BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039128
(404 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LBL5|PRT1_ARATH E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1
PE=2 SV=2
Length = 410
Score = 243 bits (619), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 186/324 (57%), Gaps = 26/324 (8%)
Query: 7 LTVKSN-AEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRR 65
+T+K++ ++ E+I F CC+CL+LLYKPIVLSCGH+SCFWCVH+SMNG RESHCPICR
Sbjct: 8 ITMKNDESQEEEIPDQFLCCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPICRD 67
Query: 66 PYNHFPSICVMLHRLLLKMYPIAYKMREIEILEDERRYDFFSPQLDNHACGPLVDNECHH 125
PY HFPS+C L+ LL KMYP+A+K RE ++L++E+ + FSPQ+D LV +
Sbjct: 68 PYVHFPSVCQKLYFLLKKMYPLAHKKREEQVLKEEQERECFSPQID------LVLDLSVC 121
Query: 126 LNDSMQFSRIFCGSSSKTGSHENMEQLESVSVAMNNGTSEQSSIEGITVAGKKLPPNELN 185
DS+ S ++ + E + + + V +L + N
Sbjct: 122 SGDSLNVSDKQKVEECSNAANLLSSSSSRGDIPCIPKNQEPTDAKALNVHENELLKD--N 179
Query: 186 HNCKQISIVDVLCTACKQLLIHPVVLNCGHVYCETCII--TPTVQQLKCEVCQCLNPNGF 243
KQIS D+LC+ACK+LL+ PVVLNCGHVYCE C++ +++KC+ C +P GF
Sbjct: 180 KVSKQISKDDLLCSACKELLVRPVVLNCGHVYCEGCVVDMAEESEKIKCQECNVCDPRGF 239
Query: 244 PKVCLELDQFLEEQFSKEYALRRDVILNHEFATMCSMGAGKSGFISS--------SGAKG 295
PKVCL L+Q LEE F +EY R + ++ G I S S
Sbjct: 240 PKVCLILEQLLEENFPEEYNSRSSKVQK-------TLAHNSKGNIQSYLKEGPSLSNDNN 292
Query: 296 EHSSWLADAHSKVHVGVGCDSCGT 319
WLA+ S VH G GCDSCG
Sbjct: 293 NDDPWLANPGSNVHFGAGCDSCGV 316
>sp|Q5PQN2|BFAR_RAT Bifunctional apoptosis regulator OS=Rattus norvegicus GN=Bfar PE=2
SV=1
Length = 450
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 15 PEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFPSIC 74
P+ F C C D L P L+CGH C C+ +++ CP CR + FP +
Sbjct: 25 PQISVSEFSCHCCYDTLVNPTTLNCGHSFCRHCLALWWMSSKKTECPECREKWEGFPKVN 84
Query: 75 VMLHRLLLKMYPIAYKMREIEILED 99
++L + K++P A KMR +I ++
Sbjct: 85 ILLRDAIEKLFPDAIKMRVEDIQQN 109
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 190 QISIVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNP-NGFPKVCL 248
QIS+ + C C L++P LNCGH +C C+ + K E +C GFPKV +
Sbjct: 26 QISVSEFSCHCCYDTLVNPTTLNCGHSFCRHCLALWWMSSKKTECPECREKWEGFPKVNI 85
Query: 249 ELDQFLEEQFSKEYALR-RDVILNHE----FATMCSMGAGKSGFISSSG 292
L +E+ F +R D+ N++ A G ++ S+G
Sbjct: 86 LLRDAIEKLFPDAIKMRVEDIQQNNDVVQSLAAFQKYGNDQNPLAPSTG 134
>sp|Q9NZS9|BFAR_HUMAN Bifunctional apoptosis regulator OS=Homo sapiens GN=BFAR PE=1 SV=1
Length = 450
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 15 PEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFPSIC 74
P+ F C C D+L P L+CGH C C+ +++ CP CR + FP +
Sbjct: 25 PQISVSEFSCHCCYDILVNPTTLNCGHSFCRHCLALWWASSKKTECPECREKWEGFPKVS 84
Query: 75 VMLHRLLLKMYPIAYKMR 92
++L + K++P A ++R
Sbjct: 85 ILLRDAIEKLFPDAIRLR 102
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 184 LNHNCKQISIVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNP-NG 242
L QIS+ + C C +L++P LNCGH +C C+ K E +C G
Sbjct: 20 LKSTGPQISVSEFSCHCCYDILVNPTTLNCGHSFCRHCLALWWASSKKTECPECREKWEG 79
Query: 243 FPKVCLELDQFLEEQFSKEYALRRDVI 269
FPKV + L +E+ F LR + I
Sbjct: 80 FPKVSILLRDAIEKLFPDAIRLRFEDI 106
>sp|Q8R079|BFAR_MOUSE Bifunctional apoptosis regulator OS=Mus musculus GN=Bfar PE=1 SV=1
Length = 450
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 15 PEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFPSIC 74
P+ F C C D L P L+CGH C C+ +++ CP CR + FP +
Sbjct: 25 PQISVSEFSCHCCYDTLVNPTTLNCGHSFCRHCLALWWMSSKKTECPECREKWEGFPKVN 84
Query: 75 VMLHRLLLKMYPIAYKMREIEILED 99
++L + K++P A +MR +I ++
Sbjct: 85 ILLRDAIEKLFPDAIRMRVEDIQQN 109
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 190 QISIVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNP-NGFPKVCL 248
QIS+ + C C L++P LNCGH +C C+ + K E +C GFPKV +
Sbjct: 26 QISVSEFSCHCCYDTLVNPTTLNCGHSFCRHCLALWWMSSKKTECPECREKWEGFPKVNI 85
Query: 249 ELDQFLEEQFSKEYALR-RDVILNHE----FATMCSMGAGKSGFISSSG 292
L +E+ F +R D+ N++ A G ++ S+G
Sbjct: 86 LLRDAIEKLFPDAIRMRVEDIQQNNDVVQSLAAFQKYGNDQNPLAPSTG 134
>sp|Q5D7I6|TRIM5_ALOSA Tripartite motif-containing protein 5 OS=Alouatta sara GN=TRIM5
PE=3 SV=1
Length = 551
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICR--------RPYNH 69
I C ICL+LL +P+ L CGH C C+ + RE CP+CR RP H
Sbjct: 9 IKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKESRERSCPLCRVSYHSENLRPNRH 68
Query: 70 FPSICVMLHRLLL 82
+I L ++L
Sbjct: 69 LANIAERLREVML 81
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCI 222
+V C C +LL P+ L+CGH +C+ CI
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACI 39
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 16 EKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESH-CPICRRPYNHFPSIC 74
+KI + C IC + L +P CGH C+ C+ +N L+ES CP CR+ PS
Sbjct: 77 QKIKKTLECPICTEALQRPFTTHCGHTYCYECL---LNWLKESKSCPTCRQKLYTQPSPA 133
Query: 75 VMLHRLL 81
+++ ++
Sbjct: 134 YLVYEIM 140
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 150 EQLESVSVAMNNGTSEQSSIEGITVAGKKLPPNELNHNCKQISIVDVL------------ 197
E++E + + +N T+ SS ++ N + N KQI L
Sbjct: 27 EKMEVLLIPQSNSTTFASSDATQMYKKSRISSN--SENKKQIPDTKTLLETFQKIKKTLE 84
Query: 198 CTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQ 236
C C + L P +CGH YC C++ + C C+
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCR 123
>sp|B8B5U8|BAHL2_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_27296 PE=3 SV=1
Length = 321
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 9/58 (15%)
Query: 17 KISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRS-----MNGL----RESHCPICRR 65
++ S C ICLD ++ P+ LSCGHI C+ C + ++GL R+S CP+CR+
Sbjct: 210 RVDISLTCSICLDTVFDPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPLCRQ 267
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 194 VDVLCTACKQLLIHPVVLNCGHVYCETC 221
+ + C+ C + PV L+CGH+YC C
Sbjct: 213 ISLTCSICLDTVFDPVALSCGHIYCYLC 240
>sp|Q7XI73|BAHL2_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 2 OS=Oryza sativa
subsp. japonica GN=Os07g0673200 PE=2 SV=1
Length = 321
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 9/58 (15%)
Query: 17 KISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRS-----MNGL----RESHCPICRR 65
++ S C ICLD ++ P+ LSCGHI C+ C + ++GL R+S CP+CR+
Sbjct: 210 RVDISLTCSICLDTVFDPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPLCRQ 267
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 194 VDVLCTACKQLLIHPVVLNCGHVYCETC 221
+ + C+ C + PV L+CGH+YC C
Sbjct: 213 ISLTCSICLDTVFDPVALSCGHIYCYLC 240
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 22 FRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFPS-----ICVM 76
F C +C+ LL++P+ CGH C C+ R ++ HCP+C+ + + I V+
Sbjct: 447 FECALCMRLLFEPVTTPCGHTFCLKCLERCLD--HAPHCPLCKDKLSELLASRNFNITVL 504
Query: 77 LHRLLLKMYPIAYKMREIEILEDERRYDFFSPQLDN 112
L+ + P E+ + +R YD +L N
Sbjct: 505 AEELIFRYLP-------DELSDRKRIYDEEMSELSN 533
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 191 ISIVDVLCTACKQLLIHPVVLNCGHVYCETCI 222
+ + D C C +LL PV CGH +C C+
Sbjct: 442 LDVTDFECALCMRLLFEPVTTPCGHTFCLKCL 473
>sp|Q5BN31|TRIM5_SAIBB Tripartite motif-containing protein 5 OS=Saimiri boliviensis
boliviensis GN=TRIM5 PE=2 SV=1
Length = 494
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCV----HRSMNGLRESHCPICRRPYN----- 68
I C ICL+LL +P+ L CGH C C+ SM E CP+CR PY
Sbjct: 9 IKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKESMLHQGERSCPLCRLPYQSENLR 68
Query: 69 ---HFPSICVMLHRLLLK 83
H SI L ++L+
Sbjct: 69 PNRHLASIVERLREVMLR 86
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCI 222
+V C C +LL P+ L+CGH +C+ CI
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACI 39
>sp|Q12161|PSH1_YEAST RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSH1 PE=1 SV=1
Length = 406
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 17 KISHSFRCCICLDLLYKPIVLSCGHISCFWCVHR--SMNGLRESHCPICRRPYNHFPSIC 74
KI S C IC D ++ P++ CGH C+ C++ + N +E CP CR P++
Sbjct: 23 KIIESLVCSICHDYMFVPMMTPCGHNYCYGCLNTWFASNTQKELACPQCRSDITTIPALN 82
Query: 75 VMLHRLL 81
L + L
Sbjct: 83 TTLQQYL 89
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIIT----PTVQQLKCEVCQCLNPNGFPKVCL 248
I ++C+ C + P++ CGH YC C+ T T ++L C C+ + P +
Sbjct: 25 IESLVCSICHDYMFVPMMTPCGHNYCYGCLNTWFASNTQKELACPQCRS-DITTIPALNT 83
Query: 249 ELDQFL 254
L Q+L
Sbjct: 84 TLQQYL 89
>sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1 OS=Arabidopsis thaliana GN=BAH1
PE=1 SV=1
Length = 335
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 17 KISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRS-----MNGLRESH----CPICR--- 64
K+ C ICLD ++ PI L+CGHI C+ C + ++GL+ + CP+CR
Sbjct: 224 KVDIDLTCSICLDTVFDPISLTCGHIYCYMCACSAASVNVVDGLKTAEATEKCPLCREDG 283
Query: 65 --RPYNHFPSICVMLHRLLLKMYPIAYKMREIEILEDERRY 103
+ H + ++L R + K E L+ + Y
Sbjct: 284 VYKGAVHLDELNILLKRSCRDYWEERRKTERAERLQQAKEY 324
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 176 GKKLPPNELNHNCKQISIVDVLCTACKQLLIHPVVLNCGHVYCETC 221
GK L EL+ + K +D+ C+ C + P+ L CGH+YC C
Sbjct: 211 GKPLLSCELSDSVK--VDIDLTCSICLDTVFDPISLTCGHIYCYMC 254
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 22 FRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPIC 63
RC IC D+L P++ CGH C C+ +N +ES CP+C
Sbjct: 30 LRCHICKDMLQTPVLTQCGHTFCSLCIREYLN--KESRCPLC 69
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 198 CTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVC 235
C CK +L PV+ CGH +C CI ++ +C +C
Sbjct: 32 CHICKDMLQTPVLTQCGHTFCSLCIREYLNKESRCPLC 69
>sp|Q5D7I0|TRIM5_SAISC Tripartite motif-containing protein 5 OS=Saimiri sciureus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCV----HRSMNGLRESHCPICRRPYN----- 68
I C ICL+LL +P+ L CGH C C+ SM E CP+CR PY
Sbjct: 9 IKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKESMLHQGERSCPLCRLPYQSENLR 68
Query: 69 ---HFPSICVMLHRLLLK 83
H SI L ++L+
Sbjct: 69 PNRHLASIVERLREVMLR 86
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCI 222
+V C C +LL P+ L+CGH +C+ CI
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACI 39
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 16 EKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPY 67
E++ +C ICL L + LSC H+ C C+ +SM ++ CP+C+ PY
Sbjct: 8 ERMGRELKCPICLSLYNSAVSLSCNHVFCNACIVKSMK--MDATCPVCKIPY 57
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQ 236
++ C C L V L+C HV+C CI+ C VC+
Sbjct: 13 ELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCK 54
>sp|Q5C8T6|TRIM5_GORGO Tripartite motif-containing protein 5 OS=Gorilla gorilla gorilla
GN=TRIM5 PE=2 SV=1
Length = 493
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCV----HRSMNGLRESHCPICR--------R 65
+ C ICL+LL +P+ L CGH C C+ +SM ES CP+CR R
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHEKSMLDKGESSCPVCRISYQPENIR 68
Query: 66 PYNHFPSICVMLHRLLL 82
P H +I L + L
Sbjct: 69 PNRHVANIVEKLREVKL 85
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCI 222
+V C C +LL P+ L+CGH +C+ C+
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACL 39
>sp|Q1ACD8|TRIM5_PANPA Tripartite motif-containing protein 5 OS=Pan paniscus GN=TRIM5
PE=3 SV=1
Length = 493
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCV----HRSMNGLRESHCPICR--------R 65
+ C ICL+LL +P+ L CGH C C+ +SM ES CP+CR R
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 68
Query: 66 PYNHFPSICVMLHRLLL 82
P H +I L + L
Sbjct: 69 PNRHVANIVEKLREVKL 85
Score = 35.0 bits (79), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCI 222
+V C C +LL P+ L+CGH +C+ C+
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACL 39
>sp|Q5D7J1|TRIM5_PANTR Tripartite motif-containing protein 5 OS=Pan troglodytes GN=TRIM5
PE=2 SV=1
Length = 493
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCV----HRSMNGLRESHCPICR--------R 65
+ C ICL+LL +P+ L CGH C C+ +SM ES CP+CR R
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 68
Query: 66 PYNHFPSICVMLHRLLL 82
P H +I L + L
Sbjct: 69 PNRHVANIVEKLREVKL 85
Score = 35.0 bits (79), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCI 222
+V C C +LL P+ L+CGH +C+ C+
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACL 39
>sp|Q9C035|TRIM5_HUMAN Tripartite motif-containing protein 5 OS=Homo sapiens GN=TRIM5
PE=1 SV=1
Length = 493
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCV----HRSMNGLRESHCPICR--------R 65
+ C ICL+LL +P+ L CGH C C+ +SM ES CP+CR R
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 68
Query: 66 PYNHFPSICVMLHRLLL 82
P H +I L + L
Sbjct: 69 PNRHVANIVEKLREVKL 85
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCI 222
+V C C +LL P+ L+CGH +C+ C+
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACL 39
>sp|Q5D7I2|TRIM5_PITPI Tripartite motif-containing protein 5 OS=Pithecia pithecia
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCV----HRSMNGLRESHCPICR--------R 65
I C ICL+LL +P+ L CGH C C+ +SM E CP+CR R
Sbjct: 9 IKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKKSMLHQGERSCPLCRISYPSENLR 68
Query: 66 PYNHFPSICVMLHRLLL 82
P H +I L ++L
Sbjct: 69 PNRHLANIVERLREVML 85
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCI 222
+V C C +LL P+ L+CGH +C+ CI
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACI 39
>sp|Q7XZZ3|BAHL1_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. japonica GN=Os03g0650900 PE=2 SV=1
Length = 339
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 25/113 (22%)
Query: 7 LTVKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRS-----MNGLR----E 57
L + +E K +S C ICLD L+ P LSCGH+ C C + G++ E
Sbjct: 218 LMTMAISETMKYEYSLTCPICLDTLFNPYALSCGHLFCKGCACGAASVYIFQGVKSAPPE 277
Query: 58 SHCPICRRPYNHFPSICVMLHRLLLKMYPIAYKMREIEILEDERRYDFFSPQL 110
+ CP+CR S V H A M E+++L R D++ +L
Sbjct: 278 AKCPVCR-------SDGVFAH---------AVHMTELDLLIKTRSKDYWRQRL 314
>sp|A2XK56|BAHL1_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_12825 PE=3 SV=1
Length = 339
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 25/113 (22%)
Query: 7 LTVKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRS-----MNGLR----E 57
L + +E K +S C ICLD L+ P LSCGH+ C C + G++ E
Sbjct: 218 LMTMAISETMKYEYSLTCPICLDTLFNPYALSCGHLFCKGCACGAASVYIFQGVKSAPPE 277
Query: 58 SHCPICRRPYNHFPSICVMLHRLLLKMYPIAYKMREIEILEDERRYDFFSPQL 110
+ CP+CR S V H A M E+++L R D++ +L
Sbjct: 278 AKCPVCR-------SDGVFAH---------AVHMTELDLLIKTRSKDYWRQRL 314
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 16 EKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSM---------NGLRESHCPICR 64
E IS F C ICLD +++P++ CGH+ C+ C+++ + + ++ CP+C+
Sbjct: 33 ENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCK 90
>sp|Q5NCC9|TRI58_MOUSE Tripartite motif-containing protein 58 OS=Mus musculus GN=Trim58
PE=2 SV=1
Length = 485
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 11 SNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCV----HRSMNGLRESHCPICRRP 66
+ A E++ RC +CLD L +PI + CGH C C+ +S + CP CR P
Sbjct: 2 ATAPGERLQEEARCSVCLDFLQEPISVDCGHSFCLRCISEFCEKSDSAQGVYACPQCRGP 61
Query: 67 YN 68
+
Sbjct: 62 FR 63
>sp|Q96EQ8|RN125_HUMAN E3 ubiquitin-protein ligase RNF125 OS=Homo sapiens GN=RNF125 PE=1
SV=4
Length = 232
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 5 TVLTVKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICR 64
T ++ +PE SF C +CL++L++P+ CGH+ C C+ S+ + + CP CR
Sbjct: 18 TARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWT-CPYCR 76
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 157 VAMNNGTSEQSSIEGITVAGKKLPPNELNHNCKQISIVDVLCTACKQLLIHPVVLNCGHV 216
++ ++G S +S + ++ P ++ + C C ++L PV CGHV
Sbjct: 5 LSTDSGKSAPASATARALERRRDP---------ELPVTSFDCAVCLEVLHQPVRTRCGHV 55
Query: 217 YCETCIITPTV-QQLKCEVCQCLNPN-GFP 244
+C +CI T + C C+ P+ G P
Sbjct: 56 FCRSCIATSLKNNKWTCPYCRAYLPSEGVP 85
>sp|Q95KF1|RN125_MACFA E3 ubiquitin-protein ligase RNF125 OS=Macaca fascicularis
GN=RNF125 PE=2 SV=3
Length = 232
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 5 TVLTVKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICR 64
T ++ +PE SF C +CL++L++P+ CGH+ C C+ S+ + + CP CR
Sbjct: 18 TPRALERRGDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWT-CPYCR 76
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 175 AGKKLPPNELNHNCK-----QISIVDVLCTACKQLLIHPVVLNCGHVYCETCIITP-TVQ 228
+GK PP+ + ++ + C C ++L PV CGHV+C +CI T
Sbjct: 9 SGKSAPPSATPRALERRGDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNN 68
Query: 229 QLKCEVCQCLNPN-GFP 244
+ C C+ P+ G P
Sbjct: 69 KWTCPYCRAYLPSEGVP 85
>sp|Q8GW10|BAH1L_ARATH Probable E3 ubiquitin-protein ligase BAH1-like OS=Arabidopsis
thaliana GN=RF178 PE=2 SV=1
Length = 335
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 2 EDQTVLTVKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGL------ 55
EDQ VL + E + + C ICL+ ++ P L CGHI C C + + L
Sbjct: 210 EDQPVLKLMLPNSIE-LEYDLTCAICLETVFNPYALKCGHIFCNSCACSAASVLIFQGIK 268
Query: 56 ---RESHCPICRRPYNHFPSICVMLHRLLLKMYPIAY 89
R S CPICR + ++ ++ LLLK Y
Sbjct: 269 AAPRHSKCPICREAGVYAEAVHMIELHLLLKTRSKEY 305
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCI-----------ITPTVQQLKCEVCQCLNPNGF 243
D+ C C + + +P L CGH++C +C I + KC +C+
Sbjct: 228 DLTCAICLETVFNPYALKCGHIFCNSCACSAASVLIFQGIKAAPRHSKCPICREAGVYAE 287
Query: 244 PKVCLELDQFLEEQFSKEYALRR 266
+EL L+ + SKEY R
Sbjct: 288 AVHMIELHLLLKTR-SKEYWKER 309
>sp|Q12899|TRI26_HUMAN Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26
PE=2 SV=1
Length = 539
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 11 SNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVH--RSMNGLRESHCPICRRPYN 68
++A + C ICLD L P+ + CGH+ C C R ++G R CP+C++P+
Sbjct: 3 TSAPLRSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPV-CPLCKKPFK 61
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETC 221
+V C+ C L PV ++CGHV+C +C
Sbjct: 13 EVTCSICLDYLRDPVTIDCGHVFCRSC 39
>sp|Q7YR34|TRI26_PANTR Tripartite motif-containing protein 26 OS=Pan troglodytes
GN=TRIM26 PE=3 SV=1
Length = 539
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 11 SNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVH--RSMNGLRESHCPICRRPYN 68
++A + C ICLD L P+ + CGH+ C C R ++G R CP+C++P+
Sbjct: 3 TSAPLRSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPV-CPLCKKPFK 61
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETC 221
+V C+ C L PV ++CGHV+C +C
Sbjct: 13 EVTCSICLDYLRDPVTIDCGHVFCRSC 39
>sp|Q9D9R0|RN125_MOUSE E3 ubiquitin-protein ligase RNF125 OS=Mus musculus GN=Rnf125 PE=2
SV=3
Length = 233
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 5 TVLTVKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICR 64
T T++ + + E SF C +CL++L++P+ CGH+ C C+ S+ + CP CR
Sbjct: 18 TPRTLERSGDSELPITSFDCSVCLEVLHQPVRTRCGHVFCRSCIATSIKNNNKWTCPYCR 77
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 190 QISIVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLK--CEVCQCLNPN-GFP 244
++ I C+ C ++L PV CGHV+C +CI T K C C+ P+ G P
Sbjct: 29 ELPITSFDCSVCLEVLHQPVRTRCGHVFCRSCIATSIKNNNKWTCPYCRAYLPSEGVP 86
>sp|Q99PN3|TRI26_MOUSE Tripartite motif-containing protein 26 OS=Mus musculus GN=Trim26
PE=2 SV=3
Length = 545
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 24 CCICLDLLYKPIVLSCGHISCFWCVH--RSMNGLRESHCPICRRPYN 68
C ICLD L P+ + CGH+ C C R ++G R CP+C++P+
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPV-CPLCKKPFK 61
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETC 221
+V C+ C L PV ++CGHV+C +C
Sbjct: 13 EVTCSICLDYLRDPVTIDCGHVFCRSC 39
>sp|Q5D7H7|TRIM5_LAGLA Tripartite motif-containing protein 5 OS=Lagothrix lagotricha
GN=TRIM5 PE=3 SV=1
Length = 547
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCV----HRSMNGLRESHCPICR--------R 65
I C ICLDLL +P+ L CGH C C+ S E CP+CR R
Sbjct: 9 IKEEVTCPICLDLLTEPLSLDCGHSFCQACITADHKESTLHQGERSCPLCRVGYQSENLR 68
Query: 66 PYNHFPSICVMLHRLLL 82
P H +I L ++L
Sbjct: 69 PNRHLANIAERLREVML 85
Score = 35.0 bits (79), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCI 222
+V C C LL P+ L+CGH +C+ CI
Sbjct: 12 EVTCPICLDLLTEPLSLDCGHSFCQACI 39
>sp|P62603|TRI26_RAT Tripartite motif-containing protein 26 OS=Rattus norvegicus
GN=Trim26 PE=2 SV=1
Length = 542
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 24 CCICLDLLYKPIVLSCGHISCFWCVH--RSMNGLRESHCPICRRPYN 68
C ICLD L P+ + CGH+ C C R ++G R CP+C++P+
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPV-CPLCKKPFK 61
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETC 221
+V C+ C L PV ++CGHV+C +C
Sbjct: 13 EVTCSICLDYLRDPVTIDCGHVFCRSC 39
>sp|Q3ZEE5|TRIM5_HYLLA Tripartite motif-containing protein 5 OS=Hylobates lar GN=TRIM5
PE=3 SV=1
Length = 493
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCV---HRSMNGLRESHCPICRRPYNH 69
+ C ICL+LL +P+ L CGH C C+ H++ E CP+CR Y H
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDGERSCPVCRISYQH 63
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCI 222
+V C C +LL P+ L+CGH +C+ C+
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACL 39
>sp|P53769|CWC24_YEAST Pre-mRNA-splicing factor CWC24 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CWC24 PE=1 SV=1
Length = 259
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 198 CTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEEQ 257
CT CK+ PVV NCGH +C +C + KC +C +G KV +L + L ++
Sbjct: 199 CTLCKEDYKSPVVTNCGHYFCGSCFAKDMKKGTKCFICH-KETHGSAKVASDLQKMLNKR 257
Query: 258 FS 259
S
Sbjct: 258 KS 259
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 2 EDQTVLTVKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCP 61
ED +T+ + EKI F+C +C + P+V +CGH C C + M + + C
Sbjct: 183 EDSKAVTL----DLEKIP--FKCTLCKEDYKSPVVTNCGHYFCGSCFAKDMK--KGTKCF 234
Query: 62 ICRRPYNHFPSICVMLHRLLLK 83
IC + + + L ++L K
Sbjct: 235 ICHKETHGSAKVASDLQKMLNK 256
>sp|Q1ACD6|TRIM5_HYLSY Tripartite motif-containing protein 5 OS=Hylobates syndactylus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCV---HR-SMNGLRESHCPICRRPYNH 69
+ C ICL+LL +P+ L CGH C C+ H+ SM E CP+CR Y H
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCRISYQH 64
Score = 35.8 bits (81), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCIIT------PTVQQLKCEVCQ 236
+V C C +LL P+ L+CGH +C+ C+ P + C VC+
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCR 59
>sp|Q1ACD7|TRIM5_NOMLE Tripartite motif-containing protein 5 OS=Nomascus leucogenys
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCV---HR-SMNGLRESHCPICRRPYNH 69
+ C ICL+LL +P+ L CGH C C+ H+ SM E CP+CR Y H
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCRISYQH 64
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCIIT------PTVQQLKCEVCQ 236
+V C C +LL P+ L+CGH +C+ C+ P + C VC+
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCR 59
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 19 SHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRR------PYNHFPS 72
+ C +C+ L Y+P+ CGH C C+ R ++ + CP+C+ P + S
Sbjct: 456 ASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLD--HNAKCPLCKDVLLQCLPSRKY-S 512
Query: 73 ICVMLHRLLLKMYPIAYKMRE 93
V+L L+ P +K R+
Sbjct: 513 KNVILEELIATFLPEEFKERK 533
Score = 38.5 bits (88), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVC-----QCLNPNGFPK-VCL 248
D+ C+ C +L PV CGH +C C+ KC +C QCL + K V L
Sbjct: 458 DLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDVLLQCLPSRKYSKNVIL 517
Query: 249 E--LDQFLEEQFSKEYAL 264
E + FL E+F + L
Sbjct: 518 EELIATFLPEEFKERKRL 535
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 198 CTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVC 235
C C L PV L CGH +C+ C+ +C +C
Sbjct: 159 CKKCHGFLSDPVSLWCGHTFCKLCLERGRAADRRCALC 196
>sp|Q2YEM8|TRIM5_HOOHO Tripartite motif-containing protein 5 OS=Hoolock hoolock GN=TRIM5
PE=3 SV=1
Length = 494
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCV---HR-SMNGLRESHCPICRRPYNH 69
+ C ICL+LL +P+ L CGH C C+ H+ SM E CP+CR Y H
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCRISYQH 64
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCIIT------PTVQQLKCEVCQ 236
+V C C +LL P+ L+CGH +C+ C+ P + C VC+
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCR 59
>sp|A6NK02|TRI75_HUMAN Putative tripartite motif-containing protein 75 OS=Homo sapiens
GN=TRIM75 PE=5 SV=2
Length = 468
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 23 RCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESH-CPICR 64
+C ICLD L P+ + CGH C C+ +S L+E CP+CR
Sbjct: 15 KCSICLDYLSDPVTIECGHNFCRSCIQQSWLDLQELFPCPVCR 57
>sp|Q9C037|TRIM4_HUMAN Tripartite motif-containing protein 4 OS=Homo sapiens GN=TRIM4
PE=2 SV=2
Length = 500
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 14 EPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMN-GLRESHCPICRRP 66
E E I C ICLD P+ + CGH C C+HR+ G CP CR P
Sbjct: 2 EAEDIQEELTCPICLDYFQDPVSIECGHNFCRGCLHRNWAPGGGPFPCPECRHP 55
>sp|Q9ESN2|TRI39_MOUSE E3 ubiquitin-protein ligase TRIM39 OS=Mus musculus GN=Trim39 PE=2
SV=1
Length = 488
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 24 CCICLDLLYKPIVLSCGHISCFWCVHRSMNGL-RESHCPICRR 65
C +CL+ L +P+++ CGH C C+ R L R+ CP+CR+
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRK 71
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 194 VDVLCTACKQLLIHPVVLNCGHVYCETCI 222
V+ C+ C + L PV++ CGH +C+ CI
Sbjct: 25 VEASCSVCLEYLKEPVIIECGHNFCKACI 53
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 21 SFRCCICLDLLYKPIVLSCGHISCFWCVHRSMN---------GLRESHCPICRRPYNH 69
+F C ICLD + +P+V CGH+ C+ C+H+ ++ R CP+C+ +H
Sbjct: 45 NFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSH 102
>sp|Q6MFZ5|TRI39_RAT E3 ubiquitin-protein ligase TRIM39 OS=Rattus norvegicus GN=Trim39
PE=2 SV=1
Length = 488
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 24 CCICLDLLYKPIVLSCGHISCFWCVHRSMNGL-RESHCPICRR 65
C +CL+ L +P+++ CGH C C+ R L R+ CP+CR+
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRK 71
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 194 VDVLCTACKQLLIHPVVLNCGHVYCETCI 222
V+ C+ C + L PV++ CGH +C+ CI
Sbjct: 25 VEASCSVCLEYLKEPVIIECGHNFCKACI 53
>sp|P33288|RAD18_NEUCR Postreplication repair E3 ubiquitin-protein ligase rad-18
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=uvs-2 PE=3 SV=2
Length = 501
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICR 64
+ +FRC +C D P++ SC H C C+ R ++ +S CP+CR
Sbjct: 28 VEQAFRCHVCKDFYDSPMLTSCNHTFCSLCIRRCLS--VDSKCPLCR 72
>sp|Q9HCM9|TRI39_HUMAN E3 ubiquitin-protein ligase TRIM39 OS=Homo sapiens GN=TRIM39 PE=1
SV=2
Length = 518
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 24 CCICLDLLYKPIVLSCGHISCFWCVHRSMNGL-RESHCPICRR 65
C +CL+ L +P+++ CGH C C+ R L R+ CP+CR+
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRK 71
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 194 VDVLCTACKQLLIHPVVLNCGHVYCETCI 222
V+ C+ C + L PV++ CGH +C+ CI
Sbjct: 25 VEASCSVCLEYLKEPVIIECGHNFCKACI 53
>sp|Q1XHU0|TRI39_PANTR E3 ubiquitin-protein ligase TRIM39 OS=Pan troglodytes GN=TRIM39
PE=3 SV=1
Length = 518
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 24 CCICLDLLYKPIVLSCGHISCFWCVHRSMNGL-RESHCPICRR 65
C +CL+ L +P+++ CGH C C+ R L R+ CP+CR+
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRK 71
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 194 VDVLCTACKQLLIHPVVLNCGHVYCETCI 222
V+ C+ C + L PV++ CGH +C+ CI
Sbjct: 25 VEASCSVCLEYLKEPVIIECGHNFCKACI 53
>sp|Q4WZJ6|RAD18_ASPFU Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=rad18 PE=3 SV=1
Length = 418
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICR 64
+ S RC +C D P++ SC H C C+ R ++ E CP CR
Sbjct: 24 LESSLRCQVCKDFFDNPVITSCSHTFCSLCIRRCLST--EGKCPACR 68
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 198 CTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQ 236
C CK +PV+ +C H +C CI + KC C+
Sbjct: 30 CQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKCPACR 68
>sp|Q5D7I1|TRIM5_ATEGE Tripartite motif-containing protein 5 OS=Ateles geoffroyi
GN=TRIM5 PE=2 SV=1
Length = 547
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCV----HRSMNGLRESHCPICR--------R 65
I C ICL+LL +P+ L CGH C C+ S E CP+CR R
Sbjct: 9 IKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKESTLHQGERSCPLCRVSYQSENLR 68
Query: 66 PYNHFPSICVMLHRLLL 82
P H +I L ++L
Sbjct: 69 PNRHLANIAERLREVML 85
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 195 DVLCTACKQLLIHPVVLNCGHVYCETCI 222
+V C C +LL P+ L+CGH +C+ CI
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACI 39
>sp|Q02398|RAD18_EMENI Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=uvsH PE=2 SV=1
Length = 443
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 21 SFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICR 64
S RC +C D P++ SC H C C+ R ++ E CP CR
Sbjct: 27 SLRCQVCKDFFDNPVITSCSHTFCSLCIRRCLST--EGKCPTCR 68
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 198 CTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLE-- 255
C CK +PV+ +C H +C CI +CL+ G C DQ L+
Sbjct: 30 CQVCKDFFDNPVITSCSHTFCSLCIR------------RCLSTEGKCPTCRSSDQELKLR 77
Query: 256 -----EQFSKEYALRRDVILNHEFATMCSMGAGKSGFISS 290
++ + + R IL + A M G SG +++
Sbjct: 78 RNWVVQELVEGFKNARPSIL--QLARMAQTGTDDSGDLAA 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,094,935
Number of Sequences: 539616
Number of extensions: 6637224
Number of successful extensions: 19276
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 218
Number of HSP's that attempted gapping in prelim test: 18328
Number of HSP's gapped (non-prelim): 1122
length of query: 404
length of database: 191,569,459
effective HSP length: 120
effective length of query: 284
effective length of database: 126,815,539
effective search space: 36015613076
effective search space used: 36015613076
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)