Query 039128
Match_columns 404
No_of_seqs 489 out of 3025
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:32:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3039 Uncharacterized conser 99.4 2.7E-12 5.9E-17 117.3 9.1 201 16-242 38-272 (303)
2 PF15227 zf-C3HC4_4: zinc fing 99.3 2.7E-12 6E-17 88.0 3.6 40 24-63 1-42 (42)
3 PF15227 zf-C3HC4_4: zinc fing 99.2 7.1E-12 1.5E-16 85.9 1.5 38 198-235 1-42 (42)
4 TIGR00599 rad18 DNA repair pro 99.2 1.5E-10 3.2E-15 115.8 10.9 66 2-69 7-72 (397)
5 smart00504 Ubox Modified RING 99.1 7E-11 1.5E-15 88.1 3.2 61 195-255 1-61 (63)
6 PLN03208 E3 ubiquitin-protein 99.0 2.8E-10 6.1E-15 102.3 5.1 57 13-69 10-80 (193)
7 TIGR00599 rad18 DNA repair pro 98.9 4.6E-10 1E-14 112.2 3.8 67 192-258 23-89 (397)
8 PF14835 zf-RING_6: zf-RING of 98.9 3.4E-10 7.3E-15 83.1 2.1 60 193-254 5-65 (65)
9 COG5432 RAD18 RING-finger-cont 98.9 6.5E-10 1.4E-14 104.0 4.4 66 2-69 6-71 (391)
10 KOG0287 Postreplication repair 98.9 5.8E-10 1.3E-14 106.4 3.3 77 4-82 6-83 (442)
11 smart00504 Ubox Modified RING 98.9 1.8E-09 3.8E-14 80.5 5.2 46 21-68 1-46 (63)
12 PF13923 zf-C3HC4_2: Zinc fing 98.9 9E-10 1.9E-14 74.3 2.9 38 24-63 1-39 (39)
13 PLN03208 E3 ubiquitin-protein 98.9 1E-09 2.2E-14 98.7 3.3 49 193-241 16-80 (193)
14 PF13923 zf-C3HC4_2: Zinc fing 98.9 5.1E-10 1.1E-14 75.5 0.9 38 198-235 1-39 (39)
15 PF04564 U-box: U-box domain; 98.8 1.7E-09 3.6E-14 83.5 2.8 65 194-258 3-68 (73)
16 KOG0287 Postreplication repair 98.8 9.7E-10 2.1E-14 104.9 1.3 66 193-258 21-86 (442)
17 PF00097 zf-C3HC4: Zinc finger 98.8 2.7E-09 5.9E-14 72.6 2.7 40 24-63 1-41 (41)
18 PF13920 zf-C3HC4_3: Zinc fing 98.8 3.7E-09 8E-14 75.3 2.9 47 20-68 1-48 (50)
19 KOG0823 Predicted E3 ubiquitin 98.8 4E-09 8.7E-14 96.6 3.0 52 19-70 45-97 (230)
20 PF13920 zf-C3HC4_3: Zinc fing 98.7 2.8E-09 6.1E-14 75.9 0.7 46 195-240 2-48 (50)
21 PF13639 zf-RING_2: Ring finge 98.7 4.1E-09 9E-14 72.9 1.2 40 23-64 2-44 (44)
22 KOG0823 Predicted E3 ubiquitin 98.7 1.1E-08 2.4E-13 93.7 4.3 50 192-241 44-96 (230)
23 PF04564 U-box: U-box domain; 98.7 2.2E-08 4.8E-13 77.2 5.3 65 19-84 2-67 (73)
24 PF13445 zf-RING_UBOX: RING-ty 98.7 6.7E-09 1.5E-13 71.3 1.7 37 24-61 1-43 (43)
25 KOG0317 Predicted E3 ubiquitin 98.7 1.2E-08 2.6E-13 96.1 3.7 52 19-72 237-288 (293)
26 KOG0317 Predicted E3 ubiquitin 98.7 1E-08 2.2E-13 96.6 3.1 53 189-241 233-285 (293)
27 KOG0320 Predicted E3 ubiquitin 98.6 1.3E-08 2.8E-13 89.5 2.7 48 20-69 130-179 (187)
28 PF14835 zf-RING_6: zf-RING of 98.6 7.1E-09 1.5E-13 76.2 0.6 49 16-68 2-51 (65)
29 PF13639 zf-RING_2: Ring finge 98.6 5E-09 1.1E-13 72.6 -0.3 40 197-236 2-44 (44)
30 PF00097 zf-C3HC4: Zinc finger 98.6 1.4E-08 3E-13 69.1 1.1 38 198-235 1-41 (41)
31 KOG0320 Predicted E3 ubiquitin 98.6 1.6E-08 3.5E-13 88.9 1.8 49 193-241 129-179 (187)
32 PHA02929 N1R/p28-like protein; 98.6 4E-08 8.6E-13 92.1 4.0 50 18-69 171-228 (238)
33 PF13445 zf-RING_UBOX: RING-ty 98.6 1.3E-08 2.9E-13 69.8 0.3 35 198-233 1-43 (43)
34 COG5432 RAD18 RING-finger-cont 98.6 2.1E-08 4.6E-13 94.0 1.8 67 193-259 23-89 (391)
35 PF14634 zf-RING_5: zinc-RING 98.5 6.8E-08 1.5E-12 66.9 3.2 41 23-65 1-44 (44)
36 KOG4159 Predicted E3 ubiquitin 98.5 8.7E-08 1.9E-12 96.1 4.7 96 13-110 76-180 (398)
37 PF14634 zf-RING_5: zinc-RING 98.5 6E-08 1.3E-12 67.1 2.2 41 197-237 1-44 (44)
38 cd00162 RING RING-finger (Real 98.5 1E-07 2.3E-12 65.1 3.4 43 23-66 1-44 (45)
39 PHA02929 N1R/p28-like protein; 98.5 5.1E-08 1.1E-12 91.4 2.2 47 194-240 173-227 (238)
40 cd00162 RING RING-finger (Real 98.4 7.9E-08 1.7E-12 65.7 1.4 42 197-238 1-44 (45)
41 KOG2177 Predicted E3 ubiquitin 98.4 1.3E-07 2.9E-12 90.8 3.0 64 191-256 9-72 (386)
42 smart00184 RING Ring finger. E 98.4 2.2E-07 4.8E-12 61.2 3.1 39 24-63 1-39 (39)
43 KOG0824 Predicted E3 ubiquitin 98.4 3.5E-08 7.5E-13 93.4 -1.3 48 21-69 7-54 (324)
44 KOG2177 Predicted E3 ubiquitin 98.4 1.4E-07 3E-12 90.7 1.8 51 13-65 5-55 (386)
45 PHA02926 zinc finger-like prot 98.4 2.5E-07 5.4E-12 84.4 3.3 53 17-69 166-231 (242)
46 KOG2660 Locus-specific chromos 98.4 2.1E-07 4.5E-12 89.5 2.7 79 193-271 13-100 (331)
47 KOG2164 Predicted E3 ubiquitin 98.3 2.5E-07 5.3E-12 93.6 2.7 49 21-69 186-237 (513)
48 smart00184 RING Ring finger. E 98.3 2.5E-07 5.5E-12 61.0 1.7 38 198-235 1-39 (39)
49 KOG2660 Locus-specific chromos 98.2 1.9E-06 4.1E-11 83.0 6.3 87 14-102 8-100 (331)
50 COG5574 PEX10 RING-finger-cont 98.2 5.2E-07 1.1E-11 84.2 2.2 50 20-69 214-263 (271)
51 COG5574 PEX10 RING-finger-cont 98.2 7E-07 1.5E-11 83.4 2.5 47 193-239 213-261 (271)
52 PHA02926 zinc finger-like prot 98.2 6.4E-07 1.4E-11 81.7 1.4 48 193-240 168-230 (242)
53 KOG4367 Predicted Zn-finger pr 98.1 5.6E-06 1.2E-10 81.9 7.8 36 18-53 1-36 (699)
54 KOG0311 Predicted E3 ubiquitin 98.1 6E-07 1.3E-11 86.8 0.1 72 15-87 37-111 (381)
55 PF12678 zf-rbx1: RING-H2 zinc 98.1 2.5E-06 5.4E-11 65.7 3.4 41 22-64 20-73 (73)
56 KOG0311 Predicted E3 ubiquitin 98.1 5.3E-07 1.2E-11 87.2 -1.1 69 191-259 39-110 (381)
57 KOG4159 Predicted E3 ubiquitin 98.0 2.5E-06 5.4E-11 85.7 2.7 71 193-263 82-157 (398)
58 COG5152 Uncharacterized conser 98.0 3.5E-06 7.5E-11 75.3 2.5 60 21-82 196-255 (259)
59 TIGR00570 cdk7 CDK-activating 97.9 7.6E-06 1.6E-10 79.1 4.2 48 195-242 3-56 (309)
60 PF12678 zf-rbx1: RING-H2 zinc 97.9 3.8E-06 8.2E-11 64.7 1.7 40 197-236 21-73 (73)
61 KOG2164 Predicted E3 ubiquitin 97.9 4.1E-06 8.9E-11 84.9 1.6 47 195-241 186-237 (513)
62 COG5152 Uncharacterized conser 97.9 5.2E-06 1.1E-10 74.2 2.0 60 195-255 196-255 (259)
63 TIGR00570 cdk7 CDK-activating 97.8 3.6E-05 7.8E-10 74.5 6.1 48 21-69 3-55 (309)
64 KOG1813 Predicted E3 ubiquitin 97.7 1.7E-05 3.7E-10 75.2 2.7 53 21-75 241-293 (313)
65 PF11789 zf-Nse: Zinc-finger o 97.7 2.2E-05 4.8E-10 57.3 2.0 44 19-62 9-53 (57)
66 KOG0978 E3 ubiquitin ligase in 97.6 1.3E-05 2.7E-10 85.1 0.4 49 193-241 641-690 (698)
67 KOG1813 Predicted E3 ubiquitin 97.6 3.2E-05 6.9E-10 73.5 3.0 58 196-254 242-299 (313)
68 PF12861 zf-Apc11: Anaphase-pr 97.6 6.1E-05 1.3E-09 59.1 3.6 50 19-68 19-82 (85)
69 KOG4628 Predicted E3 ubiquitin 97.6 3.6E-05 7.9E-10 75.6 2.6 47 22-69 230-279 (348)
70 KOG0824 Predicted E3 ubiquitin 97.5 5.3E-05 1.1E-09 72.2 2.8 49 195-243 7-56 (324)
71 KOG0978 E3 ubiquitin ligase in 97.4 2.7E-05 5.9E-10 82.6 -0.3 55 14-69 636-690 (698)
72 COG5243 HRD1 HRD ubiquitin lig 97.4 6E-05 1.3E-09 73.5 2.0 47 193-239 285-344 (491)
73 KOG4628 Predicted E3 ubiquitin 97.4 8E-05 1.7E-09 73.3 2.6 46 196-241 230-279 (348)
74 KOG0802 E3 ubiquitin ligase [P 97.4 5.9E-05 1.3E-09 79.8 1.6 49 18-68 288-341 (543)
75 KOG4172 Predicted E3 ubiquitin 97.4 3.9E-05 8.5E-10 54.4 -0.3 46 22-68 8-54 (62)
76 COG5540 RING-finger-containing 97.4 9.6E-05 2.1E-09 70.3 2.2 46 195-240 323-372 (374)
77 KOG0802 E3 ubiquitin ligase [P 97.3 6.7E-05 1.5E-09 79.4 1.0 47 193-239 289-340 (543)
78 COG5243 HRD1 HRD ubiquitin lig 97.3 0.00015 3.3E-09 70.7 3.1 53 14-68 279-345 (491)
79 COG5222 Uncharacterized conser 97.3 0.00021 4.6E-09 67.8 3.6 43 22-65 275-318 (427)
80 KOG2879 Predicted E3 ubiquitin 97.2 0.00028 6E-09 66.5 3.9 54 15-68 233-287 (298)
81 COG5540 RING-finger-containing 97.2 0.00021 4.5E-09 68.1 2.8 47 21-68 323-372 (374)
82 KOG2879 Predicted E3 ubiquitin 97.2 0.00022 4.9E-09 67.1 2.6 47 193-239 237-286 (298)
83 PF11789 zf-Nse: Zinc-finger o 97.2 0.00014 3E-09 53.2 0.7 42 193-234 9-53 (57)
84 KOG4172 Predicted E3 ubiquitin 96.9 0.00018 3.8E-09 51.1 -0.3 44 196-239 8-53 (62)
85 KOG0825 PHD Zn-finger protein 96.9 0.00021 4.5E-09 75.6 -0.1 48 21-70 123-173 (1134)
86 KOG0297 TNF receptor-associate 96.9 0.00047 1E-08 70.0 2.5 55 12-68 12-67 (391)
87 COG5222 Uncharacterized conser 96.9 0.00099 2.1E-08 63.4 4.1 42 196-237 275-318 (427)
88 KOG4265 Predicted E3 ubiquitin 96.9 0.0007 1.5E-08 66.2 3.1 48 193-240 288-336 (349)
89 KOG0297 TNF receptor-associate 96.7 0.0011 2.3E-08 67.4 3.4 48 192-239 18-66 (391)
90 PF12861 zf-Apc11: Anaphase-pr 96.7 0.00084 1.8E-08 52.7 2.0 45 195-239 21-81 (85)
91 KOG4265 Predicted E3 ubiquitin 96.4 0.0026 5.5E-08 62.4 3.5 49 19-69 288-337 (349)
92 smart00744 RINGv The RING-vari 96.3 0.0039 8.4E-08 44.1 2.9 42 23-64 1-49 (49)
93 KOG0804 Cytoplasmic Zn-finger 96.2 0.0022 4.7E-08 64.4 1.9 50 15-68 169-222 (493)
94 KOG1002 Nucleotide excision re 96.2 0.0032 6.9E-08 64.3 3.1 53 16-68 531-586 (791)
95 PF14447 Prok-RING_4: Prokaryo 96.2 0.0043 9.3E-08 44.5 2.8 47 193-241 5-51 (55)
96 KOG1039 Predicted E3 ubiquitin 96.2 0.0022 4.7E-08 63.5 1.6 47 193-239 159-220 (344)
97 KOG1645 RING-finger-containing 96.2 0.0079 1.7E-07 59.8 5.3 48 21-68 4-56 (463)
98 KOG1940 Zn-finger protein [Gen 96.1 0.0014 3.1E-08 62.7 -0.2 73 197-271 160-237 (276)
99 KOG4367 Predicted Zn-finger pr 95.9 0.0037 8.1E-08 62.3 1.7 33 193-225 2-34 (699)
100 KOG1002 Nucleotide excision re 95.8 0.0031 6.8E-08 64.3 0.9 48 193-240 534-586 (791)
101 KOG0825 PHD Zn-finger protein 95.8 0.00048 1E-08 72.9 -5.2 48 194-241 122-172 (1134)
102 KOG1039 Predicted E3 ubiquitin 95.8 0.0054 1.2E-07 60.8 2.3 51 19-69 159-222 (344)
103 PF11793 FANCL_C: FANCL C-term 95.7 0.002 4.4E-08 49.1 -0.7 48 21-68 2-66 (70)
104 KOG1785 Tyrosine kinase negati 95.6 0.0058 1.3E-07 60.4 1.8 50 21-70 369-418 (563)
105 KOG1785 Tyrosine kinase negati 95.4 0.0064 1.4E-07 60.1 1.2 45 197-241 371-417 (563)
106 COG5219 Uncharacterized conser 95.3 0.0075 1.6E-07 65.4 1.5 53 16-68 1464-1523(1525)
107 PF14447 Prok-RING_4: Prokaryo 95.2 0.0091 2E-07 42.8 1.3 46 19-68 5-50 (55)
108 KOG4692 Predicted E3 ubiquitin 95.2 0.01 2.2E-07 57.9 2.0 48 19-68 420-467 (489)
109 KOG1734 Predicted RING-contain 95.1 0.0094 2E-07 56.2 1.3 51 18-68 221-281 (328)
110 KOG1734 Predicted RING-contain 95.0 0.0072 1.6E-07 56.9 0.3 46 194-239 223-280 (328)
111 KOG4739 Uncharacterized protei 94.9 0.015 3.3E-07 54.3 2.0 42 196-239 4-47 (233)
112 KOG0804 Cytoplasmic Zn-finger 94.9 0.011 2.5E-07 59.4 1.3 45 193-239 173-221 (493)
113 KOG4692 Predicted E3 ubiquitin 94.8 0.011 2.5E-07 57.6 1.2 49 191-239 418-466 (489)
114 KOG0828 Predicted E3 ubiquitin 94.7 0.012 2.7E-07 59.7 1.0 48 193-240 569-634 (636)
115 COG5194 APC11 Component of SCF 94.7 0.029 6.3E-07 43.2 2.8 33 34-68 48-81 (88)
116 KOG1571 Predicted E3 ubiquitin 94.5 0.021 4.6E-07 56.2 2.2 50 14-68 298-347 (355)
117 KOG0828 Predicted E3 ubiquitin 94.3 0.026 5.6E-07 57.4 2.2 50 18-68 568-634 (636)
118 KOG1493 Anaphase-promoting com 94.1 0.015 3.2E-07 44.4 0.2 46 23-68 22-81 (84)
119 KOG4275 Predicted E3 ubiquitin 94.0 0.011 2.4E-07 56.3 -0.9 44 19-68 298-342 (350)
120 smart00744 RINGv The RING-vari 93.9 0.032 7E-07 39.4 1.6 40 197-236 1-49 (49)
121 PF14570 zf-RING_4: RING/Ubox 93.9 0.051 1.1E-06 38.1 2.5 43 24-67 1-47 (48)
122 PF04641 Rtf2: Rtf2 RING-finge 93.8 0.06 1.3E-06 51.7 3.8 48 193-241 111-162 (260)
123 KOG1814 Predicted E3 ubiquitin 93.6 0.098 2.1E-06 52.4 4.8 47 191-237 180-237 (445)
124 KOG0827 Predicted E3 ubiquitin 93.5 0.042 9.1E-07 54.4 2.1 46 196-241 197-246 (465)
125 KOG4185 Predicted E3 ubiquitin 93.5 0.056 1.2E-06 52.7 2.9 44 196-239 4-54 (296)
126 KOG1812 Predicted E3 ubiquitin 93.4 0.17 3.7E-06 51.3 6.4 43 193-235 304-351 (384)
127 KOG1001 Helicase-like transcri 93.3 0.04 8.8E-07 59.6 1.8 46 22-68 455-500 (674)
128 PF14570 zf-RING_4: RING/Ubox 93.2 0.046 1E-06 38.3 1.4 42 198-239 1-47 (48)
129 KOG0826 Predicted E3 ubiquitin 93.1 0.072 1.6E-06 51.8 3.0 48 19-68 298-346 (357)
130 KOG3800 Predicted E3 ubiquitin 93.1 0.085 1.9E-06 50.5 3.4 50 197-246 2-57 (300)
131 KOG1571 Predicted E3 ubiquitin 93.0 0.043 9.4E-07 54.0 1.3 42 195-239 305-346 (355)
132 KOG3002 Zn finger protein [Gen 93.0 0.1 2.2E-06 51.0 3.9 48 17-69 44-92 (299)
133 PF11793 FANCL_C: FANCL C-term 93.0 0.022 4.8E-07 43.4 -0.6 45 195-239 2-65 (70)
134 KOG4275 Predicted E3 ubiquitin 93.0 0.022 4.7E-07 54.4 -0.8 41 195-239 300-341 (350)
135 KOG2817 Predicted E3 ubiquitin 92.6 0.098 2.1E-06 52.2 3.1 49 18-67 331-384 (394)
136 KOG3800 Predicted E3 ubiquitin 92.4 0.17 3.8E-06 48.4 4.4 46 23-69 2-52 (300)
137 KOG3039 Uncharacterized conser 92.2 0.13 2.8E-06 48.1 3.2 49 20-70 220-272 (303)
138 KOG1645 RING-finger-containing 92.1 0.064 1.4E-06 53.6 1.2 45 195-239 4-55 (463)
139 KOG4739 Uncharacterized protei 91.9 0.098 2.1E-06 48.9 2.1 43 22-68 4-48 (233)
140 COG5236 Uncharacterized conser 91.8 0.12 2.6E-06 50.5 2.7 53 16-68 56-108 (493)
141 COG5236 Uncharacterized conser 91.8 0.14 2.9E-06 50.2 3.0 46 193-238 59-106 (493)
142 KOG0826 Predicted E3 ubiquitin 91.5 0.1 2.3E-06 50.7 1.9 49 191-239 296-345 (357)
143 KOG1941 Acetylcholine receptor 91.5 0.069 1.5E-06 53.0 0.7 45 21-65 365-413 (518)
144 cd02342 ZZ_UBA_plant Zinc fing 91.5 0.02 4.4E-07 38.9 -2.1 36 312-347 1-37 (43)
145 PF02891 zf-MIZ: MIZ/SP-RING z 91.4 0.16 3.4E-06 36.0 2.3 46 21-66 2-50 (50)
146 KOG0827 Predicted E3 ubiquitin 91.4 0.11 2.4E-06 51.5 2.0 45 196-240 5-56 (465)
147 KOG1493 Anaphase-promoting com 91.1 0.058 1.3E-06 41.2 -0.2 43 197-239 22-80 (84)
148 KOG3161 Predicted E3 ubiquitin 91.1 0.13 2.9E-06 54.0 2.3 46 15-65 5-54 (861)
149 KOG3002 Zn finger protein [Gen 91.1 0.17 3.6E-06 49.5 2.9 57 193-256 46-104 (299)
150 KOG1001 Helicase-like transcri 90.9 0.088 1.9E-06 57.1 0.8 43 196-239 455-499 (674)
151 KOG4185 Predicted E3 ubiquitin 90.7 0.29 6.4E-06 47.6 4.3 46 21-67 3-54 (296)
152 COG5194 APC11 Component of SCF 90.3 0.16 3.5E-06 39.2 1.6 28 212-239 53-80 (88)
153 KOG1814 Predicted E3 ubiquitin 90.0 0.65 1.4E-05 46.7 5.9 49 19-67 182-239 (445)
154 KOG3970 Predicted E3 ubiquitin 89.9 0.48 1E-05 43.8 4.5 43 197-239 52-104 (299)
155 PF07800 DUF1644: Protein of u 89.8 0.45 9.7E-06 41.8 4.1 54 20-73 1-96 (162)
156 KOG2930 SCF ubiquitin ligase, 89.1 0.24 5.3E-06 40.1 1.8 46 20-67 45-107 (114)
157 PF08746 zf-RING-like: RING-li 88.7 0.52 1.1E-05 32.2 3.0 40 24-63 1-43 (43)
158 COG5219 Uncharacterized conser 88.7 0.12 2.7E-06 56.4 -0.2 48 193-240 1467-1523(1525)
159 KOG4362 Transcriptional regula 88.5 0.072 1.6E-06 56.9 -2.0 54 15-68 15-69 (684)
160 KOG2114 Vacuolar assembly/sort 88.4 0.23 5E-06 53.9 1.6 42 21-67 840-882 (933)
161 PF04641 Rtf2: Rtf2 RING-finge 88.1 1.1 2.4E-05 43.0 5.9 50 18-70 110-163 (260)
162 KOG1428 Inhibitor of type V ad 87.9 1.3 2.7E-05 51.1 6.8 62 19-85 3484-3556(3738)
163 COG5175 MOT2 Transcriptional r 87.8 0.47 1E-05 46.4 3.2 49 20-69 13-65 (480)
164 PF10367 Vps39_2: Vacuolar sor 87.4 0.23 4.9E-06 40.5 0.7 33 17-49 74-108 (109)
165 KOG2114 Vacuolar assembly/sort 87.0 0.36 7.9E-06 52.5 2.1 40 196-238 841-881 (933)
166 PF10367 Vps39_2: Vacuolar sor 86.4 0.28 6.2E-06 39.9 0.8 31 194-224 77-109 (109)
167 PF03854 zf-P11: P-11 zinc fin 85.2 0.39 8.4E-06 33.4 0.8 43 197-241 4-47 (50)
168 KOG4445 Uncharacterized conser 84.7 0.29 6.3E-06 47.1 0.0 49 20-68 114-186 (368)
169 KOG2817 Predicted E3 ubiquitin 84.7 0.55 1.2E-05 47.0 1.9 49 190-238 329-383 (394)
170 KOG1940 Zn-finger protein [Gen 84.1 0.66 1.4E-05 44.7 2.2 43 21-65 158-204 (276)
171 KOG2930 SCF ubiquitin ligase, 84.1 0.41 8.8E-06 38.8 0.6 27 212-238 80-106 (114)
172 COG5175 MOT2 Transcriptional r 83.9 0.72 1.6E-05 45.1 2.3 46 196-241 15-65 (480)
173 KOG2113 Predicted RNA binding 83.8 1.5 3.2E-05 42.7 4.3 46 192-239 340-386 (394)
174 KOG4362 Transcriptional regula 83.3 0.52 1.1E-05 50.5 1.2 47 193-239 19-68 (684)
175 PF05290 Baculo_IE-1: Baculovi 83.2 0.91 2E-05 38.7 2.4 50 20-69 79-133 (140)
176 PHA02825 LAP/PHD finger-like p 82.8 1.6 3.4E-05 38.5 3.7 49 19-68 6-59 (162)
177 KOG3161 Predicted E3 ubiquitin 81.9 0.41 9E-06 50.5 -0.2 38 194-233 10-51 (861)
178 PHA02862 5L protein; Provision 81.3 1.5 3.2E-05 37.9 3.0 46 22-68 3-53 (156)
179 cd02334 ZZ_dystrophin Zinc fin 81.1 0.18 4E-06 35.6 -2.2 33 312-344 1-34 (49)
180 KOG2932 E3 ubiquitin ligase in 81.0 0.68 1.5E-05 44.8 0.9 42 196-239 91-133 (389)
181 PF05290 Baculo_IE-1: Baculovi 80.9 0.94 2E-05 38.6 1.6 47 195-241 80-133 (140)
182 KOG1941 Acetylcholine receptor 79.2 0.52 1.1E-05 47.0 -0.5 46 193-238 363-414 (518)
183 KOG3970 Predicted E3 ubiquitin 77.8 3.3 7.2E-05 38.4 4.3 50 20-69 49-106 (299)
184 cd02344 ZZ_HERC2 Zinc finger, 77.5 0.21 4.6E-06 34.6 -2.7 33 312-344 1-34 (45)
185 COG5109 Uncharacterized conser 77.1 1.6 3.5E-05 42.4 2.1 50 17-66 332-385 (396)
186 KOG1952 Transcription factor N 75.8 2.2 4.7E-05 46.7 3.0 50 189-238 185-245 (950)
187 PF12906 RINGv: RING-variant d 74.5 1.4 3E-05 30.7 0.7 40 24-63 1-47 (47)
188 PHA02825 LAP/PHD finger-like p 74.4 3.1 6.8E-05 36.6 3.1 47 192-239 5-58 (162)
189 PF02891 zf-MIZ: MIZ/SP-RING z 71.7 1 2.2E-05 31.9 -0.5 42 196-238 3-50 (50)
190 PF08746 zf-RING-like: RING-li 71.6 2.6 5.6E-05 28.8 1.5 38 198-235 1-43 (43)
191 PHA03096 p28-like protein; Pro 71.2 2.3 5.1E-05 41.3 1.7 44 22-65 179-231 (284)
192 PF07191 zinc-ribbons_6: zinc- 71.2 0.69 1.5E-05 35.1 -1.5 40 195-239 1-40 (70)
193 KOG3579 Predicted E3 ubiquitin 71.0 1.6 3.4E-05 41.9 0.4 37 20-56 267-307 (352)
194 KOG4445 Uncharacterized conser 69.9 1.2 2.5E-05 43.1 -0.7 31 195-225 115-148 (368)
195 KOG0298 DEAD box-containing he 69.1 1.3 2.9E-05 50.4 -0.5 51 15-67 1147-1198(1394)
196 KOG1100 Predicted E3 ubiquitin 69.1 2.5 5.4E-05 39.2 1.4 38 198-239 161-199 (207)
197 KOG0298 DEAD box-containing he 69.1 1.2 2.5E-05 50.9 -1.0 46 194-239 1152-1198(1394)
198 cd02339 ZZ_Mind_bomb Zinc fing 68.9 0.46 1E-05 32.9 -2.6 32 312-343 1-33 (45)
199 KOG1100 Predicted E3 ubiquitin 65.5 3.4 7.4E-05 38.3 1.5 39 24-68 161-200 (207)
200 COG5220 TFB3 Cdk activating ki 65.3 1.5 3.3E-05 41.0 -0.8 46 194-239 9-63 (314)
201 cd02341 ZZ_ZZZ3 Zinc finger, Z 64.7 0.73 1.6E-05 32.4 -2.4 39 313-353 2-43 (48)
202 KOG1428 Inhibitor of type V ad 64.7 9.2 0.0002 44.6 4.7 58 193-256 3484-3554(3738)
203 PHA03096 p28-like protein; Pro 62.4 3.3 7.1E-05 40.3 0.8 42 196-237 179-231 (284)
204 KOG3113 Uncharacterized conser 62.1 23 0.00051 33.6 6.2 48 19-70 109-160 (293)
205 KOG2932 E3 ubiquitin ligase in 61.9 3.7 8.1E-05 39.9 1.0 43 22-68 91-134 (389)
206 PF03854 zf-P11: P-11 zinc fin 61.8 3.7 8E-05 28.6 0.7 32 36-69 15-47 (50)
207 PF05605 zf-Di19: Drought indu 60.3 5.3 0.00012 28.4 1.4 40 20-66 1-40 (54)
208 PF13834 DUF4193: Domain of un 60.0 8.6 0.00019 31.2 2.6 51 171-221 46-98 (99)
209 COG5109 Uncharacterized conser 59.0 4.6 0.0001 39.3 1.1 47 191-237 332-384 (396)
210 PF05883 Baculo_RING: Baculovi 58.4 3.7 8.1E-05 35.2 0.4 45 193-237 24-77 (134)
211 cd02340 ZZ_NBR1_like Zinc fing 58.2 0.65 1.4E-05 31.8 -3.5 32 312-344 1-33 (43)
212 COG5220 TFB3 Cdk activating ki 56.0 5.7 0.00012 37.3 1.1 48 20-68 9-64 (314)
213 PF00569 ZZ: Zinc finger, ZZ t 56.0 0.13 2.9E-06 35.7 -7.4 36 308-343 1-37 (46)
214 PF07975 C1_4: TFIIH C1-like d 55.5 11 0.00023 26.9 2.2 25 212-236 26-50 (51)
215 KOG1815 Predicted E3 ubiquitin 55.2 15 0.00032 38.1 4.2 34 193-226 68-102 (444)
216 KOG1812 Predicted E3 ubiquitin 55.1 9 0.0002 38.9 2.6 40 194-233 145-194 (384)
217 PF07800 DUF1644: Protein of u 53.5 5.9 0.00013 34.9 0.8 21 194-214 1-21 (162)
218 KOG3268 Predicted E3 ubiquitin 52.0 10 0.00022 34.0 2.0 32 37-68 188-228 (234)
219 KOG1952 Transcription factor N 51.4 12 0.00026 41.2 2.9 50 19-68 189-247 (950)
220 PF05883 Baculo_RING: Baculovi 51.1 7.1 0.00015 33.5 0.9 32 21-52 26-66 (134)
221 KOG1815 Predicted E3 ubiquitin 50.1 9.6 0.00021 39.5 1.9 36 19-54 68-104 (444)
222 cd02338 ZZ_PCMF_like Zinc fing 49.6 1.3 2.7E-05 31.2 -3.3 33 312-344 1-34 (49)
223 PHA02862 5L protein; Provision 49.5 14 0.00031 32.1 2.5 43 196-239 3-52 (156)
224 KOG3113 Uncharacterized conser 49.4 39 0.00085 32.1 5.5 47 193-241 109-159 (293)
225 KOG2169 Zn-finger transcriptio 49.0 15 0.00033 39.9 3.3 66 190-255 301-371 (636)
226 KOG2979 Protein involved in DN 48.2 9.4 0.0002 36.3 1.3 46 21-66 176-222 (262)
227 PF13240 zinc_ribbon_2: zinc-r 48.1 6.9 0.00015 22.9 0.3 21 218-238 2-22 (23)
228 KOG3579 Predicted E3 ubiquitin 46.2 8.4 0.00018 37.1 0.7 34 193-226 266-303 (352)
229 KOG2068 MOT2 transcription fac 44.6 19 0.0004 35.6 2.8 47 196-242 250-300 (327)
230 smart00291 ZnF_ZZ Zinc-binding 44.2 1.5 3.2E-05 30.0 -3.5 35 309-344 2-37 (44)
231 KOG2462 C2H2-type Zn-finger pr 43.6 11 0.00023 36.3 0.9 49 193-241 159-227 (279)
232 PF10272 Tmpp129: Putative tra 43.4 16 0.00035 36.6 2.2 30 39-68 311-351 (358)
233 PF10235 Cript: Microtubule-as 43.3 15 0.00032 29.4 1.5 35 196-239 45-79 (90)
234 KOG4582 Uncharacterized conser 41.7 6.5 0.00014 38.1 -0.8 39 306-344 142-186 (278)
235 KOG3899 Uncharacterized conser 41.0 15 0.00033 35.5 1.6 30 39-68 325-365 (381)
236 cd00350 rubredoxin_like Rubred 39.7 19 0.00041 22.9 1.4 11 228-238 16-26 (33)
237 COG3813 Uncharacterized protei 38.7 24 0.00053 26.8 2.0 26 214-241 28-53 (84)
238 KOG2034 Vacuolar sorting prote 37.1 19 0.00042 39.9 1.7 38 16-53 812-851 (911)
239 KOG1280 Uncharacterized conser 36.6 6 0.00013 39.1 -1.9 58 307-364 4-68 (381)
240 PF14446 Prok-RING_1: Prokaryo 36.3 31 0.00067 24.9 2.1 30 21-50 5-38 (54)
241 COG5183 SSM4 Protein involved 36.3 34 0.00073 37.8 3.3 49 20-68 11-66 (1175)
242 PF14569 zf-UDP: Zinc-binding 36.2 39 0.00085 26.2 2.8 47 21-68 9-62 (80)
243 COG3880 Modulator of heat shoc 33.9 30 0.00065 30.8 2.1 69 311-401 74-143 (176)
244 KOG2169 Zn-finger transcriptio 32.7 41 0.0009 36.6 3.4 54 15-68 300-356 (636)
245 KOG2231 Predicted E3 ubiquitin 31.9 31 0.00066 37.5 2.2 46 23-68 2-52 (669)
246 PF15616 TerY-C: TerY-C metal 31.9 29 0.00062 29.8 1.6 46 15-68 71-116 (131)
247 PRK04023 DNA polymerase II lar 31.7 41 0.00089 38.1 3.2 63 193-258 624-691 (1121)
248 KOG2034 Vacuolar sorting prote 31.4 17 0.00038 40.3 0.3 35 191-225 813-849 (911)
249 cd00065 FYVE FYVE domain; Zinc 30.5 29 0.00063 24.5 1.3 29 197-225 4-36 (57)
250 PF13248 zf-ribbon_3: zinc-rib 30.3 21 0.00046 21.4 0.4 10 228-237 15-24 (26)
251 PF10272 Tmpp129: Putative tra 29.9 28 0.00062 35.0 1.5 26 215-240 313-351 (358)
252 KOG3268 Predicted E3 ubiquitin 29.3 25 0.00055 31.6 0.9 45 196-240 166-228 (234)
253 PLN02189 cellulose synthase 29.2 35 0.00076 38.9 2.2 46 22-68 35-87 (1040)
254 PF06906 DUF1272: Protein of u 29.2 57 0.0012 23.6 2.5 45 23-71 7-55 (57)
255 PF06869 DUF1258: Protein of u 28.4 52 0.0011 31.4 2.9 58 214-272 17-76 (258)
256 PF10497 zf-4CXXC_R1: Zinc-fin 28.1 37 0.0008 27.9 1.6 25 214-238 37-70 (105)
257 PF01363 FYVE: FYVE zinc finge 27.9 14 0.00031 27.4 -0.8 32 194-225 8-43 (69)
258 smart00154 ZnF_AN1 AN1-like Zi 27.4 40 0.00086 22.4 1.4 22 24-45 1-24 (39)
259 PLN02436 cellulose synthase A 27.3 44 0.00094 38.3 2.5 46 22-68 37-89 (1094)
260 KOG0314 Predicted E3 ubiquitin 27.2 62 0.0013 33.5 3.4 47 16-65 214-263 (448)
261 PF06844 DUF1244: Protein of u 27.1 34 0.00073 25.6 1.1 12 42-53 11-22 (68)
262 PF14599 zinc_ribbon_6: Zinc-r 27.0 5.6 0.00012 29.4 -3.0 12 311-322 48-59 (61)
263 PF13719 zinc_ribbon_5: zinc-r 26.7 39 0.00085 22.1 1.3 13 22-34 3-15 (37)
264 smart00064 FYVE Protein presen 26.2 44 0.00096 24.5 1.7 30 196-225 11-44 (68)
265 KOG2042 Ubiquitin fusion degra 25.9 69 0.0015 36.2 3.7 65 195-259 870-935 (943)
266 PF09538 FYDLN_acid: Protein o 25.7 41 0.00089 27.8 1.5 16 18-33 6-21 (108)
267 PF00628 PHD: PHD-finger; Int 25.6 21 0.00045 24.6 -0.2 40 197-236 1-49 (51)
268 cd02249 ZZ Zinc finger, ZZ typ 25.5 5.6 0.00012 27.3 -3.1 32 313-345 2-34 (46)
269 PLN02638 cellulose synthase A 25.4 50 0.0011 37.8 2.6 46 22-68 18-70 (1079)
270 PF09986 DUF2225: Uncharacteri 24.8 67 0.0014 29.8 2.9 56 193-248 3-68 (214)
271 PF10571 UPF0547: Uncharacteri 24.5 29 0.00063 21.0 0.3 8 198-205 3-10 (26)
272 PF14353 CpXC: CpXC protein 24.2 52 0.0011 27.6 1.9 48 21-68 1-49 (128)
273 PF04710 Pellino: Pellino; In 24.2 25 0.00055 35.5 0.0 48 21-68 277-339 (416)
274 PLN02195 cellulose synthase A 24.0 60 0.0013 36.8 2.8 46 22-68 7-59 (977)
275 KOG3899 Uncharacterized conser 23.6 33 0.00071 33.3 0.6 27 213-239 325-364 (381)
276 TIGR00622 ssl1 transcription f 23.5 62 0.0014 26.9 2.2 41 196-236 56-110 (112)
277 KOG4718 Non-SMC (structural ma 23.3 48 0.001 30.7 1.6 45 21-67 181-226 (235)
278 KOG2979 Protein involved in DN 23.0 31 0.00067 32.9 0.3 44 195-238 176-222 (262)
279 COG4640 Predicted membrane pro 22.9 51 0.0011 33.4 1.8 39 216-254 2-40 (465)
280 PF09297 zf-NADH-PPase: NADH p 22.8 27 0.00059 21.9 -0.1 24 215-238 3-30 (32)
281 COG4647 AcxC Acetone carboxyla 22.8 39 0.00085 28.7 0.8 21 26-46 62-82 (165)
282 KOG3842 Adaptor protein Pellin 22.5 34 0.00074 33.5 0.5 45 21-66 290-350 (429)
283 PF04216 FdhE: Protein involve 21.8 23 0.00049 34.5 -0.9 46 194-239 171-221 (290)
284 PRK11088 rrmA 23S rRNA methylt 21.4 52 0.0011 31.4 1.5 24 21-44 2-28 (272)
285 PF01428 zf-AN1: AN1-like Zinc 21.3 51 0.0011 22.2 1.1 24 24-47 1-27 (43)
286 PLN02400 cellulose synthase 21.0 62 0.0013 37.2 2.2 46 22-68 37-89 (1085)
287 PRK06266 transcription initiat 21.0 54 0.0012 29.6 1.4 15 227-241 134-148 (178)
288 TIGR01562 FdhE formate dehydro 21.0 33 0.00072 33.8 0.1 45 194-238 183-233 (305)
289 KOG4718 Non-SMC (structural ma 20.7 44 0.00095 31.0 0.8 46 196-241 182-228 (235)
290 PLN02915 cellulose synthase A 20.4 72 0.0016 36.5 2.5 48 20-68 14-68 (1044)
291 smart00647 IBR In Between Ring 20.1 39 0.00084 24.2 0.3 15 212-226 45-59 (64)
No 1
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=2.7e-12 Score=117.30 Aligned_cols=201 Identities=14% Similarity=0.121 Sum_probs=119.1
Q ss_pred cccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCCchhHHHHHHHHHHchHHHHHHHHH
Q 039128 16 EKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFPSICVMLHRLLLKMYPIAYKMREIE 95 (404)
Q Consensus 16 ~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~ 95 (404)
..+.+...|++|+..+++||.++=||+||++||.+++..+++ .....|..+ +.+.|.++
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaqKk------------------e~arrlkay---ekqrr~ee 96 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQKK------------------EIARRLKAY---EKQRRAEE 96 (303)
T ss_pred cccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHHHHH------------------HHHHHHHHH---HHHHHhhh
Confidence 455677899999999999999999999999999998763211 111122211 22221111
Q ss_pred HHHHHhhhc---CCCCCCCCC--------------------CCCCCccCCCcCC----CccccccccccCCCCCCCCcc-
Q 039128 96 ILEDERRYD---FFSPQLDNH--------------------ACGPLVDNECHHL----NDSMQFSRIFCGSSSKTGSHE- 147 (404)
Q Consensus 96 ~~e~~~~~~---~~~p~~~~~--------------------~~g~~~~~~~~~~----~~~~~~~~s~~~~ss~~~s~e- 147 (404)
..+..+... .+..+|... .++....+ .... ......++++|.|+..|....
T Consensus 97 d~e~qra~~q~~~~~~eF~~~e~~~~s~al~r~~~~~~ae~~a~~~~~~-~~~~sn~~~d~~k~lpsFWlPs~tP~A~at 175 (303)
T KOG3039|consen 97 DKEEQRAMSQKARRLDEFDQQESTPESSALPRNPDTNSAEDAASFHGAN-SVSTSNMEEDKLKTLPSFWLPSLTPTAAAT 175 (303)
T ss_pred hHHHHHHHhhhHHHHHHHHhhccccccccccCCCCcchhhhccCccccC-CccccCccccccccccceecCccCchhhhh
Confidence 111111110 011112110 00000001 0000 011112788999888875543
Q ss_pred hhhhcccccccCCCCCCcccccccccccCCCCCCCccccccc--cccccceeeeecccCccCce----ecccCCcchHHh
Q 039128 148 NMEQLESVSVAMNNGTSEQSSIEGITVAGKKLPPNELNHNCK--QISIVDVLCTACKQLLIHPV----VLNCGHVYCETC 221 (404)
Q Consensus 148 ~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~C~iC~~~~~~p~----~l~CgH~fC~~C 221 (404)
.++.+..+..+... ..+++.++|..+.|+..+.+.... ......+.||||.+.|++.+ .-+|||+||..|
T Consensus 176 klekP~~~v~CP~s----~kplklkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ec 251 (303)
T KOG3039|consen 176 KLEKPSTTVVCPVS----GKPLKLKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKEC 251 (303)
T ss_pred cccCCCceeeccCC----CCccchhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEeccCCcEeeHHH
Confidence 34444444433322 346778889998887754433321 22336799999999999864 338999999999
Q ss_pred hcccccccCCCccCCcccCCC
Q 039128 222 IITPTVQQLKCEVCQCLNPNG 242 (404)
Q Consensus 222 l~~~~~~~~~CP~Cr~~~~~~ 242 (404)
++.++.....||+|..++.+.
T Consensus 252 vEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 252 VEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred HHHhccccccccCCCCcCccc
Confidence 999999999999999987653
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.28 E-value=2.7e-12 Score=87.97 Aligned_cols=40 Identities=43% Similarity=0.937 Sum_probs=32.2
Q ss_pred cccccccccCcEEccCCCcccHHHHHHhHcCCCC--CCCCCC
Q 039128 24 CCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRE--SHCPIC 63 (404)
Q Consensus 24 C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~--~~CP~C 63 (404)
|+||+++|.+||+++|||+||..||.++|..... ..||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999986543 479987
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.18 E-value=7.1e-12 Score=85.91 Aligned_cols=38 Identities=34% Similarity=0.941 Sum_probs=29.3
Q ss_pred eeecccCccCceecccCCcchHHhhcccccc----cCCCccC
Q 039128 198 CTACKQLLIHPVVLNCGHVYCETCIITPTVQ----QLKCEVC 235 (404)
Q Consensus 198 C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~----~~~CP~C 235 (404)
|+||+++|.+||+|+|||+||..||.++.+. ...||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999997432 2679987
No 4
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=1.5e-10 Score=115.77 Aligned_cols=66 Identities=27% Similarity=0.665 Sum_probs=57.2
Q ss_pred CCccccccccCCcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 2 EDQTVLTVKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
.|++.+..+....++.++..+.|+||+++|.+||+++|||+||..||..++.. ...||+|+..+..
T Consensus 7 ~D~tDw~~t~~~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 7 TDSSDWLTTPIPSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQE 72 (397)
T ss_pred CCchhhccCCcccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC--CCCCCCCCCcccc
Confidence 45666666666778999999999999999999999999999999999999874 4579999998864
No 5
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.08 E-value=7e-11 Score=88.15 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=53.7
Q ss_pred ceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHH
Q 039128 195 DVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLE 255 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~ 255 (404)
++.|+||++++.+|++++|||+||+.||..++.....||+|+..+.......|..|.+.++
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~ 61 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQ 61 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHH
Confidence 3679999999999999999999999999999777789999999986666677888888775
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.02 E-value=2.8e-10 Score=102.34 Aligned_cols=57 Identities=30% Similarity=0.771 Sum_probs=47.4
Q ss_pred CcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcC--------------CCCCCCCCCCcCCCC
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNG--------------LRESHCPICRRPYNH 69 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~--------------~~~~~CP~CR~~~~~ 69 (404)
..+-++.+.+.|+||++.+.+||+++|||+||..||..|+.. .+...||+||..+..
T Consensus 10 ~~~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 10 TTLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred ceeccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 345556678999999999999999999999999999998742 134579999998864
No 7
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.94 E-value=4.6e-10 Score=112.24 Aligned_cols=67 Identities=22% Similarity=0.490 Sum_probs=59.1
Q ss_pred cccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHHHh
Q 039128 192 SIVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEEQF 258 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~ 258 (404)
++..+.|+||.++|.+|++++|||+||..||..++.....||+|+..+.......|..|.++++.|.
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~ 89 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFK 89 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHH
Confidence 3567899999999999999999999999999998777778999999986656788999999997654
No 8
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.94 E-value=3.4e-10 Score=83.14 Aligned_cols=60 Identities=27% Similarity=0.568 Sum_probs=34.5
Q ss_pred ccceeeeecccCccCceec-ccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVL-NCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFL 254 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l 254 (404)
++-+.|++|.++|.+||.+ .|.|+||+.|+...+.. .||+|+.+......++|..|+++|
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS----HHHHHHH
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHHhhhhhhccC
Confidence 4567899999999999865 79999999999886553 499999998777789999999886
No 9
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.94 E-value=6.5e-10 Score=104.04 Aligned_cols=66 Identities=24% Similarity=0.563 Sum_probs=58.5
Q ss_pred CCccccccccCCcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 2 EDQTVLTVKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
.|++.++.+....+..|..-++|.||..++..|+.++|||+||.-||..++. ...-||+||.....
T Consensus 6 T~~SD~~~T~IPSL~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~--~qp~CP~Cr~~~~e 71 (391)
T COG5432 6 TDPSDWNQTKIPSLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG--TQPFCPVCREDPCE 71 (391)
T ss_pred CCccccccccCcchhcchhHHHhhhhhheeecceecccccchhHHHHHHHhc--CCCCCccccccHHh
Confidence 4566777788888999999999999999999999999999999999999998 55679999998763
No 10
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.92 E-value=5.8e-10 Score=106.43 Aligned_cols=77 Identities=18% Similarity=0.484 Sum_probs=61.1
Q ss_pred ccccccccCCcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCC-CchhHHHHHHHH
Q 039128 4 QTVLTVKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHF-PSICVMLHRLLL 82 (404)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~-~~~~~~l~~~l~ 82 (404)
+..++..+.+.+..|...++|-||.++|.-|+.++|||+||.-||..++. ....||.|+.++... ...+..+..+++
T Consensus 6 ~Sdw~~tsipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~--~~p~CP~C~~~~~Es~Lr~n~il~Eiv~ 83 (442)
T KOG0287|consen 6 ESDWPPTSIPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS--YKPQCPTCCVTVTESDLRNNRILDEIVK 83 (442)
T ss_pred cccCCCccCchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc--cCCCCCceecccchhhhhhhhHHHHHHH
Confidence 44455566777899999999999999999999999999999999999998 567799999998752 223333444444
No 11
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.91 E-value=1.8e-09 Score=80.53 Aligned_cols=46 Identities=20% Similarity=0.455 Sum_probs=42.0
Q ss_pred CcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 21 SFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 21 ~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
++.|+||.+++.+||+++|||+||+.||.+|+.. ...||+|+..+.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 4789999999999999999999999999999984 567999999875
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.90 E-value=9e-10 Score=74.30 Aligned_cols=38 Identities=42% Similarity=1.079 Sum_probs=32.6
Q ss_pred cccccccccCc-EEccCCCcccHHHHHHhHcCCCCCCCCCC
Q 039128 24 CCICLDLLYKP-IVLSCGHISCFWCVHRSMNGLRESHCPIC 63 (404)
Q Consensus 24 C~IC~~~l~~P-v~l~CGH~fC~~Ci~~~~~~~~~~~CP~C 63 (404)
|+||++.+.+| +.++|||+||..||.+++.. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 89999999999 67999999999999999885 4689987
No 13
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.88 E-value=1e-09 Score=98.72 Aligned_cols=49 Identities=35% Similarity=0.653 Sum_probs=42.4
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhccccc----------------ccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTV----------------QQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~----------------~~~~CP~Cr~~~~~ 241 (404)
.+++.|+||++.+.+|++++|||+||+.||..|.. ....||+||..+..
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 46789999999999999999999999999998742 24689999998754
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.87 E-value=5.1e-10 Score=75.52 Aligned_cols=38 Identities=42% Similarity=0.954 Sum_probs=33.3
Q ss_pred eeecccCccCc-eecccCCcchHHhhcccccccCCCccC
Q 039128 198 CTACKQLLIHP-VVLNCGHVYCETCIITPTVQQLKCEVC 235 (404)
Q Consensus 198 C~iC~~~~~~p-~~l~CgH~fC~~Cl~~~~~~~~~CP~C 235 (404)
|+||++.+.+| +.++|||+||..|+.++.+....||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 578999999999999997778899987
No 15
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.84 E-value=1.7e-09 Score=83.45 Aligned_cols=65 Identities=22% Similarity=0.169 Sum_probs=53.4
Q ss_pred cceeeeecccCccCceecccCCcchHHhhcccccc-cCCCccCCcccCCCCCcchHHHHHHHHHHh
Q 039128 194 VDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQ-QLKCEVCQCLNPNGFPKVCLELDQFLEEQF 258 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~ 258 (404)
+.+.|||+.+++.+||++++||+|++.+|..|+.. ...||+|+..+.......|..|++.|+++.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWC 68 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHH
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHH
Confidence 46899999999999999999999999999999876 899999999987777789999999997665
No 16
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.82 E-value=9.7e-10 Score=104.91 Aligned_cols=66 Identities=18% Similarity=0.354 Sum_probs=59.9
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHHHh
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEEQF 258 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~ 258 (404)
..-+.|-||.++|.-|+.+||||+||.-||..++.....||.|+..+....++-|..|+++|+.|-
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLN 86 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999998877889999999997653
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.81 E-value=2.7e-09 Score=72.61 Aligned_cols=40 Identities=35% Similarity=0.958 Sum_probs=36.7
Q ss_pred cccccccccCcE-EccCCCcccHHHHHHhHcCCCCCCCCCC
Q 039128 24 CCICLDLLYKPI-VLSCGHISCFWCVHRSMNGLRESHCPIC 63 (404)
Q Consensus 24 C~IC~~~l~~Pv-~l~CGH~fC~~Ci~~~~~~~~~~~CP~C 63 (404)
|+||++.+.+|+ +++|||.||..||.+|+...+...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 8999999999999999986567779987
No 18
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.78 E-value=3.7e-09 Score=75.30 Aligned_cols=47 Identities=36% Similarity=0.905 Sum_probs=40.5
Q ss_pred CCcccccccccccCcEEccCCCc-ccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 20 HSFRCCICLDLLYKPIVLSCGHI-SCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l~CGH~-fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
++..|.||++...++++++|||. ||..|+.+++. ....||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 35789999999999999999999 99999999988 6677999999875
No 19
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4e-09 Score=96.61 Aligned_cols=52 Identities=33% Similarity=0.780 Sum_probs=45.3
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHhHcCC-CCCCCCCCCcCCCCC
Q 039128 19 SHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGL-RESHCPICRRPYNHF 70 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~-~~~~CP~CR~~~~~~ 70 (404)
...+.|-||++..++||++.|||.||..||.+|+... +...||+|+..+...
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 4569999999999999999999999999999999854 445689999988753
No 20
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.72 E-value=2.8e-09 Score=75.91 Aligned_cols=46 Identities=30% Similarity=0.664 Sum_probs=40.9
Q ss_pred ceeeeecccCccCceecccCCc-chHHhhcccccccCCCccCCcccC
Q 039128 195 DVLCTACKQLLIHPVVLNCGHV-YCETCIITPTVQQLKCEVCQCLNP 240 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~ 240 (404)
+..|.||++...+++.+||||. ||..|+.++......||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4679999999999999999999 999999999888899999999863
No 21
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.71 E-value=4.1e-09 Score=72.95 Aligned_cols=40 Identities=35% Similarity=0.884 Sum_probs=34.0
Q ss_pred cccccccccc---CcEEccCCCcccHHHHHHhHcCCCCCCCCCCC
Q 039128 23 RCCICLDLLY---KPIVLSCGHISCFWCVHRSMNGLRESHCPICR 64 (404)
Q Consensus 23 ~C~IC~~~l~---~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR 64 (404)
.|+||++.+. .++.++|||.||..||.+|+.. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh--CCcCCccC
Confidence 6999999984 5677899999999999999984 46899996
No 22
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.1e-08 Score=93.69 Aligned_cols=50 Identities=28% Similarity=0.543 Sum_probs=43.8
Q ss_pred cccceeeeecccCccCceecccCCcchHHhhcccc---cccCCCccCCcccCC
Q 039128 192 SIVDVLCTACKQLLIHPVVLNCGHVYCETCIITPT---VQQLKCEVCQCLNPN 241 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~---~~~~~CP~Cr~~~~~ 241 (404)
....+.|.||++.-.+||++.|||.||+.||.+|+ .....||+|+..+..
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 35789999999999999999999999999999995 356679999997744
No 23
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.71 E-value=2.2e-08 Score=77.20 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=46.8
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCC-CchhHHHHHHHHHH
Q 039128 19 SHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHF-PSICVMLHRLLLKM 84 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~-~~~~~~l~~~l~~~ 84 (404)
.+.|.|||+.++|.+||++++||+|++.+|..|+.. +...||+|+..+... ...+..++..++.+
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~ 67 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSESDLIPNRALKSAIEEW 67 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGGGSEE-HHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcccceECHHHHHHHHHH
Confidence 468999999999999999999999999999999985 467799999988752 22334455555444
No 24
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.69 E-value=6.7e-09 Score=71.29 Aligned_cols=37 Identities=35% Similarity=0.890 Sum_probs=23.2
Q ss_pred cccccccccC----cEEccCCCcccHHHHHHhHcCC--CCCCCC
Q 039128 24 CCICLDLLYK----PIVLSCGHISCFWCVHRSMNGL--RESHCP 61 (404)
Q Consensus 24 C~IC~~~l~~----Pv~l~CGH~fC~~Ci~~~~~~~--~~~~CP 61 (404)
||||.+ +.+ |++|+|||+||+.||.+++... +.+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 9999999999999999988843 456676
No 25
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.2e-08 Score=96.15 Aligned_cols=52 Identities=27% Similarity=0.768 Sum_probs=45.3
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCCc
Q 039128 19 SHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFPS 72 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~~ 72 (404)
.....|.||++...+|-.++|||+||..||.+|.. .+..||+||..+.+...
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~--ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCS--EKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHc--cccCCCcccccCCCcce
Confidence 45589999999999999999999999999999998 44569999999876443
No 26
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1e-08 Score=96.62 Aligned_cols=53 Identities=23% Similarity=0.579 Sum_probs=47.0
Q ss_pred ccccccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 189 KQISIVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 189 ~~~~~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
+.+.+....|.+|++...+|..+||||.||+.||..|......||+||..+..
T Consensus 233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 34556778999999999999999999999999999998888889999998743
No 27
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.3e-08 Score=89.50 Aligned_cols=48 Identities=33% Similarity=0.987 Sum_probs=41.5
Q ss_pred CCcccccccccccC--cEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLYK--PIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~~--Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
..+.||||++.+.+ ||.+.|||+||+.||...++ ....||+|++.+.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk--~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK--NTNKCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHH--hCCCCCCcccccch
Confidence 34899999999864 78899999999999999988 56779999997764
No 28
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.63 E-value=7.1e-09 Score=76.21 Aligned_cols=49 Identities=37% Similarity=0.954 Sum_probs=28.1
Q ss_pred cccCCCcccccccccccCcEE-ccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 16 EKISHSFRCCICLDLLYKPIV-LSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 16 ~~l~~~l~C~IC~~~l~~Pv~-l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
+.+++.++|++|.++|.+||. ..|.|+||+.||...+. ..||+|+.+..
T Consensus 2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~----~~CPvC~~Paw 51 (65)
T PF14835_consen 2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG----SECPVCHTPAW 51 (65)
T ss_dssp HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT----TB-SSS--B-S
T ss_pred hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC----CCCCCcCChHH
Confidence 346678999999999999986 56999999999977544 34999999875
No 29
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.63 E-value=5e-09 Score=72.56 Aligned_cols=40 Identities=33% Similarity=0.703 Sum_probs=34.6
Q ss_pred eeeecccCcc---CceecccCCcchHHhhcccccccCCCccCC
Q 039128 197 LCTACKQLLI---HPVVLNCGHVYCETCIITPTVQQLKCEVCQ 236 (404)
Q Consensus 197 ~C~iC~~~~~---~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr 236 (404)
.|+||++.+. .++.++|||.||..||..|+.....||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999985 456789999999999999988888999997
No 30
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.59 E-value=1.4e-08 Score=69.12 Aligned_cols=38 Identities=34% Similarity=0.943 Sum_probs=35.0
Q ss_pred eeecccCccCce-ecccCCcchHHhhccccc--ccCCCccC
Q 039128 198 CTACKQLLIHPV-VLNCGHVYCETCIITPTV--QQLKCEVC 235 (404)
Q Consensus 198 C~iC~~~~~~p~-~l~CgH~fC~~Cl~~~~~--~~~~CP~C 235 (404)
|+||.+.+.+|+ +++|||.||..|+.++.. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999865 77889987
No 31
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.6e-08 Score=88.88 Aligned_cols=49 Identities=29% Similarity=0.634 Sum_probs=42.6
Q ss_pred ccceeeeecccCccC--ceecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIH--PVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~--p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
+.-+.||||++-+.+ |+.+.|||+||+.||+...+....||+|++.+..
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 455889999998875 5678999999999999999999999999987644
No 32
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.58 E-value=4e-08 Score=92.12 Aligned_cols=50 Identities=30% Similarity=0.854 Sum_probs=41.3
Q ss_pred cCCCcccccccccccCc--------EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 18 ISHSFRCCICLDLLYKP--------IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 18 l~~~l~C~IC~~~l~~P--------v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
..+...|+||++.+.++ ++++|||.||..||..|+. ....||+||..+..
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~~~ 228 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCEeeE
Confidence 34578999999987653 5678999999999999987 45689999998764
No 33
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.56 E-value=1.3e-08 Score=69.84 Aligned_cols=35 Identities=40% Similarity=1.108 Sum_probs=21.8
Q ss_pred eeecccCccC----ceecccCCcchHHhhccccc----ccCCCc
Q 039128 198 CTACKQLLIH----PVVLNCGHVYCETCIITPTV----QQLKCE 233 (404)
Q Consensus 198 C~iC~~~~~~----p~~l~CgH~fC~~Cl~~~~~----~~~~CP 233 (404)
||||++ +.+ |++|+|||+||+.||.++.. ..+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 888 99999999999999999753 456676
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.56 E-value=2.1e-08 Score=94.02 Aligned_cols=67 Identities=21% Similarity=0.329 Sum_probs=56.3
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHHHhH
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEEQFS 259 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~~ 259 (404)
..-+.|-||.++|.-|+.++|||+||.-||.+++....-||+||........+-+..+.++++.+-.
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 4557899999999999999999999999999999999999999998755445666677777766543
No 35
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.53 E-value=6.8e-08 Score=66.87 Aligned_cols=41 Identities=39% Similarity=0.973 Sum_probs=34.9
Q ss_pred ccccccccc---cCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCc
Q 039128 23 RCCICLDLL---YKPIVLSCGHISCFWCVHRSMNGLRESHCPICRR 65 (404)
Q Consensus 23 ~C~IC~~~l---~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~ 65 (404)
.|+||++.+ ..|++++|||+||..|+.... .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 489999988 358889999999999999877 35677999985
No 36
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=8.7e-08 Score=96.09 Aligned_cols=96 Identities=32% Similarity=0.719 Sum_probs=71.7
Q ss_pred CcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCCchhHHHH------HHHHHHch
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFPSICVMLH------RLLLKMYP 86 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~~~~~~l~------~~l~~~~~ 86 (404)
+....+..++.|.||...|..||+++|||+||.+||.+.+. ....||.||..+...+....... .++.++++
T Consensus 76 s~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld--~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~ 153 (398)
T KOG4159|consen 76 SGPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD--QETECPLCRDELVELPALEQALSLNRLLCKLITKFLE 153 (398)
T ss_pred ccCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc--cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 34566688999999999999999999999999999999877 66779999999987655544333 56666777
Q ss_pred HHHH---HHHHHHHHHHhhhcCCCCCC
Q 039128 87 IAYK---MREIEILEDERRYDFFSPQL 110 (404)
Q Consensus 87 ~~~~---~r~~~~~e~~~~~~~~~p~~ 110 (404)
..+. .......++........|.|
T Consensus 154 ~~~~~s~~~~~~~~~e~~~~e~~~p~f 180 (398)
T KOG4159|consen 154 GSSSFSPKASEKSKEEESSRECESPLF 180 (398)
T ss_pred hhhccchhhhhhhccccccccccCCcc
Confidence 6666 33333444555555666666
No 37
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.50 E-value=6e-08 Score=67.15 Aligned_cols=41 Identities=29% Similarity=0.874 Sum_probs=35.4
Q ss_pred eeeecccCc---cCceecccCCcchHHhhcccccccCCCccCCc
Q 039128 197 LCTACKQLL---IHPVVLNCGHVYCETCIITPTVQQLKCEVCQC 237 (404)
Q Consensus 197 ~C~iC~~~~---~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~ 237 (404)
.|+||.+.+ ..|.+++|||+||..|+.........||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 389999988 35678899999999999998877789999985
No 38
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.49 E-value=1e-07 Score=65.10 Aligned_cols=43 Identities=40% Similarity=1.082 Sum_probs=36.9
Q ss_pred ccccccccccCcEEcc-CCCcccHHHHHHhHcCCCCCCCCCCCcC
Q 039128 23 RCCICLDLLYKPIVLS-CGHISCFWCVHRSMNGLRESHCPICRRP 66 (404)
Q Consensus 23 ~C~IC~~~l~~Pv~l~-CGH~fC~~Ci~~~~~~~~~~~CP~CR~~ 66 (404)
.|+||++.+.+++.+. |||.||..|+..|+.. +...||+|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4899999998887766 9999999999998874 46679999875
No 39
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.49 E-value=5.1e-08 Score=91.42 Aligned_cols=47 Identities=28% Similarity=0.609 Sum_probs=40.4
Q ss_pred cceeeeecccCccCc--------eecccCCcchHHhhcccccccCCCccCCcccC
Q 039128 194 VDVLCTACKQLLIHP--------VVLNCGHVYCETCIITPTVQQLKCEVCQCLNP 240 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p--------~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 240 (404)
.+..|+||++.+.++ ++++|||.||..||.+|......||+||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 457899999987753 45689999999999999888889999999863
No 40
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.43 E-value=7.9e-08 Score=65.72 Aligned_cols=42 Identities=36% Similarity=0.819 Sum_probs=36.3
Q ss_pred eeeecccCccCceecc-cCCcchHHhhcccccc-cCCCccCCcc
Q 039128 197 LCTACKQLLIHPVVLN-CGHVYCETCIITPTVQ-QLKCEVCQCL 238 (404)
Q Consensus 197 ~C~iC~~~~~~p~~l~-CgH~fC~~Cl~~~~~~-~~~CP~Cr~~ 238 (404)
.|+||++.+.+++.++ |||.||..|+..+... ...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4899999998887665 9999999999998765 7789999875
No 41
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.3e-07 Score=90.79 Aligned_cols=64 Identities=25% Similarity=0.615 Sum_probs=52.4
Q ss_pred ccccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHH
Q 039128 191 ISIVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEE 256 (404)
Q Consensus 191 ~~~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~ 256 (404)
...+.+.|+||+++|.+|++++|||+||..|+..+......||.||. ... ....|..+.++++.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~ 72 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PSR-NLRPNVLLANLVER 72 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-chh-ccCccHHHHHHHHH
Confidence 34678899999999999999999999999999997667789999996 333 34477777777744
No 42
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.41 E-value=2.2e-07 Score=61.25 Aligned_cols=39 Identities=44% Similarity=1.072 Sum_probs=34.6
Q ss_pred cccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCC
Q 039128 24 CCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPIC 63 (404)
Q Consensus 24 C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~C 63 (404)
|+||++....++.++|||.||..|+..|+. .+...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 789999989999999999999999999887 345679987
No 43
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3.5e-08 Score=93.40 Aligned_cols=48 Identities=29% Similarity=0.713 Sum_probs=41.2
Q ss_pred CcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 21 SFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 21 ~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
.-.|+||+....-||.+.|+|.||..||...... +...|++||.++..
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhc-CCCCCceecCCCCc
Confidence 4569999999999999999999999999876552 55669999999875
No 44
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.4e-07 Score=90.72 Aligned_cols=51 Identities=37% Similarity=0.850 Sum_probs=45.5
Q ss_pred CcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCc
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRR 65 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~ 65 (404)
.....+.+.+.|+||+++|.+|++++|||+||..|+..++. ....||.||.
T Consensus 5 ~~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 5 ALLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred hhhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcC--CCcCCcccCC
Confidence 44566788999999999999999999999999999999888 6678999994
No 45
>PHA02926 zinc finger-like protein; Provisional
Probab=98.36 E-value=2.5e-07 Score=84.39 Aligned_cols=53 Identities=30% Similarity=0.794 Sum_probs=41.8
Q ss_pred ccCCCcccccccccccC---------cEEccCCCcccHHHHHHhHcCC----CCCCCCCCCcCCCC
Q 039128 17 KISHSFRCCICLDLLYK---------PIVLSCGHISCFWCVHRSMNGL----RESHCPICRRPYNH 69 (404)
Q Consensus 17 ~l~~~l~C~IC~~~l~~---------Pv~l~CGH~fC~~Ci~~~~~~~----~~~~CP~CR~~~~~ 69 (404)
...++..|+||++...+ ++..+|+|+||..||..|.... ....||+||..+..
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 34568999999998643 4667899999999999998742 23569999998763
No 46
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.35 E-value=2.1e-07 Score=89.47 Aligned_cols=79 Identities=20% Similarity=0.425 Sum_probs=62.2
Q ss_pred ccceeeeecccCccCceec-ccCCcchHHhhcccccccCCCccCCcccCCC----CCcchHHHHHHHHHHhHH----HHH
Q 039128 193 IVDVLCTACKQLLIHPVVL-NCGHVYCETCIITPTVQQLKCEVCQCLNPNG----FPKVCLELDQFLEEQFSK----EYA 263 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~----~~~~~~~l~~~l~~~~~~----~~~ 263 (404)
...++|.+|..+|.|+.++ -|.|+||+.||..++.....||.|...+... ....+..|+.++.+++|. |.+
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~erE~k 92 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQEREMK 92 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchHHHHHHH
Confidence 3567899999999999877 4999999999999988899999999877443 336668889999998883 444
Q ss_pred HHHHHHhc
Q 039128 264 LRRDVILN 271 (404)
Q Consensus 264 ~r~~~~~~ 271 (404)
.++.....
T Consensus 93 ~~rdFy~~ 100 (331)
T KOG2660|consen 93 RRRDFYKS 100 (331)
T ss_pred HHHHHHHh
Confidence 44444433
No 47
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.5e-07 Score=93.59 Aligned_cols=49 Identities=35% Similarity=0.717 Sum_probs=43.6
Q ss_pred CcccccccccccCcEEccCCCcccHHHHHHhHcCC---CCCCCCCCCcCCCC
Q 039128 21 SFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGL---RESHCPICRRPYNH 69 (404)
Q Consensus 21 ~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~---~~~~CP~CR~~~~~ 69 (404)
...||||++...-|+.+.|||.||..||..+|... +...||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999999999999999999999999999854 44679999998874
No 48
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.31 E-value=2.5e-07 Score=60.95 Aligned_cols=38 Identities=39% Similarity=0.956 Sum_probs=34.1
Q ss_pred eeecccCccCceecccCCcchHHhhccccc-ccCCCccC
Q 039128 198 CTACKQLLIHPVVLNCGHVYCETCIITPTV-QQLKCEVC 235 (404)
Q Consensus 198 C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~-~~~~CP~C 235 (404)
|+||++...+++.++|||.||..|+..+.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999999999999999999999999866 56679987
No 49
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.23 E-value=1.9e-06 Score=82.96 Aligned_cols=87 Identities=15% Similarity=0.306 Sum_probs=66.3
Q ss_pred cccccCCCcccccccccccCcEEcc-CCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCCc-----hhHHHHHHHHHHchH
Q 039128 14 EPEKISHSFRCCICLDLLYKPIVLS-CGHISCFWCVHRSMNGLRESHCPICRRPYNHFPS-----ICVMLHRLLLKMYPI 87 (404)
Q Consensus 14 ~~~~l~~~l~C~IC~~~l~~Pv~l~-CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~~-----~~~~l~~~l~~~~~~ 87 (404)
-..++...+.|.+|..+|.++.++. |-|+||+.||..++.. ...||.|...+.+... .+..++.++.+++|.
T Consensus 8 k~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPg 85 (331)
T KOG2660|consen 8 KLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPG 85 (331)
T ss_pred hhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceeccCccccccCCcchHHHHHHHHHcch
Confidence 3567889999999999999998865 9999999999999984 6789999998876442 235677888888887
Q ss_pred HHHHHHHHHHHHHhh
Q 039128 88 AYKMREIEILEDERR 102 (404)
Q Consensus 88 ~~~~r~~~~~e~~~~ 102 (404)
.+++..+....--+.
T Consensus 86 l~erE~k~~rdFy~~ 100 (331)
T KOG2660|consen 86 LQEREMKRRRDFYKS 100 (331)
T ss_pred HHHHHHHHHHHHHHh
Confidence 654444443333333
No 50
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=5.2e-07 Score=84.21 Aligned_cols=50 Identities=28% Similarity=0.732 Sum_probs=42.4
Q ss_pred CCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
.+..|.||++....|+.++|||+||..||...|.....-.||+||+....
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 36889999999999999999999999999995554445559999997763
No 51
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7e-07 Score=83.36 Aligned_cols=47 Identities=26% Similarity=0.694 Sum_probs=41.5
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcc-cccccCC-CccCCccc
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIIT-PTVQQLK-CEVCQCLN 239 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~-~~~~~~~-CP~Cr~~~ 239 (404)
..++.|+||++....|..++|||.||..||.. |...... ||+||+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 46889999999999999999999999999999 7555554 99999975
No 52
>PHA02926 zinc finger-like protein; Provisional
Probab=98.16 E-value=6.4e-07 Score=81.75 Aligned_cols=48 Identities=21% Similarity=0.533 Sum_probs=37.9
Q ss_pred ccceeeeecccCccC---------ceecccCCcchHHhhcccccc------cCCCccCCcccC
Q 039128 193 IVDVLCTACKQLLIH---------PVVLNCGHVYCETCIITPTVQ------QLKCEVCQCLNP 240 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~---------p~~l~CgH~fC~~Cl~~~~~~------~~~CP~Cr~~~~ 240 (404)
..+..|+||++...+ ++..+|+|+||..||..|... ...||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 456789999998754 245689999999999999542 356999999763
No 53
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=98.15 E-value=5.6e-06 Score=81.85 Aligned_cols=36 Identities=25% Similarity=0.715 Sum_probs=32.2
Q ss_pred cCCCcccccccccccCcEEccCCCcccHHHHHHhHc
Q 039128 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMN 53 (404)
Q Consensus 18 l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~ 53 (404)
+++++.|+||...|.+||.++|||..|+.|....+.
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 367899999999999999999999999999876544
No 54
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=6e-07 Score=86.83 Aligned_cols=72 Identities=31% Similarity=0.606 Sum_probs=55.6
Q ss_pred ccccCCCcccccccccccCcEEcc-CCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCCc--hhHHHHHHHHHHchH
Q 039128 15 PEKISHSFRCCICLDLLYKPIVLS-CGHISCFWCVHRSMNGLRESHCPICRRPYNHFPS--ICVMLHRLLLKMYPI 87 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l~-CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~~--~~~~l~~~l~~~~~~ 87 (404)
+..+..++.|+||++++...+++. |+|.||+.||...+.. +...||.||+.+..... .......++.++++.
T Consensus 37 l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 37 LAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKLVSKRSLRIDPNFDALISKIYPS 111 (381)
T ss_pred HHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhccccccCCCCccHHHHHHHHhcc
Confidence 466778999999999999988886 9999999999998885 55679999998863222 223345566666664
No 55
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.10 E-value=2.5e-06 Score=65.73 Aligned_cols=41 Identities=41% Similarity=0.989 Sum_probs=31.9
Q ss_pred cccccccccccC------------cEE-ccCCCcccHHHHHHhHcCCCCCCCCCCC
Q 039128 22 FRCCICLDLLYK------------PIV-LSCGHISCFWCVHRSMNGLRESHCPICR 64 (404)
Q Consensus 22 l~C~IC~~~l~~------------Pv~-l~CGH~fC~~Ci~~~~~~~~~~~CP~CR 64 (404)
..|.||++.|.+ ++. ..|||.|+..||.+|+. ....||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~--~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK--QNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT--TSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh--cCCcCCCCC
Confidence 349999999933 333 47999999999999998 445899997
No 56
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=5.3e-07 Score=87.17 Aligned_cols=69 Identities=19% Similarity=0.467 Sum_probs=53.7
Q ss_pred ccccceeeeecccCccCceecc-cCCcchHHhhcccc-cccCCCccCCccc-CCCCCcchHHHHHHHHHHhH
Q 039128 191 ISIVDVLCTACKQLLIHPVVLN-CGHVYCETCIITPT-VQQLKCEVCQCLN-PNGFPKVCLELDQFLEEQFS 259 (404)
Q Consensus 191 ~~~~~~~C~iC~~~~~~p~~l~-CgH~fC~~Cl~~~~-~~~~~CP~Cr~~~-~~~~~~~~~~l~~~l~~~~~ 259 (404)
....++.|+||+++++..++++ |+|.||..||...+ .....||.||+.+ ....++....++.+|.++|+
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~ 110 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP 110 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence 3457889999999999988774 99999999998864 5778999999986 33445566666667666555
No 57
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.5e-06 Score=85.73 Aligned_cols=71 Identities=21% Similarity=0.422 Sum_probs=58.7
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCCC-----CCcchHHHHHHHHHHhHHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNG-----FPKVCLELDQFLEEQFSKEYA 263 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~-----~~~~~~~l~~~l~~~~~~~~~ 263 (404)
..++.|.||..+|.+|+++||||+||..||.+.+.....||.||..+... ....|..+..++..|++..+.
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~~~ 157 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGSSS 157 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 57899999999999999999999999999999888889999999987541 111255566788888887776
No 58
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.98 E-value=3.5e-06 Score=75.28 Aligned_cols=60 Identities=27% Similarity=0.569 Sum_probs=49.6
Q ss_pred CcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCCchhHHHHHHHH
Q 039128 21 SFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFPSICVMLHRLLL 82 (404)
Q Consensus 21 ~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~~~~~~l~~~l~ 82 (404)
.|.|.||.+.+..||++.|||.||..|...-+. ....|-+|.+.....-.+...++.+|.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~--kg~~C~~Cgk~t~G~f~V~~d~~kmL~ 255 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ--KGDECGVCGKATYGRFWVVSDLQKMLN 255 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhc--cCCcceecchhhccceeHHhhHHHHHh
Confidence 489999999999999999999999999988777 566799999988766555555555553
No 59
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=7.6e-06 Score=79.14 Aligned_cols=48 Identities=29% Similarity=0.566 Sum_probs=36.1
Q ss_pred ceeeeecccC-ccCce----ecccCCcchHHhhcccc-cccCCCccCCcccCCC
Q 039128 195 DVLCTACKQL-LIHPV----VLNCGHVYCETCIITPT-VQQLKCEVCQCLNPNG 242 (404)
Q Consensus 195 ~~~C~iC~~~-~~~p~----~l~CgH~fC~~Cl~~~~-~~~~~CP~Cr~~~~~~ 242 (404)
+..||+|+.. +.+|- +.+|||+||..|+...+ .....||.|+..+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 4679999983 33442 22699999999999964 5567899999987543
No 60
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.94 E-value=3.8e-06 Score=64.71 Aligned_cols=40 Identities=33% Similarity=0.713 Sum_probs=33.1
Q ss_pred eeeecccCccCc-------------eecccCCcchHHhhcccccccCCCccCC
Q 039128 197 LCTACKQLLIHP-------------VVLNCGHVYCETCIITPTVQQLKCEVCQ 236 (404)
Q Consensus 197 ~C~iC~~~~~~p-------------~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr 236 (404)
.|.||++.|.++ +..+|||.|...||.+|+.....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 499999999433 2347999999999999998888999997
No 61
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=4.1e-06 Score=84.91 Aligned_cols=47 Identities=30% Similarity=0.712 Sum_probs=40.9
Q ss_pred ceeeeecccCccCceecccCCcchHHhhcccc-----cccCCCccCCcccCC
Q 039128 195 DVLCTACKQLLIHPVVLNCGHVYCETCIITPT-----VQQLKCEVCQCLNPN 241 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~-----~~~~~CP~Cr~~~~~ 241 (404)
+..||||++...-|+.+.|||.||..||..++ .....||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999999999999999999999999974 345689999987633
No 62
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.90 E-value=5.2e-06 Score=74.20 Aligned_cols=60 Identities=32% Similarity=0.612 Sum_probs=50.9
Q ss_pred ceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHH
Q 039128 195 DVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLE 255 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~ 255 (404)
.+.|.||.+.+..||++.|||.||..|..+-......|-+|.+..... +.|...|+.++.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~-f~V~~d~~kmL~ 255 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGR-FWVVSDLQKMLN 255 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhccc-eeHHhhHHHHHh
Confidence 478999999999999999999999999999888888999999986443 456667777763
No 63
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.80 E-value=3.6e-05 Score=74.53 Aligned_cols=48 Identities=29% Similarity=0.595 Sum_probs=37.3
Q ss_pred Cccccccccc-ccCcE----EccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 21 SFRCCICLDL-LYKPI----VLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 21 ~l~C~IC~~~-l~~Pv----~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
+..||+|+.. +..|- +.+|||.||..||...|.. +...||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 4689999984 33442 2269999999999998864 55689999998874
No 64
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.7e-05 Score=75.23 Aligned_cols=53 Identities=26% Similarity=0.753 Sum_probs=44.4
Q ss_pred CcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCCchhH
Q 039128 21 SFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFPSICV 75 (404)
Q Consensus 21 ~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~~~~~ 75 (404)
.+.|-||.++|+.||++.|||+||..|....+. ....|.+|.+.+...-.+..
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q--k~~~c~vC~~~t~g~~~~ak 293 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ--KGEKCYVCSQQTHGSFNVAK 293 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccc--cCCcceecccccccccchHH
Confidence 367999999999999999999999999988776 55679999998876544433
No 65
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.67 E-value=2.2e-05 Score=57.34 Aligned_cols=44 Identities=23% Similarity=0.457 Sum_probs=31.9
Q ss_pred CCCcccccccccccCcEEc-cCCCcccHHHHHHhHcCCCCCCCCC
Q 039128 19 SHSFRCCICLDLLYKPIVL-SCGHISCFWCVHRSMNGLRESHCPI 62 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l-~CGH~fC~~Ci~~~~~~~~~~~CP~ 62 (404)
.-.+.|||.+..|.+||.. .|||+|.+..|.+++...+...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4469999999999999985 7999999999999996556778998
No 66
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=1.3e-05 Score=85.08 Aligned_cols=49 Identities=31% Similarity=0.679 Sum_probs=43.0
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccc-cccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPT-VQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~-~~~~~CP~Cr~~~~~ 241 (404)
.+-+.||+|..-.++.+.+.|||.||..|+.+.. .....||.|...|..
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4668999999999999999999999999999874 467789999999854
No 67
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=3.2e-05 Score=73.46 Aligned_cols=58 Identities=34% Similarity=0.702 Sum_probs=47.4
Q ss_pred eeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHH
Q 039128 196 VLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFL 254 (404)
Q Consensus 196 ~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l 254 (404)
+.|-||..+|.+||++.|||.||..|....+.....|++|.+.+... ..+...|..+|
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~-~~~akeL~~~L 299 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS-FNVAKELLVSL 299 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceecccccccc-cchHHHHHHHH
Confidence 45999999999999999999999999999988889999999987543 34444444443
No 68
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.60 E-value=6.1e-05 Score=59.05 Aligned_cols=50 Identities=26% Similarity=0.682 Sum_probs=37.8
Q ss_pred CCCccccccccccc-----------C-cEE-ccCCCcccHHHHHHhHcCC-CCCCCCCCCcCCC
Q 039128 19 SHSFRCCICLDLLY-----------K-PIV-LSCGHISCFWCVHRSMNGL-RESHCPICRRPYN 68 (404)
Q Consensus 19 ~~~l~C~IC~~~l~-----------~-Pv~-l~CGH~fC~~Ci~~~~~~~-~~~~CP~CR~~~~ 68 (404)
.++..|.||...|. + |++ -.|+|.|+..||.+|+..+ ....||+||++..
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 34667777777664 1 544 4699999999999999965 3467999999753
No 69
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=3.6e-05 Score=75.65 Aligned_cols=47 Identities=28% Similarity=0.641 Sum_probs=39.3
Q ss_pred cccccccccccC---cEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 22 FRCCICLDLLYK---PIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 22 l~C~IC~~~l~~---Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
..|.||++.|.+ =..|+|+|.|+..||..|+... ...||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 599999999964 3569999999999999999854 3459999997654
No 70
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=5.3e-05 Score=72.15 Aligned_cols=49 Identities=27% Similarity=0.495 Sum_probs=42.1
Q ss_pred ceeeeecccCccCceecccCCcchHHhhccccc-ccCCCccCCcccCCCC
Q 039128 195 DVLCTACKQLLIHPVVLNCGHVYCETCIITPTV-QQLKCEVCQCLNPNGF 243 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~~~ 243 (404)
.-.|+||+....-|+.|+|+|.||.-||+.... ....|++||.++...+
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 346999999999999999999999999999754 5556999999986643
No 71
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=2.7e-05 Score=82.61 Aligned_cols=55 Identities=24% Similarity=0.686 Sum_probs=47.0
Q ss_pred cccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 14 EPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 14 ~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
++..+..-+.||+|..-..+.|.+.|||.||..||...+.. +...||.|...+..
T Consensus 636 Elk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 636 ELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYET-RQRKCPKCNAAFGA 690 (698)
T ss_pred HHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHH-hcCCCCCCCCCCCc
Confidence 35667888999999988888899999999999999987763 66789999998763
No 72
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=6e-05 Score=73.48 Aligned_cols=47 Identities=30% Similarity=0.612 Sum_probs=41.2
Q ss_pred ccceeeeecccCccC-------------ceecccCCcchHHhhcccccccCCCccCCccc
Q 039128 193 IVDVLCTACKQLLIH-------------PVVLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~-------------p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
.++-.|.||++.+.. |..|||||.|...|++.|.+....||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 467789999998543 46899999999999999999999999999984
No 73
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=8e-05 Score=73.26 Aligned_cols=46 Identities=24% Similarity=0.399 Sum_probs=38.4
Q ss_pred eeeeecccCccCc---eecccCCcchHHhhccccccc-CCCccCCcccCC
Q 039128 196 VLCTACKQLLIHP---VVLNCGHVYCETCIITPTVQQ-LKCEVCQCLNPN 241 (404)
Q Consensus 196 ~~C~iC~~~~~~p---~~l~CgH~fC~~Cl~~~~~~~-~~CP~Cr~~~~~ 241 (404)
.+|.||++-|..- ..|||.|.|...||..|+... ..||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 5899999998754 468999999999999997655 459999997633
No 74
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=5.9e-05 Score=79.83 Aligned_cols=49 Identities=35% Similarity=0.664 Sum_probs=43.1
Q ss_pred cCCCcccccccccccC-----cEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 18 ISHSFRCCICLDLLYK-----PIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 18 l~~~l~C~IC~~~l~~-----Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
......|+||.+.+.. |..++|||.||..|+.+|++ ....||.||..+.
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e--r~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE--RQQTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHH--HhCcCCcchhhhh
Confidence 3457999999999988 89999999999999999999 4667999999554
No 75
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=3.9e-05 Score=54.36 Aligned_cols=46 Identities=33% Similarity=0.853 Sum_probs=40.0
Q ss_pred cccccccccccCcEEccCCCc-ccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 22 FRCCICLDLLYKPIVLSCGHI-SCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 22 l~C~IC~~~l~~Pv~l~CGH~-fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
..|.||.+--.+.|...|||. .|..|-.+.++. ....||+||+++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHH
Confidence 679999999999999999997 899999998875 5667999999764
No 76
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=9.6e-05 Score=70.34 Aligned_cols=46 Identities=30% Similarity=0.591 Sum_probs=39.6
Q ss_pred ceeeeecccCccCc---eecccCCcchHHhhccccc-ccCCCccCCcccC
Q 039128 195 DVLCTACKQLLIHP---VVLNCGHVYCETCIITPTV-QQLKCEVCQCLNP 240 (404)
Q Consensus 195 ~~~C~iC~~~~~~p---~~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~ 240 (404)
...|.||+.-|+.- ++|||.|.|...|+..|+. ....||+||.+++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 46899999988643 5789999999999999965 7889999999875
No 77
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=6.7e-05 Score=79.40 Aligned_cols=47 Identities=30% Similarity=0.710 Sum_probs=43.1
Q ss_pred ccceeeeecccCccC-----ceecccCCcchHHhhcccccccCCCccCCccc
Q 039128 193 IVDVLCTACKQLLIH-----PVVLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~-----p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
..+..|+||.+.+.. |..++|||.|+..|+.+|++....||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 457789999999998 89999999999999999999999999999944
No 78
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00015 Score=70.70 Aligned_cols=53 Identities=38% Similarity=0.867 Sum_probs=42.1
Q ss_pred ccccc-CCCccccccccc-ccC------------cEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 14 EPEKI-SHSFRCCICLDL-LYK------------PIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 14 ~~~~l-~~~l~C~IC~~~-l~~------------Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
..+++ +.+-.|.||.+- ++. |..++|||.++..|+..|+. +.-.||+||.++.
T Consensus 279 t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E--RqQTCPICr~p~i 345 (491)
T COG5243 279 TEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE--RQQTCPICRRPVI 345 (491)
T ss_pred hhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH--hccCCCcccCccc
Confidence 34444 567899999987 433 47899999999999999999 4456999999853
No 79
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.28 E-value=0.00021 Score=67.82 Aligned_cols=43 Identities=33% Similarity=0.827 Sum_probs=38.0
Q ss_pred cccccccccccCcEEcc-CCCcccHHHHHHhHcCCCCCCCCCCCc
Q 039128 22 FRCCICLDLLYKPIVLS-CGHISCFWCVHRSMNGLRESHCPICRR 65 (404)
Q Consensus 22 l~C~IC~~~l~~Pv~l~-CGH~fC~~Ci~~~~~~~~~~~CP~CR~ 65 (404)
|.|++|..++++|+.++ |||+||.+||...+.. --+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d-sDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD-SDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhh-ccccCCCccc
Confidence 99999999999999996 8999999999987774 3467999955
No 80
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00028 Score=66.49 Aligned_cols=54 Identities=26% Similarity=0.612 Sum_probs=45.5
Q ss_pred ccccCCCcccccccccccCcEEcc-CCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 15 PEKISHSFRCCICLDLLYKPIVLS-CGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l~-CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
...-.....|++|.+.-..|.+.. |||.||..||.........+.||.|..+..
T Consensus 233 ss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 344456789999999999998876 999999999998887667789999988765
No 81
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00021 Score=68.09 Aligned_cols=47 Identities=32% Similarity=0.719 Sum_probs=39.7
Q ss_pred CcccccccccccC---cEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 21 SFRCCICLDLLYK---PIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 21 ~l~C~IC~~~l~~---Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
-..|.||++-|.+ -+++||.|.|+..|+..|+.. ....||+||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~-y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG-YSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhh-hcccCCccCCCCC
Confidence 4789999998853 567999999999999999984 4567999999875
No 82
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00022 Score=67.10 Aligned_cols=47 Identities=32% Similarity=0.706 Sum_probs=40.7
Q ss_pred ccceeeeecccCccCceec-ccCCcchHHhhccc--ccccCCCccCCccc
Q 039128 193 IVDVLCTACKQLLIHPVVL-NCGHVYCETCIITP--TVQQLKCEVCQCLN 239 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l-~CgH~fC~~Cl~~~--~~~~~~CP~Cr~~~ 239 (404)
..+.+|++|.+..+.|.+. +|||.||..|+... ....+.||.|....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 5678999999999999877 49999999999986 35678999999875
No 83
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.15 E-value=0.00014 Score=53.18 Aligned_cols=42 Identities=24% Similarity=0.492 Sum_probs=30.0
Q ss_pred ccceeeeecccCccCceec-ccCCcchHHhhcccc--cccCCCcc
Q 039128 193 IVDVLCTACKQLLIHPVVL-NCGHVYCETCIITPT--VQQLKCEV 234 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l-~CgH~fC~~Cl~~~~--~~~~~CP~ 234 (404)
.-.+.|||.+..|.+||.. .|||+|.+..|..++ .....||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3457899999999999875 899999999999997 46678998
No 84
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00018 Score=51.08 Aligned_cols=44 Identities=25% Similarity=0.603 Sum_probs=37.9
Q ss_pred eeeeecccCccCceecccCCc-chHHhhccccc-ccCCCccCCccc
Q 039128 196 VLCTACKQLLIHPVVLNCGHV-YCETCIITPTV-QQLKCEVCQCLN 239 (404)
Q Consensus 196 ~~C~iC~~~~~~p~~l~CgH~-fC~~Cl~~~~~-~~~~CP~Cr~~~ 239 (404)
..|.||++...+.|...|||. +|..|-.+... ....||+||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 579999999999999999997 78999887644 667899999875
No 85
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.93 E-value=0.00021 Score=75.58 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=37.1
Q ss_pred CcccccccccccCcEE---ccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCC
Q 039128 21 SFRCCICLDLLYKPIV---LSCGHISCFWCVHRSMNGLRESHCPICRRPYNHF 70 (404)
Q Consensus 21 ~l~C~IC~~~l~~Pv~---l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~ 70 (404)
.-.|++|+..+.+... ..|+|.||..||..|-+ ....||+||..+...
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR--~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR--CAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh--hcccCchhhhhhhee
Confidence 4578888877655332 36999999999999877 556799999988754
No 86
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.93 E-value=0.00047 Score=70.01 Aligned_cols=55 Identities=27% Similarity=0.753 Sum_probs=47.3
Q ss_pred CCcccccCCCcccccccccccCcEEc-cCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 12 NAEPEKISHSFRCCICLDLLYKPIVL-SCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 12 ~~~~~~l~~~l~C~IC~~~l~~Pv~l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
......+++.+.|++|..++.+|+.. .|||.||..|+..|+.. ...||.|+....
T Consensus 12 ~~~~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 12 KHLGRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELT 67 (391)
T ss_pred cccCCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccc
Confidence 34455578889999999999999994 89999999999999884 678999988765
No 87
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.89 E-value=0.00099 Score=63.37 Aligned_cols=42 Identities=36% Similarity=0.868 Sum_probs=37.8
Q ss_pred eeeeecccCccCceecc-cCCcchHHhhccc-ccccCCCccCCc
Q 039128 196 VLCTACKQLLIHPVVLN-CGHVYCETCIITP-TVQQLKCEVCQC 237 (404)
Q Consensus 196 ~~C~iC~~~~~~p~~l~-CgH~fC~~Cl~~~-~~~~~~CP~Cr~ 237 (404)
+.|+.|..++.+|+.++ |||.||..||... +...+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 88999999999999885 8999999999986 567889999965
No 88
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0007 Score=66.25 Aligned_cols=48 Identities=25% Similarity=0.489 Sum_probs=42.3
Q ss_pred ccceeeeecccCccCceecccCCc-chHHhhcccccccCCCccCCcccC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHV-YCETCIITPTVQQLKCEVCQCLNP 240 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~ 240 (404)
+....|.||+.-.+|-++|||.|. .|..|.+...-....||+||+++.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 456789999999999999999998 899999987666778999999863
No 89
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.75 E-value=0.0011 Score=67.44 Aligned_cols=48 Identities=31% Similarity=0.758 Sum_probs=43.2
Q ss_pred cccceeeeecccCccCcee-cccCCcchHHhhcccccccCCCccCCccc
Q 039128 192 SIVDVLCTACKQLLIHPVV-LNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~-l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
...++.|++|...+.+|+. +.|||.||..|+..+......||.|+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~ 66 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQEL 66 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCccccccc
Confidence 4677899999999999998 59999999999999987788999998865
No 90
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.74 E-value=0.00084 Score=52.71 Aligned_cols=45 Identities=24% Similarity=0.593 Sum_probs=33.1
Q ss_pred ceeeeecccCcc-----------C-ceec-ccCCcchHHhhccccc---ccCCCccCCccc
Q 039128 195 DVLCTACKQLLI-----------H-PVVL-NCGHVYCETCIITPTV---QQLKCEVCQCLN 239 (404)
Q Consensus 195 ~~~C~iC~~~~~-----------~-p~~l-~CgH~fC~~Cl~~~~~---~~~~CP~Cr~~~ 239 (404)
+-.|.||...|. + |+++ .|+|.|...||.+|++ ....||.||+..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 445666666654 2 4433 6999999999999964 357899999875
No 91
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0026 Score=62.40 Aligned_cols=49 Identities=33% Similarity=0.782 Sum_probs=41.5
Q ss_pred CCCcccccccccccCcEEccCCCc-ccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 19 SHSFRCCICLDLLYKPIVLSCGHI-SCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~CGH~-fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
...-.|-||+.-.++-++|||.|. .|..|.....- .+..||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~--q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY--QTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHH--hhcCCCccccchHh
Confidence 345889999999999999999998 79999987653 45679999998764
No 92
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.28 E-value=0.0039 Score=44.08 Aligned_cols=42 Identities=31% Similarity=0.600 Sum_probs=34.4
Q ss_pred ccccccc--cccCcEEccCC-----CcccHHHHHHhHcCCCCCCCCCCC
Q 039128 23 RCCICLD--LLYKPIVLSCG-----HISCFWCVHRSMNGLRESHCPICR 64 (404)
Q Consensus 23 ~C~IC~~--~l~~Pv~l~CG-----H~fC~~Ci~~~~~~~~~~~CP~CR 64 (404)
.|.||++ .-.+|...||. |.++..|+.+|+...+...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 34568888884 889999999999877777899994
No 93
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.24 E-value=0.0022 Score=64.41 Aligned_cols=50 Identities=24% Similarity=0.589 Sum_probs=40.6
Q ss_pred ccccCCCcccccccccccCcE----EccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 15 PEKISHSFRCCICLDLLYKPI----VLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv----~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
...+-+.-+||||++.+..-+ ++.|-|+|...|+..|+. .+||+||.-..
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~q~ 222 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD----SSCPVCRYCQS 222 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc----CcChhhhhhcC
Confidence 344567789999999998654 467999999999999876 46999998655
No 94
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.24 E-value=0.0032 Score=64.26 Aligned_cols=53 Identities=23% Similarity=0.529 Sum_probs=43.8
Q ss_pred cccCCCcccccccccccCcEEccCCCcccHHHHHHhHcC---CCCCCCCCCCcCCC
Q 039128 16 EKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNG---LRESHCPICRRPYN 68 (404)
Q Consensus 16 ~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~---~~~~~CP~CR~~~~ 68 (404)
.+-.....|.+|.+...+++...|.|.||+-||.++... .....||+|...++
T Consensus 531 ~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 334567899999999999999999999999999776653 23467999988875
No 95
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.21 E-value=0.0043 Score=44.48 Aligned_cols=47 Identities=23% Similarity=0.491 Sum_probs=38.0
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
.....|-.|...-+..++++|||..|..|... +.-.-||.|..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEF 51 (55)
T ss_pred ccceeEEEccccccccccccccceeeccccCh--hhccCCCCCCCcccC
Confidence 34567888988888899999999999999864 344569999998744
No 96
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0022 Score=63.55 Aligned_cols=47 Identities=23% Similarity=0.566 Sum_probs=39.0
Q ss_pred ccceeeeecccCccCce-----e---cccCCcchHHhhcccc--cc-----cCCCccCCccc
Q 039128 193 IVDVLCTACKQLLIHPV-----V---LNCGHVYCETCIITPT--VQ-----QLKCEVCQCLN 239 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~-----~---l~CgH~fC~~Cl~~~~--~~-----~~~CP~Cr~~~ 239 (404)
..+..|.||++...+.. . .+|-|.||..|+..|. .. ...||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45778999999988776 3 5799999999999984 33 57899999865
No 97
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0079 Score=59.80 Aligned_cols=48 Identities=27% Similarity=0.660 Sum_probs=39.3
Q ss_pred CcccccccccccCc-----EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 21 SFRCCICLDLLYKP-----IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 21 ~l~C~IC~~~l~~P-----v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
..+||||++-+..| |.+.|||.|-..||.+|+.+.....||.|.....
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 46899999988665 4578999999999999997545567999977654
No 98
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.09 E-value=0.0014 Score=62.70 Aligned_cols=73 Identities=26% Similarity=0.519 Sum_probs=52.5
Q ss_pred eeeecccCcc----CceecccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHH-HhHHHHHHHHHHHhc
Q 039128 197 LCTACKQLLI----HPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEE-QFSKEYALRRDVILN 271 (404)
Q Consensus 197 ~C~iC~~~~~----~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~-~~~~~~~~r~~~~~~ 271 (404)
.||||.+.+. .|..++|||..-..|+.......+.||+|.+ +.+ ...+...++.+|.. -+|.+|..+...+..
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d-~~~~~~~~d~~l~~~~~p~~y~~~~~~i~c 237 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGD-MSHYFRKLDKELAGSPMPEEYKNKTQDILC 237 (276)
T ss_pred CCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHH-HHHHHHHHHHHHhcCCCCchhhchhheeec
Confidence 4999998775 4667899999999999998665599999988 433 33555666666654 456677666554433
No 99
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.88 E-value=0.0037 Score=62.33 Aligned_cols=33 Identities=24% Similarity=0.734 Sum_probs=30.7
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhccc
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITP 225 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~ 225 (404)
++++.|+||...|.+|++|+|||+.|+.|....
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNI 34 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhh
Confidence 578899999999999999999999999998765
No 100
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.82 E-value=0.0031 Score=64.32 Aligned_cols=48 Identities=23% Similarity=0.498 Sum_probs=41.5
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccc-----cccCCCccCCcccC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPT-----VQQLKCEVCQCLNP 240 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~-----~~~~~CP~Cr~~~~ 240 (404)
.++..|.+|.+.-.+++...|.|.||+.|+.++. .....||+|...+.
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 5678899999999999999999999999998862 34589999988764
No 101
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.78 E-value=0.00048 Score=72.94 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=40.0
Q ss_pred cceeeeecccCccCcee---cccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 194 VDVLCTACKQLLIHPVV---LNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~~---l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
..-.||+|+..+.+-.. .+|+|.||..||..|......||+||..|..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 34569999988877643 3799999999999998888899999998744
No 102
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.0054 Score=60.79 Aligned_cols=51 Identities=25% Similarity=0.698 Sum_probs=41.3
Q ss_pred CCCcccccccccccCcE-----E---ccCCCcccHHHHHHhHcCCC-----CCCCCCCCcCCCC
Q 039128 19 SHSFRCCICLDLLYKPI-----V---LSCGHISCFWCVHRSMNGLR-----ESHCPICRRPYNH 69 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv-----~---l~CGH~fC~~Ci~~~~~~~~-----~~~CP~CR~~~~~ 69 (404)
..+..|.||.+...+.+ . .+|-|.||..||..|..... ...||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 45789999999887765 3 56999999999999874333 5789999998764
No 103
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.72 E-value=0.002 Score=49.10 Aligned_cols=48 Identities=31% Similarity=0.690 Sum_probs=23.5
Q ss_pred Cccccccccccc-C---cEE----ccCCCcccHHHHHHhHcCC---C------CCCCCCCCcCCC
Q 039128 21 SFRCCICLDLLY-K---PIV----LSCGHISCFWCVHRSMNGL---R------ESHCPICRRPYN 68 (404)
Q Consensus 21 ~l~C~IC~~~l~-~---Pv~----l~CGH~fC~~Ci~~~~~~~---~------~~~CP~CR~~~~ 68 (404)
++.|.||+.++. . |+. -.|+..|+..|+.+|+... + ...||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 578999999764 2 433 2699999999999998732 1 124999998764
No 104
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.60 E-value=0.0058 Score=60.42 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=40.7
Q ss_pred CcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCC
Q 039128 21 SFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHF 70 (404)
Q Consensus 21 ~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~ 70 (404)
.-.|.||-+-=.+-..-+|||..|..|+..|......-.||.||..+...
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 35799999866665566799999999999988765567799999998754
No 105
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.37 E-value=0.0064 Score=60.13 Aligned_cols=45 Identities=24% Similarity=0.658 Sum_probs=38.7
Q ss_pred eeeecccCccCceecccCCcchHHhhcccc--cccCCCccCCcccCC
Q 039128 197 LCTACKQLLIHPVVLNCGHVYCETCIITPT--VQQLKCEVCQCLNPN 241 (404)
Q Consensus 197 ~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~--~~~~~CP~Cr~~~~~ 241 (404)
.|.||-+--++-.+-||||..|..|+..|. .....||.||..+..
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 499999988887777999999999999995 346889999998744
No 106
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.29 E-value=0.0075 Score=65.43 Aligned_cols=53 Identities=28% Similarity=0.581 Sum_probs=42.8
Q ss_pred cccCCCccccccccccc--C---cE-Ec-cCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 16 EKISHSFRCCICLDLLY--K---PI-VL-SCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 16 ~~l~~~l~C~IC~~~l~--~---Pv-~l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
..+.....|+||+.++. + |- +. .|.|-|+..|+.+|++..+...||+||..++
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 44566788999999885 1 32 22 4999999999999999888899999997654
No 107
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.25 E-value=0.0091 Score=42.81 Aligned_cols=46 Identities=33% Similarity=0.695 Sum_probs=36.0
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 19 SHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.....|-.|...-...++++|||..|..|..- .+-+.||+|..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~----~rYngCPfC~~~~~ 50 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFPG----ERYNGCPFCGTPFE 50 (55)
T ss_pred ccceeEEEccccccccccccccceeeccccCh----hhccCCCCCCCccc
Confidence 34566777877777889999999999999743 24567999988775
No 108
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.01 Score=57.94 Aligned_cols=48 Identities=23% Similarity=0.562 Sum_probs=41.9
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 19 SHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.++-.||||..--...|..||||.-|+.||.+++- +...|-.|+..+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm--N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM--NCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHh--cCCeeeEecceee
Confidence 46789999999888999999999999999999887 6677999977654
No 109
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.0094 Score=56.19 Aligned_cols=51 Identities=20% Similarity=0.449 Sum_probs=40.9
Q ss_pred cCCCcccccccccccCc----------EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 18 ISHSFRCCICLDLLYKP----------IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 18 l~~~l~C~IC~~~l~~P----------v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
-.++-.|.||..-+..- ..++|+|+|+..||..|-.-.++-.||.|+..+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 34577899999876533 3589999999999999987666678999988764
No 110
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.0072 Score=56.93 Aligned_cols=46 Identities=30% Similarity=0.577 Sum_probs=37.4
Q ss_pred cceeeeecccCccCce----------ecccCCcchHHhhccc--ccccCCCccCCccc
Q 039128 194 VDVLCTACKQLLIHPV----------VLNCGHVYCETCIITP--TVQQLKCEVCQCLN 239 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~----------~l~CgH~fC~~Cl~~~--~~~~~~CP~Cr~~~ 239 (404)
++-.|.||.+-+...+ .|.|+|+|...||..| ......||-|++.+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 3446999988776443 6799999999999998 46677899999876
No 111
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.87 E-value=0.015 Score=54.29 Aligned_cols=42 Identities=29% Similarity=0.789 Sum_probs=30.7
Q ss_pred eeeeecccCcc-Cce-ecccCCcchHHhhcccccccCCCccCCccc
Q 039128 196 VLCTACKQLLI-HPV-VLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 196 ~~C~iC~~~~~-~p~-~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
+.|..|...-. +|. .+.|+|+||..|....... .||+|++.+
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~--~C~lCkk~i 47 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPD--VCPLCKKSI 47 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCcc--cccccccee
Confidence 46777765443 333 4589999999999765433 799999986
No 112
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.86 E-value=0.011 Score=59.36 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=36.5
Q ss_pred ccceeeeecccCccCce----ecccCCcchHHhhcccccccCCCccCCccc
Q 039128 193 IVDVLCTACKQLLIHPV----VLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~----~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
.+--+||||++-+..-+ ++.|.|+|...|+..|.. .+||+||...
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q 221 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQ 221 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhc
Confidence 34458999999997664 557999999999999864 4699999854
No 113
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.011 Score=57.58 Aligned_cols=49 Identities=27% Similarity=0.493 Sum_probs=43.5
Q ss_pred ccccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCccc
Q 039128 191 ISIVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 191 ~~~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
...++..||||+---.+.|..||+|.-|..||.+++-+.+.|-.|+..+
T Consensus 418 p~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv 466 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTV 466 (489)
T ss_pred CCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEeccee
Confidence 3457788999999989999999999999999999988889999997765
No 114
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.012 Score=59.68 Aligned_cols=48 Identities=23% Similarity=0.564 Sum_probs=37.6
Q ss_pred ccceeeeecccCcc-----------------CceecccCCcchHHhhccccc-ccCCCccCCcccC
Q 039128 193 IVDVLCTACKQLLI-----------------HPVVLNCGHVYCETCIITPTV-QQLKCEVCQCLNP 240 (404)
Q Consensus 193 ~~~~~C~iC~~~~~-----------------~p~~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~ 240 (404)
+....|+||+.... +=+.+||.|.|...|+.+|.. ....||+||.+++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 34457999987552 123469999999999999987 5569999999875
No 115
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.67 E-value=0.029 Score=43.19 Aligned_cols=33 Identities=27% Similarity=0.659 Sum_probs=27.0
Q ss_pred cEEc-cCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 34 PIVL-SCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 34 Pv~l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
|++- .|.|.|...||.+|+. ....||++|+...
T Consensus 48 ~v~wG~CnHaFH~HCI~rWL~--Tk~~CPld~q~w~ 81 (88)
T COG5194 48 PVVWGVCNHAFHDHCIYRWLD--TKGVCPLDRQTWV 81 (88)
T ss_pred eEEEEecchHHHHHHHHHHHh--hCCCCCCCCceeE
Confidence 4443 4999999999999998 4667999998764
No 116
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.021 Score=56.16 Aligned_cols=50 Identities=28% Similarity=0.761 Sum_probs=38.4
Q ss_pred cccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 14 EPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 14 ~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
...++.....|.||++-.++.+.++|||+.| |..-+. ....||+||+.+.
T Consensus 298 ~~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~---~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 298 TFRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK---HLPQCPVCRQRIR 347 (355)
T ss_pred cccccCCCCceEEecCCccceeeecCCcEEE--chHHHh---hCCCCchhHHHHH
Confidence 3455566789999999999999999999977 665433 2345999998654
No 117
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.026 Score=57.41 Aligned_cols=50 Identities=26% Similarity=0.622 Sum_probs=38.5
Q ss_pred cCCCccccccccccc-----------------CcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 18 ISHSFRCCICLDLLY-----------------KPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 18 l~~~l~C~IC~~~l~-----------------~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.+...-|+||..... +-+++||.|+|...|+.+|+.. .+..||+||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~-ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT-YKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh-hcccCCccCCCCC
Confidence 456678999987542 1245699999999999999983 3457999999875
No 118
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.015 Score=44.36 Aligned_cols=46 Identities=28% Similarity=0.688 Sum_probs=34.2
Q ss_pred cccccccccc------------CcEEcc-CCCcccHHHHHHhHcCC-CCCCCCCCCcCCC
Q 039128 23 RCCICLDLLY------------KPIVLS-CGHISCFWCVHRSMNGL-RESHCPICRRPYN 68 (404)
Q Consensus 23 ~C~IC~~~l~------------~Pv~l~-CGH~fC~~Ci~~~~~~~-~~~~CP~CR~~~~ 68 (404)
.|-||.-.|. -|.++. |.|.|...||.+|+... ....||+||+...
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 6777765553 155554 99999999999999854 3456999998653
No 119
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.011 Score=56.31 Aligned_cols=44 Identities=36% Similarity=0.842 Sum_probs=35.8
Q ss_pred CCCcccccccccccCcEEccCCCc-ccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 19 SHSFRCCICLDLLYKPIVLSCGHI-SCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~CGH~-fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.....|.||.+..++-|+|+|||. -|..|-.+ ...||+||+.+.
T Consensus 298 ~~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr------m~eCPICRqyi~ 342 (350)
T KOG4275|consen 298 ATRRLCAICMDAPRDCVFLECGHMVTCTKCGKR------MNECPICRQYIV 342 (350)
T ss_pred hHHHHHHHHhcCCcceEEeecCcEEeehhhccc------cccCchHHHHHH
Confidence 337889999999999999999996 69999543 236999988543
No 120
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=93.93 E-value=0.032 Score=39.36 Aligned_cols=40 Identities=23% Similarity=0.568 Sum_probs=31.3
Q ss_pred eeeeccc--CccCceecccC-----CcchHHhhcccc--cccCCCccCC
Q 039128 197 LCTACKQ--LLIHPVVLNCG-----HVYCETCIITPT--VQQLKCEVCQ 236 (404)
Q Consensus 197 ~C~iC~~--~~~~p~~l~Cg-----H~fC~~Cl~~~~--~~~~~CP~Cr 236 (404)
.|.||++ .-.+|...||. |.+...|+.+|+ .....||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889987 44567888985 889999999996 4456899995
No 121
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.91 E-value=0.051 Score=38.09 Aligned_cols=43 Identities=33% Similarity=0.831 Sum_probs=21.4
Q ss_pred cccccccccC--cEE--ccCCCcccHHHHHHhHcCCCCCCCCCCCcCC
Q 039128 24 CCICLDLLYK--PIV--LSCGHISCFWCVHRSMNGLRESHCPICRRPY 67 (404)
Q Consensus 24 C~IC~~~l~~--Pv~--l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~ 67 (404)
||+|.+.+.. --+ .+||+-+|++|....+.. ....||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence 7888887732 112 469999999999987653 456799999876
No 122
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.83 E-value=0.06 Score=51.71 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=38.7
Q ss_pred ccceeeeecccCccCc---e-ecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHP---V-VLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p---~-~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
...+.|||....|..- + ..+|||+|+..+|.... ....||+|..++..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCcccc
Confidence 5678999999998542 2 33899999999999884 45679999999854
No 123
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.098 Score=52.36 Aligned_cols=47 Identities=28% Similarity=0.570 Sum_probs=34.7
Q ss_pred ccccceeeeecccCccCc---eecccCCcchHHhhcccc--------cccCCCccCCc
Q 039128 191 ISIVDVLCTACKQLLIHP---VVLNCGHVYCETCIITPT--------VQQLKCEVCQC 237 (404)
Q Consensus 191 ~~~~~~~C~iC~~~~~~p---~~l~CgH~fC~~Cl~~~~--------~~~~~CP~Cr~ 237 (404)
....-+.|.||.+..... +.+||+|+||+.|+..+. .....||.+.-
T Consensus 180 F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 180 FVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred HHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 344567899999987654 467999999999999972 23456776543
No 124
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.042 Score=54.41 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=36.5
Q ss_pred eeeeecccCccCc----eecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 196 VLCTACKQLLIHP----VVLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 196 ~~C~iC~~~~~~p----~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
-.|.||..-++.- -.+.|||.+...||..|+.....||.|+..++.
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 3588887766543 356799999999999998778889999987643
No 125
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.056 Score=52.70 Aligned_cols=44 Identities=27% Similarity=0.673 Sum_probs=35.9
Q ss_pred eeeeecccCcc------CceecccCCcchHHhhcccc-cccCCCccCCccc
Q 039128 196 VLCTACKQLLI------HPVVLNCGHVYCETCIITPT-VQQLKCEVCQCLN 239 (404)
Q Consensus 196 ~~C~iC~~~~~------~p~~l~CgH~fC~~Cl~~~~-~~~~~CP~Cr~~~ 239 (404)
+.|-||.+.|. .|..|.|||+||..|+.... .....||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 46888887765 47788999999999999975 4556789999985
No 126
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.17 Score=51.35 Aligned_cols=43 Identities=23% Similarity=0.500 Sum_probs=29.9
Q ss_pred ccceeeeecccCcc-----CceecccCCcchHHhhcccccccCCCccC
Q 039128 193 IVDVLCTACKQLLI-----HPVVLNCGHVYCETCIITPTVQQLKCEVC 235 (404)
Q Consensus 193 ~~~~~C~iC~~~~~-----~p~~l~CgH~fC~~Cl~~~~~~~~~CP~C 235 (404)
..-..||.|.-.+. +-++=.|||-||..|...|......|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 34557999987653 23444699999999998886666556444
No 127
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.33 E-value=0.04 Score=59.60 Aligned_cols=46 Identities=33% Similarity=0.795 Sum_probs=40.8
Q ss_pred cccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 22 FRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 22 l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
..|.+|.+ ...++.+.|||.||..|+...+.......||.||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 89999999 88899999999999999999888766668999988764
No 128
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.23 E-value=0.046 Score=38.28 Aligned_cols=42 Identities=21% Similarity=0.488 Sum_probs=20.5
Q ss_pred eeecccCccCc--eec--ccCCcchHHhhccccc-ccCCCccCCccc
Q 039128 198 CTACKQLLIHP--VVL--NCGHVYCETCIITPTV-QQLKCEVCQCLN 239 (404)
Q Consensus 198 C~iC~~~~~~p--~~l--~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~ 239 (404)
||+|.+.+... ... +||+-+|+.|...... ....||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 67777766321 223 5899999999988764 678999999874
No 129
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=0.072 Score=51.78 Aligned_cols=48 Identities=27% Similarity=0.618 Sum_probs=40.5
Q ss_pred CCCcccccccccccCcEEcc-CCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 19 SHSFRCCICLDLLYKPIVLS-CGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~-CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.+.-.||||+....+|.++. -|.+||..||..++. +...||+-..+..
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPAS 346 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHH--hcCCCCccCCcch
Confidence 35578999999999998776 699999999999998 6678998866554
No 130
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.085 Score=50.48 Aligned_cols=50 Identities=26% Similarity=0.644 Sum_probs=35.8
Q ss_pred eeeeccc-CccCce----ecccCCcchHHhhcccc-cccCCCccCCcccCCCCCcc
Q 039128 197 LCTACKQ-LLIHPV----VLNCGHVYCETCIITPT-VQQLKCEVCQCLNPNGFPKV 246 (404)
Q Consensus 197 ~C~iC~~-~~~~p~----~l~CgH~fC~~Cl~~~~-~~~~~CP~Cr~~~~~~~~~~ 246 (404)
.||+|.. .+.+|- +-+|||..|.+|+.+.+ .+...||.|...+-....++
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~ 57 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRV 57 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccch
Confidence 4888875 445552 22799999999999974 56778999988764433333
No 131
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.043 Score=54.00 Aligned_cols=42 Identities=31% Similarity=0.705 Sum_probs=33.2
Q ss_pred ceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCccc
Q 039128 195 DVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
...|.||.+-..+.+.+||||.-| |..-. .+...||+||+.+
T Consensus 305 p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRI 346 (355)
T ss_pred CCceEEecCCccceeeecCCcEEE--chHHH-hhCCCCchhHHHH
Confidence 346999999999999999999977 65433 3445599999865
No 132
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.99 E-value=0.1 Score=51.02 Aligned_cols=48 Identities=29% Similarity=0.707 Sum_probs=39.0
Q ss_pred ccCCCcccccccccccCcEE-ccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 17 KISHSFRCCICLDLLYKPIV-LSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 17 ~l~~~l~C~IC~~~l~~Pv~-l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
.+-+.+.||||.+.+..|+. .+=||+-|..|-.+ ....||.||.++..
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~-----~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK-----VSNKCPTCRLPIGN 92 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhh-----hcccCCcccccccc
Confidence 34567999999999999975 45699999999764 45579999998874
No 133
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=92.99 E-value=0.022 Score=43.38 Aligned_cols=45 Identities=20% Similarity=0.510 Sum_probs=21.2
Q ss_pred ceeeeecccCcc-C---ceec----ccCCcchHHhhccccc---c--------cCCCccCCccc
Q 039128 195 DVLCTACKQLLI-H---PVVL----NCGHVYCETCIITPTV---Q--------QLKCEVCQCLN 239 (404)
Q Consensus 195 ~~~C~iC~~~~~-~---p~~l----~CgH~fC~~Cl~~~~~---~--------~~~CP~Cr~~~ 239 (404)
+..|.||+.++. + |.++ .|+..|...||.+|+. . ...||.|++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 457999998765 2 3222 6999999999999842 1 13599999876
No 134
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.022 Score=54.39 Aligned_cols=41 Identities=29% Similarity=0.663 Sum_probs=34.7
Q ss_pred ceeeeecccCccCceecccCCc-chHHhhcccccccCCCccCCccc
Q 039128 195 DVLCTACKQLLIHPVVLNCGHV-YCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
+..|.||++...+-+.|+|||. -|..|-.+. ..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHH
Confidence 6789999999999999999996 588886543 4799999865
No 135
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.098 Score=52.18 Aligned_cols=49 Identities=22% Similarity=0.463 Sum_probs=38.4
Q ss_pred cCCCccccccccccc---CcEEccCCCcccHHHHHHhHcCCCC--CCCCCCCcCC
Q 039128 18 ISHSFRCCICLDLLY---KPIVLSCGHISCFWCVHRSMNGLRE--SHCPICRRPY 67 (404)
Q Consensus 18 l~~~l~C~IC~~~l~---~Pv~l~CGH~fC~~Ci~~~~~~~~~--~~CP~CR~~~ 67 (404)
+...|.|||=.+--. .|+.+.|||+.++.-+.+..+. +. +.||.|-...
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~n-g~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKN-GSQSFKCPYCPVEQ 384 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhC-CCeeeeCCCCCccc
Confidence 456789998666543 4999999999999999986553 44 8899996654
No 136
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.38 E-value=0.17 Score=48.41 Aligned_cols=46 Identities=28% Similarity=0.622 Sum_probs=34.9
Q ss_pred cccccccc-ccCc----EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 23 RCCICLDL-LYKP----IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 23 ~C~IC~~~-l~~P----v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
.||+|... +..| ++-+|||..|.+|+...+.. +...||.|-..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchhhh
Confidence 58999864 3344 22379999999999987763 67789999877654
No 137
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=0.13 Score=48.12 Aligned_cols=49 Identities=18% Similarity=0.435 Sum_probs=40.6
Q ss_pred CCcccccccccccCc----EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCC
Q 039128 20 HSFRCCICLDLLYKP----IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHF 70 (404)
Q Consensus 20 ~~l~C~IC~~~l~~P----v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~ 70 (404)
..+.||+|...|.+. |+-+|||+||..|+.+++. +-..||+|..++...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir--~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR--KDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc--ccccccCCCCcCccc
Confidence 568999999999764 3457999999999999887 556799999888753
No 138
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=0.064 Score=53.55 Aligned_cols=45 Identities=24% Similarity=0.613 Sum_probs=36.9
Q ss_pred ceeeeecccCccCc-----eecccCCcchHHhhccccc--ccCCCccCCccc
Q 039128 195 DVLCTACKQLLIHP-----VVLNCGHVYCETCIITPTV--QQLKCEVCQCLN 239 (404)
Q Consensus 195 ~~~C~iC~~~~~~p-----~~l~CgH~fC~~Cl~~~~~--~~~~CP~Cr~~~ 239 (404)
..+||||++-+.-| +.+.|||.|-..||++|+. ....||.|....
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 35799999988766 4568999999999999963 457899997754
No 139
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.87 E-value=0.098 Score=48.92 Aligned_cols=43 Identities=26% Similarity=0.766 Sum_probs=29.6
Q ss_pred cccccccccc-cCcEE-ccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 22 FRCCICLDLL-YKPIV-LSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 22 l~C~IC~~~l-~~Pv~-l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
+-|-.|...- .+|.. ++|+|+||..|..... ...||+|++.+.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~----~~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS----PDVCPLCKKSIR 48 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC----ccccccccceee
Confidence 4566666532 34544 5799999999975432 227999999975
No 140
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.82 E-value=0.12 Score=50.47 Aligned_cols=53 Identities=25% Similarity=0.539 Sum_probs=41.6
Q ss_pred cccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 16 EKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 16 ~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
+.-.+...|.||-+-+.--.++||+|-.|..|..+.-.-..+..||+||....
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 34456689999999887777899999999999876433235677999998754
No 141
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.81 E-value=0.14 Score=50.17 Aligned_cols=46 Identities=22% Similarity=0.527 Sum_probs=40.0
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhccc--ccccCCCccCCcc
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITP--TVQQLKCEVCQCL 238 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~--~~~~~~CP~Cr~~ 238 (404)
++...|.||-.-++-..++||+|..|.-|..+. +-....||+||..
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 566789999999998889999999999999875 4567889999984
No 142
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=0.1 Score=50.67 Aligned_cols=49 Identities=27% Similarity=0.518 Sum_probs=40.8
Q ss_pred ccccceeeeecccCccCceecc-cCCcchHHhhcccccccCCCccCCccc
Q 039128 191 ISIVDVLCTACKQLLIHPVVLN-CGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 191 ~~~~~~~C~iC~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
...+.-.||||++.-.+|.++. -|-+||..|+..+......||+-..+.
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3345567999999999998775 599999999999988888999876653
No 143
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.51 E-value=0.069 Score=52.98 Aligned_cols=45 Identities=27% Similarity=0.668 Sum_probs=38.0
Q ss_pred Cccccccccccc-Cc---EEccCCCcccHHHHHHhHcCCCCCCCCCCCc
Q 039128 21 SFRCCICLDLLY-KP---IVLSCGHISCFWCVHRSMNGLRESHCPICRR 65 (404)
Q Consensus 21 ~l~C~IC~~~l~-~P---v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~ 65 (404)
.+.|-.|.+.+- +| -.++|.|+|+..|+.+.+.+.+..+||-||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 588999999873 23 3489999999999999998878889999984
No 144
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=91.50 E-value=0.02 Score=38.92 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=28.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHH-HHHHHHHHhhcCcc
Q 039128 312 VGCDSCGTGQFCLALKLYLTIT-WMLLYAAYRLLDRD 347 (404)
Q Consensus 312 v~C~~C~~~p~~~a~k~~~~~~-~~~~~~~~~~~~~~ 347 (404)
+.||+||+.||.-..=+|+.|. +.+|+.|+.....+
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~~n~ 37 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMGNE 37 (43)
T ss_pred CCCCCCCCCcccccceEeCCCCCCccHHHHhhhhcCh
Confidence 5799999999987666666555 77999999877443
No 145
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=91.43 E-value=0.16 Score=36.02 Aligned_cols=46 Identities=30% Similarity=0.696 Sum_probs=23.3
Q ss_pred CcccccccccccCcEEc-cCCCcccHHH--HHHhHcCCCCCCCCCCCcC
Q 039128 21 SFRCCICLDLLYKPIVL-SCGHISCFWC--VHRSMNGLRESHCPICRRP 66 (404)
Q Consensus 21 ~l~C~IC~~~l~~Pv~l-~CGH~fC~~C--i~~~~~~~~~~~CP~CR~~ 66 (404)
.+.|||....+..|+.. .|.|.-|+.= ........+...||+|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 47899999999999985 5999976543 2232333456789999763
No 146
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=0.11 Score=51.52 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=32.5
Q ss_pred eeeeecccCccCce---ec-ccCCcchHHhhccccc--cc-CCCccCCcccC
Q 039128 196 VLCTACKQLLIHPV---VL-NCGHVYCETCIITPTV--QQ-LKCEVCQCLNP 240 (404)
Q Consensus 196 ~~C~iC~~~~~~p~---~l-~CgH~fC~~Cl~~~~~--~~-~~CP~Cr~~~~ 240 (404)
..|.||.+.+-+-- .+ .|||+|...|+..|+. +. ..||+|+-.++
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 46999976654322 22 4999999999999964 33 57999994443
No 147
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=0.058 Score=41.22 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=31.8
Q ss_pred eeeecccCccC------------ceec-ccCCcchHHhhcccc---cccCCCccCCccc
Q 039128 197 LCTACKQLLIH------------PVVL-NCGHVYCETCIITPT---VQQLKCEVCQCLN 239 (404)
Q Consensus 197 ~C~iC~~~~~~------------p~~l-~CgH~fC~~Cl~~~~---~~~~~CP~Cr~~~ 239 (404)
+|-||.-.|.. |+++ -|.|.|...||.+|+ .....||.||+..
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 57777665542 4444 599999999999984 3456899999864
No 148
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=0.13 Score=54.02 Aligned_cols=46 Identities=39% Similarity=0.816 Sum_probs=36.1
Q ss_pred ccccCCCccccccccccc----CcEEccCCCcccHHHHHHhHcCCCCCCCCCCCc
Q 039128 15 PEKISHSFRCCICLDLLY----KPIVLSCGHISCFWCVHRSMNGLRESHCPICRR 65 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~----~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~ 65 (404)
+-.+.+.+.|+||+..|. .||.+.|||+.|..|+....+. .|| |..
T Consensus 5 a~~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~----scp-~~~ 54 (861)
T KOG3161|consen 5 ALKWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA----SCP-TKR 54 (861)
T ss_pred chhhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc----cCC-CCc
Confidence 345667899999988763 6999999999999999887652 477 433
No 149
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.07 E-value=0.17 Score=49.53 Aligned_cols=57 Identities=26% Similarity=0.605 Sum_probs=43.7
Q ss_pred ccceeeeecccCccCceeccc--CCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVLNC--GHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEE 256 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~C--gH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~ 256 (404)
.+-+.||||.+.+..|+ ..| ||.-|..|-. +....||.||.++.. ..+..++.+++.
T Consensus 46 ~~lleCPvC~~~l~~Pi-~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~---~R~~amEkV~e~ 104 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPI-FQCDNGHLACSSCRT---KVSNKCPTCRLPIGN---IRCRAMEKVAEA 104 (299)
T ss_pred hhhccCchhhccCcccc-eecCCCcEehhhhhh---hhcccCCcccccccc---HHHHHHHHHHHh
Confidence 45578999999998885 456 8999999975 345689999998863 366667666654
No 150
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.91 E-value=0.088 Score=57.06 Aligned_cols=43 Identities=23% Similarity=0.663 Sum_probs=36.9
Q ss_pred eeeeecccCccCceecccCCcchHHhhccccc--ccCCCccCCccc
Q 039128 196 VLCTACKQLLIHPVVLNCGHVYCETCIITPTV--QQLKCEVCQCLN 239 (404)
Q Consensus 196 ~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~--~~~~CP~Cr~~~ 239 (404)
..|.+|.+ ...++.++|||.||..|+..... ....||.||..+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 78999999 88889999999999999998742 334799999865
No 151
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.73 E-value=0.29 Score=47.64 Aligned_cols=46 Identities=33% Similarity=0.697 Sum_probs=37.2
Q ss_pred Cccccccccccc------CcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCC
Q 039128 21 SFRCCICLDLLY------KPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPY 67 (404)
Q Consensus 21 ~l~C~IC~~~l~------~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~ 67 (404)
.+.|-||-+.|. -|..+.|||++|..|+...... ....||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN-SRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcC-ceeeccCCCCcc
Confidence 467888888774 4888999999999999887664 455689999986
No 152
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=90.32 E-value=0.16 Score=39.18 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=26.0
Q ss_pred ccCCcchHHhhcccccccCCCccCCccc
Q 039128 212 NCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 212 ~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
.|-|.|...||.+|+.....||++|+..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 5999999999999999999999999875
No 153
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=0.65 Score=46.69 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=34.7
Q ss_pred CCCccccccccccc---CcEEccCCCcccHHHHHHhHcC---CCC---CCCCCCCcCC
Q 039128 19 SHSFRCCICLDLLY---KPIVLSCGHISCFWCVHRSMNG---LRE---SHCPICRRPY 67 (404)
Q Consensus 19 ~~~l~C~IC~~~l~---~Pv~l~CGH~fC~~Ci~~~~~~---~~~---~~CP~CR~~~ 67 (404)
+..+.|.||.+..- .=+.++|+|+||+.|+..++.. .+. ..||-+.-.-
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~ 239 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS 239 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence 45689999998753 2356899999999999887762 232 3476665443
No 154
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=0.48 Score=43.76 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=35.5
Q ss_pred eeeecccCcc--CceecccCCcchHHhhcccc--------cccCCCccCCccc
Q 039128 197 LCTACKQLLI--HPVVLNCGHVYCETCIITPT--------VQQLKCEVCQCLN 239 (404)
Q Consensus 197 ~C~iC~~~~~--~p~~l~CgH~fC~~Cl~~~~--------~~~~~CP~Cr~~~ 239 (404)
.|..|...|. +-+.|.|-|.|.+.|+..+. -...+||.|..++
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 4999998886 45778999999999999872 2467999998876
No 155
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=89.81 E-value=0.45 Score=41.76 Aligned_cols=54 Identities=22% Similarity=0.552 Sum_probs=36.8
Q ss_pred CCcccccccccccCcEEccCC-C-----------cc-cHHHHHHhHcC-----------------------------CCC
Q 039128 20 HSFRCCICLDLLYKPIVLSCG-H-----------IS-CFWCVHRSMNG-----------------------------LRE 57 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l~CG-H-----------~f-C~~Ci~~~~~~-----------------------------~~~ 57 (404)
++.+||||++.-++.|+|-|. | .| ...|+.++-+. ...
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 467999999999999998543 1 11 45666554321 013
Q ss_pred CCCCCCCcCCCCCCch
Q 039128 58 SHCPICRRPYNHFPSI 73 (404)
Q Consensus 58 ~~CP~CR~~~~~~~~~ 73 (404)
..||+||..+.....+
T Consensus 81 L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 81 LACPLCRGEVKGWTVV 96 (162)
T ss_pred ccCccccCceeceEEc
Confidence 5699999999876544
No 156
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=0.24 Score=40.10 Aligned_cols=46 Identities=22% Similarity=0.597 Sum_probs=33.5
Q ss_pred CCccccccccccc--------Cc--------EE-ccCCCcccHHHHHHhHcCCCCCCCCCCCcCC
Q 039128 20 HSFRCCICLDLLY--------KP--------IV-LSCGHISCFWCVHRSMNGLRESHCPICRRPY 67 (404)
Q Consensus 20 ~~l~C~IC~~~l~--------~P--------v~-l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~ 67 (404)
....|.||...+- ++ |. -.|.|.|..-||.+|++ ....||+|.+.-
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlk--tr~vCPLdn~eW 107 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLK--TRNVCPLDNKEW 107 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHh--hcCcCCCcCcce
Confidence 3467889886442 11 11 25999999999999998 456799998754
No 157
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.67 E-value=0.52 Score=32.25 Aligned_cols=40 Identities=20% Similarity=0.454 Sum_probs=25.2
Q ss_pred cccccccccCcEEcc---CCCcccHHHHHHhHcCCCCCCCCCC
Q 039128 24 CCICLDLLYKPIVLS---CGHISCFWCVHRSMNGLRESHCPIC 63 (404)
Q Consensus 24 C~IC~~~l~~Pv~l~---CGH~fC~~Ci~~~~~~~~~~~CP~C 63 (404)
|.+|.+++..-+..+ |+=.+...|+..+++......||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678999988887765 9989999999999986555579987
No 158
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.66 E-value=0.12 Score=56.43 Aligned_cols=48 Identities=17% Similarity=0.405 Sum_probs=36.9
Q ss_pred ccceeeeecccCcc--C---c--eecccCCcchHHhhcccc--cccCCCccCCcccC
Q 039128 193 IVDVLCTACKQLLI--H---P--VVLNCGHVYCETCIITPT--VQQLKCEVCQCLNP 240 (404)
Q Consensus 193 ~~~~~C~iC~~~~~--~---p--~~l~CgH~fC~~Cl~~~~--~~~~~CP~Cr~~~~ 240 (404)
.+.-.|+||+.++. + | ..-.|.|-|...|+..|+ .....||+||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45567999999886 1 2 122589999999999995 46789999997653
No 159
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=88.53 E-value=0.072 Score=56.91 Aligned_cols=54 Identities=22% Similarity=0.668 Sum_probs=45.3
Q ss_pred ccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCC-CCCCCCCCcCCC
Q 039128 15 PEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLR-ESHCPICRRPYN 68 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~-~~~CP~CR~~~~ 68 (404)
...+...+.|+||...+.+|+.+.|-|.||..|+...+...+ ...||+|+..+.
T Consensus 15 i~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 15 INAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred HHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 345577899999999999999999999999999988777554 567999986553
No 160
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.37 E-value=0.23 Score=53.92 Aligned_cols=42 Identities=31% Similarity=0.711 Sum_probs=35.3
Q ss_pred CcccccccccccCcEE-ccCCCcccHHHHHHhHcCCCCCCCCCCCcCC
Q 039128 21 SFRCCICLDLLYKPIV-LSCGHISCFWCVHRSMNGLRESHCPICRRPY 67 (404)
Q Consensus 21 ~l~C~IC~~~l~~Pv~-l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~ 67 (404)
.-.|..|.-.|.-|++ ..|||.|+..|+.. +...||.|+...
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~-----~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLED-----KEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhcc-----CcccCCccchhh
Confidence 3589999999999976 68999999999873 667899997743
No 161
>PF04641 Rtf2: Rtf2 RING-finger
Probab=88.06 E-value=1.1 Score=43.00 Aligned_cols=50 Identities=16% Similarity=0.436 Sum_probs=38.4
Q ss_pred cCCCcccccccccccC--c-EE-ccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCC
Q 039128 18 ISHSFRCCICLDLLYK--P-IV-LSCGHISCFWCVHRSMNGLRESHCPICRRPYNHF 70 (404)
Q Consensus 18 l~~~l~C~IC~~~l~~--P-v~-l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~ 70 (404)
-...+.|||....|.. + |. .+|||+|+..+|... . ....||+|..++...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k--~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-K--KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-c--ccccccccCCccccC
Confidence 3567999999998842 2 33 489999999999885 2 345699999998753
No 162
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=87.87 E-value=1.3 Score=51.07 Aligned_cols=62 Identities=32% Similarity=0.616 Sum_probs=41.8
Q ss_pred CCCccccccccc-c--cCcEEccCCCcccHHHHHHhHcCC--------CCCCCCCCCcCCCCCCchhHHHHHHHHHHc
Q 039128 19 SHSFRCCICLDL-L--YKPIVLSCGHISCFWCVHRSMNGL--------RESHCPICRRPYNHFPSICVMLHRLLLKMY 85 (404)
Q Consensus 19 ~~~l~C~IC~~~-l--~~Pv~l~CGH~fC~~Ci~~~~~~~--------~~~~CP~CR~~~~~~~~~~~~l~~~l~~~~ 85 (404)
..+..|-||+-- + ...+.|.|||+|...|....+... +-..||+|..++.+ ..++.+|+-+-
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH-----~~LkDLldPiK 3556 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH-----IVLKDLLDPIK 3556 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh-----HHHHHHHHHHH
Confidence 456789999854 2 234679999999999997665421 23479999887754 33555555443
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=87.80 E-value=0.47 Score=46.37 Aligned_cols=49 Identities=24% Similarity=0.648 Sum_probs=35.1
Q ss_pred CCcccccccccccC----cEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLYK----PIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~~----Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
++..||+|.+.+.. =.-.+||.-.|+.|+...-.. -...||-||..+..
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhccc
Confidence 34459999997742 122579999999998764332 34579999998864
No 164
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=87.39 E-value=0.23 Score=40.46 Aligned_cols=33 Identities=30% Similarity=0.797 Sum_probs=26.9
Q ss_pred ccCCCcccccccccccCcE--EccCCCcccHHHHH
Q 039128 17 KISHSFRCCICLDLLYKPI--VLSCGHISCFWCVH 49 (404)
Q Consensus 17 ~l~~~l~C~IC~~~l~~Pv--~l~CGH~fC~~Ci~ 49 (404)
.+.+.-.|++|...+...+ +.||||.|+..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4566788999999988654 36999999999974
No 165
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.98 E-value=0.36 Score=52.48 Aligned_cols=40 Identities=35% Similarity=0.721 Sum_probs=34.3
Q ss_pred eeeeecccCccCcee-cccCCcchHHhhcccccccCCCccCCcc
Q 039128 196 VLCTACKQLLIHPVV-LNCGHVYCETCIITPTVQQLKCEVCQCL 238 (404)
Q Consensus 196 ~~C~iC~~~~~~p~~-l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~ 238 (404)
-.|..|...|.-|++ ..|||+|.+.|+. .....||.|+..
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 479999999999965 5899999999998 556789999764
No 166
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=86.42 E-value=0.28 Score=39.85 Aligned_cols=31 Identities=35% Similarity=0.702 Sum_probs=25.4
Q ss_pred cceeeeecccCccCce--ecccCCcchHHhhcc
Q 039128 194 VDVLCTACKQLLIHPV--VLNCGHVYCETCIIT 224 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~--~l~CgH~fC~~Cl~~ 224 (404)
++-.|++|.+.|.+.+ +.||||.|+..|+.+
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 3456999999998774 559999999999864
No 167
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=85.25 E-value=0.39 Score=33.39 Aligned_cols=43 Identities=21% Similarity=0.620 Sum_probs=26.0
Q ss_pred eeeecccCccCceeccc-CCcchHHhhcccccccCCCccCCcccCC
Q 039128 197 LCTACKQLLIHPVVLNC-GHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 197 ~C~iC~~~~~~p~~l~C-gH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
.|.-|. |.+--.+.| .|-.|..|+...+..+..||+|.++++.
T Consensus 4 nCKsCW--f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCW--FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS---S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhh--hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 455564 344455677 5999999999999999999999998865
No 168
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=84.73 E-value=0.29 Score=47.11 Aligned_cols=49 Identities=33% Similarity=0.697 Sum_probs=36.8
Q ss_pred CCccccccccccc-Cc--EEccCCCcccHHHHHHhHc---------------------CCCCCCCCCCCcCCC
Q 039128 20 HSFRCCICLDLLY-KP--IVLSCGHISCFWCVHRSMN---------------------GLRESHCPICRRPYN 68 (404)
Q Consensus 20 ~~l~C~IC~~~l~-~P--v~l~CGH~fC~~Ci~~~~~---------------------~~~~~~CP~CR~~~~ 68 (404)
..-.|.||+--|. .| +.++|-|.|.+.|+.+++. .+....||+||..+.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 3578999998775 35 4578999999999977764 112346999999875
No 169
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=0.55 Score=47.00 Aligned_cols=49 Identities=24% Similarity=0.435 Sum_probs=37.8
Q ss_pred cccccceeeeecccCcc---CceecccCCcchHHhhccccc---ccCCCccCCcc
Q 039128 190 QISIVDVLCTACKQLLI---HPVVLNCGHVYCETCIITPTV---QQLKCEVCQCL 238 (404)
Q Consensus 190 ~~~~~~~~C~iC~~~~~---~p~~l~CgH~fC~~Cl~~~~~---~~~~CP~Cr~~ 238 (404)
...-.-+.|||=.+.-+ -|+.|.|||+.++.-+.+... ..+.||-|-..
T Consensus 329 ~~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 329 YHFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ccccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 44567789999776554 378999999999999999743 34899999553
No 170
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=84.12 E-value=0.66 Score=44.67 Aligned_cols=43 Identities=35% Similarity=0.821 Sum_probs=34.7
Q ss_pred Cccccccccccc----CcEEccCCCcccHHHHHHhHcCCCCCCCCCCCc
Q 039128 21 SFRCCICLDLLY----KPIVLSCGHISCFWCVHRSMNGLRESHCPICRR 65 (404)
Q Consensus 21 ~l~C~IC~~~l~----~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~ 65 (404)
..-||||.+.+. .|..++|||.....|....... + ..||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~-~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE-G-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc-C-CCCCcccc
Confidence 455999999764 4677899999999999886663 3 88999977
No 171
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.08 E-value=0.41 Score=38.83 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=25.1
Q ss_pred ccCCcchHHhhcccccccCCCccCCcc
Q 039128 212 NCGHVYCETCIITPTVQQLKCEVCQCL 238 (404)
Q Consensus 212 ~CgH~fC~~Cl~~~~~~~~~CP~Cr~~ 238 (404)
.|-|.|...||.+|++....||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 599999999999999999999999875
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=83.92 E-value=0.72 Score=45.12 Aligned_cols=46 Identities=17% Similarity=0.389 Sum_probs=33.3
Q ss_pred eeeeecccCccC--cee--cccCCcchHHhhcccc-cccCCCccCCcccCC
Q 039128 196 VLCTACKQLLIH--PVV--LNCGHVYCETCIITPT-VQQLKCEVCQCLNPN 241 (404)
Q Consensus 196 ~~C~iC~~~~~~--p~~--l~CgH~fC~~Cl~~~~-~~~~~CP~Cr~~~~~ 241 (404)
..||+|.+.+.- --. -+||-..|+-|+.... .-..+||.||..+.+
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 349999987642 222 2699999999987753 345689999998744
No 173
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=83.84 E-value=1.5 Score=42.65 Aligned_cols=46 Identities=7% Similarity=-0.044 Sum_probs=35.9
Q ss_pred cccceeeeecccCccCceecccCCc-chHHhhcccccccCCCccCCccc
Q 039128 192 SIVDVLCTACKQLLIHPVVLNCGHV-YCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
+...+.|-+|..-+......+|+|+ ||..|.. ..-...||+|....
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 3456789999988877778899998 8999987 44556799997643
No 174
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.29 E-value=0.52 Score=50.55 Aligned_cols=47 Identities=19% Similarity=0.507 Sum_probs=40.2
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccc---cccCCCccCCccc
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPT---VQQLKCEVCQCLN 239 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~---~~~~~CP~Cr~~~ 239 (404)
...+.|+||...+.+|+.+.|-|.||..|+...+ .....||+|+...
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 4567899999999999999999999999998863 3467899998655
No 175
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=83.25 E-value=0.91 Score=38.68 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=40.4
Q ss_pred CCcccccccccccCcEEc----cCCCcccHHHHHHhHcCC-CCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLYKPIVL----SCGHISCFWCVHRSMNGL-RESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l----~CGH~fC~~Ci~~~~~~~-~~~~CP~CR~~~~~ 69 (404)
....|-||.+...+.-.| -||...|-.|....|+.. ....||+|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 457899999988777665 299999999999999854 34569999988764
No 176
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=82.83 E-value=1.6 Score=38.49 Aligned_cols=49 Identities=29% Similarity=0.531 Sum_probs=37.3
Q ss_pred CCCcccccccccccCcEEccCCC-----cccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 19 SHSFRCCICLDLLYKPIVLSCGH-----ISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~CGH-----~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
...-.|-||.+--. +...||.- ..+.+|+.+|+...+...|++|+.++.
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 44568999998753 33445543 248999999999888889999999875
No 177
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.89 E-value=0.41 Score=50.47 Aligned_cols=38 Identities=34% Similarity=0.862 Sum_probs=30.4
Q ss_pred cceeeeecccCcc----CceecccCCcchHHhhcccccccCCCc
Q 039128 194 VDVLCTACKQLLI----HPVVLNCGHVYCETCIITPTVQQLKCE 233 (404)
Q Consensus 194 ~~~~C~iC~~~~~----~p~~l~CgH~fC~~Cl~~~~~~~~~CP 233 (404)
+-+.|+||...|. .|+.+-|||+.|..|+...... .||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~--scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA--SCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc--cCC
Confidence 3467999987775 6899999999999999876543 466
No 178
>PHA02862 5L protein; Provisional
Probab=81.35 E-value=1.5 Score=37.95 Aligned_cols=46 Identities=26% Similarity=0.562 Sum_probs=36.1
Q ss_pred cccccccccccCcEEccCCC-----cccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 22 FRCCICLDLLYKPIVLSCGH-----ISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 22 l~C~IC~~~l~~Pv~l~CGH-----~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
-.|-||++.-.+. .-||.. ..+..|+.+|++..++..|++|+.++.
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 4688999876544 355543 358999999999888889999999886
No 179
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=81.05 E-value=0.18 Score=35.55 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=26.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHH-HHHHHHHHhhc
Q 039128 312 VGCDSCGTGQFCLALKLYLTIT-WMLLYAAYRLL 344 (404)
Q Consensus 312 v~C~~C~~~p~~~a~k~~~~~~-~~~~~~~~~~~ 344 (404)
|.|+.|+..||....-+|+.|. +.+|+.|+..-
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g 34 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSG 34 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCC
Confidence 5799999999987766677665 88999999654
No 180
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=81.05 E-value=0.68 Score=44.83 Aligned_cols=42 Identities=21% Similarity=0.594 Sum_probs=30.2
Q ss_pred eeeeecccCccC-ceecccCCcchHHhhcccccccCCCccCCccc
Q 039128 196 VLCTACKQLLIH-PVVLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 196 ~~C~iC~~~~~~-p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
-.|.-|...+.- -..++|.|+||.+|.... ..+.||.|...+
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSD--SDKICPLCDDRV 133 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcC--ccccCcCcccHH
Confidence 457778654432 246799999999998753 367899997754
No 181
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=80.92 E-value=0.94 Score=38.60 Aligned_cols=47 Identities=23% Similarity=0.449 Sum_probs=38.6
Q ss_pred ceeeeecccCccCceecc----cCCcchHHhhccccc---ccCCCccCCcccCC
Q 039128 195 DVLCTACKQLLIHPVVLN----CGHVYCETCIITPTV---QQLKCEVCQCLNPN 241 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l~----CgH~fC~~Cl~~~~~---~~~~CP~Cr~~~~~ 241 (404)
-+.|.||.+.-.+...|. ||-+.|-.|....++ --..||+|+..+..
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 378999999999887773 999999999988643 45689999998744
No 182
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=79.16 E-value=0.52 Score=46.95 Aligned_cols=46 Identities=20% Similarity=0.480 Sum_probs=36.0
Q ss_pred ccceeeeecccCccC-c---eecccCCcchHHhhcccc--cccCCCccCCcc
Q 039128 193 IVDVLCTACKQLLIH-P---VVLNCGHVYCETCIITPT--VQQLKCEVCQCL 238 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~-p---~~l~CgH~fC~~Cl~~~~--~~~~~CP~Cr~~ 238 (404)
+-++.|..|.+.+-- | -.|||.|.|...|+.+++ .....||.||+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 456789999987642 2 357999999999999874 456789999953
No 183
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.79 E-value=3.3 Score=38.39 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=39.7
Q ss_pred CCccccccccccc--CcEEccCCCcccHHHHHHhHcCC------CCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLY--KPIVLSCGHISCFWCVHRSMNGL------RESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~--~Pv~l~CGH~fC~~Ci~~~~~~~------~~~~CP~CR~~~~~ 69 (404)
-.--|.+|.-.+. +-+.|.|-|.|...|+.++.... ....||-|..++..
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 3467999998885 57889999999999999876532 33579999998764
No 184
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=77.49 E-value=0.21 Score=34.56 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=27.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHH-HHHHHHHHhhc
Q 039128 312 VGCDSCGTGQFCLALKLYLTIT-WMLLYAAYRLL 344 (404)
Q Consensus 312 v~C~~C~~~p~~~a~k~~~~~~-~~~~~~~~~~~ 344 (404)
|.||.|++.||....=+|+.|. +.+|+.|+..-
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~~ 34 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKTR 34 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCCC
Confidence 6799999999987666666776 88999999873
No 185
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=77.08 E-value=1.6 Score=42.42 Aligned_cols=50 Identities=22% Similarity=0.433 Sum_probs=37.7
Q ss_pred ccCCCccccccccccc---CcEEccCCCcccHHHHHHhHcCC-CCCCCCCCCcC
Q 039128 17 KISHSFRCCICLDLLY---KPIVLSCGHISCFWCVHRSMNGL-RESHCPICRRP 66 (404)
Q Consensus 17 ~l~~~l~C~IC~~~l~---~Pv~l~CGH~fC~~Ci~~~~~~~-~~~~CP~CR~~ 66 (404)
.+...+.||+=.+.-. .|+.+.|||+.=.+-+...-+.. -++.||.|...
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 4567799998777653 48999999999999987754432 35789999554
No 186
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=75.84 E-value=2.2 Score=46.70 Aligned_cols=50 Identities=28% Similarity=0.561 Sum_probs=38.8
Q ss_pred ccccccceeeeecccCcc--Ccee--cccCCcchHHhhcccc-------cccCCCccCCcc
Q 039128 189 KQISIVDVLCTACKQLLI--HPVV--LNCGHVYCETCIITPT-------VQQLKCEVCQCL 238 (404)
Q Consensus 189 ~~~~~~~~~C~iC~~~~~--~p~~--l~CgH~fC~~Cl~~~~-------~~~~~CP~Cr~~ 238 (404)
..+....+.|.||.+.+. .|+. -.|-|+|...||..|. ...++||.|...
T Consensus 185 ~~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 185 EQLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred HHHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 345667899999999876 3442 2688999999999993 367899999853
No 187
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=74.51 E-value=1.4 Score=30.71 Aligned_cols=40 Identities=28% Similarity=0.634 Sum_probs=25.8
Q ss_pred ccccccccc--CcEEccCCC-----cccHHHHHHhHcCCCCCCCCCC
Q 039128 24 CCICLDLLY--KPIVLSCGH-----ISCFWCVHRSMNGLRESHCPIC 63 (404)
Q Consensus 24 C~IC~~~l~--~Pv~l~CGH-----~fC~~Ci~~~~~~~~~~~CP~C 63 (404)
|-||++.-. .|.+.||+- ..+..|+.+|+...+...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678887643 367777653 4588999999987677779887
No 188
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=74.45 E-value=3.1 Score=36.63 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=34.8
Q ss_pred cccceeeeecccCccCceecccCC-----cchHHhhcccc--cccCCCccCCccc
Q 039128 192 SIVDVLCTACKQLLIHPVVLNCGH-----VYCETCIITPT--VQQLKCEVCQCLN 239 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~l~CgH-----~fC~~Cl~~~~--~~~~~CP~Cr~~~ 239 (404)
+..+..|-||.+.-. +...||.. ...++|+.+|. .+...|++|+.++
T Consensus 5 s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 345668999998753 44557654 33899999995 4677899999875
No 189
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=71.70 E-value=1 Score=31.90 Aligned_cols=42 Identities=26% Similarity=0.448 Sum_probs=20.3
Q ss_pred eeeeecccCccCceec-ccCCcchHHhhccc-----ccccCCCccCCcc
Q 039128 196 VLCTACKQLLIHPVVL-NCGHVYCETCIITP-----TVQQLKCEVCQCL 238 (404)
Q Consensus 196 ~~C~iC~~~~~~p~~l-~CgH~fC~~Cl~~~-----~~~~~~CP~Cr~~ 238 (404)
+.||+....+..|+.. .|.|.-|.+= ..+ ....+.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 6799999999999854 7999865421 112 2456889999763
No 190
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=71.63 E-value=2.6 Score=28.79 Aligned_cols=38 Identities=24% Similarity=0.593 Sum_probs=20.4
Q ss_pred eeecccCccCceec---ccCCcchHHhhcccccccC--CCccC
Q 039128 198 CTACKQLLIHPVVL---NCGHVYCETCIITPTVQQL--KCEVC 235 (404)
Q Consensus 198 C~iC~~~~~~p~~l---~CgH~fC~~Cl~~~~~~~~--~CP~C 235 (404)
|.+|.++.+.-+.= .|+-.+...|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56777777665433 3888888899998865433 79987
No 191
>PHA03096 p28-like protein; Provisional
Probab=71.24 E-value=2.3 Score=41.30 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=30.4
Q ss_pred ccccccccccc-Cc-------EEccCCCcccHHHHHHhHcCC-CCCCCCCCCc
Q 039128 22 FRCCICLDLLY-KP-------IVLSCGHISCFWCVHRSMNGL-RESHCPICRR 65 (404)
Q Consensus 22 l~C~IC~~~l~-~P-------v~l~CGH~fC~~Ci~~~~~~~-~~~~CP~CR~ 65 (404)
-.|.||++... ++ +.-.|-|.||..|+..|.... ....||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 67999998653 33 223699999999999987643 2234666654
No 192
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=71.24 E-value=0.69 Score=35.06 Aligned_cols=40 Identities=28% Similarity=0.507 Sum_probs=21.8
Q ss_pred ceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCccc
Q 039128 195 DVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
++.||.|...|..- =||.+|..|-..+. ....||.|.+++
T Consensus 1 e~~CP~C~~~L~~~----~~~~~C~~C~~~~~-~~a~CPdC~~~L 40 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----GGHYHCEACQKDYK-KEAFCPDCGQPL 40 (70)
T ss_dssp --B-SSS-SBEEEE----TTEEEETTT--EEE-EEEE-TTT-SB-
T ss_pred CCcCCCCCCccEEe----CCEEECccccccce-ecccCCCcccHH
Confidence 35799998876432 18889999987653 334699998875
No 193
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.03 E-value=1.6 Score=41.89 Aligned_cols=37 Identities=24% Similarity=0.586 Sum_probs=30.9
Q ss_pred CCcccccccccccCcEEccC----CCcccHHHHHHhHcCCC
Q 039128 20 HSFRCCICLDLLYKPIVLSC----GHISCFWCVHRSMNGLR 56 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l~C----GH~fC~~Ci~~~~~~~~ 56 (404)
.-|.|.+|.+.|.+--+..| .|-||+-|-.++.+.++
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 34999999999998766655 79999999999988653
No 194
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=69.85 E-value=1.2 Score=43.10 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=25.3
Q ss_pred ceeeeecccCccC-c--eecccCCcchHHhhccc
Q 039128 195 DVLCTACKQLLIH-P--VVLNCGHVYCETCIITP 225 (404)
Q Consensus 195 ~~~C~iC~~~~~~-p--~~l~CgH~fC~~Cl~~~ 225 (404)
...|.||+.-|.+ | ++++|-|-|...|+.++
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRy 148 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARY 148 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHH
Confidence 3479999987765 3 46789999999999885
No 195
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=69.14 E-value=1.3 Score=50.41 Aligned_cols=51 Identities=35% Similarity=0.725 Sum_probs=42.3
Q ss_pred ccccCCCccccccccccc-CcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCC
Q 039128 15 PEKISHSFRCCICLDLLY-KPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPY 67 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~-~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~ 67 (404)
...+.....|+||++++. .-....|||.+|..|...|+. ....||.|....
T Consensus 1147 ~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~--~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1147 LMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY--ASSRCPICKSIK 1198 (1394)
T ss_pred HHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH--HhccCcchhhhh
Confidence 455667789999999998 567788999999999999888 567799997543
No 196
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.13 E-value=2.5 Score=39.19 Aligned_cols=38 Identities=24% Similarity=0.671 Sum_probs=30.2
Q ss_pred eeecccCccCceecccCCc-chHHhhcccccccCCCccCCccc
Q 039128 198 CTACKQLLIHPVVLNCGHV-YCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 198 C~iC~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
|-.|.+.-..-+++||-|. +|..|-.. ...||+|+.+.
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChh
Confidence 9999988777778899875 88888643 45699998865
No 197
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=69.07 E-value=1.2 Score=50.88 Aligned_cols=46 Identities=22% Similarity=0.566 Sum_probs=39.8
Q ss_pred cceeeeecccCcc-CceecccCCcchHHhhcccccccCCCccCCccc
Q 039128 194 VDVLCTACKQLLI-HPVVLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 194 ~~~~C~iC~~~~~-~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
....|+||++.+. .-....|||.+|..|...|......||.|....
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 4458999999998 456778999999999999999999999998654
No 198
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=68.95 E-value=0.46 Score=32.86 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=26.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHH-HHHHHHHHHhh
Q 039128 312 VGCDSCGTGQFCLALKLYLTI-TWMLLYAAYRL 343 (404)
Q Consensus 312 v~C~~C~~~p~~~a~k~~~~~-~~~~~~~~~~~ 343 (404)
+.||.|+..||...-=+|..| .+.+|+.|+..
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 468999988887777777788 58999999984
No 199
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.55 E-value=3.4 Score=38.28 Aligned_cols=39 Identities=33% Similarity=0.748 Sum_probs=30.1
Q ss_pred cccccccccCcEEccCCCc-ccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 24 CCICLDLLYKPIVLSCGHI-SCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 24 C~IC~~~l~~Pv~l~CGH~-fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
|-+|.+--..-+++||-|. +|..|-.. ...||+|+....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES------LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc------CccCCCCcChhh
Confidence 9999987777667899986 89999532 345999988654
No 200
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=65.34 E-value=1.5 Score=40.96 Aligned_cols=46 Identities=26% Similarity=0.566 Sum_probs=33.3
Q ss_pred cceeeeeccc-CccCc-ee---cc-cCCcchHHhhcccc-cccCCCc--cCCccc
Q 039128 194 VDVLCTACKQ-LLIHP-VV---LN-CGHVYCETCIITPT-VQQLKCE--VCQCLN 239 (404)
Q Consensus 194 ~~~~C~iC~~-~~~~p-~~---l~-CgH~fC~~Cl~~~~-~~~~~CP--~Cr~~~ 239 (404)
.+-.||||.. .+-+| +. -| |-|.+|.+|+.+.+ .+.-.|| -|.+.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 4557999974 44455 21 24 99999999999975 4566899 887754
No 201
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=64.70 E-value=0.73 Score=32.36 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=30.1
Q ss_pred cCCCCCCcHHHHHHHHHHHHH---HHHHHHHHhhcCccccccCC
Q 039128 313 GCDSCGTGQFCLALKLYLTIT---WMLLYAAYRLLDRDEDKICH 353 (404)
Q Consensus 313 ~C~~C~~~p~~~a~k~~~~~~---~~~~~~~~~~~~~~~~~~~~ 353 (404)
.|+.|++.||...-=+|+.|. +.+|+.|+..-. .-+..|
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~--~H~~~H 43 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE--SHQEDH 43 (48)
T ss_pred CCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC--CCCCCC
Confidence 599999999986666777887 999999998764 334444
No 202
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=64.66 E-value=9.2 Score=44.59 Aligned_cols=58 Identities=22% Similarity=0.532 Sum_probs=39.0
Q ss_pred ccceeeeecccC-cc-Cc-eecccCCcchHHhhccccc----------ccCCCccCCcccCCCCCcchHHHHHHHHH
Q 039128 193 IVDVLCTACKQL-LI-HP-VVLNCGHVYCETCIITPTV----------QQLKCEVCQCLNPNGFPKVCLELDQFLEE 256 (404)
Q Consensus 193 ~~~~~C~iC~~~-~~-~p-~~l~CgH~fC~~Cl~~~~~----------~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~ 256 (404)
..+..|-||... |. .| +.|.|+|.|...|..+.++ .-..||+|..++.. +.|+.+++-
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH------~~LkDLldP 3554 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH------IVLKDLLDP 3554 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh------HHHHHHHHH
Confidence 456789999753 22 23 5789999999999977432 22479999876532 345555544
No 203
>PHA03096 p28-like protein; Provisional
Probab=62.36 E-value=3.3 Score=40.28 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=28.9
Q ss_pred eeeeecccCccCc--------eecccCCcchHHhhccccc---ccCCCccCCc
Q 039128 196 VLCTACKQLLIHP--------VVLNCGHVYCETCIITPTV---QQLKCEVCQC 237 (404)
Q Consensus 196 ~~C~iC~~~~~~p--------~~l~CgH~fC~~Cl~~~~~---~~~~CP~Cr~ 237 (404)
..|.||++....- ....|-|.||..|+..|.. ....||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5799999865431 2236999999999998832 3345666654
No 204
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.07 E-value=23 Score=33.59 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=35.5
Q ss_pred CCCccccccccccc----CcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCC
Q 039128 19 SHSFRCCICLDLLY----KPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHF 70 (404)
Q Consensus 19 ~~~l~C~IC~~~l~----~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~ 70 (404)
+..|.|||-.-.|. --+.-.|||+|=..-+.+. +...|++|.+.+...
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei----kas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI----KASVCHVCGAAYQED 160 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh----hhccccccCCccccc
Confidence 56699998765553 2345689999998877653 467799999998753
No 205
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=61.91 E-value=3.7 Score=39.90 Aligned_cols=43 Identities=21% Similarity=0.577 Sum_probs=27.5
Q ss_pred cccccccccc-cCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 22 FRCCICLDLL-YKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 22 l~C~IC~~~l-~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
-.|.-|-..+ .--..++|.|+||.+|.... .-+.||.|-..+.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~----~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSD----SDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcC----ccccCcCcccHHH
Confidence 3455554422 22234799999999998542 2346999976654
No 206
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=61.85 E-value=3.7 Score=28.62 Aligned_cols=32 Identities=31% Similarity=0.952 Sum_probs=21.3
Q ss_pred EccCC-CcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 36 VLSCG-HISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 36 ~l~CG-H~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
...|. |..|..|+...+. .+..||+|..++..
T Consensus 15 Li~C~dHYLCl~CLt~ml~--~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLS--RSDRCPICGKPLPT 47 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-S--SSSEETTTTEE---
T ss_pred eeeecchhHHHHHHHHHhc--cccCCCcccCcCcc
Confidence 34565 8899999998777 66789999887653
No 207
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=60.33 E-value=5.3 Score=28.42 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=24.9
Q ss_pred CCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcC
Q 039128 20 HSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRP 66 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~ 66 (404)
+.+.||.|.+.+... .+..-|........+...||+|...
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 368899999954432 2334455444444456779999763
No 208
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=59.97 E-value=8.6 Score=31.17 Aligned_cols=51 Identities=18% Similarity=0.387 Sum_probs=27.9
Q ss_pred cccccCCCCCCCccccccccccccceeeeecccCccCceec--ccCCcchHHh
Q 039128 171 GITVAGKKLPPNELNHNCKQISIVDVLCTACKQLLIHPVVL--NCGHVYCETC 221 (404)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~p~~l--~CgH~fC~~C 221 (404)
+..+++..+....++...--...++++|..|.-+-.....- .=|+.+|..|
T Consensus 46 ~feLPgaDls~EEL~V~ViP~q~DEFTCssCFLV~HRSqLa~~~~g~~iC~DC 98 (99)
T PF13834_consen 46 SFELPGADLSGEELSVRVIPKQADEFTCSSCFLVHHRSQLAREKDGQPICRDC 98 (99)
T ss_pred cccCCCccccCCeEEEEEecCCCCceeeeeeeeEechhhhccccCCCEecccc
Confidence 33444444444433333222336889999997554433211 2378888877
No 209
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=59.00 E-value=4.6 Score=39.34 Aligned_cols=47 Identities=28% Similarity=0.521 Sum_probs=36.1
Q ss_pred ccccceeeeecccCcc---CceecccCCcchHHhhccccc---ccCCCccCCc
Q 039128 191 ISIVDVLCTACKQLLI---HPVVLNCGHVYCETCIITPTV---QQLKCEVCQC 237 (404)
Q Consensus 191 ~~~~~~~C~iC~~~~~---~p~~l~CgH~fC~~Cl~~~~~---~~~~CP~Cr~ 237 (404)
....-++||+=.+.-+ -|+.+.|||+.-..-+....+ ..+.||-|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 3456789999777655 378999999999999888632 4688999944
No 210
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=58.41 E-value=3.7 Score=35.19 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=32.0
Q ss_pred ccceeeeecccCccC--c-eecccC------CcchHHhhcccccccCCCccCCc
Q 039128 193 IVDVLCTACKQLLIH--P-VVLNCG------HVYCETCIITPTVQQLKCEVCQC 237 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~--p-~~l~Cg------H~fC~~Cl~~~~~~~~~CP~Cr~ 237 (404)
.....|.||++.+.+ - |.++|| |.||..|+.+|.....+=|.=|.
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~ 77 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNRN 77 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcccc
Confidence 446889999998877 2 345777 88999999999544444444343
No 211
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=58.16 E-value=0.65 Score=31.78 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=25.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHH-HHHHHHHHHhhc
Q 039128 312 VGCDSCGTGQFCLALKLYLTI-TWMLLYAAYRLL 344 (404)
Q Consensus 312 v~C~~C~~~p~~~a~k~~~~~-~~~~~~~~~~~~ 344 (404)
|.|+.|+. ||....=+|+.| .+.+|+.|+..-
T Consensus 1 v~Cd~C~~-~i~G~ry~C~~C~d~dLC~~C~~~~ 33 (43)
T cd02340 1 VICDGCQG-PIVGVRYKCLVCPDYDLCESCEAKG 33 (43)
T ss_pred CCCCCCCC-cCcCCeEECCCCCCccchHHhhCcC
Confidence 56999998 887666667788 599999998864
No 212
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=56.00 E-value=5.7 Score=37.28 Aligned_cols=48 Identities=29% Similarity=0.611 Sum_probs=34.8
Q ss_pred CCccccccccc-ccCc-EE---cc-CCCcccHHHHHHhHcCCCCCCCC--CCCcCCC
Q 039128 20 HSFRCCICLDL-LYKP-IV---LS-CGHISCFWCVHRSMNGLRESHCP--ICRRPYN 68 (404)
Q Consensus 20 ~~l~C~IC~~~-l~~P-v~---l~-CGH~fC~~Ci~~~~~~~~~~~CP--~CR~~~~ 68 (404)
.+..||||... +-.| |. -| |=|..|.+|+.+.+.. +...|| -|.+-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHHH
Confidence 35689999974 3345 21 24 9999999999998874 667798 7755443
No 213
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=56.00 E-value=0.13 Score=35.68 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=23.0
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHHH-HHHHHHHHhh
Q 039128 308 VHVGVGCDSCGTGQFCLALKLYLTIT-WMLLYAAYRL 343 (404)
Q Consensus 308 ~h~~v~C~~C~~~p~~~a~k~~~~~~-~~~~~~~~~~ 343 (404)
+|.++.|+.|+..||....=+|+.|. +.+|+.|+..
T Consensus 1 ~h~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 1 IHHGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp -CSSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred CCCCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence 36788899999877765443444555 8889999876
No 214
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=55.52 E-value=11 Score=26.89 Aligned_cols=25 Identities=20% Similarity=0.618 Sum_probs=15.1
Q ss_pred ccCCcchHHhhcccccccCCCccCC
Q 039128 212 NCGHVYCETCIITPTVQQLKCEVCQ 236 (404)
Q Consensus 212 ~CgH~fC~~Cl~~~~~~~~~CP~Cr 236 (404)
.|++.||.+|=.=..+....||-|.
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 5899999999654456667899884
No 215
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.23 E-value=15 Score=38.14 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=28.4
Q ss_pred ccceeeeecccCccC-ceecccCCcchHHhhcccc
Q 039128 193 IVDVLCTACKQLLIH-PVVLNCGHVYCETCIITPT 226 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~-p~~l~CgH~fC~~Cl~~~~ 226 (404)
.....|.||.+.+.. .+.+.|||.||..|+..++
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl 102 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYL 102 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHh
Confidence 456789999998875 6677999999999999863
No 216
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.07 E-value=9 Score=38.95 Aligned_cols=40 Identities=25% Similarity=0.605 Sum_probs=27.7
Q ss_pred cceeeeecccCccCc----eecccCCcchHHhhccccc------ccCCCc
Q 039128 194 VDVLCTACKQLLIHP----VVLNCGHVYCETCIITPTV------QQLKCE 233 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p----~~l~CgH~fC~~Cl~~~~~------~~~~CP 233 (404)
...+|.||..-...+ .+..|+|.||..|+.++.. ....||
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~ 194 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCP 194 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCC
Confidence 346799999433322 2457999999999998742 345665
No 217
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=53.46 E-value=5.9 Score=34.90 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=18.2
Q ss_pred cceeeeecccCccCceecccC
Q 039128 194 VDVLCTACKQLLIHPVVLNCG 214 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~~l~Cg 214 (404)
++.+||||++...+.|+|-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 357899999999999999774
No 218
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.96 E-value=10 Score=34.00 Aligned_cols=32 Identities=25% Similarity=0.701 Sum_probs=24.8
Q ss_pred ccCCCcccHHHHHHhHcCCC----C-----CCCCCCCcCCC
Q 039128 37 LSCGHISCFWCVHRSMNGLR----E-----SHCPICRRPYN 68 (404)
Q Consensus 37 l~CGH~fC~~Ci~~~~~~~~----~-----~~CP~CR~~~~ 68 (404)
..||..|..-|+..|++..- + ..||.|..++.
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 36999999999999987421 1 35999988764
No 219
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=51.43 E-value=12 Score=41.19 Aligned_cols=50 Identities=22% Similarity=0.592 Sum_probs=38.3
Q ss_pred CCCccccccccccc--CcEE--ccCCCcccHHHHHHhHcCC-----CCCCCCCCCcCCC
Q 039128 19 SHSFRCCICLDLLY--KPIV--LSCGHISCFWCVHRSMNGL-----RESHCPICRRPYN 68 (404)
Q Consensus 19 ~~~l~C~IC~~~l~--~Pv~--l~CGH~fC~~Ci~~~~~~~-----~~~~CP~CR~~~~ 68 (404)
...+.|.||.+.+. .||- .+|=|+|...||..|.+.. ....||.|+....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 46689999999874 4653 3588999999999997642 4568999986544
No 220
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=51.15 E-value=7.1 Score=33.50 Aligned_cols=32 Identities=28% Similarity=0.591 Sum_probs=25.3
Q ss_pred CcccccccccccC--cEE-ccCC------CcccHHHHHHhH
Q 039128 21 SFRCCICLDLLYK--PIV-LSCG------HISCFWCVHRSM 52 (404)
Q Consensus 21 ~l~C~IC~~~l~~--Pv~-l~CG------H~fC~~Ci~~~~ 52 (404)
...|.||++.+.+ -|+ ++|| |.||..|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 6789999998876 443 5565 679999999984
No 221
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.08 E-value=9.6 Score=39.50 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=30.3
Q ss_pred CCCcccccccccccC-cEEccCCCcccHHHHHHhHcC
Q 039128 19 SHSFRCCICLDLLYK-PIVLSCGHISCFWCVHRSMNG 54 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~-Pv~l~CGH~fC~~Ci~~~~~~ 54 (404)
.....|.||.+.+.. .+.+.|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 456899999998874 666789999999999988773
No 222
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=49.63 E-value=1.3 Score=31.23 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=23.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHH-HHHHHHHHHhhc
Q 039128 312 VGCDSCGTGQFCLALKLYLTI-TWMLLYAAYRLL 344 (404)
Q Consensus 312 v~C~~C~~~p~~~a~k~~~~~-~~~~~~~~~~~~ 344 (404)
|.|+.|++.||...--+|+.| .+.+|++|+..-
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~ 34 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDSG 34 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhCC
Confidence 568999888887544445555 378899998854
No 223
>PHA02862 5L protein; Provisional
Probab=49.51 E-value=14 Score=32.05 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=32.4
Q ss_pred eeeeecccCccCceecccCC-----cchHHhhcccc--cccCCCccCCccc
Q 039128 196 VLCTACKQLLIHPVVLNCGH-----VYCETCIITPT--VQQLKCEVCQCLN 239 (404)
Q Consensus 196 ~~C~iC~~~~~~p~~l~CgH-----~fC~~Cl~~~~--~~~~~CP~Cr~~~ 239 (404)
-.|-||.+.-.+. .-||.. -..+.|+.+|. .....|+.|+.++
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 3699999876544 467653 46789999995 4667899999986
No 224
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.45 E-value=39 Score=32.12 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=35.5
Q ss_pred ccceeeeecccCccCc----eecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHP----VVLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p----~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
...+.|||-.-.+..- ..-.|||+|-..-+.+.. ...|++|...+..
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccc
Confidence 5678899976655543 344899999999888764 4569999998854
No 225
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=49.05 E-value=15 Score=39.90 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=41.4
Q ss_pred cccccceeeeecccCccCce-ecccCCcchHHhhccc----ccccCCCccCCcccCCCCCcchHHHHHHHH
Q 039128 190 QISIVDVLCTACKQLLIHPV-VLNCGHVYCETCIITP----TVQQLKCEVCQCLNPNGFPKVCLELDQFLE 255 (404)
Q Consensus 190 ~~~~~~~~C~iC~~~~~~p~-~l~CgH~fC~~Cl~~~----~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~ 255 (404)
-...-.+.|+|+..-+.-|. ...|.|.=|.+=+.-. ....+.||+|.+.+....+.+...+.++|.
T Consensus 301 t~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~ 371 (636)
T KOG2169|consen 301 TSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQ 371 (636)
T ss_pred ccceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHh
Confidence 34455678999987776664 3456665554433221 246789999998875555556555555553
No 226
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=48.19 E-value=9.4 Score=36.28 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=37.5
Q ss_pred CcccccccccccCcEE-ccCCCcccHHHHHHhHcCCCCCCCCCCCcC
Q 039128 21 SFRCCICLDLLYKPIV-LSCGHISCFWCVHRSMNGLRESHCPICRRP 66 (404)
Q Consensus 21 ~l~C~IC~~~l~~Pv~-l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~ 66 (404)
.++|||=...+..|++ ..|||+|=+.-|...+....+..||+=...
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 4889998888888987 569999999999998876556779875554
No 227
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=48.10 E-value=6.9 Score=22.93 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=10.5
Q ss_pred hHHhhcccccccCCCccCCcc
Q 039128 218 CETCIITPTVQQLKCEVCQCL 238 (404)
Q Consensus 218 C~~Cl~~~~~~~~~CP~Cr~~ 238 (404)
|..|=........-||.|..+
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 444444444444556666543
No 228
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.21 E-value=8.4 Score=37.07 Aligned_cols=34 Identities=24% Similarity=0.596 Sum_probs=28.5
Q ss_pred ccceeeeecccCccCceeccc----CCcchHHhhcccc
Q 039128 193 IVDVLCTACKQLLIHPVVLNC----GHVYCETCIITPT 226 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~C----gH~fC~~Cl~~~~ 226 (404)
...+.|.+|.+-|.|.-.+.| .|-||..|-.+.+
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResI 303 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESI 303 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHH
Confidence 355899999999999877766 6999999988864
No 229
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=44.64 E-value=19 Score=35.56 Aligned_cols=47 Identities=23% Similarity=0.404 Sum_probs=37.1
Q ss_pred eeeeecccCcc--Cceec--ccCCcchHHhhcccccccCCCccCCcccCCC
Q 039128 196 VLCTACKQLLI--HPVVL--NCGHVYCETCIITPTVQQLKCEVCQCLNPNG 242 (404)
Q Consensus 196 ~~C~iC~~~~~--~p~~l--~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 242 (404)
-.|++|.+.+. +-..+ +||+..|..|+........+||.||++...+
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccC
Confidence 46999998663 32333 6899999999999988999999999876443
No 230
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=44.15 E-value=1.5 Score=30.01 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=25.3
Q ss_pred cccccCCCCCCcHHHHHHHHHHHH-HHHHHHHHHhhc
Q 039128 309 HVGVGCDSCGTGQFCLALKLYLTI-TWMLLYAAYRLL 344 (404)
Q Consensus 309 h~~v~C~~C~~~p~~~a~k~~~~~-~~~~~~~~~~~~ 344 (404)
+..+.|+.|+. ||....=+|..| .+.+|.+|+..-
T Consensus 2 ~~~~~C~~C~~-~i~g~ry~C~~C~d~dlC~~Cf~~~ 37 (44)
T smart00291 2 HHSYSCDTCGK-PIVGVRYHCLVCPDYDLCQSCFAKG 37 (44)
T ss_pred CCCcCCCCCCC-CCcCCEEECCCCCCccchHHHHhCc
Confidence 45678999998 776554455566 588899998754
No 231
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=43.58 E-value=11 Score=36.32 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=32.6
Q ss_pred ccceeeeecccCccC-c--------eecccCCcchHHhhcc-c----------ccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIH-P--------VVLNCGHVYCETCIIT-P----------TVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~-p--------~~l~CgH~fC~~Cl~~-~----------~~~~~~CP~Cr~~~~~ 241 (404)
.....|++|.+.+.. | -+|+|-..+|..=+.+ | .+..+.||.|++.|.+
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 455678888776642 2 2356766677666655 2 2457899999998866
No 232
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=43.39 E-value=16 Score=36.65 Aligned_cols=30 Identities=23% Similarity=0.716 Sum_probs=22.6
Q ss_pred CCCcccHHHHHHhHcCC-----------CCCCCCCCCcCCC
Q 039128 39 CGHISCFWCVHRSMNGL-----------RESHCPICRRPYN 68 (404)
Q Consensus 39 CGH~fC~~Ci~~~~~~~-----------~~~~CP~CR~~~~ 68 (404)
|.-..|.+|+-+|+... ++..||.||+.+-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 45567999999988632 4567999999864
No 233
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=43.32 E-value=15 Score=29.41 Aligned_cols=35 Identities=31% Similarity=0.736 Sum_probs=27.8
Q ss_pred eeeeecccCccCceecccCCcchHHhhcccccccCCCccCCccc
Q 039128 196 VLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 196 ~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
-.|.||...+..+ ||.||..|.-. ...|..|.+.+
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAYk----kGiCamCGKki 79 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAYK----KGICAMCGKKI 79 (90)
T ss_pred ccccccccccccC-----CCccChhhhcc----cCcccccCCee
Confidence 4699998877665 89999999643 34799999986
No 234
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=41.71 E-value=6.5 Score=38.14 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=32.5
Q ss_pred CCcccc-----ccCCCCCCcHHHHHHHHHHHHH-HHHHHHHHhhc
Q 039128 306 SKVHVG-----VGCDSCGTGQFCLALKLYLTIT-WMLLYAAYRLL 344 (404)
Q Consensus 306 ~~~h~~-----v~C~~C~~~p~~~a~k~~~~~~-~~~~~~~~~~~ 344 (404)
...|.. +.||.|+..||.-+.=+|.-|. +.+|+.|+...
T Consensus 142 ~~~H~~~~~~~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 142 GEMHPNISKLSVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred cccCCCcccccccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 455666 9999999999988887888665 88999999885
No 235
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.04 E-value=15 Score=35.46 Aligned_cols=30 Identities=27% Similarity=0.784 Sum_probs=23.3
Q ss_pred CCCcccHHHHHHhHcCC-----------CCCCCCCCCcCCC
Q 039128 39 CGHISCFWCVHRSMNGL-----------RESHCPICRRPYN 68 (404)
Q Consensus 39 CGH~fC~~Ci~~~~~~~-----------~~~~CP~CR~~~~ 68 (404)
|.-..|.+|+.+|+... ++..||.||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 56678999999887632 4567999999875
No 236
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.69 E-value=19 Score=22.88 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=8.2
Q ss_pred ccCCCccCCcc
Q 039128 228 QQLKCEVCQCL 238 (404)
Q Consensus 228 ~~~~CP~Cr~~ 238 (404)
....||+|+..
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 45689999764
No 237
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.73 E-value=24 Score=26.83 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=19.8
Q ss_pred CCcchHHhhcccccccCCCccCCcccCC
Q 039128 214 GHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 214 gH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
-|+||..|....+. ..||.|...+-.
T Consensus 28 EcTFCadCae~~l~--g~CPnCGGelv~ 53 (84)
T COG3813 28 ECTFCADCAENRLH--GLCPNCGGELVA 53 (84)
T ss_pred eeehhHhHHHHhhc--CcCCCCCchhhc
Confidence 47899999986544 459999987744
No 238
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.09 E-value=19 Score=39.92 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=29.9
Q ss_pred cccCCCcccccccccc-cCcE-EccCCCcccHHHHHHhHc
Q 039128 16 EKISHSFRCCICLDLL-YKPI-VLSCGHISCFWCVHRSMN 53 (404)
Q Consensus 16 ~~l~~~l~C~IC~~~l-~~Pv-~l~CGH~fC~~Ci~~~~~ 53 (404)
..+.....|.+|...+ ..|. +.+|||.|++.|+.+...
T Consensus 812 ~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 812 RVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 3445678899999865 4664 578999999999988765
No 239
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=36.59 E-value=6 Score=39.06 Aligned_cols=58 Identities=29% Similarity=0.463 Sum_probs=35.7
Q ss_pred CccccccCCCCCCcHHHHHHHHHHHHH-HHHHHHHHhhc-CccccccCCCC-----ccccccccc
Q 039128 307 KVHVGVGCDSCGTGQFCLALKLYLTIT-WMLLYAAYRLL-DRDEDKICHPS-----FVDFSKRFE 364 (404)
Q Consensus 307 ~~h~~v~C~~C~~~p~~~a~k~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~ 364 (404)
..|.+|.||+||--...-=-=+|+.|. +.+|.+||.+= .-.....+||. .+||-.+|-
T Consensus 4 ~rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~dfeL~f~ 68 (381)
T KOG1280|consen 4 SRHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRVDFELYFG 68 (381)
T ss_pred CCcCCceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeeccceeeEec
Confidence 358899999998543321122344554 88999999763 22345566764 455555554
No 240
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=36.32 E-value=31 Score=24.86 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=23.6
Q ss_pred Ccccccccccc--cCcEE-cc-CCCcccHHHHHH
Q 039128 21 SFRCCICLDLL--YKPIV-LS-CGHISCFWCVHR 50 (404)
Q Consensus 21 ~l~C~IC~~~l--~~Pv~-l~-CGH~fC~~Ci~~ 50 (404)
.-.|++|.+.| .+.++ .+ ||-.|.++|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 46799999999 55544 44 999999999754
No 241
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=36.30 E-value=34 Score=37.78 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=39.2
Q ss_pred CCccccccccc--ccCcEEccCCCc-----ccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 20 HSFRCCICLDL--LYKPIVLSCGHI-----SCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 20 ~~l~C~IC~~~--l~~Pv~l~CGH~-----fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
+.-.|.||..- -.+|..-||..+ .+++|+.+|+.-.++.+|-+|..++.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 44899999853 456887777543 58999999999888899999998874
No 242
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=36.19 E-value=39 Score=26.18 Aligned_cols=47 Identities=26% Similarity=0.499 Sum_probs=19.8
Q ss_pred Cccccccccccc-----CcEE--ccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 21 SFRCCICLDLLY-----KPIV--LSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 21 ~l~C~IC~~~l~-----~Pv~--l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.-.|.||.+-+- ++.+ ..|+-..|+.|..--.+ .+...||.|+..+.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk-eg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK-EGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH-TS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh-cCcccccccCCCcc
Confidence 457999998652 3433 35888999999865333 46778999998775
No 243
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=33.90 E-value=30 Score=30.84 Aligned_cols=69 Identities=14% Similarity=0.314 Sum_probs=45.5
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCCccc-ccccccccccccCcccccceeeehhhhhccc
Q 039128 311 GVGCDSCGTGQFCLALKLYLTITWMLLYAAYRLLDRDEDKICHPSFVD-FSKRFEDDEGMAGKSSRFDSLIVETQAMHGG 389 (404)
Q Consensus 311 ~v~C~~C~~~p~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (404)
-++|..|+| ..|.+....+..|-+||... |+.++| |+.-.-.++--.||..- +.+++
T Consensus 74 ~l~C~~C~~-----Tfk~f~~~g~fGCaeCY~tf--------~~~i~pi~~rvq~g~~~H~GK~P~---------~~~~~ 131 (176)
T COG3880 74 LLGCHNCGM-----TFKEFIQSGLFGCAECYKTF--------ESQISPIITRVQGGYVEHVGKVPK---------RIGRK 131 (176)
T ss_pred HhcCccccc-----cHHHHHHhcccchHHHHHHH--------HHHhhHHHHHhhCCceeecCcCcc---------ccccc
Confidence 588999986 47889999999999999998 444444 22222233333344321 25677
Q ss_pred chhhhhHHHHHH
Q 039128 390 EHVSQRLFAVQE 401 (404)
Q Consensus 390 ~~~~~~~~~~~~ 401 (404)
.++-.++.+++|
T Consensus 132 i~~~~~I~~L~e 143 (176)
T COG3880 132 INPKRKIIALKE 143 (176)
T ss_pred ccHHHHHHHHHH
Confidence 777777777665
No 244
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=32.65 E-value=41 Score=36.59 Aligned_cols=54 Identities=19% Similarity=0.423 Sum_probs=39.5
Q ss_pred ccccCCCcccccccccccCcEE-ccCCCcccHHHHHHhHc--CCCCCCCCCCCcCCC
Q 039128 15 PEKISHSFRCCICLDLLYKPIV-LSCGHISCFWCVHRSMN--GLRESHCPICRRPYN 68 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~-l~CGH~fC~~Ci~~~~~--~~~~~~CP~CR~~~~ 68 (404)
...+.-.|.|+|+.-.+.-|+. ..|.|.-|+.-..-... +..+..||+|.+...
T Consensus 300 tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 300 TTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred eccceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCcccc
Confidence 4556778999999988877765 67999988887643322 225677999988664
No 245
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.90 E-value=31 Score=37.50 Aligned_cols=46 Identities=37% Similarity=0.615 Sum_probs=36.8
Q ss_pred ccccccccccCcEEccCCC-cccHHHHHHhHcCCC----CCCCCCCCcCCC
Q 039128 23 RCCICLDLLYKPIVLSCGH-ISCFWCVHRSMNGLR----ESHCPICRRPYN 68 (404)
Q Consensus 23 ~C~IC~~~l~~Pv~l~CGH-~fC~~Ci~~~~~~~~----~~~CP~CR~~~~ 68 (404)
.|+||-.-+.-+..-+||| ..|..|..+...... ...||+||..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5899998888888889999 899999988765444 455799988654
No 246
>PF15616 TerY-C: TerY-C metal binding domain
Probab=31.87 E-value=29 Score=29.79 Aligned_cols=46 Identities=24% Similarity=0.518 Sum_probs=33.9
Q ss_pred ccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 15 PEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
..+|...-.||-|...+.-. +..||++||. .......||-|.+...
T Consensus 71 tseL~g~PgCP~CGn~~~fa-~C~CGkl~Ci-------~g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 71 TSELIGAPGCPHCGNQYAFA-VCGCGKLFCI-------DGEGEVTCPWCGNEGS 116 (131)
T ss_pred hHHhcCCCCCCCCcChhcEE-EecCCCEEEe-------CCCCCEECCCCCCeee
Confidence 35556668999999976554 3489999994 3446678999988654
No 247
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.68 E-value=41 Score=38.15 Aligned_cols=63 Identities=22% Similarity=0.416 Sum_probs=40.8
Q ss_pred ccceeeeecccCccCceecccCC-----cchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHHHh
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGH-----VYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEEQF 258 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH-----~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~ 258 (404)
.....|+-|.........-.||. .||..|-.. .....||.|....... ....+.+.+++.+-+
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~--~~~y~CPKCG~El~~~-s~~~i~l~~~~~~A~ 691 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE--VEEDECEKCGREPTPY-SKRKIDLKELYDRAL 691 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc--CCCCcCCCCCCCCCcc-ceEEecHHHHHHHHH
Confidence 34557999998764444446884 599999443 3446799999987432 345555666664433
No 248
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.37 E-value=17 Score=40.26 Aligned_cols=35 Identities=31% Similarity=0.739 Sum_probs=27.0
Q ss_pred ccccceeeeecccCc-cCc-eecccCCcchHHhhccc
Q 039128 191 ISIVDVLCTACKQLL-IHP-VVLNCGHVYCETCIITP 225 (404)
Q Consensus 191 ~~~~~~~C~iC~~~~-~~p-~~l~CgH~fC~~Cl~~~ 225 (404)
..+..-.|.+|...| ..| .+.+|||.|.+.|+.+.
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 345556799998755 456 46699999999999875
No 249
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=30.54 E-value=29 Score=24.46 Aligned_cols=29 Identities=24% Similarity=0.739 Sum_probs=20.7
Q ss_pred eeeecccCccCc----eecccCCcchHHhhccc
Q 039128 197 LCTACKQLLIHP----VVLNCGHVYCETCIITP 225 (404)
Q Consensus 197 ~C~iC~~~~~~p----~~l~CgH~fC~~Cl~~~ 225 (404)
.|.+|...|.-- .--.||+.||..|....
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 588887766431 22369999999998775
No 250
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=30.32 E-value=21 Score=21.36 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=4.5
Q ss_pred ccCCCccCCc
Q 039128 228 QQLKCEVCQC 237 (404)
Q Consensus 228 ~~~~CP~Cr~ 237 (404)
....||.|..
T Consensus 15 ~~~fC~~CG~ 24 (26)
T PF13248_consen 15 DAKFCPNCGA 24 (26)
T ss_pred ccccChhhCC
Confidence 3344555543
No 251
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=29.91 E-value=28 Score=34.97 Aligned_cols=26 Identities=15% Similarity=0.375 Sum_probs=18.9
Q ss_pred CcchHHhhcccc-------------cccCCCccCCcccC
Q 039128 215 HVYCETCIITPT-------------VQQLKCEVCQCLNP 240 (404)
Q Consensus 215 H~fC~~Cl~~~~-------------~~~~~CP~Cr~~~~ 240 (404)
-..|.+|+.+|+ .+.-.||+||+.+.
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 345778998862 34568999999863
No 252
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.33 E-value=25 Score=31.57 Aligned_cols=45 Identities=18% Similarity=0.417 Sum_probs=30.9
Q ss_pred eeeeecccCccCce-------ecccCCcchHHhhccccc------cc-----CCCccCCcccC
Q 039128 196 VLCTACKQLLIHPV-------VLNCGHVYCETCIITPTV------QQ-----LKCEVCQCLNP 240 (404)
Q Consensus 196 ~~C~iC~~~~~~p~-------~l~CgH~fC~~Cl~~~~~------~~-----~~CP~Cr~~~~ 240 (404)
..|.||+-+--+-+ -+.||..|.+-|+..|+. ++ ..||.|..++.
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 34777876543322 236999999999999842 11 36999988764
No 253
>PLN02189 cellulose synthase
Probab=29.20 E-value=35 Score=38.89 Aligned_cols=46 Identities=26% Similarity=0.557 Sum_probs=35.5
Q ss_pred ccccccccccc-----Cc-EEcc-CCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 22 FRCCICLDLLY-----KP-IVLS-CGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 22 l~C~IC~~~l~-----~P-v~l~-CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
-.|.||.+.+- +| |... ||--.|+.|. ++-++.++..||.|+..+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence 48999999753 23 3333 8999999999 5566667888999999986
No 254
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=29.17 E-value=57 Score=23.64 Aligned_cols=45 Identities=27% Similarity=0.518 Sum_probs=28.6
Q ss_pred ccccccccccC--cEEccCC--CcccHHHHHHhHcCCCCCCCCCCCcCCCCCC
Q 039128 23 RCCICLDLLYK--PIVLSCG--HISCFWCVHRSMNGLRESHCPICRRPYNHFP 71 (404)
Q Consensus 23 ~C~IC~~~l~~--Pv~l~CG--H~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~ 71 (404)
.|-.|-..|.. +-..-|. .+||..|....+. ..||-|.-.+..+|
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~----~~CPNCgGelv~RP 55 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN----GVCPNCGGELVRRP 55 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc----CcCcCCCCccccCC
Confidence 45556655532 1122243 4899999988654 46999988876554
No 255
>PF06869 DUF1258: Protein of unknown function (DUF1258); InterPro: IPR009667 This family represents a conserved region approximately 260 residues long within a number of hypothetical proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that this family contains a number of conserved cysteine and histidine residues.
Probab=28.35 E-value=52 Score=31.40 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=38.5
Q ss_pred CCcchHHhhcccccccCCCccC--CcccCCCCCcchHHHHHHHHHHhHHHHHHHHHHHhcc
Q 039128 214 GHVYCETCIITPTVQQLKCEVC--QCLNPNGFPKVCLELDQFLEEQFSKEYALRRDVILNH 272 (404)
Q Consensus 214 gH~fC~~Cl~~~~~~~~~CP~C--r~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~ 272 (404)
-|.||-.|.. .......|-.| .....--.......|.++++.|+++...-|++....+
T Consensus 17 ~h~~CN~CG~-~~~~~~kC~~c~~~~vakfvRig~~~QL~dLV~~y~~~Il~ir~~Lk~Gr 76 (258)
T PF06869_consen 17 THFICNSCGK-VVESNEKCSCCGCGPVAKFVRIGGFSQLQDLVEQYLEDILEIREKLKSGR 76 (258)
T ss_pred eehhhhhhhh-hhccCceeeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4889999987 44445567555 3322111224557899999999999988887766543
No 256
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=28.13 E-value=37 Score=27.89 Aligned_cols=25 Identities=20% Similarity=0.603 Sum_probs=19.6
Q ss_pred CCcchHHhhccc---------ccccCCCccCCcc
Q 039128 214 GHVYCETCIITP---------TVQQLKCEVCQCL 238 (404)
Q Consensus 214 gH~fC~~Cl~~~---------~~~~~~CP~Cr~~ 238 (404)
.-.||..||... ....+.||.||..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 667999999774 2456889999884
No 257
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=27.85 E-value=14 Score=27.39 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=15.9
Q ss_pred cceeeeecccCccCce----ecccCCcchHHhhccc
Q 039128 194 VDVLCTACKQLLIHPV----VLNCGHVYCETCIITP 225 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~----~l~CgH~fC~~Cl~~~ 225 (404)
+...|.+|...|.--. --.||+.||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 4457999999884211 1159999999998764
No 258
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=27.43 E-value=40 Score=22.41 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=16.2
Q ss_pred cccccccccC-cEEcc-CCCcccH
Q 039128 24 CCICLDLLYK-PIVLS-CGHISCF 45 (404)
Q Consensus 24 C~IC~~~l~~-Pv~l~-CGH~fC~ 45 (404)
|.+|.....- |+... |+.+||.
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~ 24 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCG 24 (39)
T ss_pred CcccCCcccccCeECCccCCcccc
Confidence 5567765554 88877 9999986
No 259
>PLN02436 cellulose synthase A
Probab=27.26 E-value=44 Score=38.27 Aligned_cols=46 Identities=26% Similarity=0.589 Sum_probs=35.4
Q ss_pred ccccccccccc-----CcE-Ec-cCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 22 FRCCICLDLLY-----KPI-VL-SCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 22 l~C~IC~~~l~-----~Pv-~l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
-.|.||.+.+- +|. .. .||--.|+.|. ++-+..++..||.|+..+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence 38999998752 343 33 49999999999 5556567788999999886
No 260
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.24 E-value=62 Score=33.50 Aligned_cols=47 Identities=15% Similarity=0.507 Sum_probs=34.6
Q ss_pred cccCCCcccccc-cccccCcEEc--cCCCcccHHHHHHhHcCCCCCCCCCCCc
Q 039128 16 EKISHSFRCCIC-LDLLYKPIVL--SCGHISCFWCVHRSMNGLRESHCPICRR 65 (404)
Q Consensus 16 ~~l~~~l~C~IC-~~~l~~Pv~l--~CGH~fC~~Ci~~~~~~~~~~~CP~CR~ 65 (404)
-.+.+.+.|++| .+.|.+..++ -|.-+||..||...+... .++.|.+
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~---~~~~c~~ 263 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISK---SMCVCGA 263 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccc---cCCcchh
Confidence 445788999999 7788777666 388999999998876643 3555543
No 261
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=27.11 E-value=34 Score=25.64 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=8.8
Q ss_pred cccHHHHHHhHc
Q 039128 42 ISCFWCVHRSMN 53 (404)
Q Consensus 42 ~fC~~Ci~~~~~ 53 (404)
-||+.|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999987
No 262
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=26.96 E-value=5.6 Score=29.39 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=4.3
Q ss_pred cccCCCCCCcHH
Q 039128 311 GVGCDSCGTGQF 322 (404)
Q Consensus 311 ~v~C~~C~~~p~ 322 (404)
++.|..|+.|-+
T Consensus 48 g~KC~~C~SYNT 59 (61)
T PF14599_consen 48 GHKCSHCGSYNT 59 (61)
T ss_dssp ----TTTS---E
T ss_pred hhcCCCCCCccc
Confidence 899999998754
No 263
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=26.66 E-value=39 Score=22.06 Aligned_cols=13 Identities=23% Similarity=0.518 Sum_probs=8.8
Q ss_pred cccccccccccCc
Q 039128 22 FRCCICLDLLYKP 34 (404)
Q Consensus 22 l~C~IC~~~l~~P 34 (404)
++||-|...|.-|
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 5688888776543
No 264
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=25.91 E-value=69 Score=36.23 Aligned_cols=65 Identities=14% Similarity=0.026 Sum_probs=53.5
Q ss_pred ceeeeecccCccCceecc-cCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHHHhH
Q 039128 195 DVLCTACKQLLIHPVVLN-CGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEEQFS 259 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~~ 259 (404)
++.=|+-..+..+||++| =|++.++.=+.+++.....=|.||.++.......|..|+.-|+.+..
T Consensus 870 ef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ 935 (943)
T KOG2042|consen 870 EFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPNEELKAKIRCWIK 935 (943)
T ss_pred hhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCCHHHHHHHHHHHH
Confidence 344466677888999998 89999999999987777777999999988777888889888866653
No 266
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.73 E-value=41 Score=27.83 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=9.4
Q ss_pred cCCCcccccccccccC
Q 039128 18 ISHSFRCCICLDLLYK 33 (404)
Q Consensus 18 l~~~l~C~IC~~~l~~ 33 (404)
|.-...|+-|..-|++
T Consensus 6 lGtKR~Cp~CG~kFYD 21 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFYD 21 (108)
T ss_pred cCCcccCCCCcchhcc
Confidence 4445567666666653
No 267
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=25.61 E-value=21 Score=24.63 Aligned_cols=40 Identities=23% Similarity=0.581 Sum_probs=25.8
Q ss_pred eeeecccCccCceec---ccCCcchHHhhcccc------cccCCCccCC
Q 039128 197 LCTACKQLLIHPVVL---NCGHVYCETCIITPT------VQQLKCEVCQ 236 (404)
Q Consensus 197 ~C~iC~~~~~~p~~l---~CgH~fC~~Cl~~~~------~~~~~CP~Cr 236 (404)
.|.||.....+-.++ .|+..|...|+.... ...+.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 377787733332233 578888888887752 2367888885
No 268
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=25.52 E-value=5.6 Score=27.35 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=20.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHH-HHHHHHHHhhcC
Q 039128 313 GCDSCGTGQFCLALKLYLTIT-WMLLYAAYRLLD 345 (404)
Q Consensus 313 ~C~~C~~~p~~~a~k~~~~~~-~~~~~~~~~~~~ 345 (404)
.|+.|+. ||....=+|..|. +.+|..|+..-.
T Consensus 2 ~C~~C~~-~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 2 SCDGCLK-PIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCcCCCC-CCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 3777776 5554333344555 788999998664
No 269
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=25.43 E-value=50 Score=37.82 Aligned_cols=46 Identities=26% Similarity=0.546 Sum_probs=35.6
Q ss_pred ccccccccccc-----CcE-Ec-cCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 22 FRCCICLDLLY-----KPI-VL-SCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 22 l~C~IC~~~l~-----~Pv-~l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
-.|.||.+.+- +|. .. .||--.|+.|. ++-+..++..||.|+..+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 38999998753 343 23 49999999999 5566667888999999886
No 270
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=24.78 E-value=67 Score=29.83 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=30.9
Q ss_pred ccceeeeecccCccCceecccC-------CcchHHh--hcccccccCCCccCCcccCCC-CCcchH
Q 039128 193 IVDVLCTACKQLLIHPVVLNCG-------HVYCETC--IITPTVQQLKCEVCQCLNPNG-FPKVCL 248 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~Cg-------H~fC~~C--l~~~~~~~~~CP~Cr~~~~~~-~~~~~~ 248 (404)
.....||+|...|....+.+=+ --||..= +....-....||.|....... +..+..
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F~~l~~ 68 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDFEKLSP 68 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccccccccCCH
Confidence 3567999999999865433211 1111100 222233456899999876443 444443
No 271
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.46 E-value=29 Score=21.00 Aligned_cols=8 Identities=25% Similarity=0.866 Sum_probs=3.4
Q ss_pred eeecccCc
Q 039128 198 CTACKQLL 205 (404)
Q Consensus 198 C~iC~~~~ 205 (404)
||.|....
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 44444433
No 272
>PF14353 CpXC: CpXC protein
Probab=24.22 E-value=52 Score=27.61 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=24.7
Q ss_pred CcccccccccccCcEEccCCCcccHHHHHHhHcCC-CCCCCCCCCcCCC
Q 039128 21 SFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGL-RESHCPICRRPYN 68 (404)
Q Consensus 21 ~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~-~~~~CP~CR~~~~ 68 (404)
+++||.|...+...+-+.--=..=..=....+... ....||.|.....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 36788888877544332211111122222333211 3467999998775
No 273
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=24.21 E-value=25 Score=35.53 Aligned_cols=48 Identities=27% Similarity=0.607 Sum_probs=0.0
Q ss_pred CcccccccccccC-------------c-EEccCCCcccHHHHHHhHc-CCCCCCCCCCCcCCC
Q 039128 21 SFRCCICLDLLYK-------------P-IVLSCGHISCFWCVHRSMN-GLRESHCPICRRPYN 68 (404)
Q Consensus 21 ~l~C~IC~~~l~~-------------P-v~l~CGH~fC~~Ci~~~~~-~~~~~~CP~CR~~~~ 68 (404)
-.+||+=+..|.- | |.+.|||++-..=+..--. ......||+||..-.
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeecccccccccccccccCCCccccCC
Confidence 3789988877643 3 4478999876532211001 113567999987543
No 274
>PLN02195 cellulose synthase A
Probab=24.01 E-value=60 Score=36.84 Aligned_cols=46 Identities=22% Similarity=0.423 Sum_probs=35.7
Q ss_pred ccccccccccc-----CcEE--ccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 22 FRCCICLDLLY-----KPIV--LSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 22 l~C~IC~~~l~-----~Pv~--l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
-.|.||.+.+. +|.+ -.||--.|+.|. ++-++.++..||.|+..+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCccc
Confidence 47999998653 3433 359999999999 5566667888999999887
No 275
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.59 E-value=33 Score=33.29 Aligned_cols=27 Identities=19% Similarity=0.641 Sum_probs=20.7
Q ss_pred cCCcchHHhhccc-------------ccccCCCccCCccc
Q 039128 213 CGHVYCETCIITP-------------TVQQLKCEVCQCLN 239 (404)
Q Consensus 213 CgH~fC~~Cl~~~-------------~~~~~~CP~Cr~~~ 239 (404)
|....|.+|+.++ ..+.-.||.||+.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 5566788999885 24567899999976
No 276
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.55 E-value=62 Score=26.95 Aligned_cols=41 Identities=22% Similarity=0.549 Sum_probs=29.4
Q ss_pred eeeeecccCccCce--------------ecccCCcchHHhhcccccccCCCccCC
Q 039128 196 VLCTACKQLLIHPV--------------VLNCGHVYCETCIITPTVQQLKCEVCQ 236 (404)
Q Consensus 196 ~~C~iC~~~~~~p~--------------~l~CgH~fC~~Cl~~~~~~~~~CP~Cr 236 (404)
..|..|...|.++. -..|.+.||.+|=.=..+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 35888988876542 235899999998655555667799885
No 277
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=23.30 E-value=48 Score=30.72 Aligned_cols=45 Identities=24% Similarity=0.507 Sum_probs=35.5
Q ss_pred CcccccccccccCcEEc-cCCCcccHHHHHHhHcCCCCCCCCCCCcCC
Q 039128 21 SFRCCICLDLLYKPIVL-SCGHISCFWCVHRSMNGLRESHCPICRRPY 67 (404)
Q Consensus 21 ~l~C~IC~~~l~~Pv~l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~ 67 (404)
.-.|.+|..++..-+.. +||=-|...|+..++. ....||.|.--.
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q--~~~~cphc~d~w 226 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQ--RRDICPHCGDLW 226 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhc--ccCcCCchhccc
Confidence 35799999998877665 5888899999999887 366799995433
No 278
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=22.99 E-value=31 Score=32.90 Aligned_cols=44 Identities=27% Similarity=0.582 Sum_probs=34.7
Q ss_pred ceeeeecccCccCceec-ccCCcchHHhhcccccc--cCCCccCCcc
Q 039128 195 DVLCTACKQLLIHPVVL-NCGHVYCETCIITPTVQ--QLKCEVCQCL 238 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l-~CgH~fC~~Cl~~~~~~--~~~CP~Cr~~ 238 (404)
++.||+=...+.+|++- .|||+|=++=+...... ...||+=.-.
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 46799998999999765 79999999999887654 6778864443
No 279
>COG4640 Predicted membrane protein [Function unknown]
Probab=22.89 E-value=51 Score=33.42 Aligned_cols=39 Identities=10% Similarity=0.334 Sum_probs=27.2
Q ss_pred cchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHH
Q 039128 216 VYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFL 254 (404)
Q Consensus 216 ~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l 254 (404)
.||..|-..-.+....||.|+.++......-|..+.+++
T Consensus 2 ~fC~kcG~qk~Ed~~qC~qCG~~~t~~~sqan~~tn~i~ 40 (465)
T COG4640 2 KFCPKCGSQKAEDDVQCTQCGHKFTSRQSQANKSTNEII 40 (465)
T ss_pred CcccccccccccccccccccCCcCCchhhhhhHHHHHHH
Confidence 478888755556666699999988665555666666655
No 280
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=22.83 E-value=27 Score=21.91 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=12.8
Q ss_pred CcchHHhhccc----ccccCCCccCCcc
Q 039128 215 HVYCETCIITP----TVQQLKCEVCQCL 238 (404)
Q Consensus 215 H~fC~~Cl~~~----~~~~~~CP~Cr~~ 238 (404)
|.||..|=... ......||.|+..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-E
T ss_pred CcccCcCCccccCCCCcCEeECCCCcCE
Confidence 67888887664 2345678888653
No 281
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.82 E-value=39 Score=28.74 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=12.9
Q ss_pred cccccccCcEEccCCCcccHH
Q 039128 26 ICLDLLYKPIVLSCGHISCFW 46 (404)
Q Consensus 26 IC~~~l~~Pv~l~CGH~fC~~ 46 (404)
||+..-..-+...|||.||..
T Consensus 62 i~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEecccccEEEEeccccccCh
Confidence 344433343457899999864
No 282
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=22.50 E-value=34 Score=33.52 Aligned_cols=45 Identities=38% Similarity=0.809 Sum_probs=27.1
Q ss_pred CcccccccccccC-------------c-EEccCCCccc--HHHHHHhHcCCCCCCCCCCCcC
Q 039128 21 SFRCCICLDLLYK-------------P-IVLSCGHISC--FWCVHRSMNGLRESHCPICRRP 66 (404)
Q Consensus 21 ~l~C~IC~~~l~~-------------P-v~l~CGH~fC--~~Ci~~~~~~~~~~~CP~CR~~ 66 (404)
--+||+=++.|.- | |.+.|||+-- -|=..+ -..++...||+||..
T Consensus 290 RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H~WG~~e-~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 290 RPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYHNWGVRE-NTGQRERECPMCRVV 350 (429)
T ss_pred CCCCCcccceeecccccccccccccCCeEEEecccccccccccccc-ccCcccCcCCeeeee
Confidence 3689988887643 3 4579999743 222111 112245679999774
No 283
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.76 E-value=23 Score=34.47 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=22.4
Q ss_pred cceeeeecccCccCceeccc-----CCcchHHhhcccccccCCCccCCccc
Q 039128 194 VDVLCTACKQLLIHPVVLNC-----GHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~~l~C-----gH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
..-.||||...-.-.++..= -+.+|.-|-..|.-....||.|...-
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTD 221 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---S
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCC
Confidence 34589999976543333322 36789999999977778899997753
No 284
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=21.43 E-value=52 Score=31.41 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=17.9
Q ss_pred Cccccccccccc---CcEEccCCCccc
Q 039128 21 SFRCCICLDLLY---KPIVLSCGHISC 44 (404)
Q Consensus 21 ~l~C~IC~~~l~---~Pv~l~CGH~fC 44 (404)
.+.||+|...|. .....+.||+|=
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd 28 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFD 28 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCc
Confidence 378999999884 345566789883
No 285
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=21.34 E-value=51 Score=22.20 Aligned_cols=24 Identities=25% Similarity=0.663 Sum_probs=13.5
Q ss_pred ccc--ccccccCcEEcc-CCCcccHHH
Q 039128 24 CCI--CLDLLYKPIVLS-CGHISCFWC 47 (404)
Q Consensus 24 C~I--C~~~l~~Pv~l~-CGH~fC~~C 47 (404)
|.+ |......|+... ||..||..=
T Consensus 1 C~~~~C~~~~~~~~~C~~C~~~FC~~H 27 (43)
T PF01428_consen 1 CSFPGCKKKDFLPFKCKHCGKSFCLKH 27 (43)
T ss_dssp -SSTTT--BCTSHEE-TTTS-EE-TTT
T ss_pred CccCcCcCccCCCeECCCCCcccCccc
Confidence 445 777777888887 999999653
No 286
>PLN02400 cellulose synthase
Probab=21.03 E-value=62 Score=37.16 Aligned_cols=46 Identities=26% Similarity=0.464 Sum_probs=35.6
Q ss_pred ccccccccccc-----CcEE--ccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 22 FRCCICLDLLY-----KPIV--LSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 22 l~C~IC~~~l~-----~Pv~--l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
-.|.||.+.+- +|.+ -.||--.|+.|. ++-++.++..||.|+..+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCccc
Confidence 38999998753 3433 359999999998 5566667788999999986
No 287
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=21.02 E-value=54 Score=29.59 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=11.8
Q ss_pred cccCCCccCCcccCC
Q 039128 227 VQQLKCEVCQCLNPN 241 (404)
Q Consensus 227 ~~~~~CP~Cr~~~~~ 241 (404)
...+.||.|+..+-.
T Consensus 134 ~~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 134 EYGFRCPQCGEMLEE 148 (178)
T ss_pred hcCCcCCCCCCCCee
Confidence 457899999998733
No 288
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=21.01 E-value=33 Score=33.76 Aligned_cols=45 Identities=24% Similarity=0.516 Sum_probs=32.0
Q ss_pred cceeeeecccCccCceecc----cC--CcchHHhhcccccccCCCccCCcc
Q 039128 194 VDVLCTACKQLLIHPVVLN----CG--HVYCETCIITPTVQQLKCEVCQCL 238 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~~l~----Cg--H~fC~~Cl~~~~~~~~~CP~Cr~~ 238 (404)
..-.||||...-.-.++.. =| +.+|.-|-..|.-....||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 3458999998654333221 23 668899999997778899999763
No 289
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=20.73 E-value=44 Score=30.98 Aligned_cols=46 Identities=26% Similarity=0.449 Sum_probs=35.9
Q ss_pred eeeeecccCccCcee-cccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 196 VLCTACKQLLIHPVV-LNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 196 ~~C~iC~~~~~~p~~-l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
..|.+|..+...-+. =+||-.+...|+..+++....||-|+-..+.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhcccCc
Confidence 469999998876542 2577778899999998888999999765443
No 290
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=20.37 E-value=72 Score=36.52 Aligned_cols=48 Identities=27% Similarity=0.597 Sum_probs=36.3
Q ss_pred CCccccccccccc-----CcEE-c-cCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 20 HSFRCCICLDLLY-----KPIV-L-SCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 20 ~~l~C~IC~~~l~-----~Pv~-l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
..-.|.||.+.+- +|.+ . .||--.|+.|. ++-+..++..||.|+..+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 3467999998753 3433 3 59999999999 5556567788999999886
No 291
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=20.13 E-value=39 Score=24.17 Aligned_cols=15 Identities=27% Similarity=0.835 Sum_probs=12.6
Q ss_pred ccCCcchHHhhcccc
Q 039128 212 NCGHVYCETCIITPT 226 (404)
Q Consensus 212 ~CgH~fC~~Cl~~~~ 226 (404)
.||+.||..|...|.
T Consensus 45 ~C~~~fC~~C~~~~H 59 (64)
T smart00647 45 KCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCeECCCCCCcCC
Confidence 589999999988764
Done!