Query 039127
Match_columns 162
No_of_seqs 214 out of 1158
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 10:42:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 2.2E-23 7.6E-28 173.9 11.1 119 19-149 124-311 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.8 4.4E-21 1.5E-25 170.6 7.8 113 21-147 122-302 (1249)
3 1vt4_I APAF-1 related killer D 99.8 3E-19 1E-23 156.6 7.6 105 24-143 129-310 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.8 1.3E-18 4.4E-23 145.6 7.8 112 20-146 121-301 (591)
5 1njg_A DNA polymerase III subu 99.3 2.8E-11 9.6E-16 88.9 10.7 117 22-144 22-198 (250)
6 2chg_A Replication factor C sm 99.2 7.4E-11 2.5E-15 85.7 10.5 117 21-144 15-174 (226)
7 1sxj_B Activator 1 37 kDa subu 99.0 3E-09 1E-13 81.9 9.7 116 22-144 20-179 (323)
8 2qen_A Walker-type ATPase; unk 99.0 6.2E-09 2.1E-13 80.8 11.2 113 21-143 10-215 (350)
9 1iqp_A RFCS; clamp loader, ext 99.0 4.2E-09 1.4E-13 81.2 10.0 117 21-144 23-182 (327)
10 1w5s_A Origin recognition comp 98.9 8.1E-10 2.8E-14 88.0 5.5 117 23-143 22-227 (412)
11 2fna_A Conserved hypothetical 98.9 5.6E-09 1.9E-13 81.2 9.2 67 76-143 139-221 (357)
12 2qby_A CDC6 homolog 1, cell di 98.9 4.7E-09 1.6E-13 82.5 8.4 118 23-143 20-209 (386)
13 2v1u_A Cell division control p 98.9 4.5E-09 1.5E-13 82.7 8.1 118 23-143 19-213 (387)
14 1jbk_A CLPB protein; beta barr 98.9 5.4E-09 1.8E-13 74.1 6.8 111 21-140 20-194 (195)
15 1jr3_A DNA polymerase III subu 98.8 2.9E-08 9.9E-13 78.0 11.5 116 22-143 15-190 (373)
16 2qby_B CDC6 homolog 3, cell di 98.8 1.4E-08 4.9E-13 80.1 9.2 118 23-143 20-209 (384)
17 1fnn_A CDC6P, cell division co 98.8 2.2E-08 7.7E-13 78.9 9.9 117 23-143 17-205 (389)
18 3pvs_A Replication-associated 98.8 3.3E-08 1.1E-12 80.6 10.5 115 21-143 24-177 (447)
19 2chq_A Replication factor C sm 98.8 2.5E-08 8.6E-13 76.6 8.5 117 22-144 16-174 (319)
20 3bos_A Putative DNA replicatio 98.7 1.3E-08 4.4E-13 74.9 5.2 97 48-144 52-187 (242)
21 1hqc_A RUVB; extended AAA-ATPa 98.7 4.3E-08 1.5E-12 75.7 7.9 122 21-144 10-181 (324)
22 3u61_B DNA polymerase accessor 98.7 9E-08 3.1E-12 74.2 9.6 110 21-136 24-170 (324)
23 3pfi_A Holliday junction ATP-d 98.7 6.8E-08 2.3E-12 75.3 8.7 122 21-144 27-197 (338)
24 3h4m_A Proteasome-activating n 98.7 1.1E-07 3.6E-12 72.4 9.4 125 21-145 15-202 (285)
25 3n70_A Transport activator; si 98.6 6.8E-08 2.3E-12 66.8 5.5 85 24-113 2-115 (145)
26 3syl_A Protein CBBX; photosynt 98.6 7.9E-08 2.7E-12 73.8 6.5 95 48-144 67-217 (309)
27 2qz4_A Paraplegin; AAA+, SPG7, 98.6 6E-07 2.1E-11 67.1 11.0 123 22-144 5-190 (262)
28 3uk6_A RUVB-like 2; hexameric 98.6 5.1E-07 1.8E-11 70.9 10.9 67 77-144 192-272 (368)
29 1l8q_A Chromosomal replication 98.6 1.6E-07 5.3E-12 73.0 7.6 96 48-144 37-179 (324)
30 2z4s_A Chromosomal replication 98.5 1.2E-07 4.2E-12 77.0 6.7 97 48-144 130-276 (440)
31 1sxj_D Activator 1 41 kDa subu 98.5 1.6E-07 5.4E-12 73.2 6.9 117 21-144 35-205 (353)
32 2p65_A Hypothetical protein PF 98.5 2.3E-07 7.7E-12 65.5 5.8 44 22-72 21-67 (187)
33 3ec2_A DNA replication protein 98.4 2E-07 6.8E-12 66.4 4.3 67 48-114 38-143 (180)
34 1sxj_E Activator 1 40 kDa subu 98.4 3.4E-06 1.1E-10 65.9 11.5 68 77-144 137-206 (354)
35 2bjv_A PSP operon transcriptio 98.4 1.1E-06 3.9E-11 66.1 8.1 111 23-139 6-189 (265)
36 1sxj_C Activator 1 40 kDa subu 98.4 2.3E-06 7.8E-11 66.9 9.7 115 22-143 24-181 (340)
37 3co5_A Putative two-component 98.4 2.5E-07 8.6E-12 63.8 3.6 63 50-112 29-114 (143)
38 1ojl_A Transcriptional regulat 98.3 2.2E-06 7.5E-11 66.3 8.8 112 23-140 2-186 (304)
39 2qp9_X Vacuolar protein sortin 98.3 4.9E-06 1.7E-10 65.6 10.9 96 49-144 85-230 (355)
40 1sxj_A Activator 1 95 kDa subu 98.3 4.2E-06 1.4E-10 69.2 10.7 123 21-144 37-222 (516)
41 4fcw_A Chaperone protein CLPB; 98.3 6.2E-06 2.1E-10 63.1 10.9 121 23-143 17-228 (311)
42 2kjq_A DNAA-related protein; s 98.3 3.7E-07 1.3E-11 63.6 3.6 84 23-113 18-124 (149)
43 3b9p_A CG5977-PA, isoform A; A 98.3 2.3E-05 7.9E-10 59.7 13.4 121 21-143 19-201 (297)
44 3eie_A Vacuolar protein sortin 98.3 1E-05 3.5E-10 62.8 11.4 123 22-144 17-197 (322)
45 1d2n_A N-ethylmaleimide-sensit 98.2 3.2E-06 1.1E-10 63.9 7.8 97 46-142 62-210 (272)
46 1ofh_A ATP-dependent HSL prote 98.2 4.4E-06 1.5E-10 63.7 8.6 95 49-143 51-214 (310)
47 2r44_A Uncharacterized protein 98.2 7.4E-06 2.5E-10 63.5 9.9 114 22-144 26-198 (331)
48 3cf0_A Transitional endoplasmi 98.2 1.2E-05 4E-10 61.9 10.9 97 48-144 49-199 (301)
49 3pxi_A Negative regulator of g 98.2 9.8E-06 3.4E-10 69.8 10.2 120 23-142 491-673 (758)
50 1a5t_A Delta prime, HOLB; zinc 98.2 1.7E-05 5.9E-10 61.9 10.6 97 48-144 24-180 (334)
51 1qvr_A CLPB protein; coiled co 98.2 4.8E-06 1.6E-10 72.7 8.0 112 22-142 169-343 (854)
52 3d8b_A Fidgetin-like protein 1 98.2 1.5E-05 5.3E-10 62.8 10.3 122 22-143 83-263 (357)
53 2zan_A Vacuolar protein sortin 98.1 4E-05 1.4E-09 62.2 12.8 123 22-144 133-314 (444)
54 3vfd_A Spastin; ATPase, microt 98.1 2.5E-05 8.6E-10 62.1 11.4 123 22-144 114-295 (389)
55 3hu3_A Transitional endoplasmi 98.1 9.3E-06 3.2E-10 66.8 9.0 97 48-144 238-385 (489)
56 2gno_A DNA polymerase III, gam 98.1 9.3E-06 3.2E-10 62.9 8.5 96 48-144 18-152 (305)
57 2w58_A DNAI, primosome compone 98.1 6.7E-07 2.3E-11 64.6 1.6 24 49-72 55-78 (202)
58 1r6b_X CLPA protein; AAA+, N-t 98.0 2.8E-05 9.5E-10 66.9 9.2 112 23-142 186-360 (758)
59 3pxg_A Negative regulator of g 98.0 1.8E-05 6E-10 64.7 7.5 110 22-144 179-338 (468)
60 3te6_A Regulatory protein SIR3 98.0 7.4E-06 2.5E-10 63.9 5.0 46 24-72 21-69 (318)
61 1xwi_A SKD1 protein; VPS4B, AA 98.0 6.8E-05 2.3E-09 58.3 10.4 97 48-144 45-192 (322)
62 1g8p_A Magnesium-chelatase 38 98.0 3.8E-05 1.3E-09 59.6 9.0 43 23-72 24-69 (350)
63 1r6b_X CLPA protein; AAA+, N-t 97.9 9.2E-05 3.1E-09 63.7 11.8 96 48-143 488-665 (758)
64 1in4_A RUVB, holliday junction 97.9 3.1E-05 1.1E-09 60.4 7.3 123 21-144 23-193 (334)
65 3nbx_X ATPase RAVA; AAA+ ATPas 97.9 0.00013 4.5E-09 60.1 11.0 113 23-144 22-196 (500)
66 3pxi_A Negative regulator of g 97.8 7.3E-05 2.5E-09 64.4 9.5 110 22-144 179-338 (758)
67 4b4t_J 26S protease regulatory 97.8 0.00014 4.7E-09 58.4 10.3 96 48-143 182-331 (405)
68 2x8a_A Nuclear valosin-contain 97.8 0.0002 6.7E-09 54.5 10.3 94 51-144 47-191 (274)
69 3t15_A Ribulose bisphosphate c 97.8 3.4E-05 1.2E-09 59.2 6.0 27 47-73 35-61 (293)
70 1lv7_A FTSH; alpha/beta domain 97.8 6.7E-05 2.3E-09 56.0 7.2 122 22-143 11-194 (257)
71 2r62_A Cell division protease 97.8 9.5E-06 3.3E-10 61.0 2.5 94 51-144 47-196 (268)
72 1tue_A Replication protein E1; 97.8 8.5E-06 2.9E-10 59.8 2.1 45 48-95 58-121 (212)
73 2qgz_A Helicase loader, putati 97.7 8.7E-06 3E-10 63.1 1.9 24 48-71 152-175 (308)
74 3m6a_A ATP-dependent protease 97.7 0.00011 3.8E-09 61.1 8.5 97 47-143 107-265 (543)
75 4b4t_L 26S protease subunit RP 97.7 0.00019 6.6E-09 58.2 9.4 97 47-143 214-364 (437)
76 1um8_A ATP-dependent CLP prote 97.7 0.00018 6E-09 56.8 9.0 24 49-72 73-96 (376)
77 2ce7_A Cell division protein F 97.7 0.00015 5.1E-09 59.5 8.3 122 22-143 15-198 (476)
78 1qvr_A CLPB protein; coiled co 97.7 0.00024 8.4E-09 62.0 9.9 66 48-113 588-710 (854)
79 4b4t_M 26S protease regulatory 97.6 0.00016 5.5E-09 58.6 8.0 97 47-143 214-364 (434)
80 4b4t_H 26S protease regulatory 97.6 0.00018 6.2E-09 58.7 8.1 98 47-144 242-393 (467)
81 2dhr_A FTSH; AAA+ protein, hex 97.6 0.00047 1.6E-08 56.9 9.9 123 22-144 30-214 (499)
82 1ixz_A ATP-dependent metallopr 97.6 0.0004 1.4E-08 51.6 8.7 93 51-143 52-198 (254)
83 1u0j_A DNA replication protein 97.6 0.00063 2.2E-08 51.7 9.8 93 48-141 104-248 (267)
84 1iy2_A ATP-dependent metallopr 97.5 0.00041 1.4E-08 52.4 8.7 93 51-143 76-222 (278)
85 3cf2_A TER ATPase, transitiona 97.5 0.0004 1.4E-08 60.3 9.1 98 47-144 237-385 (806)
86 3hws_A ATP-dependent CLP prote 97.5 0.00024 8.2E-09 55.8 6.9 25 48-72 51-75 (363)
87 4b4t_I 26S protease regulatory 97.5 0.00029 9.8E-09 57.0 7.2 98 47-144 215-366 (437)
88 1ypw_A Transitional endoplasmi 97.4 0.0011 3.8E-08 57.6 10.4 97 48-144 238-385 (806)
89 3k1j_A LON protease, ATP-depen 97.4 0.00024 8.2E-09 59.8 5.7 41 23-71 41-83 (604)
90 3lw7_A Adenylate kinase relate 97.3 0.00011 3.8E-09 50.9 2.8 24 49-73 2-25 (179)
91 1qhx_A CPT, protein (chloramph 97.3 0.00012 4.1E-09 51.4 2.8 29 49-77 4-32 (178)
92 3kb2_A SPBC2 prophage-derived 97.3 0.00013 4.5E-09 50.6 2.6 25 49-73 2-26 (173)
93 1ly1_A Polynucleotide kinase; 97.2 0.0002 6.7E-09 50.1 3.3 22 49-70 3-24 (181)
94 1zp6_A Hypothetical protein AT 97.2 0.00021 7.3E-09 50.6 3.4 26 48-73 9-34 (191)
95 1gvn_B Zeta; postsegregational 97.2 0.00042 1.4E-08 53.0 4.9 40 31-72 18-57 (287)
96 3c8u_A Fructokinase; YP_612366 97.2 0.00042 1.4E-08 50.2 4.5 27 47-73 21-47 (208)
97 2orw_A Thymidine kinase; TMTK, 97.2 0.0004 1.4E-08 49.7 4.3 21 49-69 4-24 (184)
98 1nks_A Adenylate kinase; therm 97.1 0.00024 8.2E-09 50.2 3.0 25 49-73 2-26 (194)
99 4b4t_K 26S protease regulatory 97.1 0.00033 1.1E-08 56.7 4.1 29 47-75 205-233 (428)
100 3vaa_A Shikimate kinase, SK; s 97.1 0.00024 8.1E-09 51.1 2.8 26 48-73 25-50 (199)
101 3trf_A Shikimate kinase, SK; a 97.1 0.00023 7.8E-09 50.3 2.6 26 48-73 5-30 (185)
102 1kag_A SKI, shikimate kinase I 97.1 0.00021 7.2E-09 49.8 2.3 25 49-73 5-29 (173)
103 2rhm_A Putative kinase; P-loop 97.1 0.0004 1.4E-08 49.1 3.7 26 48-73 5-30 (193)
104 1rz3_A Hypothetical protein rb 97.1 0.00064 2.2E-08 49.0 4.8 37 31-71 9-45 (201)
105 2p5t_B PEZT; postsegregational 97.1 0.00051 1.7E-08 51.4 4.4 41 31-73 17-57 (253)
106 3uie_A Adenylyl-sulfate kinase 97.1 0.00038 1.3E-08 50.0 3.6 25 48-72 25-49 (200)
107 3f9v_A Minichromosome maintena 97.1 0.00038 1.3E-08 58.6 4.1 50 50-99 329-416 (595)
108 1knq_A Gluconate kinase; ALFA/ 97.0 0.00047 1.6E-08 48.2 3.7 26 47-72 7-32 (175)
109 1kht_A Adenylate kinase; phosp 97.0 0.00033 1.1E-08 49.4 2.8 24 49-72 4-27 (192)
110 2c9o_A RUVB-like 1; hexameric 97.0 0.00067 2.3E-08 55.1 5.0 46 23-73 37-88 (456)
111 3t61_A Gluconokinase; PSI-biol 97.0 0.00022 7.6E-09 51.2 1.9 25 48-72 18-42 (202)
112 2jaq_A Deoxyguanosine kinase; 97.0 0.00034 1.2E-08 49.8 2.8 24 50-73 2-25 (205)
113 1kgd_A CASK, peripheral plasma 97.0 0.00035 1.2E-08 49.5 2.8 24 49-72 6-29 (180)
114 1ukz_A Uridylate kinase; trans 97.0 0.0005 1.7E-08 49.3 3.7 28 46-73 13-40 (203)
115 1uf9_A TT1252 protein; P-loop, 97.0 0.00053 1.8E-08 48.9 3.6 25 47-71 7-31 (203)
116 2ze6_A Isopentenyl transferase 97.0 0.00041 1.4E-08 52.0 3.0 25 49-73 2-26 (253)
117 1tev_A UMP-CMP kinase; ploop, 97.0 0.0005 1.7E-08 48.5 3.3 26 48-73 3-28 (196)
118 4eun_A Thermoresistant glucoki 97.0 0.00042 1.4E-08 49.8 2.8 25 48-72 29-53 (200)
119 3iij_A Coilin-interacting nucl 96.9 0.00031 1E-08 49.5 2.1 26 48-73 11-36 (180)
120 2bdt_A BH3686; alpha-beta prot 96.9 0.00056 1.9E-08 48.5 3.4 24 49-72 3-26 (189)
121 1zuh_A Shikimate kinase; alpha 96.9 0.00047 1.6E-08 48.0 2.8 27 47-73 6-32 (168)
122 3cm0_A Adenylate kinase; ATP-b 96.9 0.00056 1.9E-08 48.2 3.3 25 48-72 4-28 (186)
123 3asz_A Uridine kinase; cytidin 96.9 0.00061 2.1E-08 49.1 3.5 27 47-73 5-31 (211)
124 3nh6_A ATP-binding cassette SU 96.9 0.0023 8E-08 49.5 7.0 25 49-73 81-105 (306)
125 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00056 1.9E-08 51.4 3.4 24 48-71 4-27 (260)
126 2plr_A DTMP kinase, probable t 96.9 0.00056 1.9E-08 49.0 3.3 25 49-73 5-29 (213)
127 3tr0_A Guanylate kinase, GMP k 96.9 0.00055 1.9E-08 49.0 3.2 24 49-72 8-31 (205)
128 2c95_A Adenylate kinase 1; tra 96.9 0.00053 1.8E-08 48.6 3.0 26 48-73 9-34 (196)
129 1y63_A LMAJ004144AAA protein; 96.9 0.00057 1.9E-08 48.5 3.1 24 48-71 10-33 (184)
130 2qt1_A Nicotinamide riboside k 96.9 0.00086 2.9E-08 48.3 4.1 26 47-72 20-45 (207)
131 2yvu_A Probable adenylyl-sulfa 96.9 0.00075 2.6E-08 47.8 3.7 26 47-72 12-37 (186)
132 4gp7_A Metallophosphoesterase; 96.9 0.00055 1.9E-08 48.1 3.0 22 48-69 9-30 (171)
133 2j41_A Guanylate kinase; GMP, 96.9 0.00058 2E-08 48.8 3.1 24 49-72 7-30 (207)
134 3tau_A Guanylate kinase, GMP k 96.9 0.00066 2.3E-08 49.2 3.4 26 48-73 8-33 (208)
135 2qor_A Guanylate kinase; phosp 96.9 0.00038 1.3E-08 50.2 2.1 25 48-72 12-36 (204)
136 2cdn_A Adenylate kinase; phosp 96.9 0.00065 2.2E-08 48.7 3.4 27 47-73 19-45 (201)
137 3dzd_A Transcriptional regulat 96.9 0.0057 1.9E-07 48.3 9.0 50 51-100 155-248 (368)
138 2vli_A Antibiotic resistance p 96.9 0.00037 1.3E-08 48.9 2.0 29 48-76 5-33 (183)
139 2bwj_A Adenylate kinase 5; pho 96.9 0.00048 1.6E-08 49.0 2.6 25 49-73 13-37 (199)
140 1via_A Shikimate kinase; struc 96.9 0.00049 1.7E-08 48.2 2.6 25 50-74 6-30 (175)
141 2if2_A Dephospho-COA kinase; a 96.9 0.00059 2E-08 48.9 3.0 21 50-70 3-23 (204)
142 2iyv_A Shikimate kinase, SK; t 96.9 0.00039 1.4E-08 49.0 2.1 24 50-73 4-27 (184)
143 1qf9_A UMP/CMP kinase, protein 96.8 0.00087 3E-08 47.2 3.8 26 48-73 6-31 (194)
144 1cke_A CK, MSSA, protein (cyti 96.8 0.00062 2.1E-08 49.5 3.0 24 49-72 6-29 (227)
145 1jjv_A Dephospho-COA kinase; P 96.8 0.00077 2.6E-08 48.4 3.5 22 49-70 3-24 (206)
146 2pt5_A Shikimate kinase, SK; a 96.8 0.00062 2.1E-08 47.2 2.8 24 50-73 2-25 (168)
147 2pbr_A DTMP kinase, thymidylat 96.8 0.00063 2.2E-08 48.1 2.9 23 50-72 2-24 (195)
148 1e6c_A Shikimate kinase; phosp 96.8 0.00051 1.7E-08 47.8 2.3 25 49-73 3-27 (173)
149 2lkc_A Translation initiation 96.8 0.0078 2.7E-07 41.4 8.4 25 47-71 7-31 (178)
150 3fwy_A Light-independent proto 96.8 0.00082 2.8E-08 52.2 3.6 25 46-70 46-70 (314)
151 3tw8_B RAS-related protein RAB 96.8 0.0026 8.8E-08 43.9 5.9 26 47-72 8-33 (181)
152 3a00_A Guanylate kinase, GMP k 96.8 0.00058 2E-08 48.5 2.4 24 49-72 2-25 (186)
153 2bbw_A Adenylate kinase 4, AK4 96.8 0.00079 2.7E-08 49.9 3.2 24 48-71 27-50 (246)
154 1ye8_A Protein THEP1, hypothet 96.8 0.00079 2.7E-08 47.9 3.0 21 50-70 2-22 (178)
155 1aky_A Adenylate kinase; ATP:A 96.8 0.00075 2.6E-08 49.1 3.0 26 48-73 4-29 (220)
156 1odf_A YGR205W, hypothetical 3 96.8 0.001 3.6E-08 51.0 3.8 27 46-72 29-55 (290)
157 1uj2_A Uridine-cytidine kinase 96.7 0.00094 3.2E-08 49.8 3.4 28 46-73 20-47 (252)
158 2pez_A Bifunctional 3'-phospho 96.7 0.001 3.5E-08 46.7 3.4 25 48-72 5-29 (179)
159 1zd8_A GTP:AMP phosphotransfer 96.7 0.00074 2.5E-08 49.4 2.7 26 48-73 7-32 (227)
160 2v54_A DTMP kinase, thymidylat 96.7 0.00088 3E-08 47.8 3.1 24 49-72 5-28 (204)
161 2wwf_A Thymidilate kinase, put 96.7 0.00081 2.8E-08 48.3 2.8 24 48-71 10-33 (212)
162 3zvl_A Bifunctional polynucleo 96.7 0.0051 1.7E-07 49.4 7.7 27 47-73 257-283 (416)
163 1nn5_A Similar to deoxythymidy 96.7 0.00094 3.2E-08 48.0 3.1 24 48-71 9-32 (215)
164 3cf2_A TER ATPase, transitiona 96.7 0.0025 8.6E-08 55.4 6.1 97 48-144 511-661 (806)
165 3umf_A Adenylate kinase; rossm 96.7 0.0011 3.6E-08 48.9 3.3 30 46-75 27-56 (217)
166 1gtv_A TMK, thymidylate kinase 96.7 0.0005 1.7E-08 49.5 1.5 23 50-72 2-24 (214)
167 3jvv_A Twitching mobility prot 96.7 0.003 1E-07 49.8 6.1 65 49-118 124-235 (356)
168 3fb4_A Adenylate kinase; psych 96.7 0.00092 3.2E-08 48.3 2.8 23 50-72 2-24 (216)
169 1lvg_A Guanylate kinase, GMP k 96.7 0.00079 2.7E-08 48.5 2.4 22 49-70 5-26 (198)
170 1m7b_A RND3/RHOE small GTP-bin 96.7 0.0038 1.3E-07 43.7 6.0 24 48-71 7-30 (184)
171 3dl0_A Adenylate kinase; phosp 96.7 0.00099 3.4E-08 48.2 3.0 24 50-73 2-25 (216)
172 2z0h_A DTMP kinase, thymidylat 96.7 0.0011 3.6E-08 47.1 3.1 23 50-72 2-24 (197)
173 1zj6_A ADP-ribosylation factor 96.6 0.019 6.5E-07 40.0 9.5 25 48-72 16-40 (187)
174 1znw_A Guanylate kinase, GMP k 96.6 0.0012 4.1E-08 47.7 3.2 24 49-72 21-44 (207)
175 1m7g_A Adenylylsulfate kinase; 96.6 0.0014 4.8E-08 47.4 3.5 25 48-72 25-49 (211)
176 3be4_A Adenylate kinase; malar 96.6 0.00087 3E-08 48.8 2.4 25 49-73 6-30 (217)
177 3q3j_B RHO-related GTP-binding 96.6 0.0039 1.3E-07 45.0 5.8 24 49-72 28-51 (214)
178 1zak_A Adenylate kinase; ATP:A 96.6 0.00083 2.8E-08 48.9 2.2 26 48-73 5-30 (222)
179 3aez_A Pantothenate kinase; tr 96.6 0.0016 5.5E-08 50.4 4.0 26 46-71 88-113 (312)
180 4e22_A Cytidylate kinase; P-lo 96.6 0.0013 4.5E-08 49.1 3.2 24 48-71 27-50 (252)
181 2jeo_A Uridine-cytidine kinase 96.6 0.0016 5.6E-08 48.2 3.7 24 48-71 25-48 (245)
182 1ex7_A Guanylate kinase; subst 96.6 0.00091 3.1E-08 48.1 2.1 24 49-72 2-25 (186)
183 2f6r_A COA synthase, bifunctio 96.6 0.0017 5.8E-08 49.4 3.8 24 47-70 74-97 (281)
184 4a74_A DNA repair and recombin 96.6 0.0016 5.3E-08 47.2 3.4 23 48-70 25-47 (231)
185 1moz_A ARL1, ADP-ribosylation 96.5 0.0092 3.2E-07 41.3 7.3 24 48-71 18-41 (183)
186 3tlx_A Adenylate kinase 2; str 96.5 0.0015 5.1E-08 48.6 3.3 26 47-72 28-53 (243)
187 1upt_A ARL1, ADP-ribosylation 96.5 0.023 7.8E-07 38.6 9.2 25 48-72 7-31 (171)
188 1xjc_A MOBB protein homolog; s 96.5 0.0014 4.8E-08 46.4 2.8 26 47-72 3-28 (169)
189 2grj_A Dephospho-COA kinase; T 96.5 0.002 6.9E-08 46.4 3.7 26 46-71 10-35 (192)
190 3ney_A 55 kDa erythrocyte memb 96.5 0.0014 4.7E-08 47.6 2.8 26 47-72 18-43 (197)
191 2ehv_A Hypothetical protein PH 96.5 0.0016 5.4E-08 47.8 3.2 21 49-69 31-51 (251)
192 3dz8_A RAS-related protein RAB 96.5 0.0043 1.5E-07 43.7 5.4 24 49-72 24-47 (191)
193 1vht_A Dephospho-COA kinase; s 96.5 0.0017 5.8E-08 47.1 3.3 23 48-70 4-26 (218)
194 3tqc_A Pantothenate kinase; bi 96.5 0.0036 1.2E-07 48.7 5.3 27 46-72 90-116 (321)
195 1ypw_A Transitional endoplasmi 96.5 0.00022 7.7E-09 61.9 -1.8 97 48-144 511-661 (806)
196 1z6g_A Guanylate kinase; struc 96.5 0.0013 4.6E-08 48.0 2.6 24 49-72 24-47 (218)
197 1htw_A HI0065; nucleotide-bind 96.5 0.002 7E-08 44.9 3.4 25 48-72 33-57 (158)
198 2hf9_A Probable hydrogenase ni 96.5 0.002 6.9E-08 46.6 3.5 25 47-71 37-61 (226)
199 1gwn_A RHO-related GTP-binding 96.5 0.0043 1.5E-07 44.6 5.2 25 48-72 28-52 (205)
200 1ltq_A Polynucleotide kinase; 96.5 0.0018 6E-08 49.3 3.3 23 49-71 3-25 (301)
201 1rj9_A FTSY, signal recognitio 96.5 0.0018 6.2E-08 50.0 3.3 25 47-71 101-125 (304)
202 3llu_A RAS-related GTP-binding 96.5 0.0077 2.6E-07 42.6 6.5 25 48-72 20-44 (196)
203 2h17_A ADP-ribosylation factor 96.5 0.013 4.5E-07 40.7 7.6 26 48-73 21-46 (181)
204 4dkx_A RAS-related protein RAB 96.4 0.0054 1.9E-07 44.8 5.7 23 50-72 15-37 (216)
205 1z0j_A RAB-22, RAS-related pro 96.4 0.0059 2E-07 41.6 5.7 24 49-72 7-30 (170)
206 1e4v_A Adenylate kinase; trans 96.4 0.0018 6.1E-08 46.9 3.0 24 50-73 2-25 (214)
207 2xb4_A Adenylate kinase; ATP-b 96.4 0.0016 5.5E-08 47.6 2.8 24 50-73 2-25 (223)
208 3tkl_A RAS-related protein RAB 96.4 0.0072 2.5E-07 42.4 6.2 26 47-72 15-40 (196)
209 3lxw_A GTPase IMAP family memb 96.4 0.009 3.1E-07 44.4 6.9 26 47-72 20-45 (247)
210 1ak2_A Adenylate kinase isoenz 96.4 0.0017 5.8E-08 47.7 2.9 26 48-73 16-41 (233)
211 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0035 1.2E-07 49.5 4.7 26 47-72 23-48 (359)
212 3q72_A GTP-binding protein RAD 96.4 0.006 2.1E-07 41.5 5.5 23 50-72 4-26 (166)
213 1z0f_A RAB14, member RAS oncog 96.4 0.009 3.1E-07 41.0 6.4 26 47-72 14-39 (179)
214 3ake_A Cytidylate kinase; CMP 96.4 0.002 6.7E-08 46.0 3.1 24 50-73 4-27 (208)
215 1s96_A Guanylate kinase, GMP k 96.4 0.0019 6.5E-08 47.5 3.0 26 48-73 16-41 (219)
216 1zd9_A ADP-ribosylation factor 96.4 0.018 6E-07 40.4 8.0 25 48-72 22-46 (188)
217 3nwj_A ATSK2; P loop, shikimat 96.4 0.0014 4.8E-08 49.2 2.3 25 49-73 49-73 (250)
218 3reg_A RHO-like small GTPase; 96.4 0.0054 1.8E-07 43.2 5.3 25 48-72 23-47 (194)
219 3kkq_A RAS-related protein M-R 96.4 0.027 9.2E-07 38.9 8.8 26 47-72 17-42 (183)
220 3e1s_A Exodeoxyribonuclease V, 96.4 0.0056 1.9E-07 51.3 6.0 59 49-110 205-312 (574)
221 2wsm_A Hydrogenase expression/ 96.3 0.0025 8.4E-08 46.0 3.4 25 47-71 29-53 (221)
222 1yrb_A ATP(GTP)binding protein 96.3 0.003 1E-07 46.8 3.9 26 46-71 12-37 (262)
223 3sr0_A Adenylate kinase; phosp 96.3 0.0019 6.4E-08 47.1 2.6 26 50-75 2-27 (206)
224 3con_A GTPase NRAS; structural 96.3 0.01 3.4E-07 41.5 6.4 24 49-72 22-45 (190)
225 1sq5_A Pantothenate kinase; P- 96.3 0.0027 9.3E-08 48.8 3.7 26 47-72 79-104 (308)
226 2gf9_A RAS-related protein RAB 96.3 0.0077 2.6E-07 42.2 5.8 25 48-72 22-46 (189)
227 2cvh_A DNA repair and recombin 96.3 0.0025 8.4E-08 45.9 3.2 23 48-70 20-42 (220)
228 1x3s_A RAS-related protein RAB 96.3 0.0098 3.4E-07 41.5 6.3 24 49-72 16-39 (195)
229 2f1r_A Molybdopterin-guanine d 96.3 0.0016 5.3E-08 46.2 2.0 23 49-71 3-25 (171)
230 3lnc_A Guanylate kinase, GMP k 96.3 0.0015 5.3E-08 47.8 2.0 23 49-71 28-51 (231)
231 3bwd_D RAC-like GTP-binding pr 96.3 0.0055 1.9E-07 42.4 4.8 24 49-72 9-32 (182)
232 3a8t_A Adenylate isopentenyltr 96.3 0.0033 1.1E-07 49.3 4.0 26 48-73 40-65 (339)
233 3qf4_B Uncharacterized ABC tra 96.3 0.011 3.7E-07 49.6 7.4 25 49-73 382-406 (598)
234 2dyk_A GTP-binding protein; GT 96.3 0.0032 1.1E-07 42.6 3.5 24 49-72 2-25 (161)
235 2onk_A Molybdate/tungstate ABC 96.3 0.0026 8.8E-08 47.4 3.1 26 49-74 25-50 (240)
236 3d3q_A TRNA delta(2)-isopenten 96.3 0.0027 9.1E-08 49.9 3.3 34 49-83 8-41 (340)
237 3tif_A Uncharacterized ABC tra 96.2 0.0024 8.2E-08 47.4 2.9 27 49-75 32-58 (235)
238 3p32_A Probable GTPase RV1496/ 96.2 0.0047 1.6E-07 48.5 4.7 26 46-71 77-102 (355)
239 2fg5_A RAB-22B, RAS-related pr 96.2 0.013 4.4E-07 41.2 6.6 25 48-72 23-47 (192)
240 2wji_A Ferrous iron transport 96.2 0.0041 1.4E-07 42.8 3.9 23 49-71 4-26 (165)
241 3crm_A TRNA delta(2)-isopenten 96.2 0.0029 1E-07 49.3 3.3 25 49-73 6-30 (323)
242 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.003 1E-07 45.7 3.2 23 49-71 24-46 (235)
243 2pcj_A ABC transporter, lipopr 96.2 0.0025 8.7E-08 46.9 2.8 26 49-74 31-56 (224)
244 2i3b_A HCR-ntpase, human cance 96.2 0.0024 8.3E-08 45.8 2.7 22 50-71 3-24 (189)
245 3b9q_A Chloroplast SRP recepto 96.2 0.0034 1.2E-07 48.4 3.7 26 47-72 99-124 (302)
246 4gzl_A RAS-related C3 botulinu 96.2 0.0061 2.1E-07 43.5 4.8 25 48-72 30-54 (204)
247 1oix_A RAS-related protein RAB 96.2 0.0034 1.2E-07 44.5 3.4 25 48-72 29-53 (191)
248 2nzj_A GTP-binding protein REM 96.2 0.023 7.7E-07 38.8 7.5 25 48-72 4-28 (175)
249 2px0_A Flagellar biosynthesis 96.2 0.0029 1E-07 48.6 3.2 25 47-71 104-128 (296)
250 3b85_A Phosphate starvation-in 96.2 0.0026 8.8E-08 46.4 2.7 22 50-71 24-45 (208)
251 2wjg_A FEOB, ferrous iron tran 96.2 0.0054 1.8E-07 42.8 4.3 25 47-71 6-30 (188)
252 3r20_A Cytidylate kinase; stru 96.2 0.0027 9.2E-08 47.2 2.8 26 48-73 9-34 (233)
253 2b6h_A ADP-ribosylation factor 96.2 0.023 8E-07 40.0 7.7 25 48-72 29-53 (192)
254 3e70_C DPA, signal recognition 96.1 0.0043 1.5E-07 48.4 3.9 27 46-72 127-153 (328)
255 2atx_A Small GTP binding prote 96.1 0.007 2.4E-07 42.5 4.8 25 48-72 18-42 (194)
256 1n0w_A DNA repair protein RAD5 96.1 0.0034 1.2E-07 45.8 3.2 22 49-70 25-46 (243)
257 2zej_A Dardarin, leucine-rich 96.1 0.0028 9.7E-08 44.4 2.7 22 50-71 4-25 (184)
258 1vma_A Cell division protein F 96.1 0.0044 1.5E-07 47.9 3.9 27 46-72 102-128 (306)
259 3oes_A GTPase rhebl1; small GT 96.1 0.013 4.6E-07 41.4 6.3 26 47-72 23-48 (201)
260 1np6_A Molybdopterin-guanine d 96.1 0.0032 1.1E-07 44.7 2.8 24 48-71 6-29 (174)
261 2cbz_A Multidrug resistance-as 96.1 0.0031 1.1E-07 46.8 2.9 25 49-73 32-56 (237)
262 2ce2_X GTPase HRAS; signaling 96.1 0.0036 1.2E-07 42.3 3.0 23 50-72 5-27 (166)
263 3upu_A ATP-dependent DNA helic 96.1 0.0058 2E-07 49.5 4.7 21 50-70 47-67 (459)
264 3q85_A GTP-binding protein REM 96.1 0.015 5.3E-07 39.5 6.3 22 49-70 3-24 (169)
265 2j0v_A RAC-like GTP-binding pr 96.1 0.012 4.1E-07 42.0 5.9 25 48-72 9-33 (212)
266 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.025 8.4E-07 38.8 7.4 25 48-72 7-31 (177)
267 2ocp_A DGK, deoxyguanosine kin 96.1 0.0037 1.3E-07 46.1 3.2 26 48-73 2-27 (241)
268 1z2a_A RAS-related protein RAB 96.1 0.0051 1.8E-07 41.8 3.8 25 48-72 5-29 (168)
269 1b0u_A Histidine permease; ABC 96.1 0.0031 1.1E-07 47.5 2.9 26 49-74 33-58 (262)
270 2d2e_A SUFC protein; ABC-ATPas 96.1 0.0037 1.3E-07 46.7 3.2 23 49-71 30-52 (250)
271 4a82_A Cystic fibrosis transme 96.1 0.011 3.9E-07 49.3 6.5 25 49-73 368-392 (578)
272 3gfo_A Cobalt import ATP-bindi 96.1 0.0032 1.1E-07 47.9 2.9 24 49-72 35-58 (275)
273 1q3t_A Cytidylate kinase; nucl 96.1 0.0037 1.3E-07 46.0 3.1 27 46-72 14-40 (236)
274 3end_A Light-independent proto 96.1 0.0043 1.5E-07 47.3 3.6 27 45-71 38-64 (307)
275 1ji0_A ABC transporter; ATP bi 96.1 0.0034 1.2E-07 46.6 2.9 26 49-74 33-58 (240)
276 2f9l_A RAB11B, member RAS onco 96.1 0.0036 1.2E-07 44.5 2.9 25 48-72 5-29 (199)
277 1ny5_A Transcriptional regulat 96.0 0.024 8.2E-07 45.0 8.0 50 51-100 163-257 (387)
278 1mv5_A LMRA, multidrug resista 96.0 0.0038 1.3E-07 46.5 3.1 25 49-73 29-53 (243)
279 4eaq_A DTMP kinase, thymidylat 96.0 0.0041 1.4E-07 45.9 3.3 27 47-73 25-51 (229)
280 2vp4_A Deoxynucleoside kinase; 96.0 0.0034 1.2E-07 46.1 2.8 26 46-71 18-43 (230)
281 1g6h_A High-affinity branched- 96.0 0.0034 1.2E-07 47.1 2.9 26 49-74 34-59 (257)
282 4g1u_C Hemin import ATP-bindin 96.0 0.0034 1.2E-07 47.5 2.9 25 49-73 38-62 (266)
283 1fzq_A ADP-ribosylation factor 96.0 0.0064 2.2E-07 42.5 4.1 26 47-72 15-40 (181)
284 1kao_A RAP2A; GTP-binding prot 96.0 0.015 5E-07 39.3 5.9 24 49-72 4-27 (167)
285 1a7j_A Phosphoribulokinase; tr 96.0 0.002 6.8E-08 49.3 1.5 37 48-84 5-45 (290)
286 2zu0_C Probable ATP-dependent 96.0 0.004 1.4E-07 47.1 3.2 23 49-71 47-69 (267)
287 3b5x_A Lipid A export ATP-bind 96.0 0.026 8.8E-07 47.2 8.4 24 49-72 370-393 (582)
288 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0043 1.5E-07 48.4 3.4 22 49-70 124-145 (331)
289 1u8z_A RAS-related protein RAL 96.0 0.025 8.4E-07 38.2 7.0 25 48-72 4-28 (168)
290 2fv8_A H6, RHO-related GTP-bin 96.0 0.0085 2.9E-07 42.8 4.8 25 48-72 25-49 (207)
291 2g3y_A GTP-binding protein GEM 96.0 0.045 1.5E-06 39.6 8.7 23 48-70 37-59 (211)
292 2olj_A Amino acid ABC transpor 96.0 0.0037 1.3E-07 47.3 2.9 25 49-73 51-75 (263)
293 3qf4_A ABC transporter, ATP-bi 96.0 0.015 5.1E-07 48.7 6.8 25 49-73 370-394 (587)
294 2pze_A Cystic fibrosis transme 96.0 0.0038 1.3E-07 46.1 2.9 25 49-73 35-59 (229)
295 1cr0_A DNA primase/helicase; R 96.0 0.0041 1.4E-07 47.2 3.2 23 49-71 36-58 (296)
296 3exa_A TRNA delta(2)-isopenten 96.0 0.0046 1.6E-07 48.1 3.5 26 48-73 3-28 (322)
297 2ff7_A Alpha-hemolysin translo 96.0 0.0038 1.3E-07 46.7 2.9 26 49-74 36-61 (247)
298 2og2_A Putative signal recogni 96.0 0.0048 1.6E-07 48.8 3.5 26 47-72 156-181 (359)
299 1nlf_A Regulatory protein REPA 96.0 0.0045 1.5E-07 46.7 3.2 22 49-70 31-52 (279)
300 2ged_A SR-beta, signal recogni 96.0 0.0077 2.6E-07 42.2 4.3 26 47-72 47-72 (193)
301 2ixe_A Antigen peptide transpo 95.9 0.004 1.4E-07 47.2 2.9 26 49-74 46-71 (271)
302 1vpl_A ABC transporter, ATP-bi 95.9 0.0041 1.4E-07 46.8 2.9 25 49-73 42-66 (256)
303 2ghi_A Transport protein; mult 95.9 0.0041 1.4E-07 46.8 2.9 25 49-73 47-71 (260)
304 1jr3_D DNA polymerase III, del 95.9 0.025 8.5E-07 43.8 7.4 96 48-143 18-154 (343)
305 1p5z_B DCK, deoxycytidine kina 95.9 0.003 1E-07 47.2 2.1 27 47-73 23-49 (263)
306 1sgw_A Putative ABC transporte 95.9 0.0034 1.2E-07 46.0 2.3 26 49-74 36-61 (214)
307 2eyu_A Twitching motility prot 95.9 0.005 1.7E-07 46.4 3.3 23 48-70 25-47 (261)
308 2qmh_A HPR kinase/phosphorylas 95.9 0.0083 2.8E-07 43.7 4.3 25 49-73 35-59 (205)
309 1zu4_A FTSY; GTPase, signal re 95.9 0.0064 2.2E-07 47.2 3.9 26 46-71 103-128 (320)
310 2yz2_A Putative ABC transporte 95.9 0.0044 1.5E-07 46.8 2.9 26 49-74 34-59 (266)
311 1nrj_B SR-beta, signal recogni 95.9 0.0056 1.9E-07 43.9 3.4 26 47-72 11-36 (218)
312 1svi_A GTP-binding protein YSX 95.9 0.0062 2.1E-07 42.7 3.5 26 47-72 22-47 (195)
313 3dm5_A SRP54, signal recogniti 95.9 0.01 3.4E-07 48.2 5.1 24 47-70 99-122 (443)
314 2ihy_A ABC transporter, ATP-bi 95.9 0.0045 1.5E-07 47.2 2.9 26 49-74 48-73 (279)
315 2qi9_C Vitamin B12 import ATP- 95.9 0.0046 1.6E-07 46.3 2.9 25 49-73 27-51 (249)
316 2bov_A RAla, RAS-related prote 95.9 0.027 9.1E-07 39.7 6.8 26 47-72 13-38 (206)
317 2erx_A GTP-binding protein DI- 95.9 0.0058 2E-07 41.6 3.2 24 49-72 4-27 (172)
318 1nij_A Hypothetical protein YJ 95.9 0.0059 2E-07 47.2 3.5 26 47-72 3-28 (318)
319 3pqc_A Probable GTP-binding pr 95.8 0.0065 2.2E-07 42.4 3.5 26 47-72 22-47 (195)
320 2nq2_C Hypothetical ABC transp 95.8 0.0047 1.6E-07 46.3 2.9 24 49-72 32-55 (253)
321 2v9p_A Replication protein E1; 95.8 0.0054 1.9E-07 47.4 3.2 24 48-71 126-149 (305)
322 1cp2_A CP2, nitrogenase iron p 95.8 0.006 2E-07 45.5 3.4 23 49-71 2-24 (269)
323 1ek0_A Protein (GTP-binding pr 95.8 0.0056 1.9E-07 41.6 3.0 23 50-72 5-27 (170)
324 1c1y_A RAS-related protein RAP 95.8 0.0056 1.9E-07 41.6 3.0 23 50-72 5-27 (167)
325 1ky3_A GTP-binding protein YPT 95.8 0.0077 2.6E-07 41.5 3.8 26 47-72 7-32 (182)
326 3foz_A TRNA delta(2)-isopenten 95.8 0.0054 1.9E-07 47.6 3.2 26 48-73 10-35 (316)
327 2a9k_A RAS-related protein RAL 95.8 0.028 9.5E-07 38.7 6.7 25 48-72 18-42 (187)
328 2fn4_A P23, RAS-related protei 95.8 0.0082 2.8E-07 41.3 3.9 26 47-72 8-33 (181)
329 2xxa_A Signal recognition part 95.8 0.0066 2.3E-07 49.1 3.8 25 46-70 98-122 (433)
330 2bme_A RAB4A, RAS-related prot 95.8 0.026 9E-07 39.0 6.5 25 48-72 10-34 (186)
331 1r8s_A ADP-ribosylation factor 95.8 0.026 9E-07 38.1 6.4 21 51-71 3-23 (164)
332 1g5t_A COB(I)alamin adenosyltr 95.8 0.01 3.4E-07 43.0 4.3 40 76-115 122-164 (196)
333 2dr3_A UPF0273 protein PH0284; 95.8 0.0053 1.8E-07 44.8 3.0 22 49-70 24-45 (247)
334 1z08_A RAS-related protein RAB 95.8 0.0059 2E-07 41.6 3.0 25 48-72 6-30 (170)
335 3sop_A Neuronal-specific septi 95.8 0.0055 1.9E-07 46.4 3.0 22 50-71 4-25 (270)
336 2hxs_A RAB-26, RAS-related pro 95.8 0.01 3.5E-07 40.8 4.2 25 48-72 6-30 (178)
337 4dsu_A GTPase KRAS, isoform 2B 95.8 0.012 4.1E-07 40.8 4.6 24 49-72 5-28 (189)
338 2gj8_A MNME, tRNA modification 95.8 0.0082 2.8E-07 41.7 3.7 24 49-72 5-28 (172)
339 2x77_A ADP-ribosylation factor 95.8 0.045 1.5E-06 38.1 7.6 24 48-71 22-45 (189)
340 2cxx_A Probable GTP-binding pr 95.7 0.0065 2.2E-07 42.3 3.1 23 50-72 3-25 (190)
341 2yhs_A FTSY, cell division pro 95.7 0.0059 2E-07 50.3 3.3 26 47-72 292-317 (503)
342 2axn_A 6-phosphofructo-2-kinas 95.7 0.0065 2.2E-07 50.3 3.5 24 48-71 35-58 (520)
343 3t1o_A Gliding protein MGLA; G 95.7 0.0068 2.3E-07 42.3 3.2 24 48-71 14-37 (198)
344 1svm_A Large T antigen; AAA+ f 95.7 0.006 2E-07 48.5 3.1 26 47-72 168-193 (377)
345 3gj0_A GTP-binding nuclear pro 95.7 0.0079 2.7E-07 43.3 3.5 21 48-68 15-35 (221)
346 4bas_A ADP-ribosylation factor 95.7 0.0081 2.8E-07 42.2 3.5 26 46-71 15-40 (199)
347 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.034 1.2E-06 38.3 6.7 25 48-72 5-29 (186)
348 1ls1_A Signal recognition part 95.7 0.0071 2.4E-07 46.3 3.4 26 47-72 97-122 (295)
349 1r2q_A RAS-related protein RAB 95.7 0.0069 2.4E-07 41.2 3.0 24 48-71 6-29 (170)
350 1zbd_A Rabphilin-3A; G protein 95.7 0.036 1.2E-06 39.1 6.9 25 48-72 8-32 (203)
351 2afh_E Nitrogenase iron protei 95.7 0.0074 2.5E-07 45.6 3.4 24 48-71 2-25 (289)
352 3ihw_A Centg3; RAS, centaurin, 95.7 0.0069 2.4E-07 42.6 3.0 25 48-72 20-44 (184)
353 1g16_A RAS-related protein SEC 95.7 0.0098 3.3E-07 40.5 3.8 24 49-72 4-27 (170)
354 3kl4_A SRP54, signal recogniti 95.7 0.012 4.2E-07 47.5 4.8 46 47-94 96-144 (433)
355 2pjz_A Hypothetical protein ST 95.6 0.0063 2.2E-07 45.9 2.9 24 49-72 31-54 (263)
356 2iwr_A Centaurin gamma 1; ANK 95.6 0.0059 2E-07 42.2 2.6 25 48-72 7-31 (178)
357 3tqf_A HPR(Ser) kinase; transf 95.6 0.013 4.4E-07 41.8 4.2 32 49-83 17-48 (181)
358 2ew1_A RAS-related protein RAB 95.6 0.035 1.2E-06 39.6 6.7 24 48-71 26-49 (201)
359 3kjh_A CO dehydrogenase/acetyl 95.6 0.0065 2.2E-07 44.4 2.8 22 51-72 3-24 (254)
360 1lw7_A Transcriptional regulat 95.6 0.0072 2.5E-07 47.5 3.2 26 48-73 170-195 (365)
361 2j37_W Signal recognition part 95.6 0.028 9.4E-07 46.4 6.8 39 46-84 99-140 (504)
362 1m2o_B GTP-binding protein SAR 95.6 0.0076 2.6E-07 42.5 3.0 23 49-71 24-46 (190)
363 1pzn_A RAD51, DNA repair and r 95.6 0.0082 2.8E-07 47.1 3.4 26 47-72 130-155 (349)
364 2y8e_A RAB-protein 6, GH09086P 95.6 0.0079 2.7E-07 41.3 3.0 23 49-71 15-37 (179)
365 3fvq_A Fe(3+) IONS import ATP- 95.6 0.0076 2.6E-07 47.6 3.2 24 49-72 31-54 (359)
366 3bc1_A RAS-related protein RAB 95.6 0.008 2.7E-07 41.8 3.0 24 48-71 11-34 (195)
367 3kta_A Chromosome segregation 95.6 0.0086 2.9E-07 41.9 3.2 21 50-70 28-48 (182)
368 2v3c_C SRP54, signal recogniti 95.6 0.0051 1.7E-07 49.8 2.2 26 47-72 98-123 (432)
369 2efe_B Small GTP-binding prote 95.5 0.0082 2.8E-07 41.4 3.0 25 48-72 12-36 (181)
370 3c5c_A RAS-like protein 12; GD 95.5 0.011 3.9E-07 41.4 3.8 25 48-72 21-45 (187)
371 2qu8_A Putative nucleolar GTP- 95.5 0.01 3.6E-07 43.0 3.7 26 47-72 28-53 (228)
372 2oil_A CATX-8, RAS-related pro 95.5 0.0082 2.8E-07 42.1 3.0 25 48-72 25-49 (193)
373 3t5g_A GTP-binding protein RHE 95.5 0.0097 3.3E-07 41.2 3.3 25 48-72 6-30 (181)
374 2gf0_A GTP-binding protein DI- 95.5 0.031 1.1E-06 39.1 6.0 24 48-71 8-31 (199)
375 3lxx_A GTPase IMAP family memb 95.5 0.012 4.2E-07 43.1 4.0 27 47-73 28-54 (239)
376 1bif_A 6-phosphofructo-2-kinas 95.5 0.0079 2.7E-07 48.9 3.2 24 48-71 39-62 (469)
377 2h92_A Cytidylate kinase; ross 95.5 0.0067 2.3E-07 43.8 2.5 24 49-72 4-27 (219)
378 2bbs_A Cystic fibrosis transme 95.5 0.0076 2.6E-07 46.2 2.9 25 49-73 65-89 (290)
379 2g6b_A RAS-related protein RAB 95.5 0.0089 3.1E-07 41.2 3.0 25 48-72 10-34 (180)
380 1vg8_A RAS-related protein RAB 95.5 0.012 4.1E-07 41.6 3.8 26 47-72 7-32 (207)
381 2www_A Methylmalonic aciduria 95.5 0.011 3.6E-07 46.4 3.7 24 47-70 73-96 (349)
382 2hup_A RAS-related protein RAB 95.5 0.05 1.7E-06 38.5 7.1 26 47-72 28-53 (201)
383 1f6b_A SAR1; gtpases, N-termin 95.5 0.0094 3.2E-07 42.4 3.2 23 49-71 26-48 (198)
384 1z47_A CYSA, putative ABC-tran 95.5 0.0089 3E-07 47.2 3.2 25 49-73 42-66 (355)
385 2atv_A RERG, RAS-like estrogen 95.5 0.0087 3E-07 42.2 2.9 25 48-72 28-52 (196)
386 2fh5_B SR-beta, signal recogni 95.4 0.0094 3.2E-07 42.6 3.1 25 48-72 7-31 (214)
387 3tui_C Methionine import ATP-b 95.4 0.0092 3.1E-07 47.3 3.2 25 49-73 55-79 (366)
388 1g8f_A Sulfate adenylyltransfe 95.4 0.0097 3.3E-07 49.2 3.4 28 47-74 394-421 (511)
389 3cr8_A Sulfate adenylyltranfer 95.4 0.0073 2.5E-07 50.4 2.7 25 48-72 369-393 (552)
390 3eph_A TRNA isopentenyltransfe 95.4 0.0087 3E-07 48.0 3.0 25 49-73 3-27 (409)
391 1pui_A ENGB, probable GTP-bind 95.4 0.0054 1.8E-07 43.7 1.6 25 48-72 26-50 (210)
392 2yyz_A Sugar ABC transporter, 95.4 0.0097 3.3E-07 47.0 3.2 25 49-73 30-54 (359)
393 2q3h_A RAS homolog gene family 95.4 0.01 3.4E-07 41.9 3.0 25 48-72 20-44 (201)
394 3rlf_A Maltose/maltodextrin im 95.4 0.0097 3.3E-07 47.4 3.2 25 49-73 30-54 (381)
395 2r8r_A Sensor protein; KDPD, P 95.4 0.013 4.4E-07 43.4 3.7 23 49-71 7-29 (228)
396 1xx6_A Thymidine kinase; NESG, 95.4 0.021 7.3E-07 41.0 4.8 25 48-72 8-32 (191)
397 3cbq_A GTP-binding protein REM 95.4 0.01 3.5E-07 42.1 3.0 23 47-69 22-44 (195)
398 1g29_1 MALK, maltose transport 95.4 0.01 3.4E-07 47.1 3.2 23 49-71 30-52 (372)
399 3clv_A RAB5 protein, putative; 95.4 0.015 5E-07 40.6 3.8 24 48-71 7-30 (208)
400 1ega_A Protein (GTP-binding pr 95.4 0.012 4E-07 45.2 3.5 26 47-72 7-32 (301)
401 2it1_A 362AA long hypothetical 95.3 0.01 3.4E-07 47.0 3.2 25 49-73 30-54 (362)
402 2il1_A RAB12; G-protein, GDP, 95.3 0.026 9E-07 39.6 5.2 25 48-72 26-50 (192)
403 2cjw_A GTP-binding protein GEM 95.3 0.01 3.5E-07 42.0 3.0 23 48-70 6-28 (192)
404 1j8m_F SRP54, signal recogniti 95.3 0.0094 3.2E-07 45.8 2.9 25 48-72 98-122 (297)
405 2a5j_A RAS-related protein RAB 95.3 0.011 3.7E-07 41.5 3.0 25 48-72 21-45 (191)
406 3gmt_A Adenylate kinase; ssgci 95.3 0.0095 3.3E-07 44.2 2.8 26 48-73 8-33 (230)
407 1v43_A Sugar-binding transport 95.3 0.01 3.6E-07 47.0 3.2 25 49-73 38-62 (372)
408 1ksh_A ARF-like protein 2; sma 95.3 0.014 4.7E-07 40.6 3.5 25 48-72 18-42 (186)
409 3d31_A Sulfate/molybdate ABC t 95.3 0.0087 3E-07 47.0 2.7 25 49-73 27-51 (348)
410 2o52_A RAS-related protein RAB 95.3 0.011 3.7E-07 42.0 3.0 25 48-72 25-49 (200)
411 1x6v_B Bifunctional 3'-phospho 95.3 0.012 4E-07 49.8 3.6 26 47-72 51-76 (630)
412 2qm8_A GTPase/ATPase; G protei 95.3 0.013 4.5E-07 45.7 3.6 24 47-70 54-77 (337)
413 3iev_A GTP-binding protein ERA 95.3 0.015 5E-07 44.7 3.9 28 45-72 7-34 (308)
414 1m8p_A Sulfate adenylyltransfe 95.3 0.012 4E-07 49.3 3.5 27 47-73 395-421 (573)
415 4edh_A DTMP kinase, thymidylat 95.3 0.012 3.9E-07 43.0 3.1 25 48-72 6-30 (213)
416 3k53_A Ferrous iron transport 95.2 0.015 5.1E-07 43.6 3.8 25 48-72 3-27 (271)
417 3ld9_A DTMP kinase, thymidylat 95.2 0.015 5E-07 42.9 3.6 28 47-74 20-47 (223)
418 2bcg_Y Protein YP2, GTP-bindin 95.2 0.012 4E-07 41.8 3.0 25 48-72 8-32 (206)
419 1oxx_K GLCV, glucose, ABC tran 95.2 0.008 2.7E-07 47.3 2.3 24 49-72 32-55 (353)
420 2p67_A LAO/AO transport system 95.2 0.014 4.7E-07 45.6 3.6 24 47-70 55-78 (341)
421 3hr8_A Protein RECA; alpha and 95.2 0.013 4.4E-07 46.2 3.4 36 32-71 48-84 (356)
422 1z06_A RAS-related protein RAB 95.2 0.017 5.8E-07 40.4 3.8 25 48-72 20-44 (189)
423 2j1l_A RHO-related GTP-binding 95.2 0.012 4E-07 42.3 3.0 24 48-71 34-57 (214)
424 2p5s_A RAS and EF-hand domain 95.2 0.015 5.1E-07 41.1 3.5 25 48-72 28-52 (199)
425 1g41_A Heat shock protein HSLU 95.2 0.016 5.4E-07 47.1 3.9 33 48-81 50-82 (444)
426 4dhe_A Probable GTP-binding pr 95.1 0.0099 3.4E-07 42.7 2.4 26 47-72 28-53 (223)
427 2qnr_A Septin-2, protein NEDD5 95.1 0.011 3.6E-07 45.4 2.7 21 51-71 21-41 (301)
428 2zts_A Putative uncharacterize 95.1 0.013 4.3E-07 42.8 3.0 22 48-69 30-51 (251)
429 3o47_A ADP-ribosylation factor 95.1 0.078 2.7E-06 41.0 7.6 23 50-72 167-189 (329)
430 2gza_A Type IV secretion syste 95.1 0.012 4.2E-07 46.3 3.0 35 49-83 176-211 (361)
431 4f4c_A Multidrug resistance pr 95.1 0.039 1.3E-06 50.5 6.6 25 49-73 445-469 (1321)
432 3cph_A RAS-related protein SEC 95.1 0.013 4.6E-07 41.5 3.0 25 48-72 20-44 (213)
433 3gd7_A Fusion complex of cysti 95.1 0.013 4.5E-07 46.8 3.2 25 49-73 48-72 (390)
434 2ewv_A Twitching motility prot 95.1 0.014 4.7E-07 46.2 3.3 23 48-70 136-158 (372)
435 2xtp_A GTPase IMAP family memb 95.1 0.018 6.1E-07 42.7 3.8 26 47-72 21-46 (260)
436 3fdi_A Uncharacterized protein 95.1 0.014 4.9E-07 42.0 3.1 28 48-75 6-33 (201)
437 3g5u_A MCG1178, multidrug resi 95.1 0.056 1.9E-06 49.3 7.6 25 49-73 417-441 (1284)
438 2gco_A H9, RHO-related GTP-bin 95.1 0.014 4.8E-07 41.4 3.0 25 48-72 25-49 (201)
439 2zr9_A Protein RECA, recombina 95.1 0.012 4.1E-07 46.2 2.8 23 48-70 61-83 (349)
440 2f7s_A C25KG, RAS-related prot 95.1 0.015 5.2E-07 41.6 3.2 25 48-72 25-49 (217)
441 2h57_A ADP-ribosylation factor 95.0 0.0097 3.3E-07 41.7 2.0 25 48-72 21-45 (190)
442 1wf3_A GTP-binding protein; GT 95.0 0.021 7.2E-07 43.8 4.0 26 47-72 6-31 (301)
443 2fu5_C RAS-related protein RAB 95.0 0.0081 2.8E-07 41.7 1.5 25 48-72 8-32 (183)
444 3v9p_A DTMP kinase, thymidylat 94.9 0.012 4.3E-07 43.4 2.5 25 48-72 25-49 (227)
445 2ffh_A Protein (FFH); SRP54, s 94.9 0.018 6E-07 46.5 3.5 26 47-72 97-122 (425)
446 4dzz_A Plasmid partitioning pr 94.9 0.016 5.5E-07 41.1 3.0 23 49-71 2-25 (206)
447 1h65_A Chloroplast outer envel 94.9 0.036 1.2E-06 41.5 5.0 26 47-72 38-63 (270)
448 3thx_A DNA mismatch repair pro 94.9 0.069 2.4E-06 47.2 7.5 21 48-68 662-682 (934)
449 2wkq_A NPH1-1, RAS-related C3 94.9 0.034 1.1E-06 42.3 4.8 25 48-72 155-179 (332)
450 3g5u_A MCG1178, multidrug resi 94.9 0.05 1.7E-06 49.6 6.6 25 49-73 1060-1084(1284)
451 3ea0_A ATPase, para family; al 94.9 0.021 7.1E-07 41.7 3.5 25 47-71 3-28 (245)
452 3lda_A DNA repair protein RAD5 94.8 0.017 5.8E-07 46.2 3.2 22 48-69 178-199 (400)
453 2obl_A ESCN; ATPase, hydrolase 94.8 0.016 5.6E-07 45.4 3.0 35 48-82 71-106 (347)
454 2npi_A Protein CLP1; CLP1-PCF1 94.8 0.013 4.4E-07 47.8 2.5 24 49-72 139-162 (460)
455 3def_A T7I23.11 protein; chlor 94.8 0.039 1.3E-06 41.1 5.0 26 47-72 35-60 (262)
456 3lv8_A DTMP kinase, thymidylat 94.8 0.018 6.1E-07 42.8 3.0 25 48-72 27-51 (236)
457 3fkq_A NTRC-like two-domain pr 94.8 0.024 8.2E-07 44.6 3.9 27 45-71 140-167 (373)
458 4hlc_A DTMP kinase, thymidylat 94.8 0.021 7E-07 41.4 3.3 24 49-72 3-26 (205)
459 2rcn_A Probable GTPase ENGC; Y 94.8 0.021 7.3E-07 45.0 3.6 24 50-73 217-240 (358)
460 4dcu_A GTP-binding protein ENG 94.8 0.057 1.9E-06 43.6 6.2 24 48-71 23-46 (456)
461 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.012 4.2E-07 45.7 2.1 25 49-73 172-196 (330)
462 3k9g_A PF-32 protein; ssgcid, 94.7 0.02 6.7E-07 42.6 3.1 26 47-72 26-52 (267)
463 2yv5_A YJEQ protein; hydrolase 94.7 0.023 7.8E-07 43.6 3.6 23 49-72 166-188 (302)
464 1u94_A RECA protein, recombina 94.7 0.017 5.8E-07 45.5 2.9 24 48-71 63-86 (356)
465 3l0i_B RAS-related protein RAB 94.7 0.0093 3.2E-07 42.2 1.2 26 47-72 32-57 (199)
466 1v5w_A DMC1, meiotic recombina 94.7 0.022 7.5E-07 44.5 3.4 25 47-71 121-145 (343)
467 2i1q_A DNA repair and recombin 94.7 0.022 7.6E-07 43.7 3.4 23 48-70 98-120 (322)
468 1p9r_A General secretion pathw 94.7 0.033 1.1E-06 44.8 4.5 37 48-84 167-206 (418)
469 2qag_B Septin-6, protein NEDD5 94.7 0.018 6.2E-07 46.5 3.0 23 49-71 43-65 (427)
470 3ch4_B Pmkase, phosphomevalona 94.7 0.027 9.2E-07 40.9 3.6 24 47-70 10-33 (202)
471 3cpj_B GTP-binding protein YPT 94.7 0.02 7E-07 41.3 3.0 25 48-72 13-37 (223)
472 3bh0_A DNAB-like replicative h 94.7 0.021 7.1E-07 44.0 3.2 24 48-71 68-91 (315)
473 1c9k_A COBU, adenosylcobinamid 94.7 0.019 6.5E-07 41.0 2.7 21 51-71 2-22 (180)
474 3tmk_A Thymidylate kinase; pho 94.6 0.017 5.7E-07 42.4 2.4 26 49-74 6-31 (216)
475 1tq4_A IIGP1, interferon-induc 94.6 0.025 8.5E-07 45.5 3.6 24 48-71 69-92 (413)
476 2z43_A DNA repair and recombin 94.6 0.02 6.7E-07 44.3 2.8 24 48-71 107-130 (324)
477 3io3_A DEHA2D07832P; chaperone 94.5 0.024 8.3E-07 44.5 3.3 24 47-70 17-40 (348)
478 4tmk_A Protein (thymidylate ki 94.5 0.023 7.9E-07 41.4 3.0 24 49-72 4-27 (213)
479 3iby_A Ferrous iron transport 94.5 0.025 8.5E-07 42.3 3.2 24 49-72 2-25 (256)
480 3b1v_A Ferrous iron uptake tra 94.5 0.028 9.6E-07 42.5 3.6 24 48-71 3-26 (272)
481 1jwy_B Dynamin A GTPase domain 94.5 0.049 1.7E-06 41.3 5.0 27 46-72 22-48 (315)
482 1u0l_A Probable GTPase ENGC; p 94.5 0.024 8.2E-07 43.4 3.1 25 49-73 170-194 (301)
483 3cwq_A Para family chromosome 94.5 0.024 8.2E-07 40.9 3.0 20 50-69 2-22 (209)
484 1yqt_A RNAse L inhibitor; ATP- 94.5 0.027 9.2E-07 46.7 3.6 24 49-72 313-336 (538)
485 3a1s_A Iron(II) transport prot 94.4 0.032 1.1E-06 41.7 3.7 25 48-72 5-29 (258)
486 1yqt_A RNAse L inhibitor; ATP- 94.4 0.023 7.9E-07 47.1 3.2 22 49-70 48-69 (538)
487 2qtf_A Protein HFLX, GTP-bindi 94.4 0.024 8E-07 44.8 3.1 27 47-73 178-204 (364)
488 1zcb_A G alpha I/13; GTP-bindi 94.4 0.029 9.8E-07 44.3 3.6 23 46-68 31-53 (362)
489 3ozx_A RNAse L inhibitor; ATP 94.4 0.025 8.5E-07 47.0 3.3 24 49-72 295-318 (538)
490 3t5d_A Septin-7; GTP-binding p 94.4 0.022 7.4E-07 42.8 2.7 22 49-70 9-30 (274)
491 2dpy_A FLII, flagellum-specifi 94.4 0.023 8E-07 46.0 3.0 36 48-83 157-193 (438)
492 2qag_C Septin-7; cell cycle, c 94.4 0.024 8.1E-07 45.7 3.0 22 51-72 34-55 (418)
493 3q9l_A Septum site-determining 94.3 0.032 1.1E-06 41.0 3.4 23 49-71 3-26 (260)
494 3euj_A Chromosome partition pr 94.3 0.027 9.2E-07 46.2 3.2 24 49-72 30-53 (483)
495 3hdt_A Putative kinase; struct 94.3 0.028 9.5E-07 41.3 3.0 28 48-75 14-41 (223)
496 4f4c_A Multidrug resistance pr 94.3 0.086 2.9E-06 48.2 6.7 25 49-73 1106-1130(1321)
497 2j9r_A Thymidine kinase; TK1, 94.3 0.084 2.9E-06 38.6 5.5 63 48-113 28-137 (214)
498 3ozx_A RNAse L inhibitor; ATP 94.2 0.032 1.1E-06 46.3 3.5 25 47-71 24-48 (538)
499 2yc2_C IFT27, small RAB-relate 94.2 0.01 3.6E-07 41.8 0.5 23 49-71 21-43 (208)
500 2e87_A Hypothetical protein PH 94.2 0.029 9.8E-07 43.9 3.0 26 47-72 166-191 (357)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.89 E-value=2.2e-23 Score=173.93 Aligned_cols=119 Identities=22% Similarity=0.214 Sum_probs=92.3
Q ss_pred CCCCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHc--cCCc-------------------
Q 039127 19 VPSVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYN--DKTV------------------- 74 (162)
Q Consensus 19 ~~~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~--~~~~------------------- 74 (162)
.|..+..|||+. ++.++|.... +...++|+|+||||+||||||+++|+ +.+.
T Consensus 124 ~p~~~~~~GR~~~~~~l~~~L~~~~----~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (549)
T 2a5y_B 124 VPKQMTCYIREYHVDRVIKKLDEMC----DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 199 (549)
T ss_dssp CBCCCCSCCCHHHHHHHHHHHHHHT----TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred CCCCCccCCchHHHHHHHHHHhccc----CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCC
Confidence 344445359999 7888886542 24579999999999999999999996 1110
Q ss_pred --------------------------------------------eEEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEe
Q 039127 75 --------------------------------------------NFNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVT 110 (162)
Q Consensus 75 --------------------------------------------~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiT 110 (162)
+|||||||+| +.+++ .+ +. .+||+||||
T Consensus 200 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~--~~~~~-~~----~~-~~gs~ilvT 271 (549)
T 2a5y_B 200 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV--QEETI-RW----AQ-ELRLRCLVT 271 (549)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC--CHHHH-HH----HH-HTTCEEEEE
T ss_pred HHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCC--Cchhh-cc----cc-cCCCEEEEE
Confidence 1999999999 66544 21 21 279999999
Q ss_pred cCChhhHhhhCCC-CeeeCCCCCHHHHHHHHhhCCCCCCC
Q 039127 111 TRNQGVASIMGTM-PAYELKKLVNDNCLLIFSQHPSGTRE 149 (162)
Q Consensus 111 TR~~~v~~~~~~~-~~~~l~~L~~~~~~~lf~~~af~~~~ 149 (162)
||++.++..++.. .+|+|++|+.++||+||.++||+...
T Consensus 272 TR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 311 (549)
T 2a5y_B 272 TRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV 311 (549)
T ss_dssp ESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-
T ss_pred cCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC
Confidence 9999999877633 57999999999999999999997654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.83 E-value=4.4e-21 Score=170.65 Aligned_cols=113 Identities=21% Similarity=0.304 Sum_probs=90.4
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc---e-------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV---N------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~---~------------------- 75 (162)
..+.|+||++ ++.++|.... ...++++|+||||+||||||+++|++.+. .
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~-----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN-----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT-----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc-----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 4467999999 6777776543 45789999999999999999999887311 0
Q ss_pred -----------------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh
Q 039127 76 -----------------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ 114 (162)
Q Consensus 76 -----------------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~ 114 (162)
|||||||+| +...|..+ .+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~--~~~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC--CHHHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC--CHHHHHhh-------cCCCEEEEEcCCH
Confidence 899999999 66655442 5789999999999
Q ss_pred hhHhh-hCCCCeeeCCC-CCHHHHHHHHhhCCCCC
Q 039127 115 GVASI-MGTMPAYELKK-LVNDNCLLIFSQHPSGT 147 (162)
Q Consensus 115 ~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~af~~ 147 (162)
.++.. ++....+++.+ |+.+++++||...++..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~ 302 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK 302 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC
Confidence 99854 45556799996 99999999999887543
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.77 E-value=3e-19 Score=156.61 Aligned_cols=105 Identities=20% Similarity=0.189 Sum_probs=83.4
Q ss_pred ceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC---------------------------
Q 039127 24 LWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT--------------------------- 73 (162)
Q Consensus 24 ~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~--------------------------- 73 (162)
..+||+. ++.++|...+ ..++++|+||||+||||||+.+|++.+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHH
Confidence 3499998 7777777533 368999999999999999999985320
Q ss_pred -----------------------------------------ceEEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecC
Q 039127 74 -----------------------------------------VNFNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTR 112 (162)
Q Consensus 74 -----------------------------------------~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR 112 (162)
.++||||||+| +.+.|+.+ + +||+||||||
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVw--d~eqLe~f----~---pGSRILVTTR 273 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAF----N---LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCC--CHHHHHHH----H---SSCCEEEECS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcC--hHHHHHhh----C---CCeEEEEecc
Confidence 01899999999 77777764 2 6899999999
Q ss_pred ChhhHhhhCCCCeeeCC------CCCHHHHHHHHhhC
Q 039127 113 NQGVASIMGTMPAYELK------KLVNDNCLLIFSQH 143 (162)
Q Consensus 113 ~~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~ 143 (162)
++.++..+.....|+++ +|+.+|||+||++.
T Consensus 274 d~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~ 310 (1221)
T 1vt4_I 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310 (1221)
T ss_dssp CSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH
T ss_pred ChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH
Confidence 99988644433346677 99999999999987
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=145.64 Aligned_cols=112 Identities=23% Similarity=0.317 Sum_probs=84.6
Q ss_pred CCCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc--------e-------------
Q 039127 20 PSVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV--------N------------- 75 (162)
Q Consensus 20 ~~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~--------~------------- 75 (162)
+..+.||||+. .+.+.|.... ...++++|+|+||+||||||..++++... .
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~ 195 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLK-----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGL 195 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTST-----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhccc-----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHH
Confidence 34578999999 5666665432 35789999999999999999999865311 0
Q ss_pred ------------------------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC
Q 039127 76 ------------------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN 113 (162)
Q Consensus 76 ------------------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~ 113 (162)
+||||||+| +...+. .+ .+|++||+|||+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~--~~~~l~----~l---~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW--DSWVLK----AF---DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC--CHHHHH----TT---CSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC--CHHHHH----Hh---cCCCeEEEECCC
Confidence 799999999 554433 22 568999999999
Q ss_pred hhhHhhhCCCCeeeC---CCCCHHHHHHHHhhCCCC
Q 039127 114 QGVASIMGTMPAYEL---KKLVNDNCLLIFSQHPSG 146 (162)
Q Consensus 114 ~~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~af~ 146 (162)
..++..+.. ..+++ ++|+.+++++||...++.
T Consensus 267 ~~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 267 KSVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp GGGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred cHHHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCC
Confidence 998765442 33444 589999999999998765
No 5
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.28 E-value=2.8e-11 Score=88.90 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=84.6
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc------------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV------------------------ 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------------------------ 74 (162)
...++||+. .+..++.... ....+.|+|.+|+|||+||+.+++....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV 95 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC------CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCS
T ss_pred HHHHhCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCc
Confidence 367999998 5555554433 2347889999999999999988653210
Q ss_pred -------------------------------eEEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChh-hHh-hhC
Q 039127 75 -------------------------------NFNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQG-VAS-IMG 121 (162)
Q Consensus 75 -------------------------------~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~-v~~-~~~ 121 (162)
..++|+||++..+...+..+...+.....+..+|+||+... +.. ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~ 175 (250)
T 1njg_A 96 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 175 (250)
T ss_dssp SEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred ceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHH
Confidence 06999999986677788888877766556778888887643 211 223
Q ss_pred CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 122 TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 122 ~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
....+++.+++.++..+++...+
T Consensus 176 r~~~i~l~~l~~~e~~~~l~~~~ 198 (250)
T 1njg_A 176 RCLQFHLKALDVEQIRHQLEHIL 198 (250)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhccCCCCCHHHHHHHHHHHH
Confidence 33479999999999999998654
No 6
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.23 E-value=7.4e-11 Score=85.71 Aligned_cols=117 Identities=14% Similarity=0.127 Sum_probs=83.5
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC-----ce-----------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT-----VN----------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~-----~~----------------- 75 (162)
....++|++. .+.+++.... .+.+.|+|.+|+|||+||+.+++... ..
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKN-------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC-------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCC-------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHH
Confidence 3467899998 5555554433 22388999999999999998876420 00
Q ss_pred ----------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChhh-H-hhhCCCCeeeCCCCCHHHHH
Q 039127 76 ----------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQGV-A-SIMGTMPAYELKKLVNDNCL 137 (162)
Q Consensus 76 ----------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v-~-~~~~~~~~~~l~~L~~~~~~ 137 (162)
.++++||++......++.+...+.....+..+|+||+.... . ........+++.+++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~ 167 (226)
T 2chg_A 88 KIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMK 167 (226)
T ss_dssp HHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHH
Confidence 68999999866667777777777665667788888876532 1 12222337899999999999
Q ss_pred HHHhhCC
Q 039127 138 LIFSQHP 144 (162)
Q Consensus 138 ~lf~~~a 144 (162)
.++.+.+
T Consensus 168 ~~l~~~~ 174 (226)
T 2chg_A 168 KRLLEIC 174 (226)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998654
No 7
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=3e-09 Score=81.93 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=81.8
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC-------------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------------------------- 73 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------------------------- 73 (162)
..+++|++. .+.+++.... .+.+.++|++|+|||++|+.+++...
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 92 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN-------MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQ 92 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC-------CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC-------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHH
Confidence 467999998 5555554433 22388999999999999988765420
Q ss_pred -------------c-eEEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChh-hH-hhhCCCCeeeCCCCCHHHHH
Q 039127 74 -------------V-NFNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQG-VA-SIMGTMPAYELKKLVNDNCL 137 (162)
Q Consensus 74 -------------~-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~-v~-~~~~~~~~~~l~~L~~~~~~ 137 (162)
. ..++|+||++..+...++.|...+.....++.+|++|.... +. ........+++.+++.++..
T Consensus 93 ~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~ 172 (323)
T 1sxj_B 93 IKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVL 172 (323)
T ss_dssp HHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHH
Confidence 0 16899999986666777777777766556777888776543 21 22233347999999999999
Q ss_pred HHHhhCC
Q 039127 138 LIFSQHP 144 (162)
Q Consensus 138 ~lf~~~a 144 (162)
.++...+
T Consensus 173 ~~l~~~~ 179 (323)
T 1sxj_B 173 KRLLQII 179 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998653
No 8
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.96 E-value=6.2e-09 Score=80.83 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=74.1
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC-------------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK------------------------- 72 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~------------------------- 72 (162)
....|+||+. .+.+++... +++.|+|++|+|||+|++.+++..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~---------~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY---------PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC---------SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC---------CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHH
Confidence 4568999999 444444321 488999999999999998764320
Q ss_pred ------------------------C-----c-----------------eEEEEEeCCCCCC-------hhhHHHHHhhcc
Q 039127 73 ------------------------T-----V-----------------NFNFALDDTWKEK-------YVDWTNMRDLFA 99 (162)
Q Consensus 73 ------------------------~-----~-----------------~~LlVlDdv~~~~-------~~~~~~l~~~l~ 99 (162)
. . ..++|+||++..+ ...+..+...+.
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 0 0 1789999998422 122333433333
Q ss_pred ccCCCcEEEEecCChhh-Hhh----------hCC-CCeeeCCCCCHHHHHHHHhhC
Q 039127 100 AVASRSKVIVTTRNQGV-ASI----------MGT-MPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 100 ~~~~gs~iiiTTR~~~v-~~~----------~~~-~~~~~l~~L~~~~~~~lf~~~ 143 (162)
..++.++|+|++.... ... .+. ...+++.+|+.+++.+++...
T Consensus 161 -~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~ 215 (350)
T 2qen_A 161 -SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRG 215 (350)
T ss_dssp -HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHH
T ss_pred -hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHH
Confidence 2346789999887643 221 111 236899999999999999763
No 9
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=4.2e-09 Score=81.22 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=83.0
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc-----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV----------------------- 74 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~----------------------- 74 (162)
...+++|++. .+.+++.... .+.+.++|.+|+|||++|+.+++....
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGS-------MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIRE 95 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTC-------CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCC-------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHH
Confidence 3467999998 5555554433 334889999999999999988765200
Q ss_pred ---------------eEEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChhh-Hh-hhCCCCeeeCCCCCHHHHH
Q 039127 75 ---------------NFNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQGV-AS-IMGTMPAYELKKLVNDNCL 137 (162)
Q Consensus 75 ---------------~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v-~~-~~~~~~~~~l~~L~~~~~~ 137 (162)
..++++|+++..+...++.+...+.....+.++|+||....- .. .......+++.+++.++..
T Consensus 96 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~ 175 (327)
T 1iqp_A 96 KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIA 175 (327)
T ss_dssp HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHH
T ss_pred HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHH
Confidence 058999999977777788888877766667788888866431 11 1112236899999999999
Q ss_pred HHHhhCC
Q 039127 138 LIFSQHP 144 (162)
Q Consensus 138 ~lf~~~a 144 (162)
.++...+
T Consensus 176 ~~l~~~~ 182 (327)
T 1iqp_A 176 KRLRYIA 182 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 10
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.94 E-value=8.1e-10 Score=87.95 Aligned_cols=117 Identities=14% Similarity=0.036 Sum_probs=71.9
Q ss_pred CceeeehH---HHHHHh-h---cCCCCCCCCCeEEEEE--EcCCCcchHHHHHHHHccCCc---------e---------
Q 039127 23 KLWLGREE---GTVELV-L---KDDSETIDGGFFVIPI--IGMGGSGNTTPALPVYNDKTV---------N--------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l-~---~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~~~~~~~~---------~--------- 75 (162)
..++||+. .+.+.+ . ... ......+.| +|++|+|||+||+.+++.... .
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~----~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGA----GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSS----CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCC----CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 67999998 454444 2 120 012345666 999999999999988754210 0
Q ss_pred ------------------------------------------EEEEEeCCCCC------ChhhHHHHHhhccccC-----
Q 039127 76 ------------------------------------------FNFALDDTWKE------KYVDWTNMRDLFAAVA----- 102 (162)
Q Consensus 76 ------------------------------------------~LlVlDdv~~~------~~~~~~~l~~~l~~~~----- 102 (162)
++|||||++.. +.+.+..+...+....
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 69999999832 1233444444443221
Q ss_pred CCcEEEEecCChhhHhh--------hCC-CCeeeCCCCCHHHHHHHHhhC
Q 039127 103 SRSKVIVTTRNQGVASI--------MGT-MPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 103 ~gs~iiiTTR~~~v~~~--------~~~-~~~~~l~~L~~~~~~~lf~~~ 143 (162)
....+|+||+...+... ... ...+++.+|+.++++++|...
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~ 227 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQR 227 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHH
Confidence 23347778876543211 111 123899999999999999643
No 11
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.91 E-value=5.6e-09 Score=81.19 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=42.6
Q ss_pred EEEEEeCCCCCC----hhhHHHHHhhccccCCCcEEEEecCChhhHh-h---------h-CC-CCeeeCCCCCHHHHHHH
Q 039127 76 FNFALDDTWKEK----YVDWTNMRDLFAAVASRSKVIVTTRNQGVAS-I---------M-GT-MPAYELKKLVNDNCLLI 139 (162)
Q Consensus 76 ~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~-~---------~-~~-~~~~~l~~L~~~~~~~l 139 (162)
.+|||||++..+ .+.+..+. .+.....+.++|+|++...... . . +. ...+++.+|+.+++.++
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~-~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALA-YAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHH-HHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred eEEEEECHHHhhccCchhHHHHHH-HHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 589999998422 22233333 3322234678999999865322 1 1 11 24689999999999999
Q ss_pred HhhC
Q 039127 140 FSQH 143 (162)
Q Consensus 140 f~~~ 143 (162)
+...
T Consensus 218 l~~~ 221 (357)
T 2fna_A 218 LRRG 221 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9863
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.89 E-value=4.7e-09 Score=82.48 Aligned_cols=118 Identities=13% Similarity=0.041 Sum_probs=73.6
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC------Cce------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK------TVN------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~------~~~------------------ 75 (162)
..++||+. .+.+++.... .......+.|+|++|+|||+||+.+++.. ...
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~---~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLY---REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGG---GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH---cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 68999999 4444443210 11235678899999999999999887532 100
Q ss_pred ---------------------------------EEEEEeCCCCCC----hhhHHHHHhhccc-cCCCcEEEEecCChhhH
Q 039127 76 ---------------------------------FNFALDDTWKEK----YVDWTNMRDLFAA-VASRSKVIVTTRNQGVA 117 (162)
Q Consensus 76 ---------------------------------~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iiiTTR~~~v~ 117 (162)
.+++||+++... ...+..+...+.. ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 689999987321 2334444444322 12344567777765432
Q ss_pred hhhC-----C--CCeeeCCCCCHHHHHHHHhhC
Q 039127 118 SIMG-----T--MPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 118 ~~~~-----~--~~~~~l~~L~~~~~~~lf~~~ 143 (162)
..+. . ...+++.+++.++..++|...
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~ 209 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKR 209 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHH
Confidence 2111 1 136999999999999999864
No 13
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.89 E-value=4.5e-09 Score=82.70 Aligned_cols=118 Identities=13% Similarity=0.049 Sum_probs=72.6
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC---------Cce---------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK---------TVN--------------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~---------~~~--------------- 75 (162)
..++||+. .+..++...- .....+.+.|+|++|+|||+||+.+++.. ...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~---~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL---RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT---SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH---cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 68999999 5555543211 11235678899999999999999887643 111
Q ss_pred ------------------------------------EEEEEeCCCCCChh--hHHHHHhhcccc-----CCCcEEEEecC
Q 039127 76 ------------------------------------FNFALDDTWKEKYV--DWTNMRDLFAAV-----ASRSKVIVTTR 112 (162)
Q Consensus 76 ------------------------------------~LlVlDdv~~~~~~--~~~~l~~~l~~~-----~~gs~iiiTTR 112 (162)
.+++||+++..... ..+.+...+... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 59999999832222 223333323211 33456777776
Q ss_pred ChhhH-----hhhCCC--CeeeCCCCCHHHHHHHHhhC
Q 039127 113 NQGVA-----SIMGTM--PAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 113 ~~~v~-----~~~~~~--~~~~l~~L~~~~~~~lf~~~ 143 (162)
..... ...... ..+++.+++.++...++...
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~ 213 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETR 213 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 65221 111111 36899999999999999866
No 14
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.85 E-value=5.4e-09 Score=74.05 Aligned_cols=111 Identities=12% Similarity=0.098 Sum_probs=69.0
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC----------ce------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT----------VN------------ 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~----------~~------------ 75 (162)
....++||++ .+.+.+.... ...+.|+|.+|+|||+||+.+++... ..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRT-------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG 92 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS-------SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTT
T ss_pred cccccccchHHHHHHHHHHhcCC-------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhcc
Confidence 3467999998 5666555432 34577999999999999998876531 11
Q ss_pred ------------------------EEEEEeCCCCCC--------hhhHHHHHhhccccCCCcEEEEecCChhhH------
Q 039127 76 ------------------------FNFALDDTWKEK--------YVDWTNMRDLFAAVASRSKVIVTTRNQGVA------ 117 (162)
Q Consensus 76 ------------------------~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~------ 117 (162)
.+++|||++... ......+...+. .. ...+|.||......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~-~~~~i~~~~~~~~~~~~~~~ 170 (195)
T 1jbk_A 93 AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RG-ELHCVGATTLDEYRQYIEKD 170 (195)
T ss_dssp TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TT-SCCEEEEECHHHHHHHTTTC
T ss_pred CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cC-CeEEEEeCCHHHHHHHHhcC
Confidence 589999997432 112333433332 22 34466666554422
Q ss_pred -hhhCCCCeeeCCCCCHHHHHHHH
Q 039127 118 -SIMGTMPAYELKKLVNDNCLLIF 140 (162)
Q Consensus 118 -~~~~~~~~~~l~~L~~~~~~~lf 140 (162)
.....-..+.+.+++.++..+++
T Consensus 171 ~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 171 AALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHhceeecCCCCHHHHHHHh
Confidence 11222225889999988877654
No 15
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.85 E-value=2.9e-08 Score=78.01 Aligned_cols=116 Identities=12% Similarity=0.120 Sum_probs=80.5
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc------------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV------------------------ 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------------------------ 74 (162)
..+++|++. .+.+.+.... ....+.|+|.+|+|||++|+.+.+....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFV 88 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCS
T ss_pred hhhccCcHHHHHHHHHHHHhCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCC
Confidence 457999998 4555554433 2346789999999999999988643210
Q ss_pred -------------e------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChh-hH-hhhC
Q 039127 75 -------------N------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQG-VA-SIMG 121 (162)
Q Consensus 75 -------------~------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~-v~-~~~~ 121 (162)
. .++++|+++..+...++.+...+........+|++|.... +. ....
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 168 (373)
T 1jr3_A 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 (373)
T ss_dssp SCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHT
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHh
Confidence 0 5899999987677778888877765555666666665432 22 2223
Q ss_pred CCCeeeCCCCCHHHHHHHHhhC
Q 039127 122 TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 122 ~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
....+++.+++.++...++...
T Consensus 169 r~~~i~~~~l~~~~~~~~l~~~ 190 (373)
T 1jr3_A 169 RCLQFHLKALDVEQIRHQLEHI 190 (373)
T ss_dssp TSEEEECCCCCHHHHHHHHHHH
T ss_pred heeEeeCCCCCHHHHHHHHHHH
Confidence 3347899999999999888754
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.83 E-value=1.4e-08 Score=80.08 Aligned_cols=118 Identities=16% Similarity=0.082 Sum_probs=73.5
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC-----------Cc--------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK-----------TV-------------- 74 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~-----------~~-------------- 74 (162)
..++||+. .+.+++.... .....+.+.|+|++|+|||+||+.+++.. ..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~---~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV---KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH---TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCChHHHHHHHHHHHHHHH---cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 68999998 4444443210 01234588899999999999999887531 00
Q ss_pred -----------------------e--------------EEEEEeCCCCCChhh-HHHHHhhccccCCCcEEEEecCChhh
Q 039127 75 -----------------------N--------------FNFALDDTWKEKYVD-WTNMRDLFAAVASRSKVIVTTRNQGV 116 (162)
Q Consensus 75 -----------------------~--------------~LlVlDdv~~~~~~~-~~~l~~~l~~~~~gs~iiiTTR~~~v 116 (162)
. .+++||+++...... .+.+...+.....+..+|+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 0 499999998322111 22202222222256788888886532
Q ss_pred ----Hhhh-CC-CCeeeCCCCCHHHHHHHHhhC
Q 039127 117 ----ASIM-GT-MPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 117 ----~~~~-~~-~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.... .. ...+++.+++.++...+|...
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~ 209 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKY 209 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHH
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 1111 11 127999999999999999876
No 17
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.82 E-value=2.2e-08 Score=78.91 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=79.0
Q ss_pred CceeeehH---HHHHHhhc---CCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC----ce-----------------
Q 039127 23 KLWLGREE---GTVELVLK---DDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT----VN----------------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~---~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~----~~----------------- 75 (162)
..++||+. .+.+++.. .. ....+.+.|+|.+|+|||+|++.+++... ..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~----~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNP----GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHST----TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC----CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHH
Confidence 67999998 45555443 12 12234788999999999999998875431 11
Q ss_pred ----------------------------------EEEEEeCCCCCChhhHHHHHhhccccC----CCcEEEEecCChhhH
Q 039127 76 ----------------------------------FNFALDDTWKEKYVDWTNMRDLFAAVA----SRSKVIVTTRNQGVA 117 (162)
Q Consensus 76 ----------------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iiiTTR~~~v~ 117 (162)
.+++||+++..+...+..|...+.... .+..+|++|+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 489999998666666667766654311 356777777765432
Q ss_pred hhhC-------CCCeeeCCCCCHHHHHHHHhhC
Q 039127 118 SIMG-------TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 118 ~~~~-------~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
..+. ....+++.+++.++...++...
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~ 205 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDR 205 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 2211 1235999999999999999765
No 18
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.80 E-value=3.3e-08 Score=80.63 Aligned_cols=115 Identities=14% Similarity=0.196 Sum_probs=75.6
Q ss_pred CCCceeeehH------HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-------------------
Q 039127 21 SVKLWLGREE------GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~------~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------- 75 (162)
...+++|++. .+...+.... ...+.|+|.+|+||||||+.+++.....
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~-------~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~ 96 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGH-------LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIE 96 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTC-------CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCC-------CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHH
Confidence 4578999887 2334444433 4678899999999999999998765433
Q ss_pred -----------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChh--h-HhhhCCCCeeeCCCCCHHHHHHHHh
Q 039127 76 -----------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQG--V-ASIMGTMPAYELKKLVNDNCLLIFS 141 (162)
Q Consensus 76 -----------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~--v-~~~~~~~~~~~l~~L~~~~~~~lf~ 141 (162)
.+|++|+++..+....+.|...+.. ..-.-|..||.+.. + ........++.+.+++.++...++.
T Consensus 97 ~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~ 175 (447)
T 3pvs_A 97 RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLT 175 (447)
T ss_dssp HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHH
Confidence 6999999997766677777666664 22223334666643 1 2223334478999999999998887
Q ss_pred hC
Q 039127 142 QH 143 (162)
Q Consensus 142 ~~ 143 (162)
+.
T Consensus 176 ~~ 177 (447)
T 3pvs_A 176 QA 177 (447)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.77 E-value=2.5e-08 Score=76.59 Aligned_cols=117 Identities=12% Similarity=0.122 Sum_probs=78.6
Q ss_pred CCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC---Cc----------------------
Q 039127 22 VKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK---TV---------------------- 74 (162)
Q Consensus 22 ~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~---~~---------------------- 74 (162)
..+++|++. +.+...+... ..+.+.++|.+|+|||++|+.+++.. ..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKI 89 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHH
Confidence 467899988 2222222222 23337899999999999998886542 00
Q ss_pred -------------eEEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChh-hH-hhhCCCCeeeCCCCCHHHHHHH
Q 039127 75 -------------NFNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQG-VA-SIMGTMPAYELKKLVNDNCLLI 139 (162)
Q Consensus 75 -------------~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~-v~-~~~~~~~~~~l~~L~~~~~~~l 139 (162)
..++++|+++..+...++.+...+.....+..+|++|.... +. ........+++.+++.++...+
T Consensus 90 ~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 169 (319)
T 2chq_A 90 KEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKR 169 (319)
T ss_dssp HHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHH
T ss_pred HHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHH
Confidence 06899999986666677777777765555677777776543 22 2223334799999999998888
Q ss_pred HhhCC
Q 039127 140 FSQHP 144 (162)
Q Consensus 140 f~~~a 144 (162)
+...+
T Consensus 170 l~~~~ 174 (319)
T 2chq_A 170 LLEIC 174 (319)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87543
No 20
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.72 E-value=1.3e-08 Score=74.95 Aligned_cols=97 Identities=19% Similarity=0.143 Sum_probs=61.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc-----e---------------------EEEEEeCCCCCChhh--HHHHHhhcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV-----N---------------------FNFALDDTWKEKYVD--WTNMRDLFA 99 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~-----~---------------------~LlVlDdv~~~~~~~--~~~l~~~l~ 99 (162)
...+.|+|.+|+|||+||+.+++.... . .++++||++...... .+.+...+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~ 131 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYN 131 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHH
Confidence 457789999999999999988754321 0 589999998543322 344444433
Q ss_pred cc-CCCc-EEEEecCChh---------hHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 100 AV-ASRS-KVIVTTRNQG---------VASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 100 ~~-~~gs-~iiiTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.. ..+. ++|+||+... +...+.....+++.+++.++..+++...+
T Consensus 132 ~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~ 187 (242)
T 3bos_A 132 RVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRA 187 (242)
T ss_dssp HHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHH
T ss_pred HHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHH
Confidence 21 1222 4777776422 11222222468999999999999988654
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.70 E-value=4.3e-08 Score=75.75 Aligned_cols=122 Identities=12% Similarity=0.077 Sum_probs=76.2
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
...+++|++. .+...+.... ........+.|+|.+|+|||+||+.+++.....
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~--~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 87 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAK--ARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANS 87 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHH--HHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTT
T ss_pred cHHHhhCHHHHHHHHHHHHHHHH--ccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHh
Confidence 4578999998 3433332100 000123467799999999999999997643221
Q ss_pred ----EEEEEeCCCCCChhhHHHHHhhccccC------------------CCcEEEEecCCh-hhHhhh-CC-CCeeeCCC
Q 039127 76 ----FNFALDDTWKEKYVDWTNMRDLFAAVA------------------SRSKVIVTTRNQ-GVASIM-GT-MPAYELKK 130 (162)
Q Consensus 76 ----~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiiTTR~~-~v~~~~-~~-~~~~~l~~ 130 (162)
.+++||+++.........+...+.... +...+|.+|... .+...+ .. ...+.+.+
T Consensus 88 ~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~ 167 (324)
T 1hqc_A 88 LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEY 167 (324)
T ss_dssp CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCC
T ss_pred ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCC
Confidence 689999999666666666665554321 234455555433 221111 11 23689999
Q ss_pred CCHHHHHHHHhhCC
Q 039127 131 LVNDNCLLIFSQHP 144 (162)
Q Consensus 131 L~~~~~~~lf~~~a 144 (162)
++.++...++...+
T Consensus 168 ~~~~e~~~~l~~~~ 181 (324)
T 1hqc_A 168 YTPEELAQGVMRDA 181 (324)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999988887654
No 22
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.69 E-value=9e-08 Score=74.21 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=74.1
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
...+++|++. .+.+++.... ....+.+.|.+|+|||++|+.+.+.....
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~------~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~ 97 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGK------IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFA 97 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTC------CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCC------CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHH
Confidence 3478999988 5555555433 23566777889999999999998765322
Q ss_pred ---------EEEEEeCCCCCC-hhhHHHHHhhccccCCCcEEEEecCChh-hHh-hhCCCCeeeCCCCCHHHH
Q 039127 76 ---------FNFALDDTWKEK-YVDWTNMRDLFAAVASRSKVIVTTRNQG-VAS-IMGTMPAYELKKLVNDNC 136 (162)
Q Consensus 76 ---------~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iiiTTR~~~-v~~-~~~~~~~~~l~~L~~~~~ 136 (162)
.++++|+++... .+..+.|...+........+|+||.... +.. .......+++.+++.++-
T Consensus 98 ~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~ 170 (324)
T 3u61_B 98 SAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDK 170 (324)
T ss_dssp HBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHH
T ss_pred hhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHH
Confidence 689999999666 6667777776665444567777776543 111 111123689999998774
No 23
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.68 E-value=6.8e-08 Score=75.26 Aligned_cols=122 Identities=13% Similarity=0.101 Sum_probs=78.8
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------- 75 (162)
...+++|++. .+..++.... ........+.|+|.+|+|||+||+.+++.....
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~--~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAK--KRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNL 104 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHH--HTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTC
T ss_pred CHHHhCChHHHHHHHHHHHHHHH--hcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhc
Confidence 4468999998 4444443210 001234457899999999999999998765432
Q ss_pred ---EEEEEeCCCCCChhhHHHHHhhccccC------------------CCcEEEEecCCh-hhHh-hhCC-CCeeeCCCC
Q 039127 76 ---FNFALDDTWKEKYVDWTNMRDLFAAVA------------------SRSKVIVTTRNQ-GVAS-IMGT-MPAYELKKL 131 (162)
Q Consensus 76 ---~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiiTTR~~-~v~~-~~~~-~~~~~l~~L 131 (162)
.+++||+++.........+...+.... +...+|.+|... .+.. .... ...+++.++
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCc
Confidence 689999999776777777776654321 113455555442 2211 1222 247999999
Q ss_pred CHHHHHHHHhhCC
Q 039127 132 VNDNCLLIFSQHP 144 (162)
Q Consensus 132 ~~~~~~~lf~~~a 144 (162)
+.++...++.+.+
T Consensus 185 ~~~e~~~il~~~~ 197 (338)
T 3pfi_A 185 KDSELALILQKAA 197 (338)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999988887653
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.68 E-value=1.1e-07 Score=72.39 Aligned_cols=125 Identities=18% Similarity=0.054 Sum_probs=74.2
Q ss_pred CCCceeeehH---HHHHHhhcC---CCC---CCCCCeEEEEEEcCCCcchHHHHHHHHccCCce----------------
Q 039127 21 SVKLWLGREE---GTVELVLKD---DSE---TIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~---~~~---~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------- 75 (162)
.-.+++|.+. .+.+.+... ... .+-....-+.|+|.+|+|||+||+.+++.....
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~ 94 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGE 94 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccch
Confidence 3467899998 444443211 000 000123457899999999999999998766443
Q ss_pred -----------------EEEEEeCCCCC-----------ChhhHHHHHhhcc-----ccCCCcEEEEecCChhhHh--hh
Q 039127 76 -----------------FNFALDDTWKE-----------KYVDWTNMRDLFA-----AVASRSKVIVTTRNQGVAS--IM 120 (162)
Q Consensus 76 -----------------~LlVlDdv~~~-----------~~~~~~~l~~~l~-----~~~~gs~iiiTTR~~~v~~--~~ 120 (162)
.+|+||+++.. +......+...+. ....+..+|.||....... ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~ 174 (285)
T 3h4m_A 95 GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAIL 174 (285)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHc
Confidence 58999999631 1112222322222 1223456777776543221 11
Q ss_pred CC---CCeeeCCCCCHHHHHHHHhhCCC
Q 039127 121 GT---MPAYELKKLVNDNCLLIFSQHPS 145 (162)
Q Consensus 121 ~~---~~~~~l~~L~~~~~~~lf~~~af 145 (162)
.. ...+.+...+.++..++|...+.
T Consensus 175 ~~~Rf~~~i~~~~p~~~~r~~il~~~~~ 202 (285)
T 3h4m_A 175 RPGRFDRIIEVPAPDEKGRLEILKIHTR 202 (285)
T ss_dssp STTSEEEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCCcCCeEEEECCCCHHHHHHHHHHHHh
Confidence 21 12688999999999999987643
No 25
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.59 E-value=6.8e-08 Score=66.78 Aligned_cols=85 Identities=13% Similarity=0.004 Sum_probs=55.8
Q ss_pred ceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-------------------------
Q 039127 24 LWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------- 75 (162)
Q Consensus 24 ~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------- 75 (162)
.++|++. ++.+.+..-. ....-|.|+|.+|+|||++|+.+++.....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~ 76 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQ 76 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTSSCHHHHHHHHT
T ss_pred CceeCCHHHHHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcchhhhcHHHHcC
Confidence 4678777 4444432211 011235699999999999999998763110
Q ss_pred -EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC
Q 039127 76 -FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN 113 (162)
Q Consensus 76 -~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~ 113 (162)
-.|+||+++..+......+...+.......++|.||..
T Consensus 77 ~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 77 GGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 47899999877777777777777544445577777754
No 26
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.59 E-value=7.9e-08 Score=73.84 Aligned_cols=95 Identities=14% Similarity=0.093 Sum_probs=66.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc-------e------------------------------EEEEEeCCCCC----
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV-------N------------------------------FNFALDDTWKE---- 86 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~-------~------------------------------~LlVlDdv~~~---- 86 (162)
...+.|+|.+|+|||+||+.+++.... . .+|++|+++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 146 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPD 146 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCC
Confidence 456789999999999999866543310 0 48999999833
Q ss_pred -----ChhhHHHHHhhccccCCCcEEEEecCChhh----------HhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 87 -----KYVDWTNMRDLFAAVASRSKVIVTTRNQGV----------ASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 87 -----~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
+......|...+........+|.||..... ...+ ...+++.+++.++...++...+
T Consensus 147 ~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 147 NERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp ---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHH
Confidence 455566777777665556677787765322 1111 1468999999999999886543
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.58 E-value=6e-07 Score=67.14 Aligned_cols=123 Identities=15% Similarity=0.044 Sum_probs=68.6
Q ss_pred CCceeeehH------HHHHHhhcCCCC--CCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------
Q 039127 22 VKLWLGREE------GTVELVLKDDSE--TIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------ 75 (162)
Q Consensus 22 ~~~~vGr~~------~i~~~l~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------ 75 (162)
-.+++|.+. +++.++...... .+....+-+.|+|.+|+|||++|+.+++.....
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGA 84 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhH
Confidence 357888887 333333322200 011223457799999999999999997754322
Q ss_pred ---------------EEEEEeCCCCCC------------h---hhHHHHHhhccc--cCCCcEEEEecCChhhH--hhhC
Q 039127 76 ---------------FNFALDDTWKEK------------Y---VDWTNMRDLFAA--VASRSKVIVTTRNQGVA--SIMG 121 (162)
Q Consensus 76 ---------------~LlVlDdv~~~~------------~---~~~~~l~~~l~~--~~~gs~iiiTTR~~~v~--~~~~ 121 (162)
.+|++|+++... . .....+...+.. ...+..+|.||...... ....
T Consensus 85 ~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~ 164 (262)
T 2qz4_A 85 ARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMR 164 (262)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhc
Confidence 689999998431 1 112223332222 12244566666554321 1122
Q ss_pred --C-CCeeeCCCCCHHHHHHHHhhCC
Q 039127 122 --T-MPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 122 --~-~~~~~l~~L~~~~~~~lf~~~a 144 (162)
. ...+.+...+.++..++|...+
T Consensus 165 ~~R~~~~i~i~~p~~~~r~~il~~~~ 190 (262)
T 2qz4_A 165 PGRLDRHVFIDLPTLQERREIFEQHL 190 (262)
T ss_dssp TTSCCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 1 2367899999999988887653
No 28
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.57 E-value=5.1e-07 Score=70.91 Aligned_cols=67 Identities=7% Similarity=0.135 Sum_probs=42.9
Q ss_pred EEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCC-------------hhh-HhhhCCCCeeeCCCCCHHHHHHHHhh
Q 039127 77 NFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN-------------QGV-ASIMGTMPAYELKKLVNDNCLLIFSQ 142 (162)
Q Consensus 77 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~-------------~~v-~~~~~~~~~~~l~~L~~~~~~~lf~~ 142 (162)
++++|+++..+...+..+...+...... .++++|.. ..+ ......-..+++.+++.++...++..
T Consensus 192 vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 192 VLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRI 270 (368)
T ss_dssp EEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHH
T ss_pred eEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 8999999977777777777776543333 34444431 111 11222223589999999999999986
Q ss_pred CC
Q 039127 143 HP 144 (162)
Q Consensus 143 ~a 144 (162)
.+
T Consensus 271 ~~ 272 (368)
T 3uk6_A 271 RC 272 (368)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 29
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.57 E-value=1.6e-07 Score=72.97 Aligned_cols=96 Identities=17% Similarity=0.102 Sum_probs=63.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC---Cce--------------------------------EEEEEeCCCCCCh--hh
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK---TVN--------------------------------FNFALDDTWKEKY--VD 90 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~---~~~--------------------------------~LlVlDdv~~~~~--~~ 90 (162)
...+.|+|.+|+|||+||+.+++.. ... .+|++|+++.... ..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~ 116 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERT 116 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHH
Confidence 4567899999999999999998754 111 4899999974332 23
Q ss_pred HHHHHhhccc-cCCCcEEEEecCChh---------hHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 91 WTNMRDLFAA-VASRSKVIVTTRNQG---------VASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 91 ~~~l~~~l~~-~~~gs~iiiTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.+.+...+.. ...+..+|+||.+.. +...+.....+++.+ +.++...++...+
T Consensus 117 ~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~ 179 (324)
T 1l8q_A 117 QIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKL 179 (324)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHH
Confidence 3444444432 234567888775431 222333334689999 9999999888764
No 30
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.54 E-value=1.2e-07 Score=77.00 Aligned_cols=97 Identities=14% Similarity=0.023 Sum_probs=66.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC-----Cce---------------------------------EEEEEeCCCCCCh-
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK-----TVN---------------------------------FNFALDDTWKEKY- 88 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~-----~~~---------------------------------~LlVlDdv~~~~~- 88 (162)
...+.|+|.+|+||||||+.+++.. ... -+|++||++....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 5578899999999999999987643 111 4899999974332
Q ss_pred -hhHHHHHhhccc-cCCCcEEEEecCCh---------hhHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 89 -VDWTNMRDLFAA-VASRSKVIVTTRNQ---------GVASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 89 -~~~~~l~~~l~~-~~~gs~iiiTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
...+.+...+.. ...|..||+||.+. .+...+.....+.+.+++.++...++.+.+
T Consensus 210 ~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~ 276 (440)
T 2z4s_A 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKML 276 (440)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 344455555432 24567888888763 223334333468899999999999987654
No 31
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=1.6e-07 Score=73.22 Aligned_cols=117 Identities=9% Similarity=0.075 Sum_probs=78.4
Q ss_pred CCCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC------ce----------------
Q 039127 21 SVKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------VN---------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------~~---------------- 75 (162)
...+++|++. .+..++.... ...+.++|.+|+|||++|+.+.+... ..
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN-------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR 107 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT-------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC-------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH
Confidence 3467899988 4544444432 22378999999999999988865421 00
Q ss_pred ---------------------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChh-hHhh-hCCCCee
Q 039127 76 ---------------------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQG-VASI-MGTMPAY 126 (162)
Q Consensus 76 ---------------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~-v~~~-~~~~~~~ 126 (162)
-++++|+++..+......+...+.......++|++|.... +... ......+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp THHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred HHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 1899999986667777777777766555666777664432 2111 1112368
Q ss_pred eCCCCCHHHHHHHHhhCC
Q 039127 127 ELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 127 ~l~~L~~~~~~~lf~~~a 144 (162)
++.+++.++....+...+
T Consensus 188 ~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFIS 205 (353)
T ss_dssp ECCCCCHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 899999999888887643
No 32
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.47 E-value=2.3e-07 Score=65.47 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=33.1
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...++||+. .+.+.+.... ...+.|+|.+|+|||+||+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~-------~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT-------KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS-------SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC-------CCceEEECCCCCCHHHHHHHHHHHH
Confidence 467999998 5555554432 3456799999999999999887653
No 33
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.42 E-value=2e-07 Score=66.37 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=44.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC----ce--------------------------------EEEEEeCCCCCChhhH
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT----VN--------------------------------FNFALDDTWKEKYVDW 91 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~----~~--------------------------------~LlVlDdv~~~~~~~~ 91 (162)
...+.|+|.+|+||||||+.+++... .. -+||||+++....+.|
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~ 117 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDW 117 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHH
Confidence 45788999999999999998875542 11 5899999984333333
Q ss_pred --HHHHhhcccc-CCCcEEEEecCCh
Q 039127 92 --TNMRDLFAAV-ASRSKVIVTTRNQ 114 (162)
Q Consensus 92 --~~l~~~l~~~-~~gs~iiiTTR~~ 114 (162)
..+...+... ..|..+|+||...
T Consensus 118 ~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 118 QRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3343433322 3567788888653
No 34
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=3.4e-06 Score=65.86 Aligned_cols=68 Identities=7% Similarity=0.029 Sum_probs=48.7
Q ss_pred EEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh-hhHh-hhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 77 NFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ-GVAS-IMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 77 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
++++|++...+......+...+.....+..+|++|.+. .+.. .......+++.+++.++....+.+.+
T Consensus 137 vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 137 CVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp EEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHH
Confidence 89999999777777778887776655567777777553 2222 22233579999999999998887654
No 35
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.38 E-value=1.1e-06 Score=66.11 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=65.0
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------ 75 (162)
..++|++. .+.+.+..-. .....+.|+|.+|+|||+||+.+++.....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~-----~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~ 80 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA-----PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH 80 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT-----TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCC
T ss_pred ccceeCCHHHHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCC
Confidence 45788877 4444333211 011356699999999999999998653210
Q ss_pred ---------------------EEEEEeCCCCCChhhHHHHHhhcccc-----------CCCcEEEEecCChh--------
Q 039127 76 ---------------------FNFALDDTWKEKYVDWTNMRDLFAAV-----------ASRSKVIVTTRNQG-------- 115 (162)
Q Consensus 76 ---------------------~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTTR~~~-------- 115 (162)
-+++||+++.........|...+... ....++|.||....
T Consensus 81 ~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~ 160 (265)
T 2bjv_A 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGT 160 (265)
T ss_dssp C---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTS
T ss_pred cccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCC
Confidence 27899999876677777776666532 12456777776521
Q ss_pred ----hHhhhCCCCeeeCCCCCH--HHHHHH
Q 039127 116 ----VASIMGTMPAYELKKLVN--DNCLLI 139 (162)
Q Consensus 116 ----v~~~~~~~~~~~l~~L~~--~~~~~l 139 (162)
+...+.. ..+++.+|.. ++...+
T Consensus 161 ~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l 189 (265)
T 2bjv_A 161 FRADLLDALAF-DVVQLPPLRERESDIMLM 189 (265)
T ss_dssp SCHHHHHHHCS-EEEECCCGGGCHHHHHHH
T ss_pred ccHHHHHhhcC-cEEeCCChhhhhHHHHHH
Confidence 1122222 2478889875 444433
No 36
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=2.3e-06 Score=66.86 Aligned_cols=115 Identities=10% Similarity=0.129 Sum_probs=75.2
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC-------------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT------------------------- 73 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~------------------------- 73 (162)
..+++|.+. .+...+..+. .+-+.++|..|+||||+|+.+.+...
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~-------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~ 96 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGK-------LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQ 96 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC-------CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTH
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-------CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHH
Confidence 467888877 3333333322 22378999999999999988765310
Q ss_pred -------------ceEEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChh-hHh-hhCCCCeeeCCCCCHHHHHH
Q 039127 74 -------------VNFNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQG-VAS-IMGTMPAYELKKLVNDNCLL 138 (162)
Q Consensus 74 -------------~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~-v~~-~~~~~~~~~l~~L~~~~~~~ 138 (162)
..-++|+|+++..+....+.|...+........+|++|.... +.. .......+++.+++.++...
T Consensus 97 i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~ 176 (340)
T 1sxj_C 97 IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIER 176 (340)
T ss_dssp HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHH
Confidence 015789999987677777778777765555666776665432 211 12222368899999888777
Q ss_pred HHhhC
Q 039127 139 IFSQH 143 (162)
Q Consensus 139 lf~~~ 143 (162)
.+...
T Consensus 177 ~l~~~ 181 (340)
T 1sxj_C 177 RIANV 181 (340)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 37
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.36 E-value=2.5e-07 Score=63.76 Aligned_cols=63 Identities=17% Similarity=0.049 Sum_probs=46.6
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC----ce------------------EEEEEeCCCCCChhhHHHHHhhcccc-CCCcE
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT----VN------------------FNFALDDTWKEKYVDWTNMRDLFAAV-ASRSK 106 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~----~~------------------~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ 106 (162)
-+.|+|.+|+|||++|+.+++... .. -.++||+++.........+...+... ..+.+
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~ 108 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVR 108 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCHHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCE
T ss_pred cEEEECCCCccHHHHHHHHHHhCCCeEEechhhCChHhhhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEE
Confidence 366999999999999999886543 00 47899999977777777777766654 23457
Q ss_pred EEEecC
Q 039127 107 VIVTTR 112 (162)
Q Consensus 107 iiiTTR 112 (162)
+|.||.
T Consensus 109 iI~~tn 114 (143)
T 3co5_A 109 VIASCS 114 (143)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 777774
No 38
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.33 E-value=2.2e-06 Score=66.31 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=67.6
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------ 75 (162)
..++|++. ++.+.+..-. .....+.|+|.+|+|||++|+.+++.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-----~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~ 76 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-----PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGH 76 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-----STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCC
T ss_pred CCcEECCHHHHHHHHHHHHHh-----CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCc
Confidence 35778877 4444433211 012245699999999999999998732100
Q ss_pred ---------------------EEEEEeCCCCCChhhHHHHHhhccccC-----------CCcEEEEecCChh--------
Q 039127 76 ---------------------FNFALDDTWKEKYVDWTNMRDLFAAVA-----------SRSKVIVTTRNQG-------- 115 (162)
Q Consensus 76 ---------------------~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTTR~~~-------- 115 (162)
-.|+||+++.........|...+.... ...+||.||....
T Consensus 77 ~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~ 156 (304)
T 1ojl_A 77 EKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGR 156 (304)
T ss_dssp CSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTS
T ss_pred cccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCC
Confidence 378999999777777777777665421 2356777776531
Q ss_pred ----hHhhhCCCCeeeCCCCC--HHHHHHHH
Q 039127 116 ----VASIMGTMPAYELKKLV--NDNCLLIF 140 (162)
Q Consensus 116 ----v~~~~~~~~~~~l~~L~--~~~~~~lf 140 (162)
+...+. .-.+++.+|. .+|...++
T Consensus 157 fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~ 186 (304)
T 1ojl_A 157 FRQDLYYRLN-VVAIEMPSLRQRREDIPLLA 186 (304)
T ss_dssp SCHHHHHHHS-SEEEECCCSGGGGGGHHHHH
T ss_pred cHHHHHhhcC-eeEEeccCHHHhHhhHHHHH
Confidence 111222 2247788988 45544444
No 39
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.33 E-value=4.9e-06 Score=65.63 Aligned_cols=96 Identities=14% Similarity=-0.059 Sum_probs=59.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCCCh-------
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKEKY------- 88 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~~~------- 88 (162)
+-+.|+|.+|+|||+||+.+++..... .+|+||+++....
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~ 164 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGES 164 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------C
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcc
Confidence 457799999999999999998765432 6899999984221
Q ss_pred ----hhHHHHHhhccc---cCCCcEEEEecCChh-hHh-hh-CCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 89 ----VDWTNMRDLFAA---VASRSKVIVTTRNQG-VAS-IM-GTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 89 ----~~~~~l~~~l~~---~~~gs~iiiTTR~~~-v~~-~~-~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.....+...+.. ...+..||.||.... +.. .. .-...+.+...+.++...+|..+.
T Consensus 165 ~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l 230 (355)
T 2qp9_X 165 EASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINV 230 (355)
T ss_dssp THHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHH
Confidence 112333333332 123445555665442 111 11 223467888899999888887654
No 40
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=4.2e-06 Score=69.17 Aligned_cols=123 Identities=11% Similarity=0.074 Sum_probs=74.0
Q ss_pred CCCceeeehH---HHHHHhhcCC----------CCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc-------------
Q 039127 21 SVKLWLGREE---GTVELVLKDD----------SETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV------------- 74 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~~----------~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~------------- 74 (162)
...+++|++. .+.+++.... ........+.+.|+|.+|+|||++|+.+++....
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~ 116 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCH
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchH
Confidence 3468999998 6666654310 0000113468889999999999999998754321
Q ss_pred --------------------------------eEEEEEeCCCCCCh---hhHHHHHhhccccCCCcEEEEecCCh--hhH
Q 039127 75 --------------------------------NFNFALDDTWKEKY---VDWTNMRDLFAAVASRSKVIVTTRNQ--GVA 117 (162)
Q Consensus 75 --------------------------------~~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~iiiTTR~~--~v~ 117 (162)
..++++|+++.... ..+..+...+.. ....-|++++... .+.
T Consensus 117 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIli~~~~~~~~l~ 195 (516)
T 1sxj_A 117 TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLILICNERNLPKMR 195 (516)
T ss_dssp HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEEEESCTTSSTTG
T ss_pred HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEEEEcCCCCccch
Confidence 15889999975322 223555555443 2223344444322 222
Q ss_pred hhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 118 SIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 118 ~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
........+.+.+++.++...++...+
T Consensus 196 ~l~~r~~~i~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 196 PFDRVCLDIQFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp GGTTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhHhceEEEEeCCCCHHHHHHHHHHHH
Confidence 222223368999999999888886644
No 41
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.31 E-value=6.2e-06 Score=63.13 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=73.6
Q ss_pred CceeeehH---HHHHHhhcCCC--CCCCCCeEEEEEEcCCCcchHHHHHHHHccCCc-----------------------
Q 039127 23 KLWLGREE---GTVELVLKDDS--ETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV----------------------- 74 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~----------------------- 74 (162)
..++|.+. .+...+..... .........+.++|.+|+|||++|+.+++....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 96 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhc
Confidence 45788888 33333322100 001123457889999999999999988654210
Q ss_pred ------------e-----------EEEEEeCCCCCChhhHHHHHhhccccC-----------CCcEEEEecCCh------
Q 039127 75 ------------N-----------FNFALDDTWKEKYVDWTNMRDLFAAVA-----------SRSKVIVTTRNQ------ 114 (162)
Q Consensus 75 ------------~-----------~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTTR~~------ 114 (162)
. -+++||+++..+...+..|...+.... ....+|.||...
T Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~ 176 (311)
T 4fcw_A 97 GAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILE 176 (311)
T ss_dssp CCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHT
T ss_pred CCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHh
Confidence 0 489999998777777777777665321 133366676651
Q ss_pred ---------hh--------H-----hhhCCC-CeeeCCCCCHHHHHHHHhhC
Q 039127 115 ---------GV--------A-----SIMGTM-PAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 115 ---------~v--------~-----~~~~~~-~~~~l~~L~~~~~~~lf~~~ 143 (162)
.+ . .....- ..+.+.+++.++...++...
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~ 228 (311)
T 4fcw_A 177 GLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ 228 (311)
T ss_dssp TTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHH
Confidence 11 0 111222 35778889988888877653
No 42
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.31 E-value=3.7e-07 Score=63.60 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=51.4
Q ss_pred CceeeehHHHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC---C--ce----------------EEEEEe
Q 039127 23 KLWLGREEGTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK---T--VN----------------FNFALD 81 (162)
Q Consensus 23 ~~~vGr~~~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~---~--~~----------------~LlVlD 81 (162)
..++|.+.+.+..|..-. -..+.|+|..|+|||||++.+++.. . .. -+++||
T Consensus 18 ~f~~g~n~~~~~~l~~~~-------g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lLilD 90 (149)
T 2kjq_A 18 KFLGTENAELVYVLRHKH-------GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVD 90 (149)
T ss_dssp CCCSCCTHHHHHHCCCCC-------CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCGGGGGCSEEEEE
T ss_pred hcCcCccHHHHHHHHhcC-------CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHHHHhCCCEEEEe
Confidence 444566555555443322 3478899999999999999987643 1 11 388999
Q ss_pred CCCCCChhhHHHHHhhccc-cCCCc-EEEEecCC
Q 039127 82 DTWKEKYVDWTNMRDLFAA-VASRS-KVIVTTRN 113 (162)
Q Consensus 82 dv~~~~~~~~~~l~~~l~~-~~~gs-~iiiTTR~ 113 (162)
|+........+.+...+.. ...|. .+|+||+.
T Consensus 91 E~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 91 QVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp STTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 9985433333444444332 12234 48888874
No 43
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.28 E-value=2.3e-05 Score=59.70 Aligned_cols=121 Identities=13% Similarity=0.034 Sum_probs=67.4
Q ss_pred CCCceeeehH---HHHHHhhcC---CC--CCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-----------------
Q 039127 21 SVKLWLGREE---GTVELVLKD---DS--ETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN----------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~---~i~~~l~~~---~~--~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------- 75 (162)
.-.+++|.+. .+.+.+... .. .........+.|+|.+|+|||+||+.+++.....
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~ 98 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDG 98 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCH
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchH
Confidence 3468999988 444333210 00 0001124577899999999999999998765432
Q ss_pred ----------------EEEEEeCCCCCC-----------hhhHHHHHhhccc---c--CCCcEEEEecCChh-----hHh
Q 039127 76 ----------------FNFALDDTWKEK-----------YVDWTNMRDLFAA---V--ASRSKVIVTTRNQG-----VAS 118 (162)
Q Consensus 76 ----------------~LlVlDdv~~~~-----------~~~~~~l~~~l~~---~--~~gs~iiiTTR~~~-----v~~ 118 (162)
.++++|+++... ......+...+.. . ..+..||.||.... +..
T Consensus 99 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~ 178 (297)
T 3b9p_A 99 EKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR 178 (297)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh
Confidence 689999986321 1112223322221 1 12345666666532 122
Q ss_pred hhCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 119 IMGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 119 ~~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.+ ...+.+...+.++...++...
T Consensus 179 R~--~~~i~~~~p~~~~r~~il~~~ 201 (297)
T 3b9p_A 179 RF--TKRVYVSLPDEQTRELLLNRL 201 (297)
T ss_dssp HC--CEEEECCCCCHHHHHHHHHHH
T ss_pred hC--CeEEEeCCcCHHHHHHHHHHH
Confidence 11 235777777888877777654
No 44
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.27 E-value=1e-05 Score=62.81 Aligned_cols=123 Identities=14% Similarity=-0.086 Sum_probs=72.4
Q ss_pred CCceeeehH---HHHHHhh---cCCCC--CCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------
Q 039127 22 VKLWLGREE---GTVELVL---KDDSE--TIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------ 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~---~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------ 75 (162)
-.+++|.+. .+.+.+. ..... ......+-+.++|.+|+|||+||+.+++.....
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~ 96 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 96 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHH
Confidence 367899888 4444331 10000 011234567899999999999999998765433
Q ss_pred ---------------EEEEEeCCCCCCh-----------hhHHHHHhhccc---cCCCcEEEEecCChhhH-hhh--CCC
Q 039127 76 ---------------FNFALDDTWKEKY-----------VDWTNMRDLFAA---VASRSKVIVTTRNQGVA-SIM--GTM 123 (162)
Q Consensus 76 ---------------~LlVlDdv~~~~~-----------~~~~~l~~~l~~---~~~gs~iiiTTR~~~v~-~~~--~~~ 123 (162)
.+|+||+++.... .....+...+.. ...+..||.||...... ..+ .-.
T Consensus 97 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~ 176 (322)
T 3eie_A 97 KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFE 176 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccC
Confidence 6899999973211 113344444332 23344566566553221 111 112
Q ss_pred CeeeCCCCCHHHHHHHHhhCC
Q 039127 124 PAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 124 ~~~~l~~L~~~~~~~lf~~~a 144 (162)
..+.+...+.++-.++|..++
T Consensus 177 ~~i~~~~p~~~~r~~il~~~~ 197 (322)
T 3eie_A 177 RRIYIPLPDLAARTTMFEINV 197 (322)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHh
Confidence 357888899999999988764
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.24 E-value=3.2e-06 Score=63.92 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=58.4
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCce----------------------------------EEEEEeCCCCC-----
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTVN----------------------------------FNFALDDTWKE----- 86 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------------------~LlVlDdv~~~----- 86 (162)
.....+.|+|.+|+|||+||+.+++..... .+|+||+++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCC
Confidence 346778899999999999999987643211 68999998621
Q ss_pred -----ChhhHHHHHhhccc---cCCCcEEEEecCChhhHhh---hCC-CCeeeCCCCCH-HHHHHHHhh
Q 039127 87 -----KYVDWTNMRDLFAA---VASRSKVIVTTRNQGVASI---MGT-MPAYELKKLVN-DNCLLIFSQ 142 (162)
Q Consensus 87 -----~~~~~~~l~~~l~~---~~~gs~iiiTTR~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~ 142 (162)
.......|...+.. ......||.||........ .+. ...+++.+++. ++...++..
T Consensus 142 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 142 IGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp TTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh
Confidence 12223334333332 1222346667766643322 122 23688988887 666666654
No 46
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.24 E-value=4.4e-06 Score=63.73 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=58.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc----------------------------------------eEEEEEeCCCCCCh
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV----------------------------------------NFNFALDDTWKEKY 88 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~----------------------------------------~~LlVlDdv~~~~~ 88 (162)
..+.++|.+|+|||++|+.+++.... ..+++||+++....
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 130 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK 130 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc
Confidence 45679999999999999998653211 16899999985432
Q ss_pred hh------------HHHHHhhcccc----------CCCcEEEEecC----Ch-hhH-hhhCCC-CeeeCCCCCHHHHHHH
Q 039127 89 VD------------WTNMRDLFAAV----------ASRSKVIVTTR----NQ-GVA-SIMGTM-PAYELKKLVNDNCLLI 139 (162)
Q Consensus 89 ~~------------~~~l~~~l~~~----------~~gs~iiiTTR----~~-~v~-~~~~~~-~~~~l~~L~~~~~~~l 139 (162)
.. +..|...+... ..+..+|.|+. .. .+. .....- ..+++.+++.++...+
T Consensus 131 ~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i 210 (310)
T 1ofh_A 131 KGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERI 210 (310)
T ss_dssp CSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHH
Confidence 22 44555444421 12344555531 21 111 111111 3589999999999999
Q ss_pred HhhC
Q 039127 140 FSQH 143 (162)
Q Consensus 140 f~~~ 143 (162)
+.+.
T Consensus 211 l~~~ 214 (310)
T 1ofh_A 211 LTEP 214 (310)
T ss_dssp HHSS
T ss_pred HHhh
Confidence 8853
No 47
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.23 E-value=7.4e-06 Score=63.54 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=73.0
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-----------------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN----------------------- 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------- 75 (162)
...++|++. .+...+.... -+.++|.+|+|||+||+.+.+.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~~---------~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~ 96 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTGG---------HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQ 96 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC---------CEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEET
T ss_pred ccceeCcHHHHHHHHHHHHcCC---------eEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecC
Confidence 367899988 4444444433 46799999999999999987632211
Q ss_pred --------------EEEEEeCCCCCChhhHHHHHhhcccc-----------CCCcEEEEecCChh------h-HhhhCCC
Q 039127 76 --------------FNFALDDTWKEKYVDWTNMRDLFAAV-----------ASRSKVIVTTRNQG------V-ASIMGTM 123 (162)
Q Consensus 76 --------------~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTTR~~~------v-~~~~~~~ 123 (162)
.++++|+++..+......+...+... .....++.|+.... + ......-
T Consensus 97 ~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf 176 (331)
T 2r44_A 97 HKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRF 176 (331)
T ss_dssp TTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTS
T ss_pred CCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhhe
Confidence 28899999876676666666555421 22344554554221 1 1122222
Q ss_pred C-eeeCCCCCHHHHHHHHhhCC
Q 039127 124 P-AYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 124 ~-~~~l~~L~~~~~~~lf~~~a 144 (162)
. .+.+.+.+.++-.+++.+.+
T Consensus 177 ~~~i~i~~p~~~~~~~il~~~~ 198 (331)
T 2r44_A 177 MMKIHLTYLDKESELEVMRRVS 198 (331)
T ss_dssp SEEEECCCCCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCHHHHHHHHHhcc
Confidence 2 48899999999999887754
No 48
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.23 E-value=1.2e-05 Score=61.92 Aligned_cols=97 Identities=12% Similarity=0.026 Sum_probs=61.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCCC-------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKEK------- 87 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~~------- 87 (162)
.+.+.|+|.+|+|||+||+.+++..... .++++|+++...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~ 128 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 128 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCc
Confidence 4567899999999999999998765432 699999997210
Q ss_pred -------hhhHHHHHhhccc--cCCCcEEEEecCChhhH-h-hhC---CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 88 -------YVDWTNMRDLFAA--VASRSKVIVTTRNQGVA-S-IMG---TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 88 -------~~~~~~l~~~l~~--~~~gs~iiiTTR~~~v~-~-~~~---~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
......+...+.. ...+..||.||...... . ... -...+.+...+.++-.++|+...
T Consensus 129 ~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 129 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp CCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 1113344444432 12344666677554321 1 122 12368899999998888887653
No 49
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.17 E-value=9.8e-06 Score=69.82 Aligned_cols=120 Identities=14% Similarity=0.075 Sum_probs=74.1
Q ss_pred CceeeehH---HHHHHhhcCCCC--CCCCCeEEEEEEcCCCcchHHHHHHHHccCCc---e-------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSE--TIDGGFFVIPIIGMGGSGNTTPALPVYNDKTV---N------------------- 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~---~------------------- 75 (162)
..++|.+. .+.+.+...... ........+.++|.+|+|||++|+.+++.... .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~ 570 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQ 570 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccch
Confidence 45788887 343433321100 11123346889999999999999998765310 0
Q ss_pred ----------EEEEEeCCCCCChhhHHHHHhhcccc-----------CCCcEEEEecCCh-----hh----H-----hhh
Q 039127 76 ----------FNFALDDTWKEKYVDWTNMRDLFAAV-----------ASRSKVIVTTRNQ-----GV----A-----SIM 120 (162)
Q Consensus 76 ----------~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTTR~~-----~v----~-----~~~ 120 (162)
.+++||+++....+.+..|...+..+ .....||.||... .+ . ...
T Consensus 571 l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~ 650 (758)
T 3pxi_A 571 LTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFI 650 (758)
T ss_dssp CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHH
T ss_pred hhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHH
Confidence 47999999977788888888777642 1245788888631 11 1 111
Q ss_pred CC-CCeeeCCCCCHHHHHHHHhh
Q 039127 121 GT-MPAYELKKLVNDNCLLIFSQ 142 (162)
Q Consensus 121 ~~-~~~~~l~~L~~~~~~~lf~~ 142 (162)
.. ...+.+.+++.++...++..
T Consensus 651 ~Rl~~~i~~~~l~~~~~~~i~~~ 673 (758)
T 3pxi_A 651 NRIDEIIVFHSLEKKHLTEIVSL 673 (758)
T ss_dssp TTSSEEEECC--CHHHHHHHHHH
T ss_pred hhCCeEEecCCCCHHHHHHHHHH
Confidence 22 23788999999988877754
No 50
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.16 E-value=1.7e-05 Score=61.91 Aligned_cols=97 Identities=8% Similarity=0.015 Sum_probs=69.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC--------------------------------------ce--------------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT--------------------------------------VN-------------- 75 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~--------------------------------------~~-------------- 75 (162)
...+.++|..|+|||++|+.+.+... ..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~ 103 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEH 103 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhc
Confidence 45788999999999999988753210 00
Q ss_pred ------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCCh-hhHh-hhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 76 ------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQ-GVAS-IMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 76 ------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
-++|+|+++..+....+.|...+........+|++|.+. .+.. .......+++.+++.++....+....
T Consensus 104 ~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc
Confidence 688999999777777888888887655566666666554 2332 22333479999999999988887764
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.16 E-value=4.8e-06 Score=72.72 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=64.8
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC----------Cce-------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK----------TVN------------- 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~----------~~~------------- 75 (162)
...++||+. .+++.|.... ..-+.++|.+|+|||+||+.+++.. ...
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~-------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~ 241 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT-------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA 241 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS-------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------
T ss_pred CcccCCcHHHHHHHHHHHhcCC-------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccC
Confidence 356899998 5666655433 2345799999999999999887653 111
Q ss_pred -----------------------EEEEEeCCCCCC--------hhhHHHHHhhccccCCCcEEEEecCChhhH------h
Q 039127 76 -----------------------FNFALDDTWKEK--------YVDWTNMRDLFAAVASRSKVIVTTRNQGVA------S 118 (162)
Q Consensus 76 -----------------------~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~------~ 118 (162)
.+|++|+++... .+....+...+.. . .-.+|.+|...... .
T Consensus 242 ~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~-~i~~I~at~~~~~~~~~~d~a 319 (854)
T 1qvr_A 242 KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-G-ELRLIGATTLDEYREIEKDPA 319 (854)
T ss_dssp ----CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-T-CCCEEEEECHHHHHHHTTCTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-C-CeEEEEecCchHHhhhccCHH
Confidence 588999997421 1112224333332 2 23455555433221 1
Q ss_pred hhCCCCeeeCCCCCHHHHHHHHhh
Q 039127 119 IMGTMPAYELKKLVNDNCLLIFSQ 142 (162)
Q Consensus 119 ~~~~~~~~~l~~L~~~~~~~lf~~ 142 (162)
....-..+.+.+++.++...++..
T Consensus 320 L~rRf~~i~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 320 LERRFQPVYVDEPTVEETISILRG 343 (854)
T ss_dssp TCSCCCCEEECCCCHHHHHHHHHH
T ss_pred HHhCCceEEeCCCCHHHHHHHHHh
Confidence 112223588999999999988863
No 52
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.16 E-value=1.5e-05 Score=62.77 Aligned_cols=122 Identities=13% Similarity=-0.014 Sum_probs=69.0
Q ss_pred CCceeeehH---HHHHHhhc---CCCC--CCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------
Q 039127 22 VKLWLGREE---GTVELVLK---DDSE--TIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------ 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~---~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------ 75 (162)
-.+++|.+. .+.+.+.. .... ......+.+.|+|.+|+|||+||+.+++.....
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~ 162 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGE 162 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHH
Confidence 367899988 34433321 1100 001234567899999999999999998765432
Q ss_pred ---------------EEEEEeCCCCC-----------ChhhHHHHHhhcccc----CCCcEEEEecCCh-hhHhh-hCC-
Q 039127 76 ---------------FNFALDDTWKE-----------KYVDWTNMRDLFAAV----ASRSKVIVTTRNQ-GVASI-MGT- 122 (162)
Q Consensus 76 ---------------~LlVlDdv~~~-----------~~~~~~~l~~~l~~~----~~gs~iiiTTR~~-~v~~~-~~~- 122 (162)
.+|+||+++.. ....+..+...+... ..+..||.||... .+... ...
T Consensus 163 ~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf 242 (357)
T 3d8b_A 163 KMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRL 242 (357)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTC
T ss_pred HHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhC
Confidence 68999998521 011233344433321 2233455566443 22111 122
Q ss_pred CCeeeCCCCCHHHHHHHHhhC
Q 039127 123 MPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 123 ~~~~~l~~L~~~~~~~lf~~~ 143 (162)
...+.+...+.++...++...
T Consensus 243 ~~~i~i~~p~~~~r~~il~~~ 263 (357)
T 3d8b_A 243 VKRLYIPLPEASARKQIVINL 263 (357)
T ss_dssp CEEEECCCCCHHHHHHHHHHH
T ss_pred ceEEEeCCcCHHHHHHHHHHH
Confidence 235788888888888887654
No 53
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.15 E-value=4e-05 Score=62.20 Aligned_cols=123 Identities=16% Similarity=-0.021 Sum_probs=71.1
Q ss_pred CCceeeehH---HHHHHhh---c-CCCC-CCCCCeEEEEEEcCCCcchHHHHHHHHccC-Cce-----------------
Q 039127 22 VKLWLGREE---GTVELVL---K-DDSE-TIDGGFFVIPIIGMGGSGNTTPALPVYNDK-TVN----------------- 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~---~-~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~-~~~----------------- 75 (162)
-.+++|.+. .+.+.+. . ..-- ......+-+.++|++|+|||+||+.+++.. ...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~ 212 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES 212 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------C
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchH
Confidence 367889888 4443331 1 1100 001234677899999999999999998765 211
Q ss_pred ----------------EEEEEeCCCCCC-------h----hhHHHHHhhccc---cCCCcEEEEecCChhh-Hh-hhCC-
Q 039127 76 ----------------FNFALDDTWKEK-------Y----VDWTNMRDLFAA---VASRSKVIVTTRNQGV-AS-IMGT- 122 (162)
Q Consensus 76 ----------------~LlVlDdv~~~~-------~----~~~~~l~~~l~~---~~~gs~iiiTTR~~~v-~~-~~~~- 122 (162)
.+|+||+++... . .....+...+.. ...+..||.||..... .. ....
T Consensus 213 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf 292 (444)
T 2zan_A 213 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF 292 (444)
T ss_dssp CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhc
Confidence 689999998431 0 122333333332 1234456666655422 11 1222
Q ss_pred CCeeeCCCCCHHHHHHHHhhCC
Q 039127 123 MPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 123 ~~~~~l~~L~~~~~~~lf~~~a 144 (162)
...+.+...+.++...+|..+.
T Consensus 293 ~~~i~i~~P~~~~r~~il~~~l 314 (444)
T 2zan_A 293 EKRIYIPLPEAHARAAMFRLHL 314 (444)
T ss_dssp CEEEECCCCCHHHHHHHHHHHH
T ss_pred ceEEEeCCcCHHHHHHHHHHHH
Confidence 2367788888888888887654
No 54
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.14 E-value=2.5e-05 Score=62.11 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=69.5
Q ss_pred CCceeeehH---HHHHHhhc----CCC-CCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------
Q 039127 22 VKLWLGREE---GTVELVLK----DDS-ETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------ 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~----~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------ 75 (162)
-.+++|++. .+.+.+.. ... .......+-+.|+|.+|+|||+||+.+++.....
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~ 193 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGE 193 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHH
Confidence 357899988 44444311 000 0001123567899999999999999998765433
Q ss_pred ---------------EEEEEeCCCCC-----------ChhhHHHHHhhcccc----CCCcEEEEecCChh-hHh-hhCCC
Q 039127 76 ---------------FNFALDDTWKE-----------KYVDWTNMRDLFAAV----ASRSKVIVTTRNQG-VAS-IMGTM 123 (162)
Q Consensus 76 ---------------~LlVlDdv~~~-----------~~~~~~~l~~~l~~~----~~gs~iiiTTR~~~-v~~-~~~~~ 123 (162)
.+|+||+++.. .......+...+... .....||.||.... +.. ....-
T Consensus 194 ~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~ 273 (389)
T 3vfd_A 194 KLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRF 273 (389)
T ss_dssp HHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTC
T ss_pred HHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCc
Confidence 58999999632 111222333333211 12234555554432 211 12222
Q ss_pred -CeeeCCCCCHHHHHHHHhhCC
Q 039127 124 -PAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 124 -~~~~l~~L~~~~~~~lf~~~a 144 (162)
..+.+...+.++...++...+
T Consensus 274 ~~~i~i~~p~~~~r~~il~~~~ 295 (389)
T 3vfd_A 274 IKRVYVSLPNEETRLLLLKNLL 295 (389)
T ss_dssp CEEEECCCCCHHHHHHHHHHHH
T ss_pred ceEEEcCCcCHHHHHHHHHHHH
Confidence 357888899999888887654
No 55
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.14 E-value=9.3e-06 Score=66.83 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=61.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC--------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE-------- 86 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~-------- 86 (162)
..-+.|+|.+|+|||+||+.+++..... .+|+||+++..
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~ 317 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH 317 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc
Confidence 3457799999999999999998765433 49999998411
Q ss_pred ---ChhhHHHHHhhcccc--CCCcEEEEecCChh-hHhhh-C---CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 87 ---KYVDWTNMRDLFAAV--ASRSKVIVTTRNQG-VASIM-G---TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 87 ---~~~~~~~l~~~l~~~--~~gs~iiiTTR~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.......|...+... .....||.||.... +...+ . -...+.+...+.++-.++|..++
T Consensus 318 ~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 112334455554432 22335555665542 22222 1 12368899999999999998764
No 56
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=9.3e-06 Score=62.94 Aligned_cols=96 Identities=9% Similarity=-0.005 Sum_probs=72.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc---C-----C----------ce--------------------EEEEEeCCCCCChh
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND---K-----T----------VN--------------------FNFALDDTWKEKYV 89 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~---~-----~----------~~--------------------~LlVlDdv~~~~~~ 89 (162)
.+.+.++|..|.|||++|+.+.+. . . .. -++|+|+++..+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~ 97 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ 97 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH
Confidence 678889999999999999988652 0 0 00 58999999988888
Q ss_pred hHHHHHhhccccCCCcEEEEecCC-hhhHhhhCCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 90 DWTNMRDLFAAVASRSKVIVTTRN-QGVASIMGTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 90 ~~~~l~~~l~~~~~gs~iiiTTR~-~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
..+.|+..+....+.+.+|++|.+ ..+...+... .+++.+++.++....+.+.+
T Consensus 98 a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 98 AANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 888888888766666766666544 3444444444 79999999999998887654
No 57
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.12 E-value=6.7e-07 Score=64.62 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=20.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..+.|+|.+|+|||+||+.+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 577899999999999999987643
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.98 E-value=2.8e-05 Score=66.92 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=67.0
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC----------c---------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT----------V--------------- 74 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~----------~--------------- 74 (162)
..++||+. .+++.|.... ..-+.++|.+|+|||++|+.+++... .
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~-------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~ 258 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR-------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTK 258 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCC
T ss_pred CCccCCHHHHHHHHHHHhccC-------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcccc
Confidence 57899998 5565555433 33457999999999999998875420 0
Q ss_pred --------------------eEEEEEeCCCCC--------ChhhHHHHHhhccccCCCcEEEEecCChhhHhhh------
Q 039127 75 --------------------NFNFALDDTWKE--------KYVDWTNMRDLFAAVASRSKVIVTTRNQGVASIM------ 120 (162)
Q Consensus 75 --------------------~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~~~------ 120 (162)
..+|++|+++.. .......+...+... ....+|.+|.........
T Consensus 259 ~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~~~~~~~~~d~aL 337 (758)
T 1r6b_X 259 YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_dssp CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHHHHHCCCCCTTSS
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCchHHhhhhhcCHHH
Confidence 068899999843 111222222222222 234556665543322111
Q ss_pred -CCCCeeeCCCCCHHHHHHHHhh
Q 039127 121 -GTMPAYELKKLVNDNCLLIFSQ 142 (162)
Q Consensus 121 -~~~~~~~l~~L~~~~~~~lf~~ 142 (162)
..-..+.+...+.++..+++..
T Consensus 338 ~~Rf~~i~v~~p~~~e~~~il~~ 360 (758)
T 1r6b_X 338 ARRFQKIDITEPSIEETVQIING 360 (758)
T ss_dssp GGGEEEEECCCCCHHHHHHHHHH
T ss_pred HhCceEEEcCCCCHHHHHHHHHH
Confidence 1112588999999998888864
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.97 E-value=1.8e-05 Score=64.74 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=63.8
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC----------Cce-------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK----------TVN------------- 75 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~----------~~~------------- 75 (162)
...++||+. .++..|.... ..-+.++|.+|+|||++|+.+++.. ...
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~-------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~ 251 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRT-------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGE 251 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS-------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------
T ss_pred CCCccCcHHHHHHHHHHHhccC-------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccch
Confidence 356999999 5555554433 2345699999999999999987653 000
Q ss_pred -----------------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChhhHh-------hhCCCCeeeCCCC
Q 039127 76 -----------------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQGVAS-------IMGTMPAYELKKL 131 (162)
Q Consensus 76 -----------------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~-------~~~~~~~~~l~~L 131 (162)
.++++| . ..+....|+..+.. ..-++|.+|....... ....-.++.+.+.
T Consensus 252 ~e~~~~~~~~~~~~~~~~iLfiD--~--~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p 325 (468)
T 3pxg_A 252 FEDRLKKVMDEIRQAGNIILFID--A--AIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQP 325 (468)
T ss_dssp -CTTHHHHHHHHHTCCCCEEEEC--C----------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCC
T ss_pred HHHHHHHHHHHHHhcCCeEEEEe--C--chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCC
Confidence 467777 2 33333334443331 1234555554433111 1112236899999
Q ss_pred CHHHHHHHHhhCC
Q 039127 132 VNDNCLLIFSQHP 144 (162)
Q Consensus 132 ~~~~~~~lf~~~a 144 (162)
+.++...++...+
T Consensus 326 ~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 326 SVDESIQILQGLR 338 (468)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998653
No 60
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.97 E-value=7.4e-06 Score=63.92 Aligned_cols=46 Identities=11% Similarity=-0.018 Sum_probs=31.0
Q ss_pred ceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 24 LWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 24 ~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+.||++ .+...|...- .+.....+.|+|.+|.|||++++.+.+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i---~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL---MSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh---cCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4788988 3333332210 11245677899999999999999887654
No 61
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.96 E-value=6.8e-05 Score=58.29 Aligned_cols=97 Identities=13% Similarity=-0.021 Sum_probs=59.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC-Cce---------------------------------EEEEEeCCCCC-------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK-TVN---------------------------------FNFALDDTWKE------- 86 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~-~~~---------------------------------~LlVlDdv~~~------- 86 (162)
.+-+.++|.+|+|||+||+.+++.. ... .+|++|+++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~ 124 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN 124 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc
Confidence 4577899999999999999998765 211 68999999742
Q ss_pred Chh----hHHHHHhhccc---cCCCcEEEEecCChh-hHhh-h-CCCCeeeCCCCCHHHHHHHHhhCC
Q 039127 87 KYV----DWTNMRDLFAA---VASRSKVIVTTRNQG-VASI-M-GTMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 87 ~~~----~~~~l~~~l~~---~~~gs~iiiTTR~~~-v~~~-~-~~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
... ....+...+.. ...+..||.||.... +... . .-...+.+...+.++...+|+.+.
T Consensus 125 ~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l 192 (322)
T 1xwi_A 125 ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHL 192 (322)
T ss_dssp CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHH
Confidence 011 12223333322 123344555564432 1111 1 222367888889998888887653
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.96 E-value=3.8e-05 Score=59.58 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=28.9
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|.+. .+...+.... ..-+.|+|.+|+|||+||+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~-------~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG-------IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG-------GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCC-------CceEEEECCCCccHHHHHHHHHHhC
Confidence 56899988 2222222222 1237799999999999999987543
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.94 E-value=9.2e-05 Score=63.69 Aligned_cols=96 Identities=11% Similarity=0.096 Sum_probs=64.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce-------------------------------------------EEEEEeCCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN-------------------------------------------FNFALDDTW 84 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------------------------------~LlVlDdv~ 84 (162)
...+.++|.+|+|||++|+.+++..... .+++||+++
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~ 567 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIE 567 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGG
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcc
Confidence 4468899999999999999987543210 588999999
Q ss_pred CCChhhHHHHHhhccccC-----------CCcEEEEecCChh----------------------h-----HhhhCCC-Ce
Q 039127 85 KEKYVDWTNMRDLFAAVA-----------SRSKVIVTTRNQG----------------------V-----ASIMGTM-PA 125 (162)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~-----------~gs~iiiTTR~~~----------------------v-----~~~~~~~-~~ 125 (162)
....+.+..|...+..+. ....||.||.... + ......- ..
T Consensus 568 ~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~ 647 (758)
T 1r6b_X 568 KAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNI 647 (758)
T ss_dssp GSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEE
T ss_pred ccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcc
Confidence 777777778777765321 2344677765411 0 1111222 36
Q ss_pred eeCCCCCHHHHHHHHhhC
Q 039127 126 YELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 126 ~~l~~L~~~~~~~lf~~~ 143 (162)
+.+.+|+.++...++...
T Consensus 648 i~~~~l~~~~~~~i~~~~ 665 (758)
T 1r6b_X 648 IWFDHLSTDVIHQVVDKF 665 (758)
T ss_dssp EECCCCCHHHHHHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHH
Confidence 889999998888777653
No 64
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.89 E-value=3.1e-05 Score=60.42 Aligned_cols=123 Identities=17% Similarity=0.118 Sum_probs=69.5
Q ss_pred CCCceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce-----------------------
Q 039127 21 SVKLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN----------------------- 75 (162)
Q Consensus 21 ~~~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~----------------------- 75 (162)
....++|.+. +-+...+.... ..+.....+.++|.+|+||||||+.+++.....
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~-~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~ 101 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAK-MRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLE 101 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHH-HHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCC
T ss_pred cHHHccCcHHHHHHHHHHHHHHH-hcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHcc
Confidence 4467888876 32333222100 001223568899999999999999998654111
Q ss_pred --EEEEEeCCCCCChhhHHHHHhhccccC--------C-----------CcEEEEecCChhhHhhhCC-C-CeeeCCCCC
Q 039127 76 --FNFALDDTWKEKYVDWTNMRDLFAAVA--------S-----------RSKVIVTTRNQGVASIMGT-M-PAYELKKLV 132 (162)
Q Consensus 76 --~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~-----------gs~iiiTTR~~~v~~~~~~-~-~~~~l~~L~ 132 (162)
.++++|+++.......+.+...+.... . -.-+..|++...+...... . -...+++.+
T Consensus 102 ~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~ 181 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYT 181 (334)
T ss_dssp TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCC
Confidence 477889987544444444433322111 0 1112235554443322211 1 247899999
Q ss_pred HHHHHHHHhhCC
Q 039127 133 NDNCLLIFSQHP 144 (162)
Q Consensus 133 ~~~~~~lf~~~a 144 (162)
.++-..++.+.+
T Consensus 182 ~~~l~~iL~~~~ 193 (334)
T 1in4_A 182 VKELKEIIKRAA 193 (334)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 65
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.86 E-value=0.00013 Score=60.14 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=69.7
Q ss_pred CceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------------
Q 039127 23 KLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------------ 75 (162)
Q Consensus 23 ~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------------ 75 (162)
..++|++. .+...+.... -+.++|.+|+|||+||+.+++.....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~---------~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~ 92 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQA 92 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC---------EEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC---
T ss_pred hhhHHHHHHHHHHHHHHhcCC---------eeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHH
Confidence 67899998 3333344433 56799999999999999998644210
Q ss_pred -------------E-----EEEEeCCCCCChhhHHHHHhhcccc----------CCCcEEEEecCC-hh----hHhhhCC
Q 039127 76 -------------F-----NFALDDTWKEKYVDWTNMRDLFAAV----------ASRSKVIVTTRN-QG----VASIMGT 122 (162)
Q Consensus 76 -------------~-----LlVlDdv~~~~~~~~~~l~~~l~~~----------~~gs~iiiTTR~-~~----v~~~~~~ 122 (162)
+ ++++|+++..+......|...+... .+...+|++|.. .. .......
T Consensus 93 ~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldR 172 (500)
T 3nbx_X 93 LKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDR 172 (500)
T ss_dssp -------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTT
T ss_pred HhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHH
Confidence 2 5999999877777777777666321 111133666642 11 0011111
Q ss_pred -CCeeeCCCCCH-HHHHHHHhhCC
Q 039127 123 -MPAYELKKLVN-DNCLLIFSQHP 144 (162)
Q Consensus 123 -~~~~~l~~L~~-~~~~~lf~~~a 144 (162)
...+.+++++. ++-..++....
T Consensus 173 F~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 173 MLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCEEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHhhhhhhHHHHHhccc
Confidence 22477888887 55667777654
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.84 E-value=7.3e-05 Score=64.41 Aligned_cols=110 Identities=14% Similarity=0.113 Sum_probs=64.9
Q ss_pred CCceeeehH---HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC----------Cc--------------
Q 039127 22 VKLWLGREE---GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK----------TV-------------- 74 (162)
Q Consensus 22 ~~~~vGr~~---~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~----------~~-------------- 74 (162)
...++||+. .++..|.... ..-+.++|.+|+|||++|+.+++.. ..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~-------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~ 251 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT-------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGE 251 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS-------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------
T ss_pred CCCccCchHHHHHHHHHHhCCC-------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccch
Confidence 357899999 5666665433 2236799999999999999987653 00
Q ss_pred -----e-----------EEEEEeCCCCCChhhHHHHHhhccccCCCcEEEEecCChhhHh-------hhCCCCeeeCCCC
Q 039127 75 -----N-----------FNFALDDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQGVAS-------IMGTMPAYELKKL 131 (162)
Q Consensus 75 -----~-----------~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~-------~~~~~~~~~l~~L 131 (162)
+ .+|++| . ..+....+...+. ...-++|.+|....... ....-..+.+...
T Consensus 252 ~e~~l~~~~~~~~~~~~~iLfiD--~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p 325 (758)
T 3pxi_A 252 FEDRLKKVMDEIRQAGNIILFID--A--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQP 325 (758)
T ss_dssp -CTTHHHHHHHHHTCCCCEEEEC--C----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCC
T ss_pred HHHHHHHHHHHHHhcCCEEEEEc--C--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCC
Confidence 0 577788 2 3333333443333 12335555555443211 1111236899999
Q ss_pred CHHHHHHHHhhCC
Q 039127 132 VNDNCLLIFSQHP 144 (162)
Q Consensus 132 ~~~~~~~lf~~~a 144 (162)
+.++...++....
T Consensus 326 ~~~~~~~il~~~~ 338 (758)
T 3pxi_A 326 SVDESIQILQGLR 338 (758)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998643
No 67
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00014 Score=58.44 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=61.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC--------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE-------- 86 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~-------- 86 (162)
.+-+.++|++|.|||.||+++++..... +++.+|+++..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~ 261 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS 261 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSS
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCC
Confidence 4567799999999999999998876544 89999998742
Q ss_pred Ch--hh----HHHHHhhccc--cCCCcEEEEecCChhhH-h-hhC---CCCeeeCCCCCHHHHHHHHhhC
Q 039127 87 KY--VD----WTNMRDLFAA--VASRSKVIVTTRNQGVA-S-IMG---TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 87 ~~--~~----~~~l~~~l~~--~~~gs~iiiTTR~~~v~-~-~~~---~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
+. .. ...++..+.. ...+-.||.||...+.. . ... -+..+.+...+.++-.++|+.+
T Consensus 262 ~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~ 331 (405)
T 4b4t_J 262 GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIH 331 (405)
T ss_dssp SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHH
Confidence 00 11 2223333332 22333556666554321 1 122 2347889989988888888755
No 68
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.80 E-value=0.0002 Score=54.48 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=58.9
Q ss_pred EEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCCC----------
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKEK---------- 87 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~~---------- 87 (162)
+.++|.+|+||||||+.++...... +++++|+++...
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~ 126 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGA 126 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchH
Confidence 8899999999999999998654321 689999987310
Q ss_pred -hhhHHHHHhhcccc--CCCcEEEEecCChhhHh--hhC---CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 88 -YVDWTNMRDLFAAV--ASRSKVIVTTRNQGVAS--IMG---TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 88 -~~~~~~l~~~l~~~--~~gs~iiiTTR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
......+...+..+ ....-++.+|....+.. ... -...+.+...+.++-.++|+...
T Consensus 127 ~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 127 SVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 01122333333322 22334555666654432 121 23367899999999888887653
No 69
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.79 E-value=3.4e-05 Score=59.17 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..+.+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345778999999999999999987653
No 70
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.78 E-value=6.7e-05 Score=56.04 Aligned_cols=122 Identities=14% Similarity=-0.004 Sum_probs=66.9
Q ss_pred CCceeeehH------HHHHHhhcCCCC--CCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------
Q 039127 22 VKLWLGREE------GTVELVLKDDSE--TIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------ 75 (162)
Q Consensus 22 ~~~~vGr~~------~i~~~l~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------ 75 (162)
-.+++|.+. +++.++...... .+....+-+.|+|.+|+|||+||+.+++.....
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~ 90 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGA 90 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhH
Confidence 467899887 344444322100 001112347799999999999999997654321
Q ss_pred ---------------EEEEEeCCCCCC----------h----hhHHHHHhhccc--cCCCcEEEEecCChh-hHhh-hCC
Q 039127 76 ---------------FNFALDDTWKEK----------Y----VDWTNMRDLFAA--VASRSKVIVTTRNQG-VASI-MGT 122 (162)
Q Consensus 76 ---------------~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~~~gs~iiiTTR~~~-v~~~-~~~ 122 (162)
.++++|+++... . .....+...+.. ...+..+|.||.... +... ...
T Consensus 91 ~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~ 170 (257)
T 1lv7_A 91 SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRP 170 (257)
T ss_dssp HHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGST
T ss_pred HHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCC
Confidence 588999984210 0 112233333321 123445666665543 2111 111
Q ss_pred ---CCeeeCCCCCHHHHHHHHhhC
Q 039127 123 ---MPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 123 ---~~~~~l~~L~~~~~~~lf~~~ 143 (162)
...+.+...+.++-.+++..+
T Consensus 171 ~rf~~~i~i~~P~~~~r~~il~~~ 194 (257)
T 1lv7_A 171 GRFDRQVVVGLPDVRGREQILKVH 194 (257)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHH
T ss_pred CcCCeEEEeCCCCHHHHHHHHHHH
Confidence 235778888888877777654
No 71
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.77 E-value=9.5e-06 Score=60.97 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=55.8
Q ss_pred EEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCCChh--------
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKEKYV-------- 89 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~~~~-------- 89 (162)
+.|+|.+|+|||+||+.+++..... .+|++|+++.....
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~ 126 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS 126 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC---------
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCC
Confidence 6699999999999999998653211 68999999632111
Q ss_pred -------hHHHHHhhcccc---CCCcEEEEecCChhhH--hhhC---CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 90 -------DWTNMRDLFAAV---ASRSKVIVTTRNQGVA--SIMG---TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 90 -------~~~~l~~~l~~~---~~gs~iiiTTR~~~v~--~~~~---~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.+..+...+... .....+|.||...... .... -...+.+...+.++..+++...+
T Consensus 127 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 127 GNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp -CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 122233333211 1123566666654321 1111 12357888888888888887553
No 72
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.77 E-value=8.5e-06 Score=59.80 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=32.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce-------------------EEEEEeCCCCCChhhHHHHH
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN-------------------FNFALDDTWKEKYVDWTNMR 95 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-------------------~LlVlDdv~~~~~~~~~~l~ 95 (162)
...+.++|++|.|||++|..+++....+ -+++|||+. ...|..+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s~f~l~~l~~~kIiiLDEad---~~~~~~~d 121 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDAT---TTCWTYFD 121 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSSCGGGGGGTTCSSEEEEEEC---HHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccchhhhcccCCCCEEEEECCC---chhHHHHH
Confidence 3458899999999999987776543221 578999996 33455543
No 73
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.74 E-value=8.7e-06 Score=63.10 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...+.|+|.+|+|||+||..+++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999888754
No 74
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.72 E-value=0.00011 Score=61.11 Aligned_cols=97 Identities=19% Similarity=0.146 Sum_probs=58.4
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce-----------------------------------------EEEEEeCCCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN-----------------------------------------FNFALDDTWK 85 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----------------------------------------~LlVlDdv~~ 85 (162)
....+.++|.+|+||||||+.++...... -+++||+++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~ 186 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDK 186 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhh
Confidence 34588999999999999999987543211 4788999885
Q ss_pred CChh----hHHHHHhhccccC---------------CCcEEEEecCChhh-H-hhhCCCCeeeCCCCCHHHHHHHHhhC
Q 039127 86 EKYV----DWTNMRDLFAAVA---------------SRSKVIVTTRNQGV-A-SIMGTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 86 ~~~~----~~~~l~~~l~~~~---------------~gs~iiiTTR~~~v-~-~~~~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
.... ....+...+.... ....+|.||..... . ........+.+.+++.++-..++..+
T Consensus 187 l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~ 265 (543)
T 3m6a_A 187 MSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDH 265 (543)
T ss_dssp CC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHT
T ss_pred hhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHH
Confidence 4333 2234444442111 22355666654321 1 11111236899999999988888765
No 75
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00019 Score=58.21 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=61.3
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC-------
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE------- 86 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~------- 86 (162)
..+-+.++|++|.|||.||+++++..... +++.+|+++..
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~ 293 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSE 293 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSS
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccC
Confidence 35677899999999999999998876544 89999998732
Q ss_pred ---Chh----hHHHHHhhccc--cCCCcEEEEecCChhhH-h-hhCC---CCeeeCCCCCHHHHHHHHhhC
Q 039127 87 ---KYV----DWTNMRDLFAA--VASRSKVIVTTRNQGVA-S-IMGT---MPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 87 ---~~~----~~~~l~~~l~~--~~~gs~iiiTTR~~~v~-~-~~~~---~~~~~l~~L~~~~~~~lf~~~ 143 (162)
... ....++..+.. ...+..||.||...+.. . ...+ +..+++...+.++-.++|+.+
T Consensus 294 ~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~ 364 (437)
T 4b4t_L 294 GTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIH 364 (437)
T ss_dssp CCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHH
Confidence 001 12233333332 22344667777654432 1 1222 235778888888888888754
No 76
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.70 E-value=0.00018 Score=56.81 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=20.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..+.++|.+|+|||++|+.+++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999987654
No 77
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.67 E-value=0.00015 Score=59.47 Aligned_cols=122 Identities=16% Similarity=0.040 Sum_probs=69.4
Q ss_pred CCceeeehH------HHHHHhhcCCC--CCCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------
Q 039127 22 VKLWLGREE------GTVELVLKDDS--ETIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------ 75 (162)
Q Consensus 22 ~~~~vGr~~------~i~~~l~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------ 75 (162)
-.+++|.++ +++..+..... ..+....+-+.|+|++|+|||+||+.+++.....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~ 94 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGA 94 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccH
Confidence 357899888 34444322100 0000112337799999999999999998754332
Q ss_pred ---------------EEEEEeCCCCCCh--------------hhHHHHHhhccc--cCCCcEEEEecCChhhHh--hhCC
Q 039127 76 ---------------FNFALDDTWKEKY--------------VDWTNMRDLFAA--VASRSKVIVTTRNQGVAS--IMGT 122 (162)
Q Consensus 76 ---------------~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs~iiiTTR~~~v~~--~~~~ 122 (162)
.+|+||+++.... .....+...+.. ...+..||.||...+... ....
T Consensus 95 ~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~ 174 (476)
T 2ce7_A 95 ARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRP 174 (476)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGST
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhccc
Confidence 6999999863211 122333333321 123456666776654321 2222
Q ss_pred ---CCeeeCCCCCHHHHHHHHhhC
Q 039127 123 ---MPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 123 ---~~~~~l~~L~~~~~~~lf~~~ 143 (162)
...+.+...+.++-.++|+.+
T Consensus 175 gRFd~~i~i~~Pd~~~R~~Il~~~ 198 (476)
T 2ce7_A 175 GRFDKKIVVDPPDMLGRKKILEIH 198 (476)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHH
T ss_pred CcceeEeecCCCCHHHHHHHHHHH
Confidence 226788888887777777654
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.66 E-value=0.00024 Score=61.99 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=47.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc---e-------------------------------------------EEEEEe
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV---N-------------------------------------------FNFALD 81 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~---~-------------------------------------------~LlVlD 81 (162)
...+.|+|..|+|||++|+.+++.... . -+|+||
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lD 667 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFD 667 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEES
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEe
Confidence 457889999999999999988654310 0 478999
Q ss_pred CCCCCChhhHHHHHhhccccC-----------CCcEEEEecCC
Q 039127 82 DTWKEKYVDWTNMRDLFAAVA-----------SRSKVIVTTRN 113 (162)
Q Consensus 82 dv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTTR~ 113 (162)
++...+.+.+..|...+..+. ++..||.||..
T Consensus 668 Ei~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 668 EIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp SGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred cccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 998777788888877776431 23447777764
No 79
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00016 Score=58.63 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=60.2
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC-----C-
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE-----K- 87 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~-----~- 87 (162)
..+-|.++|++|.|||.||+++++..... +++.+|+++.. +
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~ 293 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS 293 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSG
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCC
Confidence 35677899999999999999998876544 89999998621 0
Q ss_pred -h---hh----HHHHHhhcccc--CCCcEEEEecCChhhH-h-hhCC---CCeeeCCCCCHHHHHHHHhhC
Q 039127 88 -Y---VD----WTNMRDLFAAV--ASRSKVIVTTRNQGVA-S-IMGT---MPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 88 -~---~~----~~~l~~~l~~~--~~gs~iiiTTR~~~v~-~-~~~~---~~~~~l~~L~~~~~~~lf~~~ 143 (162)
. .. ...++..+... ..+-.||.||...+.. . ...+ +..+++...+.++-.++|+.+
T Consensus 294 ~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~ 364 (434)
T 4b4t_M 294 EKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIH 364 (434)
T ss_dssp GGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHH
Confidence 0 11 12233333321 2233566677665432 1 1122 235788888888888888644
No 80
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00018 Score=58.69 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=60.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC-------
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE------- 86 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~------- 86 (162)
..+-|.++|++|.|||.||+++++..... +++++|+++..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~ 321 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDD 321 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSS
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCc
Confidence 35667799999999999999998866544 89999998732
Q ss_pred -Ch--h----hHHHHHhhcccc--CCCcEEEEecCChhhH-h-hhC---CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 87 -KY--V----DWTNMRDLFAAV--ASRSKVIVTTRNQGVA-S-IMG---TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 87 -~~--~----~~~~l~~~l~~~--~~gs~iiiTTR~~~v~-~-~~~---~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.. . ....++..+... ..+-.||.||...+.. . ... -...+++...+.++-.++|+.+.
T Consensus 322 ~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l 393 (467)
T 4b4t_H 322 GAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS 393 (467)
T ss_dssp SCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHh
Confidence 00 0 112222333221 2233456666554321 1 222 23468888888888888887553
No 81
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.57 E-value=0.00047 Score=56.86 Aligned_cols=123 Identities=15% Similarity=0.050 Sum_probs=70.4
Q ss_pred CCceeeehH------HHHHHhhcCCCC--CCCCCeEEEEEEcCCCcchHHHHHHHHccCCce------------------
Q 039127 22 VKLWLGREE------GTVELVLKDDSE--TIDGGFFVIPIIGMGGSGNTTPALPVYNDKTVN------------------ 75 (162)
Q Consensus 22 ~~~~vGr~~------~i~~~l~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~------------------ 75 (162)
-.+++|.++ +++..+...... .+-.-.+-+.|+|.+|+|||+||+.+++.....
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~ 109 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 109 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHH
Confidence 467899888 344443221100 000111237899999999999999998654322
Q ss_pred ---------------EEEEEeCCCCCC----------hhh----HHHHHhhcccc--CCCcEEEEecCChhhHh--hhC-
Q 039127 76 ---------------FNFALDDTWKEK----------YVD----WTNMRDLFAAV--ASRSKVIVTTRNQGVAS--IMG- 121 (162)
Q Consensus 76 ---------------~LlVlDdv~~~~----------~~~----~~~l~~~l~~~--~~gs~iiiTTR~~~v~~--~~~- 121 (162)
.++++|+++... .+. ...+...+... ..+..++.+|....... ...
T Consensus 110 ~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~ 189 (499)
T 2dhr_A 110 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRP 189 (499)
T ss_dssp HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSST
T ss_pred HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccc
Confidence 689999985321 111 22333333322 22334555666654421 111
Q ss_pred --CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 122 --TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 122 --~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
-...+.+...+.++-.++|+.++
T Consensus 190 gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 190 GRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp TSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred cccceEEecCCCCHHHHHHHHHHHH
Confidence 12367899899988888887664
No 82
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.56 E-value=0.0004 Score=51.64 Aligned_cols=93 Identities=13% Similarity=0.092 Sum_probs=55.7
Q ss_pred EEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC----------C
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE----------K 87 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~----------~ 87 (162)
+.|+|.+|+||||||+.+++..... .++++|+++.. .
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~ 131 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 131 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccccc
Confidence 8899999999999999998654322 68999998411 0
Q ss_pred hhh----HHHHHhhccccCC--CcEEEEecCChhhHh--hhC---CCCeeeCCCCCHHHHHHHHhhC
Q 039127 88 YVD----WTNMRDLFAAVAS--RSKVIVTTRNQGVAS--IMG---TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 88 ~~~----~~~l~~~l~~~~~--gs~iiiTTR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
... ...+...+..... ...++.+|....... ... -...+.+...+.++-.++++..
T Consensus 132 ~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 132 NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 011 1233333332222 223445665554321 111 1236788888988878887654
No 83
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.56 E-value=0.00063 Score=51.68 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=54.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC---------c---------eEEEEEeCCCCCChhhHHHHHhhcc--------cc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT---------V---------NFNFALDDTWKEKYVDWTNMRDLFA--------AV 101 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~---------~---------~~LlVlDdv~~~~~~~~~~l~~~l~--------~~ 101 (162)
..-+.++|++|.|||.+|..+.+... . +.+++.|+... ..+....++..+. ..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l~G~vn~~~~~f~l~~~~~k~i~l~Ee~~~-~~d~~~~lr~i~~G~~~~id~K~ 182 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKM-TAKVVESAKAILGGSKVRVDQKC 182 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSCEEECCTTCSSCTTGGGSSCSEEEECSCCE-ETTTHHHHHHHHTTCCEEC----
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcccceeeccccccccccccccEEEEeccccc-hhHHHHHHHHHhCCCcEEEecCc
Confidence 45688999999999999999987420 0 05555555532 1222234444332 11
Q ss_pred C-----CCcEEEEecCCh-------------hhHhhhCCCCeeeCC--------CCCHHHHHHHHh
Q 039127 102 A-----SRSKVIVTTRNQ-------------GVASIMGTMPAYELK--------KLVNDNCLLIFS 141 (162)
Q Consensus 102 ~-----~gs~iiiTTR~~-------------~v~~~~~~~~~~~l~--------~L~~~~~~~lf~ 141 (162)
. +...+|+||-.. .....-.....++.. +|++++...+|.
T Consensus 183 k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 183 KSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp --CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred CCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH
Confidence 1 345789999872 111222222245555 799999999887
No 84
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.55 E-value=0.00041 Score=52.42 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=55.3
Q ss_pred EEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC--C--------
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE--K-------- 87 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~--~-------- 87 (162)
+.|+|.+|+||||||+.++...... .++++|+++.. .
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~ 155 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 155 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCc
Confidence 7899999999999999998654321 68999998411 0
Q ss_pred hhhH----HHHHhhccccCC--CcEEEEecCChhhHh--hhC---CCCeeeCCCCCHHHHHHHHhhC
Q 039127 88 YVDW----TNMRDLFAAVAS--RSKVIVTTRNQGVAS--IMG---TMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 88 ~~~~----~~l~~~l~~~~~--gs~iiiTTR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
...+ ..+...+..... ...++.+|....... ... -...+.+...+.++-.+++..+
T Consensus 156 ~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 222 (278)
T 1iy2_A 156 NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH 222 (278)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 1111 222222322221 223444555544321 111 2346889999988888887754
No 85
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.51 E-value=0.0004 Score=60.34 Aligned_cols=98 Identities=15% Similarity=0.061 Sum_probs=61.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC-------
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE------- 86 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~------- 86 (162)
..+-|.++|++|.|||+||+.+++..... .+|++|+++..
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~ 316 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC
Confidence 35667899999999999999999887655 79999998631
Q ss_pred Chh----hHHHHHhhcccc--CCCcEEEEecCChh-hHhhhC----CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 87 KYV----DWTNMRDLFAAV--ASRSKVIVTTRNQG-VASIMG----TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 87 ~~~----~~~~l~~~l~~~--~~gs~iiiTTR~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
+.+ ....|...+... ..+-.||.||...+ +-..+. -...+++...+.++-.++|+.+.
T Consensus 317 ~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh
Confidence 001 122233322221 12334555665433 222221 12368899999999999998764
No 86
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.49 E-value=0.00024 Score=55.81 Aligned_cols=25 Identities=32% Similarity=0.161 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...+.++|.+|+|||++|+.+++..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999998754
No 87
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00029 Score=57.02 Aligned_cols=98 Identities=14% Similarity=0.035 Sum_probs=60.4
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC-------
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE------- 86 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~------- 86 (162)
..+-|.++|++|.|||.||+++++..... +++.+|+++..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~ 294 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDS 294 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCS
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCC
Confidence 34667899999999999999999776544 88999987631
Q ss_pred ---Ch----hhHHHHHhhccc--cCCCcEEEEecCChhhH-hh-hCC---CCeeeCCCCCHHHHHHHHhhCC
Q 039127 87 ---KY----VDWTNMRDLFAA--VASRSKVIVTTRNQGVA-SI-MGT---MPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 87 ---~~----~~~~~l~~~l~~--~~~gs~iiiTTR~~~v~-~~-~~~---~~~~~l~~L~~~~~~~lf~~~a 144 (162)
.. .....++..+.. ...+..||.||...+.. .. ..+ +..+++..-+.++-.++|+.+.
T Consensus 295 ~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 295 NSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT 366 (437)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence 00 112223333322 12234566666554432 21 222 2257788888888888887553
No 88
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.39 E-value=0.0011 Score=57.60 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=58.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCCC-------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKEK------- 87 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~~------- 87 (162)
...+.|+|.+|+||||||+.+.+..... .++++|+++..-
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~ 317 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH 317 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc
Confidence 4468899999999999999998765432 699999985210
Q ss_pred ----hhhHHHHHhhcccc--CCCcEEEEecCChh-hHhhhCC----CCeeeCCCCCHHHHHHHHhhCC
Q 039127 88 ----YVDWTNMRDLFAAV--ASRSKVIVTTRNQG-VASIMGT----MPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 88 ----~~~~~~l~~~l~~~--~~gs~iiiTTR~~~-v~~~~~~----~~~~~l~~L~~~~~~~lf~~~a 144 (162)
......+...+... .....+|.||.... +...+.. ...+.+...+.++-.+++...+
T Consensus 318 ~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp SHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 11122333333221 12334555554432 2221111 2346788888999888887654
No 89
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.35 E-value=0.00024 Score=59.76 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=30.6
Q ss_pred CceeeehH--HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 23 KLWLGREE--GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 23 ~~~vGr~~--~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..++|.+. +.+....... ..+.|+|.+|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 56888887 4444444433 37789999999999999998654
No 90
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.33 E-value=0.00011 Score=50.91 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+|.|.|++|+||||+|+.+ ....
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 47889999999999999999 4443
No 91
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.30 E-value=0.00012 Score=51.38 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=24.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCceEE
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVNFN 77 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~L 77 (162)
.+|.|.|++|+||||+|+.+.......++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 47889999999999999999987654443
No 92
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.26 E-value=0.00013 Score=50.65 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3788999999999999999987643
No 93
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.23 E-value=0.0002 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=20.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4788999999999999999987
No 94
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.22 E-value=0.00021 Score=50.63 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
-.+++|+|+.|+|||||++.+.....
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~ 34 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPG 34 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccC
Confidence 35899999999999999999988743
No 95
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.18 E-value=0.00042 Score=52.99 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=28.9
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 31 GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 31 ~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+++..++... .......++.|.|++|+||||+|+.+....
T Consensus 18 ~~~~~~l~~~--~~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 18 DNLEELIQGK--KAVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp HHHHHHHTTC--CCCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred HHHHHHhccc--cCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455555443 233446788999999999999999998754
No 96
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.16 E-value=0.00042 Score=50.18 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...+++|+|..|+|||||++.+.....
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467999999999999999998876543
No 97
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.16 E-value=0.0004 Score=49.70 Aligned_cols=21 Identities=33% Similarity=0.200 Sum_probs=17.2
Q ss_pred EEEEEEcCCCcchHHHHHHHH
Q 039127 49 FVIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~ 69 (162)
.++.++|..|+||||++..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 477899999999999984443
No 98
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.14 E-value=0.00024 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999987543
No 99
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00033 Score=56.71 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
..+-+.++|++|.|||.||+++++.....
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35567899999999999999998776544
No 100
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.12 E-value=0.00024 Score=51.10 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...|.|+|+.|+||||+|+.+.....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35889999999999999999987654
No 101
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.11 E-value=0.00023 Score=50.29 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+.|.|+|+.|+||||+|+.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34788999999999999999987654
No 102
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.09 E-value=0.00021 Score=49.84 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988754
No 103
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.08 E-value=0.0004 Score=49.14 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999987543
No 104
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.08 E-value=0.00064 Score=48.96 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=27.7
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 31 GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 31 ~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
++++.+.... .....+++|.|..|+|||||++.+...
T Consensus 9 ~l~~~~~~~~----~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 9 FLCKTILAIK----TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHTSC----CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhc----cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4566665432 134578999999999999999988764
No 105
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.08 E-value=0.00051 Score=51.38 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=29.9
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 31 GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 31 ~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+++..++... .......++.++|++|+||||+|+.+.....
T Consensus 17 ~~~~~~~~~~--~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 17 RNLRSLTRGK--KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp HHHHHHHTTC--CCCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred HHHHHHHccC--CcccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4445555444 2334467899999999999999999987654
No 106
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.08 E-value=0.00038 Score=50.03 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..++.|+|+.|+|||||++.+....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999987655
No 107
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.08 E-value=0.00038 Score=58.56 Aligned_cols=50 Identities=16% Similarity=0.069 Sum_probs=38.8
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce--------------------------------------EEEEEeCCCCCChhhH
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN--------------------------------------FNFALDDTWKEKYVDW 91 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~--------------------------------------~LlVlDdv~~~~~~~~ 91 (162)
-+.++|.+|+|||+||+.+++..... -++++|+++..+....
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q 408 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDR 408 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHH
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHh
Confidence 46799999999999999987654311 4789999997777777
Q ss_pred HHHHhhcc
Q 039127 92 TNMRDLFA 99 (162)
Q Consensus 92 ~~l~~~l~ 99 (162)
..|...+.
T Consensus 409 ~~Ll~~le 416 (595)
T 3f9v_A 409 VAIHEAME 416 (595)
T ss_dssp HHHHHHHH
T ss_pred hhhHHHHh
Confidence 77776654
No 108
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.04 E-value=0.00047 Score=48.24 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.-.++.|+|+.|+||||+++.+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999987654
No 109
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.03 E-value=0.00033 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999997754
No 110
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.03 E-value=0.00067 Score=55.09 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=33.2
Q ss_pred CceeeehH------HHHHHhhcCCCCCCCCCeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 23 KLWLGREE------GTVELVLKDDSETIDGGFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 23 ~~~vGr~~------~i~~~l~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|.+. .+++.+.... ...+-+.++|++|+|||+||+.+.+...
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~-----~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKK-----MAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC-----CTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCC-----CCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 68999998 3344444333 2234577999999999999999987654
No 111
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.02 E-value=0.00022 Score=51.23 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..+|.|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999997764
No 112
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.01 E-value=0.00034 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.5
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 688999999999999999988655
No 113
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.01 E-value=0.00035 Score=49.47 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 588999999999999999987654
No 114
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.01 E-value=0.0005 Score=49.27 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
....+|.|.|+.|+||||+|+.+.....
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3467899999999999999999986654
No 115
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.98 E-value=0.00053 Score=48.90 Aligned_cols=25 Identities=32% Similarity=0.236 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...+|+|.|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999876
No 116
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.97 E-value=0.00041 Score=52.04 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.++.|+|+.|+||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4788999999999999999986543
No 117
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.96 E-value=0.0005 Score=48.54 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999876543
No 118
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.95 E-value=0.00042 Score=49.80 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..+++|+|+.|+|||||++.+....
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999997655
No 119
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.95 E-value=0.00031 Score=49.49 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+.|.|+|++|+||||+|+.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999986654
No 120
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.95 E-value=0.00056 Score=48.49 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|+.|+|||||++.+....
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 478899999999999999998643
No 121
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.93 E-value=0.00047 Score=47.97 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...+|.|.|+.|+||||+|+.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999987654
No 122
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.92 E-value=0.00056 Score=48.18 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-..|.+.|+.|+||||+|+.+....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999997644
No 123
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.92 E-value=0.00061 Score=49.08 Aligned_cols=27 Identities=37% Similarity=0.294 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...+++|.|..|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999887543
No 124
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.92 E-value=0.0023 Score=49.46 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||++.+..-..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHHcCCC
Confidence 4889999999999999999976543
No 125
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.92 E-value=0.00056 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999999875
No 126
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.92 E-value=0.00056 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999987543
No 127
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.92 E-value=0.00055 Score=48.96 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=21.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999987653
No 128
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.90 E-value=0.00053 Score=48.61 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..+|.|.|+.|+||||+|+.+.....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999986553
No 129
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.89 E-value=0.00057 Score=48.49 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...|.|+|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999887
No 130
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.89 E-value=0.00086 Score=48.26 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...+++|.|..|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998865
No 131
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.89 E-value=0.00075 Score=47.76 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...++.+.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45788999999999999999987654
No 132
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.89 E-value=0.00055 Score=48.12 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHH
Q 039127 48 FFVIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~ 69 (162)
-.+++|+|..|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4589999999999999999533
No 133
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.89 E-value=0.00058 Score=48.82 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 588999999999999999987655
No 134
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.88 E-value=0.00066 Score=49.19 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
-.+++|+|+.|+|||||++.+.....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999987654
No 135
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.88 E-value=0.00038 Score=50.17 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++.|+|++|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999999999999987655
No 136
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.88 E-value=0.00065 Score=48.67 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
....|.|.|++|+||||+|+.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345889999999999999999987543
No 137
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.88 E-value=0.0057 Score=48.33 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=39.3
Q ss_pred EEEEcCCCcchHHHHHHHHccCCce--------------------------------------------EEEEEeCCCCC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTVN--------------------------------------------FNFALDDTWKE 86 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~~--------------------------------------------~LlVlDdv~~~ 86 (162)
+.|+|.+|.||+.+|+.++...... -.|+||++.+.
T Consensus 155 vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l 234 (368)
T 3dzd_A 155 VLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGEL 234 (368)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGS
T ss_pred heEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhhC
Confidence 5589999999999999987542211 25899999988
Q ss_pred ChhhHHHHHhhccc
Q 039127 87 KYVDWTNMRDLFAA 100 (162)
Q Consensus 87 ~~~~~~~l~~~l~~ 100 (162)
+......|...+..
T Consensus 235 ~~~~Q~~Ll~~l~~ 248 (368)
T 3dzd_A 235 DQRVQAKLLRVLET 248 (368)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888887754
No 138
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.88 E-value=0.00037 Score=48.93 Aligned_cols=29 Identities=28% Similarity=0.167 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCceE
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVNF 76 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~ 76 (162)
..+|.|.|+.|+||||+|+.+.......+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~ 33 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSF 33 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 35789999999999999999987655433
No 139
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.87 E-value=0.00048 Score=48.97 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+|+|.|+.|+||||+|+.+.....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987643
No 140
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.87 E-value=0.00049 Score=48.23 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.7
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCc
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.|.|.|++|+||||+|+.+......
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5889999999999999999876543
No 141
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.87 E-value=0.00059 Score=48.92 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHc
Q 039127 50 VIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~ 70 (162)
+|+|.|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 142
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.87 E-value=0.00039 Score=49.03 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.0
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+|.|.|++|+||||+|+.+.....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999987643
No 143
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.85 E-value=0.00087 Score=47.20 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..+|.|.|+.|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987543
No 144
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.85 E-value=0.00062 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=20.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999887643
No 145
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.85 E-value=0.00077 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
.+++|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 146
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.83 E-value=0.00062 Score=47.16 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.1
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987644
No 147
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.83 E-value=0.00063 Score=48.05 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998754
No 148
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.81 E-value=0.00051 Score=47.80 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999987654
No 149
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.81 E-value=0.0078 Score=41.43 Aligned_cols=25 Identities=24% Similarity=0.196 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
....|+++|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557889999999999999998653
No 150
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.80 E-value=0.00082 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=20.2
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHc
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
.+.++|+|.|-||+||||.|..+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4578999999999999998765543
No 151
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.80 E-value=0.0026 Score=43.92 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+++|.+|+|||||...+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 45567899999999999999987654
No 152
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.79 E-value=0.00058 Score=48.53 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999988543
No 153
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.78 E-value=0.00079 Score=49.92 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..+++|+|+.|+|||||++.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999843
No 154
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.77 E-value=0.00079 Score=47.88 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=18.4
Q ss_pred EEEEEcCCCcchHHHHHHHHc
Q 039127 50 VIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~ 70 (162)
.++|+|..|+|||||++.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999988753
No 155
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.77 E-value=0.00075 Score=49.08 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...|.|.|++|+||||+|+.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35788999999999999999987654
No 156
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.75 E-value=0.001 Score=50.98 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....+|+|.|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999998876544
No 157
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.75 E-value=0.00094 Score=49.77 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
....+|+|.|..|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999987544
No 158
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.74 E-value=0.001 Score=46.73 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-.++.|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999987753
No 159
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.73 E-value=0.00074 Score=49.42 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...|.|.|+.|+||||+|+.+.....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999987654
No 160
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.73 E-value=0.00088 Score=47.80 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=22.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..|+|.|+.|+||||+++.+....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999876
No 161
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.72 E-value=0.00081 Score=48.30 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 162
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.71 E-value=0.0051 Score=49.39 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...+|.|+|++|+||||+|+.+..+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999987653
No 163
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.71 E-value=0.00094 Score=48.02 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999999998864
No 164
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.70 E-value=0.0025 Score=55.38 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=53.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCCC-------
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKEK------- 87 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~~------- 87 (162)
.+-+.++|++|.|||.||+++++..... ++|++|+++..-
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~ 590 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 590 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC-------
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCC
Confidence 4456799999999999999999887654 899999986320
Q ss_pred ---h----hhHHHHHhhccccC--CCcEEEEecCChhh-Hh-hhC---CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 88 ---Y----VDWTNMRDLFAAVA--SRSKVIVTTRNQGV-AS-IMG---TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 88 ---~----~~~~~l~~~l~~~~--~gs~iiiTTR~~~v-~~-~~~---~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
. .....|+..+.... .+--||.||...+. -. .+. -...+.+..-+.++-.++|+.+.
T Consensus 591 ~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 591 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp -------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 0 01233443333222 22233335544332 11 122 23467787777777778887654
No 165
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.69 E-value=0.0011 Score=48.88 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=25.2
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.+.++|.|.|++|+||+|.|+.+.......
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 457899999999999999999998776543
No 166
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.69 E-value=0.0005 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+|+|.|..|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999987654
No 167
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.68 E-value=0.003 Score=49.83 Aligned_cols=65 Identities=12% Similarity=0.036 Sum_probs=43.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC----ce-------------------------------------------EEEEEe
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT----VN-------------------------------------------FNFALD 81 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~----~~-------------------------------------------~LlVlD 81 (162)
.++.|+|..|+|||||.+.+..... .. =++++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 4899999999999999988743221 11 467788
Q ss_pred CCCCCChhhHHHHHhhccccCCCcEEEEecCChhhHh
Q 039127 82 DTWKEKYVDWTNMRDLFAAVASRSKVIVTTRNQGVAS 118 (162)
Q Consensus 82 dv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~v~~ 118 (162)
... +.+.++.+.... ..|..+|+|+...+.+.
T Consensus 204 Ep~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 204 EMR--DLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred CCC--CHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 887 666655544432 23556888887765543
No 168
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.67 E-value=0.00092 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999986654
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.67 E-value=0.00079 Score=48.48 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
+.++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999998875
No 170
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.67 E-value=0.0038 Score=43.66 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.-.|+++|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 455779999999999999998765
No 171
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.66 E-value=0.00099 Score=48.20 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976553
No 172
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.66 E-value=0.0011 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998764
No 173
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.64 E-value=0.019 Score=40.03 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+++|.+|+|||||...+.+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999998543
No 174
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.63 E-value=0.0012 Score=47.67 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||++.+..-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999987654
No 175
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.63 E-value=0.0014 Score=47.42 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..+|.|.|+.|+||||+++.+....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999987654
No 176
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.62 E-value=0.00087 Score=48.80 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..|.|.|++|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999987654
No 177
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.61 E-value=0.0039 Score=45.04 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=20.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
--|+++|.+|+|||+|...+.+..
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 456799999999999999987553
No 178
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.61 E-value=0.00083 Score=48.93 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999987654
No 179
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.61 E-value=0.0016 Score=50.44 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
....+++|.|..|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34679999999999999999988763
No 180
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.58 E-value=0.0013 Score=49.14 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..+|+|.|+.|+||||+++.+...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999844
No 181
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.57 E-value=0.0016 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..+++|.|..|+|||||++.+...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988764
No 182
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.57 E-value=0.00091 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+.|+|+|+.|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 347799999999999999987654
No 183
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.56 E-value=0.0017 Score=49.41 Aligned_cols=24 Identities=33% Similarity=0.706 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999873
No 184
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.56 E-value=0.0016 Score=47.23 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
-.+++|+|..|+|||||++.+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 185
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.55 E-value=0.0092 Score=41.29 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...|+++|.+|+|||||...+...
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456779999999999999998743
No 186
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.54 E-value=0.0015 Score=48.58 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|.|.|++|+||||+|+.+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999997654
No 187
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.53 E-value=0.023 Score=38.64 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|.++|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999987543
No 188
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.52 E-value=0.0014 Score=46.41 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..+++.|.|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999998887653
No 189
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.52 E-value=0.002 Score=46.38 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..-.+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999999876
No 190
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.52 E-value=0.0014 Score=47.59 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..+.++|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34688999999999999999988654
No 191
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.51 E-value=0.0016 Score=47.83 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.3
Q ss_pred EEEEEEcCCCcchHHHHHHHH
Q 039127 49 FVIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~ 69 (162)
.+++|+|..|+|||||++.+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 588999999999999999876
No 192
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.50 E-value=0.0043 Score=43.66 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
--|+|+|.+|+|||||...+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 457799999999999999987654
No 193
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.50 E-value=0.0017 Score=47.05 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 194
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.49 E-value=0.0036 Score=48.70 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....+++|.|..|+|||||++.+....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999886543
No 195
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.48 E-value=0.00022 Score=61.95 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=55.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce---------------------------------EEEEEeCCCCC------C-
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN---------------------------------FNFALDDTWKE------K- 87 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------~LlVlDdv~~~------~- 87 (162)
...+.++|.+|+|||+||+.+++..... .++++|+++.. .
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~ 590 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 590 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCC
Confidence 3457799999999999999997653222 58889997521 0
Q ss_pred -------hhhHHHHHhhcccc--CCCcEEEEecCChh-hHhh-hC---CCCeeeCCCCCHHHHHHHHhhCC
Q 039127 88 -------YVDWTNMRDLFAAV--ASRSKVIVTTRNQG-VASI-MG---TMPAYELKKLVNDNCLLIFSQHP 144 (162)
Q Consensus 88 -------~~~~~~l~~~l~~~--~~gs~iiiTTR~~~-v~~~-~~---~~~~~~l~~L~~~~~~~lf~~~a 144 (162)
......+...+... ..+..||.||...+ +-.. .. -...+.+...+.++-..+|+.+.
T Consensus 591 ~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 591 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred CCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 01123333333321 12233455554332 2111 11 12356778888888889988764
No 196
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.48 E-value=0.0013 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999987644
No 197
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.48 E-value=0.002 Score=44.92 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-.+++|+|..|+|||||++.+..-.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3589999999999999999987654
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.47 E-value=0.002 Score=46.65 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
....++|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3678889999999999999888755
No 199
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.46 E-value=0.0043 Score=44.57 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..-|+++|.+|+|||||...+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999987653
No 200
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.46 E-value=0.0018 Score=49.26 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999999874
No 201
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.45 E-value=0.0018 Score=49.99 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...+++|+|..|+|||||++.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3569999999999999999988754
No 202
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.45 E-value=0.0077 Score=42.62 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..-|+++|.+|+|||+|.+.+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3456799999999999999877653
No 203
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.45 E-value=0.013 Score=40.73 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...|.++|..|+|||||...+.+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~ 46 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV 46 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44677999999999999999986543
No 204
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.45 E-value=0.0054 Score=44.81 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=19.3
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-|.|+|-+|+|||+|...+.+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 36699999999999999887544
No 205
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.44 E-value=0.0059 Score=41.58 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-.|.++|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457799999999999999987654
No 206
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.43 E-value=0.0018 Score=46.91 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.5
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999977543
No 207
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.43 E-value=0.0016 Score=47.63 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.8
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987643
No 208
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.43 E-value=0.0072 Score=42.36 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|.|+|..|+|||||...+.+..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34567899999999999999988654
No 209
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.42 E-value=0.009 Score=44.36 Aligned_cols=26 Identities=12% Similarity=0.325 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+++|.+|+|||||...+....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 34567899999999999999987654
No 210
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.42 E-value=0.0017 Score=47.75 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...|.|.|+.|+||||+|+.+.....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999987654
No 211
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.40 E-value=0.0035 Score=49.54 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....+.|+|+.|+||||+++.++...
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45678899999999999999887654
No 212
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.40 E-value=0.006 Score=41.50 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=19.0
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-|+++|.+|+|||||...+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 46799999999999999986543
No 213
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.40 E-value=0.009 Score=41.01 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|.++|.+|+|||||...+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34567899999999999999987654
No 214
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.40 E-value=0.002 Score=46.03 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.1
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+|+|.|..|+||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 789999999999999999877543
No 215
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.39 E-value=0.0019 Score=47.46 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45899999999999999999876543
No 216
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.38 E-value=0.018 Score=40.36 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4467899999999999999987544
No 217
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.38 E-value=0.0014 Score=49.20 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..|+|+|+.|+||||+++.+.....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3789999999999999999987554
No 218
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.38 E-value=0.0054 Score=43.19 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.--|+++|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4467899999999999999988654
No 219
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.36 E-value=0.027 Score=38.92 Aligned_cols=26 Identities=15% Similarity=0.479 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..-.|.++|.+|+|||||...+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34567899999999999999988654
No 220
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.36 E-value=0.0056 Score=51.26 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=41.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC-----ce--------------------------------------------EEEE
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT-----VN--------------------------------------------FNFA 79 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~-----~~--------------------------------------------~LlV 79 (162)
+++.|.|.+|.||||++..+..... +. -++|
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 3788999999999999887754221 10 2689
Q ss_pred EeCCCCCChhhHHHHHhhccccCCCcEEEEe
Q 039127 80 LDDTWKEKYVDWTNMRDLFAAVASRSKVIVT 110 (162)
Q Consensus 80 lDdv~~~~~~~~~~l~~~l~~~~~gs~iiiT 110 (162)
+|.+...+...+..+...++ .+.++|+.
T Consensus 285 IDEasml~~~~~~~Ll~~~~---~~~~lilv 312 (574)
T 3e1s_A 285 VDEVSMMGDALMLSLLAAVP---PGARVLLV 312 (574)
T ss_dssp ECCGGGCCHHHHHHHHTTSC---TTCEEEEE
T ss_pred EcCccCCCHHHHHHHHHhCc---CCCEEEEE
Confidence 99987666777777766654 45566654
No 221
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.35 E-value=0.0025 Score=46.01 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
....++|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999888755
No 222
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.34 E-value=0.003 Score=46.80 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
....++.+.|.||+||||++..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 34678889999999999999888743
No 223
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.33 E-value=0.0019 Score=47.10 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.0
Q ss_pred EEEEEcCCCcchHHHHHHHHccCCce
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
+|.|.|++|+||+|.|+.+.......
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 57899999999999999998776543
No 224
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.32 E-value=0.01 Score=41.48 Aligned_cols=24 Identities=17% Similarity=0.607 Sum_probs=20.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-.|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457799999999999999997654
No 225
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.32 E-value=0.0027 Score=48.84 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...+++|.|..|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999988743
No 226
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.32 E-value=0.0077 Score=42.20 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+|+|.+|+|||||...+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567899999999999999987654
No 227
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.32 E-value=0.0025 Score=45.86 Aligned_cols=23 Identities=30% Similarity=0.154 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
-.++.|+|.+|+|||||+..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999999876
No 228
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0098 Score=41.53 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..|+++|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999987654
No 229
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.0016 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999888654
No 230
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.30 E-value=0.0015 Score=47.82 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=15.8
Q ss_pred EEEEEEcCCCcchHHHHHHHH-cc
Q 039127 49 FVIPIIGMGGSGNTTPALPVY-ND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~-~~ 71 (162)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 43
No 231
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.29 E-value=0.0055 Score=42.39 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-.|+++|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999887543
No 232
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.28 E-value=0.0033 Score=49.28 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..+|.|+|+.|+|||+||..++....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 35899999999999999999998775
No 233
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.28 E-value=0.011 Score=49.64 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+..-..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcC
Confidence 5889999999999999999976543
No 234
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.27 E-value=0.0032 Score=42.60 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+.|.++|.+|+|||||...+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999987654
No 235
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.26 E-value=0.0026 Score=47.41 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=22.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|+|..|+|||||.+.+..-...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 58999999999999999999876543
No 236
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.25 E-value=0.0027 Score=49.87 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=26.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCceEEEEEeCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVNFNFALDDT 83 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~LlVlDdv 83 (162)
.+|+|.|+.|+||||||..+...... .++-.|+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~-~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNG-EIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTE-EEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCC-ceeccccc
Confidence 58999999999999999999887652 33444554
No 237
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.25 E-value=0.0024 Score=47.36 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=23.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
.+++|+|..|+|||||.+.+..-.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 488999999999999999998765443
No 238
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.24 E-value=0.0047 Score=48.46 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
....+|+|+|.+|+|||||+..+...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999887643
No 239
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.013 Score=41.23 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.-.|+|+|..|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4467899999999999999987654
No 240
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.22 E-value=0.0041 Score=42.79 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..++++|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 241
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.22 E-value=0.0029 Score=49.31 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+++.|+|+.|+||||||+.+.....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999988765
No 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.22 E-value=0.003 Score=45.65 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.++.|.|.+|+|||||++.+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58889999999999999988743
No 243
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.21 E-value=0.0025 Score=46.85 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=22.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|+|..|+|||||.+.+..-...
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48899999999999999999876543
No 244
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.21 E-value=0.0024 Score=45.84 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=19.3
Q ss_pred EEEEEcCCCcchHHHHHHHHcc
Q 039127 50 VIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6789999999999999888754
No 245
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.21 E-value=0.0034 Score=48.36 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...+++|+|..|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887653
No 246
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.20 E-value=0.0061 Score=43.54 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.-.|+++|.+|+|||||...+.+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3456799999999999998887543
No 247
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.19 E-value=0.0034 Score=44.45 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...++|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578899999999999999987654
No 248
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.18 E-value=0.023 Score=38.82 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.-.|+++|.+|+|||||...+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3467899999999999999987654
No 249
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.18 E-value=0.0029 Score=48.57 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...++.++|.+|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999887643
No 250
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.18 E-value=0.0026 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.0
Q ss_pred EEEEEcCCCcchHHHHHHHHcc
Q 039127 50 VIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
+++|+|..|+|||||.+.+..-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8899999999999999988754
No 251
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.18 E-value=0.0054 Score=42.78 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
....|+++|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999999874
No 252
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.17 E-value=0.0027 Score=47.23 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..+++|.|++|+||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999976543
No 253
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.17 E-value=0.023 Score=40.01 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+++|.+|+|||+|...+....
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCC
Confidence 4557899999999999999986543
No 254
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.14 E-value=0.0043 Score=48.41 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....+++|+|..|+||||+++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999998887543
No 255
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.14 E-value=0.007 Score=42.52 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..-|.++|..|+|||+|...+.+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999987653
No 256
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.14 E-value=0.0034 Score=45.84 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=20.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
.++.|+|.+|+|||||+..+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 5889999999999999998876
No 257
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.13 E-value=0.0028 Score=44.44 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.3
Q ss_pred EEEEEcCCCcchHHHHHHHHcc
Q 039127 50 VIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999998763
No 258
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.13 E-value=0.0044 Score=47.87 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....++.|+|.+|+||||++..++...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 346799999999999999998877543
No 259
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.12 E-value=0.013 Score=41.45 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+++|.+|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34567899999999999999987654
No 260
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.12 E-value=0.0032 Score=44.69 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.+++.|.|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999888764
No 261
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.12 E-value=0.0031 Score=46.83 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=21.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.+..-..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4889999999999999999976553
No 262
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.11 E-value=0.0036 Score=42.34 Aligned_cols=23 Identities=17% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.|.++|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47799999999999999987654
No 263
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.11 E-value=0.0058 Score=49.53 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.2
Q ss_pred EEEEEcCCCcchHHHHHHHHc
Q 039127 50 VIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~ 70 (162)
.+.|.|.+|+|||+++..+..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 788999999999999877653
No 264
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.11 E-value=0.015 Score=39.53 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
--|+++|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999864
No 265
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.10 E-value=0.012 Score=41.95 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.--|+++|.+|+|||+|...+.+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4457899999999999999887543
No 266
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.10 E-value=0.025 Score=38.78 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+++|.+|+|||||...+.+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567899999999999999987543
No 267
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.09 E-value=0.0037 Score=46.08 Aligned_cols=26 Identities=15% Similarity=-0.037 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...|+|.|..|+||||+++.+.....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988763
No 268
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.09 E-value=0.0051 Score=41.81 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.-.|.++|.+|+|||||...+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4457799999999999999987643
No 269
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.09 E-value=0.0031 Score=47.52 Aligned_cols=26 Identities=35% Similarity=0.270 Sum_probs=22.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|+|..|+|||||.+.+..-...
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48899999999999999999876543
No 270
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.08 E-value=0.0037 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.+++|+|..|+|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999985
No 271
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.08 E-value=0.011 Score=49.33 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+..-..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 4889999999999999998865543
No 272
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.07 E-value=0.0032 Score=47.88 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||.+.+..-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 488999999999999999997644
No 273
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.07 E-value=0.0037 Score=46.00 Aligned_cols=27 Identities=30% Similarity=0.186 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....+|+|.|+.|+||||+++.+....
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999887643
No 274
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.06 E-value=0.0043 Score=47.35 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=20.7
Q ss_pred CCCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 45 DGGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 45 ~~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
....++|+|+|-||+||||+|..+...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHH
Confidence 345788889999999999988766543
No 275
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.06 E-value=0.0034 Score=46.65 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=22.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|+|..|+|||||.+.++.-.+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48899999999999999999876543
No 276
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.06 E-value=0.0036 Score=44.49 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...++|+|..|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567899999999999999987653
No 277
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.05 E-value=0.024 Score=44.96 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=38.7
Q ss_pred EEEEcCCCcchHHHHHHHHccCCce---------------------------------------------EEEEEeCCCC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDKTVN---------------------------------------------FNFALDDTWK 85 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~~~~---------------------------------------------~LlVlDdv~~ 85 (162)
+.|.|..|+|||++|+.++...... =.|+||++..
T Consensus 163 vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~ 242 (387)
T 1ny5_A 163 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGE 242 (387)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGG
T ss_pred eEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhh
Confidence 3799999999999999987543211 2678999988
Q ss_pred CChhhHHHHHhhccc
Q 039127 86 EKYVDWTNMRDLFAA 100 (162)
Q Consensus 86 ~~~~~~~~l~~~l~~ 100 (162)
.+......|...+..
T Consensus 243 l~~~~q~~Ll~~l~~ 257 (387)
T 1ny5_A 243 LSLEAQAKLLRVIES 257 (387)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 788888888877653
No 278
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.05 E-value=0.0038 Score=46.47 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=22.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.+..-..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999987654
No 279
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.05 E-value=0.0041 Score=45.85 Aligned_cols=27 Identities=33% Similarity=0.278 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.-..|+|.|+.|+||||+++.+.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346889999999999999999887654
No 280
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.05 E-value=0.0034 Score=46.08 Aligned_cols=26 Identities=31% Similarity=0.147 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..-.+++|.|..|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34578999999999999999998876
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.05 E-value=0.0034 Score=47.12 Aligned_cols=26 Identities=31% Similarity=0.208 Sum_probs=22.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|+|..|+|||||.+.+..-...
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48899999999999999999876553
No 282
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.04 E-value=0.0034 Score=47.48 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||++.+..-.+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4889999999999999999986543
No 283
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.04 E-value=0.0064 Score=42.53 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+++|.+|+|||||...+.+..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999998664
No 284
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.03 E-value=0.015 Score=39.29 Aligned_cols=24 Identities=17% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-.|+++|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999998887543
No 285
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.03 E-value=0.002 Score=49.33 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=23.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC---ce-EEEEEeCCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT---VN-FNFALDDTW 84 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~---~~-~LlVlDdv~ 84 (162)
..+|+|.|..|+||||+|+.+..... .. ..+-.|++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 45899999999999999999876432 11 344456654
No 286
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.03 E-value=0.004 Score=47.07 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.+++|+|..|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999986
No 287
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.02 E-value=0.026 Score=47.17 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..++|+|..|+|||||++.+..-.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 488999999999999999986543
No 288
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.01 E-value=0.0043 Score=48.44 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
+++.|+|++|+|||+||.++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999998875
No 289
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.01 E-value=0.025 Score=38.15 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..-|.++|.+|+|||||...+.+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3457799999999999999987654
No 290
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0085 Score=42.76 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+++|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3467899999999999999987654
No 291
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.045 Score=39.60 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
..-|+|+|.+|+|||+|...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999999874
No 292
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.00 E-value=0.0037 Score=47.25 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=22.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.+..-.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4889999999999999999987654
No 293
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.00 E-value=0.015 Score=48.73 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+..-..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4889999999999999999876543
No 294
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.00 E-value=0.0038 Score=46.09 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=22.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.+..-.+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4889999999999999999987654
No 295
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.00 E-value=0.0041 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=20.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.+++|.|.+|+|||||++.+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 48899999999999999887654
No 296
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.99 E-value=0.0046 Score=48.07 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.++++|.|+.|+|||+||..++....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35789999999999999999987654
No 297
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.99 E-value=0.0038 Score=46.66 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=22.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|+|..|+|||||.+.+..-...
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48899999999999999999876543
No 298
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.96 E-value=0.0048 Score=48.77 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...+++|+|..|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999887653
No 299
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.95 E-value=0.0045 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
.++.|+|.+|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4889999999999999988763
No 300
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.0077 Score=42.20 Aligned_cols=26 Identities=27% Similarity=0.111 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+++|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34577899999999999999987654
No 301
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.94 E-value=0.004 Score=47.16 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=22.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|+|..|+|||||.+.++.-...
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48899999999999999999876543
No 302
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.94 E-value=0.0041 Score=46.80 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.++.-.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4889999999999999999976543
No 303
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.94 E-value=0.0041 Score=46.81 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.+..-..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 4889999999999999999987654
No 304
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.93 E-value=0.025 Score=43.75 Aligned_cols=96 Identities=6% Similarity=-0.134 Sum_probs=62.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC-----Cc----e-----------------------EEEEEeCCCC-CChhhHHHH
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK-----TV----N-----------------------FNFALDDTWK-EKYVDWTNM 94 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~-----~~----~-----------------------~LlVlDdv~~-~~~~~~~~l 94 (162)
.+++.++|..|.||++.+..+.+.. .. . -++|+|+++. .+...++.|
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aL 97 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQL 97 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHH
Confidence 4577788888888877766653311 00 0 5899999986 566788888
Q ss_pred HhhccccCCCcEEEEecCC-------hhhHhhh-CCCCeeeCCCCCHHHHHHHHhhC
Q 039127 95 RDLFAAVASRSKVIVTTRN-------QGVASIM-GTMPAYELKKLVNDNCLLIFSQH 143 (162)
Q Consensus 95 ~~~l~~~~~gs~iiiTTR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 143 (162)
...+..-.+++.+|+++-. ..+...+ .....++..+++.++....+.+.
T Consensus 98 l~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 98 LTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp HHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred HHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 8888765567766665532 2333333 33347888889887777555543
No 305
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.92 E-value=0.003 Score=47.22 Aligned_cols=27 Identities=19% Similarity=-0.024 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
....|+|.|..|+||||+|+.+.....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999988763
No 306
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.92 E-value=0.0034 Score=45.99 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=22.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|+|..|+|||||.+.++.-.+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 37899999999999999999876543
No 307
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.91 E-value=0.005 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
-.+++|+|..|+|||||.+.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 46899999999999999988754
No 308
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.91 E-value=0.0083 Score=43.68 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+.+.|.|..|+|||+||..+..+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5688999999999999999988764
No 309
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.90 E-value=0.0064 Score=47.21 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
....++.++|.+|+||||++..++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999877654
No 310
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.90 E-value=0.0044 Score=46.80 Aligned_cols=26 Identities=23% Similarity=0.109 Sum_probs=22.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|+|..|+|||||.+.++.-...
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 48899999999999999999876543
No 311
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.89 E-value=0.0056 Score=43.93 Aligned_cols=26 Identities=27% Similarity=0.111 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|.++|.+|+|||||...+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45577899999999999999987654
No 312
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.88 E-value=0.0062 Score=42.74 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+++|.+|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678899999999999999998764
No 313
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.88 E-value=0.01 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
...++.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999877764
No 314
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.87 E-value=0.0045 Score=47.16 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=22.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
.+++|+|..|+|||||.+.++.-.+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 38899999999999999999876543
No 315
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.87 E-value=0.0046 Score=46.33 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.+..-..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3789999999999999999986543
No 316
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.86 E-value=0.027 Score=39.67 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+|+|.+|+|||||...+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34567899999999999999987554
No 317
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.85 E-value=0.0058 Score=41.63 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=20.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-.|.++|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 356799999999999999997643
No 318
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.85 E-value=0.0059 Score=47.21 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..++++|.|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999998654
No 319
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.85 E-value=0.0065 Score=42.42 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+++|..|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34567899999999999999998765
No 320
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.85 E-value=0.0047 Score=46.32 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999987654
No 321
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.83 E-value=0.0054 Score=47.39 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-..++|+|..|+|||||++.+..-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 358899999999999999988643
No 322
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.83 E-value=0.006 Score=45.47 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=18.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
++|+|.|-||+||||+|..+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~ 24 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG 24 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHH
Confidence 57778899999999998776543
No 323
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.83 E-value=0.0056 Score=41.63 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=19.6
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-|.++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999887554
No 324
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.83 E-value=0.0056 Score=41.56 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-|+++|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47799999999999999987643
No 325
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.83 E-value=0.0077 Score=41.47 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|.++|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 35567899999999999999887654
No 326
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.82 E-value=0.0054 Score=47.58 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++.|.|+.|+|||+||..++....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46889999999999999999987664
No 327
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.82 E-value=0.028 Score=38.73 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|.++|.+|+|||||...+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4567899999999999999987654
No 328
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.81 E-value=0.0082 Score=41.28 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+++|..|+|||||...+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 45678899999999999999987653
No 329
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.81 E-value=0.0066 Score=49.11 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.0
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHc
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
...++|.++|.+|+||||++..+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999998877763
No 330
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.81 E-value=0.026 Score=39.02 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|.++|.+|+|||||...+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567899999999999999987554
No 331
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.81 E-value=0.026 Score=38.10 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=18.4
Q ss_pred EEEEcCCCcchHHHHHHHHcc
Q 039127 51 IPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~ 71 (162)
|+++|.+|+|||+|...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999998643
No 332
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.80 E-value=0.01 Score=42.99 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=26.9
Q ss_pred EEEEEeCCCC---CChhhHHHHHhhccccCCCcEEEEecCChh
Q 039127 76 FNFALDDTWK---EKYVDWTNMRDLFAAVASRSKVIVTTRNQG 115 (162)
Q Consensus 76 ~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iiiTTR~~~ 115 (162)
=|+|||++.. ...-..+.+...+........+|+|+|+..
T Consensus 122 DlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 122 DMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp SEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred CEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 5899998731 123344556666666666778999999963
No 333
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.80 E-value=0.0053 Score=44.81 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=18.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
.++.|.|.+|+||||||..+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4888999999999999877653
No 334
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.79 E-value=0.0059 Score=41.65 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.-.|.++|.+|+|||||...+.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3457899999999999999987553
No 335
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.78 E-value=0.0055 Score=46.39 Aligned_cols=22 Identities=23% Similarity=0.464 Sum_probs=19.4
Q ss_pred EEEEEcCCCcchHHHHHHHHcc
Q 039127 50 VIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.++|+|..|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998753
No 336
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.77 E-value=0.01 Score=40.78 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.--|+++|.+|+|||||...+.+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 4457799999999999999887543
No 337
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.77 E-value=0.012 Score=40.79 Aligned_cols=24 Identities=13% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-.|+++|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357799999999999999997654
No 338
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.76 E-value=0.0082 Score=41.70 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=20.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998653
No 339
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.75 E-value=0.045 Score=38.09 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...|+++|.+|+|||||...+...
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999998644
No 340
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.75 E-value=0.0065 Score=42.30 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.0
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.|+++|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 46799999999999999988754
No 341
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.75 E-value=0.0059 Score=50.26 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...+++|+|..|+|||||++.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999887543
No 342
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.74 E-value=0.0065 Score=50.25 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..+|.++|++|+||||+|+.+...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468889999999999999998654
No 343
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.73 E-value=0.0068 Score=42.35 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.--|+++|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 345779999999999999877643
No 344
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.72 E-value=0.006 Score=48.52 Aligned_cols=26 Identities=23% Similarity=-0.054 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....++|+|+.|+|||||++.+....
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34688999999999999999987543
No 345
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.71 E-value=0.0079 Score=43.34 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCcchHHHHHHH
Q 039127 48 FFVIPIIGMGGSGNTTPALPV 68 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~ 68 (162)
.-.|+++|.+|+|||||...+
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~ 35 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRH 35 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTB
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 345789999999999999883
No 346
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.70 E-value=0.0081 Score=42.19 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45677889999999999999998754
No 347
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.70 E-value=0.034 Score=38.30 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.--|+++|.+|+|||||...+.+..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3457899999999999998887543
No 348
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.70 E-value=0.0071 Score=46.33 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...+++++|.+|+||||++..++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999998876543
No 349
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.69 E-value=0.0069 Score=41.17 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.-.|+++|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999998754
No 350
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.68 E-value=0.036 Score=39.05 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..-|+|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999987654
No 351
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.68 E-value=0.0074 Score=45.63 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=19.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.++|+|.|-||+||||+|..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH
Confidence 367888899999999998776544
No 352
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.67 E-value=0.0069 Score=42.57 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.--|+|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4467799999999999998776543
No 353
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.67 E-value=0.0098 Score=40.45 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-.|+++|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 457899999999999999987544
No 354
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.66 E-value=0.012 Score=47.54 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=29.9
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCc---eEEEEEeCCCCCChhhHHHH
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTV---NFNFALDDTWKEKYVDWTNM 94 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~---~~LlVlDdv~~~~~~~~~~l 94 (162)
...++.++|.+|+||||++..+...... +.++|==|.. ....++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~--r~~a~eqL 144 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY--RPAAYDQL 144 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS--CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc--chhHHHHH
Confidence 4689999999999999998877644322 2444333454 44444443
No 355
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.64 E-value=0.0063 Score=45.95 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=21.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||.+.++.-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998765
No 356
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.64 E-value=0.0059 Score=42.18 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.--|+++|.+|+|||+|...+.+..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3457799999999999999987643
No 357
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.63 E-value=0.013 Score=41.77 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=26.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCceEEEEEeCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVNFNFALDDT 83 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~LlVlDdv 83 (162)
.-+.|.|.+|+||||||..+..+- +-+|=||.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG---~~lvaDD~ 48 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG---HQLVCDDV 48 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT---CEEEESSE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC---CeEecCCE
Confidence 467799999999999999998865 66777775
No 358
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.035 Score=39.61 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...|+++|.+|+|||||...+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988654
No 359
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.61 E-value=0.0065 Score=44.41 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=17.9
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
|+|.|-||+||||+|..+....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~l 24 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIM 24 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 5668999999999998776543
No 360
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.61 E-value=0.0072 Score=47.46 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...++|+|..|+|||||++.+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999998876544
No 361
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.61 E-value=0.028 Score=46.38 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=27.5
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccC---CceEEEEEeCCC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDK---TVNFNFALDDTW 84 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~---~~~~LlVlDdv~ 84 (162)
....+|.|+|.+|+||||++..+.... ..+.++|=.|..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 456799999999999999998887432 222666666665
No 362
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.59 E-value=0.0076 Score=42.51 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..|+++|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999998864
No 363
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.58 E-value=0.0082 Score=47.10 Aligned_cols=26 Identities=23% Similarity=0.120 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.-.++.|+|..|+|||||+..+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999887543
No 364
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.58 E-value=0.0079 Score=41.29 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-.|+++|..|+|||||...+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998754
No 365
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.57 E-value=0.0076 Score=47.63 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=21.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||.+.+..-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 488999999999999999997543
No 366
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.57 E-value=0.008 Score=41.81 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...|+|+|.+|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998753
No 367
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.56 E-value=0.0086 Score=41.90 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.0
Q ss_pred EEEEEcCCCcchHHHHHHHHc
Q 039127 50 VIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~ 70 (162)
+.+|+|..|+|||||+.+++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999864
No 368
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.55 E-value=0.0051 Score=49.78 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...+|.++|.+|+||||++..+....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999998877643
No 369
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.54 E-value=0.0082 Score=41.42 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|.++|.+|+|||||...+....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3457899999999999999987543
No 370
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.54 E-value=0.011 Score=41.43 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.--|+++|.+|+|||+|...+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4467799999999999998887544
No 371
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.54 E-value=0.01 Score=43.05 Aligned_cols=26 Identities=15% Similarity=0.011 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+++|.+|+|||||...+....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999987653
No 372
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.54 E-value=0.0082 Score=42.11 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..-|+|+|..|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567899999999999999887643
No 373
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.51 E-value=0.0097 Score=41.17 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+++|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4567899999999999999988543
No 374
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.031 Score=39.08 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..-|+++|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 345779999999999999998754
No 375
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.50 E-value=0.012 Score=43.09 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
....|+|+|.+|+|||||...+.....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 456788999999999999999886543
No 376
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.50 E-value=0.0079 Score=48.93 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..+|.++|++|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999998765
No 377
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.49 E-value=0.0067 Score=43.76 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368899999999999999887654
No 378
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.49 E-value=0.0076 Score=46.16 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.+..-..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4889999999999999999976554
No 379
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0089 Score=41.19 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.-.|+++|.+|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4467899999999999999987544
No 380
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.48 E-value=0.012 Score=41.60 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35567899999999999999987654
No 381
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.47 E-value=0.011 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
...+++|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999875
No 382
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.47 E-value=0.05 Score=38.53 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+|+|.+|+|||||...+.+..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC
Confidence 34567899999999999999987544
No 383
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.46 E-value=0.0094 Score=42.36 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=19.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..|+++|.+|+|||||...+.+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998753
No 384
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.46 E-value=0.0089 Score=47.15 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.++.-..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4889999999999999999976543
No 385
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.0087 Score=42.22 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.--|+++|.+|+|||||...+.+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3457799999999999999987653
No 386
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.44 E-value=0.0094 Score=42.59 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+++|.+|+|||||...+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999987654
No 387
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.42 E-value=0.0092 Score=47.28 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.+..-.+
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 4889999999999999999976543
No 388
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.42 E-value=0.0097 Score=49.17 Aligned_cols=28 Identities=7% Similarity=-0.094 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
...+|.+.|+.|+||||+|+.+......
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3478889999999999999999988653
No 389
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.41 E-value=0.0073 Score=50.35 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-.++.|+|+.|+|||||++.+....
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 390
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.40 E-value=0.0087 Score=48.04 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999876543
No 391
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.39 E-value=0.0054 Score=43.70 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...++|+|..|+|||||.+.+....
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999887654
No 392
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.38 E-value=0.0097 Score=46.99 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.++.-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 4889999999999999999976543
No 393
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.38 E-value=0.01 Score=41.95 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.--|.++|.+|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4457799999999999999887654
No 394
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.37 E-value=0.0097 Score=47.39 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.+..-..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4889999999999999999976554
No 395
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.37 E-value=0.013 Score=43.39 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=17.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-.|.+.|.||+||||+|..+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 34668899999999997666543
No 396
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.37 E-value=0.021 Score=40.95 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-.+..++|..|.||||.+....++.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4688999999999999886665443
No 397
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.37 E-value=0.01 Score=42.12 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.9
Q ss_pred CeEEEEEEcCCCcchHHHHHHHH
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~ 69 (162)
....|+++|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35567899999999999999985
No 398
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.35 E-value=0.01 Score=47.12 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.+++|+|..|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 48899999999999999998643
No 399
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.35 E-value=0.015 Score=40.63 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.-.|+++|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345779999999999999998765
No 400
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.35 E-value=0.012 Score=45.17 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+|+|.+|+|||||...+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 35689999999999999999987653
No 401
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.35 E-value=0.01 Score=46.96 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.++.-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 4889999999999999999976543
No 402
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.34 E-value=0.026 Score=39.63 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|.++|..|+|||||...+.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999987554
No 403
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.34 E-value=0.01 Score=42.02 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
.--|+|+|.+|+|||+|...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999998874
No 404
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.34 E-value=0.0094 Score=45.77 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..++.++|.+|+||||++..+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6788999999999999998876443
No 405
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.32 E-value=0.011 Score=41.55 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.--|.++|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4457799999999999999987554
No 406
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.32 E-value=0.0095 Score=44.18 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
-..++|.|++|+||||+|+.+.....
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999877654
No 407
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.31 E-value=0.01 Score=47.03 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.++.-..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 4889999999999999999976543
No 408
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.30 E-value=0.014 Score=40.64 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+++|.+|+|||||...+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999988654
No 409
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.30 E-value=0.0087 Score=47.05 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=21.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.++.-..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 4889999999999999999976543
No 410
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.29 E-value=0.011 Score=42.00 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.--|+|+|.+|+|||||...+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC--
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4567899999999999999887543
No 411
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.29 E-value=0.012 Score=49.84 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...+|.+.|+.|+||||+|+.+....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998764
No 412
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.28 E-value=0.013 Score=45.71 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
...+++|+|.+|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 413
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.28 E-value=0.015 Score=44.70 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=24.0
Q ss_pred CCCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 45 DGGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 45 ~~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+....|+|+|.+|+|||||...+....
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3567899999999999999999987654
No 414
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.27 E-value=0.012 Score=49.32 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
...+|.|.|+.|+||||+|+.+.....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999987643
No 415
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.25 E-value=0.012 Score=43.04 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-..|++.|+.|+||||+++.+....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999987654
No 416
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.24 E-value=0.015 Score=43.60 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+++|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999998654
No 417
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.23 E-value=0.015 Score=42.92 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
....|++.|..|+||||+++.+.+....
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578899999999999999998765443
No 418
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.22 E-value=0.012 Score=41.79 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|.++|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999987543
No 419
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.22 E-value=0.008 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=20.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||.+.++.-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 488999999999999999987543
No 420
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.22 E-value=0.014 Score=45.57 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
+..+++|+|.+|+|||||+..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999988864
No 421
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.21 E-value=0.013 Score=46.24 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=26.3
Q ss_pred HHHHhhc-CCCCCCCCCeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 32 TVELVLK-DDSETIDGGFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 32 i~~~l~~-~~~~~~~~~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-++.++. .. -+.-+++.|.|.+|+||||||..+...
T Consensus 48 ~LD~~Lg~GG----i~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 48 AIDIATGVGG----YPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp HHHHHTSSSS----EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCC----ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3566665 32 123468999999999999999888654
No 422
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.21 E-value=0.017 Score=40.36 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|.++|..|+|||||...+....
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567899999999999999987543
No 423
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.21 E-value=0.012 Score=42.34 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.-.|+++|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999998754
No 424
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.20 E-value=0.015 Score=41.13 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+|+|.+|+|||||...+....
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 4567899999999999999987554
No 425
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.16 E-value=0.016 Score=47.07 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=25.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCceEEEEEe
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVNFNFALD 81 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~LlVlD 81 (162)
.+-+.++|++|+|||++|+.++......+ +.+|
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~-~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPF-IKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCE-EEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCc-eeec
Confidence 34578999999999999999988765543 4455
No 426
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.15 E-value=0.0099 Score=42.70 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 35577899999999999999998775
No 427
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.14 E-value=0.011 Score=45.44 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=18.0
Q ss_pred EEEEcCCCcchHHHHHHHHcc
Q 039127 51 IPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~ 71 (162)
|+|+|..|+|||||.+.++..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 489999999999999997653
No 428
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.14 E-value=0.013 Score=42.82 Aligned_cols=22 Identities=27% Similarity=0.224 Sum_probs=18.7
Q ss_pred eEEEEEEcCCCcchHHHHHHHH
Q 039127 48 FFVIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~ 69 (162)
-.++.|.|.+|+|||+||..+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 3588899999999999997754
No 429
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=95.12 E-value=0.078 Score=41.01 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEEcCCCcchHHHHHHHHccC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.|+|+|.+|+|||||...+....
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~ 189 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE 189 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC
T ss_pred eEEEECCCCccHHHHHHHHhCCC
Confidence 57899999999999999987654
No 430
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.12 E-value=0.012 Score=46.30 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=26.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCce-EEEEEeCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTVN-FNFALDDT 83 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-~LlVlDdv 83 (162)
..++|+|..|+|||||++.+....... -.+.+||.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV 211 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence 488899999999999999998765432 33444554
No 431
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.11 E-value=0.039 Score=50.48 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+..-..
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cEEEEEecCCCcHHHHHHHhccccc
Confidence 4889999999999999999976554
No 432
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.11 E-value=0.013 Score=41.54 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4567899999999999999987543
No 433
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.10 E-value=0.013 Score=46.76 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++|+|..|+|||||.+.+..-..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 4889999999999999999986543
No 434
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.10 E-value=0.014 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
-.+++|+|..|+|||||++.+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999988764
No 435
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.09 E-value=0.018 Score=42.69 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578899999999999999987543
No 436
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.09 E-value=0.014 Score=42.04 Aligned_cols=28 Identities=21% Similarity=0.130 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
..+|+|.|+.|+||||+|+.+.......
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~ 33 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIP 33 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 3589999999999999999998876544
No 437
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.08 E-value=0.056 Score=49.33 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+..-..
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4889999999999999999865543
No 438
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.08 E-value=0.014 Score=41.40 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+++|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3467899999999999999987643
No 439
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.07 E-value=0.012 Score=46.21 Aligned_cols=23 Identities=43% Similarity=0.326 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
-+++.|+|.+|+||||||..+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999988764
No 440
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.07 E-value=0.015 Score=41.58 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.-.|.|+|..|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4457899999999999999987643
No 441
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.03 E-value=0.0097 Score=41.68 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+++|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467799999999999999987665
No 442
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.99 E-value=0.021 Score=43.78 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+|+|.+|+|||||...+....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45679999999999999999987653
No 443
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.96 E-value=0.0081 Score=41.65 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=10.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+++|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEEEECCCCC-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4567899999999999998886543
No 444
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.94 E-value=0.012 Score=43.38 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=18.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
-..|++.|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999887654
No 445
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.93 E-value=0.018 Score=46.54 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...++.++|.+|+||||++..+....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998876543
No 446
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.92 E-value=0.016 Score=41.06 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=17.9
Q ss_pred EEEEEE-cCCCcchHHHHHHHHcc
Q 039127 49 FVIPII-GMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~-G~gGiGKTtLa~~~~~~ 71 (162)
++|+|+ +-||+||||+|..+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~ 25 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA 25 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH
Confidence 577888 57999999998776543
No 447
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.92 E-value=0.036 Score=41.48 Aligned_cols=26 Identities=19% Similarity=0.520 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+++|.+|+|||||...+.+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678899999999999999998765
No 448
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.91 E-value=0.069 Score=47.20 Aligned_cols=21 Identities=19% Similarity=0.071 Sum_probs=19.3
Q ss_pred eEEEEEEcCCCcchHHHHHHH
Q 039127 48 FFVIPIIGMGGSGNTTPALPV 68 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~ 68 (162)
-.+++|.|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999988
No 449
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.86 E-value=0.034 Score=42.30 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+++|.+|+|||||...+.+..
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~ 179 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNA 179 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCChHHHHHHHHhCC
Confidence 3467799999999999998887543
No 450
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.86 E-value=0.05 Score=49.63 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+..-..
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4789999999999999999976543
No 451
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.86 E-value=0.021 Score=41.67 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=19.3
Q ss_pred CeEEEEEEc-CCCcchHHHHHHHHcc
Q 039127 47 GFFVIPIIG-MGGSGNTTPALPVYND 71 (162)
Q Consensus 47 ~~~vv~I~G-~gGiGKTtLa~~~~~~ 71 (162)
..++|++++ -||+||||+|..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~ 28 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFA 28 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHH
Confidence 357888885 6999999998776543
No 452
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.84 E-value=0.017 Score=46.25 Aligned_cols=22 Identities=9% Similarity=0.042 Sum_probs=19.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHH
Q 039127 48 FFVIPIIGMGGSGNTTPALPVY 69 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~ 69 (162)
-.++.|+|.+|+|||||+..++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHH
Confidence 3588999999999999999664
No 453
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.83 E-value=0.016 Score=45.44 Aligned_cols=35 Identities=23% Similarity=0.146 Sum_probs=26.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce-EEEEEeC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN-FNFALDD 82 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~LlVlDd 82 (162)
-.+++|+|..|+|||||.+.+.+..... ..+.+++
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G 106 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIG 106 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEec
Confidence 3589999999999999999998876544 3344444
No 454
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.013 Score=47.81 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||++.+..-.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 478999999999999999987654
No 455
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.82 E-value=0.039 Score=41.10 Aligned_cols=26 Identities=15% Similarity=0.475 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....|+++|..|+|||||...+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999998765
No 456
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.82 E-value=0.018 Score=42.80 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+|.|+.|+||||+++.+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999886654
No 457
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.79 E-value=0.024 Score=44.64 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=21.3
Q ss_pred CCCeEEEEEEc-CCCcchHHHHHHHHcc
Q 039127 45 DGGFFVIPIIG-MGGSGNTTPALPVYND 71 (162)
Q Consensus 45 ~~~~~vv~I~G-~gGiGKTtLa~~~~~~ 71 (162)
....++|+|++ -||+||||+|..+...
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~ 167 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIA 167 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 35678999986 8999999988776543
No 458
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.79 E-value=0.021 Score=41.41 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..|+|-|.-|+||||+++.+....
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999998887654
No 459
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.78 E-value=0.021 Score=45.04 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=21.5
Q ss_pred EEEEEcCCCcchHHHHHHHHccCC
Q 039127 50 VIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 50 vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
+++|+|..|+|||||.+.+.....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 789999999999999999987654
No 460
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.76 E-value=0.057 Score=43.64 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...|+|+|.+|+|||||...+...
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999998654
No 461
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.75 E-value=0.012 Score=45.73 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=21.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+.....
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3789999999999999999876543
No 462
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.73 E-value=0.02 Score=42.63 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=20.0
Q ss_pred CeEEEEEEc-CCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIG-MGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G-~gGiGKTtLa~~~~~~~ 72 (162)
..++|+|++ -||+||||+|..+....
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~l 52 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLL 52 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHH
Confidence 467888875 79999999987765443
No 463
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.73 E-value=0.023 Score=43.57 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++++|..|+|||||.+.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 478999999999999999988 54
No 464
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.71 E-value=0.017 Score=45.49 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-+++.|.|.+|+||||||..+...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358889999999999999887643
No 465
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.69 E-value=0.0093 Score=42.21 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..-.|+++|..|+|||||...+....
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999998876544
No 466
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.68 E-value=0.022 Score=44.45 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.-.++.|+|.+|+|||+||..+...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999887754
No 467
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.68 E-value=0.022 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
-.++.|+|.+|+|||+||..+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999988774
No 468
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.67 E-value=0.033 Score=44.81 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=26.4
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCc---eEEEEEeCCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTV---NFNFALDDTW 84 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~---~~LlVlDdv~ 84 (162)
-.++.|+|..|+|||||.+.+...... +++++=|++.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 206 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence 458999999999999999988654322 2444445553
No 469
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.66 E-value=0.018 Score=46.49 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..++|+|..|+|||||.+.++..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCc
Confidence 33899999999999999999764
No 470
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.65 E-value=0.027 Score=40.92 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
...+|+|+|++|+||+++|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999988765
No 471
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.02 Score=41.26 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.--|+|+|.+|+|||||...+.+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4467899999999999999987654
No 472
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.65 E-value=0.021 Score=44.01 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-.++.|.|.+|+|||+||..+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 358889999999999999887643
No 473
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.65 E-value=0.019 Score=40.95 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.1
Q ss_pred EEEEcCCCcchHHHHHHHHcc
Q 039127 51 IPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~ 71 (162)
+.|+|.+|+|||++|..+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 578999999999999999876
No 474
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.60 E-value=0.017 Score=42.39 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCCc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKTV 74 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~~ 74 (162)
..|++.|..|+||||+++.+.+....
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57889999999999999999877653
No 475
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.58 E-value=0.025 Score=45.50 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
..+++|+|..|+|||||.+.+...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999873
No 476
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.56 E-value=0.02 Score=44.28 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-.++.|+|.+|+|||+||..+...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHH
Confidence 358889999999999999888754
No 477
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.52 E-value=0.024 Score=44.46 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=19.8
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
..+++.+.|.||+||||+|..+..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Confidence 457888899999999999877653
No 478
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.52 E-value=0.023 Score=41.44 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
..|++.|..|+||||+++.+....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999998887654
No 479
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.51 E-value=0.025 Score=42.29 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=20.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
+.|+++|.+|+|||||...+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 468899999999999999998663
No 480
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.51 E-value=0.028 Score=42.46 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCcchHHHHHHHHcc
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356889999999999999999864
No 481
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.49 E-value=0.049 Score=41.33 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.....|+|+|..|+|||||...+....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 456789999999999999999997654
No 482
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.48 E-value=0.024 Score=43.39 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
.+++++|..|+|||||.+.+.....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4789999999999999999886553
No 483
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.47 E-value=0.024 Score=40.89 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=15.8
Q ss_pred EEEEE-cCCCcchHHHHHHHH
Q 039127 50 VIPII-GMGGSGNTTPALPVY 69 (162)
Q Consensus 50 vv~I~-G~gGiGKTtLa~~~~ 69 (162)
+|+++ +-||+||||+|..+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA 22 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLS 22 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHH
Confidence 56665 579999999887765
No 484
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.46 E-value=0.027 Score=46.75 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=21.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||++.++.-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999998654
No 485
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.45 E-value=0.032 Score=41.71 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
...|+++|.+|+|||||...+....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 4568899999999999999997643
No 486
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.44 E-value=0.023 Score=47.12 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
.+++|+|..|+|||||++.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4889999999999999998764
No 487
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.44 E-value=0.024 Score=44.77 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccCC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++++|+|.+|+|||||...+.....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 456799999999999999999987653
No 488
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.42 E-value=0.029 Score=44.28 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=19.0
Q ss_pred CCeEEEEEEcCCCcchHHHHHHH
Q 039127 46 GGFFVIPIIGMGGSGNTTPALPV 68 (162)
Q Consensus 46 ~~~~vv~I~G~gGiGKTtLa~~~ 68 (162)
.....|.|.|.||+||||+++.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 34556779999999999999875
No 489
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.41 E-value=0.025 Score=46.99 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||++.++.-.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999997654
No 490
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.41 E-value=0.022 Score=42.83 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=18.9
Q ss_pred EEEEEEcCCCcchHHHHHHHHc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYN 70 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~ 70 (162)
-.|+++|.+|+|||||...++.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999988754
No 491
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.39 E-value=0.023 Score=45.95 Aligned_cols=36 Identities=8% Similarity=-0.042 Sum_probs=27.2
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce-EEEEEeCC
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN-FNFALDDT 83 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~LlVlDdv 83 (162)
-..++|+|..|+|||||.+.+.+..... --+.+++.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 3588999999999999999998766544 33444543
No 492
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.38 E-value=0.024 Score=45.66 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEEcCCCcchHHHHHHHHccC
Q 039127 51 IPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 51 v~I~G~gGiGKTtLa~~~~~~~ 72 (162)
|+|+|..|+|||||.+.++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 4899999999999999998653
No 493
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=94.32 E-value=0.032 Score=41.05 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=17.8
Q ss_pred EEEEEEc-CCCcchHHHHHHHHcc
Q 039127 49 FVIPIIG-MGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G-~gGiGKTtLa~~~~~~ 71 (162)
++|+|++ -||+||||+|..+...
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~ 26 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATG 26 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCcHHHHHHHHHHH
Confidence 5777875 6999999998776543
No 494
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.29 E-value=0.027 Score=46.22 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHccC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
.+++|+|..|+|||||.+.+..-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 689999999999999999887543
No 495
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.29 E-value=0.028 Score=41.33 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN 75 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~ 75 (162)
..+|+|.|+.|+||||+|+.+.......
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~ 41 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIH 41 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCc
Confidence 3689999999999999999998765544
No 496
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.26 E-value=0.086 Score=48.24 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.6
Q ss_pred EEEEEEcCCCcchHHHHHHHHccCC
Q 039127 49 FVIPIIGMGGSGNTTPALPVYNDKT 73 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~~~ 73 (162)
..++|+|..|+|||||++.+..-..
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCcc
Confidence 4789999999999999999976544
No 497
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.26 E-value=0.084 Score=38.63 Aligned_cols=63 Identities=16% Similarity=-0.009 Sum_probs=41.8
Q ss_pred eEEEEEEcCCCcchHHHHHHHHccCCce-----------------------------------------------EEEEE
Q 039127 48 FFVIPIIGMGGSGNTTPALPVYNDKTVN-----------------------------------------------FNFAL 80 (162)
Q Consensus 48 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-----------------------------------------------~LlVl 80 (162)
-.+..++|..|.||||.+.....+.... -++++
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViI 107 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAI 107 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEE
Confidence 4688899999999999886654433221 27778
Q ss_pred eCCCCCChhhHHHHHhhccccCCCcEEEEecCC
Q 039127 81 DDTWKEKYVDWTNMRDLFAAVASRSKVIVTTRN 113 (162)
Q Consensus 81 Ddv~~~~~~~~~~l~~~l~~~~~gs~iiiTTR~ 113 (162)
|.+...+.+.++.+...-+ .|-.||+|.+.
T Consensus 108 DEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLAN---RGYRVIVAGLD 137 (214)
T ss_dssp CCGGGSCTTHHHHHHHHHH---TTCEEEEEECS
T ss_pred ECcccCCHHHHHHHHHHhh---CCCEEEEEecc
Confidence 8776545555544433222 26789999985
No 498
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.20 E-value=0.032 Score=46.32 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHcc
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
.-.+++|+|..|+|||||.+.+..-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999998753
No 499
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.19 E-value=0.01 Score=41.84 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=4.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHcc
Q 039127 49 FVIPIIGMGGSGNTTPALPVYND 71 (162)
Q Consensus 49 ~vv~I~G~gGiGKTtLa~~~~~~ 71 (162)
-.|+++|..|+|||||...+...
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999887765
No 500
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.16 E-value=0.029 Score=43.89 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCcchHHHHHHHHccC
Q 039127 47 GFFVIPIIGMGGSGNTTPALPVYNDK 72 (162)
Q Consensus 47 ~~~vv~I~G~gGiGKTtLa~~~~~~~ 72 (162)
....++++|.+|+|||||...+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999987654
Done!