Query 039128
Match_columns 404
No_of_seqs 489 out of 3025
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:43:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap4_A E3 ubiquitin ligase RNF 99.8 5.8E-20 2E-24 156.1 3.0 107 19-241 5-125 (133)
2 3l11_A E3 ubiquitin-protein li 99.5 4.7E-14 1.6E-18 117.2 5.5 79 192-270 12-98 (115)
3 3l11_A E3 ubiquitin-protein li 99.4 5.8E-14 2E-18 116.6 4.5 86 9-95 3-96 (115)
4 3ztg_A E3 ubiquitin-protein li 99.4 1.9E-13 6.4E-18 108.9 7.2 57 12-68 4-61 (92)
5 3fl2_A E3 ubiquitin-protein li 99.4 2.7E-14 9.1E-19 120.3 0.6 70 193-262 50-121 (124)
6 1t1h_A Gspef-atpub14, armadill 99.4 8.2E-14 2.8E-18 107.5 3.0 66 193-258 6-72 (78)
7 2ckl_A Polycomb group ring fin 99.4 6.3E-13 2.2E-17 109.1 6.9 77 13-91 7-89 (108)
8 4ayc_A E3 ubiquitin-protein li 99.4 3.5E-13 1.2E-17 115.7 5.4 53 17-71 49-101 (138)
9 2kr4_A Ubiquitin conjugation f 99.4 1.5E-13 5.1E-18 108.1 2.8 67 193-259 12-78 (85)
10 3ztg_A E3 ubiquitin-protein li 99.4 4E-13 1.4E-17 106.9 5.2 66 193-258 11-80 (92)
11 4ayc_A E3 ubiquitin-protein li 99.4 2.3E-13 7.9E-18 116.8 4.0 77 193-271 51-130 (138)
12 2kre_A Ubiquitin conjugation f 99.4 6.9E-13 2.4E-17 107.5 6.4 66 193-258 27-92 (100)
13 3fl2_A E3 ubiquitin-protein li 99.4 1.5E-13 5E-18 115.8 2.4 73 15-88 46-120 (124)
14 2ckl_A Polycomb group ring fin 99.4 3.9E-13 1.3E-17 110.4 4.7 69 192-260 12-85 (108)
15 1z6u_A NP95-like ring finger p 99.3 1.1E-13 3.7E-18 120.6 0.6 70 193-262 76-147 (150)
16 2kr4_A Ubiquitin conjugation f 99.3 1E-12 3.5E-17 103.3 6.1 71 13-85 6-77 (85)
17 2yur_A Retinoblastoma-binding 99.3 7E-13 2.4E-17 101.4 4.8 57 12-68 6-63 (74)
18 2kre_A Ubiquitin conjugation f 99.3 1.9E-12 6.5E-17 104.9 7.2 70 13-84 21-91 (100)
19 1t1h_A Gspef-atpub14, armadill 99.3 9.7E-13 3.3E-17 101.4 5.1 68 16-84 3-71 (78)
20 1wgm_A Ubiquitin conjugation f 99.3 3E-12 1E-16 103.4 7.8 74 9-84 10-85 (98)
21 1wgm_A Ubiquitin conjugation f 99.3 1.7E-12 5.7E-17 104.9 6.1 66 193-258 20-86 (98)
22 2ysl_A Tripartite motif-contai 99.3 1.9E-12 6.4E-17 98.3 5.9 62 8-69 7-69 (73)
23 2egp_A Tripartite motif-contai 99.3 1.9E-13 6.4E-18 105.5 -0.3 60 193-252 10-76 (79)
24 2ysj_A Tripartite motif-contai 99.3 3.1E-12 1.1E-16 94.4 5.9 56 8-63 7-63 (63)
25 2djb_A Polycomb group ring fin 99.3 2.8E-12 9.5E-17 97.4 5.0 57 12-70 6-63 (72)
26 2y43_A E3 ubiquitin-protein li 99.3 1.2E-12 4E-17 105.8 2.6 65 193-257 20-85 (99)
27 2csy_A Zinc finger protein 183 99.3 4.4E-12 1.5E-16 98.5 5.7 54 14-69 8-61 (81)
28 1z6u_A NP95-like ring finger p 99.3 1.7E-12 5.9E-17 113.0 3.3 72 15-87 72-145 (150)
29 2y43_A E3 ubiquitin-protein li 99.2 3.6E-12 1.2E-16 102.8 4.6 57 11-69 12-69 (99)
30 1jm7_B BARD1, BRCA1-associated 99.2 5.4E-12 1.9E-16 105.1 5.2 63 193-257 20-83 (117)
31 2egp_A Tripartite motif-contai 99.2 2.7E-12 9.4E-17 98.9 3.1 57 13-69 4-65 (79)
32 2ecy_A TNF receptor-associated 99.2 6.1E-12 2.1E-16 93.8 4.9 55 14-69 8-62 (66)
33 2csy_A Zinc finger protein 183 99.2 4.4E-12 1.5E-16 98.5 4.1 58 193-251 13-70 (81)
34 3lrq_A E3 ubiquitin-protein li 99.2 1.1E-12 3.7E-17 106.3 0.5 64 192-255 19-84 (100)
35 2ecw_A Tripartite motif-contai 99.2 1.3E-11 4.4E-16 96.1 5.6 57 13-69 11-71 (85)
36 2ecw_A Tripartite motif-contai 99.2 7.6E-13 2.6E-17 103.2 -1.5 61 193-253 17-83 (85)
37 2d8t_A Dactylidin, ring finger 99.2 1E-11 3.5E-16 94.0 4.4 52 15-68 9-60 (71)
38 3lrq_A E3 ubiquitin-protein li 99.2 2.7E-12 9.2E-17 104.0 0.8 56 13-69 14-70 (100)
39 1jm7_B BARD1, BRCA1-associated 99.2 5.3E-12 1.8E-16 105.1 2.6 65 1-69 1-67 (117)
40 2ecj_A Tripartite motif-contai 99.2 1.9E-11 6.6E-16 88.3 5.0 51 13-63 7-58 (58)
41 2yu4_A E3 SUMO-protein ligase 99.2 6.2E-12 2.1E-16 100.7 2.3 65 193-257 5-79 (94)
42 2djb_A Polycomb group ring fin 99.2 8.6E-12 2.9E-16 94.6 3.0 52 193-244 13-65 (72)
43 2ckl_B Ubiquitin ligase protei 99.2 6.8E-12 2.3E-16 110.8 2.7 69 192-260 51-122 (165)
44 2ecv_A Tripartite motif-contai 99.2 1.9E-11 6.6E-16 95.1 4.7 57 13-69 11-71 (85)
45 2ecv_A Tripartite motif-contai 99.2 1.2E-12 4.1E-17 102.1 -2.2 60 193-252 17-82 (85)
46 2ea6_A Ring finger protein 4; 99.2 1.4E-11 4.8E-16 92.2 3.5 55 13-69 7-68 (69)
47 2ct2_A Tripartite motif protei 99.2 2.7E-11 9.4E-16 95.1 5.2 58 12-69 6-68 (88)
48 2ecy_A TNF receptor-associated 99.1 2E-11 6.8E-16 90.9 4.0 49 193-241 13-62 (66)
49 1jm7_A BRCA1, breast cancer ty 99.1 6.7E-12 2.3E-16 103.3 1.4 66 193-258 19-87 (112)
50 1jm7_A BRCA1, breast cancer ty 99.1 8.5E-12 2.9E-16 102.7 1.6 55 15-69 15-70 (112)
51 2d8t_A Dactylidin, ring finger 99.1 1.8E-11 6.1E-16 92.6 3.1 48 193-240 13-60 (71)
52 2yur_A Retinoblastoma-binding 99.1 1.4E-11 4.9E-16 94.0 2.6 47 193-239 13-62 (74)
53 2ysl_A Tripartite motif-contai 99.1 3E-11 1E-15 91.5 4.1 49 193-241 18-69 (73)
54 2yu4_A E3 SUMO-protein ligase 99.1 4E-11 1.4E-15 95.9 4.8 52 17-68 3-62 (94)
55 1rmd_A RAG1; V(D)J recombinati 99.1 3.2E-11 1.1E-15 100.1 3.9 60 9-69 11-70 (116)
56 3hct_A TNF receptor-associated 99.1 3.6E-11 1.2E-15 100.2 4.0 55 14-69 11-65 (118)
57 2ckl_B Ubiquitin ligase protei 99.1 5E-11 1.7E-15 105.1 4.4 72 15-87 48-122 (165)
58 3hct_A TNF receptor-associated 99.1 2E-11 6.8E-16 101.8 1.5 63 192-254 15-78 (118)
59 3ng2_A RNF4, snurf, ring finge 99.1 4E-11 1.4E-15 90.3 2.5 51 17-69 6-63 (71)
60 2c2l_A CHIP, carboxy terminus 99.1 3E-11 1E-15 114.7 1.9 66 193-258 206-272 (281)
61 1bor_A Transcription factor PM 99.1 5.6E-11 1.9E-15 85.7 2.9 46 193-241 4-49 (56)
62 1g25_A CDK-activating kinase a 99.1 9.4E-11 3.2E-15 86.9 4.1 49 20-69 2-55 (65)
63 2ysj_A Tripartite motif-contai 99.1 5.2E-11 1.8E-15 87.7 2.7 43 193-235 18-63 (63)
64 2ea6_A Ring finger protein 4; 99.0 3.8E-11 1.3E-15 89.8 1.6 48 193-240 13-67 (69)
65 2f42_A STIP1 homology and U-bo 99.0 6.4E-11 2.2E-15 105.5 3.2 66 193-258 104-170 (179)
66 1rmd_A RAG1; V(D)J recombinati 99.0 3.8E-11 1.3E-15 99.6 1.6 62 193-254 21-84 (116)
67 3ng2_A RNF4, snurf, ring finge 99.0 3.6E-11 1.2E-15 90.6 1.3 50 193-242 8-64 (71)
68 1e4u_A Transcriptional repress 99.0 1.7E-10 5.9E-15 89.0 5.1 55 15-70 5-63 (78)
69 2ect_A Ring finger protein 126 99.0 1.7E-10 5.8E-15 88.7 4.9 55 13-69 7-64 (78)
70 2f42_A STIP1 homology and U-bo 99.0 1.3E-10 4.5E-15 103.5 4.4 69 15-84 100-169 (179)
71 1g25_A CDK-activating kinase a 99.0 6.3E-11 2.2E-15 87.9 1.9 51 194-244 2-58 (65)
72 2ecj_A Tripartite motif-contai 99.0 1.3E-10 4.4E-15 83.9 3.3 43 193-235 13-58 (58)
73 2c2l_A CHIP, carboxy terminus 99.0 1.7E-10 5.8E-15 109.5 5.1 69 15-84 202-271 (281)
74 2kiz_A E3 ubiquitin-protein li 99.0 2.7E-10 9.1E-15 85.4 5.1 54 14-69 7-63 (69)
75 3knv_A TNF receptor-associated 99.0 5.1E-11 1.7E-15 102.5 0.7 53 15-68 25-77 (141)
76 2ct2_A Tripartite motif protei 99.0 1.2E-10 4.1E-15 91.4 2.8 49 193-241 13-68 (88)
77 2ep4_A Ring finger protein 24; 99.0 2E-10 6.7E-15 87.4 3.9 57 12-70 6-65 (74)
78 1bor_A Transcription factor PM 99.0 7.5E-11 2.6E-15 85.0 1.3 46 19-69 4-49 (56)
79 1iym_A EL5; ring-H2 finger, ub 99.0 2.7E-10 9.4E-15 81.3 4.3 49 18-68 2-54 (55)
80 2ecn_A Ring finger protein 141 99.0 9.2E-11 3.1E-15 88.2 1.5 54 13-69 7-60 (70)
81 2xeu_A Ring finger protein 4; 99.0 1.2E-10 4.2E-15 85.6 2.1 48 20-69 2-56 (64)
82 3htk_C E3 SUMO-protein ligase 99.0 3.7E-10 1.3E-14 105.5 5.5 65 192-256 178-247 (267)
83 2ect_A Ring finger protein 126 99.0 2.3E-10 7.8E-15 87.9 3.1 49 193-241 13-64 (78)
84 3htk_C E3 SUMO-protein ligase 99.0 3.5E-10 1.2E-14 105.7 4.7 55 15-69 175-232 (267)
85 2ecm_A Ring finger and CHY zin 99.0 3.2E-10 1.1E-14 80.9 3.5 47 20-68 4-54 (55)
86 2l0b_A E3 ubiquitin-protein li 99.0 4.7E-10 1.6E-14 89.1 4.7 51 17-69 36-89 (91)
87 2xeu_A Ring finger protein 4; 98.9 1.1E-10 3.9E-15 85.8 0.6 49 194-242 2-57 (64)
88 1chc_A Equine herpes virus-1 r 98.9 3.5E-10 1.2E-14 84.5 3.2 49 19-69 3-52 (68)
89 1iym_A EL5; ring-H2 finger, ub 98.9 3E-10 1E-14 81.1 2.3 47 193-239 3-53 (55)
90 3knv_A TNF receptor-associated 98.9 2E-10 6.8E-15 98.8 1.6 48 192-239 28-76 (141)
91 2ecm_A Ring finger and CHY zin 98.9 1.8E-10 6.1E-15 82.2 0.9 47 194-240 4-54 (55)
92 3hcs_A TNF receptor-associated 98.9 4.6E-10 1.6E-14 99.4 3.6 55 14-69 11-65 (170)
93 2kiz_A E3 ubiquitin-protein li 98.9 4.6E-10 1.6E-14 84.1 3.1 51 193-243 12-65 (69)
94 2l0b_A E3 ubiquitin-protein li 98.9 7.1E-10 2.4E-14 88.0 4.2 49 193-241 38-89 (91)
95 1chc_A Equine herpes virus-1 r 98.9 2.3E-10 7.8E-15 85.5 1.2 49 193-241 3-52 (68)
96 1x4j_A Ring finger protein 38; 98.9 6.6E-10 2.3E-14 84.7 3.5 51 17-69 19-72 (75)
97 3hcs_A TNF receptor-associated 98.9 2.8E-10 9.5E-15 100.8 1.5 63 192-254 15-78 (170)
98 4ic3_A E3 ubiquitin-protein li 98.9 1.6E-10 5.4E-15 88.2 -0.1 50 14-69 17-67 (74)
99 2ecn_A Ring finger protein 141 98.9 3E-10 1E-14 85.4 1.2 48 193-241 13-60 (70)
100 1e4u_A Transcriptional repress 98.9 9.5E-10 3.3E-14 84.8 3.8 50 192-241 8-62 (78)
101 2ecg_A Baculoviral IAP repeat- 98.9 3.3E-10 1.1E-14 86.6 0.9 52 13-70 17-69 (75)
102 4ic3_A E3 ubiquitin-protein li 98.8 6.7E-10 2.3E-14 84.7 1.5 46 192-241 21-67 (74)
103 1x4j_A Ring finger protein 38; 98.8 6.2E-10 2.1E-14 84.9 1.3 49 193-241 21-72 (75)
104 1v87_A Deltex protein 2; ring- 98.8 2.7E-09 9.1E-14 88.0 4.9 50 20-69 24-94 (114)
105 4ap4_A E3 ubiquitin ligase RNF 98.8 7.4E-10 2.5E-14 93.3 1.0 50 193-242 5-61 (133)
106 2ep4_A Ring finger protein 24; 98.8 1.3E-09 4.5E-14 82.7 2.0 49 193-241 13-64 (74)
107 1v87_A Deltex protein 2; ring- 98.7 3.1E-09 1.1E-13 87.6 2.9 47 195-241 25-94 (114)
108 2ecg_A Baculoviral IAP repeat- 98.7 2.6E-09 8.8E-14 81.6 2.0 45 193-241 23-68 (75)
109 2ecl_A Ring-box protein 2; RNF 98.7 9.1E-09 3.1E-13 79.8 4.3 47 20-68 14-75 (81)
110 2vje_A E3 ubiquitin-protein li 98.7 4E-09 1.4E-13 78.1 0.8 48 193-240 6-56 (64)
111 2ecl_A Ring-box protein 2; RNF 98.6 9.7E-09 3.3E-13 79.6 2.8 47 194-240 14-75 (81)
112 2yho_A E3 ubiquitin-protein li 98.6 2.7E-09 9.3E-14 82.4 -0.4 51 13-69 10-61 (79)
113 2vje_A E3 ubiquitin-protein li 98.6 1.6E-08 5.4E-13 74.8 3.2 48 20-69 7-57 (64)
114 2vje_B MDM4 protein; proto-onc 98.6 7.3E-09 2.5E-13 76.4 0.9 48 193-240 5-55 (63)
115 2ea5_A Cell growth regulator w 98.6 3.1E-08 1.1E-12 74.1 3.7 45 19-69 13-58 (68)
116 2vje_B MDM4 protein; proto-onc 98.6 2.4E-08 8.3E-13 73.6 3.0 48 20-69 6-56 (63)
117 3dpl_R Ring-box protein 1; ubi 98.6 4.5E-08 1.6E-12 79.8 4.6 47 20-68 36-100 (106)
118 2yho_A E3 ubiquitin-protein li 98.6 1.3E-08 4.5E-13 78.5 1.3 45 193-241 16-61 (79)
119 2ea5_A Cell growth regulator w 98.5 2.7E-08 9.2E-13 74.5 2.7 45 193-241 13-58 (68)
120 2y1n_A E3 ubiquitin-protein li 98.5 3.2E-08 1.1E-12 97.9 4.0 51 18-69 329-379 (389)
121 2y1n_A E3 ubiquitin-protein li 98.5 3.7E-08 1.3E-12 97.5 2.1 48 194-241 331-379 (389)
122 2bay_A PRE-mRNA splicing facto 98.4 6E-08 2.1E-12 71.0 2.2 47 21-69 3-50 (61)
123 3dpl_R Ring-box protein 1; ubi 98.4 6.8E-08 2.3E-12 78.8 2.6 46 194-239 36-99 (106)
124 1wim_A KIAA0161 protein; ring 98.4 7.1E-08 2.4E-12 76.7 2.3 46 193-238 3-61 (94)
125 3t6p_A Baculoviral IAP repeat- 98.4 4.4E-08 1.5E-12 96.1 0.3 49 15-69 289-338 (345)
126 1wim_A KIAA0161 protein; ring 98.4 5.4E-08 1.9E-12 77.4 0.5 47 20-66 4-61 (94)
127 3t6p_A Baculoviral IAP repeat- 98.3 1.2E-07 4.2E-12 92.9 1.4 46 192-241 292-338 (345)
128 2bay_A PRE-mRNA splicing facto 98.3 7.8E-08 2.7E-12 70.4 -0.1 47 195-241 3-50 (61)
129 2d8s_A Cellular modulator of i 98.2 5.8E-07 2E-11 69.4 3.7 50 19-68 13-69 (80)
130 4a0k_B E3 ubiquitin-protein li 98.2 2.3E-07 7.7E-12 76.9 0.2 47 20-68 47-111 (117)
131 4a0k_B E3 ubiquitin-protein li 98.1 3.6E-07 1.2E-11 75.7 0.3 46 194-239 47-110 (117)
132 2ct0_A Non-SMC element 1 homol 98.0 9.6E-06 3.3E-10 61.4 5.3 49 20-68 14-63 (74)
133 2d8s_A Cellular modulator of i 97.9 2.2E-06 7.5E-11 66.1 1.6 48 193-240 13-69 (80)
134 2ct0_A Non-SMC element 1 homol 97.6 7.2E-05 2.5E-09 56.6 4.5 48 194-241 14-64 (74)
135 1vyx_A ORF K3, K3RING; zinc-bi 97.5 5.4E-05 1.8E-09 54.9 3.0 50 19-68 4-58 (60)
136 3vk6_A E3 ubiquitin-protein li 97.1 0.0003 1E-08 55.7 3.6 46 23-69 3-49 (101)
137 3k1l_B Fancl; UBC, ring, RWD, 96.9 0.00021 7.3E-09 69.0 1.3 51 18-68 305-372 (381)
138 3vk6_A E3 ubiquitin-protein li 96.9 0.00028 9.6E-09 55.8 1.5 44 197-240 3-48 (101)
139 1vyx_A ORF K3, K3RING; zinc-bi 96.9 0.00043 1.5E-08 50.1 2.4 48 193-240 4-58 (60)
140 3k1l_B Fancl; UBC, ring, RWD, 96.0 0.00078 2.7E-08 65.1 -0.9 49 193-241 306-373 (381)
141 3m62_A Ubiquitin conjugation f 95.8 0.0091 3.1E-07 65.0 5.9 71 15-87 885-957 (968)
142 2jun_A Midline-1; B-BOX, TRIM, 95.5 0.0055 1.9E-07 48.6 2.4 32 20-51 2-36 (101)
143 3nw0_A Non-structural maintena 95.5 0.011 3.8E-07 54.7 4.7 50 20-69 179-229 (238)
144 2jun_A Midline-1; B-BOX, TRIM, 95.5 0.0033 1.1E-07 49.9 0.8 31 194-224 2-35 (101)
145 3m62_A Ubiquitin conjugation f 94.8 0.011 3.8E-07 64.4 2.8 66 193-258 889-955 (968)
146 2ffw_A Midline-1; B-BOX, ring 94.3 0.0026 8.8E-08 48.5 -2.7 44 310-353 29-73 (78)
147 3nw0_A Non-structural maintena 91.9 0.091 3.1E-06 48.4 3.4 50 195-244 180-232 (238)
148 2ko5_A Ring finger protein Z; 89.9 0.22 7.6E-06 38.7 3.2 50 191-242 24-74 (99)
149 2cs3_A Protein C14ORF4, MY039 86.6 0.37 1.3E-05 36.3 2.4 37 19-55 13-53 (93)
150 3i2d_A E3 SUMO-protein ligase 82.2 0.98 3.3E-05 44.1 4.0 52 17-68 245-299 (371)
151 4fo9_A E3 SUMO-protein ligase 79.7 1.3 4.6E-05 42.9 4.0 52 17-68 211-265 (360)
152 2dip_A Zinc finger SWIM domain 76.6 0.065 2.2E-06 42.5 -5.2 40 306-345 26-66 (98)
153 3i2d_A E3 SUMO-protein ligase 73.8 1.5 5.3E-05 42.7 2.6 63 193-255 247-314 (371)
154 4fo9_A E3 SUMO-protein ligase 70.0 2.2 7.4E-05 41.5 2.6 63 193-255 213-280 (360)
155 2ko5_A Ring finger protein Z; 69.3 1.7 5.7E-05 33.8 1.3 46 20-69 27-73 (99)
156 2cs3_A Protein C14ORF4, MY039 68.6 2.9 9.8E-05 31.5 2.4 34 193-226 13-50 (93)
157 1z60_A TFIIH basal transcripti 56.5 6.8 0.00023 27.7 2.4 40 196-235 16-58 (59)
158 2lri_C Autoimmune regulator; Z 54.2 16 0.00055 26.2 4.2 50 19-69 10-62 (66)
159 2k2d_A Ring finger and CHY zin 52.5 0.71 2.4E-05 34.9 -3.5 33 232-265 1-34 (79)
160 3mjh_B Early endosome antigen 52.0 2.1 7.1E-05 26.9 -0.8 15 195-209 5-19 (34)
161 1wil_A KIAA1045 protein; ring 49.7 11 0.00037 28.6 2.7 44 193-237 13-75 (89)
162 2lbm_A Transcriptional regulat 49.0 18 0.00061 30.3 4.3 46 19-65 61-116 (142)
163 2lri_C Autoimmune regulator; Z 48.4 14 0.00049 26.5 3.2 42 195-238 12-59 (66)
164 1weo_A Cellulose synthase, cat 45.9 23 0.0008 27.1 4.1 47 21-68 16-69 (93)
165 2lbm_A Transcriptional regulat 45.7 7.7 0.00026 32.5 1.5 44 194-237 62-116 (142)
166 2gmg_A Hypothetical protein PF 45.4 11 0.00038 29.8 2.3 29 206-239 66-94 (105)
167 1y02_A CARP2, FYVE-ring finger 45.3 3.3 0.00011 33.8 -0.8 45 195-239 19-67 (120)
168 1wd2_A Ariadne-1 protein homol 43.6 8.5 0.00029 27.2 1.3 33 196-228 7-47 (60)
169 2e5r_A Dystrobrevin alpha; ZZ 42.6 0.27 9.1E-06 35.6 -6.9 36 308-344 9-45 (63)
170 2fc7_A ZZZ3 protein; structure 42.3 9.1 0.00031 28.9 1.3 42 303-344 13-58 (82)
171 2jrp_A Putative cytoplasmic pr 42.1 4.1 0.00014 30.8 -0.6 39 196-239 3-41 (81)
172 2k16_A Transcription initiatio 39.6 10 0.00035 27.7 1.3 50 19-68 16-70 (75)
173 1mm2_A MI2-beta; PHD, zinc fin 39.5 14 0.00047 26.0 1.9 43 194-238 8-56 (61)
174 2l5u_A Chromodomain-helicase-D 39.1 22 0.00074 24.9 2.9 44 193-238 9-58 (61)
175 2gmg_A Hypothetical protein PF 38.3 19 0.00066 28.4 2.7 33 32-71 66-98 (105)
176 1f62_A Transcription factor WS 37.2 25 0.00086 23.4 2.9 42 197-238 2-50 (51)
177 2jmo_A Parkin; IBR, E3 ligase, 37.1 9 0.00031 28.6 0.6 20 212-233 55-74 (80)
178 2jne_A Hypothetical protein YF 36.6 5.3 0.00018 31.1 -0.8 40 195-239 32-71 (101)
179 1m3v_A FLIN4, fusion of the LI 36.6 22 0.00075 28.4 2.9 48 20-69 31-81 (122)
180 1fp0_A KAP-1 corepressor; PHD 36.2 23 0.00078 27.1 2.7 44 193-238 23-72 (88)
181 3t7l_A Zinc finger FYVE domain 35.0 18 0.00063 27.5 2.1 31 20-50 19-53 (90)
182 1joc_A EEA1, early endosomal a 34.6 13 0.00043 30.4 1.1 31 195-225 69-103 (125)
183 2yql_A PHD finger protein 21A; 33.9 9.7 0.00033 26.2 0.3 43 193-237 7-55 (56)
184 2ct7_A Ring finger protein 31; 33.8 16 0.00055 27.5 1.5 28 23-50 27-60 (86)
185 1z2q_A LM5-1; membrane protein 33.6 15 0.0005 27.6 1.3 32 194-225 20-55 (84)
186 1vfy_A Phosphatidylinositol-3- 33.1 19 0.00066 26.2 1.9 29 21-49 11-43 (73)
187 2yw8_A RUN and FYVE domain-con 32.7 15 0.00051 27.5 1.2 31 195-225 19-53 (82)
188 1wen_A Inhibitor of growth fam 32.6 34 0.0012 24.8 3.1 49 19-68 14-67 (71)
189 1weo_A Cellulose synthase, cat 32.6 30 0.001 26.5 2.8 46 195-240 16-69 (93)
190 2xjy_A Rhombotin-2; oncoprotei 31.7 31 0.0011 27.6 3.1 48 19-68 27-77 (131)
191 2xqn_T Testin, TESS; metal-bin 31.3 31 0.0011 27.4 3.0 46 20-69 29-75 (126)
192 1m3v_A FLIN4, fusion of the LI 31.1 15 0.00052 29.3 1.1 50 192-241 29-81 (122)
193 3zyq_A Hepatocyte growth facto 31.1 24 0.00081 31.7 2.4 37 13-49 156-196 (226)
194 2yt5_A Metal-response element- 30.9 14 0.00049 26.1 0.8 47 193-239 4-62 (66)
195 1wff_A Riken cDNA 2810002D23 p 30.9 49 0.0017 25.1 3.7 27 20-46 24-52 (85)
196 1wfk_A Zinc finger, FYVE domai 30.3 14 0.00049 28.1 0.7 32 194-225 8-43 (88)
197 1x4u_A Zinc finger, FYVE domai 29.5 16 0.00053 27.5 0.8 31 195-225 14-48 (84)
198 3ql9_A Transcriptional regulat 29.0 56 0.0019 26.7 4.1 44 194-237 56-110 (129)
199 1xwh_A Autoimmune regulator; P 28.8 17 0.00058 25.9 0.9 44 193-238 6-55 (66)
200 1weu_A Inhibitor of growth fam 28.0 44 0.0015 25.6 3.1 49 19-68 34-87 (91)
201 3o36_A Transcription intermedi 26.6 25 0.00085 30.3 1.7 43 195-239 4-52 (184)
202 1rut_X Flinc4, fusion protein 26.4 20 0.00069 30.9 1.1 48 20-69 31-81 (188)
203 1wg2_A Zinc finger (AN1-like) 26.3 52 0.0018 23.5 3.0 28 19-46 13-41 (64)
204 2ku3_A Bromodomain-containing 26.3 32 0.0011 25.0 2.0 46 193-238 14-66 (71)
205 1dvp_A HRS, hepatocyte growth 25.8 27 0.00091 31.1 1.8 35 15-49 155-193 (220)
206 2rgt_A Fusion of LIM/homeobox 25.4 67 0.0023 26.9 4.3 45 20-68 32-76 (169)
207 1wev_A Riken cDNA 1110020M19; 25.4 15 0.0005 28.0 -0.1 47 193-239 14-73 (88)
208 1zbd_B Rabphilin-3A; G protein 24.6 8.1 0.00028 32.0 -1.8 43 195-237 55-106 (134)
209 1we9_A PHD finger family prote 24.5 22 0.00074 25.0 0.7 46 193-238 4-58 (64)
210 3ql9_A Transcriptional regulat 24.0 67 0.0023 26.2 3.7 47 19-65 55-110 (129)
211 2lv9_A Histone-lysine N-methyl 23.4 31 0.001 26.7 1.5 43 194-237 27-75 (98)
212 2puy_A PHD finger protein 21A; 23.1 22 0.00075 24.7 0.5 43 194-238 4-52 (60)
213 2l43_A N-teminal domain from h 22.9 24 0.00081 26.8 0.7 53 15-67 19-76 (88)
214 2jtn_A LIM domain-binding prot 22.5 63 0.0022 27.5 3.6 45 20-68 86-130 (182)
215 2xjy_A Rhombotin-2; oncoprotei 22.4 23 0.00078 28.4 0.6 51 190-240 24-77 (131)
216 1wfh_A Zinc finger (AN1-like) 20.8 80 0.0027 22.5 3.1 27 20-46 14-41 (64)
217 2o35_A Hypothetical protein DU 20.5 35 0.0012 26.6 1.2 13 42-54 42-54 (105)
218 3fyb_A Protein of unknown func 20.4 35 0.0012 26.6 1.2 12 42-53 41-52 (104)
219 2pv0_B DNA (cytosine-5)-methyl 20.4 45 0.0016 32.5 2.3 45 194-238 92-148 (386)
220 1rut_X Flinc4, fusion protein 20.2 17 0.00057 31.5 -0.8 51 190-240 27-80 (188)
221 3u5n_A E3 ubiquitin-protein li 20.0 32 0.0011 30.3 1.1 43 195-239 7-55 (207)
No 1
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.77 E-value=5.8e-20 Score=156.15 Aligned_cols=107 Identities=28% Similarity=0.615 Sum_probs=87.3
Q ss_pred CCCcccccccccccCc-------EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCCchhHHHHHHHHHHchHHHHH
Q 039128 19 SHSFRCCICLDLLYKP-------IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFPSICVMLHRLLLKMYPIAYKM 91 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~P-------v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~~~~~~l~~~l~~~~~~~~~~ 91 (404)
.+.+.|+||++.+.+| +.++|||+||..||.+|+. ....||+||+.+........
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~l~~l---------------- 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHKRYHPI---------------- 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT--TCSBCTTTCCBCTTTCEEEC----------------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH--hCCCCCCCCCcCcccccccc----------------
Confidence 5679999999999998 9999999999999999998 45589999997653111000
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCCCccCCCcCCCccccccccccCCCCCCCCcchhhhcccccccCCCCCCccccccc
Q 039128 92 REIEILEDERRYDFFSPQLDNHACGPLVDNECHHLNDSMQFSRIFCGSSSKTGSHENMEQLESVSVAMNNGTSEQSSIEG 171 (404)
Q Consensus 92 r~~~~~e~~~~~~~~~p~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~~ss~~~s~e~~e~~~~~s~~~~~~~~~~~~~~~ 171 (404)
T Consensus 67 -------------------------------------------------------------------------------- 66 (133)
T 4ap4_A 67 -------------------------------------------------------------------------------- 66 (133)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCccccccccccccceeeeecccCccCc-------eecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 172 ITVAGKKLPPNELNHNCKQISIVDVLCTACKQLLIHP-------VVLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~p-------~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
....+...|+||++.+.+| +.++|||+||..|+.+|+.....||+||..+..
T Consensus 67 ------------------~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 67 ------------------YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp ------------------BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred ------------------ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 0002345799999999887 888999999999999998888999999998754
No 2
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.45 E-value=4.7e-14 Score=117.19 Aligned_cols=79 Identities=25% Similarity=0.562 Sum_probs=67.0
Q ss_pred cccceeeeecccCccCceecccCCcchHHhhcccccc-cCCCccCCcccCC-------CCCcchHHHHHHHHHHhHHHHH
Q 039128 192 SIVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQ-QLKCEVCQCLNPN-------GFPKVCLELDQFLEEQFSKEYA 263 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~-------~~~~~~~~l~~~l~~~~~~~~~ 263 (404)
..+++.|+||++++.+|++++|||+||..||..|+.. ...||+||..+.. ....+|..|.+++.+++|.+++
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~~~ 91 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECK 91 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHHHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHHHH
Confidence 4678899999999999999999999999999999754 6789999998742 3456899999999999999988
Q ss_pred HHHHHHh
Q 039128 264 LRRDVIL 270 (404)
Q Consensus 264 ~r~~~~~ 270 (404)
.|+....
T Consensus 92 ~r~~~~e 98 (115)
T 3l11_A 92 LRASGQE 98 (115)
T ss_dssp HHHHC--
T ss_pred HHHhhhh
Confidence 7766443
No 3
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.43 E-value=5.8e-14 Score=116.64 Aligned_cols=86 Identities=26% Similarity=0.559 Sum_probs=67.2
Q ss_pred cccCCcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC--------CCchhHHHHHH
Q 039128 9 VKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH--------FPSICVMLHRL 80 (404)
Q Consensus 9 ~~~~~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~--------~~~~~~~l~~~ 80 (404)
|+.......+.+++.|+||++++.+||+++|||+||..||..|+.. +...||+||..+.. ...++..+..+
T Consensus 3 m~~~~~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~ 81 (115)
T 3l11_A 3 MALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTI 81 (115)
T ss_dssp CCCCTTCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHH
T ss_pred CcccccccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccCccccccccccchhhHHHHHH
Confidence 3444455667788999999999999999999999999999998863 35679999998752 22345667888
Q ss_pred HHHHchHHHHHHHHH
Q 039128 81 LLKMYPIAYKMREIE 95 (404)
Q Consensus 81 l~~~~~~~~~~r~~~ 95 (404)
+.++++.+.+.+...
T Consensus 82 i~~~~p~~~~~r~~~ 96 (115)
T 3l11_A 82 IQKHYPRECKLRASG 96 (115)
T ss_dssp HHHHSHHHHHHHHHC
T ss_pred HHHHCCHHHHHHHhh
Confidence 888988766655443
No 4
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=108.86 Aligned_cols=57 Identities=26% Similarity=0.666 Sum_probs=50.4
Q ss_pred CCcccccCCCcccccccccccCcEEcc-CCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 12 NAEPEKISHSFRCCICLDLLYKPIVLS-CGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 12 ~~~~~~l~~~l~C~IC~~~l~~Pv~l~-CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
....+.+.+.+.|+||+++|.+||+++ |||+||..||..|+...+...||+||..+.
T Consensus 4 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 4 GSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp SSSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345677889999999999999999999 999999999999997555678999999973
No 5
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.40 E-value=2.7e-14 Score=120.33 Aligned_cols=70 Identities=21% Similarity=0.418 Sum_probs=61.6
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhccccc-ccCCCccCCcccCC-CCCcchHHHHHHHHHHhHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTV-QQLKCEVCQCLNPN-GFPKVCLELDQFLEEQFSKEY 262 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~-~~~~~~~~l~~~l~~~~~~~~ 262 (404)
.+++.|+||+++|.+|++++|||+||..||..|+. ....||+||..+.. ..+.+|..|.++++.++|...
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~~ 121 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGYG 121 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTTT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccccc
Confidence 56689999999999999999999999999999875 45599999999865 567899999999999998653
No 6
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.40 E-value=8.2e-14 Score=107.47 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=58.4
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccc-cCCCccCCcccCCCCCcchHHHHHHHHHHh
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQ-QLKCEVCQCLNPNGFPKVCLELDQFLEEQF 258 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~ 258 (404)
.+++.|+||+++|.+|++++|||+||..||..|+.. ...||+||..+.......|..|+++++.+.
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 467899999999999999999999999999999865 788999999987666778889999986554
No 7
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.37 E-value=6.3e-13 Score=109.11 Aligned_cols=77 Identities=19% Similarity=0.440 Sum_probs=61.9
Q ss_pred CcccccCCCcccccccccccCcEEc-cCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCC-----chhHHHHHHHHHHch
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIVL-SCGHISCFWCVHRSMNGLRESHCPICRRPYNHFP-----SICVMLHRLLLKMYP 86 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~-----~~~~~l~~~l~~~~~ 86 (404)
...+.+.+.+.|+||++++.+|+++ +|||+||..||..|+.. ...||+||..+.... ..+..+..++..+++
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp EEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred cchhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh--CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 3456788899999999999999998 99999999999999983 477999999987531 234567778888877
Q ss_pred HHHHH
Q 039128 87 IAYKM 91 (404)
Q Consensus 87 ~~~~~ 91 (404)
.....
T Consensus 85 ~~~~~ 89 (108)
T 2ckl_A 85 GLFKN 89 (108)
T ss_dssp THHHH
T ss_pred hHHHH
Confidence 54433
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.37 E-value=3.5e-13 Score=115.67 Aligned_cols=53 Identities=28% Similarity=0.818 Sum_probs=46.5
Q ss_pred ccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCC
Q 039128 17 KISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFP 71 (404)
Q Consensus 17 ~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~ 71 (404)
.+.+++.|+||++.+.+||+++|||+||..||..|+. ....||+||+++...+
T Consensus 49 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 49 VLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK--RKIECPICRKDIKSKT 101 (138)
T ss_dssp HHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT--TCSBCTTTCCBCCCEE
T ss_pred hccccCCCcccCcccCCceECCCCCCccHHHHHHHHH--cCCcCCCCCCcCCCCC
Confidence 3456789999999999999999999999999999987 5667999999987543
No 9
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.37 E-value=1.5e-13 Score=108.13 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=60.3
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHHHhH
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEEQFS 259 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~~ 259 (404)
.+++.||||+++|.+||+++|||+||+.||..|+.....||+|+..+....+..|..|.++|+.+..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~ 78 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMR 78 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred chheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999998777899999999876677899999999977653
No 10
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.36 E-value=4e-13 Score=106.91 Aligned_cols=66 Identities=26% Similarity=0.543 Sum_probs=57.0
Q ss_pred ccceeeeecccCccCceecc-cCCcchHHhhccccc--ccCCCccCCccc-CCCCCcchHHHHHHHHHHh
Q 039128 193 IVDVLCTACKQLLIHPVVLN-CGHVYCETCIITPTV--QQLKCEVCQCLN-PNGFPKVCLELDQFLEEQF 258 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~-CgH~fC~~Cl~~~~~--~~~~CP~Cr~~~-~~~~~~~~~~l~~~l~~~~ 258 (404)
.+++.|+||+++|.+|++++ |||+||..||..|+. ....||+||..+ ....+.+|..|.++++.+.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 80 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFK 80 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHH
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHH
Confidence 56789999999999999999 999999999999864 346899999997 4556789999999996654
No 11
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.36 E-value=2.3e-13 Score=116.80 Aligned_cols=77 Identities=27% Similarity=0.574 Sum_probs=60.3
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHHH---hHHHHHHHHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEEQ---FSKEYALRRDVI 269 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~---~~~~~~~r~~~~ 269 (404)
++++.|+||++.+.+|++++|||+||..||..|+.....||+||..+... ..+..+++++..+ ++.++..|+...
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~~~l~~~~~~rr~~~ 128 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK--TYSLVLDNCINKMVNNLSSEVKERRIVL 128 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE--EECHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC--CCccchhHHHHHHHHHhhHHHHHHHHHH
Confidence 45678999999999999999999999999999998889999999988542 3455555555543 446667776554
Q ss_pred hc
Q 039128 270 LN 271 (404)
Q Consensus 270 ~~ 271 (404)
..
T Consensus 129 ~~ 130 (138)
T 4ayc_A 129 IR 130 (138)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 12
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.36 E-value=6.9e-13 Score=107.53 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=60.2
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHHHh
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEEQF 258 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~ 258 (404)
.+++.||||+++|.+||+++|||+||+.||..|+.....||+|+.++....+..|..|.++|+.+.
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 567999999999999999999999999999999887889999999997777889999999996654
No 13
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.36 E-value=1.5e-13 Score=115.77 Aligned_cols=73 Identities=27% Similarity=0.635 Sum_probs=60.1
Q ss_pred ccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC--CCchhHHHHHHHHHHchHH
Q 039128 15 PEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH--FPSICVMLHRLLLKMYPIA 88 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~--~~~~~~~l~~~l~~~~~~~ 88 (404)
.+.+.+.+.|+||++++.+||+++|||+||..||..|+.. +...||+||..+.. ....+..+..++..+++.+
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred HHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH-CcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 4566778999999999999999999999999999999973 45589999999975 2334566778888887753
No 14
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.36 E-value=3.9e-13 Score=110.39 Aligned_cols=69 Identities=17% Similarity=0.415 Sum_probs=61.0
Q ss_pred cccceeeeecccCccCceec-ccCCcchHHhhcccccccCCCccCCcccCCC----CCcchHHHHHHHHHHhHH
Q 039128 192 SIVDVLCTACKQLLIHPVVL-NCGHVYCETCIITPTVQQLKCEVCQCLNPNG----FPKVCLELDQFLEEQFSK 260 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~----~~~~~~~l~~~l~~~~~~ 260 (404)
..+++.|+||++.+.+|+++ +|||+||..||..|+.....||+||..+... ....|..|.++++.+++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~ 85 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG 85 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence 35678999999999999998 9999999999999988789999999998654 447889999999998883
No 15
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.34 E-value=1.1e-13 Score=120.61 Aligned_cols=70 Identities=21% Similarity=0.431 Sum_probs=61.5
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhccccccc-CCCccCCcccCCC-CCcchHHHHHHHHHHhHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQ-LKCEVCQCLNPNG-FPKVCLELDQFLEEQFSKEY 262 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~-~~CP~Cr~~~~~~-~~~~~~~l~~~l~~~~~~~~ 262 (404)
.+.+.|+||++.|.+|++++|||+||..||..|+... ..||+||..+... .+.+|..|+++++.++|..+
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~~~ 147 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYS 147 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTTTT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhHhh
Confidence 4678999999999999999999999999999997644 5899999998665 67899999999999987654
No 16
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.34 E-value=1e-12 Score=103.34 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=55.8
Q ss_pred CcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCC-chhHHHHHHHHHHc
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFP-SICVMLHRLLLKMY 85 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~-~~~~~l~~~l~~~~ 85 (404)
.....+.+++.||||+++|.+||+++|||+||+.||..|+. ....||+|+..+.... ..+..++..+..+.
T Consensus 6 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 6 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL--NSPTDPFNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred hhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHh--cCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence 33566788999999999999999999999999999999998 3567999999987422 22344555555543
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.34 E-value=7e-13 Score=101.35 Aligned_cols=57 Identities=26% Similarity=0.666 Sum_probs=50.3
Q ss_pred CCcccccCCCcccccccccccCcEEcc-CCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 12 NAEPEKISHSFRCCICLDLLYKPIVLS-CGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 12 ~~~~~~l~~~l~C~IC~~~l~~Pv~l~-CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
....+.+.+.+.|+||++++.+||+++ |||+||..||..|+...+...||+||+.+.
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 6 SGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 455678889999999999999999999 999999999999998555578999999765
No 18
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.33 E-value=1.9e-12 Score=104.94 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=55.3
Q ss_pred CcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCC-chhHHHHHHHHHH
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFP-SICVMLHRLLLKM 84 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~-~~~~~l~~~l~~~ 84 (404)
.....+.+.+.||||+++|.+||+++|||+||+.||..||. ....||+|+.++.... ..+..++..+..+
T Consensus 21 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL--NSPTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp CSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT--SCSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred hhhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH--cCCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 34566788999999999999999999999999999999998 4578999999987422 2234455555444
No 19
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.33 E-value=9.7e-13 Score=101.36 Aligned_cols=68 Identities=21% Similarity=0.398 Sum_probs=53.0
Q ss_pred cccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCC-chhHHHHHHHHHH
Q 039128 16 EKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFP-SICVMLHRLLLKM 84 (404)
Q Consensus 16 ~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~-~~~~~l~~~l~~~ 84 (404)
..+.+.+.|+||+++|.+||+++|||+||+.||..|+.. +...||+||+.+.... ..+..++.++..+
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence 356789999999999999999999999999999999973 4678999999986422 2233344444443
No 20
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.32 E-value=3e-12 Score=103.40 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=57.1
Q ss_pred cccCCcccccCCCcccccccccccCcEEccCC-CcccHHHHHHhHcCCCCCCCCCCCcCCCCCC-chhHHHHHHHHHH
Q 039128 9 VKSNAEPEKISHSFRCCICLDLLYKPIVLSCG-HISCFWCVHRSMNGLRESHCPICRRPYNHFP-SICVMLHRLLLKM 84 (404)
Q Consensus 9 ~~~~~~~~~l~~~l~C~IC~~~l~~Pv~l~CG-H~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~-~~~~~l~~~l~~~ 84 (404)
+........+.+++.||||+++|.+||+++|| |+||+.||..||.. ...||+||.++.... ..+..++..+..+
T Consensus 10 ~~~~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 10 QQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CSCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred ccchhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 44445567788999999999999999999999 99999999999984 567999999987432 2233444444433
No 21
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.32 E-value=1.7e-12 Score=104.88 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=59.7
Q ss_pred ccceeeeecccCccCceecccC-CcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHHHh
Q 039128 193 IVDVLCTACKQLLIHPVVLNCG-HVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEEQF 258 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~Cg-H~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~ 258 (404)
.+++.||||+++|.+||+++|| |+||+.||..|+.....||+|+..+....+.+|..|.++|+.+.
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred cHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHH
Confidence 4678999999999999999999 99999999999877889999999997777889999999996554
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=98.34 Aligned_cols=62 Identities=29% Similarity=0.664 Sum_probs=53.1
Q ss_pred ccccCCcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcC-CCCCCCCCCCcCCCC
Q 039128 8 TVKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNG-LRESHCPICRRPYNH 69 (404)
Q Consensus 8 ~~~~~~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~-~~~~~CP~CR~~~~~ 69 (404)
.++.....+.+.+.+.|+||++.+.+|++++|||+||..||..|+.. .....||+||+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 7 GMASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccccHHHHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 35555667888999999999999999999999999999999999873 245679999998764
No 23
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.30 E-value=1.9e-13 Score=105.50 Aligned_cols=60 Identities=28% Similarity=0.631 Sum_probs=49.4
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccc-------cCCCccCCcccCCCCCcchHHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQ-------QLKCEVCQCLNPNGFPKVCLELDQ 252 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~-------~~~CP~Cr~~~~~~~~~~~~~l~~ 252 (404)
.+++.|+||++.+.+|++++|||+||..|+..|+.. ...||+||..+.......|..|++
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 567899999999999999999999999999998654 678999999986544445544433
No 24
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.1e-12 Score=94.38 Aligned_cols=56 Identities=32% Similarity=0.718 Sum_probs=48.3
Q ss_pred ccccCCcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcC-CCCCCCCCC
Q 039128 8 TVKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNG-LRESHCPIC 63 (404)
Q Consensus 8 ~~~~~~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~-~~~~~CP~C 63 (404)
.+++....+.+.+.+.|+||++.+.+|++++|||+||..||.+|+.. .....||+|
T Consensus 7 ~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 7 GMASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp SCCCCCCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccchHHHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45556667888999999999999999999999999999999999973 245679998
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.8e-12 Score=97.37 Aligned_cols=57 Identities=21% Similarity=0.519 Sum_probs=49.9
Q ss_pred CCcccccCCCcccccccccccCcEEc-cCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCC
Q 039128 12 NAEPEKISHSFRCCICLDLLYKPIVL-SCGHISCFWCVHRSMNGLRESHCPICRRPYNHF 70 (404)
Q Consensus 12 ~~~~~~l~~~l~C~IC~~~l~~Pv~l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~ 70 (404)
....+.+.+.+.|+||++.+.+|+++ +|||+||..||..|+. ....||+||+.+...
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 6 SGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFY--YSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHH--HCSSCTTTCCCCCSS
T ss_pred hhhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHH--cCCcCCCcCcccCcc
Confidence 34567788899999999999999997 9999999999999997 356799999998743
No 26
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.2e-12 Score=105.75 Aligned_cols=65 Identities=20% Similarity=0.372 Sum_probs=57.8
Q ss_pred ccceeeeecccCccCceec-ccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVL-NCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEEQ 257 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~ 257 (404)
.+++.|+||++.+.+|+++ +|||+||..|+..|......||+||..+.......|..+.++++.+
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSL 85 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHH
Confidence 5678999999999999988 8999999999999988888999999998765667899999998654
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.4e-12 Score=98.45 Aligned_cols=54 Identities=30% Similarity=0.671 Sum_probs=47.6
Q ss_pred cccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 14 EPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 14 ~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
..+...+.+.|+||++.+.+|++++|||+||..||..|+. ....||+||+.+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 8 GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFR--ATPRCYICDQPTGG 61 (81)
T ss_dssp CSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHH--HCSBCSSSCCBCCS
T ss_pred CcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHH--CCCcCCCcCccccc
Confidence 3456677899999999999999999999999999999997 46679999999863
No 28
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.26 E-value=1.7e-12 Score=112.96 Aligned_cols=72 Identities=31% Similarity=0.628 Sum_probs=58.9
Q ss_pred ccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCC--CchhHHHHHHHHHHchH
Q 039128 15 PEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHF--PSICVMLHRLLLKMYPI 87 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~--~~~~~~l~~~l~~~~~~ 87 (404)
.+.+.+.+.|+||++++.+||+++|||+||..||..|+.. ....||+||..+... ...+..+..++..+++.
T Consensus 72 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 72 LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred HHhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 3456678999999999999999999999999999999984 445799999998754 33456677777777664
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.25 E-value=3.6e-12 Score=102.84 Aligned_cols=57 Identities=23% Similarity=0.650 Sum_probs=49.8
Q ss_pred cCCcccccCCCcccccccccccCcEEc-cCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 11 SNAEPEKISHSFRCCICLDLLYKPIVL-SCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 11 ~~~~~~~l~~~l~C~IC~~~l~~Pv~l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
+....+.+.+.+.|+||++.+.+|+++ +|||+||..||..|+. ....||+||..+..
T Consensus 12 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 12 GLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS--YKTQCPTCCVTVTE 69 (99)
T ss_dssp GGGGGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCG
T ss_pred chhHHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH--CCCCCCCCCCcCCh
Confidence 344567778899999999999999998 8999999999999998 45689999998874
No 30
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=5.4e-12 Score=105.07 Aligned_cols=63 Identities=25% Similarity=0.508 Sum_probs=56.4
Q ss_pred ccceeeeecccCccCceec-ccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVL-NCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEEQ 257 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~ 257 (404)
.+++.|+||+++|.+|+++ +|||+||..||..|+. ..||+||..+....+.+|..|.++++.+
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLC 83 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHHH
Confidence 5678999999999999999 9999999999999977 7899999998766678899999998654
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.23 E-value=2.7e-12 Score=98.87 Aligned_cols=57 Identities=33% Similarity=0.785 Sum_probs=49.6
Q ss_pred CcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCC-----CCCCCCCCCcCCCC
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGL-----RESHCPICRRPYNH 69 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~-----~~~~CP~CR~~~~~ 69 (404)
...+.+.+.+.|+||++.+.+|++++|||+||..||..|+... ....||+||..+..
T Consensus 4 ~~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 4 GSSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SSSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred chHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3467788899999999999999999999999999999988752 26789999998864
No 32
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.1e-12 Score=93.76 Aligned_cols=55 Identities=20% Similarity=0.532 Sum_probs=48.2
Q ss_pred cccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 14 EPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 14 ~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
..+.+.+.+.|+||++.+.+|+.++|||+||..||..|+.. ....||+||+.+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS-SSPKCTACQESIVK 62 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT-SSCCCTTTCCCCCT
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh-CcCCCCCCCcCCCh
Confidence 35667889999999999999999999999999999999962 45679999998764
No 33
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.4e-12 Score=98.47 Aligned_cols=58 Identities=26% Similarity=0.578 Sum_probs=49.2
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCCCCCcchHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELD 251 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~ 251 (404)
...+.|+||++.+.+|++++|||+||..||..|+.....||+||..+.. ....+..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~-~~~~~~~l~ 70 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGG-IFNPAKELM 70 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS-CCEECHHHH
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc-cCCcHHHHH
Confidence 4568999999999999999999999999999998888899999999863 345554443
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.23 E-value=1.1e-12 Score=106.31 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=53.4
Q ss_pred cccceeeeecccCccCcee-cccCCcchHHhhccccccc-CCCccCCcccCCCCCcchHHHHHHHH
Q 039128 192 SIVDVLCTACKQLLIHPVV-LNCGHVYCETCIITPTVQQ-LKCEVCQCLNPNGFPKVCLELDQFLE 255 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~-l~CgH~fC~~Cl~~~~~~~-~~CP~Cr~~~~~~~~~~~~~l~~~l~ 255 (404)
..+++.|+||+++|.+|++ ++|||+||..||..|+... ..||+||..+.......+..++++++
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~ 84 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ 84 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence 4677899999999999999 9999999999999997665 79999999986555556666666653
No 35
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=1.3e-11 Score=96.14 Aligned_cols=57 Identities=33% Similarity=0.772 Sum_probs=50.1
Q ss_pred CcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCC----CCCCCCCCCcCCCC
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGL----RESHCPICRRPYNH 69 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~----~~~~CP~CR~~~~~ 69 (404)
...+.+.+.+.|+||++.+.+|++++|||+||..||..|+... +...||+||..+..
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 11 SVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4567788899999999999999999999999999999998853 26789999998863
No 36
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=7.6e-13 Score=103.19 Aligned_cols=61 Identities=31% Similarity=0.646 Sum_probs=50.1
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccc------cCCCccCCcccCCCCCcchHHHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQ------QLKCEVCQCLNPNGFPKVCLELDQF 253 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~------~~~CP~Cr~~~~~~~~~~~~~l~~~ 253 (404)
.+++.|+||++.+.+|++++|||+||..|+..|+.. ...||+||..+.......|..|+++
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 456789999999999999999999999999998654 7899999999866555555544443
No 37
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1e-11 Score=93.97 Aligned_cols=52 Identities=27% Similarity=0.675 Sum_probs=45.5
Q ss_pred ccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 15 PEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.+...+.+.|+||++.+.+|+.++|||+||..||..|+. ....||+||+.+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 9 TAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW--LGKRCALCRQEIP 60 (71)
T ss_dssp CCSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTT--CSSBCSSSCCBCC
T ss_pred cccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHH--CCCcCcCcCchhC
Confidence 344566799999999999999999999999999999987 4467999999876
No 38
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.18 E-value=2.7e-12 Score=103.98 Aligned_cols=56 Identities=32% Similarity=0.817 Sum_probs=49.1
Q ss_pred CcccccCCCcccccccccccCcEE-ccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIV-LSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~-l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
...+.+.+.+.|+||++++.+|+. ++|||+||..||..|+... ...||+||..+..
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 14 QSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred cccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCCH
Confidence 345778889999999999999999 9999999999999999843 2679999999864
No 39
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=5.3e-12 Score=105.12 Aligned_cols=65 Identities=31% Similarity=0.681 Sum_probs=53.1
Q ss_pred CCCccccc-cccCCcccccCCCcccccccccccCcEEc-cCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 1 MEDQTVLT-VKSNAEPEKISHSFRCCICLDLLYKPIVL-SCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 1 m~~~~~~~-~~~~~~~~~l~~~l~C~IC~~~l~~Pv~l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
|++..... +.+....+.+.+.+.|+||++++.+||++ +|||+||..||..|+. ..||+||..+..
T Consensus 1 m~~~~~~~~~~~~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 1 MEPDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWI 67 (117)
T ss_dssp CCSSTTCCCHHHHHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSC
T ss_pred CCCCcccCccchHHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCcc
Confidence 55544433 33445578888999999999999999999 9999999999999876 569999999863
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.9e-11 Score=88.31 Aligned_cols=51 Identities=31% Similarity=0.832 Sum_probs=44.5
Q ss_pred CcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcC-CCCCCCCCC
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNG-LRESHCPIC 63 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~-~~~~~CP~C 63 (404)
...+.+.+.+.|+||++.+.+|+.++|||+||..||..|+.. .....||+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 7 GALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hHhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456777889999999999999999999999999999999764 255679998
No 41
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=6.2e-12 Score=100.71 Aligned_cols=65 Identities=22% Similarity=0.316 Sum_probs=55.3
Q ss_pred ccceeeeecccCccCceecc-cCCcchHHhhcccccc------cCCCcc--CCcc-cCCCCCcchHHHHHHHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVLN-CGHVYCETCIITPTVQ------QLKCEV--CQCL-NPNGFPKVCLELDQFLEEQ 257 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~-CgH~fC~~Cl~~~~~~------~~~CP~--Cr~~-~~~~~~~~~~~l~~~l~~~ 257 (404)
..++.||||+++|.+||+++ |||+||+.||..|+.. ...||+ |+.. +....+..|..|.++|+.+
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENH 79 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHH
Confidence 56789999999999999996 9999999999999653 368999 9876 6655678899999998554
No 42
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=8.6e-12 Score=94.62 Aligned_cols=52 Identities=27% Similarity=0.694 Sum_probs=46.2
Q ss_pred ccceeeeecccCccCceec-ccCCcchHHhhcccccccCCCccCCcccCCCCC
Q 039128 193 IVDVLCTACKQLLIHPVVL-NCGHVYCETCIITPTVQQLKCEVCQCLNPNGFP 244 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~ 244 (404)
.+++.|+||++.+.+|+++ +|||+||..||..|+.....||+||..+....+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 5678999999999999987 999999999999998778899999999865433
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.17 E-value=6.8e-12 Score=110.75 Aligned_cols=69 Identities=19% Similarity=0.478 Sum_probs=58.8
Q ss_pred cccceeeeecccCccCceec-ccCCcchHHhhcccccc-cCCCccCCcccC-CCCCcchHHHHHHHHHHhHH
Q 039128 192 SIVDVLCTACKQLLIHPVVL-NCGHVYCETCIITPTVQ-QLKCEVCQCLNP-NGFPKVCLELDQFLEEQFSK 260 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~l-~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~-~~~~~~~~~l~~~l~~~~~~ 260 (404)
..+++.|+||++.|.+|+++ +|||+||..||..|+.. ...||+||..+. ...+.+|..|++++..+++.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 45778999999999999987 99999999999999765 788999999883 34567899999999998874
No 44
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=95.10 Aligned_cols=57 Identities=35% Similarity=0.778 Sum_probs=50.0
Q ss_pred CcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcC----CCCCCCCCCCcCCCC
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNG----LRESHCPICRRPYNH 69 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~----~~~~~CP~CR~~~~~ 69 (404)
...+.+.+.+.|+||++.+.+|+.++|||+||..||..|+.. .+...||+||..+..
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 11 GILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 456778889999999999999999999999999999999874 246789999998873
No 45
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.2e-12 Score=102.07 Aligned_cols=60 Identities=25% Similarity=0.640 Sum_probs=49.2
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccc------cCCCccCCcccCCCCCcchHHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQ------QLKCEVCQCLNPNGFPKVCLELDQ 252 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~------~~~CP~Cr~~~~~~~~~~~~~l~~ 252 (404)
.+.+.|+||++.+.+|++++|||+||..|+..|+.. ...||+||..+.......|..|++
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 467899999999999999999999999999998654 789999999986544455544443
No 46
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.4e-11 Score=92.17 Aligned_cols=55 Identities=31% Similarity=0.725 Sum_probs=47.4
Q ss_pred CcccccCCCcccccccccccCc-------EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 13 AEPEKISHSFRCCICLDLLYKP-------IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~P-------v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
...+.+.+.+.|+||++.+.+| +.++|||+||..||..|+. ....||+||+.+..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 7 GTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH--HCSSCTTTCCCCCC
T ss_pred ccccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH--cCCCCCCCCCccCc
Confidence 3456678889999999999887 8899999999999999998 35679999998753
No 47
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.7e-11 Score=95.09 Aligned_cols=58 Identities=22% Similarity=0.665 Sum_probs=49.7
Q ss_pred CCcccccCCCcccccccccccC----cEEccCCCcccHHHHHHhHcCC-CCCCCCCCCcCCCC
Q 039128 12 NAEPEKISHSFRCCICLDLLYK----PIVLSCGHISCFWCVHRSMNGL-RESHCPICRRPYNH 69 (404)
Q Consensus 12 ~~~~~~l~~~l~C~IC~~~l~~----Pv~l~CGH~fC~~Ci~~~~~~~-~~~~CP~CR~~~~~ 69 (404)
....+.+.+.+.|+||++.+.+ |+.++|||+||..||..|+... ....||+||+.+..
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 6 SGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3456778889999999999998 9999999999999999998843 34689999998764
No 48
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2e-11 Score=90.91 Aligned_cols=49 Identities=29% Similarity=0.632 Sum_probs=44.3
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccc-cccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPT-VQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~-~~~~~CP~Cr~~~~~ 241 (404)
.+++.|+||++.+.+|++++|||+||..||..|+ .....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 5678999999999999999999999999999997 466789999998754
No 49
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=6.7e-12 Score=103.26 Aligned_cols=66 Identities=23% Similarity=0.538 Sum_probs=54.3
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhccccccc---CCCccCCcccCCCCCcchHHHHHHHHHHh
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQ---LKCEVCQCLNPNGFPKVCLELDQFLEEQF 258 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~---~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~ 258 (404)
.+.+.|+||++.+.+|++++|||+||..||..|+... ..||+||..+.......|..+.++++.+.
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 4567899999999999999999999999999986533 58999999987655666666777776555
No 50
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=8.5e-12 Score=102.66 Aligned_cols=55 Identities=29% Similarity=0.792 Sum_probs=47.7
Q ss_pred ccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCC-CCCCCCCCCcCCCC
Q 039128 15 PEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGL-RESHCPICRRPYNH 69 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~-~~~~CP~CR~~~~~ 69 (404)
.+.+.+.+.|+||++.+.+|++++|||+||..||..|+... +...||+||..+..
T Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 15 INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred HHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 45667789999999999999999999999999999999853 33579999998874
No 51
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.8e-11 Score=92.61 Aligned_cols=48 Identities=31% Similarity=0.729 Sum_probs=44.1
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNP 240 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 240 (404)
.+++.|+||++.+.+|++++|||+||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 466789999999999999999999999999999888899999999864
No 52
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.13 E-value=1.4e-11 Score=94.00 Aligned_cols=47 Identities=32% Similarity=0.858 Sum_probs=42.4
Q ss_pred ccceeeeecccCccCceecc-cCCcchHHhhcccccc--cCCCccCCccc
Q 039128 193 IVDVLCTACKQLLIHPVVLN-CGHVYCETCIITPTVQ--QLKCEVCQCLN 239 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~-CgH~fC~~Cl~~~~~~--~~~CP~Cr~~~ 239 (404)
.+++.|+||++.|.+|++++ |||+||..||..|+.. ...||+||+.+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 56789999999999999999 9999999999999754 37899999975
No 53
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3e-11 Score=91.55 Aligned_cols=49 Identities=31% Similarity=0.784 Sum_probs=43.9
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhccccc---ccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTV---QQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~---~~~~CP~Cr~~~~~ 241 (404)
.+++.|+||++.+.+|++++|||+||..||..|+. ....||+||..+..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 56789999999999999999999999999999975 56789999998754
No 54
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=4e-11 Score=95.95 Aligned_cols=52 Identities=25% Similarity=0.463 Sum_probs=44.3
Q ss_pred ccCCCcccccccccccCcEEcc-CCCcccHHHHHHhHcCC----CCCCCCC--CCcC-CC
Q 039128 17 KISHSFRCCICLDLLYKPIVLS-CGHISCFWCVHRSMNGL----RESHCPI--CRRP-YN 68 (404)
Q Consensus 17 ~l~~~l~C~IC~~~l~~Pv~l~-CGH~fC~~Ci~~~~~~~----~~~~CP~--CR~~-~~ 68 (404)
...+.+.||||+++|.+||+++ |||+||+.||..||... +...||+ |+.. +.
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 4567899999999999999996 99999999999999743 3468999 9866 44
No 55
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.11 E-value=3.2e-11 Score=100.06 Aligned_cols=60 Identities=32% Similarity=0.645 Sum_probs=51.1
Q ss_pred cccCCcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 9 VKSNAEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 9 ~~~~~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
+......+.+.+.+.|+||++.+.+|+.++|||+||..||..|+.. ....||+||..+..
T Consensus 11 ~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 11 LLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKV-MGSYCPSCRYPCFP 70 (116)
T ss_dssp GBSSCCCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCG
T ss_pred HhhhhhHHhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhH-CcCcCCCCCCCCCH
Confidence 3444556777889999999999999999999999999999999984 24579999999874
No 56
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.10 E-value=3.6e-11 Score=100.17 Aligned_cols=55 Identities=24% Similarity=0.530 Sum_probs=48.4
Q ss_pred cccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 14 EPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 14 ~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
..+.+.+.+.|+||++++.+||.++|||+||..||..|+... ...||+||..+..
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLE 65 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC-CCCCCCCCCCcCH
Confidence 467788899999999999999999999999999999998742 2379999998874
No 57
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.08 E-value=5e-11 Score=105.12 Aligned_cols=72 Identities=26% Similarity=0.582 Sum_probs=54.6
Q ss_pred ccccCCCcccccccccccCcEEc-cCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCC--chhHHHHHHHHHHchH
Q 039128 15 PEKISHSFRCCICLDLLYKPIVL-SCGHISCFWCVHRSMNGLRESHCPICRRPYNHFP--SICVMLHRLLLKMYPI 87 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~--~~~~~l~~~l~~~~~~ 87 (404)
.+.+.+.+.|+||++.+.+|+.+ +|||+||..||..|+.. +...||+||..+.... ..+..+..++..+.+.
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 34566778999999999999997 99999999999999984 3567999999985322 2345566677666653
No 58
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.08 E-value=2e-11 Score=101.78 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=50.7
Q ss_pred cccceeeeecccCccCceecccCCcchHHhhccccccc-CCCccCCcccCCCCCcchHHHHHHH
Q 039128 192 SIVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQ-LKCEVCQCLNPNGFPKVCLELDQFL 254 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~-~~CP~Cr~~~~~~~~~~~~~l~~~l 254 (404)
..+++.|+||++.+.+|++++|||+||..||..|+... ..||+||..+.......+..+.+++
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i 78 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHH
Confidence 35678999999999999999999999999999997544 4899999998654444555555544
No 59
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.07 E-value=4e-11 Score=90.32 Aligned_cols=51 Identities=33% Similarity=0.808 Sum_probs=44.7
Q ss_pred ccCCCcccccccccccCc-------EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 17 KISHSFRCCICLDLLYKP-------IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 17 ~l~~~l~C~IC~~~l~~P-------v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
...+.+.|+||++.+.+| +.++|||+||..||..|+. ....||+||+.+..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH--cCCCCCCCCCccCh
Confidence 345679999999999888 8999999999999999998 44689999999874
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=3e-11 Score=114.74 Aligned_cols=66 Identities=11% Similarity=-0.001 Sum_probs=57.4
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccc-cCCCccCCcccCCCCCcchHHHHHHHHHHh
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQ-QLKCEVCQCLNPNGFPKVCLELDQFLEEQF 258 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~ 258 (404)
...+.||||++++.+||+++|||+||+.||..|+.. ...||+|+.++......+|..|.++|+.+.
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 467899999999999999999999999999999754 345999999997666789999999997665
No 61
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=5.6e-11 Score=85.70 Aligned_cols=46 Identities=26% Similarity=0.645 Sum_probs=40.7
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
.+.+.|+||++.+.+|++++|||+||..|+.. ....||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeec
Confidence 45678999999999999999999999999987 35689999998754
No 62
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=9.4e-11 Score=86.94 Aligned_cols=49 Identities=29% Similarity=0.613 Sum_probs=42.3
Q ss_pred CCcccccccc-cccCc----EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLD-LLYKP----IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~-~l~~P----v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
+++.|+||++ ++.+| ++++|||+||..||.+|+.. +...||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 4688999999 89888 57899999999999999764 45679999999864
No 63
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=5.2e-11 Score=87.73 Aligned_cols=43 Identities=35% Similarity=0.919 Sum_probs=39.1
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhccccc---ccCCCccC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTV---QQLKCEVC 235 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~---~~~~CP~C 235 (404)
.+++.|+||++.+.+|++++|||+||..||..|+. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 56789999999999999999999999999999975 56689998
No 64
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=3.8e-11 Score=89.75 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=43.5
Q ss_pred ccceeeeecccCccCc-------eecccCCcchHHhhcccccccCCCccCCcccC
Q 039128 193 IVDVLCTACKQLLIHP-------VVLNCGHVYCETCIITPTVQQLKCEVCQCLNP 240 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p-------~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 240 (404)
.+.+.|+||++.+.+| ++++|||.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 5678899999999988 88999999999999999887889999999874
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.04 E-value=6.4e-11 Score=105.50 Aligned_cols=66 Identities=11% Similarity=-0.003 Sum_probs=57.4
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccc-cCCCccCCcccCCCCCcchHHHHHHHHHHh
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQ-QLKCEVCQCLNPNGFPKVCLELDQFLEEQF 258 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~ 258 (404)
.+.+.||||+++|.+||+++|||+||+.||..|+.. ...||+|+.++....+.+|..|.++|+.+.
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 467899999999999999999999999999999753 346999999987667789999999996654
No 66
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.04 E-value=3.8e-11 Score=99.63 Aligned_cols=62 Identities=21% Similarity=0.486 Sum_probs=49.2
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccc-cCCCccCCcccCCCC-CcchHHHHHHH
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQ-QLKCEVCQCLNPNGF-PKVCLELDQFL 254 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~~~-~~~~~~l~~~l 254 (404)
.+++.|+||++.+.+|++++|||+||..||..|+.. ...||+||..+.... ...+..+.+++
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i 84 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL 84 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHH
Confidence 567899999999999999999999999999999764 678999999985432 23344444444
No 67
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.04 E-value=3.6e-11 Score=90.58 Aligned_cols=50 Identities=24% Similarity=0.523 Sum_probs=44.9
Q ss_pred ccceeeeecccCccCc-------eecccCCcchHHhhcccccccCCCccCCcccCCC
Q 039128 193 IVDVLCTACKQLLIHP-------VVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNG 242 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p-------~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 242 (404)
.+++.|+||++.+.+| ++++|||+||..||..|+.....||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 5678899999999998 8899999999999999988788999999988543
No 68
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.04 E-value=1.7e-10 Score=89.02 Aligned_cols=55 Identities=29% Similarity=0.741 Sum_probs=44.9
Q ss_pred ccccCCCccccccccccc--CcEEcc--CCCcccHHHHHHhHcCCCCCCCCCCCcCCCCC
Q 039128 15 PEKISHSFRCCICLDLLY--KPIVLS--CGHISCFWCVHRSMNGLRESHCPICRRPYNHF 70 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~--~Pv~l~--CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~ 70 (404)
...+.+++.|+||++.+. ++++++ |||.||+.|+..+|.. ....||+||+.+...
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPED 63 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSSC
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCCC
Confidence 455688899999999884 456655 9999999999998864 567899999998753
No 69
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.03 E-value=1.7e-10 Score=88.65 Aligned_cols=55 Identities=20% Similarity=0.535 Sum_probs=46.1
Q ss_pred CcccccCCCcccccccccccCc---EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 13 AEPEKISHSFRCCICLDLLYKP---IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~P---v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
...+.+.+.+.|+||++.|..+ +.++|||+||..||.+|+. ....||+||+.+..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 7 GTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE--QHDSCPVCRKSLTG 64 (78)
T ss_dssp CCCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT--TTCSCTTTCCCCCC
T ss_pred CCcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH--cCCcCcCcCCccCC
Confidence 3455667889999999999765 5679999999999999997 44689999999874
No 70
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.02 E-value=1.3e-10 Score=103.48 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=53.8
Q ss_pred ccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCC-CchhHHHHHHHHHH
Q 039128 15 PEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHF-PSICVMLHRLLLKM 84 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~-~~~~~~l~~~l~~~ 84 (404)
...+.+.+.||||+++|.+||+++|||+||+.||..|+...+. .||+|+.++... ...+..++..+..+
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 4567889999999999999999999999999999999985333 699999998742 22234455555444
No 71
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=6.3e-11 Score=87.88 Aligned_cols=51 Identities=27% Similarity=0.470 Sum_probs=42.4
Q ss_pred cceeeeeccc-CccCc----eecccCCcchHHhhcccc-cccCCCccCCcccCCCCC
Q 039128 194 VDVLCTACKQ-LLIHP----VVLNCGHVYCETCIITPT-VQQLKCEVCQCLNPNGFP 244 (404)
Q Consensus 194 ~~~~C~iC~~-~~~~p----~~l~CgH~fC~~Cl~~~~-~~~~~CP~Cr~~~~~~~~ 244 (404)
+++.|+||++ ++.+| ++++|||+||..|+.+++ .....||+||+.+.....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3578999999 99999 468999999999999984 456789999999865433
No 72
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.3e-10 Score=83.89 Aligned_cols=43 Identities=35% Similarity=0.953 Sum_probs=38.8
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhccc---ccccCCCccC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITP---TVQQLKCEVC 235 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~---~~~~~~CP~C 235 (404)
.+.+.|+||++.+.+|++++|||+||..||..| ......||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 467889999999999999999999999999999 4467889998
No 73
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.01 E-value=1.7e-10 Score=109.53 Aligned_cols=69 Identities=12% Similarity=0.176 Sum_probs=52.8
Q ss_pred ccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCC-chhHHHHHHHHHH
Q 039128 15 PEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFP-SICVMLHRLLLKM 84 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~-~~~~~l~~~l~~~ 84 (404)
...+.+.+.||||+++|.+||+++|||+||+.||..|+...+ ..||+||.++.... ..+..++.++..+
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 345668899999999999999999999999999999998533 34999999987422 2234455555444
No 74
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=2.7e-10 Score=85.40 Aligned_cols=54 Identities=30% Similarity=0.562 Sum_probs=44.7
Q ss_pred cccccCCCccccccccccc---CcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 14 EPEKISHSFRCCICLDLLY---KPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 14 ~~~~l~~~l~C~IC~~~l~---~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
..+.......|+||++.+. .++.++|||.||..||..|+.. ...||+||+.+..
T Consensus 7 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 7 EGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEA 63 (69)
T ss_dssp TCCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCS
T ss_pred CcCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc--CCCCcCcCccccC
Confidence 3455567889999999884 4678999999999999999984 4569999998874
No 75
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.00 E-value=5.1e-11 Score=102.54 Aligned_cols=53 Identities=23% Similarity=0.643 Sum_probs=46.6
Q ss_pred ccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 15 PEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.+.+.+.+.|+||+++|.+||.++|||+||..||..|+.. +...||+||.++.
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred hccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 3677889999999999999999999999999999999873 3457999999764
No 76
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.2e-10 Score=91.37 Aligned_cols=49 Identities=22% Similarity=0.638 Sum_probs=43.4
Q ss_pred ccceeeeecccCccC----ceecccCCcchHHhhcccccc---cCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIH----PVVLNCGHVYCETCIITPTVQ---QLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~----p~~l~CgH~fC~~Cl~~~~~~---~~~CP~Cr~~~~~ 241 (404)
.+.+.|+||++.+.+ |++++|||+||..|+..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 567889999999999 999999999999999999754 3899999998744
No 77
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2e-10 Score=87.36 Aligned_cols=57 Identities=18% Similarity=0.425 Sum_probs=47.0
Q ss_pred CCcccccCCCcccccccccccCcEE---ccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCC
Q 039128 12 NAEPEKISHSFRCCICLDLLYKPIV---LSCGHISCFWCVHRSMNGLRESHCPICRRPYNHF 70 (404)
Q Consensus 12 ~~~~~~l~~~l~C~IC~~~l~~Pv~---l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~ 70 (404)
.....++.+...|+||++.+..+.. ++|||.||..||..|+.. ...||+||+.+...
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 6 SGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV--RKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH--CSBCTTTCCBCSSC
T ss_pred ccccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc--CCcCCCcCcccccc
Confidence 3456677888999999999976644 499999999999999984 45799999998753
No 78
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=7.5e-11 Score=85.04 Aligned_cols=46 Identities=30% Similarity=0.676 Sum_probs=40.5
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 19 SHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
.+.+.|+||++.+.+|++++|||+||..||.. ....||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA-----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS-----SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc-----CCCCCCcCCcEeec
Confidence 56789999999999999999999999999866 34579999998864
No 79
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.99 E-value=2.7e-10 Score=81.32 Aligned_cols=49 Identities=31% Similarity=0.634 Sum_probs=42.1
Q ss_pred cCCCcccccccccccC---cEEcc-CCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 18 ISHSFRCCICLDLLYK---PIVLS-CGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 18 l~~~l~C~IC~~~l~~---Pv~l~-CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
+.+...|+||++.+.+ ++.++ |||.||..||.+|+. ....||+||+.+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~--~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG--SHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT--TCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH--cCCcCcCCCCEeE
Confidence 4567899999999977 78887 999999999999987 4567999998763
No 80
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=9.2e-11 Score=88.21 Aligned_cols=54 Identities=30% Similarity=0.784 Sum_probs=47.2
Q ss_pred CcccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
...+.+.+.+.|+||++.+.+ +.++|||+||..||..|+. ....||+||+.+..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 7 GRVKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred hhhhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 345667788999999999998 9999999999999999887 56789999998864
No 81
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.98 E-value=1.2e-10 Score=85.59 Aligned_cols=48 Identities=33% Similarity=0.827 Sum_probs=42.6
Q ss_pred CCcccccccccccCc-------EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLYKP-------IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~~P-------v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
+.+.|+||++.+.+| +.++|||+||..||.+|+.. ...||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 568999999999887 88999999999999999983 5689999998874
No 82
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.97 E-value=3.7e-10 Score=105.48 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=56.7
Q ss_pred cccceeeeecccCccCceec-ccCCcchHHhhcccccc--cCCCcc--CCcccCCCCCcchHHHHHHHHH
Q 039128 192 SIVDVLCTACKQLLIHPVVL-NCGHVYCETCIITPTVQ--QLKCEV--CQCLNPNGFPKVCLELDQFLEE 256 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~l-~CgH~fC~~Cl~~~~~~--~~~CP~--Cr~~~~~~~~~~~~~l~~~l~~ 256 (404)
...++.||||+++|.+||++ .|||+||+.||..++.. ...||+ |++.+....+.+|..|.++++.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKI 247 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHH
Confidence 36788999999999999985 99999999999998653 468999 9999877677899999999854
No 83
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.96 E-value=2.3e-10 Score=87.90 Aligned_cols=49 Identities=24% Similarity=0.485 Sum_probs=42.9
Q ss_pred ccceeeeecccCccCc---eecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHP---VVLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p---~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
..+..|+||++.|.++ ++++|||.||..||.+|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 4677899999999876 456999999999999998888899999998854
No 84
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.96 E-value=3.5e-10 Score=105.68 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=48.0
Q ss_pred ccccCCCcccccccccccCcEEc-cCCCcccHHHHHHhHcCCCCCCCCC--CCcCCCC
Q 039128 15 PEKISHSFRCCICLDLLYKPIVL-SCGHISCFWCVHRSMNGLRESHCPI--CRRPYNH 69 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l-~CGH~fC~~Ci~~~~~~~~~~~CP~--CR~~~~~ 69 (404)
.......+.||||+++|.+||+. .|||+||+.||..||...+...||+ |++.+..
T Consensus 175 v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 175 IEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 45567889999999999999985 8999999999999998655678999 9998763
No 85
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.95 E-value=3.2e-10 Score=80.89 Aligned_cols=47 Identities=32% Similarity=0.683 Sum_probs=40.9
Q ss_pred CCcccccccccccC----cEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 20 HSFRCCICLDLLYK----PIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 20 ~~l~C~IC~~~l~~----Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
+...|+||++.+.+ ++.++|||.||..||..|+.. ...||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE--GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 46789999999865 788999999999999999984 378999998764
No 86
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.95 E-value=4.7e-10 Score=89.06 Aligned_cols=51 Identities=25% Similarity=0.548 Sum_probs=43.5
Q ss_pred ccCCCcccccccccccC---cEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 17 KISHSFRCCICLDLLYK---PIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 17 ~l~~~l~C~IC~~~l~~---Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
...+...|+||++.+.. ++.++|||.||..||..|+. ....||+||+.+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ--KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT--TTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH--cCCcCcCcCccCCC
Confidence 34567899999999876 78899999999999999998 45689999998753
No 87
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.94 E-value=1.1e-10 Score=85.81 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=43.5
Q ss_pred cceeeeecccCccCc-------eecccCCcchHHhhcccccccCCCccCCcccCCC
Q 039128 194 VDVLCTACKQLLIHP-------VVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNG 242 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p-------~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 242 (404)
+++.|+||++.+.+| +.++|||.||..|+.+|+.....||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 457899999999987 7889999999999999988788999999988553
No 88
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.94 E-value=3.5e-10 Score=84.45 Aligned_cols=49 Identities=31% Similarity=0.777 Sum_probs=42.5
Q ss_pred CCCcccccccccccCc-EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 19 SHSFRCCICLDLLYKP-IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~P-v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
.+...|+||++.+.+| +.++|||+||..|+..|+. ....||+||+.+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIR--QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHH--HSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHh--CcCcCcCCChhhHh
Confidence 3467899999999987 7899999999999999987 44689999998763
No 89
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.92 E-value=3e-10 Score=81.11 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=41.8
Q ss_pred ccceeeeecccCccC---ceecc-cCCcchHHhhcccccccCCCccCCccc
Q 039128 193 IVDVLCTACKQLLIH---PVVLN-CGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~---p~~l~-CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
+++..|+||++.+.+ ++.++ |||.||..|+..|+.....||+||+.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 456789999999987 77787 999999999999988889999999875
No 90
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.92 E-value=2e-10 Score=98.82 Aligned_cols=48 Identities=29% Similarity=0.726 Sum_probs=43.0
Q ss_pred cccceeeeecccCccCceecccCCcchHHhhccccccc-CCCccCCccc
Q 039128 192 SIVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQ-LKCEVCQCLN 239 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~-~~CP~Cr~~~ 239 (404)
..+++.|+||+++|.+|++++|||+||..||..|+... ..||+||..+
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 36789999999999999999999999999999997644 5899999975
No 91
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.92 E-value=1.8e-10 Score=82.24 Aligned_cols=47 Identities=23% Similarity=0.496 Sum_probs=41.4
Q ss_pred cceeeeecccCccC----ceecccCCcchHHhhcccccccCCCccCCcccC
Q 039128 194 VDVLCTACKQLLIH----PVVLNCGHVYCETCIITPTVQQLKCEVCQCLNP 240 (404)
Q Consensus 194 ~~~~C~iC~~~~~~----p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 240 (404)
++..|+||++.+.+ +++++|||.||..||..|+.....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45689999999976 778899999999999999877799999998763
No 92
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.91 E-value=4.6e-10 Score=99.36 Aligned_cols=55 Identities=24% Similarity=0.530 Sum_probs=48.2
Q ss_pred cccccCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 14 EPEKISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 14 ~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
..+.+.+.+.|+||+++|.+||.++|||+||..||..|+... ...||+||..+..
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLE 65 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC-CCCCCCCccCcch
Confidence 456788899999999999999999999999999999998742 3479999998864
No 93
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.91 E-value=4.6e-10 Score=84.07 Aligned_cols=51 Identities=22% Similarity=0.463 Sum_probs=43.0
Q ss_pred ccceeeeecccCcc---CceecccCCcchHHhhcccccccCCCccCCcccCCCC
Q 039128 193 IVDVLCTACKQLLI---HPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNGF 243 (404)
Q Consensus 193 ~~~~~C~iC~~~~~---~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~ 243 (404)
..+..|+||++.+. .++.++|||.||..||..|+.....||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 45678999999885 4578899999999999999877788999999885543
No 94
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.91 E-value=7.1e-10 Score=88.00 Aligned_cols=49 Identities=22% Similarity=0.586 Sum_probs=43.5
Q ss_pred ccceeeeecccCccC---ceecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIH---PVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~---p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
.++..|+||++.|.+ ++.++|||.||..||..|+.....||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456789999999887 7789999999999999998888899999998753
No 95
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.91 E-value=2.3e-10 Score=85.46 Aligned_cols=49 Identities=24% Similarity=0.492 Sum_probs=43.0
Q ss_pred ccceeeeecccCccCc-eecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHP-VVLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p-~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
..+..|+||++.+.+| +.++|||.||..|+..|+.....||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3456899999999997 788999999999999998877899999998743
No 96
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=6.6e-10 Score=84.71 Aligned_cols=51 Identities=27% Similarity=0.533 Sum_probs=43.6
Q ss_pred ccCCCcccccccccccCc---EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 17 KISHSFRCCICLDLLYKP---IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 17 ~l~~~l~C~IC~~~l~~P---v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
...+...|+||++.+..+ +.++|||.||..||..|+. ....||+||+.+..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~--~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK--ANRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHH--HCSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHH--cCCcCcCcCCcCCC
Confidence 345678999999999877 7789999999999999998 44679999998764
No 97
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.89 E-value=2.8e-10 Score=100.79 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=50.3
Q ss_pred cccceeeeecccCccCceecccCCcchHHhhcccccc-cCCCccCCcccCCCCCcchHHHHHHH
Q 039128 192 SIVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQ-QLKCEVCQCLNPNGFPKVCLELDQFL 254 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~-~~~CP~Cr~~~~~~~~~~~~~l~~~l 254 (404)
..+++.|+||+++|.+|++++|||+||..||..|+.. ...||+||..+.......+..+.+.|
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i 78 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHH
Confidence 3577899999999999999999999999999998654 34899999988654344554454444
No 98
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.89 E-value=1.6e-10 Score=88.22 Aligned_cols=50 Identities=24% Similarity=0.688 Sum_probs=44.2
Q ss_pred cccccCCCcccccccccccCcEEccCCCc-ccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 14 EPEKISHSFRCCICLDLLYKPIVLSCGHI-SCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 14 ~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~-fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
..+.+.+.+.|+||++.+.+|++++|||+ ||..|+..| ..||+||+.+..
T Consensus 17 ~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 17 QLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred HHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 35667788999999999999999999999 999999876 469999998874
No 99
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=3e-10 Score=85.36 Aligned_cols=48 Identities=21% Similarity=0.564 Sum_probs=43.7
Q ss_pred ccceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
.+.+.|+||++.+.+ ++++|||.||..|+..|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 456789999999999 999999999999999998888999999998754
No 100
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.88 E-value=9.5e-10 Score=84.80 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=40.8
Q ss_pred cccceeeeecccCcc--Cceecc--cCCcchHHhhcccc-cccCCCccCCcccCC
Q 039128 192 SIVDVLCTACKQLLI--HPVVLN--CGHVYCETCIITPT-VQQLKCEVCQCLNPN 241 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~--~p~~l~--CgH~fC~~Cl~~~~-~~~~~CP~Cr~~~~~ 241 (404)
.++++.||||++.+. +++.++ |||+||..|+..+. .....||.||+.+..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 367789999999884 455655 99999999999875 456789999998854
No 101
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=3.3e-10 Score=86.59 Aligned_cols=52 Identities=23% Similarity=0.641 Sum_probs=44.3
Q ss_pred CcccccCCCcccccccccccCcEEccCCCc-ccHHHHHHhHcCCCCCCCCCCCcCCCCC
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIVLSCGHI-SCFWCVHRSMNGLRESHCPICRRPYNHF 70 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~-fC~~Ci~~~~~~~~~~~CP~CR~~~~~~ 70 (404)
...+.+.+.+.|+||++.+.+|++++|||. ||..|+... ..||+||..+...
T Consensus 17 ~~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 17 EQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITFK 69 (75)
T ss_dssp HHHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC------SBCTTTCCBCCCC
T ss_pred HHHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC------CCCccCCceecCc
Confidence 445667788999999999999999999999 999999652 4699999988753
No 102
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.83 E-value=6.7e-10 Score=84.71 Aligned_cols=46 Identities=28% Similarity=0.590 Sum_probs=41.2
Q ss_pred cccceeeeecccCccCceecccCCc-chHHhhcccccccCCCccCCcccCC
Q 039128 192 SIVDVLCTACKQLLIHPVVLNCGHV-YCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
..+++.|+||++.+.+|+.++|||+ ||..|+..+ ..||+||..+..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3566789999999999999999999 999999887 789999998754
No 103
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=6.2e-10 Score=84.89 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=43.3
Q ss_pred ccceeeeecccCccCc---eecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHP---VVLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p---~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
.++..|+||++.+.++ +.++|||.||..||..|+.....||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4667899999999887 678999999999999998878899999998743
No 104
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.82 E-value=2.7e-09 Score=87.99 Aligned_cols=50 Identities=22% Similarity=0.515 Sum_probs=41.4
Q ss_pred CCcccccccccccCcE------------------EccCCCcccHHHHHHhHcC---CCCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLYKPI------------------VLSCGHISCFWCVHRSMNG---LRESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv------------------~l~CGH~fC~~Ci~~~~~~---~~~~~CP~CR~~~~~ 69 (404)
.+..|+||++.|..|+ .++|||.||..||..|+.. .....||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4569999999997765 6899999999999999952 245679999998864
No 105
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.80 E-value=7.4e-10 Score=93.28 Aligned_cols=50 Identities=24% Similarity=0.523 Sum_probs=45.3
Q ss_pred ccceeeeecccCccCc-------eecccCCcchHHhhcccccccCCCccCCcccCCC
Q 039128 193 IVDVLCTACKQLLIHP-------VVLNCGHVYCETCIITPTVQQLKCEVCQCLNPNG 242 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p-------~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 242 (404)
.+++.|+||++.|.+| ++++|||+||..||.+|+.....||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 4678999999999999 8999999999999999988888999999988553
No 106
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.3e-09 Score=82.70 Aligned_cols=49 Identities=20% Similarity=0.424 Sum_probs=42.1
Q ss_pred ccceeeeecccCccCceec---ccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHPVVL---NCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l---~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
..+..|+||++.+.++..+ +|||.||..||..|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4567899999999887544 999999999999998777899999998743
No 107
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.74 E-value=3.1e-09 Score=87.57 Aligned_cols=47 Identities=19% Similarity=0.529 Sum_probs=40.1
Q ss_pred ceeeeecccCccCce------------------ecccCCcchHHhhcccc-----cccCCCccCCcccCC
Q 039128 195 DVLCTACKQLLIHPV------------------VLNCGHVYCETCIITPT-----VQQLKCEVCQCLNPN 241 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~------------------~l~CgH~fC~~Cl~~~~-----~~~~~CP~Cr~~~~~ 241 (404)
+..|+||++.|.+|. .++|||.||..||..|+ .....||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999999997765 67999999999999997 456799999998743
No 108
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=2.6e-09 Score=81.59 Aligned_cols=45 Identities=29% Similarity=0.620 Sum_probs=39.8
Q ss_pred ccceeeeecccCccCceecccCCc-chHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHV-YCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
.+++.|+||++.+.+|+.++|||. ||..|+.. ...||+||..+..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 456789999999999999999999 99999964 3689999998854
No 109
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=9.1e-09 Score=79.76 Aligned_cols=47 Identities=21% Similarity=0.584 Sum_probs=39.1
Q ss_pred CCcccccccccccC--------------cEEcc-CCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 20 HSFRCCICLDLLYK--------------PIVLS-CGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 20 ~~l~C~IC~~~l~~--------------Pv~l~-CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
++..|+||++.|.+ ++.++ |||.||..||.+|+. ....||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK--QNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT--TCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH--hCCCCCCcCCCcc
Confidence 56779999999876 45554 999999999999998 4468999999875
No 110
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.65 E-value=4e-09 Score=78.07 Aligned_cols=48 Identities=21% Similarity=0.393 Sum_probs=42.7
Q ss_pred ccceeeeecccCccCceec--ccCCc-chHHhhcccccccCCCccCCcccC
Q 039128 193 IVDVLCTACKQLLIHPVVL--NCGHV-YCETCIITPTVQQLKCEVCQCLNP 240 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l--~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~ 240 (404)
.++..|+||++.+.+++.+ ||||. ||..|+..+......||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4566899999999999987 99999 899999998877788999999874
No 111
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=9.7e-09 Score=79.61 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=39.5
Q ss_pred cceeeeecccCccC--------------ceec-ccCCcchHHhhcccccccCCCccCCcccC
Q 039128 194 VDVLCTACKQLLIH--------------PVVL-NCGHVYCETCIITPTVQQLKCEVCQCLNP 240 (404)
Q Consensus 194 ~~~~C~iC~~~~~~--------------p~~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 240 (404)
++..|+||++.|.+ ++++ +|||.|+..||.+|+.....||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 45679999998876 4455 49999999999999888889999999863
No 112
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.64 E-value=2.7e-09 Score=82.42 Aligned_cols=51 Identities=25% Similarity=0.693 Sum_probs=43.9
Q ss_pred CcccccCCCcccccccccccCcEEccCCCc-ccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 13 AEPEKISHSFRCCICLDLLYKPIVLSCGHI-SCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~Pv~l~CGH~-fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
...+.+.+...|+||++.+.+|++++|||. ||..|+..++ .||+||..+..
T Consensus 10 ~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~------~CP~Cr~~i~~ 61 (79)
T 2yho_A 10 EKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ------SCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS------BCTTTCCBCCE
T ss_pred HHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC------cCCCCCchhhC
Confidence 345667778999999999999999999999 9999997652 69999999874
No 113
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.62 E-value=1.6e-08 Score=74.81 Aligned_cols=48 Identities=29% Similarity=0.754 Sum_probs=42.1
Q ss_pred CCcccccccccccCcEEc--cCCCc-ccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLYKPIVL--SCGHI-SCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l--~CGH~-fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
+...|+||++...+++++ +|||. ||..|+..++. ....||+||+.+..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK--RNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH--TTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH--cCCcCCCcCcchhc
Confidence 557899999999999987 99999 89999999887 45679999998864
No 114
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.60 E-value=7.3e-09 Score=76.39 Aligned_cols=48 Identities=17% Similarity=0.366 Sum_probs=42.1
Q ss_pred ccceeeeecccCccCceec--ccCCc-chHHhhcccccccCCCccCCcccC
Q 039128 193 IVDVLCTACKQLLIHPVVL--NCGHV-YCETCIITPTVQQLKCEVCQCLNP 240 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l--~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~ 240 (404)
.....|+||++.+.+++++ ||||. ||..|+..+......||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3456799999999999888 99998 999999998766789999999874
No 115
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=3.1e-08 Score=74.13 Aligned_cols=45 Identities=29% Similarity=0.656 Sum_probs=39.6
Q ss_pred CCCcccccccccccCcEEccCCCc-ccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 19 SHSFRCCICLDLLYKPIVLSCGHI-SCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~CGH~-fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
.+...|.||++...++++++|||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc------CCCCCCCCcchhc
Confidence 357899999999999999999999 99999985 2469999998875
No 116
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.57 E-value=2.4e-08 Score=73.56 Aligned_cols=48 Identities=25% Similarity=0.669 Sum_probs=41.5
Q ss_pred CCcccccccccccCcEEc--cCCCc-ccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLYKPIVL--SCGHI-SCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l--~CGH~-fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
....|+||++...+++++ +|||. ||..|+..++. ....||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK--AGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH--TTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH--hCCcCCCcCchhhc
Confidence 356899999999999887 99998 99999999886 34679999998864
No 117
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.55 E-value=4.5e-08 Score=79.81 Aligned_cols=47 Identities=23% Similarity=0.537 Sum_probs=39.9
Q ss_pred CCcccccccccccCc------------------EEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 20 HSFRCCICLDLLYKP------------------IVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 20 ~~l~C~IC~~~l~~P------------------v~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
+...|+||++.|..+ +.++|||.||..||..|+. ....||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT--TCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH--cCCcCcCCCCcce
Confidence 567899999998865 4478999999999999998 4677999999854
No 118
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.55 E-value=1.3e-08 Score=78.51 Aligned_cols=45 Identities=29% Similarity=0.671 Sum_probs=39.6
Q ss_pred ccceeeeecccCccCceecccCCc-chHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHV-YCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
.++..|+||++.+.+++.+||||. ||..|+..+ ..||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 456789999999999999999999 999999876 389999998743
No 119
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2.7e-08 Score=74.50 Aligned_cols=45 Identities=22% Similarity=0.580 Sum_probs=39.5
Q ss_pred ccceeeeecccCccCceecccCCc-chHHhhcccccccCCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCGHV-YCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
.++..|+||++.+.+++.+||||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 456789999999999999999999 99999974 3689999998744
No 120
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.54 E-value=3.2e-08 Score=97.93 Aligned_cols=51 Identities=25% Similarity=0.495 Sum_probs=44.0
Q ss_pred cCCCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 18 ISHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 18 l~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
......|+||++.+.+|+.++|||+||..|+..|+.. ....||+||..+..
T Consensus 329 ~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKG 379 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred cCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 3445899999999999999999999999999998873 35679999998864
No 121
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.46 E-value=3.7e-08 Score=97.48 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=42.9
Q ss_pred cceeeeecccCccCceecccCCcchHHhhccccc-ccCCCccCCcccCC
Q 039128 194 VDVLCTACKQLLIHPVVLNCGHVYCETCIITPTV-QQLKCEVCQCLNPN 241 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~-~~~~CP~Cr~~~~~ 241 (404)
....|+||++.+.+|+.++|||+||..|+..|.. ....||+||..+..
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3478999999999999999999999999999876 67899999998743
No 122
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.44 E-value=6e-08 Score=70.98 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=41.4
Q ss_pred CcccccccccccCcEEc-cCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 21 SFRCCICLDLLYKPIVL-SCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 21 ~l~C~IC~~~l~~Pv~l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
.+.|+|+++++.+||++ ++||+|++.||.+|+... ..||+.+.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCCCh
Confidence 57899999999999999 899999999999999843 359999998863
No 123
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.44 E-value=6.8e-08 Score=78.78 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=40.2
Q ss_pred cceeeeecccCccCc------------------eecccCCcchHHhhcccccccCCCccCCccc
Q 039128 194 VDVLCTACKQLLIHP------------------VVLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p------------------~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
++..|+||++.|.++ +.++|||.|+..||..|+.....||+||+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 456799999998866 3478999999999999998889999999975
No 124
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=7.1e-08 Score=76.73 Aligned_cols=46 Identities=15% Similarity=0.384 Sum_probs=37.9
Q ss_pred ccceeeeecccCccCceec---ccCCcchHHhhccccc--------ccCCCcc--CCcc
Q 039128 193 IVDVLCTACKQLLIHPVVL---NCGHVYCETCIITPTV--------QQLKCEV--CQCL 238 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l---~CgH~fC~~Cl~~~~~--------~~~~CP~--Cr~~ 238 (404)
.+.++|+||++.+..|.++ +|||+||..|+..++. ....||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3567899999999988654 6999999999999742 2368999 9887
No 125
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.38 E-value=4.4e-08 Score=96.11 Aligned_cols=49 Identities=27% Similarity=0.708 Sum_probs=43.6
Q ss_pred ccccCCCcccccccccccCcEEccCCCc-ccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 15 PEKISHSFRCCICLDLLYKPIVLSCGHI-SCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l~CGH~-fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
.+.+.+.+.|+||++.+.+||+++|||+ ||..|+..+ ..||+||..+..
T Consensus 289 ~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 289 LRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred HHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 4566788999999999999999999999 999999875 469999998874
No 126
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=5.4e-08 Score=77.40 Aligned_cols=47 Identities=26% Similarity=0.535 Sum_probs=38.7
Q ss_pred CCcccccccccccCcEEc---cCCCcccHHHHHHhHcCC------CCCCCCC--CCcC
Q 039128 20 HSFRCCICLDLLYKPIVL---SCGHISCFWCVHRSMNGL------RESHCPI--CRRP 66 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l---~CGH~fC~~Ci~~~~~~~------~~~~CP~--CR~~ 66 (404)
+.+.|+||++.+..|+.+ +|||.||..||..++... ....||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 468899999999888654 699999999999998732 2357999 9987
No 127
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.30 E-value=1.2e-07 Score=92.93 Aligned_cols=46 Identities=24% Similarity=0.644 Sum_probs=41.2
Q ss_pred cccceeeeecccCccCceecccCCc-chHHhhcccccccCCCccCCcccCC
Q 039128 192 SIVDVLCTACKQLLIHPVVLNCGHV-YCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
..+++.|+||++.+.+|+.+||||+ ||..|+..+ ..||+||..+..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 3567899999999999999999999 999999877 689999998743
No 128
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.30 E-value=7.8e-08 Score=70.39 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=42.0
Q ss_pred ceeeeecccCccCceec-ccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 195 DVLCTACKQLLIHPVVL-NCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
.+.|+|+++++.+||++ ++||+|++.||.+|+.....||+.++++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 46899999999999999 899999999999998766779999998754
No 129
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=5.8e-07 Score=69.40 Aligned_cols=50 Identities=20% Similarity=0.446 Sum_probs=42.3
Q ss_pred CCCcccccccccc--cCcEEccCC-----CcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 19 SHSFRCCICLDLL--YKPIVLSCG-----HISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 19 ~~~l~C~IC~~~l--~~Pv~l~CG-----H~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.+...|.||++.+ .++++++|+ |.|+..||.+|+...+...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3467899999877 468889996 9999999999998655568999999886
No 130
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.18 E-value=2.3e-07 Score=76.90 Aligned_cols=47 Identities=23% Similarity=0.583 Sum_probs=0.9
Q ss_pred CCcccccccccccCc-----------------EE-ccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 20 HSFRCCICLDLLYKP-----------------IV-LSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 20 ~~l~C~IC~~~l~~P-----------------v~-l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
+...|+||++.|.++ ++ ++|||.|+..||..|+. ....||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~--~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWE 111 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH--cCCcCCCCCCeee
Confidence 346899999998763 22 58999999999999998 4567999999753
No 131
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.12 E-value=3.6e-07 Score=75.65 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=0.9
Q ss_pred cceeeeecccCccCce------------------ecccCCcchHHhhcccccccCCCccCCccc
Q 039128 194 VDVLCTACKQLLIHPV------------------VLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~------------------~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
.+..|+||++.|.++. .++|+|.|+..||..|+.....||+||+.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 3457999999997642 258999999999999998888999999975
No 132
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=9.6e-06 Score=61.45 Aligned_cols=49 Identities=27% Similarity=0.514 Sum_probs=41.0
Q ss_pred CCcccccccccccCcEEc-cCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 20 HSFRCCICLDLLYKPIVL-SCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
....|.||++++..-+.. .|+|.|...||.+|++......||+||....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 457899999999765554 6999999999999998655578999998875
No 133
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=2.2e-06 Score=66.11 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=39.7
Q ss_pred ccceeeeecccCc--cCceecccC-----CcchHHhhccccccc--CCCccCCcccC
Q 039128 193 IVDVLCTACKQLL--IHPVVLNCG-----HVYCETCIITPTVQQ--LKCEVCQCLNP 240 (404)
Q Consensus 193 ~~~~~C~iC~~~~--~~p~~l~Cg-----H~fC~~Cl~~~~~~~--~~CP~Cr~~~~ 240 (404)
.++..|.||++.+ .+++++||. |.|+..||.+|+... ..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 4456799999877 467889996 999999999997543 68999999874
No 134
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.55 E-value=7.2e-05 Score=56.58 Aligned_cols=48 Identities=23% Similarity=0.486 Sum_probs=38.6
Q ss_pred cceeeeecccCccCcee-cccCCcchHHhhccccccc--CCCccCCcccCC
Q 039128 194 VDVLCTACKQLLIHPVV-LNCGHVYCETCIITPTVQQ--LKCEVCQCLNPN 241 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~~-l~CgH~fC~~Cl~~~~~~~--~~CP~Cr~~~~~ 241 (404)
....|.||++.+..-.. ..|+|.|...||.+|+... ..||+||.....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 44579999999974332 3799999999999998755 899999998643
No 135
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.49 E-value=5.4e-05 Score=54.92 Aligned_cols=50 Identities=26% Similarity=0.434 Sum_probs=41.0
Q ss_pred CCCcccccccccccCcEEccCC--C---cccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 19 SHSFRCCICLDLLYKPIVLSCG--H---ISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~CG--H---~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.+...|.||++...++..+||. + .|+..|+.+|+...+...||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3467899999887777778854 4 799999999998656778999999875
No 136
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.12 E-value=0.0003 Score=55.68 Aligned_cols=46 Identities=22% Similarity=0.507 Sum_probs=36.3
Q ss_pred cccccccccc-CcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 23 RCCICLDLLY-KPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 23 ~C~IC~~~l~-~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
.|++|.-.+. -...++|.|.||..|+..|... +...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhc-cCCCCcCcCCeeee
Confidence 5888877654 3456899999999999998763 45679999998863
No 137
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.91 E-value=0.00021 Score=68.98 Aligned_cols=51 Identities=24% Similarity=0.609 Sum_probs=39.5
Q ss_pred cCCCcccccccccccC----cEE----ccCCCcccHHHHHHhHcCCCC---------CCCCCCCcCCC
Q 039128 18 ISHSFRCCICLDLLYK----PIV----LSCGHISCFWCVHRSMNGLRE---------SHCPICRRPYN 68 (404)
Q Consensus 18 l~~~l~C~IC~~~l~~----Pv~----l~CGH~fC~~Ci~~~~~~~~~---------~~CP~CR~~~~ 68 (404)
-.....|+||++.+.+ |.. ..|||.|+..|+.+|++.... ..||.||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3467899999998865 422 369999999999999974211 35999999876
No 138
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.88 E-value=0.00028 Score=55.85 Aligned_cols=44 Identities=23% Similarity=0.522 Sum_probs=34.9
Q ss_pred eeeecccCccCc-eecccCCcchHHhhcccc-cccCCCccCCcccC
Q 039128 197 LCTACKQLLIHP-VVLNCGHVYCETCIITPT-VQQLKCEVCQCLNP 240 (404)
Q Consensus 197 ~C~iC~~~~~~p-~~l~CgH~fC~~Cl~~~~-~~~~~CP~Cr~~~~ 240 (404)
.|++|.-.+..- ..+||.|+||.+|+..+. +....||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 477887666543 467999999999999875 56789999999763
No 139
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.88 E-value=0.00043 Score=50.08 Aligned_cols=48 Identities=19% Similarity=0.385 Sum_probs=38.9
Q ss_pred ccceeeeecccCccCceecccC--C---cchHHhhccccc--ccCCCccCCcccC
Q 039128 193 IVDVLCTACKQLLIHPVVLNCG--H---VYCETCIITPTV--QQLKCEVCQCLNP 240 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~Cg--H---~fC~~Cl~~~~~--~~~~CP~Cr~~~~ 240 (404)
++...|.||++...++..+||. + .|...||.+|+. ....||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456899999887788888865 4 899999999964 4689999998864
No 140
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.04 E-value=0.00078 Score=65.11 Aligned_cols=49 Identities=14% Similarity=0.314 Sum_probs=38.2
Q ss_pred ccceeeeecccCccC----ce----ecccCCcchHHhhccccccc-----------CCCccCCcccCC
Q 039128 193 IVDVLCTACKQLLIH----PV----VLNCGHVYCETCIITPTVQQ-----------LKCEVCQCLNPN 241 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~----p~----~l~CgH~fC~~Cl~~~~~~~-----------~~CP~Cr~~~~~ 241 (404)
+....|+||+..+.+ |. ..+|||.|...||.+|+... ..||.||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456789999999876 32 13799999999999996421 479999998754
No 141
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.78 E-value=0.0091 Score=65.01 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=57.6
Q ss_pred ccccCCCcccccccccccCcEEccCC-CcccHHHHHHhHcCCCCCCCCCCCcCCCCC-CchhHHHHHHHHHHchH
Q 039128 15 PEKISHSFRCCICLDLLYKPIVLSCG-HISCFWCVHRSMNGLRESHCPICRRPYNHF-PSICVMLHRLLLKMYPI 87 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~Pv~l~CG-H~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~-~~~~~~l~~~l~~~~~~ 87 (404)
..++.+++.|||-++++.+||+++-| ++|=+..|.+|+.. ...||.-|.++... ...+..++..+..|...
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~ 957 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQ 957 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCcccccccHHHHHHHHHHHHH
Confidence 46678899999999999999999998 69999999999984 55799999998742 22345677777777553
No 142
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.55 E-value=0.0055 Score=48.59 Aligned_cols=32 Identities=16% Similarity=0.397 Sum_probs=27.8
Q ss_pred CCccccccccc-ccCcEE--ccCCCcccHHHHHHh
Q 039128 20 HSFRCCICLDL-LYKPIV--LSCGHISCFWCVHRS 51 (404)
Q Consensus 20 ~~l~C~IC~~~-l~~Pv~--l~CGH~fC~~Ci~~~ 51 (404)
+++.|+||.+. +.+||. +.|||+||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 46899999974 788888 899999999999873
No 143
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.54 E-value=0.011 Score=54.67 Aligned_cols=50 Identities=28% Similarity=0.535 Sum_probs=42.3
Q ss_pred CCcccccccccccCcEEcc-CCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLYKPIVLS-CGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l~-CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
....|.||.+++..-+..+ |+|.|+..|+..|++..+...||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 3678999999998777765 9999999999999986566789999997653
No 144
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.46 E-value=0.0033 Score=49.89 Aligned_cols=31 Identities=32% Similarity=0.770 Sum_probs=26.9
Q ss_pred cceeeeeccc-CccCcee--cccCCcchHHhhcc
Q 039128 194 VDVLCTACKQ-LLIHPVV--LNCGHVYCETCIIT 224 (404)
Q Consensus 194 ~~~~C~iC~~-~~~~p~~--l~CgH~fC~~Cl~~ 224 (404)
+++.|+||.+ ++.+|+. +.|+|+||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 4578999996 4778887 89999999999987
No 145
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=94.83 E-value=0.011 Score=64.37 Aligned_cols=66 Identities=12% Similarity=-0.090 Sum_probs=58.9
Q ss_pred ccceeeeecccCccCceecccC-CcchHHhhcccccccCCCccCCcccCCCCCcchHHHHHHHHHHh
Q 039128 193 IVDVLCTACKQLLIHPVVLNCG-HVYCETCIITPTVQQLKCEVCQCLNPNGFPKVCLELDQFLEEQF 258 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~Cg-H~fC~~Cl~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~~~~ 258 (404)
-+++.|||-.+++.|||+++-| ++|=+..|.+|+.....||.=|.++......+|..|++.|+.+.
T Consensus 889 P~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFK 955 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHH
Confidence 3578999999999999999998 69999999999877889999999997767789999999997665
No 146
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=94.29 E-value=0.0026 Score=48.47 Aligned_cols=44 Identities=16% Similarity=0.075 Sum_probs=36.3
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhh-cCccccccCC
Q 039128 310 VGVGCDSCGTGQFCLALKLYLTITWMLLYAAYRL-LDRDEDKICH 353 (404)
Q Consensus 310 ~~v~C~~C~~~p~~~a~k~~~~~~~~~~~~~~~~-~~~~~~~~~~ 353 (404)
..|.||.|.-.|...|+|.|+.|..+||+.|++. +.+......|
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H 73 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGH 73 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSC
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCC
Confidence 4689999986665679999999999999999997 6555566666
No 147
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=91.95 E-value=0.091 Score=48.43 Aligned_cols=50 Identities=24% Similarity=0.525 Sum_probs=38.4
Q ss_pred ceeeeecccCccCcee-cccCCcchHHhhcccccc--cCCCccCCcccCCCCC
Q 039128 195 DVLCTACKQLLIHPVV-LNCGHVYCETCIITPTVQ--QLKCEVCQCLNPNGFP 244 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~-l~CgH~fC~~Cl~~~~~~--~~~CP~Cr~~~~~~~~ 244 (404)
-..|.+|.+++..-.. -.|+|.|...|+..|+.. ...||.|+...+...|
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 4579999999885432 249999999999998653 4589999998655444
No 148
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=89.93 E-value=0.22 Score=38.69 Aligned_cols=50 Identities=18% Similarity=0.468 Sum_probs=40.3
Q ss_pred ccccceeeeecccCccCceeccc-CCcchHHhhcccccccCCCccCCcccCCC
Q 039128 191 ISIVDVLCTACKQLLIHPVVLNC-GHVYCETCIITPTVQQLKCEVCQCLNPNG 242 (404)
Q Consensus 191 ~~~~~~~C~iC~~~~~~p~~l~C-gH~fC~~Cl~~~~~~~~~CP~Cr~~~~~~ 242 (404)
..-+.+.|..|....+ -.+.| .|.+|..|+...+..+..||+|..+++..
T Consensus 24 s~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 24 THLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cccCcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3356678999986665 45566 69999999999999999999999998664
No 149
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=86.65 E-value=0.37 Score=36.28 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=29.2
Q ss_pred CCCcccccccccccCcEEcc----CCCcccHHHHHHhHcCC
Q 039128 19 SHSFRCCICLDLLYKPIVLS----CGHISCFWCVHRSMNGL 55 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~----CGH~fC~~Ci~~~~~~~ 55 (404)
...+.|.+|.+.|.+--... =+|.||+-|-..+++.+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 56799999999998754433 37999999998887743
No 150
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=82.19 E-value=0.98 Score=44.05 Aligned_cols=52 Identities=23% Similarity=0.465 Sum_probs=39.3
Q ss_pred ccCCCcccccccccccCcEEc-cCCCcccHH--HHHHhHcCCCCCCCCCCCcCCC
Q 039128 17 KISHSFRCCICLDLLYKPIVL-SCGHISCFW--CVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 17 ~l~~~l~C~IC~~~l~~Pv~l-~CGH~fC~~--Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.+.-.+.|||-...+..|+.. .|.|.-|+. -+...........||+|.+.+.
T Consensus 245 s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 245 STIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 345569999999999999985 599995544 4444444457788999998775
No 151
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=79.67 E-value=1.3 Score=42.93 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=39.3
Q ss_pred ccCCCcccccccccccCcEEc-cCCCccc--HHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 17 KISHSFRCCICLDLLYKPIVL-SCGHISC--FWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 17 ~l~~~l~C~IC~~~l~~Pv~l-~CGH~fC--~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.+.-.+.|||-...+..|+.. .|.|.-| ..-+.......+...||+|.+.+.
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 345568999999999999985 5999954 444444444457788999999876
No 152
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=76.57 E-value=0.065 Score=42.47 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=31.7
Q ss_pred CCccccccCCCCCCcHHHHHHHHHHHH-HHHHHHHHHhhcC
Q 039128 306 SKVHVGVGCDSCGTGQFCLALKLYLTI-TWMLLYAAYRLLD 345 (404)
Q Consensus 306 ~~~h~~v~C~~C~~~p~~~a~k~~~~~-~~~~~~~~~~~~~ 345 (404)
...|.++.||.|+..||.-..-+|..| .+.+|+.|+..-.
T Consensus 26 ~~~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~ 66 (98)
T 2dip_A 26 LDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC 66 (98)
T ss_dssp CSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS
T ss_pred ccccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC
Confidence 348999999999999987555556666 4889999988764
No 153
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=73.81 E-value=1.5 Score=42.65 Aligned_cols=63 Identities=21% Similarity=0.409 Sum_probs=44.9
Q ss_pred ccceeeeecccCccCcee-cccCCcchHHh--hccc--ccccCCCccCCcccCCCCCcchHHHHHHHH
Q 039128 193 IVDVLCTACKQLLIHPVV-LNCGHVYCETC--IITP--TVQQLKCEVCQCLNPNGFPKVCLELDQFLE 255 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~-l~CgH~fC~~C--l~~~--~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~ 255 (404)
.-.+.||+-...+..|+. ..|.|.-|.+- +... ....+.||+|.+.+....+.++..+.++|.
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 345789999999999985 47999855432 2221 256789999999876555677776766663
No 154
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=69.99 E-value=2.2 Score=41.45 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=44.9
Q ss_pred ccceeeeecccCccCcee-cccCCcchHHh--hccc--ccccCCCccCCcccCCCCCcchHHHHHHHH
Q 039128 193 IVDVLCTACKQLLIHPVV-LNCGHVYCETC--IITP--TVQQLKCEVCQCLNPNGFPKVCLELDQFLE 255 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~-l~CgH~fC~~C--l~~~--~~~~~~CP~Cr~~~~~~~~~~~~~l~~~l~ 255 (404)
.-.+.||+-...+..|+. ..|.|.-|.+- +... ....+.||+|.+.+....+.++..+.+++.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 345789999999999985 47999855432 2221 246789999999886555677777767664
No 155
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=69.26 E-value=1.7 Score=33.78 Aligned_cols=46 Identities=24% Similarity=0.582 Sum_probs=34.1
Q ss_pred CCcccccccccccCcEEccC-CCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLYKPIVLSC-GHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l~C-GH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
--+.|..|--.... .+.| -|.+|..|+...+. .+..||+|..++..
T Consensus 27 G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~--~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLS--VSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCS--SSSEETTTTEECCC
T ss_pred CcccChhhccccCC--eeeecchhhHHHHHHHHHh--hccCCcccCCcCCc
Confidence 34667777654443 3445 59999999998777 67789999998874
No 156
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=68.56 E-value=2.9 Score=31.46 Aligned_cols=34 Identities=24% Similarity=0.566 Sum_probs=27.5
Q ss_pred ccceeeeecccCccCceeccc----CCcchHHhhcccc
Q 039128 193 IVDVLCTACKQLLIHPVVLNC----GHVYCETCIITPT 226 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~C----gH~fC~~Cl~~~~ 226 (404)
...+.|.+|.+-|.+.-.+.| +|.||..|-..++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sI 50 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESI 50 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHH
Confidence 356789999999988765555 6999999998863
No 157
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=56.49 E-value=6.8 Score=27.73 Aligned_cols=40 Identities=25% Similarity=0.574 Sum_probs=30.2
Q ss_pred eeeeecccCccCcee---cccCCcchHHhhcccccccCCCccC
Q 039128 196 VLCTACKQLLIHPVV---LNCGHVYCETCIITPTVQQLKCEVC 235 (404)
Q Consensus 196 ~~C~iC~~~~~~p~~---l~CgH~fC~~Cl~~~~~~~~~CP~C 235 (404)
..|..|...|.+..+ ..|++.||.+|=.=..+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 359999998876553 3699999999965445666789988
No 158
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=54.19 E-value=16 Score=26.23 Aligned_cols=50 Identities=16% Similarity=0.308 Sum_probs=33.8
Q ss_pred CCCcccccccccccCcEEc-cCCCcccHHHHHHhHcCC--CCCCCCCCCcCCCC
Q 039128 19 SHSFRCCICLDLLYKPIVL-SCGHISCFWCVHRSMNGL--RESHCPICRRPYNH 69 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l-~CGH~fC~~Ci~~~~~~~--~~~~CP~CR~~~~~ 69 (404)
.....|.||.+- .+-+.. .|...|+..|+...+... +...||.|......
T Consensus 10 ~~~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 10 APGARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CTTCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 345679999864 233333 599999999996555432 55789999875443
No 159
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=52.51 E-value=0.71 Score=34.89 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=0.9
Q ss_pred CccCCcccCCCCCcchHHHHHHHH-HHhHHHHHHH
Q 039128 232 CEVCQCLNPNGFPKVCLELDQFLE-EQFSKEYALR 265 (404)
Q Consensus 232 CP~Cr~~~~~~~~~~~~~l~~~l~-~~~~~~~~~r 265 (404)
||.|.+.+.+ .-.....|+..|. .-+|.+|+..
T Consensus 1 ~~~c~ks~~d-m~~~~~~lD~~ia~~pmP~~y~~~ 34 (79)
T 2k2d_A 1 GSHMMHSALD-MTRYWRQLDDEVAQTPMPSEYQNM 34 (79)
T ss_dssp ---------------------------------CC
T ss_pred CCcccccHHH-HHHHHHHHHHHHHhCCCCHHHhCC
Confidence 7889887643 2223445555554 4677777544
No 160
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=51.99 E-value=2.1 Score=26.87 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=8.7
Q ss_pred ceeeeecccCccCce
Q 039128 195 DVLCTACKQLLIHPV 209 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~ 209 (404)
.+.||+|+..|.++.
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 356666666655543
No 161
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=49.65 E-value=11 Score=28.62 Aligned_cols=44 Identities=20% Similarity=0.587 Sum_probs=31.2
Q ss_pred ccceeeeecccCccCceecc---cCCcchHHhhccc----------------ccccCCCccCCc
Q 039128 193 IVDVLCTACKQLLIHPVVLN---CGHVYCETCIITP----------------TVQQLKCEVCQC 237 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l~---CgH~fC~~Cl~~~----------------~~~~~~CP~Cr~ 237 (404)
..+..|.||...-. -..+| |+-+|...|+.+. ....+.||.|..
T Consensus 13 ~~D~~C~VC~~~t~-~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 13 VNDEMCDVCEVWTA-ESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCSCCCTTTCCCCS-SCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCcccCccccccc-cceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 35678999975443 33443 8999999999884 134678999944
No 162
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=48.96 E-value=18 Score=30.28 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=31.5
Q ss_pred CCCcccccccccccCcEE-ccCCCcccHHHHHHhHc---------CCCCCCCCCCCc
Q 039128 19 SHSFRCCICLDLLYKPIV-LSCGHISCFWCVHRSMN---------GLRESHCPICRR 65 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~-l~CGH~fC~~Ci~~~~~---------~~~~~~CP~CR~ 65 (404)
..+..|.+|.+-=. -+. -.|-.+||..||...+. ..+...||.|+.
T Consensus 61 g~~d~C~vC~~GG~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34567888876322 112 25889999999986552 457788999974
No 163
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=48.38 E-value=14 Score=26.51 Aligned_cols=42 Identities=19% Similarity=0.452 Sum_probs=29.9
Q ss_pred ceeeeecccCccCceec--ccCCcchHHhhcccc----cccCCCccCCcc
Q 039128 195 DVLCTACKQLLIHPVVL--NCGHVYCETCIITPT----VQQLKCEVCQCL 238 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l--~CgH~fC~~Cl~~~~----~~~~~CP~Cr~~ 238 (404)
...|.||.+-- -+++ .|...|...|+...+ ...+.||.|...
T Consensus 12 ~~~C~vC~~~~--~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGT--DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCT--TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCC--eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 44699998632 2322 689999999997642 456899999764
No 164
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=45.86 E-value=23 Score=27.07 Aligned_cols=47 Identities=28% Similarity=0.572 Sum_probs=34.6
Q ss_pred Cccccccccccc-----CcEE--ccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 21 SFRCCICLDLLY-----KPIV--LSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 21 ~l~C~IC~~~l~-----~Pv~--l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.-.|.||.+.+- ++.+ -.|+-..|+.|...- +..+...||.|+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE-rkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE-RREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH-HHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH-HhccCccccccCCccc
Confidence 468999998752 2322 358889999999654 4346778999999885
No 165
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=45.66 E-value=7.7 Score=32.53 Aligned_cols=44 Identities=23% Similarity=0.495 Sum_probs=29.6
Q ss_pred cceeeeecccCccCceecccCCcchHHhhcccc-----------cccCCCccCCc
Q 039128 194 VDVLCTACKQLLIHPVVLNCGHVYCETCIITPT-----------VQQLKCEVCQC 237 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~-----------~~~~~CP~Cr~ 237 (404)
.+..|.+|.+-=.--.--.|-.+||..||...+ ...+.||.|+.
T Consensus 62 ~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345688887633210112699999999998642 35789999964
No 166
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=45.39 E-value=11 Score=29.78 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=19.8
Q ss_pred cCceecccCCcchHHhhcccccccCCCccCCccc
Q 039128 206 IHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 206 ~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
..+.-..||++| .........||.|+..-
T Consensus 66 ~p~~C~~CG~~F-----~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 66 KPAQCRKCGFVF-----KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp CCCBBTTTCCBC-----CCCSSCCSSCSSSCCCC
T ss_pred ECcChhhCcCee-----cccCCCCCCCcCCCCCc
Confidence 344556899999 22344557899998863
No 167
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=45.34 E-value=3.3 Score=33.81 Aligned_cols=45 Identities=22% Similarity=0.568 Sum_probs=29.5
Q ss_pred ceeeeecccCccCce----ecccCCcchHHhhcccccccCCCccCCccc
Q 039128 195 DVLCTACKQLLIHPV----VLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~----~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
...|..|...|.--. --.||..||..|..........|-.|-..+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 357999998886321 126999999999877655566687775543
No 168
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.58 E-value=8.5 Score=27.18 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=22.2
Q ss_pred eeeeecccCccCc-----eecc---cCCcchHHhhcccccc
Q 039128 196 VLCTACKQLLIHP-----VVLN---CGHVYCETCIITPTVQ 228 (404)
Q Consensus 196 ~~C~iC~~~~~~p-----~~l~---CgH~fC~~Cl~~~~~~ 228 (404)
-.||-|...+... ++-. |++.||..|...+...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 3577777666532 2323 8999999999887543
No 169
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.60 E-value=0.27 Score=35.56 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=27.4
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHH-HHHHHHHHHhhc
Q 039128 308 VHVGVGCDSCGTGQFCLALKLYLTI-TWMLLYAAYRLL 344 (404)
Q Consensus 308 ~h~~v~C~~C~~~p~~~a~k~~~~~-~~~~~~~~~~~~ 344 (404)
.|. +.||.|+..||....-+|..| .+.+|+.|+..-
T Consensus 9 ~H~-~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 9 FHP-VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp CSC-SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred eeC-CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 465 999999999987544555566 478999998764
No 170
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=42.34 E-value=9.1 Score=28.87 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=31.8
Q ss_pred cccCCccccccCCCCCCcHHHHHHHHHHHHH----HHHHHHHHhhc
Q 039128 303 DAHSKVHVGVGCDSCGTGQFCLALKLYLTIT----WMLLYAAYRLL 344 (404)
Q Consensus 303 ~~~~~~h~~v~C~~C~~~p~~~a~k~~~~~~----~~~~~~~~~~~ 344 (404)
.....+|.++.||.|++.||.-..=+|..|. +.+|+.|+..-
T Consensus 13 ~~~~~~H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g 58 (82)
T 2fc7_A 13 ESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCL 58 (82)
T ss_dssp STTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCC
T ss_pred cccCCeeCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCc
Confidence 3446789999999999999865444555664 78999998763
No 171
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=42.09 E-value=4.1 Score=30.78 Aligned_cols=39 Identities=26% Similarity=0.529 Sum_probs=24.1
Q ss_pred eeeeecccCccCceecccCCcchHHhhcccccccCCCccCCccc
Q 039128 196 VLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 196 ~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
..||.|...+..- =++.+|..|-..+.... .||.|.+++
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~a-fCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQA-LCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEEE-ECSSSCSCC
T ss_pred CCCCCCCCccccC----CCceECccccccCCCcc-cCcchhhHH
Confidence 5688888766421 12444777766654444 688887765
No 172
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.58 E-value=10 Score=27.67 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=32.9
Q ss_pred CCCcccccccccccC-cEE-c-cCCCcccHHHHHHhHcCC--CCCCCCCCCcCCC
Q 039128 19 SHSFRCCICLDLLYK-PIV-L-SCGHISCFWCVHRSMNGL--RESHCPICRRPYN 68 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~-Pv~-l-~CGH~fC~~Ci~~~~~~~--~~~~CP~CR~~~~ 68 (404)
.+...|+||...... .++ . .|.--|+..|+.-..... ....||.|+....
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 455789999886543 233 2 488889999985433322 4677999966543
No 173
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=39.54 E-value=14 Score=26.01 Aligned_cols=43 Identities=23% Similarity=0.573 Sum_probs=29.9
Q ss_pred cceeeeecccCccCceec--ccCCcchHHhhcccc----cccCCCccCCcc
Q 039128 194 VDVLCTACKQLLIHPVVL--NCGHVYCETCIITPT----VQQLKCEVCQCL 238 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~~l--~CgH~fC~~Cl~~~~----~~~~~CP~Cr~~ 238 (404)
++..|.||.+. .-+++ .|...|...|+...+ ...+.||.|...
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45679999863 22222 588889999998642 456889999764
No 174
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=39.14 E-value=22 Score=24.93 Aligned_cols=44 Identities=20% Similarity=0.482 Sum_probs=31.2
Q ss_pred ccceeeeecccCccCceec--ccCCcchHHhhccc----ccccCCCccCCcc
Q 039128 193 IVDVLCTACKQLLIHPVVL--NCGHVYCETCIITP----TVQQLKCEVCQCL 238 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l--~CgH~fC~~Cl~~~----~~~~~~CP~Cr~~ 238 (404)
..+..|.+|.+. .-+++ .|...|...|+... ....+.||.|...
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 345679999873 22332 68889999999874 2467899999753
No 175
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.31 E-value=19 Score=28.40 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=21.4
Q ss_pred cCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCCCC
Q 039128 32 YKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNHFP 71 (404)
Q Consensus 32 ~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~~~ 71 (404)
..|....||+.|+ . .......||.|+..-...|
T Consensus 66 ~p~~C~~CG~~F~-----~--~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 66 KPAQCRKCGFVFK-----A--EINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp CCCBBTTTCCBCC-----C--CSSCCSSCSSSCCCCBCCC
T ss_pred ECcChhhCcCeec-----c--cCCCCCCCcCCCCCccCCc
Confidence 4555678999992 1 1124567999998765443
No 176
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=37.24 E-value=25 Score=23.40 Aligned_cols=42 Identities=17% Similarity=0.489 Sum_probs=26.8
Q ss_pred eeeecccCccCceec---ccCCcchHHhhcccc----cccCCCccCCcc
Q 039128 197 LCTACKQLLIHPVVL---NCGHVYCETCIITPT----VQQLKCEVCQCL 238 (404)
Q Consensus 197 ~C~iC~~~~~~p~~l---~CgH~fC~~Cl~~~~----~~~~~CP~Cr~~ 238 (404)
.|.||...-..-.++ .|...|...|+...+ ...+.||.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 366776543221222 588889999997532 356789999653
No 177
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=37.10 E-value=9 Score=28.59 Aligned_cols=20 Identities=25% Similarity=0.765 Sum_probs=15.8
Q ss_pred ccCCcchHHhhcccccccCCCc
Q 039128 212 NCGHVYCETCIITPTVQQLKCE 233 (404)
Q Consensus 212 ~CgH~fC~~Cl~~~~~~~~~CP 233 (404)
.||+.||..|...|.. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 5999999999988755 4453
No 178
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.64 E-value=5.3 Score=31.13 Aligned_cols=40 Identities=23% Similarity=0.549 Sum_probs=27.4
Q ss_pred ceeeeecccCccCceecccCCcchHHhhcccccccCCCccCCccc
Q 039128 195 DVLCTACKQLLIHPVVLNCGHVYCETCIITPTVQQLKCEVCQCLN 239 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~ 239 (404)
+..||+|...+.. .=++.+|..|-..+. ....||.|.+++
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~f~-~~a~CPdC~q~L 71 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEFIE-MKALCPDCHQPL 71 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEEE-EEEECTTTCSBC
T ss_pred cccCccCCCccee----cCCEEECccccchhh-ccccCcchhhHH
Confidence 3689999977653 124445888877653 344699998876
No 179
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.63 E-value=22 Score=28.37 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=37.1
Q ss_pred CCccccccccccc---CcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLY---KPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~---~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
+.|.|..|...|. ......=|..||..|..+.+. ....|..|..++..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~--~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG--NSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC--CCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC--CCCccccCCCCcCc
Confidence 4489999999986 345566789999999988765 22369999998874
No 180
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=36.17 E-value=23 Score=27.09 Aligned_cols=44 Identities=18% Similarity=0.587 Sum_probs=31.2
Q ss_pred ccceeeeecccCccCceec--ccCCcchHHhhcccc----cccCCCccCCcc
Q 039128 193 IVDVLCTACKQLLIHPVVL--NCGHVYCETCIITPT----VQQLKCEVCQCL 238 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l--~CgH~fC~~Cl~~~~----~~~~~CP~Cr~~ 238 (404)
.++..|.+|.+.- .+++ .|.-.|...|+...+ ...+.||.|...
T Consensus 23 ~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4566799998642 2222 588889999997643 457889999764
No 181
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=34.96 E-value=18 Score=27.53 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=22.2
Q ss_pred CCcccccccccccC---c-EEccCCCcccHHHHHH
Q 039128 20 HSFRCCICLDLLYK---P-IVLSCGHISCFWCVHR 50 (404)
Q Consensus 20 ~~l~C~IC~~~l~~---P-v~l~CGH~fC~~Ci~~ 50 (404)
+...|.+|...|.- - ---.||++||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 45679999987642 1 1247999999999654
No 182
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.58 E-value=13 Score=30.37 Aligned_cols=31 Identities=26% Similarity=0.652 Sum_probs=22.6
Q ss_pred ceeeeecccCccCce----ecccCCcchHHhhccc
Q 039128 195 DVLCTACKQLLIHPV----VLNCGHVYCETCIITP 225 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~----~l~CgH~fC~~Cl~~~ 225 (404)
...|.+|...|.--. --.||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 346999999886321 1269999999998764
No 183
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.91 E-value=9.7 Score=26.23 Aligned_cols=43 Identities=23% Similarity=0.600 Sum_probs=29.2
Q ss_pred ccceeeeecccCccCceec--ccCCcchHHhhcccc----cccCCCccCCc
Q 039128 193 IVDVLCTACKQLLIHPVVL--NCGHVYCETCIITPT----VQQLKCEVCQC 237 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l--~CgH~fC~~Cl~~~~----~~~~~CP~Cr~ 237 (404)
..+..|.+|.+. ..+++ .|...|...|+...+ ...+.||.|..
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 455679999874 22322 588888999998542 35677988854
No 184
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=33.77 E-value=16 Score=27.49 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=20.4
Q ss_pred cccccccccc-----CcEEcc-CCCcccHHHHHH
Q 039128 23 RCCICLDLLY-----KPIVLS-CGHISCFWCVHR 50 (404)
Q Consensus 23 ~C~IC~~~l~-----~Pv~l~-CGH~fC~~Ci~~ 50 (404)
-||-|...+. .+|..+ ||+.||..|-..
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~ 60 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQ 60 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSB
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCc
Confidence 4888887552 346776 999999888654
No 185
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=33.55 E-value=15 Score=27.65 Aligned_cols=32 Identities=28% Similarity=0.609 Sum_probs=23.2
Q ss_pred cceeeeecccCccCce----ecccCCcchHHhhccc
Q 039128 194 VDVLCTACKQLLIHPV----VLNCGHVYCETCIITP 225 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~----~l~CgH~fC~~Cl~~~ 225 (404)
+...|.+|...|.--. --.||.+||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3457999999876321 1269999999998763
No 186
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=33.10 E-value=19 Score=26.16 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=21.0
Q ss_pred CcccccccccccCc---EE-ccCCCcccHHHHH
Q 039128 21 SFRCCICLDLLYKP---IV-LSCGHISCFWCVH 49 (404)
Q Consensus 21 ~l~C~IC~~~l~~P---v~-l~CGH~fC~~Ci~ 49 (404)
.-.|.+|...|.-- -- -.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 45899999877521 11 3699999999964
No 187
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=32.73 E-value=15 Score=27.47 Aligned_cols=31 Identities=29% Similarity=0.789 Sum_probs=22.7
Q ss_pred ceeeeecccCccCce----ecccCCcchHHhhccc
Q 039128 195 DVLCTACKQLLIHPV----VLNCGHVYCETCIITP 225 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~----~l~CgH~fC~~Cl~~~ 225 (404)
...|.+|...|.--. --.||.+||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 346999999886221 1269999999998764
No 188
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=32.63 E-value=34 Score=24.79 Aligned_cols=49 Identities=20% Similarity=0.503 Sum_probs=31.3
Q ss_pred CCCcccccccccccCcEEc--c--CC-CcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 19 SHSFRCCICLDLLYKPIVL--S--CG-HISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l--~--CG-H~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.+...| ||.......++. . |. .-|+..|+.-.....+...||.|+..-.
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcccc
Confidence 456778 899865444432 3 55 5788899862222236678999977543
No 189
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=32.60 E-value=30 Score=26.47 Aligned_cols=46 Identities=17% Similarity=0.442 Sum_probs=33.3
Q ss_pred ceeeeecccCcc-----Cce--ecccCCcchHHhhccc-ccccCCCccCCcccC
Q 039128 195 DVLCTACKQLLI-----HPV--VLNCGHVYCETCIITP-TVQQLKCEVCQCLNP 240 (404)
Q Consensus 195 ~~~C~iC~~~~~-----~p~--~l~CgH~fC~~Cl~~~-~~~~~~CP~Cr~~~~ 240 (404)
.-.|.||.+-.- ++. .-.|+-..|+.|+.-- ......||.|+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 356999988642 121 2258999999999764 456778999998874
No 190
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=31.72 E-value=31 Score=27.56 Aligned_cols=48 Identities=17% Similarity=0.354 Sum_probs=37.0
Q ss_pred CCCccccccccccc---CcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 19 SHSFRCCICLDLLY---KPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 19 ~~~l~C~IC~~~l~---~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.+-|.|..|...|. .+....=|..||..|..+.+. ....|..|.+.+.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~--~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG--QDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC--CCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC--CccChhhcCCccC
Confidence 35699999999885 356667899999999988664 2226999988765
No 191
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=31.35 E-value=31 Score=27.36 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=36.0
Q ss_pred CCcccccccccccC-cEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLYK-PIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~~-Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
+.+.|..|...|.. +....=|..||..|..+.+. ..|..|.+++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~----~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA----VVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC----CBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC----ccCcccCCcCCc
Confidence 45999999998865 55566899999999877533 469999988763
No 192
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.06 E-value=15 Score=29.32 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=37.7
Q ss_pred cccceeeeecccCccC---ceecccCCcchHHhhcccccccCCCccCCcccCC
Q 039128 192 SIVDVLCTACKQLLIH---PVVLNCGHVYCETCIITPTVQQLKCEVCQCLNPN 241 (404)
Q Consensus 192 ~~~~~~C~iC~~~~~~---p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~~ 241 (404)
-.+-+.|..|...|.+ .....=|..||..|..+.+.....|..|.+++..
T Consensus 29 H~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 29 HSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred HhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 3455789999999863 3445568889999998876554479999998754
No 193
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.05 E-value=24 Score=31.71 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=25.7
Q ss_pred CcccccCCCcccccccccccCc----EEccCCCcccHHHHH
Q 039128 13 AEPEKISHSFRCCICLDLLYKP----IVLSCGHISCFWCVH 49 (404)
Q Consensus 13 ~~~~~l~~~l~C~IC~~~l~~P----v~l~CGH~fC~~Ci~ 49 (404)
.....+.+...|.+|...|.-- ---.||++||..|..
T Consensus 156 ~~~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 156 ERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCCCCCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred ccccccccCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 3345555667999999877521 124699999999964
No 194
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=30.92 E-value=14 Score=26.10 Aligned_cols=47 Identities=21% Similarity=0.515 Sum_probs=32.7
Q ss_pred ccceeeeecccCcc---Cceec--ccCCcchHHhhcccc-------cccCCCccCCccc
Q 039128 193 IVDVLCTACKQLLI---HPVVL--NCGHVYCETCIITPT-------VQQLKCEVCQCLN 239 (404)
Q Consensus 193 ~~~~~C~iC~~~~~---~p~~l--~CgH~fC~~Cl~~~~-------~~~~~CP~Cr~~~ 239 (404)
.++..|.||..... +.+++ .|.-.|...|+...+ ...+.|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 35567999987643 23333 688899999998632 3568899997643
No 195
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=30.87 E-value=49 Score=25.07 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=21.7
Q ss_pred CCccccccccccc--CcEEccCCCcccHH
Q 039128 20 HSFRCCICLDLLY--KPIVLSCGHISCFW 46 (404)
Q Consensus 20 ~~l~C~IC~~~l~--~Pv~l~CGH~fC~~ 46 (404)
...+|..|...+. .|+...||.+||..
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred cCccchhhCCeecccCCeEcCCCCEeccc
Confidence 3478999998654 48999999999964
No 196
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=30.34 E-value=14 Score=28.08 Aligned_cols=32 Identities=22% Similarity=0.628 Sum_probs=22.9
Q ss_pred cceeeeecccCccCce----ecccCCcchHHhhccc
Q 039128 194 VDVLCTACKQLLIHPV----VLNCGHVYCETCIITP 225 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~----~l~CgH~fC~~Cl~~~ 225 (404)
+...|.+|...|.--. --.||.+||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3446999998776321 1269999999998763
No 197
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.54 E-value=16 Score=27.47 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=22.2
Q ss_pred ceeeeecccCccCce----ecccCCcchHHhhccc
Q 039128 195 DVLCTACKQLLIHPV----VLNCGHVYCETCIITP 225 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~----~l~CgH~fC~~Cl~~~ 225 (404)
...|.+|...|.--. --.||.+||..|....
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 346999999885221 1269999999997653
No 198
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=28.98 E-value=56 Score=26.74 Aligned_cols=44 Identities=23% Similarity=0.504 Sum_probs=29.0
Q ss_pred cceeeeecccCccCceecccCCcchHHhhccc-----------ccccCCCccCCc
Q 039128 194 VDVLCTACKQLLIHPVVLNCGHVYCETCIITP-----------TVQQLKCEVCQC 237 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~~l~CgH~fC~~Cl~~~-----------~~~~~~CP~Cr~ 237 (404)
.+..|.+|.+-=.-..--.|-..||..||.+. ....+.|+.|+.
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34458888753221111268899999999864 245689999944
No 199
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=28.81 E-value=17 Score=25.91 Aligned_cols=44 Identities=16% Similarity=0.486 Sum_probs=30.5
Q ss_pred ccceeeeecccCccCceec--ccCCcchHHhhccc----ccccCCCccCCcc
Q 039128 193 IVDVLCTACKQLLIHPVVL--NCGHVYCETCIITP----TVQQLKCEVCQCL 238 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~p~~l--~CgH~fC~~Cl~~~----~~~~~~CP~Cr~~ 238 (404)
.++..|.||.+.- -+++ .|...|...|+... ....+.||.|...
T Consensus 6 ~~~~~C~vC~~~g--~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGG--ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCS--SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCC--CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4566799998642 2222 58888999999853 2457789999764
No 200
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.96 E-value=44 Score=25.62 Aligned_cols=49 Identities=20% Similarity=0.503 Sum_probs=30.1
Q ss_pred CCCcccccccccccCcEEc--c--CC-CcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 19 SHSFRCCICLDLLYKPIVL--S--CG-HISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l--~--CG-H~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
.+...| ||.......++. . |. .-|+..|+.-.....+...||.|+..-.
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCC
Confidence 355677 999865443321 2 54 4688888852222235678999977543
No 201
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=26.61 E-value=25 Score=30.31 Aligned_cols=43 Identities=19% Similarity=0.522 Sum_probs=29.0
Q ss_pred ceeeeecccCccCceec--ccCCcchHHhhcccc----cccCCCccCCccc
Q 039128 195 DVLCTACKQLLIHPVVL--NCGHVYCETCIITPT----VQQLKCEVCQCLN 239 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l--~CgH~fC~~Cl~~~~----~~~~~CP~Cr~~~ 239 (404)
+..|.+|.+-=. +++ .|...|+..|+...+ ...+.||.|+..-
T Consensus 4 ~~~C~~C~~~g~--ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGGE--LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCSS--CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCCe--eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 345888875411 222 588889999987642 4568999998753
No 202
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=26.35 E-value=20 Score=30.94 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=36.9
Q ss_pred CCcccccccccccC---cEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCCC
Q 039128 20 HSFRCCICLDLLYK---PIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYNH 69 (404)
Q Consensus 20 ~~l~C~IC~~~l~~---Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~~ 69 (404)
+.|.|..|...|.. +....=|..||..|..+.+. ....|..|.+.+..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~--~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG--NSGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS--CCEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccc--cCCccccCCCcccc
Confidence 55999999998864 66667899999999988654 11259999887753
No 203
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.33 E-value=52 Score=23.51 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=21.6
Q ss_pred CCCcccccccccccC-cEEccCCCcccHH
Q 039128 19 SHSFRCCICLDLLYK-PIVLSCGHISCFW 46 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~-Pv~l~CGH~fC~~ 46 (404)
....+|..|...+.- ++..-||.+||..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred CcCCcChhhCCcccccCeEeecCCEeccc
Confidence 345789999986543 6778899999963
No 204
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=26.29 E-value=32 Score=25.00 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=32.1
Q ss_pred ccceeeeecccCc---cCceec--ccCCcchHHhhccc--ccccCCCccCCcc
Q 039128 193 IVDVLCTACKQLL---IHPVVL--NCGHVYCETCIITP--TVQQLKCEVCQCL 238 (404)
Q Consensus 193 ~~~~~C~iC~~~~---~~p~~l--~CgH~fC~~Cl~~~--~~~~~~CP~Cr~~ 238 (404)
.++..|.||.+.- .+.+++ .|.-.|...|+... ....+.||.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4567799998753 223333 68889999999764 3467889998653
No 205
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.84 E-value=27 Score=31.09 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=24.6
Q ss_pred ccccCCCcccccccccccC---cEE-ccCCCcccHHHHH
Q 039128 15 PEKISHSFRCCICLDLLYK---PIV-LSCGHISCFWCVH 49 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l~~---Pv~-l~CGH~fC~~Ci~ 49 (404)
...+.+...|.+|...|.- --- -.||++||..|..
T Consensus 155 ~~~W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 155 APNWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCCCCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred cccCCCCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 3445567899999987742 111 3699999999864
No 206
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=25.39 E-value=67 Score=26.93 Aligned_cols=45 Identities=13% Similarity=0.295 Sum_probs=34.4
Q ss_pred CCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 20 HSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
+.|.|..|...|..-....=|..||..|..+.+. ..|..|...+.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~----~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG----TKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS----CBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc----ccccccccccC
Confidence 5699999999886543445688999999987654 35999987665
No 207
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.37 E-value=15 Score=28.01 Aligned_cols=47 Identities=19% Similarity=0.515 Sum_probs=33.7
Q ss_pred ccceeeeecccCcc---Cceec--ccCCcchHHhhcccc--------cccCCCccCCccc
Q 039128 193 IVDVLCTACKQLLI---HPVVL--NCGHVYCETCIITPT--------VQQLKCEVCQCLN 239 (404)
Q Consensus 193 ~~~~~C~iC~~~~~---~p~~l--~CgH~fC~~Cl~~~~--------~~~~~CP~Cr~~~ 239 (404)
+.+..|.||...-. +.+++ .|...|...|+...+ ...+.|+.|....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 35667999997643 34444 688999999998743 3568899997643
No 208
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.57 E-value=8.1 Score=32.03 Aligned_cols=43 Identities=21% Similarity=0.484 Sum_probs=28.9
Q ss_pred ceeeeecccCcc---Cc--eecccCCcchHHhhcccc----cccCCCccCCc
Q 039128 195 DVLCTACKQLLI---HP--VVLNCGHVYCETCIITPT----VQQLKCEVCQC 237 (404)
Q Consensus 195 ~~~C~iC~~~~~---~p--~~l~CgH~fC~~Cl~~~~----~~~~~CP~Cr~ 237 (404)
+-.|.+|...|. ++ +-..|.|.+|..|-.... ...+.|-+|++
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 457999998773 22 334689999999876542 23566777754
No 209
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.50 E-value=22 Score=24.98 Aligned_cols=46 Identities=20% Similarity=0.424 Sum_probs=30.4
Q ss_pred ccceeeeecccCccC-ceec---ccCCcchHHhhcccc-----cccCCCccCCcc
Q 039128 193 IVDVLCTACKQLLIH-PVVL---NCGHVYCETCIITPT-----VQQLKCEVCQCL 238 (404)
Q Consensus 193 ~~~~~C~iC~~~~~~-p~~l---~CgH~fC~~Cl~~~~-----~~~~~CP~Cr~~ 238 (404)
.+...|++|.....+ -..+ .|..=|...|+.-.. ...+.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456779999887642 2233 466667778876532 256889999764
No 210
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=24.03 E-value=67 Score=26.25 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=30.6
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHhH---------cCCCCCCCCCCCc
Q 039128 19 SHSFRCCICLDLLYKPIVLSCGHISCFWCVHRSM---------NGLRESHCPICRR 65 (404)
Q Consensus 19 ~~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~---------~~~~~~~CP~CR~ 65 (404)
..+..|.+|.+--.-..--.|-..||..||...+ .......|+.|+-
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3445688887642211112588999999998642 1346788999954
No 211
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=23.43 E-value=31 Score=26.69 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=28.3
Q ss_pred cceeeeecccCccCceec---ccCCcchHHhhccc---ccccCCCccCCc
Q 039128 194 VDVLCTACKQLLIHPVVL---NCGHVYCETCIITP---TVQQLKCEVCQC 237 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~~l---~CgH~fC~~Cl~~~---~~~~~~CP~Cr~ 237 (404)
+.+.| ||.....+-.++ .|.--|...|+... ....+.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 787765544444 47777888888653 234689999964
No 212
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=23.06 E-value=22 Score=24.71 Aligned_cols=43 Identities=23% Similarity=0.622 Sum_probs=29.2
Q ss_pred cceeeeecccCccCceec--ccCCcchHHhhcccc----cccCCCccCCcc
Q 039128 194 VDVLCTACKQLLIHPVVL--NCGHVYCETCIITPT----VQQLKCEVCQCL 238 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~~l--~CgH~fC~~Cl~~~~----~~~~~CP~Cr~~ 238 (404)
.+..|.+|... ..+++ .|...|...|+...+ ...+.||.|...
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 45569999874 22222 688889999998642 356789988653
No 213
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=22.91 E-value=24 Score=26.82 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=35.2
Q ss_pred ccccCCCcccccccccc---cCcEE-c-cCCCcccHHHHHHhHcCCCCCCCCCCCcCC
Q 039128 15 PEKISHSFRCCICLDLL---YKPIV-L-SCGHISCFWCVHRSMNGLRESHCPICRRPY 67 (404)
Q Consensus 15 ~~~l~~~l~C~IC~~~l---~~Pv~-l-~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~ 67 (404)
.....+...|.||...- .+.++ . .|.-.|...|+..-....+...||.|....
T Consensus 19 ~~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 19 QSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp TCCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 34456779999999753 11222 2 588889999986544444677899996543
No 214
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=22.51 E-value=63 Score=27.47 Aligned_cols=45 Identities=13% Similarity=0.295 Sum_probs=30.0
Q ss_pred CCcccccccccccCcEEccCCCcccHHHHHHhHcCCCCCCCCCCCcCCC
Q 039128 20 HSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNGLRESHCPICRRPYN 68 (404)
Q Consensus 20 ~~l~C~IC~~~l~~Pv~l~CGH~fC~~Ci~~~~~~~~~~~CP~CR~~~~ 68 (404)
+.|.|..|...|..-....=|..||..|..+.+. ..|..|...+.
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~----~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG----TKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTTS----CCCTTTCCCCC
T ss_pred ccCccCCCCCccCCCceeECCEeeecCccccccc----cccccCCCccC
Confidence 4578888877775432334577888888766433 46888887665
No 215
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.44 E-value=23 Score=28.37 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=37.5
Q ss_pred cccccceeeeecccCccC---ceecccCCcchHHhhcccccccCCCccCCcccC
Q 039128 190 QISIVDVLCTACKQLLIH---PVVLNCGHVYCETCIITPTVQQLKCEVCQCLNP 240 (404)
Q Consensus 190 ~~~~~~~~C~iC~~~~~~---p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 240 (404)
.+-.+-+.|..|...|.+ +....=|..||..|..+.......|..|.+.+.
T Consensus 24 ~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 24 YWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp EEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred cccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 344566889999988853 444556888999999876554447999999874
No 216
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.82 E-value=80 Score=22.53 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=21.2
Q ss_pred CCccccccccccc-CcEEccCCCcccHH
Q 039128 20 HSFRCCICLDLLY-KPIVLSCGHISCFW 46 (404)
Q Consensus 20 ~~l~C~IC~~~l~-~Pv~l~CGH~fC~~ 46 (404)
...+|..|...+. .++...||.+||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred cCCcChhhCCccCccCEEeecCCEeccc
Confidence 4578999998654 36778899999964
No 217
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=20.46 E-value=35 Score=26.64 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=11.2
Q ss_pred cccHHHHHHhHcC
Q 039128 42 ISCFWCVHRSMNG 54 (404)
Q Consensus 42 ~fC~~Ci~~~~~~ 54 (404)
-||+.|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999873
No 218
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=20.37 E-value=35 Score=26.57 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=10.8
Q ss_pred cccHHHHHHhHc
Q 039128 42 ISCFWCVHRSMN 53 (404)
Q Consensus 42 ~fC~~Ci~~~~~ 53 (404)
-||+.|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999987
No 219
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.36 E-value=45 Score=32.50 Aligned_cols=45 Identities=18% Similarity=0.449 Sum_probs=30.1
Q ss_pred cceeeeecccCccCceec--ccCCcchHHhhcccc----------cccCCCccCCcc
Q 039128 194 VDVLCTACKQLLIHPVVL--NCGHVYCETCIITPT----------VQQLKCEVCQCL 238 (404)
Q Consensus 194 ~~~~C~iC~~~~~~p~~l--~CgH~fC~~Cl~~~~----------~~~~~CP~Cr~~ 238 (404)
.+..|.+|.+--.-=.-- .|...||..||.+.. ...+.|-+|.-.
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 455688887532100111 688999999999863 367899999754
No 220
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=20.24 E-value=17 Score=31.50 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=37.5
Q ss_pred cccccceeeeecccCccC---ceecccCCcchHHhhcccccccCCCccCCcccC
Q 039128 190 QISIVDVLCTACKQLLIH---PVVLNCGHVYCETCIITPTVQQLKCEVCQCLNP 240 (404)
Q Consensus 190 ~~~~~~~~C~iC~~~~~~---p~~l~CgH~fC~~Cl~~~~~~~~~CP~Cr~~~~ 240 (404)
.+-.+-+.|..|...|.. +....=|..||..|..+.......|..|.+.+.
T Consensus 27 ~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 27 YWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp EECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred EecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 344566889999988874 445556889999998776544337999998874
No 221
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=20.04 E-value=32 Score=30.29 Aligned_cols=43 Identities=19% Similarity=0.502 Sum_probs=29.6
Q ss_pred ceeeeecccCccCceec--ccCCcchHHhhcccc----cccCCCccCCccc
Q 039128 195 DVLCTACKQLLIHPVVL--NCGHVYCETCIITPT----VQQLKCEVCQCLN 239 (404)
Q Consensus 195 ~~~C~iC~~~~~~p~~l--~CgH~fC~~Cl~~~~----~~~~~CP~Cr~~~ 239 (404)
+..|.+|.+-=. +++ .|...|+..|+...+ ...+.||.|+...
T Consensus 7 ~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345999975321 222 588899999997642 4568999998753
Done!