1.7E-06 3.8E-11 68.2 11.2 115 21-141 19-170 (316)
39 PRK14956 DNA polymerase III su 98.5 1.1E-06 2.3E-11 73.0 10.2 118 21-144 16-193 (484)
40 PRK04195 replication factor C 98.5 8.5E-07 1.8E-11 74.1 9.8 119 21-144 12-173 (482)
41 PRK14949 DNA polymerase III su 98.5 1.6E-06 3.4E-11 76.4 11.3 116 22-143 15-190 (944)
42 TIGR01242 26Sp45 26S proteasom 98.4 1.6E-06 3.4E-11 70.0 9.5 100 48-147 156-309 (364)
43 PRK12323 DNA polymerase III su 98.4 1.4E-06 3E-11 74.6 9.1 116 22-143 15-195 (700)
44 PRK14951 DNA polymerase III su 98.4 3.3E-06 7.2E-11 72.2 11.0 116 22-143 15-195 (618)
45 PRK05896 DNA polymerase III su 98.4 3.2E-06 7E-11 71.9 10.6 117 21-143 14-190 (605)
46 PRK07994 DNA polymerase III su 98.4 3.2E-06 7E-11 72.6 10.6 117 21-143 14-190 (647)
47 PRK08691 DNA polymerase III su 98.4 2.6E-06 5.6E-11 73.4 9.9 116 22-143 15-190 (709)
48 PF00004 AAA: ATPase family as 98.4 1.8E-06 3.9E-11 58.9 7.4 25 51-75 1-25 (132)
49 TIGR02397 dnaX_nterm DNA polym 98.4 5.2E-06 1.1E-10 66.4 10.8 117 21-143 12-188 (355)
50 PRK14964 DNA polymerase III su 98.4 3.1E-06 6.7E-11 70.6 9.6 119 21-144 11-188 (491)
51 TIGR00678 holB DNA polymerase 98.3 1E-05 2.3E-10 59.2 11.1 96 48-143 14-167 (188)
52 PRK14958 DNA polymerase III su 98.3 4E-06 8.7E-11 70.5 10.0 114 22-141 15-188 (509)
53 PRK07471 DNA polymerase III su 98.3 1.2E-05 2.6E-10 65.0 11.9 69 76-144 143-213 (365)
54 TIGR02881 spore_V_K stage V sp 98.3 3.2E-06 7E-11 65.2 8.3 98 47-144 41-191 (261)
55 TIGR00362 DnaA chromosomal rep 98.3 2.6E-06 5.5E-11 69.7 8.1 97 48-144 136-281 (405)
56 PRK12422 chromosomal replicati 98.3 1.9E-06 4E-11 71.4 7.3 97 48-144 141-284 (445)
57 PRK09112 DNA polymerase III su 98.3 9E-06 1.9E-10 65.4 10.9 117 21-143 21-212 (351)
58 PRK07764 DNA polymerase III su 98.3 5.9E-06 1.3E-10 72.9 10.5 117 21-143 13-191 (824)
59 PRK14952 DNA polymerase III su 98.3 8.8E-06 1.9E-10 69.4 11.3 117 21-143 11-189 (584)
60 PRK14087 dnaA chromosomal repl 98.3 3.9E-06 8.4E-11 69.6 8.8 97 48-144 141-288 (450)
61 PRK14955 DNA polymerase III su 98.3 3.8E-06 8.2E-11 68.6 8.5 118 21-143 14-198 (397)
62 KOG0989 Replication factor C, 98.3 5.5E-06 1.2E-10 64.7 8.8 117 21-144 34-201 (346)
63 PRK00149 dnaA chromosomal repl 98.3 3.1E-06 6.8E-11 70.1 8.0 97 48-144 148-293 (450)
64 TIGR02880 cbbX_cfxQ probable R 98.3 3.2E-06 6.9E-11 66.1 7.6 94 50-143 60-207 (284)
65 PRK14970 DNA polymerase III su 98.3 9.9E-06 2.1E-10 65.3 10.5 118 21-144 15-180 (367)
66 PRK07940 DNA polymerase III su 98.3 1.1E-05 2.3E-10 65.8 10.7 120 23-142 5-187 (394)
67 TIGR02928 orc1/cdc6 family rep 98.3 3.1E-06 6.8E-11 67.9 7.4 45 23-70 15-62 (365)
68 PRK09111 DNA polymerase III su 98.3 1.1E-05 2.3E-10 69.1 10.9 117 21-143 22-203 (598)
69 PRK14969 DNA polymerase III su 98.3 1E-05 2.2E-10 68.3 10.4 116 22-143 15-190 (527)
70 PRK14959 DNA polymerase III su 98.2 1.1E-05 2.5E-10 68.9 10.5 118 22-144 15-191 (624)
71 PRK14086 dnaA chromosomal repl 98.2 3.1E-06 6.7E-11 72.1 7.0 96 49-144 315-459 (617)
72 COG0593 DnaA ATPase involved i 98.2 5.2E-06 1.1E-10 67.6 7.9 98 47-144 112-257 (408)
73 TIGR03345 VI_ClpV1 type VI sec 98.2 6.4E-06 1.4E-10 73.1 9.0 111 22-142 186-361 (852)
74 TIGR02639 ClpA ATP-dependent C 98.2 8.6E-06 1.9E-10 71.3 9.5 112 22-143 181-357 (731)
75 PF13401 AAA_22: AAA domain; P 98.2 3E-06 6.6E-11 57.9 5.3 25 48-72 4-28 (131)
76 TIGR02903 spore_lon_C ATP-depe 98.2 8.5E-06 1.8E-10 70.0 8.9 43 21-70 152-197 (615)
77 PRK14954 DNA polymerase III su 98.2 2.5E-05 5.3E-10 67.1 11.1 117 21-143 14-198 (620)
78 PRK06305 DNA polymerase III su 98.2 1.7E-05 3.6E-10 65.9 9.8 117 21-143 15-192 (451)
79 COG2909 MalT ATP-dependent tra 98.2 1.8E-05 4E-10 68.9 10.1 115 23-144 19-207 (894)
80 PRK03992 proteasome-activating 98.2 1.6E-05 3.4E-10 64.8 9.3 99 47-145 164-316 (389)
81 PRK14950 DNA polymerase III su 98.1 2.6E-05 5.6E-10 66.8 10.8 118 21-144 14-192 (585)
82 CHL00181 cbbX CbbX; Provisiona 98.1 1.6E-05 3.5E-10 62.2 8.6 95 50-144 61-209 (287)
83 PRK08451 DNA polymerase III su 98.1 4.2E-05 9.1E-10 64.6 11.6 117 21-143 12-188 (535)
84 PRK14088 dnaA chromosomal repl 98.1 1.3E-05 2.8E-10 66.3 8.5 97 48-144 130-276 (440)
85 TIGR02902 spore_lonB ATP-depen 98.1 2.6E-05 5.7E-10 66.0 10.3 117 21-144 63-276 (531)
86 PRK14965 DNA polymerase III su 98.1 2.4E-05 5.3E-10 66.8 10.1 115 22-142 15-189 (576)
87 PRK14971 DNA polymerase III su 98.1 3.3E-05 7.2E-10 66.4 10.5 117 21-143 15-192 (614)
88 CHL00095 clpC Clp protease ATP 98.1 1.4E-05 3E-10 70.8 8.4 43 23-72 179-224 (821)
89 PRK08116 hypothetical protein; 98.1 5.1E-06 1.1E-10 64.4 5.0 65 50-114 116-221 (268)
90 PRK08181 transposase; Validate 98.1 3.6E-06 7.8E-11 65.3 4.1 65 50-114 108-209 (269)
91 PRK06526 transposase; Provisio 98.1 4.3E-06 9.3E-11 64.4 4.2 65 49-114 99-201 (254)
92 PRK14953 DNA polymerase III su 98.1 5.5E-05 1.2E-09 63.4 11.0 117 21-143 14-190 (486)
93 PF13191 AAA_16: AAA ATPase do 98.1 3.1E-06 6.8E-11 61.1 3.2 48 24-75 1-51 (185)
94 PTZ00112 origin recognition co 98.0 8.9E-06 1.9E-10 71.7 6.1 47 23-71 755-804 (1164)
95 PF01695 IstB_IS21: IstB-like 98.0 2.6E-06 5.7E-11 62.2 2.4 66 48-114 47-150 (178)
96 PRK06647 DNA polymerase III su 98.0 6.3E-05 1.4E-09 64.0 11.0 118 21-144 14-191 (563)
97 PRK05563 DNA polymerase III su 98.0 6E-05 1.3E-09 64.2 10.7 117 21-143 14-190 (559)
98 PF13177 DNA_pol3_delta2: DNA 98.0 4.6E-05 9.9E-10 54.7 8.5 57 76-132 104-162 (162)
99 PRK07133 DNA polymerase III su 98.0 8.3E-05 1.8E-09 64.7 11.2 116 21-142 16-188 (725)
100 PRK14948 DNA polymerase III su 98.0 6.8E-05 1.5E-09 64.5 10.6 115 22-142 15-191 (620)
101 TIGR02639 ClpA ATP-dependent C 98.0 0.00011 2.3E-09 64.6 11.9 121 23-143 454-661 (731)
102 PRK09183 transposase/IS protei 98.0 8.6E-06 1.9E-10 62.9 4.3 65 49-114 103-206 (259)
103 PRK11034 clpA ATP-dependent Cl 98.0 2.6E-05 5.7E-10 68.4 7.8 113 23-143 186-361 (758)
104 PRK12377 putative replication 98.0 1.1E-05 2.5E-10 61.8 4.9 65 49-113 102-205 (248)
105 PF14532 Sigma54_activ_2: Sigm 98.0 1.7E-05 3.7E-10 55.3 5.1 65 50-114 23-110 (138)
106 TIGR03346 chaperone_ClpB ATP-d 98.0 4.5E-05 9.8E-10 67.9 8.9 42 23-71 173-217 (852)
107 PRK10865 protein disaggregatio 97.9 5.8E-05 1.3E-09 67.2 9.5 44 22-72 177-223 (857)
108 PF05673 DUF815: Protein of un 97.9 5.1E-05 1.1E-09 57.9 7.7 90 21-116 25-153 (249)
109 PF07728 AAA_5: AAA domain (dy 97.9 1.2E-05 2.5E-10 55.9 4.0 48 51-98 2-89 (139)
110 PF02562 PhoH: PhoH-like prote 97.9 1.9E-05 4.1E-10 58.9 5.2 35 76-113 121-155 (205)
111 CHL00176 ftsH cell division pr 97.9 7.7E-05 1.7E-09 64.3 9.6 122 23-144 183-366 (638)
112 PRK05707 DNA polymerase III su 97.9 0.00011 2.4E-09 58.7 9.7 68 76-143 108-177 (328)
113 PF00910 RNA_helicase: RNA hel 97.9 2.1E-05 4.5E-10 52.6 4.7 19 51-69 1-19 (107)
114 PRK10536 hypothetical protein; 97.9 6.3E-05 1.4E-09 57.9 7.7 36 76-114 178-213 (262)
115 COG2255 RuvB Holliday junction 97.9 4.4E-05 9.5E-10 59.3 6.8 123 21-144 24-194 (332)
116 PRK08939 primosomal protein Dn 97.9 1.9E-05 4E-10 62.4 4.8 66 48-113 156-260 (306)
117 COG0466 Lon ATP-dependent Lon 97.9 4.4E-05 9.5E-10 65.6 7.1 122 23-145 323-509 (782)
118 TIGR02640 gas_vesic_GvpN gas v 97.8 0.00025 5.4E-09 54.8 10.4 68 76-143 107-197 (262)
119 PRK08058 DNA polymerase III su 97.8 0.00017 3.6E-09 57.6 9.5 97 47-143 27-181 (329)
120 TIGR03345 VI_ClpV1 type VI sec 97.8 9.2E-05 2E-09 65.9 8.7 91 23-113 566-718 (852)
121 PRK06835 DNA replication prote 97.8 2.7E-05 5.9E-10 62.1 4.9 65 49-113 184-288 (329)
122 PTZ00454 26S protease regulato 97.8 0.00019 4.2E-09 58.7 9.6 97 47-143 178-328 (398)
123 PRK06921 hypothetical protein; 97.8 4.1E-05 9E-10 59.3 5.4 66 48-113 117-224 (266)
124 PF13207 AAA_17: AAA domain; P 97.8 1.7E-05 3.6E-10 53.6 2.8 33 50-83 1-33 (121)
125 PRK10787 DNA-binding ATP-depen 97.8 0.00015 3.2E-09 64.0 9.2 121 23-144 322-506 (784)
126 KOG0741 AAA+-type ATPase [Post 97.8 9.1E-05 2E-09 62.0 7.3 102 46-149 536-692 (744)
127 PTZ00202 tuzin; Provisional 97.7 0.00011 2.3E-09 60.7 7.0 53 18-73 257-311 (550)
128 PRK10865 protein disaggregatio 97.7 0.00036 7.7E-09 62.3 10.9 91 23-113 568-720 (857)
129 COG1373 Predicted ATPase (AAA+ 97.7 0.00031 6.8E-09 57.5 9.4 86 50-138 39-161 (398)
130 COG1484 DnaC DNA replication p 97.7 3.4E-05 7.3E-10 59.4 3.4 26 48-73 105-130 (254)
131 PRK07952 DNA replication prote 97.7 5.2E-05 1.1E-09 58.1 4.4 66 48-113 99-204 (244)
132 PRK11331 5-methylcytosine-spec 97.7 0.00011 2.3E-09 60.7 6.4 41 23-72 175-218 (459)
133 KOG0744 AAA+-type ATPase [Post 97.7 0.00018 3.8E-09 57.0 7.2 28 48-75 177-204 (423)
134 COG1875 NYN ribonuclease and A 97.7 9.8E-05 2.1E-09 59.2 5.8 35 76-113 353-387 (436)
135 PRK07399 DNA polymerase III su 97.7 0.00055 1.2E-08 54.3 10.1 69 76-144 126-195 (314)
136 TIGR01241 FtsH_fam ATP-depende 97.7 0.00025 5.4E-09 59.6 8.4 97 48-144 88-238 (495)
137 PF00158 Sigma54_activat: Sigm 97.7 0.00012 2.6E-09 53.0 5.6 65 50-114 24-144 (168)
138 PHA02244 ATPase-like protein 97.7 0.00026 5.7E-09 57.2 8.0 64 50-113 121-230 (383)
139 COG1223 Predicted ATPase (AAA+ 97.6 0.0003 6.6E-09 54.3 7.9 123 22-144 120-297 (368)
140 PRK08118 topology modulation p 97.6 3.8E-05 8.2E-10 55.4 2.9 26 50-75 3-28 (167)
141 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00023 5.1E-09 63.4 8.3 91 23-113 565-717 (852)
142 PF13671 AAA_33: AAA domain; P 97.6 0.00021 4.5E-09 49.5 6.4 24 50-73 1-24 (143)
143 TIGR00763 lon ATP-dependent pr 97.6 0.00023 5.1E-09 62.8 8.1 120 23-143 320-504 (775)
144 COG0572 Udk Uridine kinase [Nu 97.6 0.00011 2.3E-09 55.2 5.1 61 46-106 6-85 (218)
145 CHL00195 ycf46 Ycf46; Provisio 97.6 0.00031 6.7E-09 58.9 8.2 98 47-144 258-405 (489)
146 COG2812 DnaX DNA polymerase II 97.6 0.00017 3.8E-09 60.5 6.6 117 22-144 15-191 (515)
147 KOG1532 GTPase XAB1, interacts 97.6 6.2E-05 1.3E-09 58.2 3.7 36 46-81 17-56 (366)
148 CHL00095 clpC Clp protease ATP 97.6 0.00038 8.3E-09 61.9 8.9 78 23-100 509-637 (821)
149 PRK11034 clpA ATP-dependent Cl 97.6 0.00032 6.9E-09 61.7 8.3 78 23-100 458-583 (758)
150 PRK08233 hypothetical protein; 97.6 0.00011 2.5E-09 53.0 4.5 36 48-83 3-38 (182)
151 TIGR03689 pup_AAA proteasome A 97.6 0.0003 6.5E-09 59.2 7.3 97 48-144 216-378 (512)
152 TIGR01817 nifA Nif-specific re 97.5 0.0013 2.9E-08 55.7 11.1 88 21-113 194-340 (534)
153 PHA00729 NTP-binding motif con 97.5 0.0021 4.5E-08 48.7 10.9 25 48-72 17-41 (226)
154 KOG0991 Replication factor C, 97.5 0.00015 3.3E-09 55.1 4.7 72 22-99 26-138 (333)
155 PRK06696 uridine kinase; Valid 97.5 0.00013 2.9E-09 54.9 4.4 50 31-84 9-62 (223)
156 PRK06871 DNA polymerase III su 97.5 0.0017 3.7E-08 51.8 10.8 68 76-143 109-178 (325)
157 COG4618 ArpD ABC-type protease 97.5 0.00035 7.5E-09 58.2 7.0 25 49-73 363-387 (580)
158 COG0396 sufC Cysteine desulfur 97.5 0.00071 1.5E-08 51.1 8.0 27 49-75 31-57 (251)
159 COG2884 FtsE Predicted ATPase 97.5 0.00045 9.7E-09 50.9 6.8 28 48-75 28-55 (223)
160 PF13604 AAA_30: AAA domain; P 97.5 0.00018 3.9E-09 53.2 4.8 62 49-112 19-129 (196)
161 PRK07261 topology modulation p 97.5 8E-05 1.7E-09 53.9 2.7 25 50-74 2-26 (171)
162 KOG1969 DNA replication checkp 97.5 0.00035 7.6E-09 60.4 6.6 55 45-99 323-412 (877)
163 PF13238 AAA_18: AAA domain; P 97.5 9.1E-05 2E-09 50.1 2.6 22 51-72 1-22 (129)
164 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00012 2.6E-09 58.8 3.5 51 23-74 51-104 (361)
165 PTZ00361 26 proteosome regulat 97.4 0.00045 9.8E-09 57.2 6.9 97 48-144 217-367 (438)
166 TIGR02974 phageshock_pspF psp 97.4 0.00087 1.9E-08 53.5 8.1 64 50-113 24-143 (329)
167 KOG2543 Origin recognition com 97.4 0.0042 9E-08 50.3 11.7 51 22-75 5-57 (438)
168 PRK06090 DNA polymerase III su 97.4 0.0031 6.7E-08 50.2 11.0 68 76-143 110-179 (319)
169 COG0542 clpA ATP-binding subun 97.4 0.0011 2.4E-08 58.1 9.1 79 23-101 491-620 (786)
170 PF05621 TniB: Bacterial TniB 97.4 0.00055 1.2E-08 53.7 6.4 51 20-73 31-86 (302)
171 PRK07667 uridine kinase; Provi 97.4 0.00029 6.2E-09 52.0 4.5 48 31-83 5-56 (193)
172 TIGR01243 CDC48 AAA family ATP 97.3 0.0012 2.5E-08 58.1 8.7 96 48-143 487-634 (733)
173 PF00485 PRK: Phosphoribulokin 97.3 0.00018 3.9E-09 52.9 3.0 24 50-73 1-24 (194)
174 KOG2004 Mitochondrial ATP-depe 97.3 0.001 2.2E-08 57.6 7.6 121 23-144 411-596 (906)
175 COG3899 Predicted ATPase [Gene 97.3 0.001 2.2E-08 59.4 8.0 46 25-73 2-49 (849)
176 PRK05480 uridine/cytidine kina 97.3 0.00024 5.3E-09 52.8 3.5 37 47-83 5-43 (209)
177 cd03228 ABCC_MRP_Like The MRP 97.3 0.0026 5.7E-08 45.8 8.8 24 49-72 29-52 (171)
178 PRK06762 hypothetical protein; 97.3 0.00021 4.6E-09 51.0 3.0 24 49-72 3-26 (166)
179 PRK07993 DNA polymerase III su 97.3 0.004 8.6E-08 49.9 10.5 68 76-143 110-179 (334)
180 TIGR02858 spore_III_AA stage I 97.3 0.0031 6.8E-08 49.0 9.5 77 31-118 100-233 (270)
181 PRK03839 putative kinase; Prov 97.3 0.00019 4.2E-09 52.0 2.6 26 50-75 2-27 (180)
182 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0007 1.5E-08 57.7 6.0 29 47-75 222-250 (802)
183 PRK08699 DNA polymerase III su 97.3 0.0019 4E-08 51.6 8.3 67 77-143 116-184 (325)
184 TIGR00235 udk uridine kinase. 97.3 0.00031 6.7E-09 52.2 3.6 36 47-82 5-42 (207)
185 cd03216 ABC_Carb_Monos_I This 97.2 0.0025 5.4E-08 45.6 8.1 69 49-117 27-145 (163)
186 PF02463 SMC_N: RecF/RecN/SMC 97.2 0.0014 3.1E-08 48.9 7.1 45 76-120 160-205 (220)
187 PF07724 AAA_2: AAA domain (Cd 97.2 0.00056 1.2E-08 49.6 4.6 52 48-99 3-104 (171)
188 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00026 5.6E-09 51.3 2.9 26 47-72 2-27 (188)
189 PRK15429 formate hydrogenlyase 97.2 0.0015 3.2E-08 57.1 8.0 88 22-114 375-521 (686)
190 cd02024 NRK1 Nicotinamide ribo 97.2 0.00031 6.6E-09 51.7 3.3 35 50-84 1-35 (187)
191 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0029 6.4E-08 44.3 8.1 68 49-118 27-131 (144)
192 TIGR00602 rad24 checkpoint pro 97.2 0.0041 9E-08 53.8 10.5 47 22-70 83-132 (637)
193 cd03247 ABCC_cytochrome_bd The 97.2 0.0029 6.3E-08 45.8 8.3 24 49-72 29-52 (178)
194 smart00382 AAA ATPases associa 97.2 0.00033 7.2E-09 47.2 3.2 27 49-75 3-29 (148)
195 KOG0733 Nuclear AAA ATPase (VC 97.2 0.003 6.4E-08 54.0 9.3 97 48-144 545-692 (802)
196 PRK13695 putative NTPase; Prov 97.2 0.00097 2.1E-08 48.1 5.7 22 50-71 2-23 (174)
197 TIGR01243 CDC48 AAA family ATP 97.2 0.0019 4.1E-08 56.9 8.5 96 48-143 212-358 (733)
198 PRK11608 pspF phage shock prot 97.2 0.0012 2.6E-08 52.6 6.7 86 23-113 6-150 (326)
199 PLN00020 ribulose bisphosphate 97.2 0.00051 1.1E-08 55.5 4.2 30 46-75 146-175 (413)
200 COG2607 Predicted ATPase (AAA+ 97.2 0.0024 5.3E-08 48.7 7.5 66 48-113 85-182 (287)
201 PTZ00301 uridine kinase; Provi 97.2 0.00035 7.5E-09 52.4 3.0 37 48-84 3-45 (210)
202 COG0470 HolB ATPase involved i 97.2 0.0018 4E-08 50.8 7.2 100 31-135 12-172 (325)
203 COG4088 Predicted nucleotide k 97.1 0.0037 7.9E-08 46.8 8.2 27 49-75 2-28 (261)
204 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0026 5.6E-08 46.4 7.4 70 49-118 26-136 (177)
205 PRK06547 hypothetical protein; 97.1 0.00066 1.4E-08 49.3 4.3 37 47-84 14-50 (172)
206 PF07726 AAA_3: ATPase family 97.1 0.00059 1.3E-08 47.1 3.7 64 51-114 2-112 (131)
207 PRK13539 cytochrome c biogenes 97.1 0.0027 5.9E-08 47.1 7.6 23 49-71 29-51 (207)
208 cd02019 NK Nucleoside/nucleoti 97.1 0.00035 7.5E-09 42.9 2.3 22 50-71 1-22 (69)
209 PRK09270 nucleoside triphospha 97.1 0.00087 1.9E-08 50.6 5.0 39 46-84 31-74 (229)
210 PRK06964 DNA polymerase III su 97.1 0.0061 1.3E-07 49.0 10.0 68 76-143 134-203 (342)
211 PF04665 Pox_A32: Poxvirus A32 97.1 0.0015 3.3E-08 49.9 6.1 25 49-73 14-38 (241)
212 KOG0924 mRNA splicing factor A 97.1 0.0031 6.7E-08 54.5 8.4 35 31-74 363-398 (1042)
213 cd03214 ABC_Iron-Siderophores_ 97.1 0.0029 6.2E-08 45.9 7.4 24 49-72 26-49 (180)
214 PF03969 AFG1_ATPase: AFG1-lik 97.1 0.0018 3.9E-08 52.4 6.8 30 46-75 60-89 (362)
215 COG1474 CDC6 Cdc6-related prot 97.1 0.0028 6.1E-08 51.4 7.9 48 24-74 18-68 (366)
216 PHA02774 E1; Provisional 97.1 0.0022 4.8E-08 54.6 7.5 39 46-84 432-489 (613)
217 cd04139 RalA_RalB RalA/RalB su 97.1 0.0029 6.4E-08 44.2 7.2 23 50-72 2-24 (164)
218 TIGR00991 3a0901s02IAP34 GTP-b 97.1 0.0036 7.7E-08 49.6 8.1 49 22-72 7-62 (313)
219 PRK05022 anaerobic nitric oxid 97.1 0.0025 5.5E-08 53.8 7.8 89 21-114 185-332 (509)
220 PF00071 Ras: Ras family; Int 97.1 0.0039 8.4E-08 43.8 7.7 22 51-72 2-23 (162)
221 KOG0730 AAA+-type ATPase [Post 97.1 0.0018 3.9E-08 55.4 6.7 99 47-145 467-616 (693)
222 COG1618 Predicted nucleotide k 97.1 0.00043 9.3E-09 49.6 2.6 28 48-75 5-32 (179)
223 PRK00131 aroK shikimate kinase 97.1 0.00046 1E-08 49.3 2.8 27 48-74 4-30 (175)
224 PRK00625 shikimate kinase; Pro 97.1 0.00042 9E-09 50.4 2.6 25 50-74 2-26 (173)
225 PRK06217 hypothetical protein; 97.1 0.00051 1.1E-08 50.1 3.1 33 50-83 3-35 (183)
226 cd04162 Arl9_Arfrp2_like Arl9/ 97.1 0.0023 4.9E-08 45.6 6.3 21 51-71 2-22 (164)
227 cd03263 ABC_subfamily_A The AB 97.1 0.004 8.6E-08 46.5 7.9 24 49-72 29-52 (220)
228 PRK08769 DNA polymerase III su 97.0 0.0095 2.1E-07 47.4 10.3 68 76-143 115-184 (319)
229 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00043 9.2E-09 50.2 2.4 24 50-73 1-24 (183)
230 PF01583 APS_kinase: Adenylyls 97.0 0.00061 1.3E-08 48.7 3.1 33 49-81 3-37 (156)
231 PRK04040 adenylate kinase; Pro 97.0 0.00056 1.2E-08 50.3 3.0 24 49-72 3-26 (188)
232 PRK15455 PrkA family serine pr 97.0 0.00081 1.7E-08 57.3 4.2 53 20-73 73-128 (644)
233 cd04124 RabL2 RabL2 subfamily. 97.0 0.0023 5E-08 45.3 6.0 21 51-71 3-23 (161)
234 PRK05541 adenylylsulfate kinas 97.0 0.00055 1.2E-08 49.4 2.8 27 47-73 6-32 (176)
235 cd03246 ABCC_Protease_Secretio 97.0 0.0044 9.6E-08 44.7 7.5 24 49-72 29-52 (173)
236 TIGR02322 phosphon_PhnN phosph 97.0 0.00064 1.4E-08 49.1 3.0 24 49-72 2-25 (179)
237 PRK10733 hflB ATP-dependent me 97.0 0.0033 7.1E-08 54.6 7.7 95 50-144 187-335 (644)
238 cd02021 GntK Gluconate kinase 97.0 0.00054 1.2E-08 48.1 2.5 24 50-73 1-24 (150)
239 PRK14738 gmk guanylate kinase; 97.0 0.00085 1.8E-08 50.0 3.6 26 46-71 11-36 (206)
240 PRK00889 adenylylsulfate kinas 97.0 0.00083 1.8E-08 48.4 3.5 25 48-72 4-28 (175)
241 cd00227 CPT Chloramphenicol (C 96.9 0.00066 1.4E-08 49.1 2.7 25 49-73 3-27 (175)
242 PF08433 KTI12: Chromatin asso 96.9 0.00049 1.1E-08 53.5 2.2 23 49-71 2-24 (270)
243 TIGR03263 guanyl_kin guanylate 96.9 0.00082 1.8E-08 48.5 3.2 24 49-72 2-25 (180)
244 PF12775 AAA_7: P-loop contain 96.9 0.0026 5.6E-08 49.5 6.1 34 31-72 24-57 (272)
245 COG1100 GTPase SAR1 and relate 96.9 0.0048 1E-07 45.7 7.4 27 49-75 6-32 (219)
246 cd02023 UMPK Uridine monophosp 96.9 0.0006 1.3E-08 50.2 2.5 35 50-84 1-37 (198)
247 PRK13947 shikimate kinase; Pro 96.9 0.00069 1.5E-08 48.5 2.7 26 50-75 3-28 (171)
248 PRK10820 DNA-binding transcrip 96.9 0.0059 1.3E-07 51.7 8.6 89 21-114 202-349 (520)
249 cd03230 ABC_DR_subfamily_A Thi 96.9 0.0075 1.6E-07 43.4 8.1 24 49-72 27-50 (173)
250 COG0464 SpoVK ATPases of the A 96.9 0.0066 1.4E-07 51.0 8.8 100 46-145 274-424 (494)
251 COG1136 SalX ABC-type antimicr 96.9 0.0052 1.1E-07 46.5 7.3 24 49-72 32-55 (226)
252 TIGR01650 PD_CobS cobaltochela 96.9 0.007 1.5E-07 48.2 8.4 23 50-72 66-88 (327)
253 cd03253 ABCC_ATM1_transporter 96.9 0.0083 1.8E-07 45.2 8.5 24 49-72 28-51 (236)
254 COG0563 Adk Adenylate kinase a 96.9 0.0007 1.5E-08 49.4 2.5 24 50-73 2-25 (178)
255 COG0714 MoxR-like ATPases [Gen 96.9 0.0043 9.3E-08 49.4 7.1 68 23-99 24-137 (329)
256 cd04119 RJL RJL (RabJ-Like) su 96.9 0.0064 1.4E-07 42.6 7.3 22 51-72 3-24 (168)
257 cd02025 PanK Pantothenate kina 96.9 0.00068 1.5E-08 51.1 2.3 35 50-84 1-41 (220)
258 PF00448 SRP54: SRP54-type pro 96.9 0.0016 3.6E-08 48.2 4.3 36 49-84 2-41 (196)
259 cd03244 ABCC_MRP_domain2 Domai 96.8 0.0095 2.1E-07 44.4 8.4 23 49-71 31-53 (221)
260 cd03251 ABCC_MsbA MsbA is an e 96.8 0.01 2.2E-07 44.6 8.6 24 49-72 29-52 (234)
261 PRK13975 thymidylate kinase; P 96.8 0.001 2.2E-08 48.7 3.0 26 49-74 3-28 (196)
262 cd02020 CMPK Cytidine monophos 96.8 0.00076 1.7E-08 46.8 2.2 24 50-73 1-24 (147)
263 PRK13949 shikimate kinase; Pro 96.8 0.001 2.2E-08 48.1 2.9 25 50-74 3-27 (169)
264 PRK05416 glmZ(sRNA)-inactivati 96.8 0.0057 1.2E-07 48.0 7.2 60 48-114 6-67 (288)
265 PRK09376 rho transcription ter 96.8 0.001 2.2E-08 54.3 3.1 35 48-82 169-209 (416)
266 cd04113 Rab4 Rab4 subfamily. 96.8 0.0075 1.6E-07 42.3 7.3 22 51-72 3-24 (161)
267 COG2274 SunT ABC-type bacterio 96.8 0.0047 1E-07 54.1 7.3 28 48-75 499-526 (709)
268 PRK14530 adenylate kinase; Pro 96.8 0.00087 1.9E-08 50.1 2.6 26 50-75 5-30 (215)
269 COG3640 CooC CO dehydrogenase 96.8 0.0012 2.7E-08 50.0 3.3 32 50-81 2-36 (255)
270 COG1116 TauB ABC-type nitrate/ 96.8 0.00063 1.4E-08 51.9 1.7 25 49-73 30-54 (248)
271 PLN02318 phosphoribulokinase/u 96.8 0.0034 7.3E-08 53.8 6.2 38 46-83 63-100 (656)
272 COG1428 Deoxynucleoside kinase 96.8 0.001 2.2E-08 49.6 2.8 28 48-75 4-31 (216)
273 cd04110 Rab35 Rab35 subfamily. 96.8 0.0042 9.1E-08 45.7 6.1 24 48-71 6-29 (199)
274 PRK00300 gmk guanylate kinase; 96.8 0.0011 2.4E-08 48.9 3.0 26 48-73 5-30 (205)
275 PF08477 Miro: Miro-like prote 96.8 0.0013 2.8E-08 43.9 3.1 24 51-74 2-25 (119)
276 PRK04132 replication factor C 96.8 0.011 2.4E-07 52.6 9.5 88 56-143 574-701 (846)
277 TIGR01287 nifH nitrogenase iro 96.8 0.001 2.2E-08 51.5 2.8 23 49-71 1-23 (275)
278 cd04177 RSR1 RSR1 subgroup. R 96.8 0.0044 9.6E-08 44.0 6.0 22 51-72 4-25 (168)
279 cd01131 PilT Pilus retraction 96.8 0.0064 1.4E-07 45.0 6.9 22 50-71 3-24 (198)
280 COG1222 RPT1 ATP-dependent 26S 96.8 0.0019 4.1E-08 51.8 4.2 99 46-144 183-335 (406)
281 PRK03846 adenylylsulfate kinas 96.8 0.0015 3.2E-08 48.2 3.5 26 47-72 23-48 (198)
282 TIGR01313 therm_gnt_kin carboh 96.8 0.00089 1.9E-08 47.6 2.2 32 51-83 1-32 (163)
283 cd02028 UMPK_like Uridine mono 96.8 0.00099 2.1E-08 48.6 2.5 35 50-84 1-39 (179)
284 PRK10078 ribose 1,5-bisphospho 96.8 0.0014 3.1E-08 47.8 3.4 25 50-74 4-28 (186)
285 PRK10923 glnG nitrogen regulat 96.8 0.0069 1.5E-07 50.3 7.8 87 22-113 137-282 (469)
286 PRK13531 regulatory ATPase Rav 96.8 0.0015 3.3E-08 54.6 3.8 113 22-143 19-193 (498)
287 TIGR01818 ntrC nitrogen regula 96.8 0.019 4.2E-07 47.5 10.4 112 23-140 134-318 (463)
288 cd00464 SK Shikimate kinase (S 96.8 0.0012 2.5E-08 46.3 2.7 24 51-74 2-25 (154)
289 PRK10751 molybdopterin-guanine 96.8 0.0017 3.7E-08 47.2 3.6 27 47-73 5-31 (173)
290 PRK11388 DNA-binding transcrip 96.8 0.0055 1.2E-07 53.1 7.3 74 22-100 324-442 (638)
291 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0087 1.9E-07 42.3 7.2 72 49-120 26-146 (157)
292 COG1102 Cmk Cytidylate kinase 96.7 0.001 2.2E-08 47.7 2.3 26 50-75 2-27 (179)
293 cd04121 Rab40 Rab40 subfamily. 96.7 0.0048 1E-07 45.3 6.0 24 48-71 6-29 (189)
294 COG1121 ZnuC ABC-type Mn/Zn tr 96.7 0.0052 1.1E-07 47.3 6.3 22 49-70 31-52 (254)
295 cd01128 rho_factor Transcripti 96.7 0.0014 3E-08 50.4 3.2 27 48-74 16-42 (249)
296 PLN03071 GTP-binding nuclear p 96.7 0.0047 1E-07 46.3 6.0 24 48-71 13-36 (219)
297 COG2842 Uncharacterized ATPase 96.7 0.008 1.7E-07 47.0 7.4 94 4-102 53-193 (297)
298 KOG2170 ATPase of the AAA+ sup 96.7 0.01 2.3E-07 46.6 7.9 102 44-145 106-265 (344)
299 TIGR03375 type_I_sec_LssB type 96.7 0.0075 1.6E-07 52.7 8.0 25 49-73 492-516 (694)
300 COG0542 clpA ATP-binding subun 96.7 0.0074 1.6E-07 53.1 7.7 113 22-142 169-344 (786)
301 TIGR03522 GldA_ABC_ATP gliding 96.7 0.012 2.6E-07 46.3 8.3 24 49-72 29-52 (301)
302 PRK12339 2-phosphoglycerate ki 96.7 0.0016 3.5E-08 48.3 3.2 27 48-74 3-29 (197)
303 PRK13236 nitrogenase reductase 96.7 0.0018 3.9E-08 50.9 3.6 25 46-70 4-28 (296)
304 PRK13230 nitrogenase reductase 96.7 0.0015 3.3E-08 50.7 3.2 24 49-72 2-25 (279)
305 cd02117 NifH_like This family 96.7 0.0013 2.9E-08 49.0 2.7 23 49-71 1-23 (212)
306 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.7 0.0061 1.3E-07 43.1 6.1 23 50-72 4-26 (166)
307 TIGR01188 drrA daunorubicin re 96.7 0.012 2.7E-07 46.3 8.3 24 49-72 20-43 (302)
308 PRK15115 response regulator Gl 96.7 0.012 2.6E-07 48.5 8.6 65 50-114 159-279 (444)
309 COG0194 Gmk Guanylate kinase [ 96.7 0.032 7E-07 40.9 9.7 90 48-143 4-135 (191)
310 PF03205 MobB: Molybdopterin g 96.7 0.0017 3.7E-08 45.5 3.0 34 49-82 1-37 (140)
311 cd04118 Rab24 Rab24 subfamily. 96.7 0.0064 1.4E-07 44.2 6.3 21 51-71 3-23 (193)
312 PRK13657 cyclic beta-1,2-gluca 96.7 0.0076 1.6E-07 51.6 7.6 25 49-73 362-386 (588)
313 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0079 1.7E-07 43.1 6.5 40 76-115 97-139 (159)
314 PRK14527 adenylate kinase; Pro 96.7 0.0017 3.7E-08 47.6 3.1 26 48-73 6-31 (191)
315 cd02027 APSK Adenosine 5'-phos 96.6 0.0014 3E-08 46.3 2.4 23 50-72 1-23 (149)
316 cd03243 ABC_MutS_homologs The 96.6 0.0091 2E-07 44.1 6.9 21 49-69 30-50 (202)
317 cd00071 GMPK Guanosine monopho 96.6 0.0016 3.4E-08 45.4 2.6 22 51-72 2-23 (137)
318 cd00877 Ran Ran (Ras-related n 96.6 0.0067 1.4E-07 43.2 5.9 21 50-70 2-22 (166)
319 TIGR02329 propionate_PrpR prop 96.6 0.0063 1.4E-07 51.6 6.6 86 23-113 212-357 (526)
320 cd04138 H_N_K_Ras_like H-Ras/N 96.6 0.011 2.3E-07 41.2 6.9 23 50-72 3-25 (162)
321 PRK14532 adenylate kinase; Pro 96.6 0.0017 3.7E-08 47.3 2.8 23 51-73 3-25 (188)
322 TIGR00554 panK_bact pantothena 96.6 0.0034 7.3E-08 49.3 4.6 24 46-69 60-83 (290)
323 PRK04182 cytidylate kinase; Pr 96.6 0.0019 4.2E-08 46.3 3.1 25 50-74 2-26 (180)
324 PRK13946 shikimate kinase; Pro 96.6 0.0016 3.4E-08 47.6 2.6 27 48-74 10-36 (184)
325 PRK05057 aroK shikimate kinase 96.6 0.0017 3.7E-08 47.0 2.7 25 49-73 5-29 (172)
326 PF03029 ATP_bind_1: Conserved 96.6 0.0015 3.2E-08 49.9 2.5 31 53-83 1-35 (238)
327 PF10662 PduV-EutP: Ethanolami 96.6 0.0035 7.7E-08 44.1 4.2 24 49-72 2-25 (143)
328 KOG0734 AAA+-type ATPase conta 96.6 0.0036 7.8E-08 52.8 4.9 53 23-75 304-364 (752)
329 COG1419 FlhF Flagellar GTP-bin 96.6 0.0078 1.7E-07 49.1 6.7 22 48-69 203-225 (407)
330 COG0529 CysC Adenylylsulfate k 96.6 0.0025 5.4E-08 46.4 3.5 35 47-81 22-58 (197)
331 PF00025 Arf: ADP-ribosylation 96.6 0.02 4.3E-07 41.3 8.3 26 47-72 13-38 (175)
332 PRK13948 shikimate kinase; Pro 96.6 0.0021 4.5E-08 47.1 3.1 29 47-75 9-37 (182)
333 PRK14737 gmk guanylate kinase; 96.6 0.0027 5.8E-08 46.6 3.7 26 47-72 3-28 (186)
334 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0013 2.9E-08 50.2 2.2 22 51-72 2-23 (249)
335 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0033 7.1E-08 43.8 3.9 25 49-73 23-47 (133)
336 TIGR02868 CydC thiol reductant 96.6 0.0093 2E-07 50.4 7.4 26 48-73 361-386 (529)
337 smart00175 RAB Rab subfamily o 96.6 0.015 3.2E-07 40.7 7.4 22 51-72 3-24 (164)
338 PF01078 Mg_chelatase: Magnesi 96.6 0.0081 1.8E-07 44.8 6.2 52 49-100 23-132 (206)
339 PHA02624 large T antigen; Prov 96.6 0.007 1.5E-07 51.9 6.5 49 31-84 419-488 (647)
340 cd02040 NifH NifH gene encodes 96.6 0.002 4.4E-08 49.4 3.1 24 49-72 2-25 (270)
341 KOG2228 Origin recognition com 96.6 0.014 2.9E-07 46.8 7.6 69 76-144 139-219 (408)
342 PHA02530 pseT polynucleotide k 96.6 0.0021 4.6E-08 50.2 3.2 24 49-72 3-26 (300)
343 cd01428 ADK Adenylate kinase ( 96.6 0.0019 4.1E-08 47.1 2.7 23 51-73 2-24 (194)
344 PRK05439 pantothenate kinase; 96.6 0.0041 8.9E-08 49.3 4.8 40 45-84 83-128 (311)
345 TIGR02857 CydD thiol reductant 96.6 0.012 2.6E-07 49.7 8.0 26 48-73 348-373 (529)
346 PRK11174 cysteine/glutathione 96.6 0.01 2.2E-07 50.8 7.6 25 48-72 376-400 (588)
347 PF14516 AAA_35: AAA-like doma 96.6 0.028 6.2E-07 44.9 9.6 48 18-73 6-56 (331)
348 COG1936 Predicted nucleotide k 96.5 0.0018 4E-08 46.8 2.5 20 50-69 2-21 (180)
349 PLN02200 adenylate kinase fami 96.5 0.0023 5E-08 48.7 3.2 28 47-74 42-69 (234)
350 TIGR01192 chvA glucan exporter 96.5 0.013 2.8E-07 50.3 8.0 25 48-72 361-385 (585)
351 KOG0927 Predicted transporter 96.5 0.011 2.3E-07 50.0 7.1 25 49-73 102-126 (614)
352 PRK07429 phosphoribulokinase; 96.5 0.0048 1E-07 49.3 5.0 39 46-84 6-46 (327)
353 cd00154 Rab Rab family. Rab G 96.5 0.019 4.2E-07 39.4 7.5 22 51-72 3-24 (159)
354 cd01672 TMPK Thymidine monopho 96.5 0.0022 4.7E-08 46.6 2.7 23 50-72 2-24 (200)
355 TIGR00382 clpX endopeptidase C 96.5 0.01 2.2E-07 48.8 6.9 24 49-72 117-140 (413)
356 smart00173 RAS Ras subfamily o 96.5 0.012 2.6E-07 41.3 6.5 23 50-72 2-24 (164)
357 cd03281 ABC_MSH5_euk MutS5 hom 96.5 0.011 2.4E-07 44.3 6.6 22 48-69 29-50 (213)
358 cd02026 PRK Phosphoribulokinas 96.5 0.003 6.5E-08 49.2 3.6 35 50-84 1-37 (273)
359 cd03300 ABC_PotA_N PotA is an 96.5 0.014 2.9E-07 44.1 7.1 25 49-73 27-51 (232)
360 PRK08356 hypothetical protein; 96.5 0.0031 6.7E-08 46.4 3.5 22 48-69 5-26 (195)
361 cd04123 Rab21 Rab21 subfamily. 96.5 0.018 3.8E-07 40.1 7.2 22 51-72 3-24 (162)
362 PF10443 RNA12: RNA12 protein; 96.5 0.043 9.3E-07 45.2 10.2 68 76-144 150-229 (431)
363 TIGR01193 bacteriocin_ABC ABC- 96.5 0.012 2.7E-07 51.5 7.7 25 49-73 501-525 (708)
364 COG1120 FepC ABC-type cobalami 96.5 0.013 2.8E-07 45.3 6.9 27 48-74 28-54 (258)
365 PF13521 AAA_28: AAA domain; P 96.5 0.0019 4.1E-08 46.0 2.2 21 51-71 2-22 (163)
366 TIGR02173 cyt_kin_arch cytidyl 96.5 0.0026 5.7E-08 45.3 2.9 24 50-73 2-25 (171)
367 TIGR01846 type_I_sec_HlyB type 96.5 0.014 3.1E-07 51.0 8.0 25 49-73 484-508 (694)
368 PRK14531 adenylate kinase; Pro 96.5 0.0024 5.3E-08 46.5 2.8 25 50-74 4-28 (183)
369 PRK10789 putative multidrug tr 96.5 0.015 3.3E-07 49.7 8.0 25 48-72 341-365 (569)
370 KOG0735 AAA+-type ATPase [Post 96.5 0.0029 6.2E-08 54.9 3.5 27 49-75 432-458 (952)
371 PRK03731 aroL shikimate kinase 96.4 0.0023 4.9E-08 45.9 2.5 25 50-74 4-28 (171)
372 cd00876 Ras Ras family. The R 96.4 0.019 4.2E-07 39.8 7.3 21 51-71 2-22 (160)
373 PRK11176 lipid transporter ATP 96.4 0.013 2.8E-07 50.1 7.5 25 49-73 370-394 (582)
374 PRK13537 nodulation ABC transp 96.4 0.022 4.8E-07 44.9 8.3 25 49-73 34-58 (306)
375 cd04106 Rab23_lke Rab23-like s 96.4 0.011 2.3E-07 41.5 5.9 21 51-71 3-23 (162)
376 cd01852 AIG1 AIG1 (avrRpt2-ind 96.4 0.0079 1.7E-07 44.1 5.5 23 50-72 2-24 (196)
377 TIGR01281 DPOR_bchL light-inde 96.4 0.0028 6E-08 48.9 3.1 21 50-70 2-22 (268)
378 cd04131 Rnd Rnd subfamily. Th 96.4 0.012 2.7E-07 42.5 6.4 22 50-71 3-24 (178)
379 TIGR00073 hypB hydrogenase acc 96.4 0.0029 6.4E-08 47.0 3.2 26 46-71 20-45 (207)
380 COG3854 SpoIIIAA ncharacterize 96.4 0.025 5.5E-07 43.2 8.1 40 26-72 117-161 (308)
381 cd04159 Arl10_like Arl10-like 96.4 0.018 3.9E-07 39.6 7.0 21 51-71 2-22 (159)
382 PRK15424 propionate catabolism 96.4 0.01 2.2E-07 50.5 6.6 73 23-100 219-348 (538)
383 cd01864 Rab19 Rab19 subfamily. 96.4 0.029 6.4E-07 39.5 8.2 23 49-71 4-26 (165)
384 cd01918 HprK_C HprK/P, the bif 96.4 0.0034 7.5E-08 44.5 3.2 33 49-84 15-47 (149)
385 TIGR02768 TraA_Ti Ti-type conj 96.4 0.011 2.4E-07 52.2 7.0 61 49-111 369-474 (744)
386 TIGR02203 MsbA_lipidA lipid A 96.4 0.013 2.8E-07 49.9 7.3 25 49-73 359-383 (571)
387 PRK13232 nifH nitrogenase redu 96.4 0.0025 5.3E-08 49.4 2.7 24 49-72 2-25 (273)
388 smart00174 RHO Rho (Ras homolo 96.4 0.023 4.9E-07 40.3 7.6 22 51-72 1-22 (174)
389 COG1124 DppF ABC-type dipeptid 96.4 0.003 6.5E-08 48.1 3.0 25 49-73 34-58 (252)
390 PLN02796 D-glycerate 3-kinase 96.4 0.0053 1.1E-07 49.3 4.5 38 47-84 99-140 (347)
391 PRK09825 idnK D-gluconate kina 96.4 0.0031 6.8E-08 45.8 3.0 26 49-74 4-29 (176)
392 PRK05537 bifunctional sulfate 96.4 0.005 1.1E-07 52.7 4.6 48 23-74 369-418 (568)
393 cd01862 Rab7 Rab7 subfamily. 96.4 0.0032 6.9E-08 44.6 3.0 23 50-72 2-24 (172)
394 PRK13536 nodulation factor exp 96.4 0.025 5.5E-07 45.4 8.4 24 49-72 68-91 (340)
395 PTZ00088 adenylate kinase 1; P 96.4 0.0026 5.7E-08 48.3 2.6 24 50-73 8-31 (229)
396 cd04163 Era Era subfamily. Er 96.4 0.0043 9.4E-08 43.1 3.6 25 48-72 3-27 (168)
397 cd00820 PEPCK_HprK Phosphoenol 96.4 0.0037 8.1E-08 41.8 3.0 33 49-84 16-48 (107)
398 cd04155 Arl3 Arl3 subfamily. 96.4 0.0056 1.2E-07 43.5 4.2 24 48-71 14-37 (173)
399 cd04114 Rab30 Rab30 subfamily. 96.4 0.028 6.1E-07 39.6 7.8 22 48-69 7-28 (169)
400 TIGR00041 DTMP_kinase thymidyl 96.4 0.0032 7E-08 46.0 2.9 26 49-74 4-29 (195)
401 TIGR00231 small_GTP small GTP- 96.3 0.0036 7.9E-08 42.8 3.0 24 50-73 3-26 (161)
402 cd01892 Miro2 Miro2 subfamily. 96.3 0.026 5.7E-07 40.3 7.6 27 47-73 3-29 (169)
403 PTZ00369 Ras-like protein; Pro 96.3 0.017 3.8E-07 41.9 6.8 23 50-72 7-29 (189)
404 PRK06761 hypothetical protein; 96.3 0.0033 7.3E-08 49.1 3.1 27 49-75 4-30 (282)
405 PRK11160 cysteine/glutathione 96.3 0.018 4E-07 49.2 7.9 26 48-73 366-391 (574)
406 TIGR01351 adk adenylate kinase 96.3 0.0031 6.7E-08 46.9 2.8 23 51-73 2-24 (210)
407 COG2019 AdkA Archaeal adenylat 96.3 0.0037 8.1E-08 45.1 3.0 25 48-72 4-28 (189)
408 TIGR02314 ABC_MetN D-methionin 96.3 0.019 4.1E-07 46.2 7.4 25 49-73 32-56 (343)
409 PLN02348 phosphoribulokinase 96.3 0.0053 1.1E-07 50.1 4.2 39 46-84 47-104 (395)
410 PF00005 ABC_tran: ABC transpo 96.3 0.0037 8E-08 42.9 2.9 26 49-74 12-37 (137)
411 PF04548 AIG1: AIG1 family; I 96.3 0.0095 2.1E-07 44.5 5.3 24 50-73 2-25 (212)
412 PRK02496 adk adenylate kinase; 96.3 0.0037 7.9E-08 45.4 3.0 24 50-73 3-26 (184)
413 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 96.3 0.02 4.4E-07 41.6 7.0 23 50-72 7-29 (182)
414 cd04175 Rap1 Rap1 subgroup. T 96.3 0.017 3.7E-07 40.6 6.4 22 50-71 3-24 (164)
415 cd04120 Rab12 Rab12 subfamily. 96.3 0.022 4.9E-07 42.2 7.3 21 51-71 3-23 (202)
416 PF03266 NTPase_1: NTPase; In 96.3 0.0033 7.1E-08 45.5 2.7 22 51-72 2-23 (168)
417 PRK13231 nitrogenase reductase 96.3 0.0074 1.6E-07 46.4 4.8 24 49-72 3-26 (264)
418 PRK00279 adk adenylate kinase; 96.3 0.0032 6.9E-08 47.0 2.7 24 50-73 2-25 (215)
419 PRK13235 nifH nitrogenase redu 96.3 0.0032 6.9E-08 48.8 2.8 23 49-71 2-24 (274)
420 cd02032 Bchl_like This family 96.3 0.0032 7E-08 48.5 2.7 23 50-72 2-24 (267)
421 cd04137 RheB Rheb (Ras Homolog 96.3 0.028 6.2E-07 40.2 7.5 23 50-72 3-25 (180)
422 PRK08099 bifunctional DNA-bind 96.3 0.0034 7.4E-08 51.4 2.9 28 47-74 218-245 (399)
423 PRK00698 tmk thymidylate kinas 96.3 0.0042 9.2E-08 45.6 3.1 23 49-71 4-26 (205)
424 PRK09435 membrane ATPase/prote 96.3 0.0069 1.5E-07 48.5 4.5 38 46-83 54-95 (332)
425 cd04136 Rap_like Rap-like subf 96.3 0.02 4.3E-07 40.0 6.5 22 50-71 3-24 (163)
426 cd01983 Fer4_NifH The Fer4_Nif 96.3 0.0036 7.8E-08 39.7 2.4 24 50-73 1-24 (99)
427 cd01860 Rab5_related Rab5-rela 96.2 0.03 6.5E-07 39.2 7.4 23 50-72 3-25 (163)
428 TIGR01425 SRP54_euk signal rec 96.2 0.0078 1.7E-07 49.7 4.9 47 47-95 99-148 (429)
429 TIGR03796 NHPM_micro_ABC1 NHPM 96.2 0.02 4.4E-07 50.1 7.7 25 49-73 506-530 (710)
430 PF01926 MMR_HSR1: 50S ribosom 96.2 0.0048 1.1E-07 41.2 3.1 21 51-71 2-22 (116)
431 PRK13185 chlL protochlorophyll 96.2 0.0045 9.8E-08 47.7 3.3 23 49-71 3-25 (270)
432 TIGR00767 rho transcription te 96.2 0.0054 1.2E-07 50.2 3.8 35 48-82 168-208 (415)
433 COG0703 AroK Shikimate kinase 96.2 0.0037 7.9E-08 45.3 2.5 27 49-75 3-29 (172)
434 TIGR00368 Mg chelatase-related 96.2 0.018 3.8E-07 48.6 6.9 40 23-70 192-233 (499)
435 cd01120 RecA-like_NTPases RecA 96.2 0.0034 7.3E-08 43.8 2.3 22 51-72 2-23 (165)
436 cd01865 Rab3 Rab3 subfamily. 96.2 0.034 7.3E-07 39.3 7.5 23 50-72 3-25 (165)
437 PRK01184 hypothetical protein; 96.2 0.0043 9.3E-08 45.0 2.9 23 49-72 2-24 (184)
438 TIGR03797 NHPM_micro_ABC2 NHPM 96.2 0.021 4.6E-07 49.8 7.7 25 49-73 480-504 (686)
439 TIGR00176 mobB molybdopterin-g 96.2 0.0037 7.9E-08 44.6 2.5 24 50-73 1-24 (155)
440 TIGR03575 selen_PSTK_euk L-ser 96.2 0.0057 1.2E-07 49.1 3.8 47 51-97 2-63 (340)
441 PRK11889 flhF flagellar biosyn 96.2 0.0084 1.8E-07 49.2 4.7 26 47-72 240-265 (436)
442 PF00625 Guanylate_kin: Guanyl 96.2 0.0042 9.2E-08 45.2 2.8 28 48-75 2-29 (183)
443 TIGR03499 FlhF flagellar biosy 96.2 0.0051 1.1E-07 48.1 3.4 25 47-71 193-217 (282)
444 TIGR02915 PEP_resp_reg putativ 96.2 0.025 5.5E-07 46.6 7.7 87 23-114 139-284 (445)
445 KOG0073 GTP-binding ADP-ribosy 96.2 0.0028 6.1E-08 45.5 1.7 26 49-74 17-42 (185)
446 cd01874 Cdc42 Cdc42 subfamily. 96.2 0.023 4.9E-07 40.9 6.5 23 50-72 3-25 (175)
447 PRK14528 adenylate kinase; Pro 96.2 0.0045 9.7E-08 45.3 2.8 25 49-73 2-26 (186)
448 COG1126 GlnQ ABC-type polar am 96.2 0.0048 1.1E-07 46.4 2.9 27 49-75 29-55 (240)
449 PRK13768 GTPase; Provisional 96.2 0.0052 1.1E-07 47.2 3.2 24 49-72 3-26 (253)
450 cd02022 DPCK Dephospho-coenzym 96.1 0.004 8.6E-08 45.2 2.5 21 50-70 1-21 (179)
451 TIGR01618 phage_P_loop phage n 96.1 0.0061 1.3E-07 46.0 3.5 23 48-70 12-34 (220)
452 PF05707 Zot: Zonular occluden 96.1 0.018 3.9E-07 42.3 6.0 19 50-68 2-20 (193)
453 cd03282 ABC_MSH4_euk MutS4 hom 96.1 0.024 5.3E-07 42.2 6.7 73 48-122 29-159 (204)
454 cd04141 Rit_Rin_Ric Rit/Rin/Ri 96.1 0.032 7E-07 40.0 7.2 22 50-71 4-25 (172)
455 cd04122 Rab14 Rab14 subfamily. 96.1 0.036 7.8E-07 39.1 7.4 22 50-71 4-25 (166)
456 TIGR02204 MsbA_rel ABC transpo 96.1 0.024 5.1E-07 48.4 7.5 25 49-73 367-391 (576)
457 TIGR00064 ftsY signal recognit 96.1 0.0064 1.4E-07 47.3 3.7 27 46-72 70-96 (272)
458 PRK14721 flhF flagellar biosyn 96.1 0.017 3.6E-07 47.7 6.2 24 47-70 190-213 (420)
459 PRK15453 phosphoribulokinase; 96.1 0.0056 1.2E-07 47.9 3.3 38 47-84 4-45 (290)
460 cd03225 ABC_cobalt_CbiO_domain 96.1 0.0052 1.1E-07 45.5 3.0 25 49-73 28-52 (211)
461 cd04145 M_R_Ras_like M-Ras/R-R 96.1 0.029 6.3E-07 39.2 6.8 22 50-71 4-25 (164)
462 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.1 0.0052 1.1E-07 45.8 3.0 26 49-74 31-56 (218)
463 PF03308 ArgK: ArgK protein; 96.1 0.0087 1.9E-07 46.2 4.2 37 31-72 17-53 (266)
464 PRK11432 fbpC ferric transport 96.1 0.028 6.1E-07 45.3 7.4 25 49-73 33-57 (351)
465 PF00406 ADK: Adenylate kinase 96.1 0.0037 8E-08 44.0 2.1 22 53-74 1-22 (151)
466 cd02034 CooC The accessory pro 96.1 0.0054 1.2E-07 41.6 2.8 31 51-81 2-34 (116)
467 TIGR00455 apsK adenylylsulfate 96.1 0.0064 1.4E-07 44.2 3.4 25 48-72 18-42 (184)
468 PRK11361 acetoacetate metaboli 96.1 0.037 8.1E-07 45.7 8.2 64 50-113 168-287 (457)
469 TIGR00101 ureG urease accessor 96.1 0.012 2.5E-07 43.7 4.7 35 50-84 3-39 (199)
470 PLN02165 adenylate isopentenyl 96.1 0.0052 1.1E-07 49.1 3.0 26 48-73 43-68 (334)
471 TIGR00960 3a0501s02 Type II (G 96.1 0.0055 1.2E-07 45.6 3.0 25 49-73 30-54 (216)
472 COG0237 CoaE Dephospho-CoA kin 96.1 0.0059 1.3E-07 45.5 3.1 23 48-70 2-24 (201)
473 cd01867 Rab8_Rab10_Rab13_like 96.1 0.039 8.4E-07 39.0 7.3 24 49-72 4-27 (167)
474 PLN03046 D-glycerate 3-kinase; 96.1 0.011 2.3E-07 48.9 4.7 38 47-84 211-252 (460)
475 TIGR02788 VirB11 P-type DNA tr 96.1 0.046 9.9E-07 43.2 8.3 25 49-73 145-169 (308)
476 PRK08154 anaerobic benzoate ca 96.1 0.0075 1.6E-07 47.7 3.9 30 47-76 132-161 (309)
477 TIGR00958 3a01208 Conjugate Tr 96.1 0.029 6.3E-07 49.3 7.8 26 48-73 507-532 (711)
478 PRK14493 putative bifunctional 96.1 0.0039 8.5E-08 48.6 2.2 26 49-74 2-27 (274)
479 TIGR01166 cbiO cobalt transpor 96.1 0.0069 1.5E-07 44.2 3.4 26 49-74 19-44 (190)
480 TIGR02528 EutP ethanolamine ut 96.0 0.0056 1.2E-07 42.1 2.7 23 50-72 2-24 (142)
481 smart00072 GuKc Guanylate kina 96.0 0.0064 1.4E-07 44.3 3.2 25 49-73 3-27 (184)
482 PF13245 AAA_19: Part of AAA d 96.0 0.0068 1.5E-07 38.0 2.8 19 49-67 11-29 (76)
483 TIGR01842 type_I_sec_PrtD type 96.0 0.032 6.9E-07 47.4 7.7 26 48-73 344-369 (544)
484 cd01673 dNK Deoxyribonucleosid 96.0 0.0045 9.8E-08 45.2 2.3 23 50-72 1-23 (193)
485 cd03297 ABC_ModC_molybdenum_tr 96.0 0.0069 1.5E-07 45.0 3.3 25 49-73 24-48 (214)
486 cd03116 MobB Molybdenum is an 96.0 0.0069 1.5E-07 43.4 3.1 25 49-73 2-26 (159)
487 PF02374 ArsA_ATPase: Anion-tr 96.0 0.0055 1.2E-07 48.5 2.8 21 49-69 2-22 (305)
488 CHL00081 chlI Mg-protoporyphyr 96.0 0.0063 1.4E-07 49.0 3.2 41 22-69 16-59 (350)
489 cd00879 Sar1 Sar1 subfamily. 96.0 0.0065 1.4E-07 44.0 3.1 24 48-71 19-42 (190)
490 cd00878 Arf_Arl Arf (ADP-ribos 96.0 0.0064 1.4E-07 42.5 2.9 22 51-72 2-23 (158)
491 PRK12338 hypothetical protein; 96.0 0.0074 1.6E-07 48.0 3.5 28 48-75 4-31 (319)
492 cd04135 Tc10 TC10 subfamily. 96.0 0.021 4.6E-07 40.5 5.7 22 51-72 3-24 (174)
493 PRK10416 signal recognition pa 96.0 0.0078 1.7E-07 47.9 3.7 27 47-73 113-139 (318)
494 cd04101 RabL4 RabL4 (Rab-like4 96.0 0.05 1.1E-06 38.1 7.5 20 51-70 3-22 (164)
495 PF06309 Torsin: Torsin; Inte 96.0 0.015 3.2E-07 40.1 4.5 45 23-71 25-76 (127)
496 cd03115 SRP The signal recogni 96.0 0.0069 1.5E-07 43.5 3.1 23 50-72 2-24 (173)
497 cd01130 VirB11-like_ATPase Typ 96.0 0.0099 2.1E-07 43.4 4.0 25 49-73 26-50 (186)
498 PRK00771 signal recognition pa 96.0 0.012 2.6E-07 48.9 4.8 27 47-73 94-120 (437)
499 COG1703 ArgK Putative periplas 96.0 0.0094 2E-07 46.8 3.9 39 31-74 39-77 (323)
500 COG3903 Predicted ATPase [Gene 96.0 0.00079 1.7E-08 54.7 -2.1 93 47-144 13-155 (414)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.90 E-value=4e-24 Score=186.59 Aligned_cols=114 Identities=32% Similarity=0.504 Sum_probs=105.5
Q ss_pred eeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC-ce--------------------------
Q 039127 26 LGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT-VN-------------------------- 75 (162)
Q Consensus 26 vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~-------------------------- 75 (162)
||.+. .+.+.|..++ ..+++|+||||+||||||+.++|+.. +.
T Consensus 161 VG~e~~~~kl~~~L~~d~-------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD-------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCC-------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence 99999 8888888877 38999999999999999999999987 44
Q ss_pred -----------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChhhHhh-hCCCCe
Q 039127 76 -----------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQGVASI-MGTMPA 125 (162)
Q Consensus 76 -----------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~~-~~~~~~ 125 (162)
|++|||||| +...|+.+..++|...+||+|++|||+..|+.. +++...
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW--~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIW--EEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYP 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccc--ccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcc
Confidence 999999999 888899999999998889999999999999998 777778
Q ss_pred eeCCCCCHHHHHHHHhhCCCCCC
Q 039127 126 YELKKLVNDNCLLIFSQHPSGTR 148 (162)
Q Consensus 126 ~~l~~L~~~~~~~lf~~~af~~~ 148 (162)
+++++|+.++||.||++.||...
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~ 334 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNT 334 (889)
T ss_pred ccccccCccccHHHHHHhhcccc
Confidence 99999999999999999998763
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2e-23 Score=187.71 Aligned_cols=126 Identities=18% Similarity=0.174 Sum_probs=103.4
Q ss_pred CCCCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc---------------------
Q 039127 19 VPSVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV--------------------- 74 (162)
Q Consensus 19 ~~~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--------------------- 74 (162)
+.+...+|||+. ++..+|... ..+.++++||||||+||||||+++|++...
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~-----~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLE-----SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccc-----cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcc
Confidence 345578999999 554444322 246899999999999999999999654210
Q ss_pred ------------------------------------------eEEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecC
Q 039127 75 ------------------------------------------NFNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTR 112 (162)
Q Consensus 75 ------------------------------------------~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR 112 (162)
++|+||||+| +..+|+.+.....+.++||+||||||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~--~~~~l~~L~~~~~~~~~GsrIIiTTr 332 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLD--DQDVLDALAGQTQWFGSGSRIIVITK 332 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCC--CHHHHHHHHhhCccCCCCcEEEEEeC
Confidence 0799999999 88999999877766788999999999
Q ss_pred ChhhHhhhCCCCeeeCCCCCHHHHHHHHhhCCCCCCCCC
Q 039127 113 NQGVASIMGTMPAYELKKLVNDNCLLIFSQHPSGTREIV 151 (162)
Q Consensus 113 ~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~af~~~~~~ 151 (162)
+..++..++..+.|+++.|+.++||+||+++||+...+.
T Consensus 333 d~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~ 371 (1153)
T PLN03210 333 DKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP 371 (1153)
T ss_pred cHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc
Confidence 999998777778999999999999999999999876543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.89 E-value=5.9e-24 Score=164.90 Aligned_cols=111 Identities=31% Similarity=0.477 Sum_probs=85.8
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC--ce---------------------------------
Q 039127 31 GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT--VN--------------------------------- 75 (162)
Q Consensus 31 ~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~--~~--------------------------------- 75 (162)
+|.+.|.... .+.++|+|+||||+||||||..++++.. ..
T Consensus 7 ~l~~~L~~~~-----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 81 (287)
T PF00931_consen 7 KLKDWLLDNS-----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI 81 (287)
T ss_dssp HHHHHHHTTT-----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS
T ss_pred HHHHHhhCCC-----CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 6778887743 4689999999999999999999998832 22
Q ss_pred ---------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChhhHhhhCC-CCeeeCCCCCH
Q 039127 76 ---------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQGVASIMGT-MPAYELKKLVN 133 (162)
Q Consensus 76 ---------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~~~~~-~~~~~l~~L~~ 133 (162)
||+||||+| +...|+.+...++....||+||+|||+..++..++. ...+++++|+.
T Consensus 82 ~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 82 SDPKDIEELQDQLRELLKDKRCLLVLDDVW--DEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SCCSSHHHHHHHHHHHHCCTSEEEEEEEE---SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccchhhhccccceeeeeeec--cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999 888999998888877789999999999998876654 56899999999
Q ss_pred HHHHHHHhhCCCCCC
Q 039127 134 DNCLLIFSQHPSGTR 148 (162)
Q Consensus 134 ~~~~~lf~~~af~~~ 148 (162)
++|++||++.++...
T Consensus 160 ~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 160 EEALELFKKRAGRKE 174 (287)
T ss_dssp HHHHHHHHHHHTSHS
T ss_pred ccccccccccccccc
Confidence 999999999988665
No 4
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.29 E-value=1.6e-11 Score=98.04 Aligned_cols=113 Identities=16% Similarity=0.245 Sum_probs=87.3
Q ss_pred CCCceeeehH-----HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce--------------------
Q 039127 21 SVKLWLGREE-----GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN-------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~-----~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------- 75 (162)
+..+++|.+. .++..++... .+....+||++|+||||||+.+.......
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~~------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEAG------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhcC------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHH
Confidence 4578889888 5566655544 47778899999999999999998765543
Q ss_pred ----------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE--ecCChhhH---hhhCCCCeeeCCCCCHHHHHHHH
Q 039127 76 ----------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV--TTRNQGVA---SIMGTMPAYELKKLVNDNCLLIF 140 (162)
Q Consensus 76 ----------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--TTR~~~v~---~~~~~~~~~~l~~L~~~~~~~lf 140 (162)
.+|.+|.|+..+..+.+.|++.+ ..|.-++| ||.|+... ...+...++.+++|+.++-..++
T Consensus 96 a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l 172 (436)
T COG2256 96 ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLL 172 (436)
T ss_pred HHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHH
Confidence 78999999988888888876554 45776666 77776542 33445568999999999999999
Q ss_pred hh
Q 039127 141 SQ 142 (162)
Q Consensus 141 ~~ 142 (162)
.+
T Consensus 173 ~r 174 (436)
T COG2256 173 KR 174 (436)
T ss_pred HH
Confidence 87
No 5
>PF05729 NACHT: NACHT domain
Probab=99.26 E-value=3.5e-11 Score=85.54 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=68.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce-----------------------------------------------------
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN----------------------------------------------------- 75 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------------------------------------- 75 (162)
+++.|+|.+|+|||++++.++......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 478899999999999999887543322
Q ss_pred --EEEEEeCCCCCChh-------hHHHHH-hhccc-cCCCcEEEEecCChhh---HhhhCCCCeeeCCCCCHHHHHHHHh
Q 039127 76 --FNFALDDTWKEKYV-------DWTNMR-DLFAA-VASRSKVIVTTRNQGV---ASIMGTMPAYELKKLVNDNCLLIFS 141 (162)
Q Consensus 76 --~LlVlDdv~~~~~~-------~~~~l~-~~l~~-~~~gs~iiiTTR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~ 141 (162)
+++|+|++++.... .+..+. ..+.. ..++.++++|+|.... .........+++.+|++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 89999999853221 122322 33332 3568899999999766 3334444579999999999999998
Q ss_pred hC
Q 039127 142 QH 143 (162)
Q Consensus 142 ~~ 143 (162)
+.
T Consensus 161 ~~ 162 (166)
T PF05729_consen 161 KY 162 (166)
T ss_pred HH
Confidence 75
No 6
>PRK06893 DNA replication initiation factor; Validated
Probab=99.23 E-value=3.1e-11 Score=91.42 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=78.9
Q ss_pred CCceeeehH-HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC-----Cce--------------------
Q 039127 22 VKLWLGREE-GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK-----TVN-------------------- 75 (162)
Q Consensus 22 ~~~~vGr~~-~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~-----~~~-------------------- 75 (162)
-.+|+|-+. ..+..+.... .....+.+.++|.+|+|||+|++.+++.. ...
T Consensus 15 fd~f~~~~~~~~~~~~~~~~---~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 91 (229)
T PRK06893 15 LDNFYADNNLLLLDSLRKNF---IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQ 91 (229)
T ss_pred ccccccCChHHHHHHHHHHh---hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhccc
Confidence 356665445 3333333211 01223568899999999999999998653 111
Q ss_pred -EEEEEeCCCCCC-hhhHH-HHHhhcccc-CCCcEEEE-ecCC---------hhhHhhhCCCCeeeCCCCCHHHHHHHHh
Q 039127 76 -FNFALDDTWKEK-YVDWT-NMRDLFAAV-ASRSKVIV-TTRN---------QGVASIMGTMPAYELKKLVNDNCLLIFS 141 (162)
Q Consensus 76 -~LlVlDdv~~~~-~~~~~-~l~~~l~~~-~~gs~iii-TTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 141 (162)
-+|++||+|... ...|+ .+...+... ..|+.+++ |+.. +.+.+.+.....+++++++.++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 489999999532 34455 344444432 34555544 5544 3566666666789999999999999999
Q ss_pred hCCCCC
Q 039127 142 QHPSGT 147 (162)
Q Consensus 142 ~~af~~ 147 (162)
+.++..
T Consensus 172 ~~a~~~ 177 (229)
T PRK06893 172 RNAYQR 177 (229)
T ss_pred HHHHHc
Confidence 887643
No 7
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.08 E-value=6.2e-10 Score=88.46 Aligned_cols=113 Identities=15% Similarity=0.264 Sum_probs=85.6
Q ss_pred CCCceeeehH-----HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce--------------------
Q 039127 21 SVKLWLGREE-----GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN-------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~-----~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------- 75 (162)
...+.||.+. .++..+++.+ .++.+.+||.+|.||||||+.+.+..+..
T Consensus 136 tL~dyvGQ~hlv~q~gllrs~ieq~------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQDGLLRSLIEQN------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDI 209 (554)
T ss_pred hHHHhcchhhhcCcchHHHHHHHcC------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHH
Confidence 3467788877 5777777665 57888899999999999999998766554
Q ss_pred --------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE--ecCChhhH---hhhCCCCeeeCCCCCHHHH
Q 039127 76 --------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV--TTRNQGVA---SIMGTMPAYELKKLVNDNC 136 (162)
Q Consensus 76 --------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--TTR~~~v~---~~~~~~~~~~l~~L~~~~~ 136 (162)
-+|.+|.++..+..+.+.+ ||...+|+-++| ||.|.... ..+..-.++.|++|..++.
T Consensus 210 fe~aq~~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 210 FEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred HHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 6888999997777776665 444556776665 88876542 3344445899999999999
Q ss_pred HHHHhh
Q 039127 137 LLIFSQ 142 (162)
Q Consensus 137 ~~lf~~ 142 (162)
..++.+
T Consensus 287 ~~iL~r 292 (554)
T KOG2028|consen 287 VTILMR 292 (554)
T ss_pred HHHHHH
Confidence 988876
No 8
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.98 E-value=1.4e-09 Score=85.30 Aligned_cols=120 Identities=17% Similarity=0.082 Sum_probs=76.7
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------ 75 (162)
.+|+|+++ .+..++.... ........+.++|++|+|||+||+.+.+.....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~--~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAK--MRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEE 81 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHH--hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhccc
Confidence 57899999 4444443211 011234567899999999999999998775433
Q ss_pred -EEEEEeCCCCCChhhHHHHHhhccc-------------------cCCCcEEEEecCChhhHhhhC-C-CCeeeCCCCCH
Q 039127 76 -FNFALDDTWKEKYVDWTNMRDLFAA-------------------VASRSKVIVTTRNQGVASIMG-T-MPAYELKKLVN 133 (162)
Q Consensus 76 -~LlVlDdv~~~~~~~~~~l~~~l~~-------------------~~~gs~iiiTTR~~~v~~~~~-~-~~~~~l~~L~~ 133 (162)
.++++|+++.......+.+...+.. ..+.+-|..||+...+...+. . ...+++++++.
T Consensus 82 ~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~ 161 (305)
T TIGR00635 82 GDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTV 161 (305)
T ss_pred CCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCH
Confidence 5899999985554444444433211 112344556777654433221 1 23578999999
Q ss_pred HHHHHHHhhCC
Q 039127 134 DNCLLIFSQHP 144 (162)
Q Consensus 134 ~~~~~lf~~~a 144 (162)
++..+++.+.+
T Consensus 162 ~e~~~il~~~~ 172 (305)
T TIGR00635 162 EELAEIVSRSA 172 (305)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 9
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.97 E-value=5.4e-09 Score=85.59 Aligned_cols=112 Identities=14% Similarity=0.202 Sum_probs=77.1
Q ss_pred CCceeeehH---H---HHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce--------------------
Q 039127 22 VKLWLGREE---G---TVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN-------------------- 75 (162)
Q Consensus 22 ~~~~vGr~~---~---i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------- 75 (162)
..+++|++. . +.+++.. . ....+.++|.+|+||||||+.+++.....
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~-~------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~ 83 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEA-G------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEE 83 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHc-C------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHH
Confidence 467888887 2 4444433 2 35567889999999999999998654322
Q ss_pred ----------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE--ecCChhh---HhhhCCCCeeeCCCCCHHHHHHHH
Q 039127 76 ----------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV--TTRNQGV---ASIMGTMPAYELKKLVNDNCLLIF 140 (162)
Q Consensus 76 ----------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--TTR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf 140 (162)
.++++|+++..+...++.|...+.. |..+++ ||.+... .........+++.+++.++...++
T Consensus 84 ~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL 160 (413)
T PRK13342 84 ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLL 160 (413)
T ss_pred HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHH
Confidence 5899999997777777777766553 444444 3444321 122233357899999999999999
Q ss_pred hhC
Q 039127 141 SQH 143 (162)
Q Consensus 141 ~~~ 143 (162)
.+.
T Consensus 161 ~~~ 163 (413)
T PRK13342 161 KRA 163 (413)
T ss_pred HHH
Confidence 874
No 10
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.96 E-value=3.1e-09 Score=79.34 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=64.5
Q ss_pred eeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce--------------------------
Q 039127 25 WLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN-------------------------- 75 (162)
Q Consensus 25 ~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------------- 75 (162)
|+||+. .|.+.+.++. .+.+.|+|..|+|||+|++.+.+..+..
T Consensus 1 F~gR~~el~~l~~~l~~~~-------~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP-------SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc-------CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHH
Confidence 689999 5555554432 4678899999999999999987766321
Q ss_pred ----------------------------------------------EEEEEeCCCCCC------hhhHHHHHhhccc---
Q 039127 76 ----------------------------------------------FNFALDDTWKEK------YVDWTNMRDLFAA--- 100 (162)
Q Consensus 76 ----------------------------------------------~LlVlDdv~~~~------~~~~~~l~~~l~~--- 100 (162)
.++|+|++.... ......+...+..
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 899999997433 1222334444443
Q ss_pred cCCCcEEEEecCChhhHhh--------hCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 101 VASRSKVIVTTRNQGVASI--------MGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 101 ~~~gs~iiiTTR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
..+.+ +++++....+... .+....+.+++|+.+++++++...
T Consensus 154 ~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~ 203 (234)
T PF01637_consen 154 QQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKEL 203 (234)
T ss_dssp -TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHH
T ss_pred cCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHH
Confidence 33334 4444444433332 222335999999999999999874
No 11
>PRK09087 hypothetical protein; Validated
Probab=98.93 E-value=1.7e-08 Score=76.40 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=68.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce-----------------EEEEEeCCCCCChhhHHHHHhhccc-cCCCcEEEE
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN-----------------FNFALDDTWKEKYVDWTNMRDLFAA-VASRSKVIV 109 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----------------~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iii 109 (162)
.+.+.|+|..|+|||+|++.++...... -++++||++.... .-+.+...+.. ...|..+|+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ili 122 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLM 122 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEE
Confidence 3568999999999999999988655443 2688999974321 12334443332 234677999
Q ss_pred ecCC---------hhhHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 110 TTRN---------QGVASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 110 TTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
|++. +.+.+.+....++++++++.++-..++.+++
T Consensus 123 ts~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 123 TSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred ECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 8874 3445555666789999999999999998775
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.92 E-value=2.9e-09 Score=84.65 Aligned_cols=124 Identities=16% Similarity=0.084 Sum_probs=77.3
Q ss_pred CCCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce---------------------
Q 039127 20 PSVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN--------------------- 75 (162)
Q Consensus 20 ~~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--------------------- 75 (162)
....+|+|++. .+...+.... ..+.....+.++|++|+|||+||+.+++.....
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~--~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~ 99 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAK--KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTN 99 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHH--hcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHh
Confidence 35578999999 3322332211 012335567899999999999999998775432
Q ss_pred ----EEEEEeCCCCCChhhHHHHHhhcccc-------------------CCCcEEEEecCChhhHhhhCC--CCeeeCCC
Q 039127 76 ----FNFALDDTWKEKYVDWTNMRDLFAAV-------------------ASRSKVIVTTRNQGVASIMGT--MPAYELKK 130 (162)
Q Consensus 76 ----~LlVlDdv~~~~~~~~~~l~~~l~~~-------------------~~gs~iiiTTR~~~v~~~~~~--~~~~~l~~ 130 (162)
.++++|+++..+....+.+...+... .+.+-|..|++...+...+.. ...+++.+
T Consensus 100 l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~ 179 (328)
T PRK00080 100 LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEF 179 (328)
T ss_pred cccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCC
Confidence 58899999854443333333322110 123445567775544332211 23589999
Q ss_pred CCHHHHHHHHhhCCC
Q 039127 131 LVNDNCLLIFSQHPS 145 (162)
Q Consensus 131 L~~~~~~~lf~~~af 145 (162)
++.++..+++.+.+-
T Consensus 180 ~~~~e~~~il~~~~~ 194 (328)
T PRK00080 180 YTVEELEKIVKRSAR 194 (328)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
No 13
>PF13173 AAA_14: AAA domain
Probab=98.90 E-value=9.4e-09 Score=70.95 Aligned_cols=87 Identities=22% Similarity=0.231 Sum_probs=65.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC--ce-------------------------------EEEEEeCCCCCChhhHHHH
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT--VN-------------------------------FNFALDDTWKEKYVDWTNM 94 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~--~~-------------------------------~LlVlDdv~~~~~~~~~~l 94 (162)
.+++.|.|+.|+|||||++.++.+.. .+ .+++||++. ....|...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq--~~~~~~~~ 79 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQ--YLPDWEDA 79 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhh--hhccHHHH
Confidence 36889999999999999998886654 11 579999999 66778777
Q ss_pred HhhccccCCCcEEEEecCChhhHhh------hCCCCeeeCCCCCHHHH
Q 039127 95 RDLFAAVASRSKVIVTTRNQGVASI------MGTMPAYELKKLVNDNC 136 (162)
Q Consensus 95 ~~~l~~~~~gs~iiiTTR~~~v~~~------~~~~~~~~l~~L~~~~~ 136 (162)
...+....+..+|++|+.+...... .+....+++.||+-.|.
T Consensus 80 lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 80 LKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7777665566789999988765532 12223689999997763
No 14
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.90 E-value=3.5e-08 Score=74.07 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=74.1
Q ss_pred CCCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-----------------------
Q 039127 21 SVKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN----------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------- 75 (162)
...+|+|.+. +-...+..... ..+....-+.+||++|+||||||..+.+.....
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~-~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~ 100 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAK-KRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLK 100 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHH-CTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--
T ss_pred CHHHccCcHHHHhhhHHHHHHHH-hcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcC
Confidence 5689999999 22222221100 012357778899999999999999999887665
Q ss_pred --EEEEEeCCCCCChhhHHHHHhhcccc------C-------------CCcEEEEecCChhhHhhhCCCC--eeeCCCCC
Q 039127 76 --FNFALDDTWKEKYVDWTNMRDLFAAV------A-------------SRSKVIVTTRNQGVASIMGTMP--AYELKKLV 132 (162)
Q Consensus 76 --~LlVlDdv~~~~~~~~~~l~~~l~~~------~-------------~gs~iiiTTR~~~v~~~~~~~~--~~~l~~L~ 132 (162)
-+|.+|.++..+..+.+.|...+.++ + +-+-|=.|||...+...+...- ..+++..+
T Consensus 101 ~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~ 180 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYS 180 (233)
T ss_dssp TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----T
T ss_pred CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCC
Confidence 67888999988888877777665421 1 1234556888876665444432 45799999
Q ss_pred HHHHHHHHhhCC
Q 039127 133 NDNCLLIFSQHP 144 (162)
Q Consensus 133 ~~~~~~lf~~~a 144 (162)
.+|-..+..+.+
T Consensus 181 ~~el~~Iv~r~a 192 (233)
T PF05496_consen 181 EEELAKIVKRSA 192 (233)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 15
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.86 E-value=2e-08 Score=87.12 Aligned_cols=115 Identities=16% Similarity=0.232 Sum_probs=77.9
Q ss_pred CCCceeeehH-----HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce--------------------
Q 039127 21 SVKLWLGREE-----GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN-------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~-----~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------- 75 (162)
...+|+|++. ..+..+.... ....+.++|++|+||||||+.+++.....
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~ 99 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDR 99 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHH
Confidence 3467899888 2333334333 35567899999999999999997654322
Q ss_pred -----------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE--ecCChh--hH-hhhCCCCeeeCCCCCHHHHHHH
Q 039127 76 -----------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV--TTRNQG--VA-SIMGTMPAYELKKLVNDNCLLI 139 (162)
Q Consensus 76 -----------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--TTR~~~--v~-~~~~~~~~~~l~~L~~~~~~~l 139 (162)
.+++||+++..+...++.|...+. .|+.+++ ||.+.. +. ........+.+.+|+.++...+
T Consensus 100 a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~I 176 (725)
T PRK13341 100 AKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQL 176 (725)
T ss_pred HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHH
Confidence 489999999777777777776554 3555555 344432 11 1222234799999999999999
Q ss_pred HhhCC
Q 039127 140 FSQHP 144 (162)
Q Consensus 140 f~~~a 144 (162)
+.+.+
T Consensus 177 L~~~l 181 (725)
T PRK13341 177 LKRAL 181 (725)
T ss_pred HHHHH
Confidence 88643
No 16
>PRK06620 hypothetical protein; Validated
Probab=98.83 E-value=3.4e-08 Score=74.15 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=64.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce---------------EEEEEeCCCCCChhhHHHHHhhccc-cCCCcEEEEecC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN---------------FNFALDDTWKEKYVDWTNMRDLFAA-VASRSKVIVTTR 112 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiiTTR 112 (162)
+.+.|||.+|+|||+|++.+++..... -++++||++..+.. .+...+.. ...|..+|+|++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi~~~~~~---~lf~l~N~~~e~g~~ilits~ 121 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDIENWQEP---ALLHIFNIINEKQKYLLLTSS 121 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEeccccchHH---HHHHHHHHHHhcCCEEEEEcC
Confidence 568899999999999999887765432 37889999832221 23222221 245678999987
Q ss_pred Chh-------hHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 113 NQG-------VASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 113 ~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
... +.+.+...-++++++++.++...++++.+
T Consensus 122 ~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 122 DKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred CCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 532 33444455579999999999888887764
No 17
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.83 E-value=2e-08 Score=76.39 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=66.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC-----ce---------------------EEEEEeCCCCCC-hhhHHH-HHhhcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT-----VN---------------------FNFALDDTWKEK-YVDWTN-MRDLFA 99 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~-----~~---------------------~LlVlDdv~~~~-~~~~~~-l~~~l~ 99 (162)
.+.+.|+|+.|+|||+|++.+++... +. -++++||+.... ...|+. +...+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n 124 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYN 124 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHH
Confidence 35788999999999999998876432 11 279999997432 234543 323332
Q ss_pred c-cCCC-cEEEEecCCh---------hhHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 100 A-VASR-SKVIVTTRNQ---------GVASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 100 ~-~~~g-s~iiiTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
. ...| .++|+||++. .+.+.+.+..++++.+++.++-.+++.+++
T Consensus 125 ~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 125 RILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred HHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 2 1233 3689999764 344555566789999999999999988754
No 18
>PRK08727 hypothetical protein; Validated
Probab=98.79 E-value=2.3e-08 Score=75.97 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=65.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce--------------------------EEEEEeCCCCCC-hhhHH-HHHhhccc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN--------------------------FNFALDDTWKEK-YVDWT-NMRDLFAA 100 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~--------------------------~LlVlDdv~~~~-~~~~~-~l~~~l~~ 100 (162)
..+.|+|..|+|||+|++.+++....+ -+||+||+.... ...|. .+...+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~ 121 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNR 121 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHH
Confidence 458899999999999999986542211 589999997432 12343 33333332
Q ss_pred -cCCCcEEEEecCCh---------hhHhhhCCCCeeeCCCCCHHHHHHHHhhCCC
Q 039127 101 -VASRSKVIVTTRNQ---------GVASIMGTMPAYELKKLVNDNCLLIFSQHPS 145 (162)
Q Consensus 101 -~~~gs~iiiTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~af 145 (162)
..+|..+|+||+.. .+.+.+.....+++++++.++-..++.+++.
T Consensus 122 ~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 122 ARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred HHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 23466799999863 2333344455799999999999999998653
No 19
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.77 E-value=4.7e-08 Score=73.32 Aligned_cols=96 Identities=11% Similarity=0.120 Sum_probs=63.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc---e-----------------------EEEEEeCCCCCChh-h-HHHHHhhcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV---N-----------------------FNFALDDTWKEKYV-D-WTNMRDLFA 99 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~---~-----------------------~LlVlDdv~~~~~~-~-~~~l~~~l~ 99 (162)
...+.|+|.+|+|||+||+.+++.... . -++|+||++..+.. . .+.+...+.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~ 117 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYN 117 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHH
Confidence 467889999999999999998755321 1 37999999843322 2 344544443
Q ss_pred c-cCCCcEEEEecCChh---------hHhhhCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 100 A-VASRSKVIVTTRNQG---------VASIMGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 100 ~-~~~gs~iiiTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
. ...+..+|+||+... +...+.....+++.+++.++...++...
T Consensus 118 ~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 118 RVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred HHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 2 123457888887532 2222322346899999999989888764
No 20
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.72 E-value=4.1e-07 Score=69.94 Aligned_cols=96 Identities=14% Similarity=0.066 Sum_probs=64.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce----------------------------------------------------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------------------------- 75 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------------------------- 75 (162)
...+.|+|.+|+|||||++.+++.....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 4578899999999999999998764411
Q ss_pred --EEEEEeCCCCCChhhHHHHHhhcccc---CCCcEEEEecCChhhHhhhC----------CCCeeeCCCCCHHHHHHHH
Q 039127 76 --FNFALDDTWKEKYVDWTNMRDLFAAV---ASRSKVIVTTRNQGVASIMG----------TMPAYELKKLVNDNCLLIF 140 (162)
Q Consensus 76 --~LlVlDdv~~~~~~~~~~l~~~l~~~---~~gs~iiiTTR~~~v~~~~~----------~~~~~~l~~L~~~~~~~lf 140 (162)
.++|+||++..+...++.+....... .....|++|.... ....+. ....+++.+|+.++...++
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 79999999976666777765433221 1222445655433 221111 1235789999999999988
Q ss_pred hhCC
Q 039127 141 SQHP 144 (162)
Q Consensus 141 ~~~a 144 (162)
...+
T Consensus 202 ~~~l 205 (269)
T TIGR03015 202 EHRL 205 (269)
T ss_pred HHHH
Confidence 7653
No 21
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.72 E-value=2.3e-08 Score=75.32 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=72.3
Q ss_pred CCCceeeehH----HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc-----e----------------
Q 039127 21 SVKLWLGREE----GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV-----N---------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~----~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-----~---------------- 75 (162)
....++|-.. .....+.... +.....+.|+|..|+|||.|.+++++.... +
T Consensus 7 Fdnfv~g~~N~~a~~~~~~ia~~~----~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~ 82 (219)
T PF00308_consen 7 FDNFVVGESNELAYAAAKAIAENP----GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADA 82 (219)
T ss_dssp CCCS--TTTTHHHHHHHHHHHHST----TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHH
T ss_pred cccCCcCCcHHHHHHHHHHHHhcC----CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHH
Confidence 3445567533 4444454443 123445789999999999999999875321 1
Q ss_pred ----------------EEEEEeCCCCCC-hhhHH-HHHhhccc-cCCCcEEEEecCCh---------hhHhhhCCCCeee
Q 039127 76 ----------------FNFALDDTWKEK-YVDWT-NMRDLFAA-VASRSKVIVTTRNQ---------GVASIMGTMPAYE 127 (162)
Q Consensus 76 ----------------~LlVlDdv~~~~-~~~~~-~l~~~l~~-~~~gs~iiiTTR~~---------~v~~~~~~~~~~~ 127 (162)
=+|++||++... ...|. .+...+.. ...|.++|+|+... .+.+.+...-+++
T Consensus 83 ~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~ 162 (219)
T PF00308_consen 83 LRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVE 162 (219)
T ss_dssp HHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEE
T ss_pred HHcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhh
Confidence 489999998432 22333 33333332 24577899999653 2334444555799
Q ss_pred CCCCCHHHHHHHHhhCC
Q 039127 128 LKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 128 l~~L~~~~~~~lf~~~a 144 (162)
+.+++.++...++.+.|
T Consensus 163 l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 163 LQPPDDEDRRRILQKKA 179 (219)
T ss_dssp E----HHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 22
>PRK05642 DNA replication initiation factor; Validated
Probab=98.71 E-value=1.1e-07 Score=72.33 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=66.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC---ce-----------------------EEEEEeCCCCC-ChhhHHH-HHhhcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT---VN-----------------------FNFALDDTWKE-KYVDWTN-MRDLFA 99 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~---~~-----------------------~LlVlDdv~~~-~~~~~~~-l~~~l~ 99 (162)
...+.|+|..|+|||+|++.+++... .+ =+|++||+... ....|+. +...+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n 124 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFN 124 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHH
Confidence 35678999999999999999875321 11 26899999733 2234443 444444
Q ss_pred c-cCCCcEEEEecCChh---------hHhhhCCCCeeeCCCCCHHHHHHHHhhCCC
Q 039127 100 A-VASRSKVIVTTRNQG---------VASIMGTMPAYELKKLVNDNCLLIFSQHPS 145 (162)
Q Consensus 100 ~-~~~gs~iiiTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~af 145 (162)
. ...|..+|+|++... +.+.+....++++++++.++...++++++.
T Consensus 125 ~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 125 RLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred HHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 3 234677899887532 233344445799999999999999985543
No 23
>PLN03025 replication factor C subunit; Provisional
Probab=98.69 E-value=1.1e-07 Score=75.38 Aligned_cols=118 Identities=13% Similarity=0.178 Sum_probs=77.9
Q ss_pred CCCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC-----Cce------------------
Q 039127 21 SVKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK-----TVN------------------ 75 (162)
Q Consensus 21 ~~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~-----~~~------------------ 75 (162)
...+++|.++ +.+..+.... +.+-+.++|.+|+||||+|+.+.+.. ...
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~ 84 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNK 84 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHH
Confidence 3467889887 3333333333 24456799999999999998876542 000
Q ss_pred ----------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh-hhHh-hhCCCCeeeCCCCCHHHHH
Q 039127 76 ----------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ-GVAS-IMGTMPAYELKKLVNDNCL 137 (162)
Q Consensus 76 ----------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~-~v~~-~~~~~~~~~l~~L~~~~~~ 137 (162)
-++++|+++..+......|...+......+++++++... .+.. .......+++.+++.++..
T Consensus 85 i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~ 164 (319)
T PLN03025 85 IKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL 164 (319)
T ss_pred HHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHH
Confidence 389999999877777777877776545566677666442 2211 1122236899999999988
Q ss_pred HHHhhCC
Q 039127 138 LIFSQHP 144 (162)
Q Consensus 138 ~lf~~~a 144 (162)
..+...+
T Consensus 165 ~~L~~i~ 171 (319)
T PLN03025 165 GRLMKVV 171 (319)
T ss_pred HHHHHHH
Confidence 8887654
No 24
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.68 E-value=8.4e-08 Score=72.29 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=61.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce----------------------EEEEEeCCCCCChhhHHHHHhhcccc-CCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN----------------------FNFALDDTWKEKYVDWTNMRDLFAAV-ASR 104 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~-~~g 104 (162)
...+.|+|..|+|||+||+.+++..... -++++||++..+......+...+... ..+
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~ 121 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHG 121 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcC
Confidence 4567899999999999999998753111 47999999854444444555555431 234
Q ss_pred c-EEEEecCChhhH--------hhhCCCCeeeCCCCCHHHHHHHHhh
Q 039127 105 S-KVIVTTRNQGVA--------SIMGTMPAYELKKLVNDNCLLIFSQ 142 (162)
Q Consensus 105 s-~iiiTTR~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~~ 142 (162)
. .+++|++..... +.+.....+++.+++.++-..++.+
T Consensus 122 ~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 122 QGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred CcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 4 366666653211 1222235789999999887777665
No 25
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=3.2e-07 Score=73.99 Aligned_cols=116 Identities=11% Similarity=0.141 Sum_probs=80.9
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC-------------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------------------------- 73 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------------------------- 73 (162)
-.+++|.+. .+.+.+..+. -...+.++|+.|+||||+|+.+.+...
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~ 88 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCL 88 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 478899999 4444444333 345678999999999999988865321
Q ss_pred ----------ce--------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC-hhhHhh-hC
Q 039127 74 ----------VN--------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN-QGVASI-MG 121 (162)
Q Consensus 74 ----------~~--------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~-~~v~~~-~~ 121 (162)
.. -++|+|+++..+...++.+...+.......++|++|.+ ..+... .+
T Consensus 89 d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~S 168 (363)
T PRK14961 89 DLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILS 168 (363)
T ss_pred ceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHh
Confidence 00 38999999977777788888888765556666666544 333322 22
Q ss_pred CCCeeeCCCCCHHHHHHHHhhC
Q 039127 122 TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 122 ~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
....+++.+++.++....+...
T Consensus 169 Rc~~~~~~~l~~~el~~~L~~~ 190 (363)
T PRK14961 169 RCLQFKLKIISEEKIFNFLKYI 190 (363)
T ss_pred hceEEeCCCCCHHHHHHHHHHH
Confidence 2347999999999988877654
No 26
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.67 E-value=1.5e-07 Score=64.59 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=46.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC---ce------------------------------------EEEEEeCCCCCCh
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT---VN------------------------------------FNFALDDTWKEKY 88 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~---~~------------------------------------~LlVlDdv~~~~~ 88 (162)
.+.+.|+|.+|+|||++++.+++... .. .++++||++....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 45788999999999999999987641 11 7899999984323
Q ss_pred hhHHHHHhhcccc------CCCcEEEEecCChh
Q 039127 89 VDWTNMRDLFAAV------ASRSKVIVTTRNQG 115 (162)
Q Consensus 89 ~~~~~l~~~l~~~------~~gs~iiiTTR~~~ 115 (162)
.....+...+... ..+..+|+||....
T Consensus 99 ~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 99 GAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3334444444332 35677888887654
No 27
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=2.5e-07 Score=77.44 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=83.4
Q ss_pred CCCceeeehH--H-HHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc----------e------------
Q 039127 21 SVKLWLGREE--G-TVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV----------N------------ 75 (162)
Q Consensus 21 ~~~~~vGr~~--~-i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~----------~------------ 75 (162)
.-.+++|.+. . +.+.+..+. -...+.++|..|+||||+|+.+++...- .
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~r------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~ 92 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDR------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFN 92 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHh
Confidence 3468899988 3 333333322 3457889999999999999988653210 0
Q ss_pred -------------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEE-EecCChhhH
Q 039127 76 -------------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVI-VTTRNQGVA 117 (162)
Q Consensus 76 -------------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-iTTR~~~v~ 117 (162)
-++|+|+++..+...|..|...+......+.+| +||+.+.+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 589999999877888999988887655555554 465555554
Q ss_pred hhh-CCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 118 SIM-GTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 118 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
..+ .....+++.+++.++....+.+.+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~ 200 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYIT 200 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHH
Confidence 433 233468999999999998887665
No 28
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.64 E-value=2.6e-07 Score=73.19 Aligned_cols=117 Identities=13% Similarity=0.166 Sum_probs=75.1
Q ss_pred CCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC-----c--------------------
Q 039127 22 VKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT-----V-------------------- 74 (162)
Q Consensus 22 ~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-----~-------------------- 74 (162)
..+++|++. +.+..+.... ..+.+.++|.+|+|||++|+.+.+... .
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhc
Confidence 467889888 3333333332 234577999999999999987543210 0
Q ss_pred --------------------------------------eEEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh-h
Q 039127 75 --------------------------------------NFNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ-G 115 (162)
Q Consensus 75 --------------------------------------~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~-~ 115 (162)
.-++|+||++..+...+..+...+......+++|+|+.+. .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 0279999998655556666766665544556777776543 2
Q ss_pred hHhhh-CCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 116 VASIM-GTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 116 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
+...+ .....+.+.+++.++...++...+
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~ 197 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIA 197 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHH
Confidence 22222 223468899999999888887653
No 29
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.60 E-value=1.1e-07 Score=77.09 Aligned_cols=119 Identities=17% Similarity=0.071 Sum_probs=70.7
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC-----ce------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT-----VN------------------ 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-----~~------------------ 75 (162)
+..++||++ ++...|...- .+.....+.|+|.+|+|||++++.++++.. ..
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~---~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPAL---RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh---CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 367999998 4444442211 112334577999999999999999875431 00
Q ss_pred ----------------------------------EEEEEeCCCCCC----hhhHHHHHhhccccCCCcE--EEEecCChh
Q 039127 76 ----------------------------------FNFALDDTWKEK----YVDWTNMRDLFAAVASRSK--VIVTTRNQG 115 (162)
Q Consensus 76 ----------------------------------~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iiiTTR~~~ 115 (162)
.++|||+++... .+.+..+...+.. ..+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 689999998421 2233333333222 22332 455555443
Q ss_pred hHhhhC-------CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 116 VASIMG-------TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 116 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
+..... ....+.+.+++.++..+++..++
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 322111 12357899999999999988654
No 30
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.60 E-value=4.3e-07 Score=71.38 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=76.5
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
+-.+++|+++ .+..++-. . ..+.+.++|..|+|||++|+.+.+.....
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~-~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKE-K------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRN 87 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhC-C------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHH
Confidence 3467899988 44444433 2 23456899999999999999886642100
Q ss_pred ----------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh-hhH-hhhCCCCeeeCCCCCHHHHH
Q 039127 76 ----------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ-GVA-SIMGTMPAYELKKLVNDNCL 137 (162)
Q Consensus 76 ----------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~-~v~-~~~~~~~~~~l~~L~~~~~~ 137 (162)
-++++|+++......+..+...+......+.+|+++... .+. ........+++.+++.++..
T Consensus 88 ~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~ 167 (319)
T PRK00440 88 KIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVA 167 (319)
T ss_pred HHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHH
Confidence 378999998666666677777766555556677666432 221 11122336889999999988
Q ss_pred HHHhhCC
Q 039127 138 LIFSQHP 144 (162)
Q Consensus 138 ~lf~~~a 144 (162)
..+.+.+
T Consensus 168 ~~l~~~~ 174 (319)
T PRK00440 168 ERLRYIA 174 (319)
T ss_pred HHHHHHH
Confidence 7777654
No 31
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=4.1e-07 Score=75.72 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=78.7
Q ss_pred CCCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc------------------------
Q 039127 21 SVKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV------------------------ 74 (162)
Q Consensus 21 ~~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------------------------ 74 (162)
.-.+++|.+. ..+...+..+ .-...+.++|++|+||||+|+.+.+...-
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~ 86 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFM 86 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCC
Confidence 3578999988 4333333333 12356789999999999999988653210
Q ss_pred e-------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE-ecCChhhHhhh-C
Q 039127 75 N-------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV-TTRNQGVASIM-G 121 (162)
Q Consensus 75 ~-------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-TTR~~~v~~~~-~ 121 (162)
. -++++|+++..+...++.|...+........+|+ ||....+...+ .
T Consensus 87 dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~S 166 (472)
T PRK14962 87 DVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIIS 166 (472)
T ss_pred ccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhc
Confidence 0 4899999986666677778777765443444444 44333443332 3
Q ss_pred CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 122 TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 122 ~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
....+++.+++.++....+.+.+
T Consensus 167 R~~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 167 RCQVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred CcEEEEECCccHHHHHHHHHHHH
Confidence 33478999999999888887654
No 32
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=4.2e-07 Score=78.71 Aligned_cols=117 Identities=12% Similarity=0.133 Sum_probs=81.7
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc------------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV------------------------ 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------------------------ 74 (162)
-.+++|.+. .+.+++-.+. -...+.++|..|+||||+|+.+.+...-
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~ 88 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV 88 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCc
Confidence 478999988 4444443332 2456679999999999999866542210
Q ss_pred e-------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh-hhHhhh-C
Q 039127 75 N-------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ-GVASIM-G 121 (162)
Q Consensus 75 ~-------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~-~v~~~~-~ 121 (162)
. -++|||+++..+...|..|+..+..-....++|++|.+. .+...+ +
T Consensus 89 DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS 168 (830)
T PRK07003 89 DYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS 168 (830)
T ss_pred eEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh
Confidence 0 478999999888888999988887655667766666553 333222 2
Q ss_pred CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 122 TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 122 ~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.-..+++..++.++..+.+.+.+
T Consensus 169 RCq~f~Fk~Ls~eeIv~~L~~Il 191 (830)
T PRK07003 169 RCLQFNLKQMPAGHIVSHLERIL 191 (830)
T ss_pred heEEEecCCcCHHHHHHHHHHHH
Confidence 22469999999999988887653
No 33
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=4.5e-07 Score=76.01 Aligned_cols=117 Identities=11% Similarity=0.108 Sum_probs=80.9
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC-----c----------------e--
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT-----V----------------N-- 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-----~----------------~-- 75 (162)
-.+++|.+. .+.+++.... -...+.++|++|+||||+|+.+++... . .
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~d 86 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPD 86 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCc
Confidence 467899888 3333333332 345678999999999999988764431 0 0
Q ss_pred -------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEec-CChhhHhhh-CC
Q 039127 76 -------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTT-RNQGVASIM-GT 122 (162)
Q Consensus 76 -------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTT-R~~~v~~~~-~~ 122 (162)
-++|+|+++..+...+..|...+........+|++| ....+...+ ..
T Consensus 87 v~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 87 VLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred eEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 589999999777788888888887655555555554 334443323 22
Q ss_pred CCeeeCCCCCHHHHHHHHhhCC
Q 039127 123 MPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 123 ~~~~~l~~L~~~~~~~lf~~~a 144 (162)
...+++.+++.++....+.+.+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHH
Confidence 3479999999999999887754
No 34
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=7.1e-07 Score=75.31 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=81.5
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC------------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------------------------ 73 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------------------------ 73 (162)
.-.+++|.+. .+.+.+.... -...+.++|+.|+||||+|+.+++...
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~r------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~ 87 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQK------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSF 87 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCC
Confidence 3468899999 4555554433 345677999999999999998865221
Q ss_pred ---------ce----------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEE-EecCChhhHhh-h
Q 039127 74 ---------VN----------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVI-VTTRNQGVASI-M 120 (162)
Q Consensus 74 ---------~~----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-iTTR~~~v~~~-~ 120 (162)
.. -++|+|+++..+...++.|+..+........+| +||....+... .
T Consensus 88 ~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~ 167 (546)
T PRK14957 88 IDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTIL 167 (546)
T ss_pred CceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHH
Confidence 00 589999999888888999998888655555555 56554444422 2
Q ss_pred CCCCeeeCCCCCHHHHHHHHhh
Q 039127 121 GTMPAYELKKLVNDNCLLIFSQ 142 (162)
Q Consensus 121 ~~~~~~~l~~L~~~~~~~lf~~ 142 (162)
.....+++.+++.++....+.+
T Consensus 168 SRc~~~~f~~Ls~~eI~~~L~~ 189 (546)
T PRK14957 168 SRCIQLHLKHISQADIKDQLKI 189 (546)
T ss_pred HheeeEEeCCCCHHHHHHHHHH
Confidence 3334799999999987766665
No 35
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.57 E-value=6.9e-07 Score=79.28 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=76.5
Q ss_pred CCCceeeehHHHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC-ce------------------------
Q 039127 21 SVKLWLGREEGTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT-VN------------------------ 75 (162)
Q Consensus 21 ~~~~~vGr~~~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~------------------------ 75 (162)
..+.++-|.. +.+.|-.. ...+++.|.|++|.||||++..+..... ..
T Consensus 12 ~~~~~~~R~r-l~~~l~~~------~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 12 RLHNTVVRER-LLAKLSGA------NNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred CccccCcchH-HHHHHhcc------cCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 3467777777 55555432 2577899999999999999999865432 11
Q ss_pred --------------------------------------EEEEEeCCCCCChhhHH-HHHhhccccCCCcEEEEecCChhh
Q 039127 76 --------------------------------------FNFALDDTWKEKYVDWT-NMRDLFAAVASRSKVIVTTRNQGV 116 (162)
Q Consensus 76 --------------------------------------~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~iiiTTR~~~v 116 (162)
.+|||||++..+..... .+...+.....+.++|+|||...-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 89999999854333333 333333334556688899998421
Q ss_pred H---hhhCCCCeeeCC----CCCHHHHHHHHhhCC
Q 039127 117 A---SIMGTMPAYELK----KLVNDNCLLIFSQHP 144 (162)
Q Consensus 117 ~---~~~~~~~~~~l~----~L~~~~~~~lf~~~a 144 (162)
. ..........+. +|+.+|+..+|....
T Consensus 165 ~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 165 LGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 1 111122345566 899999999997653
No 36
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=9.5e-07 Score=75.62 Aligned_cols=117 Identities=12% Similarity=0.137 Sum_probs=82.5
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc------------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV------------------------ 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------------------------ 74 (162)
-.+++|.+. .+.+++..+. -...+.++|..|+||||+|+.+.+...-
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr------l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hp 87 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR------LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFI 87 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCC
Confidence 478999998 4555554433 3467889999999999999887543210
Q ss_pred -----------e--------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC-hhhH-hhhC
Q 039127 75 -----------N--------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN-QGVA-SIMG 121 (162)
Q Consensus 75 -----------~--------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~-~~v~-~~~~ 121 (162)
. -++|+|+++..+...+..|+..+.....+..+|++|.+ ..+. ....
T Consensus 88 DviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlS 167 (702)
T PRK14960 88 DLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS 167 (702)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHH
Confidence 0 48999999987888888888888765556666666654 3332 2223
Q ss_pred CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 122 TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 122 ~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
....+++.+++.++....+.+.+
T Consensus 168 RCq~feFkpLs~eEI~k~L~~Il 190 (702)
T PRK14960 168 RCLQFTLRPLAVDEITKHLGAIL 190 (702)
T ss_pred hhheeeccCCCHHHHHHHHHHHH
Confidence 33479999999999887776543
No 37
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=1.2e-06 Score=69.32 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=83.7
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC------Cc----------e--------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK------TV----------N-------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~------~~----------~-------- 75 (162)
.+++|.+. .+.+++-.+. -...+.++|+.|+|||++|+.+++.. .. .
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR------FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC------CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH
Confidence 46778777 5555554433 35677899999999999998887631 00 0
Q ss_pred -----------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChh-hHhh-hCCCCeeeCCCCCHHHH
Q 039127 76 -----------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQG-VASI-MGTMPAYELKKLVNDNC 136 (162)
Q Consensus 76 -----------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~-v~~~-~~~~~~~~l~~L~~~~~ 136 (162)
-++|+|+++..+...++.|+..+.....++.+|++|.+.+ +... ......+++.+++.++.
T Consensus 78 ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~ 157 (313)
T PRK05564 78 IRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEI 157 (313)
T ss_pred HHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHH
Confidence 5888999887788899999999998777888888876543 2222 22234789999999998
Q ss_pred HHHHhhC
Q 039127 137 LLIFSQH 143 (162)
Q Consensus 137 ~~lf~~~ 143 (162)
...+.+.
T Consensus 158 ~~~l~~~ 164 (313)
T PRK05564 158 EKFISYK 164 (313)
T ss_pred HHHHHHH
Confidence 8777654
No 38
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.52 E-value=1.7e-06 Score=68.15 Aligned_cols=115 Identities=12% Similarity=0.103 Sum_probs=72.9
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
...+++|.+. .+..++.... -...+.++|.+|+|||++|+.+++.....
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~------~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~ 92 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGR------IPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFA 92 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC------CCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHHHHHHH
Confidence 4478899988 4544444322 34577779999999999999987643210
Q ss_pred ---------EEEEEeCCCCC-ChhhHHHHHhhccccCCCcEEEEecCChh-hHh-hhCCCCeeeCCCCCHHHHHHHHh
Q 039127 76 ---------FNFALDDTWKE-KYVDWTNMRDLFAAVASRSKVIVTTRNQG-VAS-IMGTMPAYELKKLVNDNCLLIFS 141 (162)
Q Consensus 76 ---------~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iiiTTR~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~ 141 (162)
-++|+|+++.. .......+...+.....++++|+||.... +.. .......+.+...+.++...++.
T Consensus 93 ~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 93 STVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred HhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHH
Confidence 47999999855 33444555555555556778888886532 111 11222357777777777665543
No 39
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.1e-06 Score=73.00 Aligned_cols=118 Identities=9% Similarity=0.015 Sum_probs=81.7
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc-----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV----------------------- 74 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~----------------------- 74 (162)
.-.+++|.+. .+..++.... -...+.++|..|+||||+|+.+++...-
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGIS 89 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCC
Confidence 3468899988 4444444433 2346789999999999999988643210
Q ss_pred -e-------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEE-EEecCChhhHhhh-
Q 039127 75 -N-------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKV-IVTTRNQGVASIM- 120 (162)
Q Consensus 75 -~-------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i-iiTTR~~~v~~~~- 120 (162)
. -++|+|+++..+...++.|+..+........+ +.||....+...+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 0 48999999988888999998888654444444 4555555554333
Q ss_pred CCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 121 GTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 121 ~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
..-..|.+.+++.++....+.+.+
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHH
Confidence 333469999999988887777653
No 40
>PRK04195 replication factor C large subunit; Provisional
Probab=98.51 E-value=8.5e-07 Score=74.09 Aligned_cols=119 Identities=16% Similarity=0.105 Sum_probs=76.8
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
...+++|++. .+.+|+..-. .+...+.+.|+|++|+||||+|+.+++.....
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~---~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~ 88 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWL---KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEA 88 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHh---cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHh
Confidence 4468999988 5555554322 11225688899999999999999998765422
Q ss_pred -----------EEEEEeCCCCCCh----hhHHHHHhhccccCCCcEEEEecCCh-hhH--hhhCCCCeeeCCCCCHHHHH
Q 039127 76 -----------FNFALDDTWKEKY----VDWTNMRDLFAAVASRSKVIVTTRNQ-GVA--SIMGTMPAYELKKLVNDNCL 137 (162)
Q Consensus 76 -----------~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iiiTTR~~-~v~--~~~~~~~~~~l~~L~~~~~~ 137 (162)
-++|+|++++... ..+..+...+.. . ...+|+++.+. ... ........+++.+++.++..
T Consensus 89 ~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-~-~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~ 166 (482)
T PRK04195 89 ATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK-A-KQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIV 166 (482)
T ss_pred hccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc-C-CCCEEEeccCccccchhhHhccceEEEecCCCHHHHH
Confidence 4899999985432 345666666552 2 33455555432 221 11222346889999999988
Q ss_pred HHHhhCC
Q 039127 138 LIFSQHP 144 (162)
Q Consensus 138 ~lf~~~a 144 (162)
..+.+.+
T Consensus 167 ~~L~~i~ 173 (482)
T PRK04195 167 PVLKRIC 173 (482)
T ss_pred HHHHHHH
Confidence 8877654
No 41
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=1.6e-06 Score=76.39 Aligned_cols=116 Identities=13% Similarity=0.159 Sum_probs=82.4
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc------------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV------------------------ 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------------------------ 74 (162)
-.+++|.+. .+.+++..+. -...+.++|..|+||||+|+.+++...-
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~ 88 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFV 88 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCc
Confidence 468999999 4555554433 2456689999999999999888643210
Q ss_pred -----------e--------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE-ecCChhhHhh-hC
Q 039127 75 -----------N--------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV-TTRNQGVASI-MG 121 (162)
Q Consensus 75 -----------~--------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-TTR~~~v~~~-~~ 121 (162)
+ -++|+|+++..+...++.|+..+..-....++|+ ||....+... ..
T Consensus 89 DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS 168 (944)
T PRK14949 89 DLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS 168 (944)
T ss_pred eEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH
Confidence 0 4899999998888999999888876555555555 4444544432 22
Q ss_pred CCCeeeCCCCCHHHHHHHHhhC
Q 039127 122 TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 122 ~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
....|++.+|+.++....+.+.
T Consensus 169 RCq~f~fkpLs~eEI~~~L~~i 190 (944)
T PRK14949 169 RCLQFNLKSLTQDEIGTQLNHI 190 (944)
T ss_pred hheEEeCCCCCHHHHHHHHHHH
Confidence 2347999999999998888764
No 42
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.44 E-value=1.6e-06 Score=70.00 Aligned_cols=100 Identities=16% Similarity=0.078 Sum_probs=64.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC--------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE-------- 86 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~-------- 86 (162)
.+-+.++|++|+|||++|+.+++..... .+|++|+++..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~ 235 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG 235 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC
Confidence 4558899999999999999998765433 58999998732
Q ss_pred ---ChhhHHHHHhhc---cc--cCCCcEEEEecCChhhH-hh-hC---CCCeeeCCCCCHHHHHHHHhhCCCCC
Q 039127 87 ---KYVDWTNMRDLF---AA--VASRSKVIVTTRNQGVA-SI-MG---TMPAYELKKLVNDNCLLIFSQHPSGT 147 (162)
Q Consensus 87 ---~~~~~~~l~~~l---~~--~~~gs~iiiTTR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~af~~ 147 (162)
+...+..+...+ .. ...+..||.||...... .. .. -...+++...+.++..++|+.++.+.
T Consensus 236 ~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~ 309 (364)
T TIGR01242 236 TSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM 309 (364)
T ss_pred CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC
Confidence 111222232222 21 12355777787754322 11 11 13468899999999999998876443
No 43
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.4e-06 Score=74.56 Aligned_cols=116 Identities=13% Similarity=0.150 Sum_probs=81.4
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc------------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV------------------------ 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------------------------ 74 (162)
-.+++|.+. .+.+.+..+. -...+.++|..|+||||+|+.+.+...-
T Consensus 15 FddVIGQe~vv~~L~~al~~gR------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEID 88 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHH
Confidence 478999999 4555554443 3456789999999999999887532210
Q ss_pred -----e-------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcE-EEEecCChhhH
Q 039127 75 -----N-------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSK-VIVTTRNQGVA 117 (162)
Q Consensus 75 -----~-------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~-iiiTTR~~~v~ 117 (162)
. -++|+|+++..+...++.|+..+..-..... |++||....+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 0 4899999998888899999888876444554 55566555554
Q ss_pred hhhC-CCCeeeCCCCCHHHHHHHHhhC
Q 039127 118 SIMG-TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 118 ~~~~-~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
..+- .-..+.+..++.++....+.+.
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~I 195 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAI 195 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHH
Confidence 3322 2236889999999988877654
No 44
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=3.3e-06 Score=72.24 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=80.5
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC---------c---------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT---------V--------------- 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~---------~--------------- 74 (162)
-.+++|.+. .+.+++.... -...+.++|..|+||||+|+.+.+... .
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~ 88 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDID 88 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHH
Confidence 478899777 4444444433 346778999999999999988832210 0
Q ss_pred -----e-------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEE-EecCChhhH
Q 039127 75 -----N-------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVI-VTTRNQGVA 117 (162)
Q Consensus 75 -----~-------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-iTTR~~~v~ 117 (162)
. -++|+|+++..+...++.|+..+..-.....+| +||..+.+.
T Consensus 89 ~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 0 489999999888889999988887655555555 455444443
Q ss_pred h-hhCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 118 S-IMGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 118 ~-~~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
. .......+++.+++.++....+.+.
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i 195 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQV 195 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHH
Confidence 2 2333347999999999988777654
No 45
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=3.2e-06 Score=71.89 Aligned_cols=117 Identities=19% Similarity=0.204 Sum_probs=80.4
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc-----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV----------------------- 74 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~----------------------- 74 (162)
.-.+++|++. .+.+.+..+. -...+.++|+.|+||||+|+.+.+...-
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQS 87 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCC
Confidence 4578999998 4444443333 3467889999999999999887543210
Q ss_pred ------------e--------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE-ecCChhhHh-hh
Q 039127 75 ------------N--------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV-TTRNQGVAS-IM 120 (162)
Q Consensus 75 ------------~--------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-TTR~~~v~~-~~ 120 (162)
. -++|+|+++..+...+..|...+........+|+ |+....+.. ..
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 0 4799999997777888888888876555555554 444444432 23
Q ss_pred CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 121 GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 121 ~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.....+++.+++.++....+...
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~i 190 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSI 190 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHH
Confidence 33346899999999988777654
No 46
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=3.2e-06 Score=72.59 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=81.3
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc-----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV----------------------- 74 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~----------------------- 74 (162)
.-.+++|.+. .+.+.+..+. -...+.++|..|+||||+|+.+.+...-
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRF 87 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCC
Confidence 3478999988 3444443332 2355789999999999999887543210
Q ss_pred ------------e--------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEE-EEecCChhhHhh-h
Q 039127 75 ------------N--------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKV-IVTTRNQGVASI-M 120 (162)
Q Consensus 75 ------------~--------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i-iiTTR~~~v~~~-~ 120 (162)
. -++|+|+++..+...++.|+..+..-....++ ++||....+... .
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH
Confidence 0 48999999988888999998888765555544 455555555432 2
Q ss_pred CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 121 GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 121 ~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.....|++.+|+.++....+.+.
T Consensus 168 SRC~~~~f~~Ls~~ei~~~L~~i 190 (647)
T PRK07994 168 SRCLQFHLKALDVEQIRQQLEHI 190 (647)
T ss_pred hhheEeeCCCCCHHHHHHHHHHH
Confidence 23347999999999998887754
No 47
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=2.6e-06 Score=73.40 Aligned_cols=116 Identities=14% Similarity=0.149 Sum_probs=77.9
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC----c--------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT----V-------------------- 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~----~-------------------- 74 (162)
-.+++|.+. .+.+++.... -...+.++|..|+||||+|+.+.+... .
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~ 88 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYV 88 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCcc
Confidence 478999999 4555554433 345778999999999999988755310 0
Q ss_pred ---------e----------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC-hhhHhh-hC
Q 039127 75 ---------N----------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN-QGVASI-MG 121 (162)
Q Consensus 75 ---------~----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~-~~v~~~-~~ 121 (162)
. -++|+|+++..+...+..|+..+.......++|++|.+ ..+... .+
T Consensus 89 DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS 168 (709)
T PRK08691 89 DLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 (709)
T ss_pred ceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH
Confidence 0 48999999977777788888888754445556655543 333222 22
Q ss_pred CCCeeeCCCCCHHHHHHHHhhC
Q 039127 122 TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 122 ~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
....+++.+++.++....+.+.
T Consensus 169 RC~~f~f~~Ls~eeI~~~L~~I 190 (709)
T PRK08691 169 RCLQFVLRNMTAQQVADHLAHV 190 (709)
T ss_pred HHhhhhcCCCCHHHHHHHHHHH
Confidence 2235788899998887777654
No 48
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.39 E-value=1.8e-06 Score=58.93 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.0
Q ss_pred EEEEcCCCcchHHHHHHHHccCCce
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
|.|+|.+|+|||++|+.+++.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~ 25 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP 25 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc
Confidence 5689999999999999999887654
No 49
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.37 E-value=5.2e-06 Score=66.35 Aligned_cols=117 Identities=10% Similarity=0.135 Sum_probs=78.1
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC------------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------------------------ 73 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------------------------ 73 (162)
.-.+++|.+. .+.+++.... -...+.++|.+|+|||++|+.+.....
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 85 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSS 85 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 3467899988 4555444333 345778999999999999977753310
Q ss_pred -----------ce--------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChh-hHh-hh
Q 039127 74 -----------VN--------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQG-VAS-IM 120 (162)
Q Consensus 74 -----------~~--------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~-v~~-~~ 120 (162)
.. -++|+|+++..+...+..+...+........+|++|.+.. +.. ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~ 165 (355)
T TIGR02397 86 LDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATIL 165 (355)
T ss_pred CCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHH
Confidence 00 4889999986666777888888765555666666664433 222 22
Q ss_pred CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 121 GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 121 ~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.....+++.+++.++....+...
T Consensus 166 sr~~~~~~~~~~~~~l~~~l~~~ 188 (355)
T TIGR02397 166 SRCQRFDFKRIPLEDIVERLKKI 188 (355)
T ss_pred hheeEEEcCCCCHHHHHHHHHHH
Confidence 23346889999999888777754
No 50
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=3.1e-06 Score=70.63 Aligned_cols=119 Identities=17% Similarity=0.172 Sum_probs=81.5
Q ss_pred CCCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC------C------------------c
Q 039127 21 SVKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK------T------------------V 74 (162)
Q Consensus 21 ~~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~------~------------------~ 74 (162)
.-.+++|.+. +.+...+..+ .-...+.++|..|+||||+|+.+.... . .
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~ 85 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHP 85 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCC
Confidence 3478899888 3333333322 123478899999999999998886521 0 0
Q ss_pred e-------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE-ecCChhhHhhh-C
Q 039127 75 N-------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV-TTRNQGVASIM-G 121 (162)
Q Consensus 75 ~-------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-TTR~~~v~~~~-~ 121 (162)
. -++|+|+++..+...++.|...+..-.+...+|+ ||..+.+...+ .
T Consensus 86 Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~S 165 (491)
T PRK14964 86 DVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIIS 165 (491)
T ss_pred CEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHH
Confidence 0 4899999998778888899888887666665555 44444544332 3
Q ss_pred CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 122 TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 122 ~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
....+++.+++.++....+.+.+
T Consensus 166 Rc~~~~f~~l~~~el~~~L~~ia 188 (491)
T PRK14964 166 RCQRFDLQKIPTDKLVEHLVDIA 188 (491)
T ss_pred hheeeecccccHHHHHHHHHHHH
Confidence 33478999999998888777654
No 51
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.35 E-value=1e-05 Score=59.16 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=69.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc--------------------------------------e--------------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV--------------------------------------N-------------- 75 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~--------------------------------------~-------------- 75 (162)
...+.++|..|+|||++|+.+.....- .
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 367889999999999999777543210 0
Q ss_pred ----EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh-hhHhh-hCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 76 ----FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ-GVASI-MGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 76 ----~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
-++|+|+++..+...++.|...+....+.+.+|++|++. .+... ......+++.+++.++....+.+.
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence 589999999777778888888887655566676666543 22222 223347999999999999888876
No 52
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=4e-06 Score=70.46 Aligned_cols=114 Identities=12% Similarity=0.084 Sum_probs=78.4
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc------------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV------------------------ 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------------------------ 74 (162)
-.+++|.+. .+.+++.... -...+.++|..|+||||+|+.+.+...-
T Consensus 15 f~divGq~~v~~~L~~~~~~~~------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFP 88 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCc
Confidence 478999998 5555554443 2446789999999999999887653210
Q ss_pred ---------e----------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE-ecCChhhHhhh-C
Q 039127 75 ---------N----------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV-TTRNQGVASIM-G 121 (162)
Q Consensus 75 ---------~----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-TTR~~~v~~~~-~ 121 (162)
+ -++|+|+++..+...++.|+..+.......++|+ ||....+...+ .
T Consensus 89 d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~S 168 (509)
T PRK14958 89 DLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLS 168 (509)
T ss_pred eEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHH
Confidence 0 4899999998888888888888876655665555 44444433222 2
Q ss_pred CCCeeeCCCCCHHHHHHHHh
Q 039127 122 TMPAYELKKLVNDNCLLIFS 141 (162)
Q Consensus 122 ~~~~~~l~~L~~~~~~~lf~ 141 (162)
....+++.+++.++....+.
T Consensus 169 Rc~~~~f~~l~~~~i~~~l~ 188 (509)
T PRK14958 169 RCLQFHLAQLPPLQIAAHCQ 188 (509)
T ss_pred HhhhhhcCCCCHHHHHHHHH
Confidence 23368899999887665544
No 53
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=1.2e-05 Score=65.04 Aligned_cols=69 Identities=7% Similarity=0.081 Sum_probs=51.6
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh-hhHhhh-CCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 76 FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ-GVASIM-GTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
-++|+|+++..+......|...+..-..++.+|++|.+. .+...+ ..-..+.+.+++.++..+++....
T Consensus 143 kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 143 RVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred EEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence 588999999888888888888887655566666666654 333333 223479999999999999998753
No 54
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.32 E-value=3.2e-06 Score=65.15 Aligned_cols=98 Identities=9% Similarity=0.017 Sum_probs=60.9
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC-------ce------------------------------EEEEEeCCCCCC--
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT-------VN------------------------------FNFALDDTWKEK-- 87 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~-------~~------------------------------~LlVlDdv~~~~-- 87 (162)
...-+.++|.+|+||||+|+.+++... .. -+|++|+++...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~ 120 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARG 120 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhccC
Confidence 455677999999999999998864310 00 588999997321
Q ss_pred ------hhhHHHHHhhccccCCCcEEEEecCChhhHh-------hhCC-CCeeeCCCCCHHHHHHHHhhCC
Q 039127 88 ------YVDWTNMRDLFAAVASRSKVIVTTRNQGVAS-------IMGT-MPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 88 ------~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~-------~~~~-~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.+..+.+...+......-.+++++....... .... ...+++++++.++-.+++.+.+
T Consensus 121 ~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 121 GEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred CccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 2344455555544333334555554433211 1111 2358899999999999988664
No 55
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.32 E-value=2.6e-06 Score=69.67 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=62.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC-----ce--------------------------------EEEEEeCCCCCChh-
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT-----VN--------------------------------FNFALDDTWKEKYV- 89 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~-----~~--------------------------------~LlVlDdv~~~~~~- 89 (162)
...+.|+|..|+|||+|++.+++... .. -+|+|||++.....
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCH
Confidence 34678999999999999999876431 11 28999999742211
Q ss_pred -hHHHHHhhccc-cCCCcEEEEecCCh-h--------hHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 90 -DWTNMRDLFAA-VASRSKVIVTTRNQ-G--------VASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 90 -~~~~l~~~l~~-~~~gs~iiiTTR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
..+.+...+.. ...+..+|+||... . +.+.+.....+++.+.+.++-..++.+.+
T Consensus 216 ~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 216 RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 12334443332 13355688877642 1 12222233468999999999999998775
No 56
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.32 E-value=1.9e-06 Score=71.35 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=63.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc---e--------------------------------EEEEEeCCCCCChh--h
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV---N--------------------------------FNFALDDTWKEKYV--D 90 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~---~--------------------------------~LlVlDdv~~~~~~--~ 90 (162)
..-+.|+|..|+|||+|++.+.+.... + -+|++||+...... .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~ 220 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGAT 220 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhh
Confidence 456789999999999999998875321 1 38999998743221 2
Q ss_pred HHHHHhhccc-cCCCcEEEEecCCh---------hhHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 91 WTNMRDLFAA-VASRSKVIVTTRNQ---------GVASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 91 ~~~l~~~l~~-~~~gs~iiiTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.+.+...+.. ...|..||+||... .+.+.+...-.+.+.+++.++...++.+.+
T Consensus 221 qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 221 QEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred HHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 2334433322 12356788888552 122233334578999999999999998765
No 57
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=9e-06 Score=65.39 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=79.9
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc-----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV----------------------- 74 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~----------------------- 74 (162)
....++|.+. .+...+.... -...+.++|..|+||||+|..+.+..--
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 4478899998 4444443333 3457889999999999999755322100
Q ss_pred ------------------------e-----------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcE-
Q 039127 75 ------------------------N-----------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSK- 106 (162)
Q Consensus 75 ------------------------~-----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~- 106 (162)
+ -++|+|+++..+....+.|+..+..-.....
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 0 5889999998888888888888876444444
Q ss_pred EEEecCChhhHhhh-CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 107 VIVTTRNQGVASIM-GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 107 iiiTTR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
|++|++...+...+ ..-..+++.+++.++...++...
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL 212 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHh
Confidence 45555544443322 22347999999999999999874
No 58
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=5.9e-06 Score=72.91 Aligned_cols=117 Identities=13% Similarity=0.093 Sum_probs=81.5
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC---c--------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT---V-------------------- 74 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~---~-------------------- 74 (162)
.-.+++|.+. .|.+.+..+. -...+.++|..|+||||+|+.+.+... .
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGP 86 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCC
Confidence 3468899888 4555554433 235678999999999999988744331 0
Q ss_pred -e---------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE-ecCChhhHhh
Q 039127 75 -N---------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV-TTRNQGVASI 119 (162)
Q Consensus 75 -~---------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-TTR~~~v~~~ 119 (162)
. -++|||+++..+...++.|+..+..-...+.+|+ |+....+...
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred CCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0 4889999998888999999999887655665554 5444445433
Q ss_pred h-CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 120 M-GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 120 ~-~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
+ .....|++..++.++....+.+.
T Consensus 167 IrSRc~~v~F~~l~~~~l~~~L~~i 191 (824)
T PRK07764 167 IRSRTHHYPFRLVPPEVMRGYLERI 191 (824)
T ss_pred HHhheeEEEeeCCCHHHHHHHHHHH
Confidence 3 33347899999988887766653
No 59
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=8.8e-06 Score=69.35 Aligned_cols=117 Identities=13% Similarity=0.116 Sum_probs=81.6
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC------------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------------------------ 73 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------------------------ 73 (162)
.-.+++|.+. .+.+++..+. -...+.++|..|+||||+|+.+.+...
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGR------INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGP 84 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccC
Confidence 3478899888 4555544433 345678999999999999988764321
Q ss_pred --ce-------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEE-EecCChhhHhh
Q 039127 74 --VN-------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVI-VTTRNQGVASI 119 (162)
Q Consensus 74 --~~-------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-iTTR~~~v~~~ 119 (162)
.. -++|+|+++..+...++.|+..+..-.....+| +||..+.+...
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 00 489999999888889999988888655555544 45555554433
Q ss_pred -hCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 120 -MGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 120 -~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
......+++.+++.++....+.+.
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i 189 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARI 189 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHH
Confidence 333457999999998877777553
No 60
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.30 E-value=3.9e-06 Score=69.58 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=65.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC-----ce----------------------------------EEEEEeCCCCCC-
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT-----VN----------------------------------FNFALDDTWKEK- 87 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~-----~~----------------------------------~LlVlDdv~~~~- 87 (162)
..-+.|+|..|+|||+|++.+.+... .+ -+|++||+....
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC
Confidence 34578999999999999999977321 11 389999997432
Q ss_pred -hhhHHHHHhhccc-cCCCcEEEEecCCh---------hhHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 88 -YVDWTNMRDLFAA-VASRSKVIVTTRNQ---------GVASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 88 -~~~~~~l~~~l~~-~~~gs~iiiTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
....+.+...+.. ...|..||+|+... .+.+.+...-++.+++++.++...++.+++
T Consensus 221 k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 221 KEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred CHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence 2223445444443 23455788887643 223334444578899999999999998775
No 61
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3.8e-06 Score=68.60 Aligned_cols=118 Identities=11% Similarity=0.099 Sum_probs=77.5
Q ss_pred CCCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC-------------------------
Q 039127 21 SVKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------------------------- 73 (162)
Q Consensus 21 ~~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------------------------- 73 (162)
.-.+++|.+. +.+...+..+ .-...+.++|+.|+||||+|+.+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~ 88 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCR 88 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHH
Confidence 3468899888 3333333322 2345688999999999999987653220
Q ss_pred ------------------c--e------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEec-CCh
Q 039127 74 ------------------V--N------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTT-RNQ 114 (162)
Q Consensus 74 ------------------~--~------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTT-R~~ 114 (162)
. . -++|+|+++..+...++.+...+....+.+.+|++| +..
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 0 0 489999999777778888888887655566655544 444
Q ss_pred hhHhhhC-CCCeeeCCCCCHHHHHHHHhhC
Q 039127 115 GVASIMG-TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 115 ~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.+...+. ....+++.+++.++....+...
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~ 198 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGI 198 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4433221 1236888999988877666653
No 62
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.29 E-value=5.5e-06 Score=64.70 Aligned_cols=117 Identities=13% Similarity=0.133 Sum_probs=81.2
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
...++.|.+. -+.+.+.. . ..+.+..+|++|.|||+-|..+....--.
T Consensus 34 t~de~~gQe~vV~~L~~a~~~-~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr 106 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR-R------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVR 106 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh-c------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchh
Confidence 4467888888 44455554 2 47788999999999999887765443221
Q ss_pred ------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEE-EEecCChhhHhhhC-CCCeeeCC
Q 039127 76 ------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKV-IVTTRNQGVASIMG-TMPAYELK 129 (162)
Q Consensus 76 ------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i-iiTTR~~~v~~~~~-~~~~~~l~ 129 (162)
-.+|||+++....+.|..|+..+...++.++. +||+--..+...+. .-.-|...
T Consensus 107 ~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk 186 (346)
T KOG0989|consen 107 EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFK 186 (346)
T ss_pred hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCC
Confidence 47899999999999999999998876666654 44543332222211 11248889
Q ss_pred CCCHHHHHHHHhhCC
Q 039127 130 KLVNDNCLLIFSQHP 144 (162)
Q Consensus 130 ~L~~~~~~~lf~~~a 144 (162)
+|.+++...-++..+
T Consensus 187 ~L~d~~iv~rL~~Ia 201 (346)
T KOG0989|consen 187 KLKDEDIVDRLEKIA 201 (346)
T ss_pred CcchHHHHHHHHHHH
Confidence 999988887777665
No 63
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.29 E-value=3.1e-06 Score=70.12 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=64.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC-----ce--------------------------------EEEEEeCCCCCCh--
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT-----VN--------------------------------FNFALDDTWKEKY-- 88 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~-----~~--------------------------------~LlVlDdv~~~~~-- 88 (162)
...+.|+|..|+|||+|++.+.+... .. -+|+|||++....
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCH
Confidence 45678999999999999999886532 11 2899999974211
Q ss_pred hhHHHHHhhccc-cCCCcEEEEecCChh---------hHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 89 VDWTNMRDLFAA-VASRSKVIVTTRNQG---------VASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 89 ~~~~~l~~~l~~-~~~gs~iiiTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
...+.+...+.. ...|..+++||.... +.+.+....++++++.+.++...++.+.+
T Consensus 228 ~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 228 RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 122334443322 123556888876531 22333344579999999999999998875
No 64
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.29 E-value=3.2e-06 Score=66.08 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=59.4
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc-------e------------------------------EEEEEeCCCCC------
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV-------N------------------------------FNFALDDTWKE------ 86 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~-------~------------------------------~LlVlDdv~~~------ 86 (162)
-+.++|.+|.|||++|+.++..... . -+|+||++...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~ 139 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNE 139 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCc
Confidence 4679999999999999554332110 0 57889998622
Q ss_pred ---ChhhHHHHHhhccccCCCcEEEEecCChhhHhhh--C------CCCeeeCCCCCHHHHHHHHhhC
Q 039127 87 ---KYVDWTNMRDLFAAVASRSKVIVTTRNQGVASIM--G------TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 87 ---~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~~~--~------~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
..+.+..|...+.....+.+||.++......... . -...+++.+++.+|-..++.+.
T Consensus 140 ~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~ 207 (284)
T TIGR02880 140 RDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLM 207 (284)
T ss_pred cchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHH
Confidence 2333455666665444455666666543322211 1 0235899999999999998765
No 65
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=9.9e-06 Score=65.32 Aligned_cols=118 Identities=10% Similarity=0.136 Sum_probs=77.4
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc----------e------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV----------N------------ 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~----------~------------ 75 (162)
.-.+++|.+. .+.+.+..+. -.+.+.++|..|+|||++|+.+.+.... .
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNH------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNN 88 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCC
Confidence 4567899998 4444444332 3457889999999999999887654210 0
Q ss_pred ---------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEec-CChhhHh-hhCCCCeeeCCCCC
Q 039127 76 ---------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTT-RNQGVAS-IMGTMPAYELKKLV 132 (162)
Q Consensus 76 ---------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTT-R~~~v~~-~~~~~~~~~l~~L~ 132 (162)
-++++|+++......+..+...+........+|++| ....+.. .......+++.+++
T Consensus 89 ~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~ 168 (367)
T PRK14970 89 SVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRIT 168 (367)
T ss_pred CHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCcc
Confidence 489999998656666777777765434445555444 4333332 22333478999999
Q ss_pred HHHHHHHHhhCC
Q 039127 133 NDNCLLIFSQHP 144 (162)
Q Consensus 133 ~~~~~~lf~~~a 144 (162)
.++....+...+
T Consensus 169 ~~~l~~~l~~~~ 180 (367)
T PRK14970 169 IKDIKEHLAGIA 180 (367)
T ss_pred HHHHHHHHHHHH
Confidence 998887776543
No 66
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=1.1e-05 Score=65.85 Aligned_cols=120 Identities=11% Similarity=0.073 Sum_probs=79.3
Q ss_pred CceeeehH---HHHHHhhcCCCC---CCCCCeEEEEEEcCCCcchHHHHHHHHcc---CC--------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSE---TIDGGFFVIPIIGMGGSGNTTPALPVYND---KT-------------------- 73 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~---~~-------------------- 73 (162)
.+++|.+. .+.+.+..+... ....-...+.++|+.|+|||++|+.+.+. ..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46788877 444444433200 00012467889999999999999887531 10
Q ss_pred --c----------e--------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC-hhhHhhh
Q 039127 74 --V----------N--------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN-QGVASIM 120 (162)
Q Consensus 74 --~----------~--------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~-~~v~~~~ 120 (162)
. . -++++|+++..+......|...+....++..+|++|.+ ..+...+
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHH
Confidence 0 0 47889999988888888888887765556656665555 4444332
Q ss_pred -CCCCeeeCCCCCHHHHHHHHhh
Q 039127 121 -GTMPAYELKKLVNDNCLLIFSQ 142 (162)
Q Consensus 121 -~~~~~~~l~~L~~~~~~~lf~~ 142 (162)
..-..+.+.+++.++....+..
T Consensus 165 rSRc~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 165 RSRCRHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred HhhCeEEECCCCCHHHHHHHHHH
Confidence 2334799999999999888864
No 67
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.27 E-value=3.1e-06 Score=67.89 Aligned_cols=45 Identities=18% Similarity=0.064 Sum_probs=31.8
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHc
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
..++||++ ++...|...- .+.....+.|+|++|+|||++++.+++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~---~~~~~~~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL---RGSRPSNVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH---cCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 47999999 4555543211 112345688999999999999998874
No 68
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=1.1e-05 Score=69.06 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=81.2
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC------c-----e-----------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------V-----N----------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------~-----~----------- 75 (162)
.-.+++|.+. .+.+.+..+. -...+.++|..|+||||+|+.+.+... . .
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i 95 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAI 95 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHH
Confidence 3468999998 4444444333 345788999999999999988854221 0 0
Q ss_pred --------------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE-ecCChhh
Q 039127 76 --------------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV-TTRNQGV 116 (162)
Q Consensus 76 --------------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-TTR~~~v 116 (162)
-++|+|+++..+....+.|...+..-...+.+|+ |+....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 4899999997777888888888876555666554 5444444
Q ss_pred Hhhh-CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 117 ASIM-GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 117 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
...+ .....+++..++.++....+.+.
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i 203 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRI 203 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHH
Confidence 3322 22347899999999888877764
No 69
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1e-05 Score=68.34 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=77.2
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc------------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV------------------------ 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------------------------ 74 (162)
-.+++|.+. .+.+++.... -...+.++|..|+||||+|+.+.....-
T Consensus 15 f~divGq~~v~~~L~~~i~~~~------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~ 88 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFV 88 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 468899998 4444444433 2456789999999999999887533210
Q ss_pred ---------e----------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE-ecCChhhHhhh-C
Q 039127 75 ---------N----------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV-TTRNQGVASIM-G 121 (162)
Q Consensus 75 ---------~----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-TTR~~~v~~~~-~ 121 (162)
. -++|+|+++..+...++.|...+........+|+ ||..+.+...+ .
T Consensus 89 d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~S 168 (527)
T PRK14969 89 DLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 168 (527)
T ss_pred ceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHH
Confidence 0 4899999998888888888888876555555555 44444333211 1
Q ss_pred CCCeeeCCCCCHHHHHHHHhhC
Q 039127 122 TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 122 ~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.-..+++.+++.++....+.+.
T Consensus 169 Rc~~~~f~~l~~~~i~~~L~~i 190 (527)
T PRK14969 169 RCLQFNLKQMPPPLIVSHLQHI 190 (527)
T ss_pred HHHHHhcCCCCHHHHHHHHHHH
Confidence 1235888889888877666543
No 70
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.1e-05 Score=68.90 Aligned_cols=118 Identities=12% Similarity=0.112 Sum_probs=79.6
Q ss_pred CCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc-------------------------
Q 039127 22 VKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV------------------------- 74 (162)
Q Consensus 22 ~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------------------------- 74 (162)
-.+++|.+. +.+....... .-...+.++|..|+||||+|+.+.+...-
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD 89 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD 89 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc
Confidence 467899888 4444434332 23467889999999999999887644310
Q ss_pred --------e----------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEec-CChhhHhh-hCC
Q 039127 75 --------N----------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTT-RNQGVASI-MGT 122 (162)
Q Consensus 75 --------~----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTT-R~~~v~~~-~~~ 122 (162)
. -++|+|+++..+...+..|...+..-.....+|++| ....+... ...
T Consensus 90 v~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SR 169 (624)
T PRK14959 90 VVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSR 169 (624)
T ss_pred eEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhh
Confidence 0 488999999877888888888876544445555544 43444432 222
Q ss_pred CCeeeCCCCCHHHHHHHHhhCC
Q 039127 123 MPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 123 ~~~~~l~~L~~~~~~~lf~~~a 144 (162)
...+++.+++.++....+...+
T Consensus 170 cq~i~F~pLs~~eL~~~L~~il 191 (624)
T PRK14959 170 CQHFTFTRLSEAGLEAHLTKVL 191 (624)
T ss_pred hhccccCCCCHHHHHHHHHHHH
Confidence 3468999999999888777643
No 71
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.24 E-value=3.1e-06 Score=72.09 Aligned_cols=96 Identities=9% Similarity=0.036 Sum_probs=65.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc-----e--------------------------------EEEEEeCCCCCC-hhh
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV-----N--------------------------------FNFALDDTWKEK-YVD 90 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~-----~--------------------------------~LlVlDdv~~~~-~~~ 90 (162)
..+.|+|..|+|||.|++.+++.... + =+|+|||+.... .+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 34789999999999999998875321 1 279999997432 222
Q ss_pred H-HHHHhhccc-cCCCcEEEEecCCh---------hhHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 91 W-TNMRDLFAA-VASRSKVIVTTRNQ---------GVASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 91 ~-~~l~~~l~~-~~~gs~iiiTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
| +.|...+.. ...|..||+||... .+.+.+...-+++|.+.+.+.-..++.+++
T Consensus 395 tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 395 TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 3 234443332 23356688888762 233344455578999999999999998875
No 72
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.23 E-value=5.2e-06 Score=67.59 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=69.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce------------------------------------EEEEEeCCCCCC-hh
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------------------FNFALDDTWKEK-YV 89 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------------------~LlVlDdv~~~~-~~ 89 (162)
....+.|||..|+|||.|++++.+..... =++++||++... .+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~ 191 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKE 191 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCCh
Confidence 46788899999999999999997765332 189999997421 11
Q ss_pred h-HHHHHhhccc-cCCCcEEEEecCCh---------hhHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 90 D-WTNMRDLFAA-VASRSKVIVTTRNQ---------GVASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 90 ~-~~~l~~~l~~-~~~gs~iiiTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
. .+.+...|.. ...|..||+|++.. .+.+.+.+.-.+++.+++.+....++.+.+
T Consensus 192 ~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 192 RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 2 2334444433 23345899999652 344555566689999999999999998854
No 73
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.23 E-value=6.4e-06 Score=73.13 Aligned_cols=111 Identities=11% Similarity=0.138 Sum_probs=68.7
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc----------e-------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV----------N------------- 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~----------~------------- 75 (162)
...++||+. .+++.|.... ..-+.++|.+|+|||++|+.+.++... +
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~-------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~ 258 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR-------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGA 258 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC-------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccc
Confidence 468899999 5555555544 334569999999999999988765310 0
Q ss_pred -----------------------EEEEEeCCCCCCh-----hhHH---HHHhhccccCCCc-EEEEecCChhhH------
Q 039127 76 -----------------------FNFALDDTWKEKY-----VDWT---NMRDLFAAVASRS-KVIVTTRNQGVA------ 117 (162)
Q Consensus 76 -----------------------~LlVlDdv~~~~~-----~~~~---~l~~~l~~~~~gs-~iiiTTR~~~v~------ 117 (162)
.+|++|+++.... ...+ .|++.+ .+|. ++|-+|......
T Consensus 259 ~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~IgaTT~~e~~~~~~~d 335 (852)
T TIGR03345 259 SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRTIAATTWAEYKKYFEKD 335 (852)
T ss_pred ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEEEEecCHHHHhhhhhcc
Confidence 7899999874210 1111 233333 3343 455555443221
Q ss_pred -hhhCCCCeeeCCCCCHHHHHHHHhh
Q 039127 118 -SIMGTMPAYELKKLVNDNCLLIFSQ 142 (162)
Q Consensus 118 -~~~~~~~~~~l~~L~~~~~~~lf~~ 142 (162)
.....-..+.+.+++.++...+|+.
T Consensus 336 ~AL~rRf~~i~v~eps~~~~~~iL~~ 361 (852)
T TIGR03345 336 PALTRRFQVVKVEEPDEETAIRMLRG 361 (852)
T ss_pred HHHHHhCeEEEeCCCCHHHHHHHHHH
Confidence 1122334799999999999999753
No 74
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.22 E-value=8.6e-06 Score=71.34 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=68.7
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC----------ce-------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT----------VN------------- 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~----------~~------------- 75 (162)
...++||++ .+++.|.... ..-+.++|.+|+|||++|+.++++.. .+
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~-------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~ 253 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRK-------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGT 253 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCC-------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhc
Confidence 357899999 5665554443 33456999999999999998876531 00
Q ss_pred ----------------------EEEEEeCCCCCC---------hhhHHHHHhhccccCCCc-EEEEecCChhhH------
Q 039127 76 ----------------------FNFALDDTWKEK---------YVDWTNMRDLFAAVASRS-KVIVTTRNQGVA------ 117 (162)
Q Consensus 76 ----------------------~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs-~iiiTTR~~~v~------ 117 (162)
.+|++|+++... .+..+.|+..+. .|. ++|-+|...+..
T Consensus 254 ~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d 330 (731)
T TIGR02639 254 KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEEYKNHFEKD 330 (731)
T ss_pred cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHHHHHHhhhh
Confidence 689999987321 122333444333 333 334443332211
Q ss_pred -hhhCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 118 -SIMGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 118 -~~~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.....-..+++.+++.++...+++..
T Consensus 331 ~al~rRf~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 331 RALSRRFQKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred HHHHHhCceEEeCCCCHHHHHHHHHHH
Confidence 11122346899999999999999853
No 75
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.21 E-value=3e-06 Score=57.94 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+.+.|+|.+|+|||++++.+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999998764
No 76
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.20 E-value=8.5e-06 Score=70.03 Aligned_cols=43 Identities=23% Similarity=0.163 Sum_probs=31.7
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHc
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
..++++|++. .+...+... ....+.|+|.+|+||||||+.+++
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~-------~~~~vlL~Gp~GtGKTTLAr~i~~ 197 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASP-------FPQHIILYGPPGVGKTTAARLALE 197 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcC-------CCCeEEEECCCCCCHHHHHHHHHH
Confidence 3467899988 454444322 245688999999999999998864
No 77
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.5e-05 Score=67.09 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=78.9
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC---------------c--------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT---------------V-------- 74 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~---------------~-------- 74 (162)
.-.+++|.+. .+.+.+..+. -...+.++|..|+||||+|+.+.+... .
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~r------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC 87 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDR------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESC 87 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHH
Confidence 3478899888 4444443333 345688999999999999977653220 0
Q ss_pred -----------------e-----------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEE-EecCC
Q 039127 75 -----------------N-----------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVI-VTTRN 113 (162)
Q Consensus 75 -----------------~-----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-iTTR~ 113 (162)
. -++|+|+++..+...++.|...+..-...+.+| +|++.
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 0 489999999777778888888887655555544 45444
Q ss_pred hhhHhh-hCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 114 QGVASI-MGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 114 ~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
..+... ......+++.+++.++....+.+.
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i 198 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMI 198 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHH
Confidence 444432 334457999999998877666543
No 78
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=1.7e-05 Score=65.88 Aligned_cols=117 Identities=11% Similarity=0.126 Sum_probs=77.7
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC------------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------------------------ 73 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------------------------ 73 (162)
.-.+++|.+. .+.+.+..+. -...+.++|..|+|||++|+.+.+...
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~ 88 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNR------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGT 88 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCC
Confidence 3578999888 4444444332 246778999999999999988754210
Q ss_pred ------------c--e------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEec-CChhhHhh-
Q 039127 74 ------------V--N------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTT-RNQGVASI- 119 (162)
Q Consensus 74 ------------~--~------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTT-R~~~v~~~- 119 (162)
. . -++|+|+++..+....+.|...+........+|++| +...+...
T Consensus 89 ~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI 168 (451)
T PRK06305 89 SLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTI 168 (451)
T ss_pred CCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHH
Confidence 0 0 588999998766677777888877654555565555 33333322
Q ss_pred hCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 120 MGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 120 ~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
......+++.+++.++....+.+.
T Consensus 169 ~sRc~~v~f~~l~~~el~~~L~~~ 192 (451)
T PRK06305 169 LSRCQKMHLKRIPEETIIDKLALI 192 (451)
T ss_pred HHhceEEeCCCCCHHHHHHHHHHH
Confidence 223347899999999887776654
No 79
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.16 E-value=1.8e-05 Score=68.89 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=76.6
Q ss_pred CceeeehHHHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce---------------------------
Q 039127 23 KLWLGREEGTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN--------------------------- 75 (162)
Q Consensus 23 ~~~vGr~~~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--------------------------- 75 (162)
...+-|.. +++.|.... +.+.+.|.-++|.|||||+-.........
T Consensus 19 ~~~v~R~r-L~~~L~~~~------~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 19 DNYVVRPR-LLDRLRRAN------DYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred ccccccHH-HHHHHhcCC------CceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 34444555 777777654 68999999999999999998886422222
Q ss_pred ---------------------------------------EEEEEeCCCCC-ChhhHHHHHhhccccCCCcEEEEecCChh
Q 039127 76 ---------------------------------------FNFALDDTWKE-KYVDWTNMRDLFAAVASRSKVIVTTRNQG 115 (162)
Q Consensus 76 ---------------------------------------~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iiiTTR~~~ 115 (162)
..+||||.+-. ++.-...+...+.....+-.+++|||+..
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 69999998743 33333445555555667889999999964
Q ss_pred hHhhh---CCCCeee----CCCCCHHHHHHHHhhCC
Q 039127 116 VASIM---GTMPAYE----LKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 116 v~~~~---~~~~~~~----l~~L~~~~~~~lf~~~a 144 (162)
-.... -....++ .-.++.+|+-.+|....
T Consensus 172 ~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 172 QLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred CCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 32211 1112222 23478999999998763
No 80
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.16 E-value=1.6e-05 Score=64.85 Aligned_cols=99 Identities=17% Similarity=0.109 Sum_probs=63.1
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC-------
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE------- 86 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~------- 86 (162)
..+-+.++|.+|+|||++|+.+++..... .+|+||+++..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~ 243 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDS 243 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccC
Confidence 34567899999999999999998755432 58899998732
Q ss_pred ----ChhhHHHHHhhccc-----cCCCcEEEEecCChhhH-h-hhC---CCCeeeCCCCCHHHHHHHHhhCCC
Q 039127 87 ----KYVDWTNMRDLFAA-----VASRSKVIVTTRNQGVA-S-IMG---TMPAYELKKLVNDNCLLIFSQHPS 145 (162)
Q Consensus 87 ----~~~~~~~l~~~l~~-----~~~gs~iiiTTR~~~v~-~-~~~---~~~~~~l~~L~~~~~~~lf~~~af 145 (162)
+.+.+..+...+.. ...+..||.||...+.. . ... -...+++...+.++..++|+.+..
T Consensus 244 ~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 244 GTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 11222233333211 11244677777654322 1 111 133689999999999999987653
No 81
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2.6e-05 Score=66.76 Aligned_cols=118 Identities=9% Similarity=0.124 Sum_probs=78.3
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC------------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------------------------ 73 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------------------------ 73 (162)
.-.+++|.+. .+.+++.... -...+.++|..|+||||+|+.+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGR------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCC
Confidence 3478999888 3444444333 345677999999999999988753210
Q ss_pred ----------ce----------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEec-CChhhHhhh
Q 039127 74 ----------VN----------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTT-RNQGVASIM 120 (162)
Q Consensus 74 ----------~~----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTT-R~~~v~~~~ 120 (162)
.. -++|+|+++..+.+.++.|...+........+|+++ ....+...+
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 00 589999998777777888888877655566555554 333333322
Q ss_pred -CCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 121 -GTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 121 -~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.....+.+..++.++....+.+.+
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a 192 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIA 192 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHH
Confidence 223468888888888777666543
No 82
>CHL00181 cbbX CbbX; Provisional
Probab=98.14 E-value=1.6e-05 Score=62.25 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=61.8
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC----------ce---------------------------EEEEEeCCCCC------
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT----------VN---------------------------FNFALDDTWKE------ 86 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~----------~~---------------------------~LlVlDdv~~~------ 86 (162)
.+.++|.+|+|||++|+.+++... .. -+|++|++...
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~ 140 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNE 140 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCc
Confidence 467899999999999999954321 00 47899999631
Q ss_pred ---ChhhHHHHHhhccccCCCcEEEEecCChhhHhhh-------C-CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 87 ---KYVDWTNMRDLFAAVASRSKVIVTTRNQGVASIM-------G-TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 87 ---~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~~~-------~-~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
..+....|...+........||.++....+.... . -...+++.+++.++..+++.+.+
T Consensus 141 ~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 141 RDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred cchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence 2334455555555444455677777544332211 1 12368999999999998887654
No 83
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=4.2e-05 Score=64.56 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=80.5
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC-----c------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT-----V------------------ 74 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-----~------------------ 74 (162)
.-.+++|.+. .+...+-... -...+.++|..|+||||+|+.+.+..- .
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~gr------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNR------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRH 85 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCC
Confidence 3478999887 4444443332 345778999999999999987654320 0
Q ss_pred --------------e------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh-hhHh-hh
Q 039127 75 --------------N------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ-GVAS-IM 120 (162)
Q Consensus 75 --------------~------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~-~v~~-~~ 120 (162)
. -++|+|+++..+.+.++.|+..+..-...+.+|++|.+. .+.. ..
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~ 165 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL 165 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH
Confidence 0 489999999888888999988887665666666655442 2222 22
Q ss_pred CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 121 GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 121 ~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.....+++.+++.++....+.+.
T Consensus 166 SRc~~~~F~~Ls~~ei~~~L~~I 188 (535)
T PRK08451 166 SRTQHFRFKQIPQNSIISHLKTI 188 (535)
T ss_pred hhceeEEcCCCCHHHHHHHHHHH
Confidence 22347899999999887777643
No 84
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=1.3e-05 Score=66.34 Aligned_cols=97 Identities=14% Similarity=0.038 Sum_probs=62.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc-----e---------------------------------EEEEEeCCCCC-Ch
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV-----N---------------------------------FNFALDDTWKE-KY 88 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~-----~---------------------------------~LlVlDdv~~~-~~ 88 (162)
..-+.|+|.+|+|||+|++.+++.... + -+|++||++.. +.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 345889999999999999988875311 1 27999999732 11
Q ss_pred hh-HHHHHhhccc-cCCCcEEEEecCC-hh--------hHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 89 VD-WTNMRDLFAA-VASRSKVIVTTRN-QG--------VASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 89 ~~-~~~l~~~l~~-~~~gs~iiiTTR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.. .+.+...+.. ...|..+|+||.. .. +.+.+...-++.+++.+.+.-..++++.+
T Consensus 210 ~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 11 1234333322 1235578888753 22 11223334478899999999999998775
No 85
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.13 E-value=2.6e-05 Score=65.99 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=73.2
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHcc-------C-C-ce-------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYND-------K-T-VN------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~-------~-~-~~------------- 75 (162)
+-.+++|.+. .+...+.... ..-+.|+|.+|+|||++|+.+++. . . ..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~-------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~ 135 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPN-------PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFD 135 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCC-------CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCC
Confidence 3357999988 4444443332 334569999999999999988631 0 0 00
Q ss_pred -----------------------------------------EEEEEeCCCCCChhhHHHHHhhcccc-------------
Q 039127 76 -----------------------------------------FNFALDDTWKEKYVDWTNMRDLFAAV------------- 101 (162)
Q Consensus 76 -----------------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~------------- 101 (162)
=.|+||++...+...+..|...+...
T Consensus 136 ~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~ 215 (531)
T TIGR02902 136 ERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSEN 215 (531)
T ss_pred ccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccC
Confidence 17888999887788888877655321
Q ss_pred ---------------CCCcEEEE-ecCChh-hHh-hhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 102 ---------------ASRSKVIV-TTRNQG-VAS-IMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 102 ---------------~~gs~iii-TTR~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
....++|. ||++.. +.. .......+.+.+|+.++-..++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 216 PNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred cccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHH
Confidence 01125554 455432 111 11222357899999999888888754
No 86
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=2.4e-05 Score=66.76 Aligned_cols=115 Identities=12% Similarity=0.134 Sum_probs=78.2
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC----c--------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT----V-------------------- 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~----~-------------------- 74 (162)
-.+++|.+. .+.+.+..+. -...+.++|..|+||||+|+.+.+... .
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~ 88 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR------VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSV 88 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCC
Confidence 468999988 4555554433 345678999999999999987754321 0
Q ss_pred -----e--------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEE-EecCChhhHhhh-C
Q 039127 75 -----N--------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVI-VTTRNQGVASIM-G 121 (162)
Q Consensus 75 -----~--------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-iTTR~~~v~~~~-~ 121 (162)
. -++|+|+++..+...++.|...+..-.....+| +||..+.+...+ .
T Consensus 89 d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~S 168 (576)
T PRK14965 89 DVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILS 168 (576)
T ss_pred CeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHH
Confidence 0 478999999878888888888887655555554 555555554332 2
Q ss_pred CCCeeeCCCCCHHHHHHHHhh
Q 039127 122 TMPAYELKKLVNDNCLLIFSQ 142 (162)
Q Consensus 122 ~~~~~~l~~L~~~~~~~lf~~ 142 (162)
....+++.+++.++....+..
T Consensus 169 Rc~~~~f~~l~~~~i~~~L~~ 189 (576)
T PRK14965 169 RCQRFDFRRIPLQKIVDRLRY 189 (576)
T ss_pred hhhhhhcCCCCHHHHHHHHHH
Confidence 234678888888877666654
No 87
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=3.3e-05 Score=66.35 Aligned_cols=117 Identities=12% Similarity=0.137 Sum_probs=82.2
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC------------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------------------------ 73 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------------------------ 73 (162)
.-.+++|.+. .+.+++..+. -...+.++|..|+||||+|+.+.....
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~ 88 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNK------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQR 88 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCC
Confidence 3468899888 5555554433 345688999999999999987654321
Q ss_pred --------------ce------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE-ecCChhhHhhh
Q 039127 74 --------------VN------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV-TTRNQGVASIM 120 (162)
Q Consensus 74 --------------~~------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-TTR~~~v~~~~ 120 (162)
+. -++|+|+++..+...++.|...+..-...+.+|+ |++...+...+
T Consensus 89 ~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI 168 (614)
T PRK14971 89 SYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTI 168 (614)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHH
Confidence 00 4899999998888889999988886555665544 55555544333
Q ss_pred -CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 121 -GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 121 -~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.....+++.+++.++....+.+.
T Consensus 169 ~SRc~iv~f~~ls~~ei~~~L~~i 192 (614)
T PRK14971 169 LSRCQIFDFNRIQVADIVNHLQYV 192 (614)
T ss_pred HhhhheeecCCCCHHHHHHHHHHH
Confidence 33447999999999988777653
No 88
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.09 E-value=1.4e-05 Score=70.85 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=32.6
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..++||++ .+++.|.... ..-+.++|.+|+|||++|+.++...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~-------~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT-------KNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc-------cCCeEEECCCCCCHHHHHHHHHHHH
Confidence 56899999 6666665544 2344699999999999998887653
No 89
>PRK08116 hypothetical protein; Validated
Probab=98.09 E-value=5.1e-06 Score=64.44 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=44.2
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce--------------------------------------EEEEEeCCCCCChhhH
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN--------------------------------------FNFALDDTWKEKYVDW 91 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~--------------------------------------~LlVlDdv~~~~~~~~ 91 (162)
-+.++|..|+|||+||..+++....+ =||||||+.......|
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~ 195 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEW 195 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHH
Confidence 47799999999999999998763211 4899999953333444
Q ss_pred H--HHHhhccc-cCCCcEEEEecCCh
Q 039127 92 T--NMRDLFAA-VASRSKVIVTTRNQ 114 (162)
Q Consensus 92 ~--~l~~~l~~-~~~gs~iiiTTR~~ 114 (162)
. .+...+.. ...+..+|+||...
T Consensus 196 ~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 196 AREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3 34444432 23466799999764
No 90
>PRK08181 transposase; Validated
Probab=98.09 E-value=3.6e-06 Score=65.27 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=42.1
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC-----ce------------------------------EEEEEeCCCCCChhhH--H
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT-----VN------------------------------FNFALDDTWKEKYVDW--T 92 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~-----~~------------------------------~LlVlDdv~~~~~~~~--~ 92 (162)
-+.++|.+|+|||.||..+.+... +. -|||+||+.......| .
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~ 187 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETS 187 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHH
Confidence 578999999999999998864321 11 4899999964333233 2
Q ss_pred HHHhhccccCCCcEEEEecCCh
Q 039127 93 NMRDLFAAVASRSKVIVTTRNQ 114 (162)
Q Consensus 93 ~l~~~l~~~~~gs~iiiTTR~~ 114 (162)
.+...+........+||||...
T Consensus 188 ~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 188 VLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHHHHHHHHhCCCEEEEcCCC
Confidence 3444444322224589998774
No 91
>PRK06526 transposase; Provisional
Probab=98.07 E-value=4.3e-06 Score=64.37 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=41.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce-----------------------------------EEEEEeCCCCCChhhH--
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN-----------------------------------FNFALDDTWKEKYVDW-- 91 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-----------------------------------~LlVlDdv~~~~~~~~-- 91 (162)
..+.++|.+|+|||+||..+.+..... -+||+||+.......+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~~ 178 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAA 178 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHHH
Confidence 457899999999999999875532211 4899999974322222
Q ss_pred HHHHhhccc-cCCCcEEEEecCCh
Q 039127 92 TNMRDLFAA-VASRSKVIVTTRNQ 114 (162)
Q Consensus 92 ~~l~~~l~~-~~~gs~iiiTTR~~ 114 (162)
+.+...+.. ..+++ +|+||...
T Consensus 179 ~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 179 NLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred HHHHHHHHHHHhcCC-EEEEcCCC
Confidence 234444332 22344 88888774
No 92
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=5.5e-05 Score=63.38 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=78.2
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC------------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------------------------ 73 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------------------------ 73 (162)
.-.+++|.+. .+.+++.... -...+.++|..|+||||+|+.++....
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~ 87 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQR------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSF 87 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCC
Confidence 3467889988 4555554433 345677899999999999988754321
Q ss_pred -----------c-----e---------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE-ecCChhhHhh-h
Q 039127 74 -----------V-----N---------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV-TTRNQGVASI-M 120 (162)
Q Consensus 74 -----------~-----~---------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-TTR~~~v~~~-~ 120 (162)
. + -++|+|+++..+...++.|...+........+|+ ||+...+... .
T Consensus 88 ~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~ 167 (486)
T PRK14953 88 PDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTIL 167 (486)
T ss_pred CcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHH
Confidence 0 0 4889999987777778888888776544554544 4444443322 2
Q ss_pred CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 121 GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 121 ~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.....+++.+++.++....+.+.
T Consensus 168 SRc~~i~f~~ls~~el~~~L~~i 190 (486)
T PRK14953 168 SRCQRFIFSKPTKEQIKEYLKRI 190 (486)
T ss_pred HhceEEEcCCCCHHHHHHHHHHH
Confidence 23346889999998877766653
No 93
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.07 E-value=3.1e-06 Score=61.10 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=27.9
Q ss_pred ceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 24 LWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 24 ~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.|+||++ ++...|. . ......+.+.|+|.+|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~--~--~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD--A--AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTG--G--TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--H--HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3799999 4444442 2 234556899999999999999999887766554
No 94
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.05 E-value=8.9e-06 Score=71.68 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=31.1
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..+.||++ +|...|...- .+.....++.|+|.+|.|||++++.+.+.
T Consensus 755 D~LPhREeEIeeLasfL~paI--kgsgpnnvLYIyG~PGTGKTATVK~VLrE 804 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGI--KQSGSNQILYISGMPGTGKTATVYSVIQL 804 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHH--hcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 57889999 3333332211 01123356789999999999999988643
No 95
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.04 E-value=2.6e-06 Score=62.17 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=39.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce-----------------------------------EEEEEeCCCCCChhhHH
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN-----------------------------------FNFALDDTWKEKYVDWT 92 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----------------------------------~LlVlDdv~~~~~~~~~ 92 (162)
..-+.++|..|+|||.||..+.+....+ =||||||+-......|.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~~~~~~ 126 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEPLSEWE 126 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS---HHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceeeecccc
Confidence 3468899999999999998886543222 58999999754444443
Q ss_pred H--HHhhcccc-CCCcEEEEecCCh
Q 039127 93 N--MRDLFAAV-ASRSKVIVTTRNQ 114 (162)
Q Consensus 93 ~--l~~~l~~~-~~gs~iiiTTR~~ 114 (162)
. +...+... .+. .+||||...
T Consensus 127 ~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 127 AELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp HHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cccchhhhhHhhccc-CeEeeCCCc
Confidence 2 22222221 223 588888764
No 96
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=6.3e-05 Score=64.05 Aligned_cols=118 Identities=8% Similarity=0.046 Sum_probs=81.5
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC------------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------------------------ 73 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------------------------ 73 (162)
.-.+++|.+. .+.+++.... -...+.++|..|+||||+|+.+.+..-
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNK------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNS 87 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCC
Confidence 3478999888 5555554433 355788999999999999988865321
Q ss_pred -----------ce--------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEec-CChhhHhh-h
Q 039127 74 -----------VN--------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTT-RNQGVASI-M 120 (162)
Q Consensus 74 -----------~~--------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTT-R~~~v~~~-~ 120 (162)
.. -++|+|+++..+...++.|...+..-.....+|++| ....+... .
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 00 489999999878888888888887655555555544 43444332 2
Q ss_pred CCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 121 GTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 121 ~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.....+++.+++.++....+...+
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~ 191 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVC 191 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHH
Confidence 233468899999888877776544
No 97
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=6e-05 Score=64.20 Aligned_cols=117 Identities=10% Similarity=0.131 Sum_probs=78.8
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC---c--------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT---V-------------------- 74 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~---~-------------------- 74 (162)
.-.+++|.+. .+.+.+.... -...+.++|..|+|||++|+.+....- .
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSL 87 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCC
Confidence 3578999998 4555554433 346677899999999999988744321 0
Q ss_pred -----------e---------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEE-EEecCChhhHhhh-
Q 039127 75 -----------N---------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKV-IVTTRNQGVASIM- 120 (162)
Q Consensus 75 -----------~---------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i-iiTTR~~~v~~~~- 120 (162)
. -++|+|+++..+...+..|...+..-.....+ +.||....+...+
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 0 58899999977778888888887754444444 4455544443322
Q ss_pred CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 121 GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 121 ~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.....+++.+++.++....+...
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i 190 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYI 190 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHH
Confidence 23346888899988887777654
No 98
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.03 E-value=4.6e-05 Score=54.74 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=38.5
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChh-hHhhh-CCCCeeeCCCCC
Q 039127 76 FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQG-VASIM-GTMPAYELKKLV 132 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~-v~~~~-~~~~~~~l~~L~ 132 (162)
-++|+|+++..+.+.+..|+..+..-...+.+|++|.+.. +...+ ..-..+.+.+||
T Consensus 104 KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 104 KVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred eEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 5899999999999999999999988777888888877754 33333 333457776664
No 99
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=8.3e-05 Score=64.65 Aligned_cols=116 Identities=10% Similarity=0.164 Sum_probs=80.0
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC----C--------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK----T-------------------- 73 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~----~-------------------- 73 (162)
.-.+++|.+. .+.+.+.... -...+.++|+.|+|||++|+.++... .
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~r------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dv 89 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNK------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDI 89 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcE
Confidence 3468899888 4555554433 35677899999999999998875321 0
Q ss_pred ----------c---e---------------EEEEEeCCCCCChhhHHHHHhhccccCCCcE-EEEecCChhhHhh-hCCC
Q 039127 74 ----------V---N---------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSK-VIVTTRNQGVASI-MGTM 123 (162)
Q Consensus 74 ----------~---~---------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~-iiiTTR~~~v~~~-~~~~ 123 (162)
+ + -++|+|+++..+...+..|+..+..-..... |++|++...+... ....
T Consensus 90 ieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRc 169 (725)
T PRK07133 90 IEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRV 169 (725)
T ss_pred EEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhc
Confidence 0 0 4899999998788888888888776444544 4455555555432 3333
Q ss_pred CeeeCCCCCHHHHHHHHhh
Q 039127 124 PAYELKKLVNDNCLLIFSQ 142 (162)
Q Consensus 124 ~~~~l~~L~~~~~~~lf~~ 142 (162)
..+++.+++.++....+..
T Consensus 170 q~ieF~~L~~eeI~~~L~~ 188 (725)
T PRK07133 170 QRFNFRRISEDEIVSRLEF 188 (725)
T ss_pred eeEEccCCCHHHHHHHHHH
Confidence 4799999999998877765
No 100
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=6.8e-05 Score=64.55 Aligned_cols=115 Identities=12% Similarity=0.179 Sum_probs=76.5
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc------------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV------------------------ 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------------------------ 74 (162)
-.+++|.+. .+.+++.... -...+.++|..|+||||+|+.+++...-
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGN 88 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCC
Confidence 467889888 4444444432 2356789999999999999887543210
Q ss_pred -------e--------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEE-EecCChhhHhhh
Q 039127 75 -------N--------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVI-VTTRNQGVASIM 120 (162)
Q Consensus 75 -------~--------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-iTTR~~~v~~~~ 120 (162)
. -++|+|+++..+.+.+..|+..+..-.....+| +|+....+...+
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 0 489999999888888889988887644445444 454434333322
Q ss_pred -CCCCeeeCCCCCHHHHHHHHhh
Q 039127 121 -GTMPAYELKKLVNDNCLLIFSQ 142 (162)
Q Consensus 121 -~~~~~~~l~~L~~~~~~~lf~~ 142 (162)
.....+++..++.++....+.+
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHH
Confidence 2234678888888887766654
No 101
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.00 E-value=0.00011 Score=64.59 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=76.3
Q ss_pred CceeeehH---HHHHHhhcCCCC--CCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSE--TIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
..++|.+. .+.+.+.....- ..+....++.++|+.|+|||+||+.++......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 56788888 444444421100 011234567899999999999999886544211
Q ss_pred ---------------------EEEEEeCCCCCChhhHHHHHhhcccc----C-------CCcEEEEecCChh--h-----
Q 039127 76 ---------------------FNFALDDTWKEKYVDWTNMRDLFAAV----A-------SRSKVIVTTRNQG--V----- 116 (162)
Q Consensus 76 ---------------------~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iiiTTR~~~--v----- 116 (162)
.+++||+++..+++.+..|...+..+ . ..+.+|.||.... +
T Consensus 534 ~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~ 613 (731)
T TIGR02639 534 PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPI 613 (731)
T ss_pred CCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccC
Confidence 59999999988888888888877543 1 1234666663310 0
Q ss_pred ---------------Hh-----hhCC-CCeeeCCCCCHHHHHHHHhhC
Q 039127 117 ---------------AS-----IMGT-MPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 117 ---------------~~-----~~~~-~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.. ..+. +.++.+.+|+.++...++...
T Consensus 614 ~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~ 661 (731)
T TIGR02639 614 GFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKF 661 (731)
T ss_pred CcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHH
Confidence 00 1111 347889999999888887653
No 102
>PRK09183 transposase/IS protein; Provisional
Probab=97.98 E-value=8.6e-06 Score=62.87 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=41.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC-----Cce-------------------------------EEEEEeCCCCCChhhH-
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK-----TVN-------------------------------FNFALDDTWKEKYVDW- 91 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~-----~~~-------------------------------~LlVlDdv~~~~~~~~- 91 (162)
..+.|+|.+|+|||+||..+.+.. .+. -++|+||+.......+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~~~ 182 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEE 182 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCChHH
Confidence 457799999999999999885432 111 4899999974322222
Q ss_pred -HHHHhhcccc-CCCcEEEEecCCh
Q 039127 92 -TNMRDLFAAV-ASRSKVIVTTRNQ 114 (162)
Q Consensus 92 -~~l~~~l~~~-~~gs~iiiTTR~~ 114 (162)
+.+...+... .+++ +|+||...
T Consensus 183 ~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 183 ANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred HHHHHHHHHHHHhcCc-EEEecCCC
Confidence 2344444332 2344 88888763
No 103
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.98 E-value=2.6e-05 Score=68.36 Aligned_cols=113 Identities=15% Similarity=0.165 Sum_probs=68.0
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc----------e--------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV----------N-------------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~----------~-------------- 75 (162)
..++||++ .+++.|.... ..-+.++|.+|+|||++|+.+++.... .
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~-------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~ 258 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR-------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTK 258 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC-------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccc
Confidence 46899999 5666555533 223458999999999999988754200 0
Q ss_pred ---------------------EEEEEeCCCCC--------ChhhHHHHHhhccccCCCcEEEEecCChhhHh-------h
Q 039127 76 ---------------------FNFALDDTWKE--------KYVDWTNMRDLFAAVASRSKVIVTTRNQGVAS-------I 119 (162)
Q Consensus 76 ---------------------~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~-------~ 119 (162)
.+|++|+++.. .......+..++...+ .-++|-+|....... .
T Consensus 259 ~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~D~AL 337 (758)
T PRK11034 259 YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhccHHH
Confidence 68999998731 1122222333333222 224444444333211 1
Q ss_pred hCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 120 MGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 120 ~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
...-+.+.+++++.++...++...
T Consensus 338 ~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 338 ARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHH
Confidence 122346999999999999999853
No 104
>PRK12377 putative replication protein; Provisional
Probab=97.98 E-value=1.1e-05 Score=61.80 Aligned_cols=65 Identities=17% Similarity=0.079 Sum_probs=43.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce------------------------------------EEEEEeCCCCCChhhH-
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN------------------------------------FNFALDDTWKEKYVDW- 91 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------------------~LlVlDdv~~~~~~~~- 91 (162)
..+.++|.+|+|||+||..+.+....+ -||||||+.......|
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~ 181 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNE 181 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHH
Confidence 568899999999999999987765322 4899999953333333
Q ss_pred -HHHHhhcccc-CCCcEEEEecCC
Q 039127 92 -TNMRDLFAAV-ASRSKVIVTTRN 113 (162)
Q Consensus 92 -~~l~~~l~~~-~~gs~iiiTTR~ 113 (162)
+.|...+... .+...+||||..
T Consensus 182 ~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 182 QVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3344444432 223457888865
No 105
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.95 E-value=1.7e-05 Score=55.26 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=50.4
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce----------------------EEEEEeCCCCCChhhHHHHHhhcccc-CCCcE
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN----------------------FNFALDDTWKEKYVDWTNMRDLFAAV-ASRSK 106 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ 106 (162)
-|.|+|..|+||+++|+.++...... -.++|+|++..+......+...+... ....|
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~R 102 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVR 102 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSE
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeE
Confidence 45699999999999999998765543 47789999987888888888887753 45679
Q ss_pred EEEecCCh
Q 039127 107 VIVTTRNQ 114 (162)
Q Consensus 107 iiiTTR~~ 114 (162)
+|.||...
T Consensus 103 lI~ss~~~ 110 (138)
T PF14532_consen 103 LIASSSQD 110 (138)
T ss_dssp EEEEECC-
T ss_pred EEEEeCCC
Confidence 99998754
No 106
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.95 E-value=4.5e-05 Score=67.92 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=31.1
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..++||+. .+++.|.... ...+.++|.+|+|||++|+.+.++
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~-------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT-------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC-------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 56899999 5555554433 334558999999999999887765
No 107
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.95 E-value=5.8e-05 Score=67.20 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=32.9
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...++||+. .+++.|.... ...+.++|.+|+|||+||+.+....
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~-------~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRT-------KNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCC-------cCceEEECCCCCCHHHHHHHHHHHh
Confidence 357899999 5555555443 3355699999999999998887654
No 108
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.94 E-value=5.1e-05 Score=57.85 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=57.0
Q ss_pred CCCceeeehH---HHH---HHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-------------------
Q 039127 21 SVKLWLGREE---GTV---ELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~---~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------- 75 (162)
....++|.+. .++ ..++... ...-+-+||..|.|||++++.+.+....+
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~------pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~ 98 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGL------PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELL 98 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCC------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHH
Confidence 4468889887 222 2233333 34456689999999999999998766554
Q ss_pred ---------EEEEEeCCCCC-ChhhHHHHHhhcccc---CCCc-EEEEecCChhh
Q 039127 76 ---------FNFALDDTWKE-KYVDWTNMRDLFAAV---ASRS-KVIVTTRNQGV 116 (162)
Q Consensus 76 ---------~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~gs-~iiiTTR~~~v 116 (162)
|+|.+||+.-. +...+..|+..|..+ .+.. .|..||..+++
T Consensus 99 ~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 99 DLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred HHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 89999998632 444566676666532 2223 34445544443
No 109
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.93 E-value=1.2e-05 Score=55.89 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=35.6
Q ss_pred EEEEcCCCcchHHHHHHHHccCCce----------------------------------------EEEEEeCCCCCChhh
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTVN----------------------------------------FNFALDDTWKEKYVD 90 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~~----------------------------------------~LlVlDdv~~~~~~~ 90 (162)
|.++|.+|+|||+||+.++...... .+++||+++..+...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~v 81 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPEV 81 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHHH
Confidence 5689999999999999987665433 899999998555555
Q ss_pred HHHHHhhc
Q 039127 91 WTNMRDLF 98 (162)
Q Consensus 91 ~~~l~~~l 98 (162)
+..|...+
T Consensus 82 ~~~L~~ll 89 (139)
T PF07728_consen 82 LESLLSLL 89 (139)
T ss_dssp HHTTHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 110
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.93 E-value=1.9e-05 Score=58.88 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC
Q 039127 76 FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN 113 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~ 113 (162)
.++|+|++.|.+..++..+... .+.+|+++++--.
T Consensus 121 ~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 121 AFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp EEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred eEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 7999999998888877776554 4679999998744
No 111
>CHL00176 ftsH cell division protein; Validated
Probab=97.93 E-value=7.7e-05 Score=64.35 Aligned_cols=122 Identities=15% Similarity=0.074 Sum_probs=71.5
Q ss_pred CceeeehH------HHHHHhhcCCCC--CCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-------------------
Q 039127 23 KLWLGREE------GTVELVLKDDSE--TIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------- 75 (162)
Q Consensus 23 ~~~vGr~~------~i~~~l~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------- 75 (162)
.++.|.++ ++++.+...... .+....+-+.++|++|.|||+||+.+++.....
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~ 262 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAA 262 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHH
Confidence 56888877 455554433200 011224457899999999999999998754322
Q ss_pred --------------EEEEEeCCCCCC----------hhhHH----HHHhhccc--cCCCcEEEEecCChhhH-h-hhCC-
Q 039127 76 --------------FNFALDDTWKEK----------YVDWT----NMRDLFAA--VASRSKVIVTTRNQGVA-S-IMGT- 122 (162)
Q Consensus 76 --------------~LlVlDdv~~~~----------~~~~~----~l~~~l~~--~~~gs~iiiTTR~~~v~-~-~~~~- 122 (162)
++|++|+++... ...+. .+...+.. ...+-.+|.||...... . ...+
T Consensus 263 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpG 342 (638)
T CHL00176 263 RVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPG 342 (638)
T ss_pred HHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccc
Confidence 789999996320 11222 22222221 22344566676554322 1 1221
Q ss_pred --CCeeeCCCCCHHHHHHHHhhCC
Q 039127 123 --MPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 123 --~~~~~l~~L~~~~~~~lf~~~a 144 (162)
...+.+...+.++-.++|+.++
T Consensus 343 RFd~~I~v~lPd~~~R~~IL~~~l 366 (638)
T CHL00176 343 RFDRQITVSLPDREGRLDILKVHA 366 (638)
T ss_pred cCceEEEECCCCHHHHHHHHHHHH
Confidence 2467888888888888887664
No 112
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00011 Score=58.66 Aligned_cols=68 Identities=4% Similarity=-0.009 Sum_probs=50.5
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh-hhHhhh-CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 76 FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ-GVASIM-GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
-++|+|+++..+......|...+..-..++.+|++|.+. .+...+ +.-..+.+.+++.+++...+...
T Consensus 108 kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 108 KVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred eEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHh
Confidence 456789999888999999999888755667676666664 443332 33346899999999999888765
No 113
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.91 E-value=2.1e-05 Score=52.58 Aligned_cols=19 Identities=37% Similarity=0.321 Sum_probs=16.5
Q ss_pred EEEEcCCCcchHHHHHHHH
Q 039127 51 IPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~ 69 (162)
|-|+|.+|+|||+||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~ 19 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELA 19 (107)
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 4589999999999999854
No 114
>PRK10536 hypothetical protein; Provisional
Probab=97.90 E-value=6.3e-05 Score=57.88 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=26.0
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh
Q 039127 76 FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ 114 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~ 114 (162)
-++|+|.+.+.+..+...+... .+.+|++|++--..
T Consensus 178 ~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~~GD~~ 213 (262)
T PRK10536 178 AVVILDEAQNVTAAQMKMFLTR---LGENVTVIVNGDIT 213 (262)
T ss_pred CEEEEechhcCCHHHHHHHHhh---cCCCCEEEEeCChh
Confidence 6899999997777665555544 45789999887543
No 115
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.89 E-value=4.4e-05 Score=59.29 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=75.6
Q ss_pred CCCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-----------------------
Q 039127 21 SVKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN----------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------- 75 (162)
...+|+|.++ +-++....... ..+....=+.++|++|.||||||..+++...++
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk-~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~Le 102 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAK-KRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNLE 102 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHH-hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhcCC
Confidence 4578999999 44444332210 123456677899999999999999999988776
Q ss_pred --EEEEEeCCCCCChhhHHHHHhhcc--------ccCCC-----------cEEEEecCChhhHhhhCCC--CeeeCCCCC
Q 039127 76 --FNFALDDTWKEKYVDWTNMRDLFA--------AVASR-----------SKVIVTTRNQGVASIMGTM--PAYELKKLV 132 (162)
Q Consensus 76 --~LlVlDdv~~~~~~~~~~l~~~l~--------~~~~g-----------s~iiiTTR~~~v~~~~~~~--~~~~l~~L~ 132 (162)
=.|.+|.++..+...-+-|-..+. ..+++ .-|=.|||.-.+.+.+... -..+++--+
T Consensus 103 ~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~ 182 (332)
T COG2255 103 EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYT 182 (332)
T ss_pred cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCC
Confidence 467789988654433333322221 01222 2355688876655433221 145677777
Q ss_pred HHHHHHHHhhCC
Q 039127 133 NDNCLLIFSQHP 144 (162)
Q Consensus 133 ~~~~~~lf~~~a 144 (162)
.+|-.++..+.|
T Consensus 183 ~~eL~~Iv~r~a 194 (332)
T COG2255 183 VEELEEIVKRSA 194 (332)
T ss_pred HHHHHHHHHHHH
Confidence 777777766554
No 116
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.89 E-value=1.9e-05 Score=62.45 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=47.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce-----------------------------------EEEEEeCCCCCChhhHH
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN-----------------------------------FNFALDDTWKEKYVDWT 92 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----------------------------------~LlVlDdv~~~~~~~~~ 92 (162)
..-+.++|..|+|||.||.++++....+ =||||||+.......|.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSWV 235 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHHH
Confidence 4568899999999999999998765322 58999999765566675
Q ss_pred H--HHhhc-ccc-CCCcEEEEecCC
Q 039127 93 N--MRDLF-AAV-ASRSKVIVTTRN 113 (162)
Q Consensus 93 ~--l~~~l-~~~-~~gs~iiiTTR~ 113 (162)
. +...+ ... ..+..+|+||..
T Consensus 236 ~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 236 RDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HHHHHHHHHHHHHHCCCeEEEECCC
Confidence 3 44433 322 345668889875
No 117
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=4.4e-05 Score=65.62 Aligned_cols=122 Identities=19% Similarity=0.140 Sum_probs=77.7
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------ 75 (162)
.+-+|.++ +|++.|--..- ..+-.-++++++|++|+|||+|++.++.....+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l-~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIG 401 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKL-TKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIG 401 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHH-hccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccc
Confidence 45578777 67776632210 122345899999999999999999998665443
Q ss_pred -----------------EEEEEeCCCCCCh----hhHHHHHhhccccCC-------------Cc-EEEEecCChh---hH
Q 039127 76 -----------------FNFALDDTWKEKY----VDWTNMRDLFAAVAS-------------RS-KVIVTTRNQG---VA 117 (162)
Q Consensus 76 -----------------~LlVlDdv~~~~~----~~~~~l~~~l~~~~~-------------gs-~iiiTTR~~~---v~ 117 (162)
-+++||.++.... +.-..|+..|....+ =| -+.|+|-|.- .+
T Consensus 402 amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~ 481 (782)
T COG0466 402 AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPA 481 (782)
T ss_pred cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCCh
Confidence 6899999875321 122233333321111 13 3566665532 24
Q ss_pred hhhCCCCeeeCCCCCHHHHHHHHhhCCC
Q 039127 118 SIMGTMPAYELKKLVNDNCLLIFSQHPS 145 (162)
Q Consensus 118 ~~~~~~~~~~l~~L~~~~~~~lf~~~af 145 (162)
.++..++++++.+-+.+|-.++-+++..
T Consensus 482 PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 482 PLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred HHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 4566778999999999998888776643
No 118
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.85 E-value=0.00025 Score=54.78 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=41.5
Q ss_pred EEEEEeCCCCCChhhHHHHHhhcccc----------------CCCcEEEEecCChhhH-------hhhCCCCeeeCCCCC
Q 039127 76 FNFALDDTWKEKYVDWTNMRDLFAAV----------------ASRSKVIVTTRNQGVA-------SIMGTMPAYELKKLV 132 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~iiiTTR~~~v~-------~~~~~~~~~~l~~L~ 132 (162)
..+++|+++..+.+.+..|...+... .+.-+||+|+...... .....-..+.+...+
T Consensus 107 ~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~ 186 (262)
T TIGR02640 107 FTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPD 186 (262)
T ss_pred CEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCC
Confidence 46888999877777777777665321 1244778887653211 111111246677778
Q ss_pred HHHHHHHHhhC
Q 039127 133 NDNCLLIFSQH 143 (162)
Q Consensus 133 ~~~~~~lf~~~ 143 (162)
.++-.+++..+
T Consensus 187 ~~~e~~Il~~~ 197 (262)
T TIGR02640 187 IDTETAILRAK 197 (262)
T ss_pred HHHHHHHHHHh
Confidence 77777777765
No 119
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00017 Score=57.60 Aligned_cols=97 Identities=12% Similarity=0.144 Sum_probs=71.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC--------------------------ce-------------------------
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT--------------------------VN------------------------- 75 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~--------------------------~~------------------------- 75 (162)
-...+.++|..|+|||++|+.+.+..- ..
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~ 106 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSG 106 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCC
Confidence 356778999999999999987743310 00
Q ss_pred -----EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh-hhHhhh-CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 76 -----FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ-GVASIM-GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 76 -----~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
-++|+|+++..+......|+..+..-...+.+|++|.+. .+...+ .....+++.+++.++....+...
T Consensus 107 ~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 107 VESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 488999999888888889999988766677677666553 333333 33447999999999998888754
No 120
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.83 E-value=9.2e-05 Score=65.91 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=59.6
Q ss_pred CceeeehH---HHHHHhhcCCC--CCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc---e-------------------
Q 039127 23 KLWLGREE---GTVELVLKDDS--ETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV---N------------------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~---~------------------- 75 (162)
..++|.+. .+.+.+..... ........++.++|+.|+|||.||+.+...... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 57788888 45555432110 011234557889999999999999766443210 0
Q ss_pred ------------------------EEEEEeCCCCCChhhHHHHHhhccccC-----------CCcEEEEecCC
Q 039127 76 ------------------------FNFALDDTWKEKYVDWTNMRDLFAAVA-----------SRSKVIVTTRN 113 (162)
Q Consensus 76 ------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTTR~ 113 (162)
.+++||++...+++.++.|...+..+. ..+-||+||..
T Consensus 646 g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 589999999778888888887776542 34567777654
No 121
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.83 E-value=2.7e-05 Score=62.07 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=44.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce-------------------------------------EEEEEeCCCCCChhhH
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN-------------------------------------FNFALDDTWKEKYVDW 91 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------------------------~LlVlDdv~~~~~~~~ 91 (162)
..+.++|..|+|||+||..+++....+ =||||||+.......|
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~~ 263 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKITEF 263 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCCHH
Confidence 568899999999999999987654221 4899999964333333
Q ss_pred --HHHHhhcccc-CCCcEEEEecCC
Q 039127 92 --TNMRDLFAAV-ASRSKVIVTTRN 113 (162)
Q Consensus 92 --~~l~~~l~~~-~~gs~iiiTTR~ 113 (162)
..+...+... ..+..+||||..
T Consensus 264 ~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 264 SKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3454444432 335568888875
No 122
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.81 E-value=0.00019 Score=58.68 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=60.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC-------
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE------- 86 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~------- 86 (162)
..+-+.++|.+|+|||+||+.+++..... .++++|+++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~ 257 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA 257 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccc
Confidence 35668899999999999999998765432 68999997631
Q ss_pred ----Chhh---HHHHHhhccc--cCCCcEEEEecCChhhH-h-hhCC---CCeeeCCCCCHHHHHHHHhhC
Q 039127 87 ----KYVD---WTNMRDLFAA--VASRSKVIVTTRNQGVA-S-IMGT---MPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 87 ----~~~~---~~~l~~~l~~--~~~gs~iiiTTR~~~v~-~-~~~~---~~~~~l~~L~~~~~~~lf~~~ 143 (162)
+... +..+...+.. ...+..+|.||...+.. . ...+ ...+++...+.++...+|+.+
T Consensus 258 ~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~ 328 (398)
T PTZ00454 258 QTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTI 328 (398)
T ss_pred cCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHH
Confidence 0111 1222222221 12345677777664432 1 1221 335888888988888888754
No 123
>PRK06921 hypothetical protein; Provisional
Probab=97.80 E-value=4.1e-05 Score=59.32 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=43.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc----e------------------------------EEEEEeCCCC-----CCh
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV----N------------------------------FNFALDDTWK-----EKY 88 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~----~------------------------------~LlVlDdv~~-----~~~ 88 (162)
...+.++|..|+|||+||..+++.... . -||||||+.. ...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~~ 196 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRA 196 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCccC
Confidence 456889999999999999998765321 1 4899999932 122
Q ss_pred hhHH--HHHhhcccc-CCCcEEEEecCC
Q 039127 89 VDWT--NMRDLFAAV-ASRSKVIVTTRN 113 (162)
Q Consensus 89 ~~~~--~l~~~l~~~-~~gs~iiiTTR~ 113 (162)
..|. .+...+... ..+..+||||..
T Consensus 197 t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 197 TEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3443 344444432 234568888865
No 124
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.80 E-value=1.7e-05 Score=53.65 Aligned_cols=33 Identities=33% Similarity=0.319 Sum_probs=26.5
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCceEEEEEeCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVNFNFALDDT 83 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~~LlVlDdv 83 (162)
+|.|.|++|+||||+|+.+...... ..+-+|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~-~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGF-PVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC-EEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-eEEEecce
Confidence 5889999999999999999987543 34577774
No 125
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.78 E-value=0.00015 Score=64.01 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=73.6
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------ 75 (162)
.+.+|.++ .|+++|..... .......++.++|.+|+||||+|+.+.......
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g 400 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIG 400 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCC
Confidence 45788887 67766653110 011234578899999999999999887543221
Q ss_pred -----------------EEEEEeCCCCCChhh----HHHHHhhcccc---------------CCCcEEEEecCChhhHh-
Q 039127 76 -----------------FNFALDDTWKEKYVD----WTNMRDLFAAV---------------ASRSKVIVTTRNQGVAS- 118 (162)
Q Consensus 76 -----------------~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~iiiTTR~~~v~~- 118 (162)
-+++||.++...... ...|...+... .....+|.|+..-.+..
T Consensus 401 ~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~a 480 (784)
T PRK10787 401 SMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAP 480 (784)
T ss_pred CCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHH
Confidence 368899997543322 34555444321 01223344554333222
Q ss_pred hhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 119 IMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 119 ~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
......++++.+++.++-.++.+++.
T Consensus 481 Ll~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 481 LLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred HhcceeeeecCCCCHHHHHHHHHHhh
Confidence 23445579999999999988887765
No 126
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=9.1e-05 Score=61.97 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=66.2
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCc---e-------------------------------EEEEEeCCCCCChhhH
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTV---N-------------------------------FNFALDDTWKEKYVDW 91 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~---~-------------------------------~LlVlDdv~~~~~~~~ 91 (162)
.....+.+.|.+|+|||+||..++....- + -.+|+||+. ..-+|
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiE--rLiD~ 613 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIE--RLLDY 613 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchh--hhhcc
Confidence 34566778999999999999998765432 2 689999997 44333
Q ss_pred H------------HHHhhcccc-CCCcE--EEEecCChhhHhhhCC----CCeeeCCCCCH-HHHHHHHhhCC-CCCCC
Q 039127 92 T------------NMRDLFAAV-ASRSK--VIVTTRNQGVASIMGT----MPAYELKKLVN-DNCLLIFSQHP-SGTRE 149 (162)
Q Consensus 92 ~------------~l~~~l~~~-~~gs~--iiiTTR~~~v~~~~~~----~~~~~l~~L~~-~~~~~lf~~~a-f~~~~ 149 (162)
- .|.-.+... .+|-| |+-||....+...|+- ...+++..++. ++..+.++..- |...+
T Consensus 614 vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fsd~~ 692 (744)
T KOG0741|consen 614 VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFSDDE 692 (744)
T ss_pred cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCCCcch
Confidence 2 222233322 23444 4447777777776653 23688999987 77888877653 55443
No 127
>PTZ00202 tuzin; Provisional
Probab=97.74 E-value=0.00011 Score=60.73 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=37.9
Q ss_pred cCCCCCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 18 VVPSVKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 18 ~~~~~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++.+.|+||+. .-+..++.+. .....+++.|.|++|+|||||++.+.....
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~---d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRL---DTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhcc---CCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3456789999999 3334444332 112346889999999999999999987665
No 128
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.74 E-value=0.00036 Score=62.30 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=58.1
Q ss_pred CceeeehH---HHHHHhhcCCC--CCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 23 KLWLGREE---GTVELVLKDDS--ETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
..++|.+. .+.+.+..... ...+.....+.++|..|+|||+||+.+++.....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~Li 647 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHh
Confidence 46788888 34444432110 0011223477899999999999999987533110
Q ss_pred ------------------------EEEEEeCCCCCChhhHHHHHhhcccc----C-------CCcEEEEecCC
Q 039127 76 ------------------------FNFALDDTWKEKYVDWTNMRDLFAAV----A-------SRSKVIVTTRN 113 (162)
Q Consensus 76 ------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iiiTTR~ 113 (162)
-+|+||++...+...+..|...+..+ + ..+.||+||..
T Consensus 648 G~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 648 GAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred CCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 38999999987888888888777543 1 12336778765
No 129
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.71 E-value=0.00031 Score=57.47 Aligned_cols=86 Identities=21% Similarity=0.214 Sum_probs=67.1
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce-------------------------------EEEEEeCCCCCChhhHHHHHhhc
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN-------------------------------FNFALDDTWKEKYVDWTNMRDLF 98 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------------------~LlVlDdv~~~~~~~~~~l~~~l 98 (162)
++.|.|+-++|||||++.+....... ..++||.|. ....|......+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq--~v~~W~~~lk~l 116 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQ--NVPDWERALKYL 116 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEeccc--CchhHHHHHHHH
Confidence 89999999999999997776555331 379999999 888899988888
Q ss_pred cccCCCcEEEEecCChhhHh------hhCCCCeeeCCCCCHHHHHH
Q 039127 99 AAVASRSKVIVTTRNQGVAS------IMGTMPAYELKKLVNDNCLL 138 (162)
Q Consensus 99 ~~~~~gs~iiiTTR~~~v~~------~~~~~~~~~l~~L~~~~~~~ 138 (162)
....+. ++++|+-+..... ..|....+++-|||-.|-..
T Consensus 117 ~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 117 YDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred Hccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 876666 8888888765432 22334478999999988865
No 130
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.70 E-value=3.4e-05 Score=59.43 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..-+.++|.+|+|||.||.++.+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 44778999999999999999887665
No 131
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.70 E-value=5.2e-05 Score=58.05 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=44.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce-------------------------------------EEEEEeCCCCCChhh
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN-------------------------------------FNFALDDTWKEKYVD 90 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------------------------~LlVlDdv~~~~~~~ 90 (162)
...+.++|.+|+|||+||..+++..... =+||+||+.......
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~ 178 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESR 178 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCH
Confidence 3467899999999999999887654221 579999997555555
Q ss_pred HHH--HHhhcccc-CCCcEEEEecCC
Q 039127 91 WTN--MRDLFAAV-ASRSKVIVTTRN 113 (162)
Q Consensus 91 ~~~--l~~~l~~~-~~gs~iiiTTR~ 113 (162)
|+. +...+... .....+|+||..
T Consensus 179 ~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 179 YEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 653 33333321 223457888865
No 132
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.69 E-value=0.00011 Score=60.74 Aligned_cols=41 Identities=17% Similarity=0.005 Sum_probs=29.4
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.++++.+. .++..|.... .+.++|++|+|||++|+.+++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~---------~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK---------NIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC---------CEEEECCCCCCHHHHHHHHHHHh
Confidence 34555555 5665555443 67789999999999999987654
No 133
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00018 Score=57.02 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=25.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
-++|.++|++|.|||+|++++++...++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4788899999999999999999998877
No 134
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.68 E-value=9.8e-05 Score=59.20 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=26.2
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC
Q 039127 76 FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN 113 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~ 113 (162)
.++|+|.+.|..+.+...+ +...+.||||+.|.--
T Consensus 353 ~FiIIDEaQNLTpheikTi---ltR~G~GsKIVl~gd~ 387 (436)
T COG1875 353 SFIIIDEAQNLTPHELKTI---LTRAGEGSKIVLTGDP 387 (436)
T ss_pred ceEEEehhhccCHHHHHHH---HHhccCCCEEEEcCCH
Confidence 7899999997666655554 4457889999988743
No 135
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00055 Score=54.31 Aligned_cols=69 Identities=3% Similarity=0.064 Sum_probs=50.1
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChhhHhhh-CCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 76 FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQGVASIM-GTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
-++|+|+++..+......|+..+..-.+..-|++|+....+...+ +....+++.+++.++..+.+.+..
T Consensus 126 kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 126 KVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred eEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence 688999998888888888888887645444445555544444433 334579999999999999998763
No 136
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.66 E-value=0.00025 Score=59.58 Aligned_cols=97 Identities=14% Similarity=0.046 Sum_probs=58.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCCC-------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKEK------- 87 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~~------- 87 (162)
.+-+.++|++|+|||+||+.+++..... .+|++|+++...
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~ 167 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGL 167 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCc
Confidence 3457799999999999999998765432 689999986310
Q ss_pred ---hhhHHH----HHhhccc--cCCCcEEEEecCChhh-Hh-hhC---CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 88 ---YVDWTN----MRDLFAA--VASRSKVIVTTRNQGV-AS-IMG---TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 88 ---~~~~~~----l~~~l~~--~~~gs~iiiTTR~~~v-~~-~~~---~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
...+.. +...+.. ...+-.||.||..... -. ... -...+++...+.++-.++|+.+.
T Consensus 168 ~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l 238 (495)
T TIGR01241 168 GGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHA 238 (495)
T ss_pred CCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHH
Confidence 111222 2222221 1223455666655432 11 111 23468899889888888887654
No 137
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.66 E-value=0.00012 Score=52.96 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=46.3
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce---------------------------------------------EEEEEeCCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------------------FNFALDDTW 84 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------------------~LlVlDdv~ 84 (162)
-|.|+|..|.||+.+|+.+++..... =-|+||++.
T Consensus 24 pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~ 103 (168)
T PF00158_consen 24 PVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIE 103 (168)
T ss_dssp -EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGG
T ss_pred CEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccceEEeecchh
Confidence 44599999999999999999865432 368899999
Q ss_pred CCChhhHHHHHhhcccc---CC--------CcEEEEecCCh
Q 039127 85 KEKYVDWTNMRDLFAAV---AS--------RSKVIVTTRNQ 114 (162)
Q Consensus 85 ~~~~~~~~~l~~~l~~~---~~--------gs~iiiTTR~~ 114 (162)
.........|...+..+ .. ..|||.||...
T Consensus 104 ~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 104 DLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp GS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred hhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 87788888887776532 11 34788877653
No 138
>PHA02244 ATPase-like protein
Probab=97.66 E-value=0.00026 Score=57.15 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=44.5
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce-----------------------------------EEEEEeCCCCCChhhHHHH
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN-----------------------------------FNFALDDTWKEKYVDWTNM 94 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~-----------------------------------~LlVlDdv~~~~~~~~~~l 94 (162)
-|.|+|.+|+|||+||+.+++..... .+++||++.....+....|
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~~L 200 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEALIII 200 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHHHHHHH
Confidence 35689999999999999987543311 5889999986666665555
Q ss_pred Hhhccc-----------cCCCcEEEEecCC
Q 039127 95 RDLFAA-----------VASRSKVIVTTRN 113 (162)
Q Consensus 95 ~~~l~~-----------~~~gs~iiiTTR~ 113 (162)
...+.. .+++.++|+|+..
T Consensus 201 ~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 201 NSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred HHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 555421 2345678888765
No 139
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.65 E-value=0.0003 Score=54.27 Aligned_cols=123 Identities=15% Similarity=0.059 Sum_probs=76.2
Q ss_pred CCceeeehH-----HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce---------------------
Q 039127 22 VKLWLGREE-----GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN--------------------- 75 (162)
Q Consensus 22 ~~~~vGr~~-----~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--------------------- 75 (162)
-++++|.++ .++-..+.+.+.-++...+-|..+|++|.|||.+|+++.+..++.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~I 199 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRI 199 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHH
Confidence 368899988 344333433322244456788899999999999999999998876
Q ss_pred ------------EEEEEeCCCCC------------ChhhHHHHHhhccc--cCCCcEEEEecCChhhHhh-hCC--CCee
Q 039127 76 ------------FNFALDDTWKE------------KYVDWTNMRDLFAA--VASRSKVIVTTRNQGVASI-MGT--MPAY 126 (162)
Q Consensus 76 ------------~LlVlDdv~~~------------~~~~~~~l~~~l~~--~~~gs~iiiTTR~~~v~~~-~~~--~~~~ 126 (162)
|++.+|.++-. -.+....|+..+.. ...|-..|..|.+..+... +.+ ..-+
T Consensus 200 hely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEI 279 (368)
T COG1223 200 HELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEI 279 (368)
T ss_pred HHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhhee
Confidence 88889977521 01222334444432 2345555666666554322 221 1235
Q ss_pred eCCCCCHHHHHHHHhhCC
Q 039127 127 ELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 127 ~l~~L~~~~~~~lf~~~a 144 (162)
+..--++++-.+++...+
T Consensus 280 EF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 280 EFKLPNDEERLEILEYYA 297 (368)
T ss_pred eeeCCChHHHHHHHHHHH
Confidence 555567888888887654
No 140
>PRK08118 topology modulation protein; Reviewed
Probab=97.65 E-value=3.8e-05 Score=55.43 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=22.8
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.|.|+|++|+||||||+.+++.....
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 57899999999999999999886543
No 141
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.64 E-value=0.00023 Score=63.44 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=59.6
Q ss_pred CceeeehH---HHHHHhhcCCCC--CCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSE--TIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
..++|.+. .+.+.+...... .......++.++|..|+|||++|+.+.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~ 644 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI 644 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhc
Confidence 46788877 444444332100 011224567799999999999999987532100
Q ss_pred ------------------------EEEEEeCCCCCChhhHHHHHhhcccc-----------CCCcEEEEecCC
Q 039127 76 ------------------------FNFALDDTWKEKYVDWTNMRDLFAAV-----------ASRSKVIVTTRN 113 (162)
Q Consensus 76 ------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTTR~ 113 (162)
.+++||++...+++.+..|...+..+ ...+-||+||..
T Consensus 645 g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 645 GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred CCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 38999999988888999888877543 123447777765
No 142
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.63 E-value=0.00021 Score=49.54 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.0
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986654
No 143
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.63 E-value=0.00023 Score=62.83 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=67.5
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------ 75 (162)
.+++|.+. .+.+++..... .......++.++|++|+|||++|+.+.+.....
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~-~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g 398 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKL-RGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVG 398 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHh-hcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeC
Confidence 35778777 45554321110 011233578899999999999999987654211
Q ss_pred -----------------EEEEEeCCCCCCh----hhHHHHHhhccc--------c-------CCCcEEEEecCChh-h-H
Q 039127 76 -----------------FNFALDDTWKEKY----VDWTNMRDLFAA--------V-------ASRSKVIVTTRNQG-V-A 117 (162)
Q Consensus 76 -----------------~LlVlDdv~~~~~----~~~~~l~~~l~~--------~-------~~gs~iiiTTR~~~-v-~ 117 (162)
-+++||.++.... +....|...+.. . .....+|.||.... + .
T Consensus 399 ~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~ 478 (775)
T TIGR00763 399 AMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPR 478 (775)
T ss_pred CCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCH
Confidence 3788999874322 112333333321 0 01223344443322 1 1
Q ss_pred hhhCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 118 SIMGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 118 ~~~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.......++++.+++.++-..+++++
T Consensus 479 ~L~~R~~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 479 PLLDRMEVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred HHhCCeeEEecCCCCHHHHHHHHHHH
Confidence 22334457899999999888888654
No 144
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.00011 Score=55.18 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=44.3
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCce--EEEEEeCCCC-----------------CChhhHHHHHhhccccCCCcE
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTVN--FNFALDDTWK-----------------EKYVDWTNMRDLFAAVASRSK 106 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~LlVlDdv~~-----------------~~~~~~~~l~~~l~~~~~gs~ 106 (162)
..+.+|+|-|.+|+||||+|+.++...... .++-+||... .+...|+.+...+..-..|..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 457899999999999999999999988755 6777787643 133456666666655444544
No 145
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.62 E-value=0.00031 Score=58.91 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=61.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC-------
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE------- 86 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~------- 86 (162)
..+-+.++|++|.|||.+|+.+.+..... +++.+|+++..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~ 337 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK 337 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC
Confidence 34567899999999999999998875432 78999998621
Q ss_pred -Chhh----HHHHHhhccccCCCcEEEEecCChhh-Hhh-hC---CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 87 -KYVD----WTNMRDLFAAVASRSKVIVTTRNQGV-ASI-MG---TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 87 -~~~~----~~~l~~~l~~~~~gs~iiiTTR~~~v-~~~-~~---~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
+... ...+...+.....+-.||.||.+... -.. .. -+..+.+..-+.++-.++|+.+.
T Consensus 338 ~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l 405 (489)
T CHL00195 338 GDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHL 405 (489)
T ss_pred CCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 0111 11222222222333345667765432 111 11 23468888889999999998664
No 146
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.00017 Score=60.46 Aligned_cols=117 Identities=14% Similarity=0.124 Sum_probs=82.3
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHc---cCC-ce-------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYN---DKT-VN------------------- 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~---~~~-~~------------------- 75 (162)
-++++|.+. .+.+.+.... -.......|.-|+||||+|+.+.. +.. ..
T Consensus 15 F~evvGQe~v~~~L~nal~~~r------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGR------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCc------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcc
Confidence 356799999 4555554443 345677889999999999988753 221 11
Q ss_pred --------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcE-EEEecCChhhHhh-hC
Q 039127 76 --------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSK-VIVTTRNQGVASI-MG 121 (162)
Q Consensus 76 --------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~-iiiTTR~~~v~~~-~~ 121 (162)
=.+|+|.|+..+...|..|+..+..-...-. |+.||-.+.+... ..
T Consensus 89 DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlS 168 (515)
T COG2812 89 DVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILS 168 (515)
T ss_pred cchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhh
Confidence 4889999998889999999988876544544 4556655555443 34
Q ss_pred CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 122 TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 122 ~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.-+.|.+..|+.++-...+...+
T Consensus 169 Rcq~f~fkri~~~~I~~~L~~i~ 191 (515)
T COG2812 169 RCQRFDFKRLDLEEIAKHLAAIL 191 (515)
T ss_pred ccccccccCCCHHHHHHHHHHHH
Confidence 44579999999988887776654
No 147
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.61 E-value=6.2e-05 Score=58.24 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=29.5
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCce----EEEEEe
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTVN----FNFALD 81 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~LlVlD 81 (162)
.....+.++||+|+||||+.+.++.+...+ |.+-||
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLD 56 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLD 56 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCC
Confidence 345677788999999999999998776554 888888
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.59 E-value=0.00038 Score=61.86 Aligned_cols=78 Identities=12% Similarity=0.061 Sum_probs=52.0
Q ss_pred CceeeehH---HHHHHhhcCCCC--CCCCCeEEEEEEcCCCcchHHHHHHHHccCCc---e-------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSE--TIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV---N------------------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~---~------------------- 75 (162)
..++|.+. .+.+.+...... ..+.....+.++|+.|+|||+||+.+.+.... .
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 56788888 444444321100 01223446678999999999999887653210 0
Q ss_pred ------------------------EEEEEeCCCCCChhhHHHHHhhccc
Q 039127 76 ------------------------FNFALDDTWKEKYVDWTNMRDLFAA 100 (162)
Q Consensus 76 ------------------------~LlVlDdv~~~~~~~~~~l~~~l~~ 100 (162)
.+++||+++..+++.+..|...+..
T Consensus 589 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred CCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 5889999998888888888887764
No 149
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00032 Score=61.72 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=52.6
Q ss_pred CceeeehH---HHHHHhhcCCC--CCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 23 KLWLGREE---GTVELVLKDDS--ETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
..++|.++ .+.+.+..... .........+.++|+.|+|||+||+.+.......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~ 537 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCC
Confidence 46889888 44444432100 0112234568899999999999998886544211
Q ss_pred ---------------------EEEEEeCCCCCChhhHHHHHhhccc
Q 039127 76 ---------------------FNFALDDTWKEKYVDWTNMRDLFAA 100 (162)
Q Consensus 76 ---------------------~LlVlDdv~~~~~~~~~~l~~~l~~ 100 (162)
.+++||+++..+.+.+..|...+..
T Consensus 538 ~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred CCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 5899999998778888888877653
No 150
>PRK08233 hypothetical protein; Provisional
Probab=97.57 E-value=0.00011 Score=52.96 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=28.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCceEEEEEeCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVNFNFALDDT 83 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~LlVlDdv 83 (162)
..+|+|.|.+|+||||||..+........++.+|+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 468999999999999999999987653345555654
No 151
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.56 E-value=0.0003 Score=59.18 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=60.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc-----------------------------------------------eEEEEE
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV-----------------------------------------------NFNFAL 80 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~-----------------------------------------------~~LlVl 80 (162)
.+-+.++|++|+|||++|+.+++.... .++++|
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfI 295 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFF 295 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 456789999999999999998875310 058999
Q ss_pred eCCCCC----C---hhh-----HHHHHhhcccc--CCCcEEEEecCChhhHh-h-hC--C-CCeeeCCCCCHHHHHHHHh
Q 039127 81 DDTWKE----K---YVD-----WTNMRDLFAAV--ASRSKVIVTTRNQGVAS-I-MG--T-MPAYELKKLVNDNCLLIFS 141 (162)
Q Consensus 81 Ddv~~~----~---~~~-----~~~l~~~l~~~--~~gs~iiiTTR~~~v~~-~-~~--~-~~~~~l~~L~~~~~~~lf~ 141 (162)
|+++.. . ... ...+...+... ..+..||.||....... . .. . +..+++...+.++..++|.
T Consensus 296 DEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~ 375 (512)
T TIGR03689 296 DEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFS 375 (512)
T ss_pred ehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHH
Confidence 999731 0 111 12333333321 12344555665443321 1 22 1 2358999999999999998
Q ss_pred hCC
Q 039127 142 QHP 144 (162)
Q Consensus 142 ~~a 144 (162)
++.
T Consensus 376 ~~l 378 (512)
T TIGR03689 376 KYL 378 (512)
T ss_pred HHh
Confidence 763
No 152
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.54 E-value=0.0013 Score=55.70 Aligned_cols=88 Identities=10% Similarity=0.030 Sum_probs=58.5
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
....++|... ++.+.+..-. ..-.-|.|+|..|+|||++|+.+++.....
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a-----~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lf 268 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA-----RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELF 268 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh-----CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHc
Confidence 3468899988 4444433222 112345699999999999999998653211
Q ss_pred -----------------------EEEEEeCCCCCChhhHHHHHhhccccC---C--------CcEEEEecCC
Q 039127 76 -----------------------FNFALDDTWKEKYVDWTNMRDLFAAVA---S--------RSKVIVTTRN 113 (162)
Q Consensus 76 -----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iiiTTR~ 113 (162)
-.|+||++.......+..|...+..+. . ..++|.||..
T Consensus 269 g~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 269 GHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred CCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 148899998777888888887775421 1 2378887754
No 153
>PHA00729 NTP-binding motif containing protein
Probab=97.53 E-value=0.0021 Score=48.67 Aligned_cols=25 Identities=48% Similarity=0.549 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...+.|.|.+|+||||||..+.+..
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999987763
No 154
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.52 E-value=0.00015 Score=55.08 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=50.4
Q ss_pred CCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc----e--------------------
Q 039127 22 VKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV----N-------------------- 75 (162)
Q Consensus 22 ~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~----~-------------------- 75 (162)
..++||-++ +.+..+..+. +.+-+.|.|++|+||||-+..+++..-. .
T Consensus 26 l~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHH
Confidence 368899988 4444444443 6788889999999999955444333211 1
Q ss_pred ---------------EEEEEeCCCCCChhhHHHHHhhcc
Q 039127 76 ---------------FNFALDDTWKEKYVDWTNMRDLFA 99 (162)
Q Consensus 76 ---------------~LlVlDdv~~~~~~~~~~l~~~l~ 99 (162)
-++|||..++........++....
T Consensus 100 K~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtME 138 (333)
T KOG0991|consen 100 KMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTME 138 (333)
T ss_pred HHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHH
Confidence 689999999877777777776554
No 155
>PRK06696 uridine kinase; Validated
Probab=97.52 E-value=0.00013 Score=54.86 Aligned_cols=50 Identities=22% Similarity=0.131 Sum_probs=35.9
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce--EEEE--EeCCC
Q 039127 31 GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN--FNFA--LDDTW 84 (162)
Q Consensus 31 ~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~LlV--lDdv~ 84 (162)
+|.+.+.... .....+|+|.|.+|+||||||+.+....... ..++ +||..
T Consensus 9 ~la~~~~~~~----~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 9 ELAEHILTLN----LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred HHHHHHHHhC----CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 5666666432 2357899999999999999999998765322 2333 78876
No 156
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0017 Score=51.79 Aligned_cols=68 Identities=1% Similarity=-0.022 Sum_probs=51.2
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC-hhhHhhh-CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 76 FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN-QGVASIM-GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
-++|+|+++..+......|+..+..-.....+|++|.+ ..+...+ +.-..+.+.+++.++....+...
T Consensus 109 KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 109 KVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHH
Confidence 47889999988888999999998876667766666655 3444333 33347999999999998888764
No 157
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.51 E-value=0.00035 Score=58.21 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|+.|+||||||+.+..-..
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~ 387 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWP 387 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccc
Confidence 4889999999999999999966543
No 158
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00071 Score=51.15 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
-+-+|.|+.|+||||||..+..++.-+
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p~Y~ 57 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHPKYE 57 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCce
Confidence 477899999999999999999887544
No 159
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.51 E-value=0.00045 Score=50.92 Aligned_cols=28 Identities=18% Similarity=0.263 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
-..+.++|..|.|||||.+.+|...+..
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt 55 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT 55 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC
Confidence 4578899999999999999999887654
No 160
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.50 E-value=0.00018 Score=53.24 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=41.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc---e----------------------------------------------EEEE
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV---N----------------------------------------------FNFA 79 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~---~----------------------------------------------~LlV 79 (162)
++..|.|.+|.|||+++..+...... + -++|
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 57788999999999999876543322 1 4799
Q ss_pred EeCCCCCChhhHHHHHhhccccCCCcEEEEecC
Q 039127 80 LDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTR 112 (162)
Q Consensus 80 lDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR 112 (162)
+|++...+...+..+...... .|+++|+.-=
T Consensus 99 VDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 99 VDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp ESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred EecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 999986667777777666553 4667776543
No 161
>PRK07261 topology modulation protein; Provisional
Probab=97.48 E-value=8e-05 Score=53.90 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.3
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.|.|+|++|+||||||+.+......
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~ 26 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC 26 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999876543
No 162
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.46 E-value=0.00035 Score=60.38 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=40.8
Q ss_pred CCCeEEEEEEcCCCcchHHHHHHHHccCCce-----------------------------------EEEEEeCCCCCChh
Q 039127 45 DGGFFVIPIIGMGGSGNTTPALPVYNDKTVN-----------------------------------FNFALDDTWKEKYV 89 (162)
Q Consensus 45 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----------------------------------~LlVlDdv~~~~~~ 89 (162)
.+.-+++-++|++|+||||||..++++..-+ ..||+|.++.....
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~ 402 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA 402 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHH
Confidence 3456788999999999999999998776543 56899999865544
Q ss_pred hHHHHHhhcc
Q 039127 90 DWTNMRDLFA 99 (162)
Q Consensus 90 ~~~~l~~~l~ 99 (162)
..+.++..+.
T Consensus 403 ~Vdvilslv~ 412 (877)
T KOG1969|consen 403 AVDVILSLVK 412 (877)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 163
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.45 E-value=9.1e-05 Score=50.13 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
|.|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998874
No 164
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.44 E-value=0.00012 Score=58.85 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=38.0
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|.++ ++++++..... ..+...+++.++|++|+||||||+.+.+....
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~-g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQ-GLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHh-cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 38999988 77777755330 11235688999999999999999998766543
No 165
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.44 E-value=0.00045 Score=57.16 Aligned_cols=97 Identities=16% Similarity=0.078 Sum_probs=60.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC--------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE-------- 86 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~-------- 86 (162)
..-+.++|.+|+|||++|+.+++..... .+++||+++..
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~ 296 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT 296 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC
Confidence 4567799999999999999998765432 57888886521
Q ss_pred ---ChhhHH---HHHhhccc--cCCCcEEEEecCChhhHhh-h-CC---CCeeeCCCCCHHHHHHHHhhCC
Q 039127 87 ---KYVDWT---NMRDLFAA--VASRSKVIVTTRNQGVASI-M-GT---MPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 87 ---~~~~~~---~l~~~l~~--~~~gs~iiiTTR~~~v~~~-~-~~---~~~~~l~~L~~~~~~~lf~~~a 144 (162)
+.+... .+...+.. ...+..||.||...+.... + .. ...+++...+.++..++|..+.
T Consensus 297 sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 297 SGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred CcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 011111 12222211 1234567777766443322 1 11 2368899999999999998654
No 166
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.42 E-value=0.00087 Score=53.52 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=45.6
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce---------------------------------------------EEEEEeCCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------------------FNFALDDTW 84 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------------------~LlVlDdv~ 84 (162)
-|.|+|..|+||+++|+.+++..... =.|+||++.
T Consensus 24 pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~ 103 (329)
T TIGR02974 24 PVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELA 103 (329)
T ss_pred CEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCEEEeCChH
Confidence 45699999999999999987543211 137899998
Q ss_pred CCChhhHHHHHhhccccC-----------CCcEEEEecCC
Q 039127 85 KEKYVDWTNMRDLFAAVA-----------SRSKVIVTTRN 113 (162)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~-----------~gs~iiiTTR~ 113 (162)
..+......|...+.... ...+||.||..
T Consensus 104 ~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 104 TASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred hCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 777788888877765321 12377877744
No 167
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.41 E-value=0.0042 Score=50.30 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=37.6
Q ss_pred CCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 22 VKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 22 ~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.+.+.+|+. ..+..|+.+. ...-.+.+.|+|..|.|||.+.+.+.+.....
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~---~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~ 57 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNN---SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE 57 (438)
T ss_pred ccCccchHHHHHHHHHHhCCC---CcccceeEEEeccCCCchhHHHHHHHhhcCCc
Confidence 467889998 5556666655 12234556899999999999999999877433
No 168
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0031 Score=50.20 Aligned_cols=68 Identities=6% Similarity=0.055 Sum_probs=51.0
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC-hhhHhhh-CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 76 FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN-QGVASIM-GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
-.+|+|+++..+......|+..+..-.+++.+|++|.+ ..+...+ +.-..+.+.+++.++..+.+...
T Consensus 110 kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 110 RLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred eEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHc
Confidence 48889999988888999999998876666766665554 4454444 33347899999999999888764
No 169
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0011 Score=58.12 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=55.1
Q ss_pred CceeeehH---HHHHHhhcCCCC--CCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSE--TIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
..++|.+. .+.+.+.....- ..+....+....|+.|+|||.||+.+.......
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLI 570 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLI 570 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHh
Confidence 57899988 444443322100 123445677789999999999998886654421
Q ss_pred ------------------------EEEEEeCCCCCChhhHHHHHhhcccc
Q 039127 76 ------------------------FNFALDDTWKEKYVDWTNMRDLFAAV 101 (162)
Q Consensus 76 ------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~ 101 (162)
..+.||.+....++-++-|...|..+
T Consensus 571 GaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 571 GAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred CCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 58888999987888888888888653
No 170
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.38 E-value=0.00055 Score=53.73 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=36.1
Q ss_pred CCCCceeeehH-----HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 20 PSVKLWLGREE-----GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 20 ~~~~~~vGr~~-----~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
-..+.|+|... +.++.|+... .....+-+.|+|-+|.|||++++++.....
T Consensus 31 i~~~rWIgY~~A~~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp 86 (302)
T PF05621_consen 31 IRADRWIGYPRAKEALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHP 86 (302)
T ss_pred HhcCCeecCHHHHHHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCC
Confidence 34678999877 3344444433 234456788999999999999999885543
No 171
>PRK07667 uridine kinase; Provisional
Probab=97.37 E-value=0.00029 Score=51.96 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=33.4
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----EEEEEeCC
Q 039127 31 GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN----FNFALDDT 83 (162)
Q Consensus 31 ~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~LlVlDdv 83 (162)
++++.+.... +...+|+|.|.+|+||||+|+.+....... .++=+||.
T Consensus 5 ~~~~~~~~~~-----~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 5 ELINIMKKHK-----ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred HHHHHHHhcC-----CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 3454454433 455899999999999999999998754321 45566764
No 172
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.34 E-value=0.0012 Score=58.12 Aligned_cols=96 Identities=16% Similarity=0.042 Sum_probs=59.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC--------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE-------- 86 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~-------- 86 (162)
.+-+.++|++|+|||+||+.+++..... .++++|+++..
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~ 566 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF 566 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC
Confidence 3457899999999999999998765432 78999998621
Q ss_pred Ch----hhHHHHHhhccc--cCCCcEEEEecCChhhH-hh-hC---CCCeeeCCCCCHHHHHHHHhhC
Q 039127 87 KY----VDWTNMRDLFAA--VASRSKVIVTTRNQGVA-SI-MG---TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 87 ~~----~~~~~l~~~l~~--~~~gs~iiiTTR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
+. .....+...+.. ...+-.||.||...+.. .. .. -...+.+...+.++-.++|+.+
T Consensus 567 ~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~ 634 (733)
T TIGR01243 567 DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIH 634 (733)
T ss_pred CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHH
Confidence 00 112223333332 12233455566554432 11 21 2346888889999989998754
No 173
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.33 E-value=0.00018 Score=52.94 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=21.3
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+|+|.|.+|+||||||+.+.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999877654
No 174
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.001 Score=57.63 Aligned_cols=121 Identities=18% Similarity=0.145 Sum_probs=72.2
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------ 75 (162)
.+-+|.++ +|++.+--..- .++.+-++++.+|++|+|||++|+.++.....+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL-rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVG 489 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL-RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVG 489 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh-cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeec
Confidence 45678877 67776632210 133467899999999999999999997655433
Q ss_pred -----------------EEEEEeCCCCCC----hhhHHHHHhhc------------ccc-CCCcEE-EEecCCh--hh-H
Q 039127 76 -----------------FNFALDDTWKEK----YVDWTNMRDLF------------AAV-ASRSKV-IVTTRNQ--GV-A 117 (162)
Q Consensus 76 -----------------~LlVlDdv~~~~----~~~~~~l~~~l------------~~~-~~gs~i-iiTTR~~--~v-~ 117 (162)
-|+.+|.|+... -+.-..|+..| .+- --=|+| .|.|-|. .+ .
T Consensus 490 AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~ 569 (906)
T KOG2004|consen 490 AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPP 569 (906)
T ss_pred cCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCCh
Confidence 688899987421 11112222222 111 112444 4455442 11 2
Q ss_pred hhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 118 SIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 118 ~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.....++++++.+-..+|-..+-.++.
T Consensus 570 pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 570 PLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hhhhhhheeeccCccHHHHHHHHHHhh
Confidence 234456688999988888777666553
No 175
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.31 E-value=0.001 Score=59.41 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=31.1
Q ss_pred eeeehHH--HHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 25 WLGREEG--TVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 25 ~vGr~~~--i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
++||+.+ .+...+... ....-.++.+.|..|||||.|++.+.....
T Consensus 2 l~GRe~ev~~Ll~~f~~v---~~g~~~~~lv~G~sGIGKsalv~ev~~~i~ 49 (849)
T COG3899 2 LYGRETELAQLLAAFDRV---SKGRGEVVLVAGESGIGKSALVNEVHKPIT 49 (849)
T ss_pred CCchHhHHHHHHHHHHHH---hCCCeEEEEEeecCCCcHHHHHHHHHHHHh
Confidence 6899882 222222221 233456899999999999999999976543
No 176
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.31 E-value=0.00024 Score=52.77 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce--EEEEEeCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN--FNFALDDT 83 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~LlVlDdv 83 (162)
...+|+|.|.+|+||||||+.++...... .++=.|+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 46799999999999999999998876322 33444553
No 177
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.0026 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|.|..|.|||||.+.++.-.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 488999999999999999997654
No 178
>PRK06762 hypothetical protein; Provisional
Probab=97.29 E-value=0.00021 Score=51.02 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.++.|.|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999998775
No 179
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.004 Score=49.88 Aligned_cols=68 Identities=9% Similarity=-0.027 Sum_probs=49.9
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC-hhhHhhh-CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 76 FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN-QGVASIM-GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
-.+|+|+++..+......|+..+..-..++.+|.+|.+ ..+...+ +.-..+.+.+++.++....+...
T Consensus 110 kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 110 KVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred eEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHc
Confidence 58899999988888889999998876666666665555 4455433 33346889999999988877653
No 180
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.28 E-value=0.0031 Score=49.02 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=53.3
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-----------------------------------
Q 039127 31 GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN----------------------------------- 75 (162)
Q Consensus 31 ~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------------------- 75 (162)
.++..|.... +...+.|+|..|+|||||.+.+.......
T Consensus 100 ~~l~~l~~~~------~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r 173 (270)
T TIGR02858 100 KLLPYLVRNN------RVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIR 173 (270)
T ss_pred HHHHHHHhCC------CeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccc
Confidence 4555565433 35788999999999999999987665421
Q ss_pred ----------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChhhHh
Q 039127 76 ----------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQGVAS 118 (162)
Q Consensus 76 ----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~ 118 (162)
-++++|... ..+.+..+...+. .|..+|+||....+..
T Consensus 174 ~~v~~~~~k~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 174 TDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccchHHHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 477788876 5555555555543 4677888888765543
No 181
>PRK03839 putative kinase; Provisional
Probab=97.27 E-value=0.00019 Score=52.03 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.6
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.|.|.|++|+||||+|+.+++.....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~ 27 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYE 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999886543
No 182
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0007 Score=57.67 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
..+=+.++|++|+|||.||+++.+...+.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 34567799999999999999999998776
No 183
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0019 Score=51.57 Aligned_cols=67 Identities=4% Similarity=0.048 Sum_probs=45.2
Q ss_pred EEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh-hhHhhhC-CCCeeeCCCCCHHHHHHHHhhC
Q 039127 77 NFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ-GVASIMG-TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 77 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
++++|+++..+......+...+.....+..+|++|.+. .+...+. .-..+.+.+++.+++...+...
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 55667787777777777777776544556666676664 3443332 2236889999999988877654
No 184
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.26 E-value=0.00031 Score=52.22 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=27.2
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce--EEEEEeC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN--FNFALDD 82 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~LlVlDd 82 (162)
...+++|.|.+|+||||||+.+....... .++-.|+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~ 42 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDN 42 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccc
Confidence 45789999999999999999998764421 3444455
No 185
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.24 E-value=0.0025 Score=45.61 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=46.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce------------------------------------------------EEEEE
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN------------------------------------------------FNFAL 80 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------------------------------~LlVl 80 (162)
.+++|.|..|.|||||.+.++...... -++++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEE
Confidence 488999999999999999997543211 68888
Q ss_pred eCCCC-CChhhHHHHHhhcccc-CCCcEEEEecCChhhH
Q 039127 81 DDTWK-EKYVDWTNMRDLFAAV-ASRSKVIVTTRNQGVA 117 (162)
Q Consensus 81 Ddv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTTR~~~v~ 117 (162)
|+-.. .+......+...+... ..|..+|++|.+....
T Consensus 107 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 107 DEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 97642 2444444554444432 3366788888886643
No 186
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=97.23 E-value=0.0014 Score=48.86 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=32.1
Q ss_pred EEEEEeCCCCC-ChhhHHHHHhhccccCCCcEEEEecCChhhHhhh
Q 039127 76 FNFALDDTWKE-KYVDWTNMRDLFAAVASRSKVIVTTRNQGVASIM 120 (162)
Q Consensus 76 ~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~~~ 120 (162)
-+++|||++.. +......+...+....+.+.+||||.++.+...+
T Consensus 160 p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 160 PFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999843 5666677777777767778999999998877654
No 187
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.23 E-value=0.00056 Score=49.58 Aligned_cols=52 Identities=19% Similarity=0.023 Sum_probs=41.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc----e-----------------------------------EEEEEeCCCCCCh
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV----N-----------------------------------FNFALDDTWKEKY 88 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~----~-----------------------------------~LlVlDdv~~~~~ 88 (162)
..++.+.|+.|+|||.||+.+...... . -+++||+++....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 467889999999999999888766652 1 5899999997777
Q ss_pred -----------hhHHHHHhhcc
Q 039127 89 -----------VDWTNMRDLFA 99 (162)
Q Consensus 89 -----------~~~~~l~~~l~ 99 (162)
.-|..|...+.
T Consensus 83 ~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 83 SNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp TTTTCSHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHhc
Confidence 77888887774
No 188
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.23 E-value=0.00026 Score=51.35 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+.+++.|.|.+|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999988554
No 189
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.23 E-value=0.0015 Score=57.07 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=58.0
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-----------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN----------------------- 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------- 75 (162)
...++|+.. .+.+.+..-. ..-.-|.|+|..|+|||++|+.+++.....
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a-----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg 449 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVA-----QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFG 449 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHh-----CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcC
Confidence 357999887 3333332211 112356699999999999999998643211
Q ss_pred ----------------------EEEEEeCCCCCChhhHHHHHhhccccC-----------CCcEEEEecCCh
Q 039127 76 ----------------------FNFALDDTWKEKYVDWTNMRDLFAAVA-----------SRSKVIVTTRNQ 114 (162)
Q Consensus 76 ----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTTR~~ 114 (162)
=.|+||++.......+..|...+.... ...++|.||...
T Consensus 450 ~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 450 HERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 138999999777788888877765321 234788888553
No 190
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.23 E-value=0.00031 Score=51.72 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=27.5
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCceEEEEEeCCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVNFNFALDDTW 84 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~~LlVlDdv~ 84 (162)
+|+|.|.+|+||||||+.+......-.++=+||.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~ 35 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFF 35 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEcccccc
Confidence 47899999999999999999876433455567764
No 191
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.22 E-value=0.0029 Score=44.35 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=46.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce------------------------------------EEEEEeCCCC-CChhhH
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN------------------------------------FNFALDDTWK-EKYVDW 91 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------------------~LlVlDdv~~-~~~~~~ 91 (162)
.+++|.|..|.|||||++.+....... -++++|+-.. .+....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~ 106 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 488999999999999999998765321 6888997642 245555
Q ss_pred HHHHhhccccCCCcEEEEecCChhhHh
Q 039127 92 TNMRDLFAAVASRSKVIVTTRNQGVAS 118 (162)
Q Consensus 92 ~~l~~~l~~~~~gs~iiiTTR~~~v~~ 118 (162)
..+...+... +..||++|.+.....
T Consensus 107 ~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 107 EALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 5555555433 245788887765543
No 192
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.0041 Score=53.76 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=31.8
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHc
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
..+++|.+. ++..++.... ......+++.|+|.+|+||||+++.++.
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~--~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQV--LENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc--cccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 357778777 5555554322 1122345789999999999999987754
No 193
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.22 E-value=0.0029 Score=45.79 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|.|..|+|||||++.+....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999987654
No 194
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.22 E-value=0.00033 Score=47.19 Aligned_cols=27 Identities=37% Similarity=0.335 Sum_probs=23.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
..+.|+|.+|+||||+++.+.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 467899999999999999998877654
No 195
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.003 Score=53.99 Aligned_cols=97 Identities=14% Similarity=0.045 Sum_probs=64.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC-----C--
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE-----K-- 87 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~-----~-- 87 (162)
..=|.+||++|+|||-||++++|..... |.|.||.++.. +
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~ 624 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG 624 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC
Confidence 4456799999999999999999988765 89999988631 1
Q ss_pred ----hhhHHHHHhhccc--cCCCcEEEEecCChhhH-h-hhCC---CCeeeCCCCCHHHHHHHHhhCC
Q 039127 88 ----YVDWTNMRDLFAA--VASRSKVIVTTRNQGVA-S-IMGT---MPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 88 ----~~~~~~l~~~l~~--~~~gs~iiiTTR~~~v~-~-~~~~---~~~~~l~~L~~~~~~~lf~~~a 144 (162)
..-...|+.-+.. ...|--||-.|...++- . .+.+ +..+.++.-+.+|-..+++...
T Consensus 625 s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTIT 692 (802)
T ss_pred chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHh
Confidence 1223334444442 23455666666554432 2 2222 3456788888889889988765
No 196
>PRK13695 putative NTPase; Provisional
Probab=97.21 E-value=0.00097 Score=48.11 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=18.5
Q ss_pred EEEEEcCCCcchHHHHHHHHcc
Q 039127 50 VIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.+.|.|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999986543
No 197
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.21 E-value=0.0019 Score=56.86 Aligned_cols=96 Identities=13% Similarity=0.057 Sum_probs=56.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCCC-------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKEK------- 87 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~~------- 87 (162)
.+-+.++|.+|+|||+||+.+++..... .++++|+++...
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~ 291 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT 291 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc
Confidence 3567799999999999999998765332 579999986310
Q ss_pred ----hhhHHHHHhhcccc-CCCcEEEE-ecCChh-hHhhhC----CCCeeeCCCCCHHHHHHHHhhC
Q 039127 88 ----YVDWTNMRDLFAAV-ASRSKVIV-TTRNQG-VASIMG----TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 88 ----~~~~~~l~~~l~~~-~~gs~iii-TTR~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
......|...+... ..+..+++ ||.... +...+. -...+.+...+.++-.++++.+
T Consensus 292 ~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~ 358 (733)
T TIGR01243 292 GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVH 358 (733)
T ss_pred chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHH
Confidence 11223344433321 23334444 444322 211111 1235778888888877777643
No 198
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.20 E-value=0.0012 Score=52.61 Aligned_cols=86 Identities=15% Similarity=0.055 Sum_probs=54.9
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------ 75 (162)
..++|+.. ++.+.+..-. ..-.-|.|+|..|+||+++|+.++......
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a-----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~ 80 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA-----PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH 80 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccc
Confidence 35788887 4444433222 112345699999999999999987443211
Q ss_pred ---------------------EEEEEeCCCCCChhhHHHHHhhccccC-----------CCcEEEEecCC
Q 039127 76 ---------------------FNFALDDTWKEKYVDWTNMRDLFAAVA-----------SRSKVIVTTRN 113 (162)
Q Consensus 76 ---------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTTR~ 113 (162)
=.|+||++.......+..|...+..+. ...+||.||..
T Consensus 81 ~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred cccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 137888888777777788877665321 12477887755
No 199
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.17 E-value=0.00051 Score=55.55 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=26.0
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.....+.|||++|.|||.+|+.+++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 346789999999999999999999887655
No 200
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.16 E-value=0.0024 Score=48.71 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=46.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce----------------------------EEEEEeCCCCC-ChhhHHHHHhhc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN----------------------------FNFALDDTWKE-KYVDWTNMRDLF 98 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------------~LlVlDdv~~~-~~~~~~~l~~~l 98 (162)
..-|-+||.-|.||++|++++.+....+ |++..||+.-+ +...+..|+..+
T Consensus 85 ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~L 164 (287)
T COG2607 85 ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSAL 164 (287)
T ss_pred ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHh
Confidence 4456799999999999999998776554 77888998643 456677777777
Q ss_pred ccc---CCCcEEEEecCC
Q 039127 99 AAV---ASRSKVIVTTRN 113 (162)
Q Consensus 99 ~~~---~~gs~iiiTTR~ 113 (162)
..+ .+...++..|.|
T Consensus 165 eG~ve~rP~NVl~YATSN 182 (287)
T COG2607 165 EGGVEGRPANVLFYATSN 182 (287)
T ss_pred cCCcccCCCeEEEEEecC
Confidence 632 333445554444
No 201
>PTZ00301 uridine kinase; Provisional
Probab=97.16 E-value=0.00035 Score=52.36 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=27.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC-----ce-EEEEEeCCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT-----VN-FNFALDDTW 84 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~-----~~-~LlVlDdv~ 84 (162)
..+|+|.|.+|+||||||+.+.+... .. .++-.|+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 57899999999999999988865431 11 355557654
No 202
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0018 Score=50.80 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=64.8
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC--------------------------ce---------
Q 039127 31 GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT--------------------------VN--------- 75 (162)
Q Consensus 31 ~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~--------------------------~~--------- 75 (162)
.+..+..... .-...+.++|++|+||||+|..+.+... ..
T Consensus 12 ~l~~~~~~~~-----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~ 86 (325)
T COG0470 12 RLLVQALESG-----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRK 86 (325)
T ss_pred HHHHHHHhcC-----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCC
Confidence 4555555332 1223588999999999999987765332 10
Q ss_pred ------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC-hhhHhhhCC-CCeeeCC
Q 039127 76 ------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN-QGVASIMGT-MPAYELK 129 (162)
Q Consensus 76 ------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~-~~v~~~~~~-~~~~~l~ 129 (162)
-++++|+++..+.+....++..+........+|++|.+ ..+...+.+ ...+++.
T Consensus 87 ~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~ 166 (325)
T COG0470 87 IDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFK 166 (325)
T ss_pred CcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecC
Confidence 68899999987788888888888776777777777763 333332322 2256666
Q ss_pred CCCHHH
Q 039127 130 KLVNDN 135 (162)
Q Consensus 130 ~L~~~~ 135 (162)
+.+...
T Consensus 167 ~~~~~~ 172 (325)
T COG0470 167 PPSRLE 172 (325)
T ss_pred CchHHH
Confidence 544333
No 203
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.0037 Score=46.80 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=21.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
+.|.+.|.+|+||||+|+++....+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467788999999999999987665443
No 204
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.15 E-value=0.0026 Score=46.38 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=45.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce--------------------------------------EEEEEeCCCC-CChh
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN--------------------------------------FNFALDDTWK-EKYV 89 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~--------------------------------------~LlVlDdv~~-~~~~ 89 (162)
.+++|+|..|+|||||.+.+..-.... -++++|.-.. .+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~ 105 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE 105 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 489999999999999999997654322 5788887542 2444
Q ss_pred hHHHHHhhcccc-CC-CcEEEEecCChhhHh
Q 039127 90 DWTNMRDLFAAV-AS-RSKVIVTTRNQGVAS 118 (162)
Q Consensus 90 ~~~~l~~~l~~~-~~-gs~iiiTTR~~~v~~ 118 (162)
....+...+... .. +..||++|.+.....
T Consensus 106 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 106 QRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 444444444331 22 256777777765544
No 205
>PRK06547 hypothetical protein; Provisional
Probab=97.14 E-value=0.00066 Score=49.27 Aligned_cols=37 Identities=32% Similarity=0.368 Sum_probs=29.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCceEEEEEeCCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVNFNFALDDTW 84 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~LlVlDdv~ 84 (162)
...+|.|.|.+|+||||+|+.+...... .++-+||+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~-~~~~~d~~~ 50 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGF-QLVHLDDLY 50 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCC-Ceeccccee
Confidence 4778999999999999999999876543 244557765
No 206
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.14 E-value=0.00059 Score=47.15 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=37.4
Q ss_pred EEEEcCCCcchHHHHHHHHccCCce-------------------------------------EEEEEeCCCCCChhhHHH
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTVN-------------------------------------FNFALDDTWKEKYVDWTN 93 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~~-------------------------------------~LlVlDdv~~~~~~~~~~ 93 (162)
+-|+|.+|+|||++|+.+....... -++.+|.+......-...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappktQsA 81 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPKTQSA 81 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HHHHHH
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHHHHHH
Confidence 4689999999999999997765433 478889887655555555
Q ss_pred HHhhcccc----------CCCcEEEEecCCh
Q 039127 94 MRDLFAAV----------ASRSKVIVTTRNQ 114 (162)
Q Consensus 94 l~~~l~~~----------~~gs~iiiTTR~~ 114 (162)
+....... -+...+++.|+|.
T Consensus 82 lLeam~Er~Vt~~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 82 LLEAMEERQVTIDGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp HHHHHHHSEEEETTEEEE--SS-EEEEEE-T
T ss_pred HHHHHHcCeEEeCCEEEECCCcEEEEEecCc
Confidence 55544321 1122467777775
No 207
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.13 E-value=0.0027 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.+++|+|..|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999988654
No 208
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.13 E-value=0.00035 Score=42.88 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHcc
Q 039127 50 VIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
++.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999998887
No 209
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.13 E-value=0.00087 Score=50.64 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=30.1
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCce----EE-EEEeCCC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTVN----FN-FALDDTW 84 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~L-lVlDdv~ 84 (162)
....+++|.|..|+|||||++.+....+.. .+ +-+||..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 457899999999999999999888765543 23 6667654
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0061 Score=48.98 Aligned_cols=68 Identities=3% Similarity=-0.001 Sum_probs=49.5
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEE-ecCChhhHhhh-CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 76 FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIV-TTRNQGVASIM-GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-TTR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
-++|+|+++..+...+..|+..+..-.+++.+|. |++...+...+ +.-..+.+.+++.++..+.+...
T Consensus 134 kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 134 RVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred eEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 4778888888888888899888887666665554 55545554433 33347899999999999888764
No 211
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.12 E-value=0.0015 Score=49.88 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=20.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
-.++|+|..|+|||+|...+.....
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc
Confidence 3567999999999999988765443
No 212
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.11 E-value=0.0031 Score=54.47 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=26.2
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHH-HHHHHHccCCc
Q 039127 31 GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTT-PALPVYNDKTV 74 (162)
Q Consensus 31 ~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTt-La~~~~~~~~~ 74 (162)
+++..+.... +|.|+|..|+|||| |++.+|.+-..
T Consensus 363 ~ll~~ir~n~---------vvvivgETGSGKTTQl~QyL~edGY~ 398 (1042)
T KOG0924|consen 363 QLLSVIRENQ---------VVVIVGETGSGKTTQLAQYLYEDGYA 398 (1042)
T ss_pred HHHHHHhhCc---------EEEEEecCCCCchhhhHHHHHhcccc
Confidence 3555555544 99999999999988 88888776543
No 213
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.11 E-value=0.0029 Score=45.94 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|.|..|+|||||.+.++...
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999987653
No 214
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.11 E-value=0.0018 Score=52.38 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=25.8
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
...+=+-|||..|.|||.|+-.+|+....+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~ 89 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIK 89 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcc
Confidence 346778899999999999999999987763
No 215
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0028 Score=51.38 Aligned_cols=48 Identities=21% Similarity=0.078 Sum_probs=30.9
Q ss_pred ceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 24 LWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 24 ~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+.+|++ .+...|..-- .+....-+.|+|.+|.|||+.++.+......
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~---~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~ 68 (366)
T COG1474 18 ELPHREEEINQLASFLAPAL---RGERPSNIIIYGPTGTGKTATVKFVMEELEE 68 (366)
T ss_pred cccccHHHHHHHHHHHHHHh---cCCCCccEEEECCCCCCHhHHHHHHHHHHHh
Confidence 3889999 3333332211 1112223889999999999999998766543
No 216
>PHA02774 E1; Provisional
Probab=97.10 E-value=0.0022 Score=54.60 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=31.2
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCce-------------------EEEEEeCCC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTVN-------------------FNFALDDTW 84 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------~LlVlDdv~ 84 (162)
++..-+.|+|++|.|||.+|..+.+-...+ -++||||+-
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~FwLqpl~d~ki~vlDD~t 489 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHFWLQPLADAKIALLDDAT 489 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccccccchhccCCEEEEecCc
Confidence 445678899999999999998887664322 689999994
No 217
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.09 E-value=0.0029 Score=44.24 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.|+++|.+|+|||||+..+.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 46799999999999999987654
No 218
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.08 E-value=0.0036 Score=49.57 Aligned_cols=49 Identities=22% Similarity=0.443 Sum_probs=35.8
Q ss_pred CCceeeehH-------HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 22 VKLWLGREE-------GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 22 ~~~~vGr~~-------~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+|.+. +++++|..-. ..+.+...|.++|.+|+|||++...+....
T Consensus 7 ~~~w~g~~~~~~~tq~~l~~~l~~l~--~~~~~~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 7 PREWVGIQQFPPATQTKLLELLGKLK--EEDVSSLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred CcceeccccCCHHHHHHHHHHHHhcc--cccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 367888766 6666665433 223456678899999999999999988654
No 219
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.08 E-value=0.0025 Score=53.77 Aligned_cols=89 Identities=12% Similarity=0.058 Sum_probs=59.7
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
....++|+.. ++.+.+..-. ..-.-|.|+|..|+||+++|+.+++.....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lf 259 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-----ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELF 259 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-----CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhc
Confidence 3467999988 4444443322 112356699999999999999998653311
Q ss_pred -----------------------EEEEEeCCCCCChhhHHHHHhhccccC-----------CCcEEEEecCCh
Q 039127 76 -----------------------FNFALDDTWKEKYVDWTNMRDLFAAVA-----------SRSKVIVTTRNQ 114 (162)
Q Consensus 76 -----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTTR~~ 114 (162)
=.|+||++.......+..|...+..+. ...+||.||...
T Consensus 260 G~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 260 GHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred CccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 127899998777888888887765422 134788887553
No 220
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.08 E-value=0.0039 Score=43.77 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
|.++|.+|+|||+|...+.+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6799999999999999988765
No 221
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0018 Score=55.43 Aligned_cols=99 Identities=15% Similarity=0.070 Sum_probs=61.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC-------
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE------- 86 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~------- 86 (162)
..+-|-++|++|+|||++|+.+.+..... +++.||.++..
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~ 546 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS 546 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC
Confidence 45677799999999999999999887665 88999987631
Q ss_pred C----hhhHHHHHhhccccCCCcEEEE---ecCChhhHh-hhC---CCCeeeCCCCCHHHHHHHHhhCCC
Q 039127 87 K----YVDWTNMRDLFAAVASRSKVIV---TTRNQGVAS-IMG---TMPAYELKKLVNDNCLLIFSQHPS 145 (162)
Q Consensus 87 ~----~~~~~~l~~~l~~~~~gs~iii---TTR~~~v~~-~~~---~~~~~~l~~L~~~~~~~lf~~~af 145 (162)
. ......|+..+........|+| |.|...+-. .+. -+..+.+..-+.+-..++|+.++-
T Consensus 547 ~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 547 SSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred ccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 0 1112233333332222223333 334433322 233 244677887788888899987753
No 222
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.00043 Score=49.60 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
...+.|.|++|+||||+++.+.+..+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 4578899999999999999998765544
No 223
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.07 E-value=0.00046 Score=49.25 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
...|.++|++|+||||+|+.+......
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 357889999999999999999988754
No 224
>PRK00625 shikimate kinase; Provisional
Probab=97.07 E-value=0.00042 Score=50.37 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=21.4
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.|.++||+|+||||+++.+.+....
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999877543
No 225
>PRK06217 hypothetical protein; Validated
Probab=97.06 E-value=0.00051 Score=50.07 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=25.3
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCceEEEEEeCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVNFNFALDDT 83 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~~LlVlDdv 83 (162)
.|.|.|.+|+||||||+.+....... .+=+|++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~ 35 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDY 35 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCce
Confidence 58899999999999999999876543 2334444
No 226
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.06 E-value=0.0023 Score=45.61 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=18.6
Q ss_pred EEEEcCCCcchHHHHHHHHcc
Q 039127 51 IPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~ 71 (162)
|.|+|.+|+|||+|...+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998765
No 227
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.05 E-value=0.004 Score=46.47 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||++.++.-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999997543
No 228
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.0095 Score=47.44 Aligned_cols=68 Identities=6% Similarity=0.003 Sum_probs=48.4
Q ss_pred EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC-hhhHhhh-CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 76 FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN-QGVASIM-GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
-++|+|+++..+...-..|+..+..-..++.+|++|.+ ..+...+ +.-..+.+.+++.+++...+...
T Consensus 115 kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 115 QVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ 184 (319)
T ss_pred EEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc
Confidence 47888888877777888888888766667766666554 4444333 33346889999999988888754
No 229
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.04 E-value=0.00043 Score=50.17 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.2
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+|.|+|++|+||||+|+.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999987765
No 230
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.03 E-value=0.00061 Score=48.68 Aligned_cols=33 Identities=36% Similarity=0.436 Sum_probs=25.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce--EEEEEe
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN--FNFALD 81 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~--~LlVlD 81 (162)
.+|-+.|.+|+||||||+.+....... -..+||
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 578899999999999999998876544 344554
No 231
>PRK04040 adenylate kinase; Provisional
Probab=97.02 E-value=0.00056 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+|.|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998776
No 232
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.02 E-value=0.00081 Score=57.27 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=37.2
Q ss_pred CCCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 20 PSVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 20 ~~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+.-.+++|.++ .+++.|..... ..+...+++.++|++|+|||+||+.+.+-..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~-gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQ-GLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHH-hcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 44457899999 77777722110 0123457999999999999999999876443
No 233
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.01 E-value=0.0023 Score=45.28 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.0
Q ss_pred EEEEcCCCcchHHHHHHHHcc
Q 039127 51 IPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~ 71 (162)
|+++|.+|+|||||+..+.+.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999887654
No 234
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.01 E-value=0.00055 Score=49.43 Aligned_cols=27 Identities=41% Similarity=0.537 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...+|.+.|+.|+||||+|+.++....
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999987654
No 235
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.00 E-value=0.0044 Score=44.66 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||.+.+....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 488999999999999999997643
No 236
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.99 E-value=0.00064 Score=49.13 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|.|+.|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368899999999999999987653
No 237
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.98 E-value=0.0033 Score=54.59 Aligned_cols=95 Identities=15% Similarity=0.051 Sum_probs=58.1
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC----------
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE---------- 86 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~---------- 86 (162)
-+.++|.+|.|||++|+.+.+..... +++++|+++..
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g 266 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG 266 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC
Confidence 48899999999999999998765432 68999998742
Q ss_pred ChhhHHH----HHhhccc--cCCCcEEEEecCChhhHh--hhCC---CCeeeCCCCCHHHHHHHHhhCC
Q 039127 87 KYVDWTN----MRDLFAA--VASRSKVIVTTRNQGVAS--IMGT---MPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 87 ~~~~~~~----l~~~l~~--~~~gs~iiiTTR~~~v~~--~~~~---~~~~~l~~L~~~~~~~lf~~~a 144 (162)
....+.. +...+.. ...+.-+|.||...+... ...+ +..+.+...+.++-.++|+.+.
T Consensus 267 ~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 267 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred CchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 0112222 2222221 122344555776654322 1211 3467788888888888887654
No 238
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.98 E-value=0.00054 Score=48.06 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
++.+.|++|+||||+|+.+.....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC
Confidence 367899999999999999988754
No 239
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.98 E-value=0.00085 Score=49.95 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...+.++|+|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35678889999999999999998754
No 240
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.98 E-value=0.00083 Score=48.44 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..++.+.|.+|+||||+|+.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999988765
No 241
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.95 E-value=0.00066 Score=49.10 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4788999999999999999987643
No 242
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.95 E-value=0.00049 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=17.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
+.|.|+|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47889999999999999998764
No 243
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.94 E-value=0.00082 Score=48.53 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999998854
No 244
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.94 E-value=0.0026 Score=49.50 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=27.1
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 31 GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 31 ~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++.++... . -+.++|..|+|||.+++......
T Consensus 24 ~ll~~l~~~~-------~-pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 24 YLLDLLLSNG-------R-PVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHCT-------E-EEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHcC-------C-cEEEECCCCCchhHHHHhhhccC
Confidence 6788888766 3 45699999999999999877553
No 245
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.94 E-value=0.0048 Score=45.67 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.-++++|.+|+|||||+..+.++....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~ 32 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE 32 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcc
Confidence 467899999999999999998776653
No 246
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.93 E-value=0.0006 Score=50.20 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=25.4
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc-e-EEEEEeCCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV-N-FNFALDDTW 84 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~-~-~LlVlDdv~ 84 (162)
+++|.|..|+||||||+.+...... . .++=.||..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 4789999999999999999776421 1 445556543
No 247
>PRK13947 shikimate kinase; Provisional
Probab=96.93 E-value=0.00069 Score=48.51 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.5
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.|.|+|++|+||||+|+.+.+.....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999887643
No 248
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.92 E-value=0.0059 Score=51.72 Aligned_cols=89 Identities=15% Similarity=0.032 Sum_probs=57.2
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
.-..++|... ++++.+..-. ..+. -|.|+|..|+||+.+|+.+++.....
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A----~~~~-pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elF 276 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLA----MLDA-PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELF 276 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHh----CCCC-CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhc
Confidence 3467899887 4444442211 0112 36699999999999999986432211
Q ss_pred -----------------------EEEEEeCCCCCChhhHHHHHhhccccC---C--------CcEEEEecCCh
Q 039127 76 -----------------------FNFALDDTWKEKYVDWTNMRDLFAAVA---S--------RSKVIVTTRNQ 114 (162)
Q Consensus 76 -----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iiiTTR~~ 114 (162)
=.|+||+++..+......|...+..+. . ..+||.||...
T Consensus 277 G~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 277 GHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred CCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 136899999777777888877775421 1 23788877653
No 249
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.0075 Score=43.43 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|.|||||.+.++...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999997653
No 250
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0066 Score=50.97 Aligned_cols=100 Identities=14% Similarity=-0.010 Sum_probs=65.1
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC------
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE------ 86 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~------ 86 (162)
...+.+-++|++|.|||.||+++++..... +.+.+|.++..
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~ 353 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP 353 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCC
Confidence 445678899999999999999999955544 88999988631
Q ss_pred C-----hhhHHHHHhhccccCC--CcEEEEecCChhhHhh--hC--C-CCeeeCCCCCHHHHHHHHhhCCC
Q 039127 87 K-----YVDWTNMRDLFAAVAS--RSKVIVTTRNQGVASI--MG--T-MPAYELKKLVNDNCLLIFSQHPS 145 (162)
Q Consensus 87 ~-----~~~~~~l~~~l~~~~~--gs~iiiTTR~~~v~~~--~~--~-~~~~~l~~L~~~~~~~lf~~~af 145 (162)
+ ......+...+..... +..+|-+|........ .. . ...+.+..-+.++....|+.+.-
T Consensus 354 ~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 354 SEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred CCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 1 1233444444432222 3334555554433221 11 1 34688999999999999998753
No 251
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.90 E-value=0.0052 Score=46.48 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..++|+|+.|+|||||...+..-.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 489999999999999999886443
No 252
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.90 E-value=0.007 Score=48.24 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=19.9
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-|.|.|.+|+|||++|+.+....
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH
Confidence 57899999999999999986643
No 253
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.0083 Score=45.22 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|.|..|+|||||.+.+..-.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 488999999999999999997654
No 254
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.0007 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.3
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999998854
No 255
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.87 E-value=0.0043 Score=49.42 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=48.4
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------ 75 (162)
..++|+++ .+...++... -+-+.|.+|+|||+||+.+.......
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~---------~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~ 94 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG---------HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAAL 94 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC---------CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhh
Confidence 34889887 3333444443 45699999999999999997665533
Q ss_pred -----------------E--EEEEeCCCCCChhhHHHHHhhcc
Q 039127 76 -----------------F--NFALDDTWKEKYVDWTNMRDLFA 99 (162)
Q Consensus 76 -----------------~--LlVlDdv~~~~~~~~~~l~~~l~ 99 (162)
. ++.+|.+++........|...+.
T Consensus 95 ~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 95 LLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred hccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 3 88999999777766666666554
No 256
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.87 E-value=0.0064 Score=42.62 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=19.5
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
|+++|.+|+|||+|+..+.+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999987654
No 257
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.87 E-value=0.00068 Score=51.10 Aligned_cols=35 Identities=23% Similarity=0.119 Sum_probs=26.3
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc-----e-EEEEEeCCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV-----N-FNFALDDTW 84 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~-----~-~LlVlDdv~ 84 (162)
+++|.|..|+||||||+.+...... . .++-+||..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 4789999999999999998876531 1 455567764
No 258
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.86 E-value=0.0016 Score=48.17 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=24.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc---e-EEEEEeCCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV---N-FNFALDDTW 84 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~---~-~LlVlDdv~ 84 (162)
+++.++|+.|+||||.+-+++..... + .|+-.|...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 68999999999999977655443322 2 566667653
No 259
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.85 E-value=0.0095 Score=44.45 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.+++|+|..|.|||||++.+...
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48899999999999999998754
No 260
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.01 Score=44.65 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=20.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|.|||||++.+....
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 488999999999999999986553
No 261
>PRK13975 thymidylate kinase; Provisional
Probab=96.84 E-value=0.001 Score=48.74 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=23.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
..|+|.|+.|+||||+|+.+......
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999987663
No 262
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.83 E-value=0.00076 Score=46.76 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.1
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+|.|.|..|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987654
No 263
>PRK13949 shikimate kinase; Provisional
Probab=96.83 E-value=0.001 Score=48.09 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.9
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.|.|+|++|+||||+++.+......
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5789999999999999999887653
No 264
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.83 E-value=0.0057 Score=48.03 Aligned_cols=60 Identities=13% Similarity=0.276 Sum_probs=38.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCceEEEEEeCCCCCChhhHHHHHhhcccc--CCCcEEEEecCCh
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVNFNFALDDTWKEKYVDWTNMRDLFAAV--ASRSKVIVTTRNQ 114 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~--~~gs~iiiTTR~~ 114 (162)
..++.|.|+.|+||||+++.+...- ..++|++. ...+..+....... .+.-.+.+..|+.
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~~g----~~~~d~~~---~~L~~~l~~~~~~~~~~~~~av~iD~r~~ 67 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALEDLG----YYCVDNLP---PSLLPKLVELLAQSGGIRKVAVVIDVRSR 67 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHcC----CeEECCcC---HHHHHHHHHHHHhcCCCCCeEEEEccCch
Confidence 4689999999999999999985332 24457763 44555554444322 1233566666654
No 265
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.82 E-value=0.001 Score=54.25 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=27.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce------EEEEEeC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN------FNFALDD 82 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~------~LlVlDd 82 (162)
-....|+|.+|+||||||+.+|+....+ |+++.|+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE 209 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE 209 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC
Confidence 3567899999999999999999866542 5566666
No 266
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.82 E-value=0.0075 Score=42.30 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.1
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+.++|.+|+|||||+..+.+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999987544
No 267
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.82 E-value=0.0047 Score=54.15 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
-..++|+|..|+|||||++.+..-....
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3589999999999999999997666543
No 268
>PRK14530 adenylate kinase; Provisional
Probab=96.82 E-value=0.00087 Score=50.09 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.3
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.|.|+|++|+||||+|+.+.......
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~ 30 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVE 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 57899999999999999998776543
No 269
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.81 E-value=0.0012 Score=49.98 Aligned_cols=32 Identities=31% Similarity=0.334 Sum_probs=23.7
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc---eEEEEEe
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV---NFNFALD 81 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~---~~LlVlD 81 (162)
.|+|+|-||+||||+|..+..+... ..+|++|
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVD 36 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVD 36 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEe
Confidence 5899999999999998774333222 2678887
No 270
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.00063 Score=51.89 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||.+.+..-.+
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999976544
No 271
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.81 E-value=0.0034 Score=53.79 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=30.8
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCceEEEEEeCC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTVNFNFALDDT 83 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~LlVlDdv 83 (162)
....+|+|.|..|+||||||+.+.........+-+||.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 45789999999999999999999877543356677775
No 272
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.001 Score=49.58 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=25.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
..+|+|-||=|+||||||+.+.++....
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc
Confidence 4689999999999999999999998854
No 273
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.80 E-value=0.0042 Score=45.68 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.--|.++|.+|+|||+|+..+.+.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 445779999999999999988654
No 274
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.79 E-value=0.0011 Score=48.87 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
-.+++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45899999999999999999987653
No 275
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.79 E-value=0.0013 Score=43.93 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.0
Q ss_pred EEEEcCCCcchHHHHHHHHccCCc
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
|.|+|..|+|||||.+.+......
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 679999999999999999877654
No 276
>PRK04132 replication factor C small subunit; Provisional
Probab=96.79 E-value=0.011 Score=52.63 Aligned_cols=88 Identities=14% Similarity=0.097 Sum_probs=62.8
Q ss_pred CCCcchHHHHHHHHccC-----Cce---------------------------------EEEEEeCCCCCChhhHHHHHhh
Q 039127 56 MGGSGNTTPALPVYNDK-----TVN---------------------------------FNFALDDTWKEKYVDWTNMRDL 97 (162)
Q Consensus 56 ~gGiGKTtLa~~~~~~~-----~~~---------------------------------~LlVlDdv~~~~~~~~~~l~~~ 97 (162)
+-++||||+|..++++. ... -++|+|+++..+...+..|+..
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~ 653 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRT 653 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHH
Confidence 56899999999998874 111 4899999998888899999888
Q ss_pred ccccCCCcEEEEecC-ChhhHhhhC-CCCeeeCCCCCHHHHHHHHhhC
Q 039127 98 FAAVASRSKVIVTTR-NQGVASIMG-TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 98 l~~~~~gs~iiiTTR-~~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
+..-....++|.++. ...+...+. ....+.+.+++.++....+...
T Consensus 654 lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 654 MEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred hhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHH
Confidence 876444555555444 444433332 2347999999998887776644
No 277
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.79 E-value=0.001 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=18.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
+.|+|.|-||+||||+|..+...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~ 23 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAA 23 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHH
Confidence 36889999999999988766543
No 278
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.79 E-value=0.0044 Score=44.00 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.1
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
++++|.+|+|||+|.+.+.+..
T Consensus 4 i~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999987554
No 279
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.78 E-value=0.0064 Score=44.97 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=18.6
Q ss_pred EEEEEcCCCcchHHHHHHHHcc
Q 039127 50 VIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.+.|.|..|+||||++..+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999875543
No 280
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0019 Score=51.83 Aligned_cols=99 Identities=17% Similarity=0.120 Sum_probs=61.5
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC------
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE------ 86 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~------ 86 (162)
...+=|.++|++|.|||-||++++++-... +++.+|.++.-
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d 262 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFD 262 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhccccc
Confidence 345667799999999999999999987654 88889987631
Q ss_pred -----ChhhHHHHHhhc---ccc--CCCcEEEEecCChhhHh--hhCC---CCeeeCCCCCHHHHHHHHhhCC
Q 039127 87 -----KYVDWTNMRDLF---AAV--ASRSKVIVTTRNQGVAS--IMGT---MPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 87 -----~~~~~~~l~~~l---~~~--~~gs~iiiTTR~~~v~~--~~~~---~~~~~l~~L~~~~~~~lf~~~a 144 (162)
+.+-.-.+...| ... ...-+||..|...++.. .+.+ +..+++..-+.+--.++|+-++
T Consensus 263 ~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt 335 (406)
T COG1222 263 SGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT 335 (406)
T ss_pred CCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh
Confidence 222232333332 221 22347888776655432 2222 3357777555666667776554
No 281
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.78 E-value=0.0015 Score=48.25 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...++.|+|.+|+||||||+.+....
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998764
No 282
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.77 E-value=0.00089 Score=47.64 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=23.7
Q ss_pred EEEEcCCCcchHHHHHHHHccCCceEEEEEeCC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTVNFNFALDDT 83 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~~~LlVlDdv 83 (162)
+.++|++|+||||+|+.+.+.... .++=.|++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~-~~v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGA-KFIEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCC-eEEeCccc
Confidence 468999999999999999887642 33334554
No 283
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.77 E-value=0.00099 Score=48.55 Aligned_cols=35 Identities=40% Similarity=0.491 Sum_probs=26.6
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc---e-EEEEEeCCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV---N-FNFALDDTW 84 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~---~-~LlVlDdv~ 84 (162)
+|+|.|.+|+||||||+.+...... . ..+-+||..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 4789999999999999999877432 1 455567665
No 284
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.77 E-value=0.0014 Score=47.83 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.0
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.++|+|+.|+|||||++.+......
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 6889999999999999999877543
No 285
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.77 E-value=0.0069 Score=50.33 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=56.5
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-----------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN----------------------- 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------- 75 (162)
...++|... ++.+.+..-. ..-..+.|.|.+|+|||++|+.+++.....
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~-----~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg 211 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLS-----RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFG 211 (469)
T ss_pred cccceecCHHHHHHHHHHHHHh-----ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcC
Confidence 356888876 3333332211 112346699999999999999987754311
Q ss_pred ----------------------EEEEEeCCCCCChhhHHHHHhhccccC-----------CCcEEEEecCC
Q 039127 76 ----------------------FNFALDDTWKEKYVDWTNMRDLFAAVA-----------SRSKVIVTTRN 113 (162)
Q Consensus 76 ----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTTR~ 113 (162)
=.++||++..........|...+..+. ...+||+||..
T Consensus 212 ~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 282 (469)
T PRK10923 212 HEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQ 282 (469)
T ss_pred CCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCC
Confidence 136889998777777888877765321 01278888864
No 286
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.77 E-value=0.0015 Score=54.57 Aligned_cols=113 Identities=14% Similarity=0.113 Sum_probs=70.4
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc------------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV------------------------ 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------------------------ 74 (162)
...++||++ .+...++.+. -+.+.|.+|+|||+||+.+......
T Consensus 19 ~~~i~gre~vI~lll~aalag~---------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~ 89 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQ 89 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC---------CEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHh
Confidence 467999999 3333344443 5669999999999999988752110
Q ss_pred ---------e---------EEEEEeCCCCCChhhHHHHHhhcccc--CCC-------cEEEEecCChhhH------hhhC
Q 039127 75 ---------N---------FNFALDDTWKEKYVDWTNMRDLFAAV--ASR-------SKVIVTTRNQGVA------SIMG 121 (162)
Q Consensus 75 ---------~---------~LlVlDdv~~~~~~~~~~l~~~l~~~--~~g-------s~iiiTTR~~~v~------~~~~ 121 (162)
+ -++++|+++..+......|...+... ..| .++++++.+.-.. ....
T Consensus 90 ~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D 169 (498)
T PRK13531 90 ALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD 169 (498)
T ss_pred hhhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh
Confidence 0 26899999988888888887776321 112 2455544453221 1111
Q ss_pred C-CCeeeCCCCCHH-HHHHHHhhC
Q 039127 122 T-MPAYELKKLVND-NCLLIFSQH 143 (162)
Q Consensus 122 ~-~~~~~l~~L~~~-~~~~lf~~~ 143 (162)
. .-.+.+++++.+ +-..++...
T Consensus 170 RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 170 RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred hEEEEEECCCCCchHHHHHHHHcc
Confidence 1 114789999854 447777654
No 287
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.76 E-value=0.019 Score=47.52 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=67.8
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------ 75 (162)
..++|... ++.+.+..-. .....+.|.|..|.||+++|+.++......
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a-----~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~ 208 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS-----RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGH 208 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh-----CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCC
Confidence 35788766 4444443322 112356799999999999999987543211
Q ss_pred ---------------------EEEEEeCCCCCChhhHHHHHhhccccC-----------CCcEEEEecCChhh-------
Q 039127 76 ---------------------FNFALDDTWKEKYVDWTNMRDLFAAVA-----------SRSKVIVTTRNQGV------- 116 (162)
Q Consensus 76 ---------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTTR~~~v------- 116 (162)
-.|+||++...+...+..|...+..+. ...+||.||....-
T Consensus 209 ~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 288 (463)
T TIGR01818 209 EKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGK 288 (463)
T ss_pred CCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCC
Confidence 237889998777777888877665321 13478888855321
Q ss_pred -----HhhhCCCCeeeCCCCC--HHHHHHHH
Q 039127 117 -----ASIMGTMPAYELKKLV--NDNCLLIF 140 (162)
Q Consensus 117 -----~~~~~~~~~~~l~~L~--~~~~~~lf 140 (162)
...+. ...+++.+|. .+|--.|.
T Consensus 289 f~~~L~~rl~-~~~i~lPpLr~R~~Di~~l~ 318 (463)
T TIGR01818 289 FREDLFHRLN-VIRIHLPPLRERREDIPRLA 318 (463)
T ss_pred cHHHHHHHhC-cceecCCCcccchhhHHHHH
Confidence 11111 1247788887 44544443
No 288
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.76 E-value=0.0012 Score=46.31 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=20.8
Q ss_pred EEEEcCCCcchHHHHHHHHccCCc
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
|.++|++|+||||+|+.+......
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 679999999999999999877643
No 289
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.76 E-value=0.0017 Score=47.20 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 467999999999999999998886554
No 290
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.75 E-value=0.0055 Score=53.07 Aligned_cols=74 Identities=9% Similarity=0.045 Sum_probs=50.5
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-----------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN----------------------- 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------- 75 (162)
.+.++|... ++++.+..-. .... -|.|+|..|+||+++|+.+++.....
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a----~~~~-pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg 398 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAA----KSSF-PVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG 398 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHh----CcCC-CEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcC
Confidence 457889887 3333333211 1123 35699999999999999998643211
Q ss_pred -------------------EEEEEeCCCCCChhhHHHHHhhccc
Q 039127 76 -------------------FNFALDDTWKEKYVDWTNMRDLFAA 100 (162)
Q Consensus 76 -------------------~LlVlDdv~~~~~~~~~~l~~~l~~ 100 (162)
=.|+||++.......+..|...+..
T Consensus 399 ~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~ 442 (638)
T PRK11388 399 SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKT 442 (638)
T ss_pred CCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhc
Confidence 1379999998888888888887753
No 291
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0087 Score=42.30 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=47.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce-----------------------------------------------EEEEEe
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN-----------------------------------------------FNFALD 81 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-----------------------------------------------~LlVlD 81 (162)
.+++|.|..|.|||||.+.+....... -++++|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 588999999999999999997643211 688889
Q ss_pred CCCC-CChhhHHHHHhhcccc-CCCcEEEEecCChhhHhhh
Q 039127 82 DTWK-EKYVDWTNMRDLFAAV-ASRSKVIVTTRNQGVASIM 120 (162)
Q Consensus 82 dv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTTR~~~v~~~~ 120 (162)
+... .+......+...+... ..+..++++|.+.......
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 7653 2344444444444321 2246688888877665543
No 292
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.001 Score=47.70 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=23.0
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
+|+|.|.+|+||||+|+.+..+..-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 68899999999999999998887644
No 293
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=96.75 E-value=0.0048 Score=45.30 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..-|.++|.+|+|||+|...+...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~ 29 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDG 29 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 345679999999999999998764
No 294
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0052 Score=47.25 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
..++|+|+.|.|||||.+.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999976
No 295
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.74 E-value=0.0014 Score=50.39 Aligned_cols=27 Identities=22% Similarity=-0.025 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
-..+.|.|.+|+|||||++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 457889999999999999999987654
No 296
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=96.74 E-value=0.0047 Score=46.33 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=19.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.--|.++|.+|+|||+|...+...
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~~ 36 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 345779999999999999987543
No 297
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.74 E-value=0.008 Score=47.00 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=64.4
Q ss_pred hHHHHHhccccccccCCCCCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------
Q 039127 4 KIKAVFDDADERQTVVPSVKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------ 75 (162)
Q Consensus 4 ~i~~~~~~~~~~~~~~~~~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------ 75 (162)
+|..-+.....+....+..+.|++-.. +++.++.... ..-+.+.++|+.|+|||+-++.+++.....
T Consensus 53 ~ia~~le~~~~q~~~~~~~~~~l~tkt~r~~~~~~~~A~-----k~g~l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~ 127 (297)
T COG2842 53 KIAAFLEKKGVQAALEKLAPDFLETKTVRRIFFRTRPAS-----KTGSLVVVYGYAGLGKTQAAKNYAPSNPNALLIEAD 127 (297)
T ss_pred HHHHHHcCCCcccccccccccccccchhHhHhhhhhhhh-----hcCceEEEeccccchhHHHHHhhcccCccceeecCC
Confidence 345555555555555567788988777 5555544322 223478899999999999999999877654
Q ss_pred ---------------------------------------EEEEEeCCCCCChhhHHHHHhhccccC
Q 039127 76 ---------------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVA 102 (162)
Q Consensus 76 ---------------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~ 102 (162)
-+++.|+..+.....++.++......+
T Consensus 128 p~~~a~~~i~~i~~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~G 193 (297)
T COG2842 128 PSYTALVLILIICAAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTG 193 (297)
T ss_pred hhhHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhC
Confidence 577788877667777777776655433
No 298
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.73 E-value=0.01 Score=46.65 Aligned_cols=102 Identities=13% Similarity=0.069 Sum_probs=66.0
Q ss_pred CCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------------------------EEEEEe
Q 039127 44 IDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------------------------FNFALD 81 (162)
Q Consensus 44 ~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------------------------~LlVlD 81 (162)
...+.-+++.+|-.|.||...++.+.+..... -|+|+|
T Consensus 106 ~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFD 185 (344)
T KOG2170|consen 106 NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFD 185 (344)
T ss_pred CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEec
Confidence 34567799999999999999998887655433 799999
Q ss_pred CCCCCChhhHHHHHhhccccCCCc------EEEE-ec--CChhhHh----hh---CCCCeeeCCCCCHHHHHHHHhhCCC
Q 039127 82 DTWKEKYVDWTNMRDLFAAVASRS------KVIV-TT--RNQGVAS----IM---GTMPAYELKKLVNDNCLLIFSQHPS 145 (162)
Q Consensus 82 dv~~~~~~~~~~l~~~l~~~~~gs------~iii-TT--R~~~v~~----~~---~~~~~~~l~~L~~~~~~~lf~~~af 145 (162)
+++.....-.+.|.+.+......+ .|.| -| ....++. .. ...+.++++.+++.-+...|...+.
T Consensus 186 E~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~ 265 (344)
T KOG2170|consen 186 EVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAG 265 (344)
T ss_pred hhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccc
Confidence 999888888888877765222211 2333 23 2233332 11 1223466777776667777766643
No 299
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.72 E-value=0.0075 Score=52.71 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=21.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+..-..
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999875543
No 300
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0074 Score=53.09 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=69.2
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-----------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN----------------------- 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------- 75 (162)
..-++||++ .+++.|.... .+-+ .++|.+|+|||.+|.-++.+.-..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~-----KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGa 241 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRT-----KNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGA 241 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccC-----CCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccc
Confidence 356899999 5666666544 1222 378999999999886665544322
Q ss_pred ----------------------EEEEEeCCCCC----C-----hhhHHHHHhhccccCCCcEEEEecCChhh------Hh
Q 039127 76 ----------------------FNFALDDTWKE----K-----YVDWTNMRDLFAAVASRSKVIVTTRNQGV------AS 118 (162)
Q Consensus 76 ----------------------~LlVlDdv~~~----~-----~~~~~~l~~~l~~~~~gs~iiiTTR~~~v------~~ 118 (162)
.+|.+|.++.. . .+.-.-|++.|.. +.--.|-.||-++.= +.
T Consensus 242 kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~EYRk~iEKD~A 320 (786)
T COG0542 242 KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLDEYRKYIEKDAA 320 (786)
T ss_pred cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHHHHHHHhhhchH
Confidence 88889988631 1 2222334444432 222346667754321 11
Q ss_pred hhCCCCeeeCCCCCHHHHHHHHhh
Q 039127 119 IMGTMPAYELKKLVNDNCLLIFSQ 142 (162)
Q Consensus 119 ~~~~~~~~~l~~L~~~~~~~lf~~ 142 (162)
....-+.+.+...+.+++..+++-
T Consensus 321 L~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 321 LERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HHhcCceeeCCCCCHHHHHHHHHH
Confidence 222345788999999999999964
No 301
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.70 E-value=0.012 Score=46.31 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=21.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|.|..|.|||||.+.+....
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999997653
No 302
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.70 E-value=0.0016 Score=48.27 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
..++.|.|.+|+||||+|+.+..+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~ 29 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAI 29 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 468899999999999999999887643
No 303
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.70 E-value=0.0018 Score=50.93 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=20.7
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHc
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
.+.+++++.|-||+||||+|..+..
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHH
Confidence 4679999999999999997765543
No 304
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.69 E-value=0.0015 Score=50.67 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=19.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
++++|+|-||+||||+|..+....
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 478888999999999886665443
No 305
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.69 E-value=0.0013 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=18.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
++|+|.|-||+||||++..+...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~ 23 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAA 23 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHH
Confidence 46889999999999977665443
No 306
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.69 E-value=0.0061 Score=43.06 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.6
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-+.++|.+|+|||+|...+.+..
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~ 26 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDT 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999987643
No 307
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.69 E-value=0.012 Score=46.25 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=21.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||.+.+..-.
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999997653
No 308
>PRK15115 response regulator GlrR; Provisional
Probab=96.69 E-value=0.012 Score=48.49 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=46.9
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce---------------------------------------------EEEEEeCCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------------------FNFALDDTW 84 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------------------~LlVlDdv~ 84 (162)
.+.|.|.+|+|||++|+.+++..... -.|+||+++
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~ 238 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccc
Confidence 45699999999999999987653311 247899998
Q ss_pred CCChhhHHHHHhhccccC---C--------CcEEEEecCCh
Q 039127 85 KEKYVDWTNMRDLFAAVA---S--------RSKVIVTTRNQ 114 (162)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~---~--------gs~iiiTTR~~ 114 (162)
..+...+..|...+..+. . ..++|.||...
T Consensus 239 ~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred cCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 777888888877765421 1 33788877653
No 309
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.032 Score=40.93 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=55.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------------EEEEEeCCCCCCh
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------------FNFALDDTWKEKY 88 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------------~LlVlDdv~~~~~ 88 (162)
-..++|.|+.|+||+||++.++.+.... |--+.+|.|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~~ 83 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTSR 83 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCcH
Confidence 3578899999999999999999887443 6677777775433
Q ss_pred hhHHHHHhhccccCCCcEEEEecCCh---hhHhhhCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 89 VDWTNMRDLFAAVASRSKVIVTTRNQ---GVASIMGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 89 ~~~~~l~~~l~~~~~gs~iiiTTR~~---~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
...+.. + ..|-.+|+-.--+ .+-..+.....+-+.|-+.++...-+..+
T Consensus 84 ~~ve~~---~---~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~R 135 (191)
T COG0194 84 EPVEQA---L---AEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGR 135 (191)
T ss_pred HHHHHH---H---hcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHcc
Confidence 332222 1 2244444433222 22223333335667788888777766654
No 310
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.68 E-value=0.0017 Score=45.54 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=25.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce---EEEEEeC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN---FNFALDD 82 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~---~LlVlDd 82 (162)
++|.|+|..|+|||||++.+.+....+ ...+.|.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 478999999999999999998776543 4444543
No 311
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=96.68 E-value=0.0064 Score=44.19 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=18.4
Q ss_pred EEEEcCCCcchHHHHHHHHcc
Q 039127 51 IPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~ 71 (162)
|+++|.+|+|||+|...+.+.
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~ 23 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHH 23 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999887754
No 312
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.68 E-value=0.0076 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|.|||||++.+..-..
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5789999999999999999975543
No 313
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.67 E-value=0.0079 Score=43.13 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=28.6
Q ss_pred EEEEEeCCCC---CChhhHHHHHhhccccCCCcEEEEecCChh
Q 039127 76 FNFALDDTWK---EKYVDWTNMRDLFAAVASRSKVIVTTRNQG 115 (162)
Q Consensus 76 ~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~ 115 (162)
=|+|||++.. ...-..+.+...+.....+..+|+|.|+..
T Consensus 97 dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 97 DLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred CEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 5999998752 133445566677776667778999999954
No 314
>PRK14527 adenylate kinase; Provisional
Probab=96.66 E-value=0.0017 Score=47.59 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++.++|.+|+||||+|+.+.....
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999886554
No 315
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.65 E-value=0.0014 Score=46.30 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
++.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999988765
No 316
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.63 E-value=0.0091 Score=44.14 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=19.5
Q ss_pred EEEEEEcCCCcchHHHHHHHH
Q 039127 49 FVIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~ 69 (162)
.+++|.|..|.|||||.+.+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 688999999999999999887
No 317
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.63 E-value=0.0016 Score=45.42 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.0
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
++|+|+.|+|||||++.+....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6899999999999999998764
No 318
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.63 E-value=0.0067 Score=43.21 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.2
Q ss_pred EEEEEcCCCcchHHHHHHHHc
Q 039127 50 VIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~ 70 (162)
-|.++|..|+|||+|...+.+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~ 22 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLT 22 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 367999999999999988864
No 319
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.63 E-value=0.0063 Score=51.62 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=56.5
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------ 75 (162)
.+++|... ++.+.+..-. ..-.-|.|.|..|+||+.+|+.+++.....
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A-----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~ 286 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA-----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGY 286 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh-----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCC
Confidence 45899887 3444332211 112356699999999999999998643211
Q ss_pred ----------------------EEEEEeCCCCCChhhHHHHHhhccccC---CC--------cEEEEecCC
Q 039127 76 ----------------------FNFALDDTWKEKYVDWTNMRDLFAAVA---SR--------SKVIVTTRN 113 (162)
Q Consensus 76 ----------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~---~g--------s~iiiTTR~ 113 (162)
=.|+||++...+......|...+.... .| .+||.+|..
T Consensus 287 ~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 287 EEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred cccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 148899998777888888887775421 11 277777754
No 320
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.62 E-value=0.011 Score=41.18 Aligned_cols=23 Identities=17% Similarity=0.560 Sum_probs=19.5
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.|+++|.+|+|||||...+.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36789999999999999887654
No 321
>PRK14532 adenylate kinase; Provisional
Probab=96.62 E-value=0.0017 Score=47.31 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEcCCCcchHHHHHHHHccCC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
|.+.|++|+||||+|+.+.....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999987765
No 322
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.62 E-value=0.0034 Score=49.34 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.6
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHH
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~ 69 (162)
....+|+|.|..|+||||+|+.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999999997663
No 323
>PRK04182 cytidylate kinase; Provisional
Probab=96.61 E-value=0.0019 Score=46.33 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=22.3
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
+|.|.|+.|+||||+|+.+......
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~ 26 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGL 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 6889999999999999999987653
No 324
>PRK13946 shikimate kinase; Provisional
Probab=96.61 E-value=0.0016 Score=47.58 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+.|.++|+.|+||||+++.+.+....
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 357889999999999999999987653
No 325
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.61 E-value=0.0017 Score=47.00 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..|.|+|+.|+||||+++.+.....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4688999999999999999987754
No 326
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.61 E-value=0.0015 Score=49.87 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=21.9
Q ss_pred EEcCCCcchHHHHHHHHccCCce----EEEEEeCC
Q 039127 53 IIGMGGSGNTTPALPVYNDKTVN----FNFALDDT 83 (162)
Q Consensus 53 I~G~gGiGKTtLa~~~~~~~~~~----~LlVlDdv 83 (162)
|+|++|+||||+++.+.+..... +++=||=.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 68999999999998887655443 77777743
No 327
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.61 E-value=0.0035 Score=44.10 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=20.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+.+.++|..|+|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 357799999999999999997655
No 328
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0036 Score=52.80 Aligned_cols=53 Identities=21% Similarity=0.094 Sum_probs=38.5
Q ss_pred CceeeehH------HHHHHhhcCCCC--CCCCCeEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 23 KLWLGREE------GTVELVLKDDSE--TIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 23 ~~~vGr~~------~i~~~l~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.++-|-++ +|++.|-++..- -++.=.+-|.++|++|.|||-||++++....+.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC
Confidence 46677777 788888765411 122224557799999999999999998887765
No 329
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.60 E-value=0.0078 Score=49.10 Aligned_cols=22 Identities=36% Similarity=0.332 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCcchHH-HHHHHH
Q 039127 48 FFVIPIIGMGGSGNTT-PALPVY 69 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTt-La~~~~ 69 (162)
-++++++|+.|+|||| ||+..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAa 225 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAA 225 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 6899999999999998 555443
No 330
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.0025 Score=46.44 Aligned_cols=35 Identities=29% Similarity=0.275 Sum_probs=27.6
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce--EEEEEe
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN--FNFALD 81 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~LlVlD 81 (162)
+..++=+.|++|+||||+|.+++...... -..+||
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 34677788999999999999998877655 455665
No 331
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.60 E-value=0.02 Score=41.32 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.-..|.+.|+.|+||||+...+....
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~ 38 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGE 38 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSS
T ss_pred cEEEEEEECCCccchHHHHHHhhhcc
Confidence 34566799999999999999998654
No 332
>PRK13948 shikimate kinase; Provisional
Probab=96.60 E-value=0.0021 Score=47.12 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
..+.|.++|+.|+||||+++.+.+.....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 45678899999999999999999876543
No 333
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.60 E-value=0.0027 Score=46.65 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...++.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35688999999999999999997764
No 334
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.59 E-value=0.0013 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.2
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
|.++|++|+||||+|+.+....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6799999999999999887654
No 335
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.59 E-value=0.0033 Score=43.75 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.++.+.|.-|+|||||++.+.....
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4899999999999999999987754
No 336
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.59 E-value=0.0093 Score=50.39 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
-..++|+|..|+|||||++.+..-..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35889999999999999999975543
No 337
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.59 E-value=0.015 Score=40.68 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.5
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
|+++|.+|+|||||.+.+.+..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999997654
No 338
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.58 E-value=0.0081 Score=44.81 Aligned_cols=52 Identities=17% Similarity=0.058 Sum_probs=37.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce-----------------------------------------------------
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN----------------------------------------------------- 75 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------------------------------------- 75 (162)
.-+.++|.+|+|||++|+.+..-...-
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGei 102 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEI 102 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CG
T ss_pred CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHH
Confidence 367799999999999999985322110
Q ss_pred -----EEEEEeCCCCCChhhHHHHHhhccc
Q 039127 76 -----FNFALDDTWKEKYVDWTNMRDLFAA 100 (162)
Q Consensus 76 -----~LlVlDdv~~~~~~~~~~l~~~l~~ 100 (162)
=.|.||++...+....+.|+.++..
T Consensus 103 slAh~GVLflDE~~ef~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 103 SLAHRGVLFLDELNEFDRSVLDALRQPLED 132 (206)
T ss_dssp GGGTTSEEEECETTTS-HHHHHHHHHHHHH
T ss_pred HHhcCCEEEechhhhcCHHHHHHHHHHHHC
Confidence 4788999988888889999988864
No 339
>PHA02624 large T antigen; Provisional
Probab=96.57 E-value=0.007 Score=51.88 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=37.4
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce---------------------EEEEEeCCC
Q 039127 31 GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------FNFALDDTW 84 (162)
Q Consensus 31 ~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------~LlVlDdv~ 84 (162)
.+++.++..- ++-+.+.++|+.|.|||||+..+.+-.... .+.+|||+-
T Consensus 419 ~~lk~~l~gi-----PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~pl~D~~~~l~dD~t 488 (647)
T PHA02624 419 DILKLIVENV-----PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELGCAIDQFMVVFEDVK 488 (647)
T ss_pred HHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhhhhhhceEEEeeecc
Confidence 3444555443 567899999999999999999998776322 789999984
No 340
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.57 E-value=0.002 Score=49.43 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=18.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
++|+|.|-||+||||++..+....
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~L 25 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAAL 25 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHH
Confidence 467788999999999887665443
No 341
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.56 E-value=0.014 Score=46.79 Aligned_cols=69 Identities=20% Similarity=0.116 Sum_probs=40.5
Q ss_pred EEEEEeCCCCCChhhHHHHH-hhc----cccCCCcEEEEecCChhhH-------hhhCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 76 FNFALDDTWKEKYVDWTNMR-DLF----AAVASRSKVIVTTRNQGVA-------SIMGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 76 ~LlVlDdv~~~~~~~~~~l~-~~l----~~~~~gs~iiiTTR~~~v~-------~~~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.++|+|.++-.-...-..+. ..| ....|-+-|-+|||..... +......++-++.+.-++...++++.
T Consensus 139 ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 139 VIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred EEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 78888877632111111111 111 2245667788999985432 33333446677788889999998876
Q ss_pred C
Q 039127 144 P 144 (162)
Q Consensus 144 a 144 (162)
.
T Consensus 219 l 219 (408)
T KOG2228|consen 219 L 219 (408)
T ss_pred h
Confidence 4
No 342
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.56 E-value=0.0021 Score=50.22 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.++.+.|.+|+||||+|+.+..+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 467889999999999999998776
No 343
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.56 E-value=0.0019 Score=47.07 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.7
Q ss_pred EEEEcCCCcchHHHHHHHHccCC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67999999999999999988764
No 344
>PRK05439 pantothenate kinase; Provisional
Probab=96.56 E-value=0.0041 Score=49.30 Aligned_cols=40 Identities=20% Similarity=0.066 Sum_probs=29.4
Q ss_pred CCCeEEEEEEcCCCcchHHHHHHHHccCCc-----e-EEEEEeCCC
Q 039127 45 DGGFFVIPIIGMGGSGNTTPALPVYNDKTV-----N-FNFALDDTW 84 (162)
Q Consensus 45 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-----~-~LlVlDdv~ 84 (162)
....-+|+|.|.+|+||||+|+.+...... . .++-+||..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 345789999999999999999888763321 1 466667764
No 345
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.56 E-value=0.012 Score=49.69 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
-..++|+|..|+|||||++.+..-..
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35889999999999999999976554
No 346
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.56 E-value=0.01 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-..++|+|..|+|||||++.+..-.
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3588999999999999999987655
No 347
>PF14516 AAA_35: AAA-like domain
Probab=96.55 E-value=0.028 Score=44.88 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=36.7
Q ss_pred cCCCCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 18 VVPSVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 18 ~~~~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++.+..+.|.. ++.+.|...+ ..+.|.|+-.+|||+|...+.+..+
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~G--------~~~~I~apRq~GKTSll~~l~~~l~ 56 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQPG--------SYIRIKAPRQMGKTSLLLRLLERLQ 56 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcCC--------CEEEEECcccCCHHHHHHHHHHHHH
Confidence 3456677789994 7777777644 4888999999999999988865554
No 348
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.0018 Score=46.83 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=18.6
Q ss_pred EEEEEcCCCcchHHHHHHHH
Q 039127 50 VIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~ 69 (162)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 57899999999999999987
No 349
>PLN02200 adenylate kinase family protein
Probab=96.55 E-value=0.0023 Score=48.68 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
...++.|.|++|+||||+|+.+......
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~ 69 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGF 69 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567899999999999999998876543
No 350
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.53 E-value=0.013 Score=50.35 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-..++|+|..|+|||||++.+....
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccCC
Confidence 3588999999999999999986544
No 351
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.52 E-value=0.011 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+.++|+|.+|+||||+.+.++.+.-
T Consensus 102 ~rygLiG~nG~Gkst~L~~i~~~e~ 126 (614)
T KOG0927|consen 102 RRYGLIGPNGSGKSTFLRAIAGREV 126 (614)
T ss_pred ceEEEEcCCCCcHhHHHHHHhcCCC
Confidence 5788999999999999999988764
No 352
>PRK07429 phosphoribulokinase; Provisional
Probab=96.52 E-value=0.0048 Score=49.27 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=31.1
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCce--EEEEEeCCC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTVN--FNFALDDTW 84 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~LlVlDdv~ 84 (162)
...-+|+|.|..|+|||||++.+....... .++.+||..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 456799999999999999999999775432 466778874
No 353
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.51 E-value=0.019 Score=39.42 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
|.++|.+|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 6799999999999999987654
No 354
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.50 E-value=0.0022 Score=46.63 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.7
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998765
No 355
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.49 E-value=0.01 Score=48.84 Aligned_cols=24 Identities=33% Similarity=0.232 Sum_probs=20.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..+.++|++|+|||+||+.+....
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 468899999999999999997554
No 356
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.49 E-value=0.012 Score=41.33 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=19.4
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.|+|+|.+|+|||||+..+.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~ 24 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 36799999999999999887543
No 357
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.49 E-value=0.011 Score=44.27 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHH
Q 039127 48 FFVIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~ 69 (162)
.+++.|+|..|.|||||.+.+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3788899999999999988875
No 358
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.49 E-value=0.003 Score=49.19 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=27.7
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce--EEEEEeCCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN--FNFALDDTW 84 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~--~LlVlDdv~ 84 (162)
+++|.|..|+|||||++.+....... ..+..||+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 47899999999999999998765432 466678775
No 359
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.014 Score=44.10 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|.|||||.+.++....
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4889999999999999999976643
No 360
>PRK08356 hypothetical protein; Provisional
Probab=96.48 E-value=0.0031 Score=46.41 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHH
Q 039127 48 FFVIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~ 69 (162)
..++.|+|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999984
No 361
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.48 E-value=0.018 Score=40.06 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
++++|.+|+|||||...+.+..
T Consensus 3 i~i~G~~~~GKStli~~l~~~~ 24 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENK 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999998887654
No 362
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.47 E-value=0.043 Score=45.22 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=40.9
Q ss_pred EEEEEeCCCCCC---hhhHHHHH---hhccccCCCcEEEEecCChhhHhh----hC--CCCeeeCCCCCHHHHHHHHhhC
Q 039127 76 FNFALDDTWKEK---YVDWTNMR---DLFAAVASRSKVIVTTRNQGVASI----MG--TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 76 ~LlVlDdv~~~~---~~~~~~l~---~~l~~~~~gs~iiiTTR~~~v~~~----~~--~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
-++|+||+.... ..-|+.|. ..+- ..+=.+||+.|-+...... +. ..+.+.|...+.+.|..+..++
T Consensus 150 PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 150 PVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 589999986431 22223322 1122 2334478888876544432 21 1236789999999999999877
Q ss_pred C
Q 039127 144 P 144 (162)
Q Consensus 144 a 144 (162)
.
T Consensus 229 L 229 (431)
T PF10443_consen 229 L 229 (431)
T ss_pred h
Confidence 5
No 363
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.47 E-value=0.012 Score=51.46 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=21.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+..-..
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999965543
No 364
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.47 E-value=0.013 Score=45.25 Aligned_cols=27 Identities=22% Similarity=0.087 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
-.+++|+|+.|+|||||.+.++.-.+.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 358999999999999999999886553
No 365
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.47 E-value=0.0019 Score=46.00 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=17.8
Q ss_pred EEEEcCCCcchHHHHHHHHcc
Q 039127 51 IPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~ 71 (162)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 366
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.46 E-value=0.0026 Score=45.29 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.6
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+|.|.|..|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999987654
No 367
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.46 E-value=0.014 Score=50.97 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=21.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+.....
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g~~~ 508 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQRLYT 508 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999976654
No 368
>PRK14531 adenylate kinase; Provisional
Probab=96.46 E-value=0.0024 Score=46.50 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.5
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.|.++|++|+||||+++.+......
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~ 28 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGL 28 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999777643
No 369
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.46 E-value=0.015 Score=49.68 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-..++|+|..|+|||||++.+....
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3578999999999999999987544
No 370
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0029 Score=54.93 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=22.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.-|.|.|..|+|||+||+.+++.....
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~ 458 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKD 458 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccc
Confidence 467799999999999999998876643
No 371
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.45 E-value=0.0023 Score=45.90 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.8
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+.|+|+.|+||||+|+.+......
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5778999999999999999987653
No 372
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.45 E-value=0.019 Score=39.79 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=18.7
Q ss_pred EEEEcCCCcchHHHHHHHHcc
Q 039127 51 IPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~ 71 (162)
|.|+|.+|+|||+|...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999998754
No 373
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.45 E-value=0.013 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+..-..
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 4789999999999999999976554
No 374
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.44 E-value=0.022 Score=44.95 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|.|..|.|||||.+.+..-..
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999976543
No 375
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.44 E-value=0.011 Score=41.47 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=18.9
Q ss_pred EEEEcCCCcchHHHHHHHHcc
Q 039127 51 IPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~ 71 (162)
|+++|.+|+|||+|...+.+.
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998764
No 376
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.44 E-value=0.0079 Score=44.13 Aligned_cols=23 Identities=13% Similarity=0.411 Sum_probs=19.0
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.|+++|.+|+|||||+..+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~ 24 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE 24 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC
Confidence 47789999999999998887654
No 377
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.43 E-value=0.0028 Score=48.85 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=16.9
Q ss_pred EEEEEcCCCcchHHHHHHHHc
Q 039127 50 VIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~ 70 (162)
+|++.|-||+||||+|..+..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 577889999999997766543
No 378
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.43 E-value=0.012 Score=42.54 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.1
Q ss_pred EEEEEcCCCcchHHHHHHHHcc
Q 039127 50 VIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-|+++|.+|+|||+|...+...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~ 24 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKD 24 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3679999999999999988755
No 379
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.43 E-value=0.0029 Score=46.98 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..+++++++|..|+|||||..++.+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999888765
No 380
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.43 E-value=0.025 Score=43.17 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=28.1
Q ss_pred eeehH-----HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 26 LGREE-----GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 26 vGr~~-----~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+||+. .++..|.... ..-..|.|.+|+|||||.+.++.-.
T Consensus 117 v~r~v~Gt~~~li~~ly~~g-------~lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 117 VARQVFGTANPLIKDLYQNG-------WLNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred ehhhhhccchHHHHHHHhcC-------ceeeEEecCCCCChHHHHHHHHHHh
Confidence 55655 3566666554 4446789999999999988776543
No 381
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.43 E-value=0.018 Score=39.61 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.2
Q ss_pred EEEEcCCCcchHHHHHHHHcc
Q 039127 51 IPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~ 71 (162)
|+|+|..|+|||+|.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 679999999999999999876
No 382
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.42 E-value=0.01 Score=50.52 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=50.2
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHcc---------CCce---------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYND---------KTVN--------------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~---------~~~~--------------- 75 (162)
.+++|... ++.+.+..-. ..-.-|.|.|..|.||+.+|+.+++. .+..
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A-----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~l 293 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA-----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL 293 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh-----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhh
Confidence 45899887 3444332211 11235669999999999999999876 2111
Q ss_pred ------------------------------EEEEEeCCCCCChhhHHHHHhhccc
Q 039127 76 ------------------------------FNFALDDTWKEKYVDWTNMRDLFAA 100 (162)
Q Consensus 76 ------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~ 100 (162)
=.|+||++.......+..|...+..
T Consensus 294 leseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e 348 (538)
T PRK15424 294 LEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEE 348 (538)
T ss_pred HHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhc
Confidence 1588999987778888888877754
No 383
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.42 E-value=0.029 Score=39.49 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.-++++|.+|+|||||+..+...
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45779999999999999888643
No 384
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.41 E-value=0.0034 Score=44.49 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=27.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCceEEEEEeCCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVNFNFALDDTW 84 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~LlVlDdv~ 84 (162)
.-+.|.|.+|+||||+|..+..+- +.+|=||.+
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~~g---~~lvaDD~v 47 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIKRG---HRLVADDRV 47 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC---CeEEECCEE
Confidence 456799999999999998888776 677888865
No 385
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.41 E-value=0.011 Score=52.23 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=41.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc-----e----------------------------------------EEEEEeCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV-----N----------------------------------------FNFALDDT 83 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~-----~----------------------------------------~LlVlDdv 83 (162)
++..|.|.+|.||||+++.+...... . -++|+|++
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 37789999999999999887533211 1 58999998
Q ss_pred CCCChhhHHHHHhhccccCCCcEEEEec
Q 039127 84 WKEKYVDWTNMRDLFAAVASRSKVIVTT 111 (162)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~gs~iiiTT 111 (162)
...+...+..|..... ..|+++|+--
T Consensus 449 sMv~~~~~~~Ll~~~~--~~~~kliLVG 474 (744)
T TIGR02768 449 GMVGSRQMARVLKEAE--EAGAKVVLVG 474 (744)
T ss_pred ccCCHHHHHHHHHHHH--hcCCEEEEEC
Confidence 7666666655544322 3467777655
No 386
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.41 E-value=0.013 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+.....
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 4789999999999999999865543
No 387
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.40 E-value=0.0025 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=18.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
++|+|.|-||+||||+|..+....
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~L 25 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAAL 25 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 467788999999999887765443
No 388
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=96.40 E-value=0.023 Score=40.34 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=18.6
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
|.|+|.+|+|||+|...+....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~ 22 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA 22 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC
Confidence 4689999999999998876644
No 389
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.003 Score=48.10 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||++.+..-.+
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccC
Confidence 4889999999999999999865443
No 390
>PLN02796 D-glycerate 3-kinase
Probab=96.39 E-value=0.0053 Score=49.28 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=30.3
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce----EEEEEeCCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN----FNFALDDTW 84 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~LlVlDdv~ 84 (162)
..-+++|.|..|+|||||++.+....... ..+-+||..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 45789999999999999999998766432 556678875
No 391
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.39 E-value=0.0031 Score=45.83 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.++.|+|..|+|||||++.+......
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47899999999999999999886653
No 392
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.38 E-value=0.005 Score=52.71 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=33.3
Q ss_pred CceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 23 KLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 23 ~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
+.++-|.+ +++..+.... ...-.+|.++|+.|+||||+|+.++.....
T Consensus 369 P~~f~rpeV~~iL~~~~~~r----~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPR----HKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccc----cCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 44555666 4555554443 233447889999999999999999887653
No 393
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.38 E-value=0.0032 Score=44.57 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=19.7
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-|+++|.+|+|||||++.+.+..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~ 24 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK 24 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999887653
No 394
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.38 E-value=0.025 Score=45.38 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|.|||||.+.+....
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 588999999999999999997654
No 395
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.38 E-value=0.0026 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.2
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.|.|.|++|+||||+|+.+.....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987764
No 396
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.38 E-value=0.0043 Score=43.07 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|++.|..|+|||||+..+....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~ 27 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQK 27 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCc
Confidence 4578999999999999999987653
No 397
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.37 E-value=0.0037 Score=41.82 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=25.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCceEEEEEeCCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVNFNFALDDTW 84 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~LlVlDdv~ 84 (162)
..++|.|..|+|||||+..+. .-.+.+.=||+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~---~G~i~~~g~di~ 48 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI---KRKHRLVGDDNV 48 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh---CCeEEEeeEeHH
Confidence 578999999999999999987 222555555554
No 398
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.36 E-value=0.0056 Score=43.48 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...++|+|.+|+|||||...+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456889999999999999999876
No 399
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.35 E-value=0.028 Score=39.59 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHH
Q 039127 48 FFVIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~ 69 (162)
...++++|.+|+|||||...+.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~ 28 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFT 28 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999999886
No 400
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.35 E-value=0.0032 Score=46.00 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
..|+|.|..|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999876543
No 401
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.35 E-value=0.0036 Score=42.85 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.0
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.|+++|.+|+|||||+..+.....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~~ 26 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNKF 26 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987763
No 402
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.35 E-value=0.026 Score=40.28 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+.--+.++|.+|+|||+|...+.....
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f 29 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSF 29 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 455678999999999999999876543
No 403
>PTZ00369 Ras-like protein; Provisional
Probab=96.34 E-value=0.017 Score=41.94 Aligned_cols=23 Identities=17% Similarity=0.495 Sum_probs=19.2
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-|+|+|.+|+|||||+..+.+..
T Consensus 7 Ki~iiG~~~~GKTsLi~~~~~~~ 29 (189)
T PTZ00369 7 KLVVVGGGGVGKSALTIQFIQNH 29 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999998887654
No 404
>PRK06761 hypothetical protein; Provisional
Probab=96.34 E-value=0.0033 Score=49.13 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=23.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
+++.|.|++|+||||+++.++......
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 578999999999999999999887643
No 405
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.34 E-value=0.018 Score=49.23 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
-..++|+|..|.|||||++.+.....
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35889999999999999999976554
No 406
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.33 E-value=0.0031 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEcCCCcchHHHHHHHHccCC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999987654
No 407
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.0037 Score=45.13 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.++++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999987766554
No 408
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.33 E-value=0.019 Score=46.17 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.+..-.+
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl~~ 56 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLLER 56 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999966543
No 409
>PLN02348 phosphoribulokinase
Probab=96.32 E-value=0.0053 Score=50.06 Aligned_cols=39 Identities=23% Similarity=0.167 Sum_probs=31.5
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCc-------------------eEEEEEeCCC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTV-------------------NFNFALDDTW 84 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~-------------------~~LlVlDdv~ 84 (162)
....+|+|.|.+|+||||||+.+.+.... -.++-+||..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 45789999999999999999999875431 1678889875
No 410
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.32 E-value=0.0037 Score=42.93 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|+|..|+|||||.+.+......
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CEEEEEccCCCccccceeeecccccc
Confidence 47899999999999999999877654
No 411
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.32 E-value=0.0095 Score=44.49 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.|.++|..|+|||+++..+.....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~ 25 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEV 25 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 467899999999999999875543
No 412
>PRK02496 adk adenylate kinase; Provisional
Probab=96.32 E-value=0.0037 Score=45.42 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+.|.|.+|+||||+|+.+.....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477999999999999999876553
No 413
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=96.32 E-value=0.02 Score=41.65 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=19.3
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-|.++|-+|+|||+|...+....
T Consensus 7 KivvvGd~~vGKTsli~~~~~~~ 29 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDC 29 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 46799999999999999886543
No 414
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=96.31 E-value=0.017 Score=40.63 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=18.6
Q ss_pred EEEEEcCCCcchHHHHHHHHcc
Q 039127 50 VIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.|+++|.+|+|||+|+..+.+.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~ 24 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4679999999999999887654
No 415
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.31 E-value=0.022 Score=42.24 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.4
Q ss_pred EEEEcCCCcchHHHHHHHHcc
Q 039127 51 IPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~ 71 (162)
|.++|.+|+|||+|++.+.+.
T Consensus 3 vvvlG~~gVGKTSli~r~~~~ 23 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDD 23 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 569999999999999888754
No 416
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.31 E-value=0.0033 Score=45.46 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=18.7
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+.|.|.+|+|||||++.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 5799999999999999988766
No 417
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=96.31 E-value=0.0074 Score=46.40 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
++|+|.|-||+||||+|..+....
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~L 26 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAY 26 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 578888999999999998876644
No 418
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.30 E-value=0.0032 Score=47.03 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.8
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477999999999999999887664
No 419
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=96.30 E-value=0.0032 Score=48.76 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=18.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
++|+|.|-||+||||+|..+...
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~ 24 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAG 24 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHH
Confidence 47888899999999988766543
No 420
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.29 E-value=0.0032 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=18.2
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+|++.|-||+||||+|..+....
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~l 24 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVAL 24 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 67888999999999876655443
No 421
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.28 E-value=0.028 Score=40.16 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=19.6
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.|+|+|.+|+|||||+..+....
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~ 25 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGH 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57799999999999999887543
No 422
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.27 E-value=0.0034 Score=51.44 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
..+.|+|+|..|+|||||++.+......
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~ 245 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNT 245 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999877543
No 423
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.26 E-value=0.0042 Score=45.59 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
+.|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998764
No 424
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.26 E-value=0.0069 Score=48.46 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=27.6
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCc---e-EEEEEeCC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTV---N-FNFALDDT 83 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~---~-~LlVlDdv 83 (162)
.+..+|+|.|.+|+|||||+..+....+. + .++-+|.-
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 95 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 35789999999999999999876544332 2 55666653
No 425
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.26 E-value=0.02 Score=40.00 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=18.7
Q ss_pred EEEEEcCCCcchHHHHHHHHcc
Q 039127 50 VIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-|+|+|.+|+|||||+..+...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4679999999999999887754
No 426
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.25 E-value=0.0036 Score=39.71 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
++.+.|.+|+||||++..+.....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~ 24 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALA 24 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 367889999999999988776643
No 427
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.25 E-value=0.03 Score=39.16 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-+.++|.+|+|||+|+..+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36799999999999999888764
No 428
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.25 E-value=0.0078 Score=49.74 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=30.4
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCc---eEEEEEeCCCCCChhhHHHHH
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTV---NFNFALDDTWKEKYVDWTNMR 95 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~---~~LlVlDdv~~~~~~~~~~l~ 95 (162)
...++.++|..|+||||++..++...+. +.++|==|.. ....|+.+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~--R~aA~eQLk 148 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF--RAGAFDQLK 148 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc--chhHHHHHH
Confidence 4679999999999999988777643322 2444432333 445565553
No 429
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.24 E-value=0.02 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+..-..
T Consensus 506 e~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 506 QRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999976543
No 430
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.24 E-value=0.0048 Score=41.20 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEcCCCcchHHHHHHHHcc
Q 039127 51 IPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~ 71 (162)
|+|.|..|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 679999999999999999975
No 431
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.23 E-value=0.0045 Score=47.69 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=18.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
++|+|.|-||+||||++..+...
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~ 25 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAA 25 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57888899999999977665443
No 432
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.22 E-value=0.0054 Score=50.23 Aligned_cols=35 Identities=17% Similarity=0.045 Sum_probs=27.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce------EEEEEeC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN------FNFALDD 82 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~------~LlVlDd 82 (162)
-..++|+|.+|+|||||++.+++....+ |+++.|+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE 208 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE 208 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC
Confidence 3568899999999999999999874432 5556655
No 433
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.22 E-value=0.0037 Score=45.33 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=22.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
+-|.++||.|+||||+.+.+.+.....
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLP 29 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCC
Confidence 357899999999999999998877544
No 434
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.22 E-value=0.018 Score=48.64 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=27.5
Q ss_pred CceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHc
Q 039127 23 KLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 23 ~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
.+++|.+. +-++..... -..+.++|.+|.|||+||+.+..
T Consensus 192 ~dv~Gq~~~~~al~~aa~~--------g~~vlliG~pGsGKTtlar~l~~ 233 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAAG--------GHNLLLFGPPGSGKTMLASRLQG 233 (499)
T ss_pred HHhcCcHHHHhhhhhhccC--------CCEEEEEecCCCCHHHHHHHHhc
Confidence 45667666 333333322 24788999999999999998863
No 435
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.21 E-value=0.0034 Score=43.79 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=18.8
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+.|+|.+|+|||+++..+....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 5799999999999998886554
No 436
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.21 E-value=0.034 Score=39.27 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-++++|.+|+|||||...+.+..
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~ 25 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDS 25 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999987654
No 437
>PRK01184 hypothetical protein; Provisional
Probab=96.21 E-value=0.0043 Score=45.03 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=18.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+|.|+|++|+||||+|+ +....
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc
Confidence 478999999999999997 44443
No 438
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.21 E-value=0.021 Score=49.83 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+..-..
T Consensus 480 e~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999999999999999976554
No 439
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.21 E-value=0.0037 Score=44.59 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.4
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
++.|+|..|+|||||+..+....+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999988887643
No 440
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.20 E-value=0.0057 Score=49.09 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=32.0
Q ss_pred EEEEcCCCcchHHHHHHHHccCCc-e----EEEEEeCCCC----------CChhhHHHHHhh
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTV-N----FNFALDDTWK----------EKYVDWTNMRDL 97 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~-~----~LlVlDdv~~----------~~~~~~~~l~~~ 97 (162)
+++.|++|+||||+++.+.+.... . .++=.||+-. .....|..++..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~ 63 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQE 63 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHH
Confidence 578999999999999998866542 1 5566677541 135667665543
No 441
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.0084 Score=49.17 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..++++++|.+|+||||++..++...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 34789999999999999998886543
No 442
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.19 E-value=0.0042 Score=45.16 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.+.+.|+|+.|+|||||++.+......+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~ 29 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK 29 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc
Confidence 3678899999999999999998776543
No 443
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.18 E-value=0.0051 Score=48.07 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...++.++|.+|+||||++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999998776543
No 444
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.18 E-value=0.025 Score=46.62 Aligned_cols=87 Identities=9% Similarity=0.077 Sum_probs=55.8
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------ 75 (162)
..++|... .+...+..-. ..... +.|+|..|+||+++|+.++......
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a----~~~~~-vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~ 213 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIA----PSDIT-VLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGY 213 (445)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCC-EEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCC
Confidence 45788776 3333332211 11233 4599999999999999987543211
Q ss_pred ---------------------EEEEEeCCCCCChhhHHHHHhhccccC-----------CCcEEEEecCCh
Q 039127 76 ---------------------FNFALDDTWKEKYVDWTNMRDLFAAVA-----------SRSKVIVTTRNQ 114 (162)
Q Consensus 76 ---------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTTR~~ 114 (162)
=.|+||++.......+..|...+.... ...++|.||...
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 214 EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred CCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCC
Confidence 247899998777888888877765321 134788888654
No 445
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.18 E-value=0.0028 Score=45.46 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=21.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
-.|.|.|+.++||||+.+.+......
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~~ 42 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDTD 42 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCcc
Confidence 45669999999999999998766543
No 446
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=96.17 E-value=0.023 Score=40.92 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.5
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-++++|-+|+|||+|...+.+..
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~ 25 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNK 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 46799999999999999887544
No 447
>PRK14528 adenylate kinase; Provisional
Probab=96.17 E-value=0.0045 Score=45.32 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+.+.|.|.+|+||||+|+.+.....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999876654
No 448
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.15 E-value=0.0048 Score=46.38 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=22.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.+++|+|+.|+|||||.+.+-.-....
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~ 55 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPD 55 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCC
Confidence 489999999999999999987655544
No 449
>PRK13768 GTPase; Provisional
Probab=96.15 E-value=0.0052 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.++.+.|.||+||||++..+....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH
Confidence 478899999999999887765443
No 450
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.15 E-value=0.004 Score=45.24 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEEEcCCCcchHHHHHHHHc
Q 039127 50 VIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~ 70 (162)
+|+|.|..|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977
No 451
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.15 E-value=0.0061 Score=45.98 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
...+.|+|.+|+||||+|+.+..
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 34588999999999999998753
No 452
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.15 E-value=0.018 Score=42.35 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=14.3
Q ss_pred EEEEEcCCCcchHHHHHHH
Q 039127 50 VIPIIGMGGSGNTTPALPV 68 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~ 68 (162)
+..++|.+|.|||..|...
T Consensus 2 I~~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEEEE--TTSSHHHHHHHH
T ss_pred EEEEEcCCCCcHhHHHHHH
Confidence 5678999999999988665
No 453
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.15 E-value=0.024 Score=42.19 Aligned_cols=73 Identities=18% Similarity=0.116 Sum_probs=47.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC--------------ce--------------------------------------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT--------------VN-------------------------------------- 75 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~--------------~~-------------------------------------- 75 (162)
..++.|.|..|.||||+.+.+....- ..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~ 108 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADG 108 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCC
Confidence 36899999999999999877631110 00
Q ss_pred -EEEEEeCCCCC-Chhh----HHHHHhhccccCCCcEEEEecCChhhHhhhCC
Q 039127 76 -FNFALDDTWKE-KYVD----WTNMRDLFAAVASRSKVIVTTRNQGVASIMGT 122 (162)
Q Consensus 76 -~LlVlDdv~~~-~~~~----~~~l~~~l~~~~~gs~iiiTTR~~~v~~~~~~ 122 (162)
-|+++|..... +... ...+...+. ..|+.+|++|....++..+..
T Consensus 109 ~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 109 DSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhhc
Confidence 79999997431 2322 122333333 237889999999888876543
No 454
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=96.14 E-value=0.032 Score=39.95 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=18.4
Q ss_pred EEEEEcCCCcchHHHHHHHHcc
Q 039127 50 VIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-+.++|.+|+|||+|+..+...
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~ 25 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISH 25 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 3679999999999999877643
No 455
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.14 E-value=0.036 Score=39.14 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=18.9
Q ss_pred EEEEEcCCCcchHHHHHHHHcc
Q 039127 50 VIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-++++|.+|+|||+|...+.+.
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~ 25 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEK 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999988755
No 456
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.14 E-value=0.024 Score=48.40 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|.|||||++.+.....
T Consensus 367 e~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 4789999999999999999875543
No 457
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.13 E-value=0.0064 Score=47.31 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...+++.++|.+|+||||++..++...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 446899999999999999887775443
No 458
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.017 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.247 Sum_probs=20.2
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
.-.+++++|..|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999986654
No 459
>PRK15453 phosphoribulokinase; Provisional
Probab=96.13 E-value=0.0056 Score=47.86 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC---ce-EEEEEeCCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT---VN-FNFALDDTW 84 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~---~~-~LlVlDdv~ 84 (162)
...+|+|.|.+|+||||+|+.+.+... .. .++-.|+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 457899999999999999998865432 22 455566655
No 460
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.12 E-value=0.0052 Score=45.53 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=22.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||++.++....
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999987654
No 461
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.12 E-value=0.029 Score=39.20 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=18.7
Q ss_pred EEEEEcCCCcchHHHHHHHHcc
Q 039127 50 VIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-++++|.+|+|||||+..+.+.
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4679999999999999887644
No 462
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.12 E-value=0.0052 Score=45.78 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=22.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|+|..|+|||||++.++.-...
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 48899999999999999999876543
No 463
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.12 E-value=0.0087 Score=46.15 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=27.2
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 31 GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 31 ~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+++..+.... .+..+|+|.|.+|+||+||...+....
T Consensus 17 ~ll~~l~~~~-----g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 17 ELLKRLYPHT-----GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHGGGT-----T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhhc-----CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 6777776543 457899999999999999997765444
No 464
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.11 E-value=0.028 Score=45.33 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.+..-..
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCC
Confidence 4889999999999999999976543
No 465
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.11 E-value=0.0037 Score=43.98 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.6
Q ss_pred EEcCCCcchHHHHHHHHccCCc
Q 039127 53 IIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 53 I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
|.|++|+||||+|+.++.+...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~ 22 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL 22 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS
T ss_pred CcCCCCCChHHHHHHHHHhcCc
Confidence 6899999999999999988753
No 466
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.11 E-value=0.0054 Score=41.59 Aligned_cols=31 Identities=35% Similarity=0.369 Sum_probs=22.6
Q ss_pred EEEEcCCCcchHHHHHHHHccCCce--EEEEEe
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTVN--FNFALD 81 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~~--~LlVlD 81 (162)
+.+.|.||+|||+++..+......+ -.+++|
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6789999999999998876654322 344555
No 467
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.10 E-value=0.0064 Score=44.18 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..++.+.|.+|+||||+|+.+....
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988764
No 468
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.09 E-value=0.037 Score=45.72 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=46.0
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce---------------------------------------------EEEEEeCCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------------------FNFALDDTW 84 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------------------~LlVlDdv~ 84 (162)
-+.|.|..|+||+++|+.+++..... =.|+||++.
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~ 247 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIG 247 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechh
Confidence 46689999999999999987543211 168999999
Q ss_pred CCChhhHHHHHhhccccC-----------CCcEEEEecCC
Q 039127 85 KEKYVDWTNMRDLFAAVA-----------SRSKVIVTTRN 113 (162)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~-----------~gs~iiiTTR~ 113 (162)
..+......|...+.... ...+||.||..
T Consensus 248 ~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~ 287 (457)
T PRK11361 248 EMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNR 287 (457)
T ss_pred hCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCC
Confidence 777777778777665321 12478888854
No 469
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.08 E-value=0.012 Score=43.72 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=25.8
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc--eEEEEEeCCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV--NFNFALDDTW 84 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~--~~LlVlDdv~ 84 (162)
.++|.|..|+|||||.+.+.+.... ...++..|..
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~ 39 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIY 39 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcC
Confidence 6789999999999999988876332 2444555554
No 470
>PLN02165 adenylate isopentenyltransferase
Probab=96.08 E-value=0.0052 Score=49.08 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
-.+++|+|+.|+|||+||..++....
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 45899999999999999999887753
No 471
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.08 E-value=0.0055 Score=45.59 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||++.+..-..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4889999999999999999987654
No 472
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.08 E-value=0.0059 Score=45.45 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
..+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998877
No 473
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.08 E-value=0.039 Score=39.04 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
--|+++|.+|+|||+|+..+.+..
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~ 27 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDS 27 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCc
Confidence 457799999999999999987653
No 474
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.07 E-value=0.011 Score=48.87 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=29.1
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce----EEEEEeCCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN----FNFALDDTW 84 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----~LlVlDdv~ 84 (162)
..-+|+|.|..|+|||||++.+..-.+.. ..|-+||..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 46789999999999999999986544221 456788875
No 475
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.07 E-value=0.046 Score=43.24 Aligned_cols=25 Identities=32% Similarity=0.244 Sum_probs=21.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..+.|.|..|+|||||++.+.....
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCC
Confidence 5788999999999999998876543
No 476
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.07 E-value=0.0075 Score=47.72 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCceE
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVNF 76 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~ 76 (162)
.-..|.++|+.|+||||+++.+.......|
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~ 161 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPF 161 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 345788999999999999999988766443
No 477
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.06 E-value=0.029 Score=49.31 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
-..++|+|..|.|||||++.+..-..
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 35889999999999999999876554
No 478
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.06 E-value=0.0039 Score=48.57 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
++++|+|.+|+|||||+..+....+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~ 27 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSG 27 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999888765543
No 479
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.05 E-value=0.0069 Score=44.21 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|.|..|+|||||.+.+......
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48899999999999999999876543
No 480
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=96.05 E-value=0.0056 Score=42.12 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.0
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-|+++|.+|+|||+|...+....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 36899999999999999987664
No 481
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.05 E-value=0.0064 Score=44.32 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+.+.|+|+.|+||+||+..+.....
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~ 27 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIP 27 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCC
Confidence 5788999999999999999988753
No 482
>PF13245 AAA_19: Part of AAA domain
Probab=96.04 E-value=0.0068 Score=37.95 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.3
Q ss_pred EEEEEEcCCCcchHHHHHH
Q 039127 49 FVIPIIGMGGSGNTTPALP 67 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~ 67 (162)
+++.|.|.+|.|||+++..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4677899999999966643
No 483
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.03 E-value=0.032 Score=47.42 Aligned_cols=26 Identities=31% Similarity=0.229 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
-..++|+|..|+|||||++.+.....
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35889999999999999999976543
No 484
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.03 E-value=0.0045 Score=45.22 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.1
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+|+|.|+.|+||||+++.+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 485
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.0069 Score=45.04 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||++.+.....
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999999987654
No 486
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.01 E-value=0.0069 Score=43.39 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+++.|+|..|+|||||+..+.....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999998887654
No 487
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.01 E-value=0.0055 Score=48.47 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=17.4
Q ss_pred EEEEEEcCCCcchHHHHHHHH
Q 039127 49 FVIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~ 69 (162)
+++.+.|-||+||||+|-...
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A 22 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALA 22 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHH
Confidence 578899999999999985543
No 488
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.01 E-value=0.0063 Score=49.01 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=29.7
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHH
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~ 69 (162)
-+.++|.++ .++..+.+ +...-+.|.|..|.||||+|+.++
T Consensus 16 f~~ivGq~~~k~al~~~~~~-------p~~~~vli~G~~GtGKs~~ar~~~ 59 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVID-------PKIGGVMIMGDRGTGKSTTIRALV 59 (350)
T ss_pred HHHHhChHHHHHHHHHhccC-------CCCCeEEEEcCCCCCHHHHHHHHH
Confidence 368999999 33332233 235567799999999999999884
No 489
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.01 E-value=0.0065 Score=43.98 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...++|+|.+|+|||||...+...
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345689999999999999998864
No 490
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=96.01 E-value=0.0064 Score=42.53 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
|+++|.+|+|||+|...+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6799999999999999997764
No 491
>PRK12338 hypothetical protein; Provisional
Probab=96.01 E-value=0.0074 Score=47.97 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
..++.|.|.+|+||||+|+.+..+....
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~ 31 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIK 31 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCe
Confidence 4688999999999999999999887644
No 492
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.00 E-value=0.021 Score=40.49 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.7
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+.++|.+|+|||||...+.+..
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~~ 24 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDA 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999998876543
No 493
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.00 E-value=0.0078 Score=47.90 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...++.++|++|+||||++..++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999988765543
No 494
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.00 E-value=0.05 Score=38.11 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=17.9
Q ss_pred EEEEcCCCcchHHHHHHHHc
Q 039127 51 IPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~ 70 (162)
++++|.+|+|||+|+..+.+
T Consensus 3 i~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999998864
No 495
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.00 E-value=0.015 Score=40.08 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=31.6
Q ss_pred CceeeehH-------HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 23 KLWLGREE-------GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 23 ~~~vGr~~-------~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..++|..- .+.+.+.+. ...+.-|++.+|.+|+|||.+++.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~----~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP----NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC----CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 46778775 223333222 3456788999999999999988887765
No 496
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.00 E-value=0.0069 Score=43.50 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
++.+.|++|+||||++..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999998877553
No 497
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.00 E-value=0.0099 Score=43.42 Aligned_cols=25 Identities=32% Similarity=0.141 Sum_probs=21.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..+.|+|..|+|||||++.+.....
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4789999999999999998876543
No 498
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.99 E-value=0.012 Score=48.86 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...++.++|.+|+||||+|..++....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467899999999999999988765543
No 499
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.98 E-value=0.0094 Score=46.84 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 31 GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 31 ~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
+++..+.... ++..+|+|.|.||+||+||...+......
T Consensus 39 ~ll~~l~p~t-----G~a~viGITG~PGaGKSTli~~L~~~l~~ 77 (323)
T COG1703 39 ELLRALYPRT-----GNAHVIGITGVPGAGKSTLIEALGRELRE 77 (323)
T ss_pred HHHHHHhhcC-----CCCcEEEecCCCCCchHHHHHHHHHHHHH
Confidence 6677666544 67889999999999999999777655443
No 500
>COG3903 Predicted ATPase [General function prediction only]
Probab=95.98 E-value=0.00079 Score=54.68 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=58.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce-------------------------------------------------EE
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN-------------------------------------------------FN 77 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------------------------------------~L 77 (162)
..+.+.++|.||+||||++-.+.. .+.. .+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~l 91 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRAL 91 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhhHH
Confidence 467899999999999999987766 1111 67
Q ss_pred EEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChhhHhhhCCCCeeeCCCCCHH-HHHHHHhhCC
Q 039127 78 FALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQGVASIMGTMPAYELKKLVND-NCLLIFSQHP 144 (162)
Q Consensus 78 lVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a 144 (162)
+|+||..+ -.+.-..+.-.+..+...-.++.|+|..... .....+.+.+|+.. ++.++|...+
T Consensus 92 lvldnceh-l~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra 155 (414)
T COG3903 92 LVLDNCEH-LLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRA 155 (414)
T ss_pred HHhcCcHH-HHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHH
Confidence 77887651 1122222333444444455688888865432 23335677777754 6888886654
Done!