Query 039134
Match_columns 339
No_of_seqs 161 out of 1799
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 06:35:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.2E-47 6.9E-52 385.2 25.4 281 39-321 161-500 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 3.6E-38 7.8E-43 286.6 12.1 226 41-268 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.4E-34 3E-39 305.8 23.5 265 35-320 183-506 (1153)
4 PRK04841 transcriptional regul 99.6 2.7E-14 5.9E-19 149.4 22.1 258 33-319 11-335 (903)
5 COG3899 Predicted ATPase [Gene 99.4 2.5E-12 5.3E-17 131.9 16.5 268 38-319 2-389 (849)
6 COG2909 MalT ATP-dependent tra 99.4 1.1E-11 2.3E-16 122.2 16.9 260 35-320 18-342 (894)
7 TIGR00635 ruvB Holliday juncti 99.3 5.6E-11 1.2E-15 109.0 12.5 238 36-295 4-290 (305)
8 PRK00080 ruvB Holliday junctio 99.2 8.1E-11 1.8E-15 109.0 10.8 243 31-295 20-311 (328)
9 PF01637 Arch_ATPase: Archaeal 99.2 2E-11 4.3E-16 107.0 6.1 162 38-203 1-234 (234)
10 PRK00411 cdc6 cell division co 99.2 5.4E-10 1.2E-14 106.2 16.0 256 34-295 28-359 (394)
11 TIGR02928 orc1/cdc6 family rep 99.2 2.9E-09 6.3E-14 100.1 18.5 255 35-295 14-351 (365)
12 TIGR03015 pepcterm_ATPase puta 99.0 1.5E-08 3.3E-13 91.1 16.6 147 57-207 42-242 (269)
13 COG2256 MGS1 ATPase related to 99.0 3.5E-09 7.5E-14 96.9 12.2 161 31-197 19-206 (436)
14 PRK12323 DNA polymerase III su 99.0 1.9E-08 4E-13 98.6 16.7 173 31-203 11-225 (700)
15 PRK04195 replication factor C 99.0 4.7E-08 1E-12 95.2 19.5 225 30-268 8-272 (482)
16 PF05729 NACHT: NACHT domain 98.9 8.2E-09 1.8E-13 85.4 9.8 114 59-173 1-154 (166)
17 PRK07003 DNA polymerase III su 98.9 3.2E-08 7E-13 98.2 15.2 177 31-207 11-225 (830)
18 TIGR03420 DnaA_homol_Hda DnaA 98.9 1.4E-08 2.9E-13 89.0 10.9 160 40-207 21-205 (226)
19 PF05496 RuvB_N: Holliday junc 98.9 1.9E-08 4E-13 86.2 11.1 172 30-209 18-227 (233)
20 PRK13342 recombination factor 98.9 1.4E-08 3E-13 97.0 10.8 168 31-205 7-198 (413)
21 PRK06893 DNA replication initi 98.8 4.4E-08 9.6E-13 86.0 11.8 144 57-207 38-207 (229)
22 PRK14960 DNA polymerase III su 98.8 1.7E-07 3.7E-12 92.2 15.8 171 31-201 10-217 (702)
23 KOG2028 ATPase related to the 98.8 7.5E-08 1.6E-12 87.1 11.5 159 32-197 134-330 (554)
24 PRK00440 rfc replication facto 98.8 2E-07 4.4E-12 85.9 14.9 167 32-202 13-202 (319)
25 PRK14961 DNA polymerase III su 98.8 1.9E-07 4.1E-12 87.7 14.7 171 31-202 11-219 (363)
26 PF13173 AAA_14: AAA domain 98.8 1.9E-08 4.1E-13 80.1 6.7 112 58-173 2-126 (128)
27 PLN03025 replication factor C 98.8 7.1E-08 1.5E-12 89.0 11.5 169 30-201 7-198 (319)
28 PRK14963 DNA polymerase III su 98.7 1E-07 2.3E-12 92.6 11.9 169 31-201 9-215 (504)
29 PRK08084 DNA replication initi 98.7 1.5E-07 3.2E-12 83.0 11.8 163 37-207 24-213 (235)
30 cd00009 AAA The AAA+ (ATPases 98.7 5.7E-08 1.2E-12 78.1 8.5 111 39-153 1-131 (151)
31 PRK14949 DNA polymerase III su 98.7 1.8E-07 4E-12 94.6 13.7 172 31-203 11-220 (944)
32 PRK12402 replication factor C 98.7 2.8E-07 6E-12 85.7 13.8 171 32-205 11-228 (337)
33 PRK08691 DNA polymerase III su 98.7 3.9E-07 8.3E-12 90.4 15.1 174 31-204 11-221 (709)
34 PRK14957 DNA polymerase III su 98.7 5.7E-07 1.2E-11 87.9 15.4 174 32-205 12-223 (546)
35 PRK08727 hypothetical protein; 98.6 7E-07 1.5E-11 78.6 13.1 154 39-200 23-201 (233)
36 PRK14964 DNA polymerase III su 98.6 7.2E-07 1.6E-11 86.0 14.2 170 31-201 8-215 (491)
37 PRK07994 DNA polymerase III su 98.6 4.6E-07 1E-11 89.9 13.1 171 32-203 12-220 (647)
38 PRK14962 DNA polymerase III su 98.6 6.5E-07 1.4E-11 86.5 13.8 176 31-207 9-223 (472)
39 PRK06645 DNA polymerase III su 98.6 9.3E-07 2E-11 85.8 14.8 170 32-201 17-227 (507)
40 PRK07764 DNA polymerase III su 98.6 7E-07 1.5E-11 91.3 14.2 169 31-201 10-219 (824)
41 PRK05564 DNA polymerase III su 98.6 5.3E-07 1.1E-11 83.0 12.1 164 37-201 5-188 (313)
42 PRK14958 DNA polymerase III su 98.6 6.1E-07 1.3E-11 87.5 13.1 173 31-203 11-220 (509)
43 PRK14956 DNA polymerase III su 98.6 8E-07 1.7E-11 85.0 13.4 170 31-201 13-220 (484)
44 PTZ00112 origin recognition co 98.6 1.3E-06 2.8E-11 87.8 15.3 255 35-295 754-1087(1164)
45 PRK07940 DNA polymerase III su 98.6 6.6E-07 1.4E-11 84.5 12.7 164 37-202 6-212 (394)
46 PRK08903 DnaA regulatory inact 98.6 6E-07 1.3E-11 78.7 11.6 159 39-208 22-204 (227)
47 PRK14951 DNA polymerase III su 98.6 1.2E-06 2.5E-11 86.9 14.7 171 32-203 12-225 (618)
48 PRK07471 DNA polymerase III su 98.6 1.5E-06 3.4E-11 81.2 14.9 171 32-203 15-238 (365)
49 PRK05896 DNA polymerase III su 98.6 7.9E-07 1.7E-11 87.2 13.4 172 31-204 11-222 (605)
50 PRK14969 DNA polymerase III su 98.6 6E-07 1.3E-11 88.1 12.1 171 33-204 13-222 (527)
51 PF14516 AAA_35: AAA-like doma 98.6 1.3E-05 2.9E-10 74.2 20.3 174 32-211 7-247 (331)
52 PRK14955 DNA polymerase III su 98.6 8.4E-07 1.8E-11 84.3 12.5 170 31-202 11-227 (397)
53 PRK09112 DNA polymerase III su 98.6 2.2E-06 4.8E-11 79.8 15.0 171 32-203 19-240 (351)
54 PRK09111 DNA polymerase III su 98.5 1.4E-06 3E-11 86.4 14.2 174 30-204 18-234 (598)
55 PRK14954 DNA polymerase III su 98.5 2.1E-06 4.5E-11 85.3 14.8 170 31-202 11-228 (620)
56 PRK13341 recombination factor 98.5 5.1E-07 1.1E-11 91.2 10.5 164 31-201 23-215 (725)
57 PRK05642 DNA replication initi 98.5 1.3E-06 2.8E-11 76.9 11.8 143 58-207 45-212 (234)
58 TIGR02397 dnaX_nterm DNA polym 98.5 4E-06 8.7E-11 78.5 15.7 170 34-205 12-220 (355)
59 PRK14952 DNA polymerase III su 98.5 3.3E-06 7.1E-11 83.4 15.5 173 31-205 8-222 (584)
60 COG3903 Predicted ATPase [Gene 98.5 3.5E-08 7.6E-13 90.9 1.5 247 57-321 13-319 (414)
61 TIGR00678 holB DNA polymerase 98.5 1.3E-06 2.8E-11 74.3 11.0 150 47-198 3-186 (188)
62 TIGR03345 VI_ClpV1 type VI sec 98.5 1.3E-06 2.9E-11 90.2 13.0 138 35-173 186-354 (852)
63 PRK09087 hypothetical protein; 98.5 1.5E-06 3.2E-11 76.1 10.9 134 58-207 44-199 (226)
64 COG2255 RuvB Holliday junction 98.5 1.6E-06 3.4E-11 76.3 10.6 246 30-296 20-313 (332)
65 PRK14953 DNA polymerase III su 98.4 6.2E-06 1.3E-10 80.1 15.3 170 34-204 14-221 (486)
66 PRK07133 DNA polymerase III su 98.4 4.8E-06 1E-10 83.4 14.7 171 31-203 13-220 (725)
67 PRK14970 DNA polymerase III su 98.4 4.7E-06 1E-10 78.5 13.9 172 31-202 12-208 (367)
68 PRK14971 DNA polymerase III su 98.4 7.4E-06 1.6E-10 81.7 14.8 169 32-201 13-220 (614)
69 PF00308 Bac_DnaA: Bacterial d 98.4 1.4E-06 2.9E-11 76.0 8.5 169 37-207 10-212 (219)
70 COG1474 CDC6 Cdc6-related prot 98.4 5.3E-05 1.2E-09 70.9 19.6 250 35-296 16-336 (366)
71 PRK14959 DNA polymerase III su 98.4 5E-06 1.1E-10 82.1 13.1 176 31-207 11-225 (624)
72 PF13191 AAA_16: AAA ATPase do 98.4 4.6E-07 9.9E-12 76.4 5.3 47 37-83 1-49 (185)
73 TIGR02639 ClpA ATP-dependent C 98.4 2.4E-06 5.2E-11 87.4 11.1 94 35-129 181-286 (731)
74 PRK14950 DNA polymerase III su 98.4 8.5E-06 1.8E-10 81.2 14.7 176 31-207 11-225 (585)
75 PRK06305 DNA polymerase III su 98.3 1.1E-05 2.3E-10 77.8 14.4 170 32-203 13-223 (451)
76 PRK08451 DNA polymerase III su 98.3 1.2E-05 2.6E-10 78.4 14.7 174 30-203 8-218 (535)
77 PRK06647 DNA polymerase III su 98.3 1.4E-05 2.9E-10 79.0 14.8 172 31-203 11-220 (563)
78 PRK05563 DNA polymerase III su 98.3 1.6E-05 3.5E-10 78.7 15.3 168 32-201 12-218 (559)
79 TIGR01242 26Sp45 26S proteasom 98.3 1.4E-06 3.1E-11 81.9 7.5 90 37-129 123-227 (364)
80 PHA02544 44 clamp loader, smal 98.3 3.7E-06 8E-11 77.5 9.6 116 30-152 15-141 (316)
81 PTZ00202 tuzin; Provisional 98.3 7.9E-06 1.7E-10 76.6 11.4 55 28-82 254-310 (550)
82 PRK03992 proteasome-activating 98.3 5.3E-06 1.2E-10 78.6 9.9 87 37-129 132-236 (389)
83 PRK14948 DNA polymerase III su 98.3 2.4E-05 5.3E-10 78.1 14.9 173 32-205 12-224 (620)
84 PRK14965 DNA polymerase III su 98.2 1.7E-05 3.8E-10 78.7 13.7 170 32-203 12-221 (576)
85 KOG0989 Replication factor C, 98.2 2.6E-06 5.7E-11 75.6 6.9 169 33-203 33-231 (346)
86 PRK14088 dnaA chromosomal repl 98.2 7.4E-06 1.6E-10 78.8 10.3 164 38-203 108-305 (440)
87 PRK06620 hypothetical protein; 98.2 1.1E-05 2.4E-10 70.0 10.3 148 36-201 17-187 (214)
88 PRK10865 protein disaggregatio 98.2 8.5E-06 1.8E-10 84.5 11.1 94 35-129 177-283 (857)
89 PF00004 AAA: ATPase family as 98.2 4.3E-06 9.3E-11 66.3 6.8 63 61-129 1-70 (132)
90 PRK14087 dnaA chromosomal repl 98.2 1.3E-05 2.9E-10 77.2 11.3 168 38-207 118-323 (450)
91 PF13401 AAA_22: AAA domain; P 98.2 3.5E-06 7.7E-11 66.9 6.1 95 57-151 3-125 (131)
92 cd01128 rho_factor Transcripti 98.2 6.5E-06 1.4E-10 72.9 7.7 40 57-98 15-54 (249)
93 TIGR03346 chaperone_ClpB ATP-d 98.2 2.5E-05 5.4E-10 81.3 13.0 92 36-129 173-278 (852)
94 PRK14086 dnaA chromosomal repl 98.1 3.2E-05 6.9E-10 76.2 12.8 166 38-205 291-490 (617)
95 TIGR00362 DnaA chromosomal rep 98.1 4.1E-05 8.9E-10 73.1 13.2 164 38-203 113-310 (405)
96 PRK00149 dnaA chromosomal repl 98.1 2.8E-05 6.2E-10 75.2 12.0 167 38-206 125-325 (450)
97 KOG0733 Nuclear AAA ATPase (VC 98.1 1.3E-05 2.9E-10 77.2 8.5 86 36-129 190-294 (802)
98 TIGR02903 spore_lon_C ATP-depe 98.1 4.7E-05 1E-09 76.2 12.8 50 32-82 150-199 (615)
99 PRK11331 5-methylcytosine-spec 98.1 1.7E-05 3.7E-10 75.2 8.9 91 36-130 175-285 (459)
100 TIGR02881 spore_V_K stage V sp 98.1 1.9E-05 4.2E-10 70.7 8.8 47 36-82 6-66 (261)
101 PRK09376 rho transcription ter 98.0 8.9E-06 1.9E-10 75.6 6.4 50 47-98 158-207 (416)
102 CHL00095 clpC Clp protease ATP 98.0 1.7E-05 3.8E-10 82.1 9.1 91 36-127 179-281 (821)
103 PRK07399 DNA polymerase III su 98.0 0.00015 3.1E-09 66.7 14.2 166 37-204 5-222 (314)
104 PRK08058 DNA polymerase III su 98.0 5.6E-05 1.2E-09 70.1 11.3 136 37-173 6-173 (329)
105 COG1222 RPT1 ATP-dependent 26S 98.0 4.1E-05 8.9E-10 69.6 9.7 108 39-154 154-302 (406)
106 PRK08118 topology modulation p 98.0 1.3E-05 2.8E-10 66.8 5.9 66 59-126 2-67 (167)
107 KOG0991 Replication factor C, 98.0 1.3E-05 2.9E-10 68.6 5.9 94 35-130 26-126 (333)
108 PRK08116 hypothetical protein; 98.0 1.1E-05 2.5E-10 72.3 5.8 91 58-152 114-221 (268)
109 CHL00176 ftsH cell division pr 98.0 2.9E-05 6.2E-10 77.7 9.0 161 37-203 184-395 (638)
110 TIGR01241 FtsH_fam ATP-depende 98.0 2.9E-05 6.4E-10 76.0 8.8 86 37-128 56-158 (495)
111 PF05673 DUF815: Protein of un 97.9 8.4E-05 1.8E-09 64.8 10.2 115 35-154 26-153 (249)
112 TIGR03689 pup_AAA proteasome A 97.9 3.3E-05 7.1E-10 75.0 8.4 92 37-128 183-300 (512)
113 PRK12377 putative replication 97.9 1.7E-05 3.8E-10 70.1 5.8 91 58-152 101-206 (248)
114 PRK07261 topology modulation p 97.9 2.6E-05 5.7E-10 65.2 6.6 66 60-127 2-67 (171)
115 smart00382 AAA ATPases associa 97.9 5.4E-05 1.2E-09 59.9 7.8 71 58-131 2-92 (148)
116 PRK08181 transposase; Validate 97.9 1.8E-05 3.9E-10 70.9 5.4 90 50-152 101-209 (269)
117 PRK12422 chromosomal replicati 97.9 0.00025 5.3E-09 68.3 13.4 133 37-173 113-275 (445)
118 COG1373 Predicted ATPase (AAA+ 97.9 0.00023 5E-09 67.6 13.1 230 39-294 20-270 (398)
119 PRK08769 DNA polymerase III su 97.9 0.00021 4.6E-09 65.5 12.4 160 43-203 11-208 (319)
120 PF13177 DNA_pol3_delta2: DNA 97.9 0.00018 4E-09 59.5 10.9 130 40-170 1-162 (162)
121 KOG0741 AAA+-type ATPase [Post 97.9 0.00044 9.5E-09 66.0 14.0 113 56-173 536-676 (744)
122 PRK05707 DNA polymerase III su 97.9 0.00024 5.1E-09 65.7 12.2 145 55-202 19-202 (328)
123 TIGR02880 cbbX_cfxQ probable R 97.8 0.00019 4.1E-09 65.1 10.7 47 37-83 23-83 (284)
124 TIGR00767 rho transcription te 97.8 7.5E-05 1.6E-09 69.8 8.2 41 56-98 166-206 (415)
125 PRK07993 DNA polymerase III su 97.8 0.00042 9.1E-09 64.2 13.0 156 43-200 9-201 (334)
126 PRK11034 clpA ATP-dependent Cl 97.8 6.8E-05 1.5E-09 76.4 8.3 92 36-128 186-289 (758)
127 KOG1969 DNA replication checkp 97.8 4.8E-05 1E-09 74.8 6.8 69 56-130 324-400 (877)
128 CHL00181 cbbX CbbX; Provisiona 97.8 0.00041 9E-09 62.9 12.5 46 37-82 24-83 (287)
129 PRK06871 DNA polymerase III su 97.8 0.00057 1.2E-08 62.9 13.3 155 44-200 10-200 (325)
130 PRK07952 DNA replication prote 97.8 7.8E-05 1.7E-09 65.8 7.3 106 43-152 83-205 (244)
131 PRK10536 hypothetical protein; 97.8 0.00011 2.3E-09 64.8 8.0 44 36-82 55-98 (262)
132 PTZ00454 26S protease regulato 97.8 0.00012 2.6E-09 69.4 8.8 84 38-128 147-249 (398)
133 COG0593 DnaA ATPase involved i 97.7 0.00016 3.4E-09 68.0 8.5 132 37-173 89-248 (408)
134 PHA00729 NTP-binding motif con 97.7 0.00029 6.4E-09 61.0 9.0 74 46-126 6-91 (226)
135 PF02562 PhoH: PhoH-like prote 97.7 0.00012 2.6E-09 62.7 6.5 108 41-152 5-156 (205)
136 KOG0744 AAA+-type ATPase [Post 97.7 0.00015 3.2E-09 65.1 7.2 70 58-128 177-261 (423)
137 COG0466 Lon ATP-dependent Lon 97.6 0.00015 3.2E-09 71.5 7.4 131 37-173 324-499 (782)
138 smart00763 AAA_PrkA PrkA AAA d 97.6 8.6E-05 1.9E-09 68.6 5.4 47 37-83 52-103 (361)
139 PTZ00361 26 proteosome regulat 97.6 0.0001 2.2E-09 70.5 6.1 85 37-127 184-286 (438)
140 CHL00195 ycf46 Ycf46; Provisio 97.6 0.00053 1.1E-08 66.6 10.8 85 37-128 229-329 (489)
141 PRK06921 hypothetical protein; 97.6 5.5E-05 1.2E-09 67.8 3.8 68 57-127 116-187 (266)
142 PLN00020 ribulose bisphosphate 97.6 0.00014 3E-09 67.1 6.0 67 56-128 146-223 (413)
143 PRK06835 DNA replication prote 97.6 9.4E-05 2E-09 68.3 4.8 85 58-152 183-289 (329)
144 COG0542 clpA ATP-binding subun 97.6 0.00019 4E-09 72.4 7.2 92 36-130 491-606 (786)
145 PRK06090 DNA polymerase III su 97.6 0.0016 3.5E-08 59.8 12.8 157 43-203 10-201 (319)
146 KOG2543 Origin recognition com 97.5 0.0003 6.5E-09 64.6 7.8 59 34-98 4-64 (438)
147 PF04665 Pox_A32: Poxvirus A32 97.5 0.00024 5.3E-09 62.2 6.9 38 58-98 13-50 (241)
148 PF13207 AAA_17: AAA domain; P 97.5 7.8E-05 1.7E-09 58.3 3.5 23 60-82 1-23 (121)
149 PF01695 IstB_IS21: IstB-like 97.5 0.00023 5E-09 59.9 6.3 67 57-128 46-119 (178)
150 TIGR00763 lon ATP-dependent pr 97.5 0.00041 8.8E-09 71.7 9.3 47 37-83 321-372 (775)
151 PF05621 TniB: Bacterial TniB 97.5 0.002 4.4E-08 58.0 12.5 160 44-203 45-261 (302)
152 PRK06526 transposase; Provisio 97.5 4.2E-05 9.1E-10 68.1 1.7 27 57-83 97-123 (254)
153 KOG0736 Peroxisome assembly fa 97.5 0.0005 1.1E-08 68.3 9.2 83 39-129 675-776 (953)
154 PF10443 RNA12: RNA12 protein; 97.5 0.0017 3.6E-08 61.1 12.1 41 41-82 1-42 (431)
155 CHL00095 clpC Clp protease ATP 97.5 0.0006 1.3E-08 70.9 10.1 92 36-130 509-624 (821)
156 COG1618 Predicted nucleotide k 97.5 0.00041 8.8E-09 56.3 6.7 26 58-83 5-30 (179)
157 COG0470 HolB ATPase involved i 97.4 0.00082 1.8E-08 61.9 9.7 131 38-168 3-167 (325)
158 COG1223 Predicted ATPase (AAA+ 97.4 0.00046 1E-08 60.3 7.2 87 37-129 122-222 (368)
159 TIGR01243 CDC48 AAA family ATP 97.4 0.00043 9.3E-09 71.2 8.2 85 38-128 180-282 (733)
160 TIGR03345 VI_ClpV1 type VI sec 97.4 0.0007 1.5E-08 70.3 9.7 48 36-83 566-621 (852)
161 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00084 1.8E-08 70.0 10.3 48 36-83 565-620 (852)
162 cd01131 PilT Pilus retraction 97.4 0.00038 8.3E-09 59.6 6.5 91 59-152 2-109 (198)
163 COG2812 DnaX DNA polymerase II 97.4 0.00063 1.4E-08 65.9 8.6 163 35-198 15-215 (515)
164 KOG0731 AAA+-type ATPase conta 97.4 0.0013 2.8E-08 66.1 10.9 83 38-128 313-414 (774)
165 TIGR02639 ClpA ATP-dependent C 97.4 0.00093 2E-08 68.6 10.3 47 36-82 454-508 (731)
166 PF14532 Sigma54_activ_2: Sigm 97.4 0.00024 5.2E-09 57.1 4.9 103 39-152 1-110 (138)
167 PRK09361 radB DNA repair and r 97.4 0.00074 1.6E-08 59.0 8.3 48 48-98 12-60 (225)
168 PRK06696 uridine kinase; Valid 97.4 0.00027 5.8E-09 61.8 5.4 44 40-83 2-47 (223)
169 COG1484 DnaC DNA replication p 97.4 0.00045 9.8E-09 61.5 6.8 57 39-98 86-142 (254)
170 KOG2004 Mitochondrial ATP-depe 97.4 0.00027 5.8E-09 69.6 5.6 48 36-83 411-463 (906)
171 KOG0734 AAA+-type ATPase conta 97.4 0.00063 1.4E-08 65.0 7.6 83 39-129 307-408 (752)
172 KOG2227 Pre-initiation complex 97.4 0.0041 8.8E-08 58.8 12.8 94 35-129 149-268 (529)
173 cd01393 recA_like RecA is a b 97.4 0.0013 2.8E-08 57.4 9.3 50 48-100 8-64 (226)
174 KOG0728 26S proteasome regulat 97.3 0.0023 4.9E-08 55.7 10.3 85 37-129 147-252 (404)
175 TIGR02237 recomb_radB DNA repa 97.3 0.00074 1.6E-08 58.2 7.5 41 56-99 10-50 (209)
176 PRK08939 primosomal protein Dn 97.3 0.00082 1.8E-08 61.5 7.8 109 40-152 135-261 (306)
177 KOG0735 AAA+-type ATPase [Post 97.3 0.00064 1.4E-08 67.0 7.4 71 56-128 429-505 (952)
178 KOG0729 26S proteasome regulat 97.3 0.0011 2.5E-08 58.0 8.1 82 39-128 180-281 (435)
179 PRK12608 transcription termina 97.3 0.0012 2.7E-08 61.4 8.9 40 44-83 119-158 (380)
180 PRK09183 transposase/IS protei 97.3 0.00029 6.2E-09 63.0 4.6 68 58-128 102-175 (259)
181 PRK13695 putative NTPase; Prov 97.3 0.00089 1.9E-08 56.0 7.2 23 60-82 2-24 (174)
182 KOG0733 Nuclear AAA ATPase (VC 97.3 0.00097 2.1E-08 64.8 8.1 65 56-129 543-616 (802)
183 PRK13531 regulatory ATPase Rav 97.3 0.00039 8.4E-09 66.7 5.3 45 35-82 19-63 (498)
184 cd01394 radB RadB. The archaea 97.3 0.0016 3.4E-08 56.6 8.6 49 47-98 7-56 (218)
185 TIGR02012 tigrfam_recA protein 97.2 0.0016 3.4E-08 59.8 8.8 77 48-127 43-143 (321)
186 COG1875 NYN ribonuclease and A 97.2 0.00099 2.1E-08 61.0 7.1 115 37-152 225-388 (436)
187 PRK06964 DNA polymerase III su 97.2 0.012 2.7E-07 54.5 14.5 142 57-202 20-224 (342)
188 cd00983 recA RecA is a bacter 97.2 0.0018 4E-08 59.4 8.9 77 48-127 43-143 (325)
189 TIGR01243 CDC48 AAA family ATP 97.2 0.0017 3.8E-08 66.7 9.5 86 37-128 454-557 (733)
190 cd01120 RecA-like_NTPases RecA 97.2 0.0016 3.5E-08 53.1 7.6 36 60-98 1-36 (165)
191 PRK05541 adenylylsulfate kinas 97.2 0.00097 2.1E-08 55.9 6.4 37 57-96 6-42 (176)
192 PRK06067 flagellar accessory p 97.2 0.002 4.3E-08 56.7 8.5 48 48-98 14-62 (234)
193 PRK09354 recA recombinase A; P 97.2 0.0023 5E-08 59.3 9.1 77 48-127 48-148 (349)
194 cd01133 F1-ATPase_beta F1 ATP 97.2 0.00094 2E-08 59.7 6.3 37 57-96 68-104 (274)
195 COG2884 FtsE Predicted ATPase 97.2 0.0018 3.9E-08 54.2 7.4 26 57-82 27-52 (223)
196 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0018 4E-08 58.0 8.3 37 43-82 9-45 (262)
197 PF06309 Torsin: Torsin; Inte 97.1 0.0024 5.1E-08 50.0 7.6 48 36-83 25-78 (127)
198 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0018 3.9E-08 56.9 7.8 52 50-102 10-66 (235)
199 TIGR00602 rad24 checkpoint pro 97.1 0.00072 1.6E-08 67.5 5.8 52 31-82 79-134 (637)
200 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0027 5.8E-08 56.0 8.8 49 47-98 9-58 (237)
201 PF12775 AAA_7: P-loop contain 97.1 0.00078 1.7E-08 60.6 5.4 69 58-129 33-112 (272)
202 PRK04296 thymidine kinase; Pro 97.1 0.0017 3.7E-08 55.3 7.2 90 59-152 3-116 (190)
203 COG0542 clpA ATP-binding subun 97.1 0.00099 2.2E-08 67.3 6.4 91 36-129 170-274 (786)
204 COG3267 ExeA Type II secretory 97.1 0.018 3.8E-07 50.5 13.1 147 57-206 50-248 (269)
205 PRK15455 PrkA family serine pr 97.1 0.00065 1.4E-08 66.3 4.7 45 38-82 78-127 (644)
206 smart00534 MUTSac ATPase domai 97.1 0.0016 3.4E-08 55.2 6.5 145 60-206 1-183 (185)
207 PF08433 KTI12: Chromatin asso 97.1 0.0012 2.5E-08 59.4 5.9 69 59-131 2-84 (270)
208 KOG0735 AAA+-type ATPase [Post 97.1 0.0033 7.1E-08 62.2 9.3 82 39-129 670-772 (952)
209 PF06745 KaiC: KaiC; InterPro 97.1 0.00094 2E-08 58.4 5.2 77 48-127 8-125 (226)
210 KOG0727 26S proteasome regulat 97.0 0.0026 5.7E-08 55.4 7.5 81 39-128 158-259 (408)
211 KOG0743 AAA+-type ATPase [Post 97.0 0.0032 6.9E-08 59.3 8.6 62 59-128 236-297 (457)
212 PRK05342 clpX ATP-dependent pr 97.0 0.0021 4.5E-08 61.2 7.5 46 37-82 72-132 (412)
213 PF13238 AAA_18: AAA domain; P 97.0 0.00058 1.3E-08 53.6 3.2 22 61-82 1-22 (129)
214 KOG0730 AAA+-type ATPase [Post 97.0 0.0016 3.4E-08 63.9 6.7 85 37-129 434-539 (693)
215 KOG1051 Chaperone HSP104 and r 97.0 0.0045 9.8E-08 63.5 10.2 92 36-130 562-673 (898)
216 PF13671 AAA_33: AAA domain; P 97.0 0.00063 1.4E-08 54.7 3.4 23 60-82 1-23 (143)
217 COG0467 RAD55 RecA-superfamily 97.0 0.0041 8.8E-08 55.6 8.8 40 56-98 21-60 (260)
218 PRK06547 hypothetical protein; 97.0 0.0012 2.6E-08 55.2 5.0 34 48-82 6-39 (172)
219 TIGR02655 circ_KaiC circadian 97.0 0.0037 8E-08 61.1 9.0 50 46-98 250-300 (484)
220 PF00448 SRP54: SRP54-type pro 97.0 0.004 8.7E-08 53.2 8.1 38 58-98 1-38 (196)
221 PRK10865 protein disaggregatio 97.0 0.0032 6.9E-08 65.7 8.9 48 36-83 568-623 (857)
222 PF03215 Rad17: Rad17 cell cyc 96.9 0.0012 2.5E-08 64.7 5.3 59 33-96 16-78 (519)
223 cd01121 Sms Sms (bacterial rad 96.9 0.0039 8.6E-08 58.6 8.7 49 47-98 70-119 (372)
224 PRK11034 clpA ATP-dependent Cl 96.9 0.0021 4.6E-08 65.8 7.2 47 36-82 458-512 (758)
225 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0041 8.9E-08 50.3 7.6 95 57-155 25-130 (144)
226 PRK04132 replication factor C 96.9 0.0095 2.1E-07 61.4 11.8 139 63-203 569-731 (846)
227 PRK06217 hypothetical protein; 96.9 0.0022 4.7E-08 54.2 6.1 36 59-96 2-39 (183)
228 PRK07132 DNA polymerase III su 96.9 0.018 3.8E-07 52.5 12.4 159 44-202 4-184 (299)
229 PRK07667 uridine kinase; Provi 96.9 0.0015 3.3E-08 55.7 5.2 39 45-83 3-42 (193)
230 COG2607 Predicted ATPase (AAA+ 96.9 0.0056 1.2E-07 53.1 8.4 86 37-129 61-151 (287)
231 COG1066 Sms Predicted ATP-depe 96.9 0.0049 1.1E-07 57.5 8.6 78 47-128 81-179 (456)
232 cd03284 ABC_MutS1 MutS1 homolo 96.9 0.0051 1.1E-07 53.4 8.2 148 59-207 31-215 (216)
233 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0018 3.9E-08 51.5 4.9 40 43-82 6-46 (133)
234 PF01583 APS_kinase: Adenylyls 96.9 0.0026 5.7E-08 52.0 6.0 38 58-98 2-39 (156)
235 COG0464 SpoVK ATPases of the A 96.9 0.0024 5.2E-08 62.7 6.9 89 38-129 244-347 (494)
236 PRK06762 hypothetical protein; 96.9 0.00095 2.1E-08 55.3 3.5 25 58-82 2-26 (166)
237 PRK10463 hydrogenase nickel in 96.9 0.01 2.2E-07 53.6 10.1 26 57-82 103-128 (290)
238 TIGR01420 pilT_fam pilus retra 96.9 0.003 6.6E-08 58.9 7.1 90 58-150 122-228 (343)
239 PRK05973 replicative DNA helic 96.8 0.0068 1.5E-07 53.2 8.8 40 56-98 62-101 (237)
240 PRK10787 DNA-binding ATP-depen 96.8 0.0031 6.6E-08 65.0 7.5 48 36-83 322-374 (784)
241 PRK04328 hypothetical protein; 96.8 0.0063 1.4E-07 54.1 8.7 48 48-98 12-60 (249)
242 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.0085 1.8E-07 52.4 9.4 48 48-98 9-57 (229)
243 PRK08233 hypothetical protein; 96.8 0.0011 2.4E-08 55.7 3.6 25 58-82 3-27 (182)
244 cd03285 ABC_MSH2_euk MutS2 hom 96.8 0.0034 7.3E-08 54.8 6.7 149 57-208 29-218 (222)
245 cd03216 ABC_Carb_Monos_I This 96.8 0.0084 1.8E-07 49.6 8.8 95 57-155 25-145 (163)
246 PF00485 PRK: Phosphoribulokin 96.8 0.0011 2.3E-08 56.6 3.5 24 60-83 1-24 (194)
247 PF07693 KAP_NTPase: KAP famil 96.8 0.0098 2.1E-07 54.8 10.2 43 41-83 1-45 (325)
248 cd03283 ABC_MutS-like MutS-lik 96.8 0.0085 1.8E-07 51.4 9.0 24 59-82 26-49 (199)
249 cd01124 KaiC KaiC is a circadi 96.8 0.0038 8.3E-08 52.6 6.8 36 60-98 1-36 (187)
250 COG2274 SunT ABC-type bacterio 96.8 0.0045 9.8E-08 62.9 8.3 26 57-82 498-523 (709)
251 cd03222 ABC_RNaseL_inhibitor T 96.8 0.018 4E-07 48.3 10.7 106 57-167 24-146 (177)
252 PRK09270 nucleoside triphospha 96.8 0.0024 5.2E-08 56.0 5.6 27 56-82 31-57 (229)
253 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0044 9.6E-08 55.5 7.3 90 39-133 62-165 (264)
254 TIGR02858 spore_III_AA stage I 96.8 0.005 1.1E-07 55.3 7.6 106 45-154 98-231 (270)
255 PF07728 AAA_5: AAA domain (dy 96.8 0.0012 2.6E-08 53.0 3.2 63 61-129 2-77 (139)
256 cd02019 NK Nucleoside/nucleoti 96.8 0.0012 2.5E-08 46.3 2.7 23 60-82 1-23 (69)
257 PF00910 RNA_helicase: RNA hel 96.7 0.00099 2.2E-08 51.0 2.5 23 61-83 1-23 (107)
258 COG1120 FepC ABC-type cobalami 96.7 0.0059 1.3E-07 54.1 7.6 26 57-82 27-52 (258)
259 TIGR00416 sms DNA repair prote 96.7 0.0083 1.8E-07 58.0 9.3 50 46-98 81-131 (454)
260 TIGR01650 PD_CobS cobaltochela 96.7 0.0034 7.3E-08 57.5 6.2 46 35-83 44-89 (327)
261 PRK05480 uridine/cytidine kina 96.7 0.0015 3.2E-08 56.4 3.7 26 57-82 5-30 (209)
262 TIGR00235 udk uridine kinase. 96.7 0.0015 3.2E-08 56.3 3.7 26 57-82 5-30 (207)
263 COG0572 Udk Uridine kinase [Nu 96.7 0.0051 1.1E-07 52.9 6.8 27 57-83 7-33 (218)
264 PRK08699 DNA polymerase III su 96.7 0.016 3.4E-07 53.6 10.6 26 57-82 20-45 (325)
265 PF08423 Rad51: Rad51; InterP 96.7 0.0049 1.1E-07 55.0 7.0 57 47-103 26-86 (256)
266 TIGR00382 clpX endopeptidase C 96.7 0.0056 1.2E-07 58.2 7.6 46 37-82 78-140 (413)
267 PRK11823 DNA repair protein Ra 96.7 0.0093 2E-07 57.6 9.2 50 46-98 67-117 (446)
268 COG4088 Predicted nucleotide k 96.7 0.0023 4.9E-08 54.2 4.2 25 59-83 2-26 (261)
269 PF02456 Adeno_IVa2: Adenoviru 96.7 0.039 8.4E-07 49.7 12.1 41 57-98 86-126 (369)
270 PF00006 ATP-synt_ab: ATP synt 96.6 0.0049 1.1E-07 53.3 6.3 37 57-98 14-50 (215)
271 PRK03839 putative kinase; Prov 96.6 0.0016 3.4E-08 54.8 3.2 23 60-82 2-24 (180)
272 KOG1514 Origin recognition com 96.6 0.025 5.3E-07 56.2 11.6 172 36-208 396-626 (767)
273 PRK00131 aroK shikimate kinase 96.6 0.0017 3.7E-08 54.0 3.3 26 57-82 3-28 (175)
274 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0017 3.8E-08 54.7 3.4 26 57-82 2-27 (188)
275 TIGR01069 mutS2 MutS2 family p 96.6 0.005 1.1E-07 63.3 7.2 151 57-209 321-507 (771)
276 KOG3347 Predicted nucleotide k 96.6 0.0047 1E-07 49.5 5.3 26 57-82 6-31 (176)
277 PRK13765 ATP-dependent proteas 96.6 0.0041 8.8E-08 62.4 6.2 61 33-98 28-88 (637)
278 KOG2228 Origin recognition com 96.6 0.028 6.1E-07 51.2 10.7 46 37-82 25-73 (408)
279 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.018 3.9E-07 50.8 9.3 26 57-82 29-54 (254)
280 PTZ00301 uridine kinase; Provi 96.6 0.0022 4.8E-08 55.4 3.6 25 58-82 3-27 (210)
281 TIGR00390 hslU ATP-dependent p 96.5 0.0077 1.7E-07 56.9 7.3 48 36-83 12-72 (441)
282 KOG2170 ATPase of the AAA+ sup 96.5 0.0031 6.8E-08 56.3 4.5 94 36-129 82-190 (344)
283 PF00158 Sigma54_activat: Sigm 96.5 0.0036 7.7E-08 52.1 4.6 89 38-130 1-106 (168)
284 PF13481 AAA_25: AAA domain; P 96.5 0.01 2.2E-07 50.3 7.6 42 57-98 31-79 (193)
285 PRK05917 DNA polymerase III su 96.5 0.087 1.9E-06 47.7 13.8 146 44-198 5-176 (290)
286 PRK14722 flhF flagellar biosyn 96.5 0.0063 1.4E-07 57.0 6.7 26 57-82 136-161 (374)
287 PRK04040 adenylate kinase; Pro 96.5 0.0024 5.2E-08 54.2 3.6 25 58-82 2-26 (188)
288 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.012 2.6E-07 48.2 7.7 97 57-157 24-145 (157)
289 TIGR03499 FlhF flagellar biosy 96.5 0.019 4.1E-07 52.1 9.5 26 57-82 193-218 (282)
290 cd00227 CPT Chloramphenicol (C 96.5 0.0022 4.8E-08 53.7 3.3 25 58-82 2-26 (175)
291 COG0714 MoxR-like ATPases [Gen 96.5 0.0033 7.2E-08 58.3 4.7 45 36-83 24-68 (329)
292 cd03115 SRP The signal recogni 96.5 0.013 2.7E-07 48.9 7.8 24 60-83 2-25 (173)
293 PRK10733 hflB ATP-dependent me 96.5 0.0027 6E-08 64.1 4.4 87 37-129 153-256 (644)
294 TIGR02902 spore_lonB ATP-depen 96.5 0.0031 6.6E-08 62.3 4.6 46 36-82 65-110 (531)
295 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.0018 3.9E-08 54.5 2.6 23 60-82 1-23 (183)
296 TIGR02322 phosphon_PhnN phosph 96.5 0.0022 4.8E-08 53.8 3.1 24 59-82 2-25 (179)
297 PRK05201 hslU ATP-dependent pr 96.5 0.0071 1.5E-07 57.2 6.7 48 36-83 15-75 (443)
298 PRK10867 signal recognition pa 96.5 0.02 4.4E-07 54.8 9.9 26 57-82 99-124 (433)
299 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.011 2.5E-07 52.8 7.9 40 56-98 34-73 (259)
300 PF00625 Guanylate_kin: Guanyl 96.5 0.0039 8.5E-08 52.6 4.5 38 58-98 2-39 (183)
301 PF03205 MobB: Molybdopterin g 96.5 0.0053 1.1E-07 49.5 5.0 38 59-98 1-38 (140)
302 COG0396 sufC Cysteine desulfur 96.5 0.019 4.1E-07 49.6 8.5 26 57-82 29-54 (251)
303 KOG0739 AAA+-type ATPase [Post 96.5 0.015 3.2E-07 52.1 8.1 86 38-129 135-237 (439)
304 PF08298 AAA_PrkA: PrkA AAA do 96.4 0.0051 1.1E-07 56.6 5.4 47 36-82 61-112 (358)
305 KOG1970 Checkpoint RAD17-RFC c 96.4 0.013 2.7E-07 56.6 8.1 49 42-95 88-142 (634)
306 PF03308 ArgK: ArgK protein; 96.4 0.011 2.5E-07 52.0 7.1 53 45-98 15-68 (266)
307 cd02021 GntK Gluconate kinase 96.4 0.0023 4.9E-08 52.0 2.6 23 60-82 1-23 (150)
308 PRK00625 shikimate kinase; Pro 96.4 0.0026 5.7E-08 53.2 3.0 23 60-82 2-24 (173)
309 TIGR00064 ftsY signal recognit 96.4 0.017 3.7E-07 52.0 8.4 27 57-83 71-97 (272)
310 PF07726 AAA_3: ATPase family 96.4 0.0028 6E-08 49.8 2.8 27 61-90 2-28 (131)
311 cd03243 ABC_MutS_homologs The 96.4 0.012 2.7E-07 50.4 7.2 23 58-80 29-51 (202)
312 cd01130 VirB11-like_ATPase Typ 96.4 0.014 3.1E-07 49.3 7.4 25 58-82 25-49 (186)
313 COG1136 SalX ABC-type antimicr 96.4 0.021 4.6E-07 49.5 8.4 26 57-82 30-55 (226)
314 PF03266 NTPase_1: NTPase; In 96.4 0.0028 6.1E-08 52.8 2.9 22 61-82 2-23 (168)
315 PRK11889 flhF flagellar biosyn 96.3 0.029 6.3E-07 52.8 9.6 27 57-83 240-266 (436)
316 TIGR00764 lon_rel lon-related 96.3 0.013 2.9E-07 58.7 7.9 59 35-98 17-75 (608)
317 PF02367 UPF0079: Uncharacteri 96.3 0.0073 1.6E-07 47.3 4.8 26 57-82 14-39 (123)
318 PRK00889 adenylylsulfate kinas 96.3 0.0042 9.2E-08 51.9 3.7 26 57-82 3-28 (175)
319 PRK12727 flagellar biosynthesi 96.3 0.019 4.2E-07 55.9 8.6 26 57-82 349-374 (559)
320 TIGR02868 CydC thiol reductant 96.3 0.017 3.8E-07 57.1 8.7 27 56-82 359-385 (529)
321 PRK14737 gmk guanylate kinase; 96.3 0.0038 8.2E-08 52.9 3.4 26 57-82 3-28 (186)
322 COG0529 CysC Adenylylsulfate k 96.3 0.023 5.1E-07 47.0 7.8 27 57-83 22-48 (197)
323 PF00406 ADK: Adenylate kinase 96.3 0.0091 2E-07 48.6 5.6 20 63-82 1-20 (151)
324 PRK14527 adenylate kinase; Pro 96.3 0.0037 8.1E-08 53.1 3.4 26 57-82 5-30 (191)
325 cd03280 ABC_MutS2 MutS2 homolo 96.3 0.0068 1.5E-07 51.9 5.0 21 59-79 29-49 (200)
326 PF01078 Mg_chelatase: Magnesi 96.3 0.008 1.7E-07 51.3 5.3 43 37-82 4-46 (206)
327 PHA02244 ATPase-like protein 96.3 0.0063 1.4E-07 56.6 5.0 47 33-82 93-143 (383)
328 COG0563 Adk Adenylate kinase a 96.3 0.0033 7.2E-08 52.8 2.9 23 60-82 2-24 (178)
329 cd00984 DnaB_C DnaB helicase C 96.2 0.019 4E-07 50.6 7.8 40 57-98 12-51 (242)
330 TIGR00554 panK_bact pantothena 96.2 0.0062 1.3E-07 55.2 4.7 27 56-82 60-86 (290)
331 PF13245 AAA_19: Part of AAA d 96.2 0.0044 9.6E-08 44.3 3.0 25 58-82 10-34 (76)
332 PF00437 T2SE: Type II/IV secr 96.2 0.0056 1.2E-07 55.0 4.4 111 37-151 105-231 (270)
333 COG1126 GlnQ ABC-type polar am 96.2 0.022 4.7E-07 48.8 7.5 25 57-81 27-51 (240)
334 TIGR01313 therm_gnt_kin carboh 96.2 0.0029 6.4E-08 52.2 2.4 22 61-82 1-22 (163)
335 PRK13947 shikimate kinase; Pro 96.2 0.0037 8E-08 51.9 3.0 23 60-82 3-25 (171)
336 PRK00300 gmk guanylate kinase; 96.2 0.004 8.6E-08 53.4 3.2 26 57-82 4-29 (205)
337 COG1102 Cmk Cytidylate kinase 96.2 0.0036 7.9E-08 50.9 2.7 23 60-82 2-24 (179)
338 PRK09302 circadian clock prote 96.2 0.02 4.4E-07 56.4 8.6 50 46-98 260-310 (509)
339 cd02023 UMPK Uridine monophosp 96.2 0.0033 7.2E-08 53.7 2.7 23 60-82 1-23 (198)
340 PRK12339 2-phosphoglycerate ki 96.2 0.0047 1E-07 52.8 3.6 26 57-82 2-27 (197)
341 PRK12678 transcription termina 96.2 0.0092 2E-07 58.4 5.9 36 48-83 406-441 (672)
342 PRK00771 signal recognition pa 96.2 0.021 4.5E-07 54.8 8.3 27 57-83 94-120 (437)
343 COG3854 SpoIIIAA ncharacterize 96.2 0.025 5.5E-07 48.9 7.8 102 48-150 128-251 (308)
344 TIGR03263 guanyl_kin guanylate 96.2 0.0036 7.9E-08 52.5 2.8 24 59-82 2-25 (180)
345 PRK00409 recombination and DNA 96.2 0.012 2.6E-07 60.7 7.0 151 57-210 326-513 (782)
346 cd02020 CMPK Cytidine monophos 96.2 0.0037 7.9E-08 50.3 2.7 23 60-82 1-23 (147)
347 PRK14738 gmk guanylate kinase; 96.2 0.0047 1E-07 53.3 3.5 26 56-81 11-36 (206)
348 PF13086 AAA_11: AAA domain; P 96.2 0.015 3.4E-07 50.3 6.8 36 44-82 6-41 (236)
349 TIGR02030 BchI-ChlI magnesium 96.2 0.0079 1.7E-07 55.8 5.1 46 36-82 4-49 (337)
350 COG0465 HflB ATP-dependent Zn 96.2 0.0099 2.1E-07 58.6 5.9 89 38-129 152-254 (596)
351 KOG0651 26S proteasome regulat 96.1 0.014 3E-07 52.6 6.3 67 56-128 164-236 (388)
352 PRK12597 F0F1 ATP synthase sub 96.1 0.012 2.7E-07 56.5 6.5 40 57-98 142-181 (461)
353 cd02025 PanK Pantothenate kina 96.1 0.0036 7.7E-08 54.6 2.6 23 60-82 1-23 (220)
354 PRK14530 adenylate kinase; Pro 96.1 0.0043 9.3E-08 53.8 3.1 24 59-82 4-27 (215)
355 PRK14974 cell division protein 96.1 0.044 9.6E-07 50.8 9.8 26 57-82 139-164 (336)
356 cd01135 V_A-ATPase_B V/A-type 96.1 0.018 4E-07 51.4 7.1 42 57-98 68-110 (276)
357 CHL00081 chlI Mg-protoporyphyr 96.1 0.0074 1.6E-07 56.1 4.7 45 37-82 18-62 (350)
358 PRK10416 signal recognition pa 96.1 0.028 6.1E-07 51.8 8.5 27 57-83 113-139 (318)
359 PRK13407 bchI magnesium chelat 96.1 0.0071 1.5E-07 56.0 4.6 46 36-82 8-53 (334)
360 COG0468 RecA RecA/RadA recombi 96.1 0.027 5.9E-07 50.6 8.1 48 56-106 58-105 (279)
361 PRK03846 adenylylsulfate kinas 96.1 0.0088 1.9E-07 51.2 4.9 26 57-82 23-48 (198)
362 cd00464 SK Shikimate kinase (S 96.1 0.0046 1E-07 50.3 3.0 22 61-82 2-23 (154)
363 cd00071 GMPK Guanosine monopho 96.1 0.0046 9.9E-08 49.6 2.8 23 60-82 1-23 (137)
364 PRK12723 flagellar biosynthesi 96.1 0.049 1.1E-06 51.5 10.1 26 57-82 173-198 (388)
365 PRK09302 circadian clock prote 96.1 0.023 5.1E-07 56.0 8.3 50 47-98 19-69 (509)
366 PTZ00035 Rad51 protein; Provis 96.1 0.044 9.6E-07 50.9 9.6 57 47-103 106-166 (337)
367 KOG2035 Replication factor C, 96.1 0.11 2.5E-06 46.1 11.4 174 35-209 12-234 (351)
368 KOG0057 Mitochondrial Fe/S clu 96.1 0.016 3.4E-07 56.0 6.6 36 56-96 376-411 (591)
369 PLN02348 phosphoribulokinase 96.1 0.013 2.9E-07 54.9 6.0 38 46-83 37-74 (395)
370 cd02024 NRK1 Nicotinamide ribo 96.1 0.0043 9.3E-08 52.5 2.6 23 60-82 1-23 (187)
371 PRK13949 shikimate kinase; Pro 96.0 0.005 1.1E-07 51.3 2.9 24 59-82 2-25 (169)
372 cd02028 UMPK_like Uridine mono 96.0 0.0047 1E-07 52.0 2.8 23 60-82 1-23 (179)
373 KOG0652 26S proteasome regulat 96.0 0.014 3E-07 51.2 5.7 47 36-82 171-229 (424)
374 PRK08972 fliI flagellum-specif 96.0 0.014 2.9E-07 55.8 6.1 26 57-82 161-186 (444)
375 TIGR02788 VirB11 P-type DNA tr 96.0 0.023 5E-07 52.1 7.5 77 57-133 143-234 (308)
376 PLN02200 adenylate kinase fami 96.0 0.0064 1.4E-07 53.5 3.7 26 57-82 42-67 (234)
377 COG1703 ArgK Putative periplas 96.0 0.015 3.1E-07 52.2 5.8 51 47-98 39-90 (323)
378 cd03281 ABC_MSH5_euk MutS5 hom 96.0 0.024 5.2E-07 49.1 7.2 23 58-80 29-51 (213)
379 COG4608 AppF ABC-type oligopep 96.0 0.023 4.9E-07 50.4 7.0 26 57-82 38-63 (268)
380 COG4619 ABC-type uncharacteriz 96.0 0.026 5.7E-07 46.4 6.8 26 57-82 28-53 (223)
381 TIGR00959 ffh signal recogniti 96.0 0.029 6.2E-07 53.7 8.2 26 57-82 98-123 (428)
382 PRK10751 molybdopterin-guanine 96.0 0.0077 1.7E-07 50.2 3.8 27 57-83 5-31 (173)
383 COG0194 Gmk Guanylate kinase [ 96.0 0.0069 1.5E-07 50.6 3.4 25 58-82 4-28 (191)
384 PRK09519 recA DNA recombinatio 96.0 0.032 7E-07 57.0 8.8 78 47-127 47-148 (790)
385 TIGR02236 recomb_radA DNA repa 96.0 0.033 7.1E-07 51.2 8.2 61 48-108 84-148 (310)
386 PF08477 Miro: Miro-like prote 96.0 0.006 1.3E-07 47.1 2.9 23 61-83 2-24 (119)
387 PRK13975 thymidylate kinase; P 96.0 0.0066 1.4E-07 51.7 3.4 24 59-82 3-26 (196)
388 TIGR02655 circ_KaiC circadian 96.0 0.035 7.7E-07 54.3 8.8 34 49-82 11-45 (484)
389 PLN03186 DNA repair protein RA 96.0 0.036 7.7E-07 51.5 8.4 61 48-108 112-176 (342)
390 PRK05439 pantothenate kinase; 95.9 0.013 2.8E-07 53.6 5.4 27 56-82 84-110 (311)
391 PF00154 RecA: recA bacterial 95.9 0.024 5.1E-07 52.0 7.1 70 56-128 51-142 (322)
392 COG1224 TIP49 DNA helicase TIP 95.9 0.019 4.1E-07 52.6 6.3 49 34-82 37-89 (450)
393 PRK10078 ribose 1,5-bisphospho 95.9 0.0057 1.2E-07 51.7 2.9 24 59-82 3-26 (186)
394 PRK04301 radA DNA repair and r 95.9 0.031 6.7E-07 51.6 7.9 63 47-109 90-156 (317)
395 COG4618 ArpD ABC-type protease 95.9 0.03 6.5E-07 53.7 7.8 26 57-82 361-386 (580)
396 KOG1532 GTPase XAB1, interacts 95.9 0.0086 1.9E-07 52.9 3.9 28 56-83 17-44 (366)
397 PF10662 PduV-EutP: Ethanolami 95.9 0.15 3.3E-06 41.0 10.8 24 59-82 2-25 (143)
398 PRK14532 adenylate kinase; Pro 95.9 0.0059 1.3E-07 51.7 2.9 22 61-82 3-24 (188)
399 PRK05537 bifunctional sulfate 95.9 0.014 2.9E-07 58.1 5.8 49 35-83 368-417 (568)
400 PRK06761 hypothetical protein; 95.9 0.0098 2.1E-07 53.6 4.3 35 58-94 3-37 (282)
401 KOG3928 Mitochondrial ribosome 95.9 0.07 1.5E-06 49.9 9.9 46 36-81 155-203 (461)
402 cd00820 PEPCK_HprK Phosphoenol 95.9 0.0083 1.8E-07 45.7 3.3 23 57-79 14-36 (107)
403 cd02027 APSK Adenosine 5'-phos 95.9 0.0061 1.3E-07 49.6 2.7 23 60-82 1-23 (149)
404 cd01428 ADK Adenylate kinase ( 95.9 0.0062 1.3E-07 51.6 2.9 22 61-82 2-23 (194)
405 COG0055 AtpD F0F1-type ATP syn 95.9 0.014 3.1E-07 53.7 5.2 28 57-84 146-173 (468)
406 PRK08927 fliI flagellum-specif 95.9 0.019 4.1E-07 54.9 6.3 27 56-82 156-182 (442)
407 cd04159 Arl10_like Arl10-like 95.9 0.029 6.3E-07 45.1 6.7 21 61-81 2-22 (159)
408 PRK14531 adenylate kinase; Pro 95.9 0.0075 1.6E-07 50.9 3.3 24 59-82 3-26 (183)
409 PF06068 TIP49: TIP49 C-termin 95.9 0.016 3.6E-07 53.6 5.6 48 35-82 23-74 (398)
410 PRK05057 aroK shikimate kinase 95.8 0.0075 1.6E-07 50.4 3.1 25 58-82 4-28 (172)
411 PHA02530 pseT polynucleotide k 95.8 0.0076 1.6E-07 55.0 3.4 24 59-82 3-26 (300)
412 PF13521 AAA_28: AAA domain; P 95.8 0.0075 1.6E-07 49.7 3.1 21 61-81 2-22 (163)
413 PRK08149 ATP synthase SpaL; Va 95.8 0.016 3.4E-07 55.3 5.5 26 57-82 150-175 (428)
414 TIGR00073 hypB hydrogenase acc 95.8 0.029 6.2E-07 48.3 6.8 27 56-82 20-46 (207)
415 COG1936 Predicted nucleotide k 95.8 0.0066 1.4E-07 50.0 2.6 20 60-79 2-21 (180)
416 PRK13946 shikimate kinase; Pro 95.8 0.0074 1.6E-07 51.0 3.0 25 58-82 10-34 (184)
417 PRK13948 shikimate kinase; Pro 95.8 0.0082 1.8E-07 50.6 3.3 26 57-82 9-34 (182)
418 PF07724 AAA_2: AAA domain (Cd 95.8 0.0097 2.1E-07 49.7 3.7 73 57-131 2-82 (171)
419 cd00561 CobA_CobO_BtuR ATP:cor 95.8 0.085 1.8E-06 43.3 9.1 25 59-83 3-27 (159)
420 PRK04220 2-phosphoglycerate ki 95.8 0.014 3E-07 52.9 4.9 26 57-82 91-116 (301)
421 PRK13657 cyclic beta-1,2-gluca 95.8 0.037 7.9E-07 55.6 8.4 26 57-82 360-385 (588)
422 PF03969 AFG1_ATPase: AFG1-lik 95.8 0.0084 1.8E-07 56.2 3.5 95 57-151 61-167 (362)
423 TIGR02782 TrbB_P P-type conjug 95.8 0.04 8.6E-07 50.4 7.8 24 59-82 133-156 (299)
424 cd01132 F1_ATPase_alpha F1 ATP 95.8 0.024 5.3E-07 50.6 6.2 25 57-81 68-93 (274)
425 PRK10646 ADP-binding protein; 95.8 0.018 3.9E-07 46.9 4.9 41 42-82 11-52 (153)
426 TIGR03305 alt_F1F0_F1_bet alte 95.8 0.023 5E-07 54.4 6.4 40 57-98 137-176 (449)
427 TIGR03375 type_I_sec_LssB type 95.7 0.037 8.1E-07 56.7 8.4 27 56-82 489-515 (694)
428 TIGR03574 selen_PSTK L-seryl-t 95.7 0.007 1.5E-07 53.8 2.7 24 60-83 1-24 (249)
429 TIGR00958 3a01208 Conjugate Tr 95.7 0.047 1E-06 56.2 9.1 27 56-82 505-531 (711)
430 PRK05703 flhF flagellar biosyn 95.7 0.061 1.3E-06 51.6 9.2 25 58-82 221-245 (424)
431 PF03193 DUF258: Protein of un 95.7 0.014 3.1E-07 47.9 4.2 36 43-82 24-59 (161)
432 COG1428 Deoxynucleoside kinase 95.7 0.0097 2.1E-07 50.7 3.2 25 58-82 4-28 (216)
433 COG4778 PhnL ABC-type phosphon 95.7 0.016 3.4E-07 47.8 4.3 36 57-96 36-71 (235)
434 COG1116 TauB ABC-type nitrate/ 95.7 0.009 1.9E-07 52.2 3.1 26 57-82 28-53 (248)
435 COG1124 DppF ABC-type dipeptid 95.7 0.0085 1.8E-07 52.1 2.9 26 57-82 32-57 (252)
436 cd03286 ABC_MSH6_euk MutS6 hom 95.7 0.028 6.1E-07 48.8 6.2 101 57-158 29-159 (218)
437 CHL00059 atpA ATP synthase CF1 95.7 0.03 6.5E-07 54.0 6.9 25 57-81 140-164 (485)
438 PF13604 AAA_30: AAA domain; P 95.7 0.02 4.2E-07 49.0 5.2 92 57-152 17-131 (196)
439 PF03029 ATP_bind_1: Conserved 95.7 0.013 2.8E-07 51.7 4.1 33 63-98 1-33 (238)
440 KOG0058 Peptide exporter, ABC 95.7 0.036 7.8E-07 55.3 7.5 26 57-82 493-518 (716)
441 PRK12338 hypothetical protein; 95.7 0.01 2.3E-07 54.2 3.6 26 57-82 3-28 (319)
442 TIGR02524 dot_icm_DotB Dot/Icm 95.7 0.028 6.2E-07 52.6 6.6 33 48-82 126-158 (358)
443 PRK04182 cytidylate kinase; Pr 95.7 0.0093 2E-07 49.8 3.1 23 60-82 2-24 (180)
444 PTZ00088 adenylate kinase 1; P 95.7 0.0086 1.9E-07 52.4 3.0 24 59-82 7-30 (229)
445 PF13555 AAA_29: P-loop contai 95.7 0.012 2.6E-07 40.1 3.0 24 59-82 24-47 (62)
446 PRK09825 idnK D-gluconate kina 95.7 0.01 2.2E-07 49.9 3.2 25 58-82 3-27 (176)
447 PF00005 ABC_tran: ABC transpo 95.7 0.011 2.3E-07 47.1 3.3 35 57-95 10-44 (137)
448 TIGR01425 SRP54_euk signal rec 95.7 0.084 1.8E-06 50.4 9.8 26 57-82 99-124 (429)
449 COG2804 PulE Type II secretory 95.7 0.067 1.4E-06 51.5 9.1 81 45-130 247-340 (500)
450 PF03796 DnaB_C: DnaB-like hel 95.7 0.047 1E-06 48.7 7.8 40 57-98 18-57 (259)
451 PRK11174 cysteine/glutathione 95.7 0.061 1.3E-06 54.0 9.4 27 56-82 374-400 (588)
452 PRK05399 DNA mismatch repair p 95.7 0.037 8E-07 57.9 8.0 151 57-209 606-794 (854)
453 PRK06936 type III secretion sy 95.7 0.024 5.2E-07 54.2 6.0 26 57-82 161-186 (439)
454 TIGR02173 cyt_kin_arch cytidyl 95.6 0.01 2.2E-07 49.2 3.1 23 60-82 2-24 (171)
455 TIGR03496 FliI_clade1 flagella 95.6 0.029 6.4E-07 53.4 6.6 26 57-82 136-161 (411)
456 PRK12726 flagellar biosynthesi 95.6 0.056 1.2E-06 50.6 8.2 39 57-98 205-243 (407)
457 PRK15453 phosphoribulokinase; 95.6 0.011 2.4E-07 52.9 3.5 26 57-82 4-29 (290)
458 TIGR01351 adk adenylate kinase 95.6 0.009 2E-07 51.6 2.9 22 61-82 2-23 (210)
459 TIGR03796 NHPM_micro_ABC1 NHPM 95.6 0.045 9.7E-07 56.3 8.4 27 56-82 503-529 (710)
460 smart00072 GuKc Guanylate kina 95.6 0.012 2.7E-07 49.6 3.7 25 58-82 2-26 (184)
461 TIGR03880 KaiC_arch_3 KaiC dom 95.6 0.025 5.5E-07 49.2 5.6 48 48-98 5-53 (224)
462 PRK14528 adenylate kinase; Pro 95.6 0.011 2.4E-07 50.1 3.2 24 59-82 2-25 (186)
463 TIGR01039 atpD ATP synthase, F 95.6 0.033 7.1E-07 53.5 6.6 26 57-82 142-167 (461)
464 PRK03731 aroL shikimate kinase 95.6 0.011 2.3E-07 49.2 3.0 24 59-82 3-26 (171)
465 cd01134 V_A-ATPase_A V/A-type 95.5 0.033 7.2E-07 51.5 6.3 37 57-98 156-192 (369)
466 cd01672 TMPK Thymidine monopho 95.5 0.011 2.5E-07 50.0 3.2 24 60-83 2-25 (200)
467 TIGR02768 TraA_Ti Ti-type conj 95.5 0.043 9.3E-07 56.5 7.9 89 59-151 369-476 (744)
468 cd03282 ABC_MSH4_euk MutS4 hom 95.5 0.017 3.6E-07 49.7 4.2 101 57-158 28-157 (204)
469 PRK12724 flagellar biosynthesi 95.5 0.045 9.8E-07 52.0 7.3 25 58-82 223-247 (432)
470 KOG1350 F0F1-type ATP synthase 95.5 0.019 4.2E-07 51.6 4.6 86 3-90 132-223 (521)
471 KOG0726 26S proteasome regulat 95.5 0.02 4.4E-07 51.1 4.7 89 37-128 186-289 (440)
472 PRK11176 lipid transporter ATP 95.5 0.053 1.1E-06 54.4 8.4 27 56-82 367-393 (582)
473 PRK00279 adk adenylate kinase; 95.5 0.011 2.3E-07 51.4 3.0 23 60-82 2-24 (215)
474 TIGR03324 alt_F1F0_F1_al alter 95.5 0.039 8.5E-07 53.4 7.0 26 57-82 161-187 (497)
475 PRK02496 adk adenylate kinase; 95.5 0.011 2.4E-07 49.8 3.0 23 60-82 3-25 (184)
476 COG3840 ThiQ ABC-type thiamine 95.5 0.063 1.4E-06 44.9 7.2 38 57-98 24-61 (231)
477 TIGR02525 plasmid_TraJ plasmid 95.5 0.04 8.8E-07 51.8 7.0 76 58-134 149-242 (372)
478 PRK09280 F0F1 ATP synthase sub 95.5 0.036 7.8E-07 53.3 6.7 27 57-83 143-169 (463)
479 COG5635 Predicted NTPase (NACH 95.5 0.0085 1.8E-07 62.5 2.6 152 57-208 221-427 (824)
480 PRK07594 type III secretion sy 95.5 0.025 5.5E-07 54.0 5.5 26 57-82 154-179 (433)
481 PRK08356 hypothetical protein; 95.5 0.013 2.9E-07 49.9 3.3 22 58-79 5-26 (195)
482 COG0703 AroK Shikimate kinase 95.5 0.014 3E-07 48.4 3.2 25 59-83 3-27 (172)
483 PRK01184 hypothetical protein; 95.4 0.012 2.6E-07 49.6 3.0 23 59-82 2-24 (184)
484 PRK14721 flhF flagellar biosyn 95.4 0.058 1.3E-06 51.4 7.8 26 57-82 190-215 (420)
485 cd03269 ABC_putative_ATPase Th 95.4 0.02 4.4E-07 49.3 4.4 35 57-95 25-59 (210)
486 TIGR03797 NHPM_micro_ABC2 NHPM 95.4 0.05 1.1E-06 55.7 8.0 27 56-82 477-503 (686)
487 PF00488 MutS_V: MutS domain V 95.4 0.0061 1.3E-07 53.7 1.1 145 59-207 44-228 (235)
488 COG4136 ABC-type uncharacteriz 95.4 0.053 1.1E-06 43.8 6.3 41 57-98 27-67 (213)
489 TIGR00176 mobB molybdopterin-g 95.4 0.018 3.9E-07 47.2 3.8 33 60-94 1-33 (155)
490 KOG0738 AAA+-type ATPase [Post 95.4 0.025 5.3E-07 52.5 4.9 83 38-128 214-315 (491)
491 TIGR02533 type_II_gspE general 95.4 0.086 1.9E-06 51.5 9.1 88 39-131 224-325 (486)
492 TIGR00041 DTMP_kinase thymidyl 95.4 0.015 3.2E-07 49.4 3.4 26 58-83 3-28 (195)
493 COG1419 FlhF Flagellar GTP-bin 95.4 0.085 1.8E-06 49.5 8.5 41 57-98 202-242 (407)
494 COG2019 AdkA Archaeal adenylat 95.4 0.017 3.8E-07 47.2 3.5 25 58-82 4-28 (189)
495 PRK07196 fliI flagellum-specif 95.4 0.037 8.1E-07 52.9 6.3 26 57-82 154-179 (434)
496 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.4 0.021 4.5E-07 49.5 4.3 35 57-95 29-63 (218)
497 TIGR01663 PNK-3'Pase polynucle 95.4 0.032 6.9E-07 54.8 6.0 65 56-129 367-431 (526)
498 TIGR02857 CydD thiol reductant 95.4 0.066 1.4E-06 53.0 8.4 27 56-82 346-372 (529)
499 PRK10790 putative multidrug tr 95.4 0.082 1.8E-06 53.1 9.1 27 56-82 365-391 (592)
500 TIGR00960 3a0501s02 Type II (G 95.4 0.021 4.5E-07 49.4 4.3 35 57-95 28-62 (216)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-47 Score=385.19 Aligned_cols=281 Identities=38% Similarity=0.665 Sum_probs=249.6
Q ss_pred cchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--------------------
Q 039134 39 KGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV-------------------- 98 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-------------------- 98 (339)
||.+..++++.+.|.++ +..+++|+||||+||||||+++.++...++.+|+.++|+.++
T Consensus 161 VG~e~~~~kl~~~L~~d-~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMED-DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred ccHHHHHHHHHHHhccC-CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 99999999999999998 559999999999999999999999994489999999999999
Q ss_pred ---CCCCHHHHHHHHHHHhcCCceEEEEecCCCCCCcccccCC---CCCCceEEEeCCChHHHhh-cCCCceEEecCCCC
Q 039134 99 ---DNKNQQGRAEEIFQRLSQRRFALLLDDLRGPINLDEAGVP---DQNGSKIVFTTIMEDACNT-MGDQIKFKVDYLRR 171 (339)
Q Consensus 99 ---~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~l~~l~~~---~~~~~~ilvTsR~~~~~~~-~~~~~~~~l~~L~~ 171 (339)
.....+.....+.+.|+++|++||+||+|+..+|+.++.| ..+||+|++|||+..++.. ++....++++.|+.
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence 1223357778888999999999999999999999999766 5578999999999999887 67778899999999
Q ss_pred cc-----------CccCCChhHHHHHHHHHHHcCCChHHHHHHHHHhccCC--------------------CCCCcChhH
Q 039134 172 DD-----------DVLNFHPDILELAETVADLCRGLPLAHITIGRAMANTR--------------------NRMGDLILP 220 (339)
Q Consensus 172 ~~-----------~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~~--------------------~~~~~~~~~ 220 (339)
++ .....++.++++++++++.|+|+|||++++|..|+.+. ....+.+..
T Consensus 320 ~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~ 399 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILP 399 (889)
T ss_pred cccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHH
Confidence 99 22334455899999999999999999999999999987 123568889
Q ss_pred HHHHhhcCCCcchhhHHHhHhcccCCCCcccHHHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHHhCCceeeecCC-Cc
Q 039134 221 RLKFSYDHLSTETHKTCFSFCSLFLKNQLIRKDELVDLWIGEGLFRGSHNIVVARMQGKCIIDSLIGVCLLEEVQTS-FG 299 (339)
Q Consensus 221 ~l~~~~~~L~~~~~k~~~~~la~f~~~~~i~~~~li~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~-~~ 299 (339)
++.+||+.|++ ..|.||+|||+||+|+.|+.+.|+..|+|+|++.+..+...+++.+..++++|++++|+...... ..
T Consensus 400 iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 400 ILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred hhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 99999999996 99999999999999999999999999999999999767788899999999999999999987531 25
Q ss_pred CeEEeChHHHHHHHHHHhcccc
Q 039134 300 NYVKMHDLLRDLALWIASQDEG 321 (339)
Q Consensus 300 ~~~~~H~lv~~~a~~~~~~~~~ 321 (339)
.+|.|||+||++|.+++++.++
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~ 500 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGK 500 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccc
Confidence 8999999999999999995444
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.6e-38 Score=286.63 Aligned_cols=226 Identities=25% Similarity=0.457 Sum_probs=179.1
Q ss_pred hhHHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec------------------C--
Q 039134 41 MESILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------------------D-- 99 (339)
Q Consensus 41 R~~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------------------~-- 99 (339)
||.++++|.+.|... ++.++|+|+|+||+||||||.+++++. ..+..|+.++|+.++ .
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 899999999999982 489999999999999999999999996 467999999999988 1
Q ss_pred ----CCCHHHHHHHHHHHhcCCceEEEEecCCCCCCcccccCC---CCCCceEEEeCCChHHHhhcCC-CceEEecCCCC
Q 039134 100 ----NKNQQGRAEEIFQRLSQRRFALLLDDLRGPINLDEAGVP---DQNGSKIVFTTIMEDACNTMGD-QIKFKVDYLRR 171 (339)
Q Consensus 100 ----~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~l~~l~~~---~~~~~~ilvTsR~~~~~~~~~~-~~~~~l~~L~~ 171 (339)
..+.+.....+.+.+.++++||||||+|+...|+.+... ...+++||+|||+..++..... ...+++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 235677888889999999999999999999888776433 4568999999999887655443 67899999999
Q ss_pred cc-------Cc---c-CCChhHHHHHHHHHHHcCCChHHHHHHHHHhccCC----------------C---CCCcChhHH
Q 039134 172 DD-------DV---L-NFHPDILELAETVADLCRGLPLAHITIGRAMANTR----------------N---RMGDLILPR 221 (339)
Q Consensus 172 ~~-------~~---~-~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~~----------------~---~~~~~~~~~ 221 (339)
++ .. . ...+...+.+++|++.|+|+||||.++|++|+.+. . .....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 98 11 1 12345577899999999999999999999995432 1 235689999
Q ss_pred HHHhhcCCCcchhhHHHhHhcccCCCCcccHHHHHHHHHHcCCCccC
Q 039134 222 LKFSYDHLSTETHKTCFSFCSLFLKNQLIRKDELVDLWIGEGLFRGS 268 (339)
Q Consensus 222 l~~~~~~L~~~~~k~~~~~la~f~~~~~i~~~~li~~w~a~~~~~~~ 268 (339)
+..||+.|++ .+|+||.+||+||.+..|+.+.|+.+|+++|++...
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999 999999999999999999999999999999998764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-34 Score=305.85 Aligned_cols=265 Identities=21% Similarity=0.310 Sum_probs=211.4
Q ss_pred cccccchhHHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---CC------C---
Q 039134 35 LSVKKGMESILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---DN------K--- 101 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---~~------~--- 101 (339)
.+.+|||+..+++|..++..+ +..++++|+||||+||||||+.+|++.. ..|++.+|+... .. .
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~---~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS---RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh---hcCCeEEEeeccccccchhhccccccc
Confidence 356899999999999988643 5789999999999999999999999884 788888887531 00 0
Q ss_pred --C--H---HH--------------HHHHHHHHhcCCceEEEEecCCCCCCcccccCC---CCCCceEEEeCCChHHHhh
Q 039134 102 --N--Q---QG--------------RAEEIFQRLSQRRFALLLDDLRGPINLDEAGVP---DQNGSKIVFTTIMEDACNT 157 (339)
Q Consensus 102 --~--~---~~--------------~~~~l~~~l~~k~~LlvlDdv~~~~~l~~l~~~---~~~~~~ilvTsR~~~~~~~ 157 (339)
+ . .. ....+++.+.++++||||||||+..+|+.+... .+.|++||||||+..++..
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 0 0 00 113456778899999999999999888887432 4679999999999999877
Q ss_pred cCCCceEEecCCCCcc-------Ccc---CCChhHHHHHHHHHHHcCCChHHHHHHHHHhccCC------------CCCC
Q 039134 158 MGDQIKFKVDYLRRDD-------DVL---NFHPDILELAETVADLCRGLPLAHITIGRAMANTR------------NRMG 215 (339)
Q Consensus 158 ~~~~~~~~l~~L~~~~-------~~~---~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~~------------~~~~ 215 (339)
.+...+|++..|++++ .++ ...+...+++.++++.|+|+||||+++|++|+.+. ....
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~ 419 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLD 419 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCcc
Confidence 6677899999999887 122 23345678999999999999999999999999876 2344
Q ss_pred cChhHHHHHhhcCCCcchhhHHHhHhcccCCCCcccHHHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHHhCCceeeec
Q 039134 216 DLILPRLKFSYDHLSTETHKTCFSFCSLFLKNQLIRKDELVDLWIGEGLFRGSHNIVVARMQGKCIIDSLIGVCLLEEVQ 295 (339)
Q Consensus 216 ~~~~~~l~~~~~~L~~~~~k~~~~~la~f~~~~~i~~~~li~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~ 295 (339)
..+...|+.||+.|+++..|.||+++|+|+.+..++. +..|++.+..... ..++.|+++|||+..
T Consensus 420 ~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~~~-----------~~l~~L~~ksLi~~~- 484 (1153)
T PLN03210 420 GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLANSDLDVN-----------IGLKNLVDKSLIHVR- 484 (1153)
T ss_pred HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH---HHHHHHhcCCCch-----------hChHHHHhcCCEEEc-
Confidence 5789999999999987468999999999998765543 6667776544322 238999999999886
Q ss_pred CCCcCeEEeChHHHHHHHHHHhccc
Q 039134 296 TSFGNYVKMHDLLRDLALWIASQDE 320 (339)
Q Consensus 296 ~~~~~~~~~H~lv~~~a~~~~~~~~ 320 (339)
.+.+.||+|+|++|+++++++.
T Consensus 485 ---~~~~~MHdLl~~~~r~i~~~~~ 506 (1153)
T PLN03210 485 ---EDIVEMHSLLQEMGKEIVRAQS 506 (1153)
T ss_pred ---CCeEEhhhHHHHHHHHHHHhhc
Confidence 5689999999999999998875
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.63 E-value=2.7e-14 Score=149.38 Aligned_cols=258 Identities=13% Similarity=0.130 Sum_probs=166.2
Q ss_pred CccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCC-----------
Q 039134 33 DTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNK----------- 101 (339)
Q Consensus 33 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~----------- 101 (339)
+.++.+|-|...++++.. ....++++|+||+|.||||++.++++.. . .++|+++....
T Consensus 11 ~~~~~~~~R~rl~~~l~~----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSG----ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred CCccccCcchHHHHHHhc----ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHH
Confidence 345677889877766643 2356899999999999999999988643 2 58899886100
Q ss_pred ------------------------CHHHHHHHHHHHhc--CCceEEEEecCCCCCC--cc-cc--cCC-CCCCceEEEeC
Q 039134 102 ------------------------NQQGRAEEIFQRLS--QRRFALLLDDLRGPIN--LD-EA--GVP-DQNGSKIVFTT 149 (339)
Q Consensus 102 ------------------------~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~~--l~-~l--~~~-~~~~~~ilvTs 149 (339)
+.......+...+. +.+++|||||+...+. +. .+ ... ...+.++|+||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 01112222333332 5789999999965432 11 12 122 45677888999
Q ss_pred CChHHHh--hc-CCCceEEec----CCCCcc-----CccCCChhHHHHHHHHHHHcCCChHHHHHHHHHhccCCC-----
Q 039134 150 IMEDACN--TM-GDQIKFKVD----YLRRDD-----DVLNFHPDILELAETVADLCRGLPLAHITIGRAMANTRN----- 212 (339)
Q Consensus 150 R~~~~~~--~~-~~~~~~~l~----~L~~~~-----~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~~~----- 212 (339)
|...... .. -......+. +|+.+| ......+...+.+..+++.|+|+|+++..++..++....
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~ 239 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDS 239 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh
Confidence 9742111 10 112234454 888888 112223345677889999999999999999887754431
Q ss_pred -----C-CCcChhHHHHHh-hcCCCcchhhHHHhHhcccCCCCcccHHHHHHHHHHcCCCccCCchhhHHHHHHHHHHHH
Q 039134 213 -----R-MGDLILPRLKFS-YDHLSTETHKTCFSFCSLFLKNQLIRKDELVDLWIGEGLFRGSHNIVVARMQGKCIIDSL 285 (339)
Q Consensus 213 -----~-~~~~~~~~l~~~-~~~L~~~~~k~~~~~la~f~~~~~i~~~~li~~w~a~~~~~~~~~~~~~~~~~~~~l~~L 285 (339)
. ....+...+... +..||+ ..+.++..+|+++ .++.+.+-.+. .. ..+...+++|
T Consensus 240 ~~~~~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~l~~~l~------~~--------~~~~~~L~~l 301 (903)
T PRK04841 240 ARRLAGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDALIVRVT------GE--------ENGQMRLEEL 301 (903)
T ss_pred hHhhcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHHHHHHHc------CC--------CcHHHHHHHH
Confidence 1 123455555444 899999 9999999999986 34433222211 11 2346779999
Q ss_pred HhCCceeeecCCCcCeEEeChHHHHHHHHHHhcc
Q 039134 286 IGVCLLEEVQTSFGNYVKMHDLLRDLALWIASQD 319 (339)
Q Consensus 286 ~~~sLi~~~~~~~~~~~~~H~lv~~~a~~~~~~~ 319 (339)
.+.+++.....+....|++|++++++++.....+
T Consensus 302 ~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 302 ERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 9999976432222458999999999999887443
No 5
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.44 E-value=2.5e-12 Score=131.93 Aligned_cols=268 Identities=16% Similarity=0.144 Sum_probs=172.5
Q ss_pred ccchhHHHHHHHHHhhc--CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec-----------------
Q 039134 38 KKGMESILDEVWECFED--DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV----------------- 98 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~----------------- 98 (339)
++||+.+++.|.+.+.. .....++.+.|.+|||||+|+++|.....+.+..|-...+-...
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 69999999999999986 24678999999999999999999999885443333211111111
Q ss_pred ------------------------------------------------CCCCHHHHHH-----HHHHHh-cCCceEEEEe
Q 039134 99 ------------------------------------------------DNKNQQGRAE-----EIFQRL-SQRRFALLLD 124 (339)
Q Consensus 99 ------------------------------------------------~~~~~~~~~~-----~l~~~l-~~k~~LlvlD 124 (339)
.+...+.+.. .+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 0111122222 112222 3569999999
Q ss_pred cC-CCCCCcccc----cCCC------CCCceEEEeCCCh--HHHhhcCCCceEEecCCCCcc------CccCC-ChhHHH
Q 039134 125 DL-RGPINLDEA----GVPD------QNGSKIVFTTIME--DACNTMGDQIKFKVDYLRRDD------DVLNF-HPDILE 184 (339)
Q Consensus 125 dv-~~~~~l~~l----~~~~------~~~~~ilvTsR~~--~~~~~~~~~~~~~l~~L~~~~------~~~~~-~~~~~~ 184 (339)
|+ |.+.....+ .... .+....+.|.+.. ...........+.|.||+..+ ..... ......
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~~p 241 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLPAP 241 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccccch
Confidence 99 666442222 1101 1123333344433 112222344789999999999 22233 455678
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhccCC--------------------CCCCcChhHHHHHhhcCCCcchhhHHHhHhccc
Q 039134 185 LAETVADLCRGLPLAHITIGRAMANTR--------------------NRMGDLILPRLKFSYDHLSTETHKTCFSFCSLF 244 (339)
Q Consensus 185 ~~~~i~~~~~G~Plal~~~~~~L~~~~--------------------~~~~~~~~~~l~~~~~~L~~~~~k~~~~~la~f 244 (339)
..+.+++++.|+|+++..+...+..+. ....+.+...+....++||. .++..+...||+
T Consensus 242 ~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~-~t~~Vl~~AA~i 320 (849)
T COG3899 242 LLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPG-TTREVLKAAACI 320 (849)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Confidence 899999999999999999999998764 12222355578999999999 999999999999
Q ss_pred CCCCcccHHHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHHhCCceeeecCC----CcC---eEEeChHHHHHHHHHHh
Q 039134 245 LKNQLIRKDELVDLWIGEGLFRGSHNIVVARMQGKCIIDSLIGVCLLEEVQTS----FGN---YVKMHDLLRDLALWIAS 317 (339)
Q Consensus 245 ~~~~~i~~~~li~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~----~~~---~~~~H~lv~~~a~~~~~ 317 (339)
.. .++...|..+|.. ....++.+.++.|....++-..+.+ ... +-+.|+++|+.|.....
T Consensus 321 G~--~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 321 GN--RFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred Cc--cCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCc
Confidence 76 4555566665421 3345666667777766666432211 122 33889999999976655
Q ss_pred cc
Q 039134 318 QD 319 (339)
Q Consensus 318 ~~ 319 (339)
+.
T Consensus 388 ~~ 389 (849)
T COG3899 388 ES 389 (849)
T ss_pred hh
Confidence 43
No 6
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.40 E-value=1.1e-11 Score=122.20 Aligned_cols=260 Identities=14% Similarity=0.127 Sum_probs=173.8
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec----------------
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---------------- 98 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---------------- 98 (339)
++..|-|...++. |......+.++|..|+|.|||||+.+.+... ..-..+.|+++.
T Consensus 18 ~~~~v~R~rL~~~----L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 18 PDNYVVRPRLLDR----LRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred cccccccHHHHHH----HhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHH
Confidence 4556888765554 5544467999999999999999999998854 344579999987
Q ss_pred -------------------CCCCHHHHHHHHHHHhc--CCceEEEEecCCCCCC------cccccCCCCCCceEEEeCCC
Q 039134 99 -------------------DNKNQQGRAEEIFQRLS--QRRFALLLDDLRGPIN------LDEAGVPDQNGSKIVFTTIM 151 (339)
Q Consensus 99 -------------------~~~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~~------l~~l~~~~~~~~~ilvTsR~ 151 (339)
...+.......+.+.+. .+++.+||||..-..+ +..+......+...|+|||+
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 22334445555555554 4689999999854322 23332226778899999998
Q ss_pred hHHHhhcC---CCceEEe----cCCCCcc-----CccCCChhHHHHHHHHHHHcCCChHHHHHHHHHhccCC--------
Q 039134 152 EDACNTMG---DQIKFKV----DYLRRDD-----DVLNFHPDILELAETVADLCRGLPLAHITIGRAMANTR-------- 211 (339)
Q Consensus 152 ~~~~~~~~---~~~~~~l----~~L~~~~-----~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~~-------- 211 (339)
..-..... ....+++ -.|+.+| ......+-....++.++..++|.+-++.+++=.++.+.
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~ 249 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRG 249 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhh
Confidence 64322111 0111111 1233333 22233444566788999999999999999998888333
Q ss_pred -CCCCcChhHH-HHHhhcCCCcchhhHHHhHhcccCCCCcccHHHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHHhCC
Q 039134 212 -NRMGDLILPR-LKFSYDHLSTETHKTCFSFCSLFLKNQLIRKDELVDLWIGEGLFRGSHNIVVARMQGKCIIDSLIGVC 289 (339)
Q Consensus 212 -~~~~~~~~~~-l~~~~~~L~~~~~k~~~~~la~f~~~~~i~~~~li~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~s 289 (339)
......+... .+.-++.||+ +++..+..+|+++. +..+ |...- +-++.+..+|++|.+++
T Consensus 250 LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~---f~~e-L~~~L-------------tg~~ng~amLe~L~~~g 311 (894)
T COG2909 250 LSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSR---FNDE-LCNAL-------------TGEENGQAMLEELERRG 311 (894)
T ss_pred ccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHH---hhHH-HHHHH-------------hcCCcHHHHHHHHHhCC
Confidence 2222333333 3457789999 99999999999963 3322 22211 12245667899999999
Q ss_pred ceeeecCCCcCeEEeChHHHHHHHHHHhccc
Q 039134 290 LLEEVQTSFGNYVKMHDLLRDLALWIASQDE 320 (339)
Q Consensus 290 Li~~~~~~~~~~~~~H~lv~~~a~~~~~~~~ 320 (339)
|+-..-++....|+.|+|..+|.+...+.+.
T Consensus 312 LFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 312 LFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred CceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 9986655568999999999999988877643
No 7
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.26 E-value=5.6e-11 Score=109.01 Aligned_cols=238 Identities=16% Similarity=0.109 Sum_probs=135.3
Q ss_pred ccccchhHHHHHHHHHhhc----CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHH
Q 039134 36 SVKKGMESILDEVWECFED----DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIF 111 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 111 (339)
..|||++..+++|..++.. ....+.++|+|++|+|||+||+.+++... ..+. .+..............+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~---~~~~---~~~~~~~~~~~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG---VNLK---ITSGPALEKPGDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCEE---EeccchhcCchhHHHHHH
Confidence 4589999999999998874 22456789999999999999999999873 2221 111111112222222222
Q ss_pred HHhcCCceEEEEecCCCCCC--ccccc----------------------CCCCCCceEEEeCCChHHHhhc--CCCceEE
Q 039134 112 QRLSQRRFALLLDDLRGPIN--LDEAG----------------------VPDQNGSKIVFTTIMEDACNTM--GDQIKFK 165 (339)
Q Consensus 112 ~~l~~k~~LlvlDdv~~~~~--l~~l~----------------------~~~~~~~~ilvTsR~~~~~~~~--~~~~~~~ 165 (339)
. + +...+|++|+++.... .+.+. .+....+.|..|++...+.... .....+.
T Consensus 78 ~-~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~ 155 (305)
T TIGR00635 78 N-L-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILR 155 (305)
T ss_pred h-c-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEE
Confidence 2 2 3456888888864321 11110 0011234455567754332211 1234678
Q ss_pred ecCCCCcc--------CccCCChhHHHHHHHHHHHcCCChHHHHHHHHHhcc-----CCCCCC----cChhHHHHHhhcC
Q 039134 166 VDYLRRDD--------DVLNFHPDILELAETVADLCRGLPLAHITIGRAMAN-----TRNRMG----DLILPRLKFSYDH 228 (339)
Q Consensus 166 l~~L~~~~--------~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~-----~~~~~~----~~~~~~l~~~~~~ 228 (339)
+.+++.++ .......-.++.+..|++.|+|.|..+..++..+.. +..... ......+...+..
T Consensus 156 l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l~~~~~~ 235 (305)
T TIGR00635 156 LEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLMIDELG 235 (305)
T ss_pred eCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCCCC
Confidence 99999888 011122334667788999999999877666554321 111111 1222334556777
Q ss_pred CCcchhhHHHhHh-cccCCCCcccHHHHHHHHHHcCCCccCCchhhHHHHHHHHHH-HHHhCCceeeec
Q 039134 229 LSTETHKTCFSFC-SLFLKNQLIRKDELVDLWIGEGLFRGSHNIVVARMQGKCIID-SLIGVCLLEEVQ 295 (339)
Q Consensus 229 L~~~~~k~~~~~l-a~f~~~~~i~~~~li~~w~a~~~~~~~~~~~~~~~~~~~~l~-~L~~~sLi~~~~ 295 (339)
|++ ..+..+..+ ..+.. .++....+.... | .....++..++ .|++++||....
T Consensus 236 l~~-~~~~~L~al~~~~~~-~~~~~~~ia~~l---g---------~~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 236 LDE-IDRKLLSVLIEQFQG-GPVGLKTLAAAL---G---------EDADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred CCH-HHHHHHHHHHHHhCC-CcccHHHHHHHh---C---------CCcchHHHhhhHHHHHcCCcccCC
Confidence 887 666666633 55543 345544433321 1 12235667788 699999997554
No 8
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.21 E-value=8.1e-11 Score=109.03 Aligned_cols=243 Identities=16% Similarity=0.107 Sum_probs=141.0
Q ss_pred ccCccccccchhHHHHHHHHHhhc----CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHH
Q 039134 31 KVDTLSVKKGMESILDEVWECFED----DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGR 106 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 106 (339)
++.....|+||+..++.+...+.. +...+.++|+|++|+|||+||+.+++... ..+ .++..........
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~---~~~---~~~~~~~~~~~~~- 92 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNI---RITSGPALEKPGD- 92 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC---CCe---EEEecccccChHH-
Confidence 344556789999999999888764 23467889999999999999999999983 222 1121111111222
Q ss_pred HHHHHHHhcCCceEEEEecCCCCCC--cccc-------c----CC-----------CCCCceEEEeCCChHHHhhc--CC
Q 039134 107 AEEIFQRLSQRRFALLLDDLRGPIN--LDEA-------G----VP-----------DQNGSKIVFTTIMEDACNTM--GD 160 (339)
Q Consensus 107 ~~~l~~~l~~k~~LlvlDdv~~~~~--l~~l-------~----~~-----------~~~~~~ilvTsR~~~~~~~~--~~ 160 (339)
...+...+ +...+|++|+++.... .+.+ . .. ....+.|..|++...+.... ..
T Consensus 93 l~~~l~~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf 171 (328)
T PRK00080 93 LAAILTNL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRF 171 (328)
T ss_pred HHHHHHhc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhc
Confidence 22222223 3567888999865431 1100 0 00 01234455666654332211 11
Q ss_pred CceEEecCCCCcc--------CccCCChhHHHHHHHHHHHcCCChHHHHHHHHHhccC-----CCCC----CcChhHHHH
Q 039134 161 QIKFKVDYLRRDD--------DVLNFHPDILELAETVADLCRGLPLAHITIGRAMANT-----RNRM----GDLILPRLK 223 (339)
Q Consensus 161 ~~~~~l~~L~~~~--------~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~-----~~~~----~~~~~~~l~ 223 (339)
...+.+.+++.++ .......-..+.+..|++.|+|.|..+..+...+..- .... -......+.
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~ 251 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLG 251 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 3468889999888 1112223345778999999999998776666543321 1111 112233444
Q ss_pred HhhcCCCcchhhHHHh-HhcccCCCCcccHHHHHHHHHHcCCCccCCchhhHHHHHHHHHH-HHHhCCceeeec
Q 039134 224 FSYDHLSTETHKTCFS-FCSLFLKNQLIRKDELVDLWIGEGLFRGSHNIVVARMQGKCIID-SLIGVCLLEEVQ 295 (339)
Q Consensus 224 ~~~~~L~~~~~k~~~~-~la~f~~~~~i~~~~li~~w~a~~~~~~~~~~~~~~~~~~~~l~-~L~~~sLi~~~~ 295 (339)
..+..|++ ..+..+. .+..|..+ ++..+.+.... ......+++.++ .|++.+||+...
T Consensus 252 ~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l------------g~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 252 VDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL------------GEERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred CCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH------------CCCcchHHHHhhHHHHHcCCcccCC
Confidence 55667877 6667775 55556544 56655553322 122235566778 999999998654
No 9
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.20 E-value=2e-11 Score=106.97 Aligned_cols=162 Identities=20% Similarity=0.340 Sum_probs=88.4
Q ss_pred ccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC-----------------
Q 039134 38 KKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN----------------- 100 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~----------------- 100 (339)
|+||++++++|.+++..+ ..+.++|+|+.|+|||+|++.+.+... . ..+ .++|+.....
T Consensus 1 F~gR~~el~~l~~~l~~~-~~~~~~l~G~rg~GKTsLl~~~~~~~~-~-~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-PSQHILLYGPRGSGKTSLLKEFINELK-E-KGY-KVVYIDFLEESNESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh-cCcEEEEEcCCcCCHHHHHHHHHHHhh-h-cCC-cEEEEecccchhhhHHHHHHHHHHHHH
Confidence 699999999999999886 678999999999999999999999872 1 111 2222221100
Q ss_pred -----------------------CCHHHHHHHHHHHhc--CCceEEEEecCCCCC-Ccc---c----c---c--CCCCCC
Q 039134 101 -----------------------KNQQGRAEEIFQRLS--QRRFALLLDDLRGPI-NLD---E----A---G--VPDQNG 142 (339)
Q Consensus 101 -----------------------~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~-~l~---~----l---~--~~~~~~ 142 (339)
.........+.+.+. +++++||+||++... ... . + . .....+
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 111223333334443 345999999996555 111 1 1 0 012344
Q ss_pred ceEEEeCCChHHHhh--------cCCCceEEecCCCCcc------Ccc-CCC--hhHHHHHHHHHHHcCCChHHHHHH
Q 039134 143 SKIVFTTIMEDACNT--------MGDQIKFKVDYLRRDD------DVL-NFH--PDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 143 ~~ilvTsR~~~~~~~--------~~~~~~~~l~~L~~~~------~~~-~~~--~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
..+|++..+...... .+....+.+++|+.++ ..+ ... +...+..+.++..+||+|..|..+
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhcC
Confidence 445555444433222 2334459999999998 111 111 235677799999999999988753
No 10
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.20 E-value=5.4e-10 Score=106.19 Aligned_cols=256 Identities=13% Similarity=0.041 Sum_probs=140.6
Q ss_pred ccccccchhHHHHHHHHHhhc---CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC----------
Q 039134 34 TLSVKKGMESILDEVWECFED---DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN---------- 100 (339)
Q Consensus 34 ~~~~~vGR~~~~~~l~~~l~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~---------- 100 (339)
.++.++||+.++++|...+.. +...+.+.|+|++|+|||++++.+++... .....-.++++.+...
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 456789999999999999854 23456789999999999999999999873 2221223455544311
Q ss_pred -------------CCHHHHHHHHHHHhc--CCceEEEEecCCCCC------Cccccc-CC-C--CCCceEEEeCCChHHH
Q 039134 101 -------------KNQQGRAEEIFQRLS--QRRFALLLDDLRGPI------NLDEAG-VP-D--QNGSKIVFTTIMEDAC 155 (339)
Q Consensus 101 -------------~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~------~l~~l~-~~-~--~~~~~ilvTsR~~~~~ 155 (339)
.+.+.....+.+.+. +++.+||||+++... .+..+. .. . ..+..+|.++......
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 123445555555554 456899999997643 122221 11 1 1133355555543322
Q ss_pred hhc-------CCCceEEecCCCCcc----------CccCCChhHHHHHHHHHHH----cCCChHHHHHHHHHhc----cC
Q 039134 156 NTM-------GDQIKFKVDYLRRDD----------DVLNFHPDILELAETVADL----CRGLPLAHITIGRAMA----NT 210 (339)
Q Consensus 156 ~~~-------~~~~~~~l~~L~~~~----------~~~~~~~~~~~~~~~i~~~----~~G~Plal~~~~~~L~----~~ 210 (339)
... -....+.+.+++.++ ..+....-..+.++.+++. .|..+.++..+-.+.. ..
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 111 112467889998887 1111111123333444443 4557777777654321 11
Q ss_pred CCCCC-cCh--------hHHHHHhhcCCCcchhhHHHhHhcccCC--CCcccHHHHHHHH--HHcCCCccCCchhhHHHH
Q 039134 211 RNRMG-DLI--------LPRLKFSYDHLSTETHKTCFSFCSLFLK--NQLIRKDELVDLW--IGEGLFRGSHNIVVARMQ 277 (339)
Q Consensus 211 ~~~~~-~~~--------~~~l~~~~~~L~~~~~k~~~~~la~f~~--~~~i~~~~li~~w--~a~~~~~~~~~~~~~~~~ 277 (339)
..... +.+ ...+...+..||. ..+..+..++.... ...+....+.... +++.+-.. ......
T Consensus 267 ~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~----~~~~~~ 341 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSEIVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE----PRTHTR 341 (394)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC----cCcHHH
Confidence 11111 111 2233456788998 67776666654321 1235555554322 12111111 112245
Q ss_pred HHHHHHHHHhCCceeeec
Q 039134 278 GKCIIDSLIGVCLLEEVQ 295 (339)
Q Consensus 278 ~~~~l~~L~~~sLi~~~~ 295 (339)
...++..|.+.|||+...
T Consensus 342 ~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 342 FYEYINKLDMLGIINTRY 359 (394)
T ss_pred HHHHHHHHHhcCCeEEEE
Confidence 567999999999998753
No 11
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.15 E-value=2.9e-09 Score=100.15 Aligned_cols=255 Identities=11% Similarity=0.123 Sum_probs=140.9
Q ss_pred cccccchhHHHHHHHHHhhc---CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCc---ceEEEEEecCCCC------
Q 039134 35 LSVKKGMESILDEVWECFED---DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNF---YLVILVKAVDNKN------ 102 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~~~------ 102 (339)
++.++||+.++++|...+.. +...+.+.|+|++|+|||++++.+++.+....... -..+|+.+....+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 45789999999999999875 33557899999999999999999998763211111 1345665442111
Q ss_pred -------------------HHHHHHHHHHHhc--CCceEEEEecCCCCC--C---cccc-cC---C--CCCCceEEEeCC
Q 039134 103 -------------------QQGRAEEIFQRLS--QRRFALLLDDLRGPI--N---LDEA-GV---P--DQNGSKIVFTTI 150 (339)
Q Consensus 103 -------------------~~~~~~~l~~~l~--~k~~LlvlDdv~~~~--~---l~~l-~~---~--~~~~~~ilvTsR 150 (339)
..+....+.+.+. +++.+||||+++... . +..+ .+ . ...+..+|.++.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 2223344444443 457899999997662 1 2222 11 1 123344454444
Q ss_pred ChHHHhhcC-------CCceEEecCCCCcc---------C-ccCC---ChhHHHHHHHHHHHcCCChHHH-HHHHHHh--
Q 039134 151 MEDACNTMG-------DQIKFKVDYLRRDD---------D-VLNF---HPDILELAETVADLCRGLPLAH-ITIGRAM-- 207 (339)
Q Consensus 151 ~~~~~~~~~-------~~~~~~l~~L~~~~---------~-~~~~---~~~~~~~~~~i~~~~~G~Plal-~~~~~~L-- 207 (339)
......... ....+.+.|++.++ . .... .+...+.+..++..+.|.|..+ ..+-.+.
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 332211111 12468899998887 1 1111 1222345556677777887544 3332222
Q ss_pred --ccCCCCCCc-Ch--------hHHHHHhhcCCCcchhhHHHhHhcccC--CCCcccHHHHHHHHHH--cCC-CccCCch
Q 039134 208 --ANTRNRMGD-LI--------LPRLKFSYDHLSTETHKTCFSFCSLFL--KNQLIRKDELVDLWIG--EGL-FRGSHNI 271 (339)
Q Consensus 208 --~~~~~~~~~-~~--------~~~l~~~~~~L~~~~~k~~~~~la~f~--~~~~i~~~~li~~w~a--~~~-~~~~~~~ 271 (339)
..+...... .+ .......+..||. ..+.++..++..- .+..+....+...+.. +.+ ..+
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~---- 328 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDP---- 328 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCC----
Confidence 111111111 11 1233445678888 6666665554321 3344666666653321 111 111
Q ss_pred hhHHHHHHHHHHHHHhCCceeeec
Q 039134 272 VVARMQGKCIIDSLIGVCLLEEVQ 295 (339)
Q Consensus 272 ~~~~~~~~~~l~~L~~~sLi~~~~ 295 (339)
.......+++..|...|||+...
T Consensus 329 -~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 329 -LTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred -CcHHHHHHHHHHHHhcCCeEEEE
Confidence 23467788999999999999864
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.02 E-value=1.5e-08 Score=91.10 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=88.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec-------------------CCCCHHHHHHHHHHHh---
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV-------------------DNKNQQGRAEEIFQRL--- 114 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-------------------~~~~~~~~~~~l~~~l--- 114 (339)
+.+.++|+|++|+|||||++.+++... . ..+ ..+|+... ...+.......+...+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~-~-~~~-~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD-Q-ERV-VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC-C-CCe-EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999999998873 1 111 22333221 1111122223333222
Q ss_pred --cCCceEEEEecCCCCCC--ccccc--CC----CCCCceEEEeCCChHHHhhc----------CCCceEEecCCCCcc-
Q 039134 115 --SQRRFALLLDDLRGPIN--LDEAG--VP----DQNGSKIVFTTIMEDACNTM----------GDQIKFKVDYLRRDD- 173 (339)
Q Consensus 115 --~~k~~LlvlDdv~~~~~--l~~l~--~~----~~~~~~ilvTsR~~~~~~~~----------~~~~~~~l~~L~~~~- 173 (339)
.+++.++|+||++.... ++.+. .. ......+++|...... ... .....+.+.+++.++
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~-~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFR-ETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHH-HHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 56789999999987642 33321 11 1223345566554321 111 113457899999988
Q ss_pred --------CccC---CChhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039134 174 --------DVLN---FHPDILELAETVADLCRGLPLAHITIGRAM 207 (339)
Q Consensus 174 --------~~~~---~~~~~~~~~~~i~~~~~G~Plal~~~~~~L 207 (339)
.... ...-..+..+.|++.|+|.|..|+.++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 1111 123346889999999999999999988876
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.02 E-value=3.5e-09 Score=96.90 Aligned_cols=161 Identities=24% Similarity=0.253 Sum_probs=101.8
Q ss_pred ccCccccccchhHHH---HHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHH
Q 039134 31 KVDTLSVKKGMESIL---DEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRA 107 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~---~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 107 (339)
+|.+...+||.+..+ .-|..++..+ ......+|||+|+||||||+.++.... ..|...--+. +...+....+
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~-~l~SmIl~GPPG~GKTTlA~liA~~~~---~~f~~~sAv~-~gvkdlr~i~ 93 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEAG-HLHSMILWGPPGTGKTTLARLIAGTTN---AAFEALSAVT-SGVKDLREII 93 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhcC-CCceeEEECCCCCCHHHHHHHHHHhhC---CceEEecccc-ccHHHHHHHH
Confidence 345556678888776 3355556666 889999999999999999999999873 4443221110 1223334444
Q ss_pred HHHH-HHhcCCceEEEEecCCCC--CCcccccCC-CCCCceEEE--eCCChHH---HhhcCCCceEEecCCCCcc-----
Q 039134 108 EEIF-QRLSQRRFALLLDDLRGP--INLDEAGVP-DQNGSKIVF--TTIMEDA---CNTMGDQIKFKVDYLRRDD----- 173 (339)
Q Consensus 108 ~~l~-~~l~~k~~LlvlDdv~~~--~~l~~l~~~-~~~~~~ilv--TsR~~~~---~~~~~~~~~~~l~~L~~~~----- 173 (339)
+.-+ ....+++.+|++|.+... .+-+.+ .| ...|..++| ||-++.. ........++.+++|+.++
T Consensus 94 e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l-Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l 172 (436)
T COG2256 94 EEARKNRLLGRRTILFLDEIHRFNKAQQDAL-LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLL 172 (436)
T ss_pred HHHHHHHhcCCceEEEEehhhhcChhhhhhh-hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHH
Confidence 4442 334589999999999644 344444 44 677777776 7777643 1122345789999999998
Q ss_pred -C-------ccC-CCh-hHHHHHHHHHHHcCCCh
Q 039134 174 -D-------VLN-FHP-DILELAETVADLCRGLP 197 (339)
Q Consensus 174 -~-------~~~-~~~-~~~~~~~~i~~~~~G~P 197 (339)
+ .+. ... -.++..+.+++.++|--
T Consensus 173 ~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 173 KRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred HHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 1 111 011 12456667788887754
No 14
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=1.9e-08 Score=98.60 Aligned_cols=173 Identities=16% Similarity=0.147 Sum_probs=106.5
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc-----c------------------C
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT-----R------------------H 87 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----~------------------~ 87 (339)
++.+-..+||-+..++.|.+.+..+.-...++++|+.|+||||+|+.+++.+.-. . +
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 3444456799999999999999987556788999999999999999999877410 0 0
Q ss_pred CcceEEEEEecCCCCHHHHHHHHHHH----hcCCceEEEEecCCCCCC--ccccc----CCCCCCceEEEeCCChHHHh-
Q 039134 88 NFYLVILVKAVDNKNQQGRAEEIFQR----LSQRRFALLLDDLRGPIN--LDEAG----VPDQNGSKIVFTTIMEDACN- 156 (339)
Q Consensus 88 ~f~~~~wv~~~~~~~~~~~~~~l~~~----l~~k~~LlvlDdv~~~~~--l~~l~----~~~~~~~~ilvTsR~~~~~~- 156 (339)
.|..+++++.......++..+.+.+. ..++.-++|||+++.... .+.+. .+..+-..|++|+....+..
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 11223344333334455444433322 245667999999987743 33331 11233344555665544431
Q ss_pred hcCCCceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 157 TMGDQIKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 157 ~~~~~~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
.......+.+.+++.++ .. ........+..+.|++.++|.|.....+
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 12223568899998887 11 1122233556788999999988644433
No 15
>PRK04195 replication factor C large subunit; Provisional
Probab=98.99 E-value=4.7e-08 Score=95.24 Aligned_cols=225 Identities=19% Similarity=0.130 Sum_probs=128.5
Q ss_pred cccCccccccchhHHHHHHHHHhhcC---CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHH
Q 039134 30 DKVDTLSVKKGMESILDEVWECFEDD---FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGR 106 (339)
Q Consensus 30 ~~~~~~~~~vGR~~~~~~l~~~l~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 106 (339)
.+|.+...++|++..++++..|+..- ...+.++|+|++|+||||+|+.+++.. .|. ++-++.+.....+..
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~~i 81 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTADVI 81 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHHHH
Confidence 34555667899999999999998752 236899999999999999999999987 233 233333333233332
Q ss_pred HHHHHHHh-----c-CCceEEEEecCCCCCC------cccccCC-CCCCceEEEeCCChHH--H-hhcCCCceEEecCCC
Q 039134 107 AEEIFQRL-----S-QRRFALLLDDLRGPIN------LDEAGVP-DQNGSKIVFTTIMEDA--C-NTMGDQIKFKVDYLR 170 (339)
Q Consensus 107 ~~~l~~~l-----~-~k~~LlvlDdv~~~~~------l~~l~~~-~~~~~~ilvTsR~~~~--~-~~~~~~~~~~l~~L~ 170 (339)
...+.... . .++-+||+|+++.... +..+... ...++.+|+|+.+... . ........+.+.+++
T Consensus 82 ~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~ 161 (482)
T PRK04195 82 ERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNACLMIEFKRLS 161 (482)
T ss_pred HHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhccceEEEecCCC
Confidence 22222222 2 2678999999976532 2222111 2334556666644321 1 111234668888888
Q ss_pred Ccc-----Cc---cCCChhHHHHHHHHHHHcCCChHHHHHHHHHhccC-C------------CCCCcChhHHHHHhhcCC
Q 039134 171 RDD-----DV---LNFHPDILELAETVADLCRGLPLAHITIGRAMANT-R------------NRMGDLILPRLKFSYDHL 229 (339)
Q Consensus 171 ~~~-----~~---~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~-~------------~~~~~~~~~~l~~~~~~L 229 (339)
..+ .. ........+....|++.++|....+......+... . ......++.++..-+..=
T Consensus 162 ~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~d~~~~if~~l~~i~~~k 241 (482)
T PRK04195 162 TRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRRDREESIFDALDAVFKAR 241 (482)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcCCCCCCHHHHHHHHHCCC
Confidence 877 10 11122336778889999999765554333333322 1 223345666666555421
Q ss_pred CcchhhHHHhHhcccCCCCcccHHHHHHHHHHcCCCccC
Q 039134 230 STETHKTCFSFCSLFLKNQLIRKDELVDLWIGEGLFRGS 268 (339)
Q Consensus 230 ~~~~~k~~~~~la~f~~~~~i~~~~li~~w~a~~~~~~~ 268 (339)
....+...+.. ..++.+ .+-.|+.+.++...
T Consensus 242 ~~~~a~~~~~~-------~~~~~~-~i~~~l~en~~~~~ 272 (482)
T PRK04195 242 NADQALEASYD-------VDEDPD-DLIEWIDENIPKEY 272 (482)
T ss_pred CHHHHHHHHHc-------ccCCHH-HHHHHHHhcccccc
Confidence 11123222221 123333 46679999997754
No 16
>PF05729 NACHT: NACHT domain
Probab=98.92 E-value=8.2e-09 Score=85.43 Aligned_cols=114 Identities=19% Similarity=0.327 Sum_probs=71.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCC----cceEEEEEecCCCCH---HHHHHHHH---------------HH-hc
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHN----FYLVILVKAVDNKNQ---QGRAEEIF---------------QR-LS 115 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~----f~~~~wv~~~~~~~~---~~~~~~l~---------------~~-l~ 115 (339)
+++.|+|.+|+||||+++.++..... ... +...+|+........ ....+.+. .. ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEK 79 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHc
Confidence 47899999999999999999988842 222 345666666511110 01111111 11 14
Q ss_pred CCceEEEEecCCCCCCc-c--------cc---cCC--CCCCceEEEeCCChHH---HhhcCCCceEEecCCCCcc
Q 039134 116 QRRFALLLDDLRGPINL-D--------EA---GVP--DQNGSKIVFTTIMEDA---CNTMGDQIKFKVDYLRRDD 173 (339)
Q Consensus 116 ~k~~LlvlDdv~~~~~l-~--------~l---~~~--~~~~~~ilvTsR~~~~---~~~~~~~~~~~l~~L~~~~ 173 (339)
.++++||+|++++...- . .+ ..+ ...++++++|+|.... .........+.+.+|++++
T Consensus 80 ~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 67899999999765431 1 11 112 3568999999998765 2333334578999998654
No 17
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.91 E-value=3.2e-08 Score=98.24 Aligned_cols=177 Identities=14% Similarity=0.133 Sum_probs=110.3
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc------------------cCCcceE
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT------------------RHNFYLV 92 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------------------~~~f~~~ 92 (339)
++.+-..+||.+..++.|.+++..+.-...++++|+.|+||||+|+.+++.+.-. .+.|..+
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 4444566799999999999999987456788999999999999999998876311 0122234
Q ss_pred EEEEecCCCCHHHHHHHHHHHh----cCCceEEEEecCCCCCC--cccccCC---CCCCceEEEeCCChH-HH-hhcCCC
Q 039134 93 ILVKAVDNKNQQGRAEEIFQRL----SQRRFALLLDDLRGPIN--LDEAGVP---DQNGSKIVFTTIMED-AC-NTMGDQ 161 (339)
Q Consensus 93 ~wv~~~~~~~~~~~~~~l~~~l----~~k~~LlvlDdv~~~~~--l~~l~~~---~~~~~~ilvTsR~~~-~~-~~~~~~ 161 (339)
++++.......++..+.+.... .++.-++|||+++.... ++.+... ...+.++|++|.+.. +. ......
T Consensus 91 iEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC 170 (830)
T PRK07003 91 VEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC 170 (830)
T ss_pred EEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe
Confidence 5554433344444443333221 34566899999987754 3333111 334666666666543 22 222334
Q ss_pred ceEEecCCCCcc------Cc--cCCChhHHHHHHHHHHHcCCCh-HHHHHHHHHh
Q 039134 162 IKFKVDYLRRDD------DV--LNFHPDILELAETVADLCRGLP-LAHITIGRAM 207 (339)
Q Consensus 162 ~~~~l~~L~~~~------~~--~~~~~~~~~~~~~i~~~~~G~P-lal~~~~~~L 207 (339)
..+.+.+++.++ .. ...-....+..+.|++.++|.. .+++++-..+
T Consensus 171 q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 171 LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 678999998888 11 1112234677788999998855 5666644444
No 18
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.89 E-value=1.4e-08 Score=88.98 Aligned_cols=160 Identities=16% Similarity=0.130 Sum_probs=95.5
Q ss_pred chhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhcCCce
Q 039134 40 GMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLSQRRF 119 (339)
Q Consensus 40 GR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~k~~ 119 (339)
+.+..++.+.+++... ....+.|+|++|+|||+||+.+++... ......+++++..-.+ ....+...+.+ .-
T Consensus 21 ~~~~~~~~l~~~~~~~-~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~---~~~~~~~~~~~-~~ 92 (226)
T TIGR03420 21 GNAELLAALRQLAAGK-GDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ---ADPEVLEGLEQ-AD 92 (226)
T ss_pred CcHHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH---hHHHHHhhccc-CC
Confidence 3456777788776554 578999999999999999999998873 2233455555432111 11222233333 34
Q ss_pred EEEEecCCCCCC---c-cccc--CC--CCCCceEEEeCCChHH---------HhhcCCCceEEecCCCCcc-----Cc--
Q 039134 120 ALLLDDLRGPIN---L-DEAG--VP--DQNGSKIVFTTIMEDA---------CNTMGDQIKFKVDYLRRDD-----DV-- 175 (339)
Q Consensus 120 LlvlDdv~~~~~---l-~~l~--~~--~~~~~~ilvTsR~~~~---------~~~~~~~~~~~l~~L~~~~-----~~-- 175 (339)
+||+||++.... | ..+. .. ...+..+|+|++.... ...+.....+++.++++++ ..
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 899999975532 1 1221 11 2334578888875321 1122224578899998866 11
Q ss_pred -cCCChhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039134 176 -LNFHPDILELAETVADLCRGLPLAHITIGRAM 207 (339)
Q Consensus 176 -~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L 207 (339)
...-+-..+....+.+.+.|+|..+..+...+
T Consensus 173 ~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 173 ARRGLQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11122345666778888888888777665443
No 19
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.89 E-value=1.9e-08 Score=86.23 Aligned_cols=172 Identities=18% Similarity=0.177 Sum_probs=95.7
Q ss_pred cccCccccccchhHHHHHHHHHhhc----CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHH
Q 039134 30 DKVDTLSVKKGMESILDEVWECFED----DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQG 105 (339)
Q Consensus 30 ~~~~~~~~~vGR~~~~~~l~~~l~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 105 (339)
-+|.+...|||.+..++.+.-.+.. ++....+.++||+|+||||||.-+++... ..|. +..........+
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~---~~~~---~~sg~~i~k~~d 91 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG---VNFK---ITSGPAIEKAGD 91 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-----EE---EEECCC--SCHH
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC---CCeE---eccchhhhhHHH
Confidence 4466678899999999987766553 23578899999999999999999999984 4442 222222223344
Q ss_pred HHHHHHHHhcCCceEEEEecCCCCCC-cccccCC------------C-----------CCCceEEEeCCChHHHhhcCC-
Q 039134 106 RAEEIFQRLSQRRFALLLDDLRGPIN-LDEAGVP------------D-----------QNGSKIVFTTIMEDACNTMGD- 160 (339)
Q Consensus 106 ~~~~l~~~l~~k~~LlvlDdv~~~~~-l~~l~~~------------~-----------~~~~~ilvTsR~~~~~~~~~~- 160 (339)
+...+. .++ ++-+|++|.+..... .+++..| . .+-+.|=.|||...+......
T Consensus 92 l~~il~-~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdR 169 (233)
T PF05496_consen 92 LAAILT-NLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDR 169 (233)
T ss_dssp HHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTT
T ss_pred HHHHHH-hcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhh
Confidence 444333 333 566888899976532 1111000 1 122334458887554333322
Q ss_pred -CceEEecCCCCcc--------CccCCChhHHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 039134 161 -QIKFKVDYLRRDD--------DVLNFHPDILELAETVADLCRGLPLAHITIGRAMAN 209 (339)
Q Consensus 161 -~~~~~l~~L~~~~--------~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~ 209 (339)
....+++..+.++ .....-+-..+.+..|+++|.|-|.-..-+.+.+++
T Consensus 170 Fgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 170 FGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp SSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred cceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 2345788888888 223344556788999999999999877766666554
No 20
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.87 E-value=1.4e-08 Score=97.02 Aligned_cols=168 Identities=23% Similarity=0.214 Sum_probs=100.8
Q ss_pred ccCccccccchhHHHHH---HHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--CCCCHHH
Q 039134 31 KVDTLSVKKGMESILDE---VWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--DNKNQQG 105 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~---l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~ 105 (339)
+|.+...+||++..+.. +..++..+ ....++|+|++|+||||||+.+++... ..|. .+... .......
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~~-~~~~ilL~GppGtGKTtLA~~ia~~~~---~~~~---~l~a~~~~~~~ir~ 79 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEAG-RLSSMILWGPPGTGKTTLARIIAGATD---APFE---ALSAVTSGVKDLRE 79 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHcC-CCceEEEECCCCCCHHHHHHHHHHHhC---CCEE---EEecccccHHHHHH
Confidence 34455678999998776 88888776 667889999999999999999998873 3332 11111 1111222
Q ss_pred HHHHHHHHh-cCCceEEEEecCCCCCC--cccccCCCCCCceEEE--eCCChHH---HhhcCCCceEEecCCCCcc----
Q 039134 106 RAEEIFQRL-SQRRFALLLDDLRGPIN--LDEAGVPDQNGSKIVF--TTIMEDA---CNTMGDQIKFKVDYLRRDD---- 173 (339)
Q Consensus 106 ~~~~l~~~l-~~k~~LlvlDdv~~~~~--l~~l~~~~~~~~~ilv--TsR~~~~---~~~~~~~~~~~l~~L~~~~---- 173 (339)
..+...... .+++.+|++|+++.... .+.+......+..+++ ||.+... .........+.+.+++.++
T Consensus 80 ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~l 159 (413)
T PRK13342 80 VIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQL 159 (413)
T ss_pred HHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHH
Confidence 233222222 45788999999986542 3333111223444444 4444321 1112233678999999888
Q ss_pred --Ccc---C-CC-hhHHHHHHHHHHHcCCChHHHHHHHH
Q 039134 174 --DVL---N-FH-PDILELAETVADLCRGLPLAHITIGR 205 (339)
Q Consensus 174 --~~~---~-~~-~~~~~~~~~i~~~~~G~Plal~~~~~ 205 (339)
... . .. ....+..+.+++.|+|.+..+..+..
T Consensus 160 L~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 160 LKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 110 1 11 33466778899999999976654443
No 21
>PRK06893 DNA replication initiation factor; Validated
Probab=98.83 E-value=4.4e-08 Score=86.00 Aligned_cols=144 Identities=14% Similarity=0.126 Sum_probs=85.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhcCCceEEEEecCCCCC---Ccc
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLSQRRFALLLDDLRGPI---NLD 133 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~---~l~ 133 (339)
..+.+.|+|++|+|||+|++.+++... .....+.|++.... +.....+.+.+. +.-+|++||++... .|.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~---~~~~~~~~~~~~-~~dlLilDDi~~~~~~~~~~ 110 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKS---QYFSPAVLENLE-QQDLVCLDDLQAVIGNEEWE 110 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHh---hhhhHHHHhhcc-cCCEEEEeChhhhcCChHHH
Confidence 346789999999999999999999874 22334567665311 111122333333 34589999998642 233
Q ss_pred cccC---C--CCCCceE-EEeCCC---------hHHHhhcCCCceEEecCCCCcc-----C--cc-CCChhHHHHHHHHH
Q 039134 134 EAGV---P--DQNGSKI-VFTTIM---------EDACNTMGDQIKFKVDYLRRDD-----D--VL-NFHPDILELAETVA 190 (339)
Q Consensus 134 ~l~~---~--~~~~~~i-lvTsR~---------~~~~~~~~~~~~~~l~~L~~~~-----~--~~-~~~~~~~~~~~~i~ 190 (339)
...+ . ...+..+ |+|+.. +.+...+.....++++++++++ + .. ..-.-..+...-|+
T Consensus 111 ~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~ 190 (229)
T PRK06893 111 LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLL 190 (229)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2211 1 2334545 455554 2334444455688899998777 1 11 12223456667788
Q ss_pred HHcCCChHHHHHHHHHh
Q 039134 191 DLCRGLPLAHITIGRAM 207 (339)
Q Consensus 191 ~~~~G~Plal~~~~~~L 207 (339)
+.+.|....+..+...|
T Consensus 191 ~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 191 KRLDRDMHTLFDALDLL 207 (229)
T ss_pred HhccCCHHHHHHHHHHH
Confidence 88887776666554444
No 22
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.7e-07 Score=92.17 Aligned_cols=171 Identities=14% Similarity=0.114 Sum_probs=105.2
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc------------------cCCcceE
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT------------------RHNFYLV 92 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------------------~~~f~~~ 92 (339)
++.+-..+||.+...+.|..++..+.-...++++|+.|+||||+|+.+++.+.-. .+.+..+
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 3444556799999999999999987456788999999999999999998876310 0112223
Q ss_pred EEEEecCCCCHHHHHHHHHHH----hcCCceEEEEecCCCCCC--cccccCC---CCCCceEEEeCCCh-HHH-hhcCCC
Q 039134 93 ILVKAVDNKNQQGRAEEIFQR----LSQRRFALLLDDLRGPIN--LDEAGVP---DQNGSKIVFTTIME-DAC-NTMGDQ 161 (339)
Q Consensus 93 ~wv~~~~~~~~~~~~~~l~~~----l~~k~~LlvlDdv~~~~~--l~~l~~~---~~~~~~ilvTsR~~-~~~-~~~~~~ 161 (339)
+.+........++..+.+.+. ..++.-++|+|+++.... ...+... ...++.+|++|.+. .+. ......
T Consensus 90 iEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRC 169 (702)
T PRK14960 90 IEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRC 169 (702)
T ss_pred EEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhh
Confidence 333333333444433322211 235677999999987642 3333111 23445566555443 221 222344
Q ss_pred ceEEecCCCCcc------C--ccCCChhHHHHHHHHHHHcCCChHHHH
Q 039134 162 IKFKVDYLRRDD------D--VLNFHPDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 162 ~~~~l~~L~~~~------~--~~~~~~~~~~~~~~i~~~~~G~Plal~ 201 (339)
..+++.+++.++ . ....-....+....|++.++|.+..+.
T Consensus 170 q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 170 LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 679999999888 1 112223446677889999999775443
No 23
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.77 E-value=7.5e-08 Score=87.06 Aligned_cols=159 Identities=19% Similarity=0.204 Sum_probs=102.1
Q ss_pred cCccccccchhHHHHH---HHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec----CCCCHH
Q 039134 32 VDTLSVKKGMESILDE---VWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV----DNKNQQ 104 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~---l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~----~~~~~~ 104 (339)
+.+...+||.+..+.+ |...+..+ +.+.+.+||++|+||||||+.++.... ... +.||..+ ...+..
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq~-~ipSmIlWGppG~GKTtlArlia~tsk-~~S----yrfvelSAt~a~t~dvR 207 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQN-RIPSMILWGPPGTGKTTLARLIASTSK-KHS----YRFVELSATNAKTNDVR 207 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHcC-CCCceEEecCCCCchHHHHHHHHhhcC-CCc----eEEEEEeccccchHHHH
Confidence 3344456888776643 45555556 899999999999999999999998862 221 5667666 223344
Q ss_pred HHHHHHHHH--hcCCceEEEEecCC--CCCCcccccCC-CCCCceEEE--eCCChHH---HhhcCCCceEEecCCCCcc-
Q 039134 105 GRAEEIFQR--LSQRRFALLLDDLR--GPINLDEAGVP-DQNGSKIVF--TTIMEDA---CNTMGDQIKFKVDYLRRDD- 173 (339)
Q Consensus 105 ~~~~~l~~~--l~~k~~LlvlDdv~--~~~~l~~l~~~-~~~~~~ilv--TsR~~~~---~~~~~~~~~~~l~~L~~~~- 173 (339)
+.++.-++. +.+++.+|++|.+. +..|-+.+ +| ...|..++| ||.++.. ......-.++.|++|+.++
T Consensus 208 ~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~f-LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 208 DIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTF-LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred HHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcc-cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 444444443 45789999999995 44455555 45 666777666 7777643 1222345678889998887
Q ss_pred --------C----c-----cCCC---hhHHHHHHHHHHHcCCCh
Q 039134 174 --------D----V-----LNFH---PDILELAETVADLCRGLP 197 (339)
Q Consensus 174 --------~----~-----~~~~---~~~~~~~~~i~~~~~G~P 197 (339)
. . ..+. .....+.+-++..|.|-.
T Consensus 287 ~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 287 VTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 0 0 1111 123566777888888865
No 24
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.77 E-value=2e-07 Score=85.87 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=98.3
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEe--cCCCCHHHHHHH
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKA--VDNKNQQGRAEE 109 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 109 (339)
|.+-..++|++..++.+..++..+ ..+.+.|+|++|+|||++|+.+++... ...+.. .++.. +.....+.....
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~-~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~-~~i~~~~~~~~~~~~~~~~ 88 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK-NMPHLLFAGPPGTGKTTAALALARELY--GEDWRE-NFLELNASDERGIDVIRNK 88 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHc--CCcccc-ceEEeccccccchHHHHHH
Confidence 344456899999999999999876 455689999999999999999999873 122221 12222 222222222233
Q ss_pred HHHHhc------CCceEEEEecCCCCCC-----cccccCCCCCCceEEEeCCCh-HHHh-hcCCCceEEecCCCCcc---
Q 039134 110 IFQRLS------QRRFALLLDDLRGPIN-----LDEAGVPDQNGSKIVFTTIME-DACN-TMGDQIKFKVDYLRRDD--- 173 (339)
Q Consensus 110 l~~~l~------~k~~LlvlDdv~~~~~-----l~~l~~~~~~~~~ilvTsR~~-~~~~-~~~~~~~~~l~~L~~~~--- 173 (339)
+.+... ..+-++++|+++.... +..+.......+.+|+++... .... .......+++.+++.++
T Consensus 89 i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~ 168 (319)
T PRK00440 89 IKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAE 168 (319)
T ss_pred HHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHH
Confidence 333221 2356899999875532 222211123345666655432 1111 11223468889998887
Q ss_pred --Cc---cCCChhHHHHHHHHHHHcCCChHHHHH
Q 039134 174 --DV---LNFHPDILELAETVADLCRGLPLAHIT 202 (339)
Q Consensus 174 --~~---~~~~~~~~~~~~~i~~~~~G~Plal~~ 202 (339)
.. .....-..+.+..+++.++|.+.-+..
T Consensus 169 ~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 169 RLRYIAENEGIEITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 10 111223466788899999998866443
No 25
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=1.9e-07 Score=87.72 Aligned_cols=171 Identities=15% Similarity=0.126 Sum_probs=102.9
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc------------------CCcceE
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR------------------HNFYLV 92 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~ 92 (339)
+|.+-..++|.+..++.+...+..+.-...++++|++|+||||+|+.+++...-.. ..+...
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 34445567999999999999998874557789999999999999999998763000 011122
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccccCC---CCCCceEEEeCCC-hHHHhh-cCC
Q 039134 93 ILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEAGVP---DQNGSKIVFTTIM-EDACNT-MGD 160 (339)
Q Consensus 93 ~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l~~~---~~~~~~ilvTsR~-~~~~~~-~~~ 160 (339)
.++........++ ...+.+.+ .++.-++|+|+++.... ++.+... ....+.+|++|.+ ..+... .+.
T Consensus 91 ~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR 169 (363)
T PRK14961 91 IEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR 169 (363)
T ss_pred EEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh
Confidence 2332222233333 23333333 24556999999987653 3333111 2334555555543 333221 223
Q ss_pred CceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChHHHHH
Q 039134 161 QIKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPLAHIT 202 (339)
Q Consensus 161 ~~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Plal~~ 202 (339)
...+++.+++.++ .. .....-.++.+..+++.++|.|..+..
T Consensus 170 c~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 170 CLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4678999999888 11 112223456778899999998864433
No 26
>PF13173 AAA_14: AAA domain
Probab=98.76 E-value=1.9e-08 Score=80.05 Aligned_cols=112 Identities=20% Similarity=0.246 Sum_probs=75.3
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHH----HHHHHHHHHhcCCceEEEEecCCCCCCcc
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQ----GRAEEIFQRLSQRRFALLLDDLRGPINLD 133 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~----~~~~~l~~~l~~k~~LlvlDdv~~~~~l~ 133 (339)
.++++|.|+.|+|||||+++++++.. ....+++++........ +..+.+.+....++.+++||++.....|.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~ 77 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWE 77 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHH
Confidence 47899999999999999999998872 33456677655322211 12344444444578899999998888776
Q ss_pred cccCC---CCCCceEEEeCCChHHHhh------cCCCceEEecCCCCcc
Q 039134 134 EAGVP---DQNGSKIVFTTIMEDACNT------MGDQIKFKVDYLRRDD 173 (339)
Q Consensus 134 ~l~~~---~~~~~~ilvTsR~~~~~~~------~~~~~~~~l~~L~~~~ 173 (339)
..... ...+.++++|+.+...... .+....+++.||+-.|
T Consensus 78 ~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 78 DALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 66222 3356899999988655422 1223568888887543
No 27
>PLN03025 replication factor C subunit; Provisional
Probab=98.76 E-value=7.1e-08 Score=89.02 Aligned_cols=169 Identities=16% Similarity=0.125 Sum_probs=99.4
Q ss_pred cccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcc-eEEEEEecCCCCHHHHHH
Q 039134 30 DKVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFY-LVILVKAVDNKNQQGRAE 108 (339)
Q Consensus 30 ~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~ 108 (339)
.+|.+...++|.+..++.|..++..+ ..+.+.++|++|+||||+|..+++... ...|. .++-+..+.....+....
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~vr~ 83 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARDG-NMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVVRN 83 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHHHH
Confidence 34555667899999999999888776 556688999999999999999999873 12232 222222222223333333
Q ss_pred HHHHHh-------cCCceEEEEecCCCCCC-----cccccCCCCCCceEEEeCCCh-HHHhh-cCCCceEEecCCCCcc-
Q 039134 109 EIFQRL-------SQRRFALLLDDLRGPIN-----LDEAGVPDQNGSKIVFTTIME-DACNT-MGDQIKFKVDYLRRDD- 173 (339)
Q Consensus 109 ~l~~~l-------~~k~~LlvlDdv~~~~~-----l~~l~~~~~~~~~ilvTsR~~-~~~~~-~~~~~~~~l~~L~~~~- 173 (339)
.+.... .++.-++|+|+++.... +..........+++++++... .+... ......+++.++++++
T Consensus 84 ~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l 163 (319)
T PLN03025 84 KIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEI 163 (319)
T ss_pred HHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHH
Confidence 333221 13567999999986643 211111123445566655432 22111 1123568899998877
Q ss_pred ----Cc---cCCChhHHHHHHHHHHHcCCChHHHH
Q 039134 174 ----DV---LNFHPDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 174 ----~~---~~~~~~~~~~~~~i~~~~~G~Plal~ 201 (339)
.. .....-..+....+++.++|....+.
T Consensus 164 ~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 164 LGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 10 11222235677888999998764443
No 28
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=1e-07 Score=92.63 Aligned_cols=169 Identities=16% Similarity=0.105 Sum_probs=102.3
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcce------------------E
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYL------------------V 92 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~------------------~ 92 (339)
+|.+-..++|.+..++.|..++..+.-...++++|++|+||||+|+.+++.+. -.+.+.. +
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc~~i~~~~h~dv 87 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESCLAVRRGAHPDV 87 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhhHHHhcCCCCce
Confidence 34445567999999999999998874456779999999999999999998873 1111111 2
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccccCC---CCCCceEE-EeCCChHHHhh-cCC
Q 039134 93 ILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEAGVP---DQNGSKIV-FTTIMEDACNT-MGD 160 (339)
Q Consensus 93 ~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l~~~---~~~~~~il-vTsR~~~~~~~-~~~ 160 (339)
.++........+.. ..+...+ .+++-++|+|+++.... ++.+... ....+.+| +|+....+... ...
T Consensus 88 ~el~~~~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 88 LEIDAASNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred EEecccccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 33332222233332 2333333 34667999999976542 3333111 22334444 44443333221 123
Q ss_pred CceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChHHHH
Q 039134 161 QIKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 161 ~~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Plal~ 201 (339)
...+++.+++.++ .. ........+.+..|++.++|.+.-+.
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4679999999888 11 11222356778899999999886553
No 29
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.72 E-value=1.5e-07 Score=82.99 Aligned_cols=163 Identities=12% Similarity=0.054 Sum_probs=92.3
Q ss_pred cccchhH-HHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhc
Q 039134 37 VKKGMES-ILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLS 115 (339)
Q Consensus 37 ~~vGR~~-~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 115 (339)
.++|-.. .+..+.++.... ..+.+.|+|++|+|||+|++.+++... ..-..+.++...... .....+.+.+.
T Consensus 24 f~~~~n~~a~~~l~~~~~~~-~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~---~~~~~~~~~~~ 96 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQE-HSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRA---WFVPEVLEGME 96 (235)
T ss_pred cccCccHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHh---hhhHHHHHHhh
Confidence 3356333 344444444443 457899999999999999999999874 222345666554211 11122233332
Q ss_pred CCceEEEEecCCCCC---Cccccc----CC-CCCC-ceEEEeCCChH---------HHhhcCCCceEEecCCCCcc----
Q 039134 116 QRRFALLLDDLRGPI---NLDEAG----VP-DQNG-SKIVFTTIMED---------ACNTMGDQIKFKVDYLRRDD---- 173 (339)
Q Consensus 116 ~k~~LlvlDdv~~~~---~l~~l~----~~-~~~~-~~ilvTsR~~~---------~~~~~~~~~~~~l~~L~~~~---- 173 (339)
. --+|++||++... .|+... .. ...+ .++|+||+... +...+....++++.++++++
T Consensus 97 ~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 97 Q-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQA 175 (235)
T ss_pred h-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHH
Confidence 2 2478999996542 233221 11 2233 47888888642 22334445789999998777
Q ss_pred --C-cc-CCChhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039134 174 --D-VL-NFHPDILELAETVADLCRGLPLAHITIGRAM 207 (339)
Q Consensus 174 --~-~~-~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L 207 (339)
+ .. ..-.-.++...-|++.+.|....+..+...|
T Consensus 176 l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 176 LQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 1 10 1122335666777777777666555444433
No 30
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.72 E-value=5.7e-08 Score=78.10 Aligned_cols=111 Identities=21% Similarity=0.181 Sum_probs=71.2
Q ss_pred cchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHH---------
Q 039134 39 KGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEE--------- 109 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~--------- 109 (339)
+||+..+..+...+... ..+.+.|+|++|+|||++++.+++... ..-..++++..............
T Consensus 1 ~~~~~~~~~i~~~~~~~-~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (151)
T cd00009 1 VGQEEAIEALREALELP-PPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHFLVRLL 76 (151)
T ss_pred CchHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhhhHhHH
Confidence 48899999999998875 567899999999999999999999873 22234556655422221111111
Q ss_pred HHHHhcCCceEEEEecCCCCC-----CcccccCC--C----CCCceEEEeCCChH
Q 039134 110 IFQRLSQRRFALLLDDLRGPI-----NLDEAGVP--D----QNGSKIVFTTIMED 153 (339)
Q Consensus 110 l~~~l~~k~~LlvlDdv~~~~-----~l~~l~~~--~----~~~~~ilvTsR~~~ 153 (339)
.......++.++++||++... .+...... . ..+..+|+|+....
T Consensus 77 ~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 77 FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 112234567899999998541 12221111 1 35778888887643
No 31
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=1.8e-07 Score=94.62 Aligned_cols=172 Identities=17% Similarity=0.190 Sum_probs=104.4
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccC------------------CcceE
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH------------------NFYLV 92 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~ 92 (339)
++.+-..+||.+..++.|.+++..+.-...++++|+.|+||||+|+.+++.+.-... .|..+
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 344455689999999999999988744566799999999999999999988741100 01112
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccccCC---CCCCce-EEEeCCChHHHhh-cCC
Q 039134 93 ILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEAGVP---DQNGSK-IVFTTIMEDACNT-MGD 160 (339)
Q Consensus 93 ~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l~~~---~~~~~~-ilvTsR~~~~~~~-~~~ 160 (339)
+++........+.. +.+...+ .++.-++|||+++.... .+.+... ....++ |++||....+... ...
T Consensus 91 iEidAas~~kVDdI-ReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSR 169 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 (944)
T ss_pred EEeccccccCHHHH-HHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHh
Confidence 33322212233332 2222222 46678999999976642 3333111 223444 4445554444321 223
Q ss_pred CceEEecCCCCcc-C----c---cCCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 161 QIKFKVDYLRRDD-D----V---LNFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 161 ~~~~~l~~L~~~~-~----~---~~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
...+++.+++.++ . . ........+.+..|++.++|.|..+..+
T Consensus 170 Cq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 170 CLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred heEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4679999999888 1 0 0122334667888999999988644433
No 32
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.71 E-value=2.8e-07 Score=85.66 Aligned_cols=171 Identities=11% Similarity=0.061 Sum_probs=98.7
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcc-eEEEEEecCC----------
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFY-LVILVKAVDN---------- 100 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~---------- 100 (339)
|.+-..++|++..++.+..++..+ ..+.++++|++|+|||++|+.+++... ...+. ..+.++....
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP-NLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhhcchhhhhc
Confidence 444466799999999999999877 556789999999999999999998873 11211 2334333210
Q ss_pred -CC--------------HHHHHHHHHHHh------cCCceEEEEecCCCCCC-----cccccCCCCCCceEEEeCCCh-H
Q 039134 101 -KN--------------QQGRAEEIFQRL------SQRRFALLLDDLRGPIN-----LDEAGVPDQNGSKIVFTTIME-D 153 (339)
Q Consensus 101 -~~--------------~~~~~~~l~~~l------~~k~~LlvlDdv~~~~~-----l~~l~~~~~~~~~ilvTsR~~-~ 153 (339)
.. .......+.+.. .+.+-++|+||++.... +..+.......+.+|+|+... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 00 011111111111 13445899999976532 111111123346666666443 2
Q ss_pred HHhh-cCCCceEEecCCCCcc------Cc--cCCChhHHHHHHHHHHHcCCChHHHHHHHH
Q 039134 154 ACNT-MGDQIKFKVDYLRRDD------DV--LNFHPDILELAETVADLCRGLPLAHITIGR 205 (339)
Q Consensus 154 ~~~~-~~~~~~~~l~~L~~~~------~~--~~~~~~~~~~~~~i~~~~~G~Plal~~~~~ 205 (339)
.... ......+.+.+++.++ .. .....-..+.++.+++.++|.+-.+.....
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2111 1223568888888777 10 111123467788889999887766544333
No 33
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=3.9e-07 Score=90.38 Aligned_cols=174 Identities=11% Similarity=0.111 Sum_probs=102.8
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc------------------CCcceE
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR------------------HNFYLV 92 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~ 92 (339)
++.+-..+||.+..++.|..++..+.-...++++|+.|+||||+|+.+++.+.-.. +.|..+
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 34445567999999999999999874467899999999999999999988752100 112122
Q ss_pred EEEEecCCCCHHHHHHHHHHH----hcCCceEEEEecCCCCCC--cccc---cCCCCCCceEEEeCCC-hHHH-hhcCCC
Q 039134 93 ILVKAVDNKNQQGRAEEIFQR----LSQRRFALLLDDLRGPIN--LDEA---GVPDQNGSKIVFTTIM-EDAC-NTMGDQ 161 (339)
Q Consensus 93 ~wv~~~~~~~~~~~~~~l~~~----l~~k~~LlvlDdv~~~~~--l~~l---~~~~~~~~~ilvTsR~-~~~~-~~~~~~ 161 (339)
+.+........+...+.+... ..+++-++|||+++.... ...+ .......+.+|++|.+ ..+. ...+..
T Consensus 91 lEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC 170 (709)
T PRK08691 91 LEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRC 170 (709)
T ss_pred EEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHH
Confidence 333333333444333332211 235667999999976643 2222 1112234555555443 3221 111223
Q ss_pred ceEEecCCCCcc-----C---ccCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 039134 162 IKFKVDYLRRDD-----D---VLNFHPDILELAETVADLCRGLPLAHITIG 204 (339)
Q Consensus 162 ~~~~l~~L~~~~-----~---~~~~~~~~~~~~~~i~~~~~G~Plal~~~~ 204 (339)
..+.+.+++.++ . .........+.+..|++.++|.+.-+..+.
T Consensus 171 ~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 171 LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 457788888877 1 011222345678889999999885554433
No 34
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=5.7e-07 Score=87.87 Aligned_cols=174 Identities=16% Similarity=0.126 Sum_probs=104.8
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc------------------cCCcceEE
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT------------------RHNFYLVI 93 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------------------~~~f~~~~ 93 (339)
|.+-..++|.+..++.|...+..+.-...++++|+.|+||||+|+.+++.+.-. ...|...+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 334456799999999999999887455778999999999999999999876310 01222334
Q ss_pred EEEecCCCCHHHH---HHHHHH-HhcCCceEEEEecCCCCCC--ccccc----CCCCCCceEEEeCCChHHH-hhcCCCc
Q 039134 94 LVKAVDNKNQQGR---AEEIFQ-RLSQRRFALLLDDLRGPIN--LDEAG----VPDQNGSKIVFTTIMEDAC-NTMGDQI 162 (339)
Q Consensus 94 wv~~~~~~~~~~~---~~~l~~-~l~~k~~LlvlDdv~~~~~--l~~l~----~~~~~~~~ilvTsR~~~~~-~~~~~~~ 162 (339)
++........++. .+.+.. ...+++-++|+|+++.... .+.+. .+...-..|++||....+. .......
T Consensus 92 eidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~ 171 (546)
T PRK14957 92 EIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCI 171 (546)
T ss_pred EeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhee
Confidence 4433222333332 222211 1235677999999976643 33331 1123333455666544333 2223357
Q ss_pred eEEecCCCCcc------Cc--cCCChhHHHHHHHHHHHcCCChH-HHHHHHH
Q 039134 163 KFKVDYLRRDD------DV--LNFHPDILELAETVADLCRGLPL-AHITIGR 205 (339)
Q Consensus 163 ~~~l~~L~~~~------~~--~~~~~~~~~~~~~i~~~~~G~Pl-al~~~~~ 205 (339)
.+++.+++.++ .. ...-.........+++.++|.+. ++..+-.
T Consensus 172 ~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 172 QLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred eEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 79999999888 10 11223346667889999999664 5555433
No 35
>PRK08727 hypothetical protein; Validated
Probab=98.63 E-value=7e-07 Score=78.62 Aligned_cols=154 Identities=13% Similarity=0.071 Sum_probs=85.3
Q ss_pred cchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhcCCc
Q 039134 39 KGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLSQRR 118 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~k~ 118 (339)
+|=...+..+.....+. ....+.|+|++|+|||+|++.+++... .....++|++... .........+.+. +.
T Consensus 23 ~~~~n~~~~~~~~~~~~-~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~---~~~~~~~~~~~l~-~~ 94 (233)
T PRK08727 23 AAPDGLLAQLQALAAGQ-SSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA---AAGRLRDALEALE-GR 94 (233)
T ss_pred CCcHHHHHHHHHHHhcc-CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH---hhhhHHHHHHHHh-cC
Confidence 44444455444444333 446799999999999999999998874 2223455665332 1111112222332 44
Q ss_pred eEEEEecCCCCC---CcccccCC-----CCCCceEEEeCCChHH---------HhhcCCCceEEecCCCCcc-----C--
Q 039134 119 FALLLDDLRGPI---NLDEAGVP-----DQNGSKIVFTTIMEDA---------CNTMGDQIKFKVDYLRRDD-----D-- 174 (339)
Q Consensus 119 ~LlvlDdv~~~~---~l~~l~~~-----~~~~~~ilvTsR~~~~---------~~~~~~~~~~~l~~L~~~~-----~-- 174 (339)
-+||+||+.... .+....+. ...+..+|+|++.... ...+.....+++.+++.++ +
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999996443 22222111 3346679998886321 2222334578888888766 1
Q ss_pred cc-CCChhHHHHHHHHHHHcCCChHHH
Q 039134 175 VL-NFHPDILELAETVADLCRGLPLAH 200 (339)
Q Consensus 175 ~~-~~~~~~~~~~~~i~~~~~G~Plal 200 (339)
.. ....-..+....|++.+.|-...+
T Consensus 175 a~~~~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 00 112233455566666666554443
No 36
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=7.2e-07 Score=85.99 Aligned_cols=170 Identities=17% Similarity=0.121 Sum_probs=103.9
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc------------------cCCcceE
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT------------------RHNFYLV 92 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------------------~~~f~~~ 92 (339)
+|.+-..+||.+..++.|.+.+..+.-...++++|+.|+||||+|+.++....-. ...+..+
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3444556799999999999999887445689999999999999999998754100 0112234
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc---cCCCCCCceEE-EeCCChHHHh-hcCC
Q 039134 93 ILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA---GVPDQNGSKIV-FTTIMEDACN-TMGD 160 (339)
Q Consensus 93 ~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l---~~~~~~~~~il-vTsR~~~~~~-~~~~ 160 (339)
+.++.......++.... .+.. .++.-++|+|+++.... .+.+ .......+.+| +|+....+.. ....
T Consensus 88 ~eidaas~~~vddIR~I-ie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SR 166 (491)
T PRK14964 88 IEIDAASNTSVDDIKVI-LENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR 166 (491)
T ss_pred EEEecccCCCHHHHHHH-HHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHh
Confidence 45554444444544333 2222 35667899999976643 2333 11122344444 4554444422 2233
Q ss_pred CceEEecCCCCcc------C--ccCCChhHHHHHHHHHHHcCCChHHHH
Q 039134 161 QIKFKVDYLRRDD------D--VLNFHPDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 161 ~~~~~l~~L~~~~------~--~~~~~~~~~~~~~~i~~~~~G~Plal~ 201 (339)
...+++.+++.++ . ......-..+.+..|++.++|.+..+.
T Consensus 167 c~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 167 CQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred heeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4678899998887 1 112223346677889999999876443
No 37
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=4.6e-07 Score=89.92 Aligned_cols=171 Identities=15% Similarity=0.159 Sum_probs=104.5
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc------------------CCcceEE
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR------------------HNFYLVI 93 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~ 93 (339)
+.+-..+||.+..++.|...+..+.-...++++|+.|+||||+|+.+++.+.-.. +.|...+
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~i 91 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLI 91 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCce
Confidence 4445567999999999999999874456689999999999999999988874110 0111223
Q ss_pred EEEecCCCCHHHHHHHHHHH-----hcCCceEEEEecCCCCCC--cccc----cCCCCCCceEEEeCCChHHH-hhcCCC
Q 039134 94 LVKAVDNKNQQGRAEEIFQR-----LSQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVFTTIMEDAC-NTMGDQ 161 (339)
Q Consensus 94 wv~~~~~~~~~~~~~~l~~~-----l~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilvTsR~~~~~-~~~~~~ 161 (339)
.+........++..+ +.+. ..++.-++|||+++.... .+.+ -.|..+-..|++||....+. ......
T Consensus 92 eidaas~~~VddiR~-li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC 170 (647)
T PRK07994 92 EIDAASRTKVEDTRE-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (647)
T ss_pred eecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhh
Confidence 333222233443332 2222 245677999999986643 3333 11133334455566554443 222334
Q ss_pred ceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 162 IKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 162 ~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
..+.+.+++.++ .. .............|++.++|.+.....+
T Consensus 171 ~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 679999999888 11 1122334566788999999977644433
No 38
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=6.5e-07 Score=86.46 Aligned_cols=176 Identities=15% Similarity=0.115 Sum_probs=103.2
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccC------------------CcceE
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH------------------NFYLV 92 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~ 92 (339)
+|.+-..+||.+.....|...+..+.-...++++|++|+||||+|+.+++....... .+..+
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 445556789999999999988888744467899999999999999999887631100 01122
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccccCC---CCCCceEE-EeCCChHHHhh-cCC
Q 039134 93 ILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEAGVP---DQNGSKIV-FTTIMEDACNT-MGD 160 (339)
Q Consensus 93 ~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l~~~---~~~~~~il-vTsR~~~~~~~-~~~ 160 (339)
..+........+... .+.+.. .+++-++|+|+++.... .+.+... ....+.+| .|+....+... ...
T Consensus 89 ~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR 167 (472)
T PRK14962 89 IELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 (472)
T ss_pred EEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC
Confidence 333332223333322 333332 24567999999975532 2333111 22234333 45533333221 223
Q ss_pred CceEEecCCCCcc------Cc--cCCChhHHHHHHHHHHHcCC-ChHHHHHHHHHh
Q 039134 161 QIKFKVDYLRRDD------DV--LNFHPDILELAETVADLCRG-LPLAHITIGRAM 207 (339)
Q Consensus 161 ~~~~~l~~L~~~~------~~--~~~~~~~~~~~~~i~~~~~G-~Plal~~~~~~L 207 (339)
...+.+.+++.++ .. .....-..+....|++.++| ++.++..+-...
T Consensus 168 ~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 168 CQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred cEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4678899999888 11 11223345677788887865 567777765543
No 39
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=9.3e-07 Score=85.83 Aligned_cols=170 Identities=14% Similarity=0.096 Sum_probs=102.1
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccC-----Cc-----------------
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH-----NF----------------- 89 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-----~f----------------- 89 (339)
|.+-..++|-+..+..|...+..+.-...++++|+.|+||||+|+.+++.+.-... .+
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h 96 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNH 96 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCC
Confidence 33344569999999999998888745579999999999999999999988731100 00
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHH----hcCCceEEEEecCCCCCC--cccccCC---CCCCceE-EEeCCChHHHhhc-
Q 039134 90 YLVILVKAVDNKNQQGRAEEIFQR----LSQRRFALLLDDLRGPIN--LDEAGVP---DQNGSKI-VFTTIMEDACNTM- 158 (339)
Q Consensus 90 ~~~~wv~~~~~~~~~~~~~~l~~~----l~~k~~LlvlDdv~~~~~--l~~l~~~---~~~~~~i-lvTsR~~~~~~~~- 158 (339)
..+..+........++....+... +.+++-++|+|+++.... ++.+... ....+.+ ++|++...+....
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHH
Confidence 112222222233344333322221 235677899999987643 3333211 2334444 4565554443222
Q ss_pred CCCceEEecCCCCcc-----C-c--cCCChhHHHHHHHHHHHcCCChHHHH
Q 039134 159 GDQIKFKVDYLRRDD-----D-V--LNFHPDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 159 ~~~~~~~l~~L~~~~-----~-~--~~~~~~~~~~~~~i~~~~~G~Plal~ 201 (339)
.....+++.+++.++ . . ........+....|++.++|.+..+.
T Consensus 177 SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 177 SRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred hcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 234568899999888 1 1 11222345677889999999775443
No 40
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=7e-07 Score=91.35 Aligned_cols=169 Identities=14% Similarity=0.098 Sum_probs=103.7
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc---------------------CCc
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR---------------------HNF 89 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---------------------~~f 89 (339)
++.+-..+||.+..++.|..++..+.-...++++|+.|+||||+|+.+++.+.-.. .++
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 34444567999999999999999874456789999999999999999988873100 112
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHH-----hcCCceEEEEecCCCCCC--ccc---ccC-CCCCCceEEEeCCChHHHhh-
Q 039134 90 YLVILVKAVDNKNQQGRAEEIFQR-----LSQRRFALLLDDLRGPIN--LDE---AGV-PDQNGSKIVFTTIMEDACNT- 157 (339)
Q Consensus 90 ~~~~wv~~~~~~~~~~~~~~l~~~-----l~~k~~LlvlDdv~~~~~--l~~---l~~-~~~~~~~ilvTsR~~~~~~~- 157 (339)
+ ++++........++..+ +... ..++.-++|||+++.+.. .+. +.. +..+-..|++|+....+...
T Consensus 90 d-v~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TI 167 (824)
T PRK07764 90 D-VTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTI 167 (824)
T ss_pred c-EEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 2 33443323334444433 3322 245667899999987643 222 212 23444445566555544332
Q ss_pred cCCCceEEecCCCCcc--Ccc------CCChhHHHHHHHHHHHcCCChHHHH
Q 039134 158 MGDQIKFKVDYLRRDD--DVL------NFHPDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 158 ~~~~~~~~l~~L~~~~--~~~------~~~~~~~~~~~~i~~~~~G~Plal~ 201 (339)
......+++.+++.++ ... ............+++.++|.+..+.
T Consensus 168 rSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 168 RSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred HhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 2345678899998777 111 1122245566788999999885443
No 41
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=5.3e-07 Score=83.04 Aligned_cols=164 Identities=11% Similarity=0.119 Sum_probs=102.8
Q ss_pred cccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhc---ccCCcceEEEEE-ecCCCCHHHHHHHHHH
Q 039134 37 VKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSD---TRHNFYLVILVK-AVDNKNQQGRAEEIFQ 112 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~-~~~~~~~~~~~~~l~~ 112 (339)
.++|-+..++.+...+..+.-...++++|+.|+|||++|+.+++.+.- ...+.+...|.. .+.....++..+.+ +
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~-~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNII-E 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHH-H
Confidence 468999999999999988756678899999999999999999986521 124556555544 23344455544333 3
Q ss_pred Hh-----cCCceEEEEecCCCCCC--ccccc---CCCCCCceEEEeCCChHHH-h-hcCCCceEEecCCCCcc--CccCC
Q 039134 113 RL-----SQRRFALLLDDLRGPIN--LDEAG---VPDQNGSKIVFTTIMEDAC-N-TMGDQIKFKVDYLRRDD--DVLNF 178 (339)
Q Consensus 113 ~l-----~~k~~LlvlDdv~~~~~--l~~l~---~~~~~~~~ilvTsR~~~~~-~-~~~~~~~~~l~~L~~~~--~~~~~ 178 (339)
.+ .+++-++|+|+++.... ++.+. .....++.+|++|.+.... . .......+.+.++++++ .....
T Consensus 84 ~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 84 EVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred HHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHH
Confidence 22 34566888888865432 33331 1144566777666554321 1 12234678888988887 11110
Q ss_pred C--hhHHHHHHHHHHHcCCChHHHH
Q 039134 179 H--PDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 179 ~--~~~~~~~~~i~~~~~G~Plal~ 201 (339)
. ....+.++.++..++|.|.-+.
T Consensus 164 ~~~~~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 164 KYNDIKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HhcCCCHHHHHHHHHHcCCCHHHHH
Confidence 0 1224456778899999887544
No 42
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=6.1e-07 Score=87.50 Aligned_cols=173 Identities=13% Similarity=0.095 Sum_probs=104.0
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc------------------cCCcceE
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT------------------RHNFYLV 92 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------------------~~~f~~~ 92 (339)
+|.+-..+||-+..++.|.+++..+.-...++++|+.|+||||+|+.+++.+.-. .+.+..+
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 3444456799999999999999887455678999999999999999999877311 0122224
Q ss_pred EEEEecCCCCHHHHHHHHHHH----hcCCceEEEEecCCCCCC--cccc---cCCCCCCceEE-EeCCChHHH-hhcCCC
Q 039134 93 ILVKAVDNKNQQGRAEEIFQR----LSQRRFALLLDDLRGPIN--LDEA---GVPDQNGSKIV-FTTIMEDAC-NTMGDQ 161 (339)
Q Consensus 93 ~wv~~~~~~~~~~~~~~l~~~----l~~k~~LlvlDdv~~~~~--l~~l---~~~~~~~~~il-vTsR~~~~~-~~~~~~ 161 (339)
+.+........++..+.+.+. ..++.-++|+|+++.... .+.+ .......+.+| +||....+. ......
T Consensus 91 ~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc 170 (509)
T PRK14958 91 FEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRC 170 (509)
T ss_pred EEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHh
Confidence 444433344455443332221 135667899999987643 2222 11122345444 455443332 112223
Q ss_pred ceEEecCCCCcc--C----c--cCCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 162 IKFKVDYLRRDD--D----V--LNFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 162 ~~~~l~~L~~~~--~----~--~~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
..+++.+++.++ . . .....-..+....+++.++|.+..+..+
T Consensus 171 ~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 171 LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 567888888877 1 1 1122234566778999999988554433
No 43
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=8e-07 Score=84.97 Aligned_cols=170 Identities=11% Similarity=0.050 Sum_probs=100.5
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccC-Ccc-----------------eE
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH-NFY-----------------LV 92 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~f~-----------------~~ 92 (339)
+|.+-..+||.+..+..|..++..+.-...++++|+.|+||||+|+.+++.+.-... .+. .+
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDV 92 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccc
Confidence 344455679999999999999998733467899999999999999999988741110 000 01
Q ss_pred EEEEecCCCCHHHHHHHHHHH-----hcCCceEEEEecCCCCCC--cccccCC---CCCCceEE-EeCCChHHH-hhcCC
Q 039134 93 ILVKAVDNKNQQGRAEEIFQR-----LSQRRFALLLDDLRGPIN--LDEAGVP---DQNGSKIV-FTTIMEDAC-NTMGD 160 (339)
Q Consensus 93 ~wv~~~~~~~~~~~~~~l~~~-----l~~k~~LlvlDdv~~~~~--l~~l~~~---~~~~~~il-vTsR~~~~~-~~~~~ 160 (339)
+.+........+.. ..+.+. ..++.-++|+|+++.... ++.+... ....+.+| .||....+. .....
T Consensus 93 iEIdaas~~gVd~I-ReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 93 LEIDAASNRGIENI-RELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred eeechhhcccHHHH-HHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 11111111222222 222222 245677999999986643 4444221 22344444 455544332 22223
Q ss_pred CceEEecCCCCcc------Cc--cCCChhHHHHHHHHHHHcCCChHHHH
Q 039134 161 QIKFKVDYLRRDD------DV--LNFHPDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 161 ~~~~~l~~L~~~~------~~--~~~~~~~~~~~~~i~~~~~G~Plal~ 201 (339)
...+.+.+++.++ .. ...-.-..+....|++.++|.+.-.-
T Consensus 172 Cq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred hheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHH
Confidence 4568999999877 11 11122346678889999999885433
No 44
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.59 E-value=1.3e-06 Score=87.83 Aligned_cols=255 Identities=17% Similarity=0.165 Sum_probs=131.8
Q ss_pred cccccchhHHHHHHHHHhhc----CCCcEEEEEEeCCCchHHHHHHHHHhhhhccc--CCcc--eEEEEEecC-------
Q 039134 35 LSVKKGMESILDEVWECFED----DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR--HNFY--LVILVKAVD------- 99 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~f~--~~~wv~~~~------- 99 (339)
++.+.|||.++++|...|.. .....++.|+|++|+|||++++.+++.+.... .... .++++.+..
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45779999999999999875 22335678999999999999999998773211 1111 245665431
Q ss_pred ---------------CCCHHHHHHHHHHHhc---CCceEEEEecCCCCCC-----cccc-cCCCCCCceEEE--eCCChH
Q 039134 100 ---------------NKNQQGRAEEIFQRLS---QRRFALLLDDLRGPIN-----LDEA-GVPDQNGSKIVF--TTIMED 153 (339)
Q Consensus 100 ---------------~~~~~~~~~~l~~~l~---~k~~LlvlDdv~~~~~-----l~~l-~~~~~~~~~ilv--TsR~~~ 153 (339)
.......+..+...+. +...+||||+++.... +-.+ .++...++++++ ++....
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 1112233444444442 2245899999975531 2111 122223344333 443321
Q ss_pred H--------HhhcCCCceEEecCCCCcc---------Ccc---CCChhHHHHHHHHHHHcCCChHHHHHHHHHhccCC-C
Q 039134 154 A--------CNTMGDQIKFKVDYLRRDD---------DVL---NFHPDILELAETVADLCRGLPLAHITIGRAMANTR-N 212 (339)
Q Consensus 154 ~--------~~~~~~~~~~~l~~L~~~~---------~~~---~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~~-~ 212 (339)
. ...+. ...+...|++.++ ... .....++-.++.+++..|-.-.||.++-.+..... .
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegs 992 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQ 992 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCC
Confidence 1 11111 2235667777777 111 11122233334344444557777777666654322 1
Q ss_pred CC-CcChhH--------HHHHhhcCCCcchhhHHHhHhcccCC---CCcccHHHHHHHHH--Hc--C-CCccCCchhhHH
Q 039134 213 RM-GDLILP--------RLKFSYDHLSTETHKTCFSFCSLFLK---NQLIRKDELVDLWI--GE--G-LFRGSHNIVVAR 275 (339)
Q Consensus 213 ~~-~~~~~~--------~l~~~~~~L~~~~~k~~~~~la~f~~---~~~i~~~~li~~w~--a~--~-~~~~~~~~~~~~ 275 (339)
.. .+.+.. .+......||. ..+-++..+...-. ...++...+....- ++ | .+.. ....+
T Consensus 993 kVT~eHVrkAleeiE~srI~e~IktLPl-HqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv---~plTq 1068 (1164)
T PTZ00112 993 KIVPRDITEATNQLFDSPLTNAINYLPW-PFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGM---CSNNE 1068 (1164)
T ss_pred ccCHHHHHHHHHHHHhhhHHHHHHcCCH-HHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCC---CCcHH
Confidence 10 011111 22334456877 55555543433211 22355555544332 11 1 1111 11222
Q ss_pred HHHHHHHHHHHhCCceeeec
Q 039134 276 MQGKCIIDSLIGVCLLEEVQ 295 (339)
Q Consensus 276 ~~~~~~l~~L~~~sLi~~~~ 295 (339)
....+|.+|...|+|-..+
T Consensus 1069 -RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1069 -LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred -HHHHHHHHHHhcCeEEecC
Confidence 6778899999999998764
No 45
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=6.6e-07 Score=84.45 Aligned_cols=164 Identities=14% Similarity=0.047 Sum_probs=97.3
Q ss_pred cccchhHHHHHHHHHhhcCC---------CcEEEEEEeCCCchHHHHHHHHHhhhhcc------------------cCCc
Q 039134 37 VKKGMESILDEVWECFEDDF---------PMRIICLYGVSGVGKTTLLVNFNSKFSDT------------------RHNF 89 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------------------~~~f 89 (339)
.++|-+..++.|...+..+. -...++++|++|+|||++|..+++...-. ..|.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 47899999999999998762 35789999999999999999998765211 0112
Q ss_pred ceEEEEEec-CCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc----cCCCCCCceEEEeCCChHHHhh
Q 039134 90 YLVILVKAV-DNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVFTTIMEDACNT 157 (339)
Q Consensus 90 ~~~~wv~~~-~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilvTsR~~~~~~~ 157 (339)
+ +.++... .....++. ..+.+.+ .+++-++|+|+++.... .+.+ ..|......|++|+....+...
T Consensus 86 D-~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpT 163 (394)
T PRK07940 86 D-VRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPT 163 (394)
T ss_pred C-EEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHH
Confidence 2 2233221 22334433 3344433 24556889999976643 2222 1223333344445553333322
Q ss_pred -cCCCceEEecCCCCcc--CccC-CChhHHHHHHHHHHHcCCChHHHHH
Q 039134 158 -MGDQIKFKVDYLRRDD--DVLN-FHPDILELAETVADLCRGLPLAHIT 202 (339)
Q Consensus 158 -~~~~~~~~l~~L~~~~--~~~~-~~~~~~~~~~~i~~~~~G~Plal~~ 202 (339)
......+.+.+++.++ .... ......+.+..+++.++|.|.....
T Consensus 164 IrSRc~~i~f~~~~~~~i~~~L~~~~~~~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 164 IRSRCRHVALRTPSVEAVAEVLVRRDGVDPETARRAARASQGHIGRARR 212 (394)
T ss_pred HHhhCeEEECCCCCHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHH
Confidence 2334678899998877 2211 1112345677889999999964433
No 46
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.59 E-value=6e-07 Score=78.72 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=90.7
Q ss_pred cchhHHH-HHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhcCC
Q 039134 39 KGMESIL-DEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLSQR 117 (339)
Q Consensus 39 vGR~~~~-~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~k 117 (339)
.|+.... ..+.++.........+.|+|++|+|||+||+.+++... .... ...+++..... .. .... ..
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~------~~-~~~~-~~ 90 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPL------LA-FDFD-PE 90 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhH------HH-Hhhc-cc
Confidence 4654444 44444444323457899999999999999999998863 1222 34444432211 11 1122 23
Q ss_pred ceEEEEecCCCCCCcc--ccc--CC--CCCCc-eEEEeCCChHHH--------hhcCCCceEEecCCCCcc-----Cc--
Q 039134 118 RFALLLDDLRGPINLD--EAG--VP--DQNGS-KIVFTTIMEDAC--------NTMGDQIKFKVDYLRRDD-----DV-- 175 (339)
Q Consensus 118 ~~LlvlDdv~~~~~l~--~l~--~~--~~~~~-~ilvTsR~~~~~--------~~~~~~~~~~l~~L~~~~-----~~-- 175 (339)
.-++++||++...... .+. .. ...+. .+|+|++..... ..+.....+++.++++++ ..
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 4578999996543211 120 11 23333 466776653221 122224678999999776 11
Q ss_pred -cCCChhHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 039134 176 -LNFHPDILELAETVADLCRGLPLAHITIGRAMA 208 (339)
Q Consensus 176 -~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~ 208 (339)
.....-.++..+.+++.+.|++..+..+...|.
T Consensus 171 ~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 171 AERGLQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 112223456777888889999988877766653
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.2e-06 Score=86.90 Aligned_cols=171 Identities=14% Similarity=0.151 Sum_probs=102.9
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc-----------------------cCC
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT-----------------------RHN 88 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----------------------~~~ 88 (339)
+.+-..+||-+..++.|.+++..+.-...++++|+.|+||||+|+.+++.+.-. .+.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGR 91 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCC
Confidence 344456799999999999999987455788999999999999999997776310 001
Q ss_pred cceEEEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccccCC---CCCCce-EEEeCCChHHH-h
Q 039134 89 FYLVILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEAGVP---DQNGSK-IVFTTIMEDAC-N 156 (339)
Q Consensus 89 f~~~~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l~~~---~~~~~~-ilvTsR~~~~~-~ 156 (339)
+..++++........++..+.+ +.. .++.-++|||+++.... .+.+... ....+. |++|+....+. .
T Consensus 92 h~D~~eldaas~~~Vd~iReli-~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLL-EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCceeecCcccccCHHHHHHHH-HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 1123333332333444433333 222 24556899999987643 3333111 223444 44555544332 2
Q ss_pred hcCCCceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 157 TMGDQIKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 157 ~~~~~~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
.......+++.+++.++ .. ........+....|++.++|.+..+..+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22334679999999887 11 1122234567788899999977544433
No 48
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.5e-06 Score=81.23 Aligned_cols=171 Identities=11% Similarity=0.037 Sum_probs=101.5
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc-C-----------------------
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR-H----------------------- 87 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~----------------------- 87 (339)
|.....++|.+...+.|.+.+..+.-...++++|+.|+||+++|..+++.+.-.. .
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 4445678999999999999999874567899999999999999998888763100 0
Q ss_pred ----CcceEEEEEec---------CCCCHHHHHHHHHHHhc-----CCceEEEEecCCCCCC--ccccc---CCCCCCce
Q 039134 88 ----NFYLVILVKAV---------DNKNQQGRAEEIFQRLS-----QRRFALLLDDLRGPIN--LDEAG---VPDQNGSK 144 (339)
Q Consensus 88 ----~f~~~~wv~~~---------~~~~~~~~~~~l~~~l~-----~k~~LlvlDdv~~~~~--l~~l~---~~~~~~~~ 144 (339)
......|+.-. ....+++ +..+.+.+. +.+-++|+|+++..+. ...+. .....++.
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 00112233211 0112333 334444442 5677999999976543 22221 11233445
Q ss_pred EEEeCCCh-HHHh-hcCCCceEEecCCCCcc--CccC--CChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 145 IVFTTIME-DACN-TMGDQIKFKVDYLRRDD--DVLN--FHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 145 ilvTsR~~-~~~~-~~~~~~~~~l~~L~~~~--~~~~--~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
+|++|.+. .+.. .......+.+.+++.++ .... ...........+++.++|.|+....+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55555543 3322 22334679999999888 1111 11112223367899999999855443
No 49
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=7.9e-07 Score=87.19 Aligned_cols=172 Identities=13% Similarity=0.124 Sum_probs=101.4
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc-------------------CCcce
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR-------------------HNFYL 91 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~ 91 (339)
+|..-..++|++..++.+.+.+..+.....++++|+.|+||||+|+.+++.+.-.. .+. .
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~-D 89 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSV-D 89 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCC-c
Confidence 34444567999999999999998864567899999999999999999988763100 011 1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc----cCCCCCCceEEEeCCChHHHh-hcC
Q 039134 92 VILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVFTTIMEDACN-TMG 159 (339)
Q Consensus 92 ~~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilvTsR~~~~~~-~~~ 159 (339)
+.++........++.. .+.+.+ .+++-++|+|+++.... ...+ -.|......|++|+....+.. ...
T Consensus 90 iieIdaas~igVd~IR-eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~S 168 (605)
T PRK05896 90 IVELDAASNNGVDEIR-NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIIS 168 (605)
T ss_pred eEEeccccccCHHHHH-HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHh
Confidence 2333322223333332 232222 23445799999976532 2333 111233333445554433322 223
Q ss_pred CCceEEecCCCCcc------Cc--cCCChhHHHHHHHHHHHcCCChH-HHHHHH
Q 039134 160 DQIKFKVDYLRRDD------DV--LNFHPDILELAETVADLCRGLPL-AHITIG 204 (339)
Q Consensus 160 ~~~~~~l~~L~~~~------~~--~~~~~~~~~~~~~i~~~~~G~Pl-al~~~~ 204 (339)
....+++.+++.++ .. .....-..+.+..+++.++|.+. |+..+-
T Consensus 169 Rcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 169 RCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34578899998887 10 11112335677889999999765 444443
No 50
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=6e-07 Score=88.05 Aligned_cols=171 Identities=18% Similarity=0.170 Sum_probs=101.9
Q ss_pred CccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc------------------CCcceEEE
Q 039134 33 DTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR------------------HNFYLVIL 94 (339)
Q Consensus 33 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~w 94 (339)
.+-..+||-+..++.|..++..+.-...++++|+.|+||||+|+.+++.+.-.. +.|...++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 334567999999999999999874556789999999999999999988773100 11222344
Q ss_pred EEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc----cCCCCCCceEEEeCCChHHH-hhcCCCc
Q 039134 95 VKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVFTTIMEDAC-NTMGDQI 162 (339)
Q Consensus 95 v~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilvTsR~~~~~-~~~~~~~ 162 (339)
+........+...+ +.... .+++-++|+|+++.... .+.+ -.+..+-..|++|+....+. .......
T Consensus 93 i~~~~~~~vd~ir~-l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~ 171 (527)
T PRK14969 93 VDAASNTQVDAMRE-LLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL 171 (527)
T ss_pred eeccccCCHHHHHH-HHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHH
Confidence 43333334444332 32322 35667999999986653 2222 11123333444555443332 1112235
Q ss_pred eEEecCCCCcc------Ccc--CCChhHHHHHHHHHHHcCCChH-HHHHHH
Q 039134 163 KFKVDYLRRDD------DVL--NFHPDILELAETVADLCRGLPL-AHITIG 204 (339)
Q Consensus 163 ~~~l~~L~~~~------~~~--~~~~~~~~~~~~i~~~~~G~Pl-al~~~~ 204 (339)
.+++.+++.++ ... ..-......+..+++.++|.+. ++..+-
T Consensus 172 ~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 172 QFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68888888877 111 1122345667889999999775 444443
No 51
>PF14516 AAA_35: AAA-like domain
Probab=98.56 E-value=1.3e-05 Score=74.22 Aligned_cols=174 Identities=10% Similarity=0.073 Sum_probs=104.4
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC------------
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD------------ 99 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~------------ 99 (339)
+..++..|.|...-+++.+.+... ...+.|.|+-.+|||+|...+.+... . ..|. ++++++..
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~--G~~~~I~apRq~GKTSll~~l~~~l~-~-~~~~-~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP--GSYIRIKAPRQMGKTSLLLRLLERLQ-Q-QGYR-CVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC--CCEEEEECcccCCHHHHHHHHHHHHH-H-CCCE-EEEEEeecCCCcccCCHHHH
Confidence 344567799997777888877763 38999999999999999999999884 2 3443 44666550
Q ss_pred -------------------------CCCHHHHHHHHHHHh---cCCceEEEEecCCCCCCcc----cc-----cCC----
Q 039134 100 -------------------------NKNQQGRAEEIFQRL---SQRRFALLLDDLRGPINLD----EA-----GVP---- 138 (339)
Q Consensus 100 -------------------------~~~~~~~~~~l~~~l---~~k~~LlvlDdv~~~~~l~----~l-----~~~---- 138 (339)
..+.......+.+.+ .+++++|++|+++..-... .+ .+.
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 001111111222222 2589999999997543211 11 000
Q ss_pred --CCCCc--eEEEeCCChHHH-----hhcCCCceEEecCCCCcc-----CccCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 039134 139 --DQNGS--KIVFTTIMEDAC-----NTMGDQIKFKVDYLRRDD-----DVLNFHPDILELAETVADLCRGLPLAHITIG 204 (339)
Q Consensus 139 --~~~~~--~ilvTsR~~~~~-----~~~~~~~~~~l~~L~~~~-----~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~ 204 (339)
..... -+++.+...... ..+.....++|.+|+.++ +..... -.....+.+...+||+|..+..++
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~~~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-FSQEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-CCHHHHHHHHHHHCCCHHHHHHHH
Confidence 01111 222222111111 112234578899999888 222111 223348999999999999999999
Q ss_pred HHhccCC
Q 039134 205 RAMANTR 211 (339)
Q Consensus 205 ~~L~~~~ 211 (339)
..+....
T Consensus 241 ~~l~~~~ 247 (331)
T PF14516_consen 241 YLLVEEQ 247 (331)
T ss_pred HHHHHcc
Confidence 9997754
No 52
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=8.4e-07 Score=84.33 Aligned_cols=170 Identities=12% Similarity=0.071 Sum_probs=100.4
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc------------------------
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR------------------------ 86 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------------ 86 (339)
+|.+-..++|.+..++.|..++..+.-...++++|++|+||||+|..+++...-..
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 34445567999999999999998874446799999999999999999998773110
Q ss_pred ---CCcceEEEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--ccccc---CCCCCCceE-EEeCCCh
Q 039134 87 ---HNFYLVILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEAG---VPDQNGSKI-VFTTIME 152 (339)
Q Consensus 87 ---~~f~~~~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l~---~~~~~~~~i-lvTsR~~ 152 (339)
.+++ +..+........++..+ +.+.+ .+.+-++|+|+++.... ++.+. ......+.+ ++|++..
T Consensus 91 ~~~~~~n-~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 91 DAGTSLN-ISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred hcCCCCC-eEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 0111 11111111222333332 33333 34566899999976642 33331 112234444 4455544
Q ss_pred HHHhhc-CCCceEEecCCCCcc--Ccc------CCChhHHHHHHHHHHHcCCChHHHHH
Q 039134 153 DACNTM-GDQIKFKVDYLRRDD--DVL------NFHPDILELAETVADLCRGLPLAHIT 202 (339)
Q Consensus 153 ~~~~~~-~~~~~~~l~~L~~~~--~~~------~~~~~~~~~~~~i~~~~~G~Plal~~ 202 (339)
.+.... .....+++.++++++ ... ....-..+.+..+++.++|.+.-+..
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 333221 123568888998777 111 12234467888999999998764444
No 53
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.2e-06 Score=79.78 Aligned_cols=171 Identities=11% Similarity=0.065 Sum_probs=103.6
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc-----c-CCc----------------
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT-----R-HNF---------------- 89 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----~-~~f---------------- 89 (339)
|.....++|-+...+.+...+..+.....++|+|+.|+||||+|..+++.+.-. . ...
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQG 98 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcC
Confidence 334456799999999999999988556789999999999999999998887420 0 000
Q ss_pred --ceEEEEEec---------CCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc----cCCCCCCceEEE
Q 039134 90 --YLVILVKAV---------DNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVF 147 (339)
Q Consensus 90 --~~~~wv~~~---------~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilv 147 (339)
....++... .....++. ..+.+++ .++.-++|+|+++..+. .+.+ ..|......|++
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 001222111 11223332 3444444 24667999999976643 2222 222334444556
Q ss_pred eCCChHHHh-hcCCCceEEecCCCCcc-----CccCCC-hhHHHHHHHHHHHcCCChHHHHHH
Q 039134 148 TTIMEDACN-TMGDQIKFKVDYLRRDD-----DVLNFH-PDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 148 TsR~~~~~~-~~~~~~~~~l~~L~~~~-----~~~~~~-~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
|++...+.. .......+.+.+++.++ ...... ....+.+..+++.++|.|.....+
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 655443321 11233689999999988 111111 122455778999999999855443
No 54
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=1.4e-06 Score=86.39 Aligned_cols=174 Identities=18% Similarity=0.129 Sum_probs=105.1
Q ss_pred cccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc--C--C-----------------
Q 039134 30 DKVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR--H--N----------------- 88 (339)
Q Consensus 30 ~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~--~----------------- 88 (339)
.++.+-..++|.+..++.|.+.+..+.-...++++|+.|+||||+|+.+++.+.-.. . .
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~ 97 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME 97 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc
Confidence 344455667999999999999999874566899999999999999999998763110 0 0
Q ss_pred --cceEEEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--ccccc---CCCCCCce-EEEeCCChHHH
Q 039134 89 --FYLVILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEAG---VPDQNGSK-IVFTTIMEDAC 155 (339)
Q Consensus 89 --f~~~~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l~---~~~~~~~~-ilvTsR~~~~~ 155 (339)
...++++........++.. .+.+.+ .+++-++|+|+++.... .+.+. ......+. |++|+....+.
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 0112233322233344433 233333 24556899999976643 22221 11223444 44555544432
Q ss_pred hh-cCCCceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 039134 156 NT-MGDQIKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPLAHITIG 204 (339)
Q Consensus 156 ~~-~~~~~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Plal~~~~ 204 (339)
.. ......+++.+++.++ .. ........+.+..|++.++|.+..+....
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 2234678899998877 11 11222345778889999999987665444
No 55
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=2.1e-06 Score=85.35 Aligned_cols=170 Identities=15% Similarity=0.101 Sum_probs=101.9
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc------------------------
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR------------------------ 86 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------------ 86 (339)
++.+-..+||.+..++.|...+..+.-...++++|+.|+||||+|+.+++.+.-..
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 34445667999999999999998874557799999999999999999988773100
Q ss_pred ---CCcceEEEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc----cCCCCCCceEEEeCCCh
Q 039134 87 ---HNFYLVILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVFTTIME 152 (339)
Q Consensus 87 ---~~f~~~~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilvTsR~~ 152 (339)
.+++. ..+........++.... .+.+ .+.+-++|+|+++.... .+.+ ..|..+...|++|++..
T Consensus 91 ~~g~~~n~-~~~d~~s~~~vd~Ir~l-~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 91 DAGTSLNI-SEFDAASNNSVDDIRQL-RENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred hccCCCCe-EEecccccCCHHHHHHH-HHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 11221 11111122223443332 2222 34566889999976643 2222 12233334455565544
Q ss_pred HHHh-hcCCCceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChH-HHHH
Q 039134 153 DACN-TMGDQIKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPL-AHIT 202 (339)
Q Consensus 153 ~~~~-~~~~~~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Pl-al~~ 202 (339)
.+.. .......+++.+++.++ .. .....-..+.++.+++.++|... ++..
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 4332 22345779999998877 11 11222446778889999999665 4443
No 56
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.52 E-value=5.1e-07 Score=91.22 Aligned_cols=164 Identities=23% Similarity=0.238 Sum_probs=94.5
Q ss_pred ccCccccccchhHHHH---HHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--CCCCHHH
Q 039134 31 KVDTLSVKKGMESILD---EVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--DNKNQQG 105 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~---~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~ 105 (339)
++.+...++|++..+. .+...+..+ ..+.++|+|++|+||||||+.+++... ..|. .+... ...+...
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~~-~~~slLL~GPpGtGKTTLA~aIA~~~~---~~f~---~lna~~~~i~dir~ 95 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKAD-RVGSLILYGPPGVGKTTLARIIANHTR---AHFS---SLNAVLAGVKDLRA 95 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHhc---Ccce---eehhhhhhhHHHHH
Confidence 3444456799999884 566666666 667889999999999999999998763 3332 11111 1111222
Q ss_pred HHHHHHHHh--cCCceEEEEecCCCCCC--cccccCCCCCCceEEE--eCCChHH--H-hhcCCCceEEecCCCCcc---
Q 039134 106 RAEEIFQRL--SQRRFALLLDDLRGPIN--LDEAGVPDQNGSKIVF--TTIMEDA--C-NTMGDQIKFKVDYLRRDD--- 173 (339)
Q Consensus 106 ~~~~l~~~l--~~k~~LlvlDdv~~~~~--l~~l~~~~~~~~~ilv--TsR~~~~--~-~~~~~~~~~~l~~L~~~~--- 173 (339)
......+.+ .+++.+|+||+++.... .+.+......+..+++ ||.+... . ........+.+.+++.++
T Consensus 96 ~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~ 175 (725)
T PRK13341 96 EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQ 175 (725)
T ss_pred HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHH
Confidence 222332222 24677999999976532 3333211334554554 4444321 1 111224578999999887
Q ss_pred ---Ccc---------CCChhHHHHHHHHHHHcCCChHHHH
Q 039134 174 ---DVL---------NFHPDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 174 ---~~~---------~~~~~~~~~~~~i~~~~~G~Plal~ 201 (339)
... ....-..+....|++.+.|....+.
T Consensus 176 IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 176 LLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred HHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 110 1112235667888888888654333
No 57
>PRK05642 DNA replication initiation factor; Validated
Probab=98.51 E-value=1.3e-06 Score=76.93 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=82.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhcCCceEEEEecCCCC---CCccc
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLSQRRFALLLDDLRGP---INLDE 134 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~---~~l~~ 134 (339)
...+.|+|++|+|||.|++.+++... ..-..++|++...-.. ....+.+.+.+-. +||+||+... ..|..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~~~~---~~~~~~~~~~~~d-~LiiDDi~~~~~~~~~~~ 117 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAELLD---RGPELLDNLEQYE-LVCLDDLDVIAGKADWEE 117 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHHHHh---hhHHHHHhhhhCC-EEEEechhhhcCChHHHH
Confidence 36789999999999999999998763 2223467766442111 1123444444333 6788999643 23333
Q ss_pred ccCC-----CCCCceEEEeCCChHH---------HhhcCCCceEEecCCCCcc-----C-c-c-CCChhHHHHHHHHHHH
Q 039134 135 AGVP-----DQNGSKIVFTTIMEDA---------CNTMGDQIKFKVDYLRRDD-----D-V-L-NFHPDILELAETVADL 192 (339)
Q Consensus 135 l~~~-----~~~~~~ilvTsR~~~~---------~~~~~~~~~~~l~~L~~~~-----~-~-~-~~~~~~~~~~~~i~~~ 192 (339)
..+. ...+..+|+|++.... ...+....++++++++.++ + . . ..-.-.++...-+++.
T Consensus 118 ~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~ 197 (234)
T PRK05642 118 ALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTR 197 (234)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 2111 4456778888875432 1222334678888888776 1 0 0 1112224566667777
Q ss_pred cCCChHHHHHHHHHh
Q 039134 193 CRGLPLAHITIGRAM 207 (339)
Q Consensus 193 ~~G~Plal~~~~~~L 207 (339)
+.|....+..+...|
T Consensus 198 ~~~d~r~l~~~l~~l 212 (234)
T PRK05642 198 GTRSMSALFDLLERL 212 (234)
T ss_pred cCCCHHHHHHHHHHH
Confidence 777665555444433
No 58
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.51 E-value=4e-06 Score=78.49 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=100.8
Q ss_pred ccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc-------------------CCcceEEE
Q 039134 34 TLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR-------------------HNFYLVIL 94 (339)
Q Consensus 34 ~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~w 94 (339)
.-..++|.+..++.+.+.+..+.-...++++|++|+|||++|+.++....-.. .+++ ..+
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEE
Confidence 34457999999999999998874557889999999999999999988763110 1233 233
Q ss_pred EEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc---cCCCCCCceEEEeCCChH-HHhh-cCCCc
Q 039134 95 VKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA---GVPDQNGSKIVFTTIMED-ACNT-MGDQI 162 (339)
Q Consensus 95 v~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l---~~~~~~~~~ilvTsR~~~-~~~~-~~~~~ 162 (339)
+........+. ...+.+.+ .+++-++|+|+++.... ...+ .......+.+|++|.+.. +... .....
T Consensus 91 ~~~~~~~~~~~-~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 169 (355)
T TIGR02397 91 IDAASNNGVDD-IREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQ 169 (355)
T ss_pred eeccccCCHHH-HHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhhee
Confidence 33222223322 22333333 24556899999865532 2222 111233455555554433 2221 12235
Q ss_pred eEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChHHHHHHHH
Q 039134 163 KFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPLAHITIGR 205 (339)
Q Consensus 163 ~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Plal~~~~~ 205 (339)
.+++.+++.++ .. .....-..+.+..+++.++|.|..+.....
T Consensus 170 ~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 170 RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 67888887777 10 111223357788899999999876655543
No 59
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=3.3e-06 Score=83.37 Aligned_cols=173 Identities=14% Similarity=0.089 Sum_probs=104.8
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc---------------------CCc
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR---------------------HNF 89 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---------------------~~f 89 (339)
++.+-..+||.+..++.|..++..+.-...++++|+.|+||||+|+.+++.+.-.. .+.
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 34445667999999999999999874556789999999999999999998763100 111
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc----cCCCCCCceEEEeCCChHHHhh-
Q 039134 90 YLVILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVFTTIMEDACNT- 157 (339)
Q Consensus 90 ~~~~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilvTsR~~~~~~~- 157 (339)
.++.+........++.. .+.+.+ .++.-++|+|+++.... .+.+ -.+..+-..|++|+....+...
T Consensus 88 -dvieidaas~~gvd~iR-el~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 88 -DVVELDAASHGGVDDTR-ELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred -eEEEeccccccCHHHHH-HHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 23334332222333332 233222 35667899999976643 2222 1123344445566655544322
Q ss_pred cCCCceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChH-HHHHHHH
Q 039134 158 MGDQIKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPL-AHITIGR 205 (339)
Q Consensus 158 ~~~~~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Pl-al~~~~~ 205 (339)
......+++.+++.++ .. ........+.+..|++.++|.+. +++.+-.
T Consensus 166 ~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 166 RSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2335679999998887 11 11122335567788999999775 4444433
No 60
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.50 E-value=3.5e-08 Score=90.85 Aligned_cols=247 Identities=17% Similarity=0.164 Sum_probs=165.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcc-eEEEEEec------------------CCCCHHHHHHHHHHHhcCC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFY-LVILVKAV------------------DNKNQQGRAEEIFQRLSQR 117 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~------------------~~~~~~~~~~~l~~~l~~k 117 (339)
..+.+.++|+|||||||++-++.+ .. ..|. .++++... ...+.+.....+..+..++
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~---~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~r 88 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA---SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDR 88 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh---hhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhh
Confidence 458999999999999999999998 32 4554 55555544 1222234455666777889
Q ss_pred ceEEEEecCCCCCC-----cccccCCCCCCceEEEeCCChHHHhhcCCCceEEecCCCCcc--------------CccCC
Q 039134 118 RFALLLDDLRGPIN-----LDEAGVPDQNGSKIVFTTIMEDACNTMGDQIKFKVDYLRRDD--------------DVLNF 178 (339)
Q Consensus 118 ~~LlvlDdv~~~~~-----l~~l~~~~~~~~~ilvTsR~~~~~~~~~~~~~~~l~~L~~~~--------------~~~~~ 178 (339)
+.++++||.....+ ...+.. ....-.++.|+|+.... .......+.+|+..+ ..+-.
T Consensus 89 r~llvldncehl~~~~a~~i~all~-~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 89 RALLVLDNCEHLLDACAALIVALLG-ACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHHc-cchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 99999999854321 111111 33445577888875432 334456666666654 22233
Q ss_pred ChhHHHHHHHHHHHcCCChHHHHHHHHHhccCC----------------------CCCCcChhHHHHHhhcCCCcchhhH
Q 039134 179 HPDILELAETVADLCRGLPLAHITIGRAMANTR----------------------NRMGDLILPRLKFSYDHLSTETHKT 236 (339)
Q Consensus 179 ~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~~----------------------~~~~~~~~~~l~~~~~~L~~~~~k~ 236 (339)
..........|.++..|.|++|...++..+.-. ..-.......+..||.-|+. ..+-
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg-we~~ 243 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG-WERA 243 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-HHHH
Confidence 445567888999999999999999988776544 22234677888999999999 8999
Q ss_pred HHhHhcccCCCCcccHHHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHHhCCceeeecCCCcCeEEeChHHHHHHHHHH
Q 039134 237 CFSFCSLFLKNQLIRKDELVDLWIGEGLFRGSHNIVVARMQGKCIIDSLIGVCLLEEVQTSFGNYVKMHDLLRDLALWIA 316 (339)
Q Consensus 237 ~~~~la~f~~~~~i~~~~li~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~~~~~~~~H~lv~~~a~~~~ 316 (339)
.|.-++.|...+... ...|.+.|-... ...-.....+..|++.+++-.......-.|+.-.-++.|+....
T Consensus 244 ~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 244 LFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred Hhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999998766554 233444333221 11123445577889999887766545667788888888888887
Q ss_pred hcccc
Q 039134 317 SQDEG 321 (339)
Q Consensus 317 ~~~~~ 321 (339)
++...
T Consensus 315 ~r~~e 319 (414)
T COG3903 315 HRSGE 319 (414)
T ss_pred HhhhH
Confidence 77654
No 61
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.50 E-value=1.3e-06 Score=74.28 Aligned_cols=150 Identities=14% Similarity=0.073 Sum_probs=85.1
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc-------------------CCcceEEEEEec-CCCCHHHH
Q 039134 47 EVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR-------------------HNFYLVILVKAV-DNKNQQGR 106 (339)
Q Consensus 47 ~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~~~-~~~~~~~~ 106 (339)
.+.+.+..+.-...++++|+.|+|||++|+.+........ .+.+ ..++... .....+..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d-~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPD-LHRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCc-EEEeccccCcCCHHHH
Confidence 4566666663457899999999999999999988873110 1222 2232222 22333333
Q ss_pred HHHHHHHh-----cCCceEEEEecCCCCCC--cccc---cCCCCCCceEEEeCCCh-HHHhh-cCCCceEEecCCCCcc-
Q 039134 107 AEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA---GVPDQNGSKIVFTTIME-DACNT-MGDQIKFKVDYLRRDD- 173 (339)
Q Consensus 107 ~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l---~~~~~~~~~ilvTsR~~-~~~~~-~~~~~~~~l~~L~~~~- 173 (339)
.. +.+.+ .+.+-++|+||++.... .+.+ .......+.+|++|++. .+... ......+.+.+++.++
T Consensus 82 ~~-i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~ 160 (188)
T TIGR00678 82 RE-LVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEAL 160 (188)
T ss_pred HH-HHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHH
Confidence 22 23333 34567899999976533 2222 11123344455555443 22211 1234679999999888
Q ss_pred -CccCCChhHHHHHHHHHHHcCCChH
Q 039134 174 -DVLNFHPDILELAETVADLCRGLPL 198 (339)
Q Consensus 174 -~~~~~~~~~~~~~~~i~~~~~G~Pl 198 (339)
.......-.++.+..+++.++|.|.
T Consensus 161 ~~~l~~~gi~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 161 LQWLIRQGISEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCcc
Confidence 1110001335678899999999885
No 62
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.50 E-value=1.3e-06 Score=90.16 Aligned_cols=138 Identities=13% Similarity=0.132 Sum_probs=82.8
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc---CCcceEEE-EEecC----CCC---H
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR---HNFYLVIL-VKAVD----NKN---Q 103 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~w-v~~~~----~~~---~ 103 (339)
...++||+.++.++.+.|... ....++|+|++|+|||++|..++++..... .-....+| +.++. ... .
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~-~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~ 264 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRR-RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF 264 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcC-CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHH
Confidence 355699999999999998887 566778999999999999999999873110 01122233 33321 111 2
Q ss_pred HHHHHHHHHHhc--CCceEEEEecCCCCC-------Ccc--cccCC--CCCCceEEEeCCChHHHhh-------cCCCce
Q 039134 104 QGRAEEIFQRLS--QRRFALLLDDLRGPI-------NLD--EAGVP--DQNGSKIVFTTIMEDACNT-------MGDQIK 163 (339)
Q Consensus 104 ~~~~~~l~~~l~--~k~~LlvlDdv~~~~-------~l~--~l~~~--~~~~~~ilvTsR~~~~~~~-------~~~~~~ 163 (339)
+..+..+.+.+. +++++|++|+++... +.+ .+..| .....++|-+|........ ......
T Consensus 265 e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~ 344 (852)
T TIGR03345 265 ENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQV 344 (852)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeE
Confidence 234444444443 468999999986542 122 13334 3333455555544322111 112357
Q ss_pred EEecCCCCcc
Q 039134 164 FKVDYLRRDD 173 (339)
Q Consensus 164 ~~l~~L~~~~ 173 (339)
+.+.+++.++
T Consensus 345 i~v~eps~~~ 354 (852)
T TIGR03345 345 VKVEEPDEET 354 (852)
T ss_pred EEeCCCCHHH
Confidence 8899998887
No 63
>PRK09087 hypothetical protein; Validated
Probab=98.47 E-value=1.5e-06 Score=76.06 Aligned_cols=134 Identities=14% Similarity=0.072 Sum_probs=78.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhcCCceEEEEecCCCCCC----cc
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLSQRRFALLLDDLRGPIN----LD 133 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~----l~ 133 (339)
.+.+.|+|++|+|||+|++.+++... ..+++.. .....+...+.+ -+|++||++.... +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~------~~~~~~~~~~~~--~~l~iDDi~~~~~~~~~lf 107 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD--------ALLIHPN------EIGSDAANAAAE--GPVLIEDIDAGGFDETGLF 107 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC--------CEEecHH------HcchHHHHhhhc--CeEEEECCCCCCCCHHHHH
Confidence 46799999999999999998887651 1233221 111112222222 3788899965421 22
Q ss_pred cccCC-CCCCceEEEeCCCh---------HHHhhcCCCceEEecCCCCcc------Cc--cCCChhHHHHHHHHHHHcCC
Q 039134 134 EAGVP-DQNGSKIVFTTIME---------DACNTMGDQIKFKVDYLRRDD------DV--LNFHPDILELAETVADLCRG 195 (339)
Q Consensus 134 ~l~~~-~~~~~~ilvTsR~~---------~~~~~~~~~~~~~l~~L~~~~------~~--~~~~~~~~~~~~~i~~~~~G 195 (339)
.+... ...+..+|+|++.. .....+....++++++++.++ +. .....-.++...-|++.+.|
T Consensus 108 ~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 108 HLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred HHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh
Confidence 22111 45577788888742 223334455789999999877 11 11122335667777777777
Q ss_pred ChHHHHHHHHHh
Q 039134 196 LPLAHITIGRAM 207 (339)
Q Consensus 196 ~Plal~~~~~~L 207 (339)
....+..+...|
T Consensus 188 ~~~~l~~~l~~L 199 (226)
T PRK09087 188 SLFAAQTIVDRL 199 (226)
T ss_pred hHHHHHHHHHHH
Confidence 776666544443
No 64
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.46 E-value=1.6e-06 Score=76.30 Aligned_cols=246 Identities=15% Similarity=0.096 Sum_probs=135.7
Q ss_pred cccCccccccchhHHHHHHHHHhhc----CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCC-CHH
Q 039134 30 DKVDTLSVKKGMESILDEVWECFED----DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNK-NQQ 104 (339)
Q Consensus 30 ~~~~~~~~~vGR~~~~~~l~~~l~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~ 104 (339)
-++.+...|||.++..+++.-.+.. +...--++++||+|.||||||.-+++... .++ -++-++.. ...
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg---vn~----k~tsGp~leK~g 92 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG---VNL----KITSGPALEKPG 92 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc---CCe----EecccccccChh
Confidence 3345556789999999998888865 25678899999999999999999999983 222 22222222 222
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCCCC---------cccccCC----CCCC-----------ceEEEeCCChHHHhhcC-
Q 039134 105 GRAEEIFQRLSQRRFALLLDDLRGPIN---------LDEAGVP----DQNG-----------SKIVFTTIMEDACNTMG- 159 (339)
Q Consensus 105 ~~~~~l~~~l~~k~~LlvlDdv~~~~~---------l~~l~~~----~~~~-----------~~ilvTsR~~~~~~~~~- 159 (339)
++... ...|+ ..=+|.+|.+..... .+.+..- .+.+ +.|=.|||.-.+.+...
T Consensus 93 Dlaai-Lt~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd 170 (332)
T COG2255 93 DLAAI-LTNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD 170 (332)
T ss_pred hHHHH-HhcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH
Confidence 33332 23344 344566788754421 1111000 1222 22335787654322211
Q ss_pred -CCceEEecCCCCcc--------CccCCChhHHHHHHHHHHHcCCChHHHHHHHHHhccCC-----CCCCc----ChhHH
Q 039134 160 -DQIKFKVDYLRRDD--------DVLNFHPDILELAETVADLCRGLPLAHITIGRAMANTR-----NRMGD----LILPR 221 (339)
Q Consensus 160 -~~~~~~l~~L~~~~--------~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~~-----~~~~~----~~~~~ 221 (339)
.....+++-.+.+| .....-.-..+.+.+|++++.|-|.-..-+.+.+++-. ..... .....
T Consensus 171 RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~ 250 (332)
T COG2255 171 RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKM 250 (332)
T ss_pred hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 22456666677666 22223334567889999999999987766666665533 11111 12222
Q ss_pred HHHhhcCCCcchhhHHHhHhcccCCCCcccHHHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHHhCCceeeecC
Q 039134 222 LKFSYDHLSTETHKTCFSFCSLFLKNQLIRKDELVDLWIGEGLFRGSHNIVVARMQGKCIIDSLIGVCLLEEVQT 296 (339)
Q Consensus 222 l~~~~~~L~~~~~k~~~~~la~f~~~~~i~~~~li~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~ 296 (339)
|..--..|.. -.++.+..+.-.+.+-++..+.+.... |- +..+.|+.-+= -|+..|+|+....
T Consensus 251 L~Vd~~GLd~-~D~k~L~~li~~f~GgPVGl~tia~~l---ge-----~~~TiEdv~EP---yLiq~gfi~RTpR 313 (332)
T COG2255 251 LDVDELGLDE-IDRKYLRALIEQFGGGPVGLDTIAAAL---GE-----DRDTIEDVIEP---YLIQQGFIQRTPR 313 (332)
T ss_pred hCcccccccH-HHHHHHHHHHHHhCCCCccHHHHHHHh---cC-----chhHHHHHHhH---HHHHhchhhhCCC
Confidence 2222233444 455566665555545455554443311 11 12233333322 4788999999873
No 65
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=6.2e-06 Score=80.06 Aligned_cols=170 Identities=12% Similarity=0.067 Sum_probs=102.1
Q ss_pred ccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc---c---------------CCcceEEEE
Q 039134 34 TLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT---R---------------HNFYLVILV 95 (339)
Q Consensus 34 ~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~---------------~~f~~~~wv 95 (339)
.-..++|.+..+..+..++..+.-...++++|+.|+||||+|+.++..+.-. . ..+....++
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 3445799999999999999987455678899999999999999998876310 0 112223344
Q ss_pred EecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc----cCCCCCCceEEEeCCChHHHhh-cCCCce
Q 039134 96 KAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVFTTIMEDACNT-MGDQIK 163 (339)
Q Consensus 96 ~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilvTsR~~~~~~~-~~~~~~ 163 (339)
........++. +.+.+.. .+++-++|+|+++.... .+.+ ..|......|++|++...+... ......
T Consensus 94 daas~~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~ 172 (486)
T PRK14953 94 DAASNRGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQR 172 (486)
T ss_pred eCccCCCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceE
Confidence 33222333322 2333332 35667999999976632 2222 2223333445556654433221 223356
Q ss_pred EEecCCCCcc-----Cc---cCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 039134 164 FKVDYLRRDD-----DV---LNFHPDILELAETVADLCRGLPLAHITIG 204 (339)
Q Consensus 164 ~~l~~L~~~~-----~~---~~~~~~~~~~~~~i~~~~~G~Plal~~~~ 204 (339)
+.+.+++.++ .. ........+.+..+++.++|.+..+....
T Consensus 173 i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 173 FIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 8888888777 10 11123345677888999999776555444
No 66
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=4.8e-06 Score=83.39 Aligned_cols=171 Identities=15% Similarity=0.168 Sum_probs=102.9
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccC----------------CcceEEE
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH----------------NFYLVIL 94 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----------------~f~~~~w 94 (339)
+|.+-..++|.+..++.|...+..+.-...++++|+.|+|||++|+.+++.+.-... +++ +++
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vie 91 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIE 91 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEE
Confidence 334445679999999999999998755678899999999999999999887631100 111 122
Q ss_pred EEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc----cCCCCCCceEEEeCCChHHHh-hcCCCc
Q 039134 95 VKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVFTTIMEDACN-TMGDQI 162 (339)
Q Consensus 95 v~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilvTsR~~~~~~-~~~~~~ 162 (339)
+........++ ++.+...+ .+++-++|+|+++.... +..+ -.|......|++|+....+.. ......
T Consensus 92 idaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq 170 (725)
T PRK07133 92 MDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQ 170 (725)
T ss_pred EeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhce
Confidence 22211122332 23333333 35667999999976642 3333 122333344556665544432 223346
Q ss_pred eEEecCCCCcc--Ccc------CCChhHHHHHHHHHHHcCCChH-HHHHH
Q 039134 163 KFKVDYLRRDD--DVL------NFHPDILELAETVADLCRGLPL-AHITI 203 (339)
Q Consensus 163 ~~~l~~L~~~~--~~~------~~~~~~~~~~~~i~~~~~G~Pl-al~~~ 203 (339)
.+++.+++.++ ... ..-....+.+..+++.++|.+. |+..+
T Consensus 171 ~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 171 RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 78999998888 111 1122335667889999999765 44443
No 67
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=4.7e-06 Score=78.52 Aligned_cols=172 Identities=14% Similarity=0.123 Sum_probs=98.5
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc-----cCCcce-EEEEEecCCCCHH
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT-----RHNFYL-VILVKAVDNKNQQ 104 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----~~~f~~-~~wv~~~~~~~~~ 104 (339)
+|.+-..++|.+..++.+.+.+..+.-.+.++++|++|+|||++|+.+++..... ...|.. ++-+........+
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 3444566799999999999999887455789999999999999999998876310 112221 1112111222223
Q ss_pred HHHHHHHHH----hcCCceEEEEecCCCCCC--ccccc---CCCCCCceEEE-eCCChHHHh-hcCCCceEEecCCCCcc
Q 039134 105 GRAEEIFQR----LSQRRFALLLDDLRGPIN--LDEAG---VPDQNGSKIVF-TTIMEDACN-TMGDQIKFKVDYLRRDD 173 (339)
Q Consensus 105 ~~~~~l~~~----l~~k~~LlvlDdv~~~~~--l~~l~---~~~~~~~~ilv-TsR~~~~~~-~~~~~~~~~l~~L~~~~ 173 (339)
.....+... ..+++-++++|+++.... +..+. ......+.+|+ |+....... .......+++.++++++
T Consensus 92 ~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~ 171 (367)
T PRK14970 92 DIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKD 171 (367)
T ss_pred HHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHH
Confidence 332222211 124566899999975533 33331 11223344444 433322221 11233568888888777
Q ss_pred -----Cc---cCCChhHHHHHHHHHHHcCCChHHHHH
Q 039134 174 -----DV---LNFHPDILELAETVADLCRGLPLAHIT 202 (339)
Q Consensus 174 -----~~---~~~~~~~~~~~~~i~~~~~G~Plal~~ 202 (339)
.. ...-.-..+.+..+++.++|.+..+..
T Consensus 172 l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 172 IKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALS 208 (367)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHH
Confidence 10 111223457788888999997664433
No 68
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7.4e-06 Score=81.73 Aligned_cols=169 Identities=15% Similarity=0.119 Sum_probs=102.1
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhh--------------------cccCCcce
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFS--------------------DTRHNFYL 91 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--------------------~~~~~f~~ 91 (339)
+.+-..++|.+..++.|..++..+.-...++++|+.|+||||+|+.++.... ....+|+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n- 91 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN- 91 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-
Confidence 3344567999999999999999874557799999999999999999888762 0112344
Q ss_pred EEEEEecCCCCHHHHHHHHHHH----hcCCceEEEEecCCCCCC--cccc----cCCCCCCceEEEeCCChHHHhh-cCC
Q 039134 92 VILVKAVDNKNQQGRAEEIFQR----LSQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVFTTIMEDACNT-MGD 160 (339)
Q Consensus 92 ~~wv~~~~~~~~~~~~~~l~~~----l~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilvTsR~~~~~~~-~~~ 160 (339)
+..+........++....+... ..+++-++|+|+++.... .+.+ -.|..+-..|++|+....+... ...
T Consensus 92 ~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SR 171 (614)
T PRK14971 92 IHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSR 171 (614)
T ss_pred eEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhh
Confidence 2233332233344444333221 124566889999976643 3333 1112323334456554444322 233
Q ss_pred CceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChHHHH
Q 039134 161 QIKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 161 ~~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Plal~ 201 (339)
...+++.+++.++ .. ...-....+.+..|++.++|...-+.
T Consensus 172 c~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 172 CQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred hheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4678999999888 11 11222335677889999999765443
No 69
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.39 E-value=1.4e-06 Score=75.99 Aligned_cols=169 Identities=17% Similarity=0.116 Sum_probs=89.2
Q ss_pred cccchhHH-HHHHHHHhhcC--CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCC------HHHHH
Q 039134 37 VKKGMESI-LDEVWECFEDD--FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKN------QQGRA 107 (339)
Q Consensus 37 ~~vGR~~~-~~~l~~~l~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~------~~~~~ 107 (339)
.++|-..+ .-.....+... .....+.|+|+.|+|||.|.+.+++...+..... .+++++...-.. .+...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~-~v~y~~~~~f~~~~~~~~~~~~~ 88 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGK-RVVYLSAEEFIREFADALRDGEI 88 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS--EEEEEHHHHHHHHHHHHHTTSH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccc-cceeecHHHHHHHHHHHHHcccc
Confidence 34565332 23333334432 2345689999999999999999999874222222 466765431000 00112
Q ss_pred HHHHHHhcCCceEEEEecCCCCCC---cccccCC-----CCCCceEEEeCCChH---------HHhhcCCCceEEecCCC
Q 039134 108 EEIFQRLSQRRFALLLDDLRGPIN---LDEAGVP-----DQNGSKIVFTTIMED---------ACNTMGDQIKFKVDYLR 170 (339)
Q Consensus 108 ~~l~~~l~~k~~LlvlDdv~~~~~---l~~l~~~-----~~~~~~ilvTsR~~~---------~~~~~~~~~~~~l~~L~ 170 (339)
..+++.+. .-=+|++||++.... |....+. ...|.++|+|++... +...+....++++.+++
T Consensus 89 ~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd 167 (219)
T PF00308_consen 89 EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPD 167 (219)
T ss_dssp HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----
T ss_pred hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCC
Confidence 23334444 445889999975532 2222111 455778999986531 22333455679999998
Q ss_pred Ccc--------CccCCChhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039134 171 RDD--------DVLNFHPDILELAETVADLCRGLPLAHITIGRAM 207 (339)
Q Consensus 171 ~~~--------~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L 207 (339)
.++ .....-.-.++.++-|++.+.+..-.|..+...|
T Consensus 168 ~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 168 DEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 877 1111222345667778888887777666554433
No 70
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=5.3e-05 Score=70.90 Aligned_cols=250 Identities=16% Similarity=0.203 Sum_probs=136.9
Q ss_pred cccccchhHHHHHHHHHhhc---CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec-------------
Q 039134 35 LSVKKGMESILDEVWECFED---DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------------- 98 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------------- 98 (339)
+..+.+|+.+++++...|.. +..+.-+.|+|++|+|||+.++.+++.+........ ++++++.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 34589999999999998875 234555999999999999999999999853323332 5666554
Q ss_pred --------CCCCHHHHHHHHHHHhc--CCceEEEEecCCCCCCc-----ccc-cCCCCCCce--EEEeCCChHHH-----
Q 039134 99 --------DNKNQQGRAEEIFQRLS--QRRFALLLDDLRGPINL-----DEA-GVPDQNGSK--IVFTTIMEDAC----- 155 (339)
Q Consensus 99 --------~~~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~~l-----~~l-~~~~~~~~~--ilvTsR~~~~~----- 155 (339)
.+.+..+....+.+.+. ++.+++|||+++....- -.+ ..+....++ +|..+.+....
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 22344555556666664 47789999999755332 122 222222333 34444444322
Q ss_pred ---hhcCCCceEEecCCCCcc----------CccC---CChhHHHHHHHHHHHcC-CChHHHHHHHHHh--ccCC--CCC
Q 039134 156 ---NTMGDQIKFKVDYLRRDD----------DVLN---FHPDILELAETVADLCR-GLPLAHITIGRAM--ANTR--NRM 214 (339)
Q Consensus 156 ---~~~~~~~~~~l~~L~~~~----------~~~~---~~~~~~~~~~~i~~~~~-G~Plal~~~~~~L--~~~~--~~~ 214 (339)
..++. ..+...|-+.++ ..+. ..+..-+++..++...+ ---.||..+-.+. .+.. ...
T Consensus 175 rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v 253 (366)
T COG1474 175 RVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKV 253 (366)
T ss_pred hhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCc
Confidence 22222 337778887777 1121 12233344444444444 4556666554433 2221 000
Q ss_pred -Cc--------ChhHHHHHhhcCCCcchhhHHHhHhcccCCCCcccHHHHHHHH--HHcCCCccCCchhhHHHHHHHHHH
Q 039134 215 -GD--------LILPRLKFSYDHLSTETHKTCFSFCSLFLKNQLIRKDELVDLW--IGEGLFRGSHNIVVARMQGKCIID 283 (339)
Q Consensus 215 -~~--------~~~~~l~~~~~~L~~~~~k~~~~~la~f~~~~~i~~~~li~~w--~a~~~~~~~~~~~~~~~~~~~~l~ 283 (339)
.+ .-...+.-.+..|+. ..+-.+..++..- ..+....+-... +.+.+ +. ......+++.
T Consensus 254 ~~~~v~~a~~~~~~~~~~~~~~~L~~-~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~-----~~--~~~~~~~ii~ 323 (366)
T COG1474 254 SEDHVREAQEEIERDVLEEVLKTLPL-HQKIVLLAIVELT--VEISTGELYDVYESLCERL-----RT--SQRRFSDIIS 323 (366)
T ss_pred CHHHHHHHHHHhhHHHHHHHHHcCCH-hHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhh-----Cc--hHHHHHHHHH
Confidence 00 111223344677877 5555554444332 233333333222 12111 11 2345667899
Q ss_pred HHHhCCceeeecC
Q 039134 284 SLIGVCLLEEVQT 296 (339)
Q Consensus 284 ~L~~~sLi~~~~~ 296 (339)
+|...|++.....
T Consensus 324 ~L~~lgiv~~~~~ 336 (366)
T COG1474 324 ELEGLGIVSASLI 336 (366)
T ss_pred HHHhcCeEEeeec
Confidence 9999999987654
No 71
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=5e-06 Score=82.07 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=105.3
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc------------------CCcceE
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR------------------HNFYLV 92 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~ 92 (339)
++.+-..++|-+..++.|...+..+.-...++++|+.|+||||+|+.+++.+.-.. .....+
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 34445567999999999999998873468899999999999999999998874110 000113
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc---cCCCCCCceEEE-eCCChHHHhh-cCC
Q 039134 93 ILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA---GVPDQNGSKIVF-TTIMEDACNT-MGD 160 (339)
Q Consensus 93 ~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l---~~~~~~~~~ilv-TsR~~~~~~~-~~~ 160 (339)
+++........+.. +.+.+.+ .+++-++|+|+++.... .+.+ .........+|+ |+....+... ...
T Consensus 91 ~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SR 169 (624)
T PRK14959 91 VEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSR 169 (624)
T ss_pred EEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhh
Confidence 34432222233332 2233322 35667999999976632 2232 111223344444 5443433321 223
Q ss_pred CceEEecCCCCcc--Ccc------CCChhHHHHHHHHHHHcCCCh-HHHHHHHHHh
Q 039134 161 QIKFKVDYLRRDD--DVL------NFHPDILELAETVADLCRGLP-LAHITIGRAM 207 (339)
Q Consensus 161 ~~~~~l~~L~~~~--~~~------~~~~~~~~~~~~i~~~~~G~P-lal~~~~~~L 207 (339)
...+++.+++.++ ... ....-..+.++.|++.++|.+ .++..+...+
T Consensus 170 cq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 170 CQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3568899998887 111 122234667888999999965 6777776554
No 72
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.38 E-value=4.6e-07 Score=76.43 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=33.7
Q ss_pred cccchhHHHHHHHHHhh--cCCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 37 VKKGMESILDEVWECFE--DDFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.||||+++++++...+. .....+.++|+|++|+|||+|.+.++....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999993 234679999999999999999999999984
No 73
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.37 E-value=2.4e-06 Score=87.38 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=63.0
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc--CCc-ceEEEE-Eec---C-C---CCH
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR--HNF-YLVILV-KAV---D-N---KNQ 103 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~f-~~~~wv-~~~---~-~---~~~ 103 (339)
...++||+.+++++.+.|... ...-++++|++|+|||++|+.++++..... ..+ ...+|. +.+ . . -..
T Consensus 181 l~~~igr~~ei~~~~~~L~~~-~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~ 259 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRR-KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF 259 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcC-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchH
Confidence 346799999999999988876 566778999999999999999999873111 111 233332 222 0 1 123
Q ss_pred HHHHHHHHHHhc-CCceEEEEecCCCC
Q 039134 104 QGRAEEIFQRLS-QRRFALLLDDLRGP 129 (339)
Q Consensus 104 ~~~~~~l~~~l~-~k~~LlvlDdv~~~ 129 (339)
+..+..+.+.++ .++.+|++|+++..
T Consensus 260 e~~l~~i~~~~~~~~~~ILfiDEih~l 286 (731)
T TIGR02639 260 EERLKAVVSEIEKEPNAILFIDEIHTI 286 (731)
T ss_pred HHHHHHHHHHHhccCCeEEEEecHHHH
Confidence 344555555543 46899999998633
No 74
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=8.5e-06 Score=81.22 Aligned_cols=176 Identities=15% Similarity=0.108 Sum_probs=102.1
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc--CCc-----------------ce
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR--HNF-----------------YL 91 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~f-----------------~~ 91 (339)
++.+-..+||.+..++.|..++..+.-...++++|+.|+||||+|+.+++.+.-.. ... ..
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe
Confidence 34445567999999999999998874457789999999999999999998763000 000 01
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccccCC---CCCCceEEE-eCCChHHHhh-cC
Q 039134 92 VILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEAGVP---DQNGSKIVF-TTIMEDACNT-MG 159 (339)
Q Consensus 92 ~~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l~~~---~~~~~~ilv-TsR~~~~~~~-~~ 159 (339)
++.+........++. ..+.+.+ .+++-++|+|+++.... .+.+... ....+.+|+ |+....+... ..
T Consensus 91 ~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~S 169 (585)
T PRK14950 91 VIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILS 169 (585)
T ss_pred EEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHh
Confidence 222222222333333 2333333 24567899999976532 3333111 223444444 4443333221 12
Q ss_pred CCceEEecCCCCcc-----Cc---cCCChhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039134 160 DQIKFKVDYLRRDD-----DV---LNFHPDILELAETVADLCRGLPLAHITIGRAM 207 (339)
Q Consensus 160 ~~~~~~l~~L~~~~-----~~---~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L 207 (339)
....+.+.+++..+ .. ........+.+..+++.++|.+..+......|
T Consensus 170 R~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL 225 (585)
T PRK14950 170 RCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQL 225 (585)
T ss_pred ccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 23567777777766 11 11112335678889999999887655544433
No 75
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=1.1e-05 Score=77.83 Aligned_cols=170 Identities=14% Similarity=0.139 Sum_probs=100.1
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc--------------------cCCcce
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT--------------------RHNFYL 91 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------~~~f~~ 91 (339)
|.+-..++|.+..++.+...+..+.-...++++|++|+||||+|+.+++.+.-. ..+++
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 344456799999999999999887445789999999999999999998876311 01122
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc---cCCCCCCceEEEeC-CChHHHhh-cC
Q 039134 92 VILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA---GVPDQNGSKIVFTT-IMEDACNT-MG 159 (339)
Q Consensus 92 ~~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l---~~~~~~~~~ilvTs-R~~~~~~~-~~ 159 (339)
..++........++.. .+.+.+ .+.+-++|+|+++.... .+.+ .......+.+|++| +...+... ..
T Consensus 92 ~~~i~g~~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~s 170 (451)
T PRK06305 92 VLEIDGASHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILS 170 (451)
T ss_pred eEEeeccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHH
Confidence 2222211222233322 222222 35677899999975532 2222 11122344455444 33332221 22
Q ss_pred CCceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChH-HHHHH
Q 039134 160 DQIKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPL-AHITI 203 (339)
Q Consensus 160 ~~~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Pl-al~~~ 203 (339)
....+++.++++++ .. .....-..+.+..+++.++|.+. ++..+
T Consensus 171 Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 171 RCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34678899998888 11 11223446778889999999764 44443
No 76
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=1.2e-05 Score=78.37 Aligned_cols=174 Identities=14% Similarity=0.093 Sum_probs=103.5
Q ss_pred cccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc-CC----------------cc-e
Q 039134 30 DKVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR-HN----------------FY-L 91 (339)
Q Consensus 30 ~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~----------------f~-~ 91 (339)
.+|.+-..++|-+...+.|...+..+.-..+++++|+.|+||||+|+.+++...-.. .. +. .
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 344455667999999999999998874556789999999999999999888762110 00 11 1
Q ss_pred EEEEEecCCCCHHHHHHHHHHH----hcCCceEEEEecCCCCCC--ccccc---CCCCCCceEEEeCCCh-HHH-hhcCC
Q 039134 92 VILVKAVDNKNQQGRAEEIFQR----LSQRRFALLLDDLRGPIN--LDEAG---VPDQNGSKIVFTTIME-DAC-NTMGD 160 (339)
Q Consensus 92 ~~wv~~~~~~~~~~~~~~l~~~----l~~k~~LlvlDdv~~~~~--l~~l~---~~~~~~~~ilvTsR~~-~~~-~~~~~ 160 (339)
++.+........++..+.+... ..+++-++|+|+++.... .+.+. ......+.+|++|.+. .+. .....
T Consensus 88 v~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR 167 (535)
T PRK08451 88 IIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR 167 (535)
T ss_pred EEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh
Confidence 2333222222344444433221 124566899999976643 22221 1123345555544443 221 11223
Q ss_pred CceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 161 QIKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 161 ~~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
...+++.+++.++ .. .....-..+.+..+++.++|.+.-+..+
T Consensus 168 c~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 168 TQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 4678999999888 11 1112234677888999999988555444
No 77
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.4e-05 Score=79.01 Aligned_cols=172 Identities=16% Similarity=0.116 Sum_probs=102.8
Q ss_pred ccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc-------------------cCCcce
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT-------------------RHNFYL 91 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------------~~~f~~ 91 (339)
+|.+-..++|-+..++.|..++..+.-...++++|+.|+||||+|+.+++.+.-. ..+++
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d- 89 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD- 89 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-
Confidence 3444456799999999999999987556789999999999999999999887311 01222
Q ss_pred EEEEEecCCCCHHHHHHHHHH----HhcCCceEEEEecCCCCCC--cccccCC---CCCCceEEE-eCCChHHHhh-cCC
Q 039134 92 VILVKAVDNKNQQGRAEEIFQ----RLSQRRFALLLDDLRGPIN--LDEAGVP---DQNGSKIVF-TTIMEDACNT-MGD 160 (339)
Q Consensus 92 ~~wv~~~~~~~~~~~~~~l~~----~l~~k~~LlvlDdv~~~~~--l~~l~~~---~~~~~~ilv-TsR~~~~~~~-~~~ 160 (339)
+.++........++....... -..+++-++|+|+++.... ++.+... ....+.+|+ |+....+... ...
T Consensus 90 v~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SR 169 (563)
T PRK06647 90 VIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSR 169 (563)
T ss_pred eEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHh
Confidence 233322122334443332211 1235677899999976643 3333111 223444444 5443333221 223
Q ss_pred CceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 161 QIKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 161 ~~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
...+++.+++.++ .. ....+-.++.+..|++.++|.+..+..+
T Consensus 170 c~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 170 CQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4568888888877 11 1122334677788999999987544433
No 78
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.6e-05 Score=78.67 Aligned_cols=168 Identities=15% Similarity=0.106 Sum_probs=99.5
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc-------------------CCcceE
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR-------------------HNFYLV 92 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~ 92 (339)
|.+-..++|.+...+.+.+++..+.-...++++|+.|+|||++|+.++..+.-.. .+++ +
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v 90 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-V 90 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-e
Confidence 4445567999999999999999875567889999999999999999988763110 1222 3
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc----cCCCCCCceEEEeCCChHHHhh-cCC
Q 039134 93 ILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVFTTIMEDACNT-MGD 160 (339)
Q Consensus 93 ~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilvTsR~~~~~~~-~~~ 160 (339)
+.+........+.. ..+.... .++.-++|+|+++.... +..+ ..|..+-..|+.|+....+... ...
T Consensus 91 ~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR 169 (559)
T PRK05563 91 IEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSR 169 (559)
T ss_pred EEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH
Confidence 33333222333322 2333332 35667889999976643 3333 1222333344455554333221 122
Q ss_pred CceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCChHHHH
Q 039134 161 QIKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 161 ~~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~Plal~ 201 (339)
...+++.+++.++ .. ........+.+..+++.++|.+..+.
T Consensus 170 c~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 170 CQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred heEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 3567788887766 11 11112335667788889988775443
No 79
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.32 E-value=1.4e-06 Score=81.89 Aligned_cols=90 Identities=23% Similarity=0.293 Sum_probs=55.9
Q ss_pred cccchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec-C-CCC
Q 039134 37 VKKGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV-D-NKN 102 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~-~~~ 102 (339)
.+.|++..+++|.+.+... ..++.++|+|++|+|||++|+.+++... ..|-.+...... . ...
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~---~~~~~v~~~~l~~~~~g~ 199 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---ATFIRVVGSELVRKYIGE 199 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC---CCEEecchHHHHHHhhhH
Confidence 4699999999999887431 2356799999999999999999999873 333211100000 0 001
Q ss_pred HHHHHHHHHHHh-cCCceEEEEecCCCC
Q 039134 103 QQGRAEEIFQRL-SQRRFALLLDDLRGP 129 (339)
Q Consensus 103 ~~~~~~~l~~~l-~~k~~LlvlDdv~~~ 129 (339)
.......+.+.. ...+.+|++|+++..
T Consensus 200 ~~~~i~~~f~~a~~~~p~il~iDEiD~l 227 (364)
T TIGR01242 200 GARLVREIFELAKEKAPSIIFIDEIDAI 227 (364)
T ss_pred HHHHHHHHHHHHHhcCCcEEEhhhhhhh
Confidence 111222233322 346789999998653
No 80
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.30 E-value=3.7e-06 Score=77.50 Aligned_cols=116 Identities=9% Similarity=0.021 Sum_probs=72.9
Q ss_pred cccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHH
Q 039134 30 DKVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEE 109 (339)
Q Consensus 30 ~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 109 (339)
.+|.+...++|.+...+.+..++..+..+..++++|++|+|||++|+.+++... .. ...+.... ...+.....
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~---~~---~~~i~~~~-~~~~~i~~~ 87 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG---AE---VLFVNGSD-CRIDFVRNR 87 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC---cc---ceEeccCc-ccHHHHHHH
Confidence 334455677999999999999998874567888899999999999999998762 22 22333333 122222222
Q ss_pred HHHHh-----cCCceEEEEecCCCCC--Cc-ccc---cCCCCCCceEEEeCCCh
Q 039134 110 IFQRL-----SQRRFALLLDDLRGPI--NL-DEA---GVPDQNGSKIVFTTIME 152 (339)
Q Consensus 110 l~~~l-----~~k~~LlvlDdv~~~~--~l-~~l---~~~~~~~~~ilvTsR~~ 152 (339)
+.+.. .+.+-++|+|+++... .. ..+ ......++.+|+||...
T Consensus 88 l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 88 LTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred HHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 32222 2356789999997552 11 111 11134567788888654
No 81
>PTZ00202 tuzin; Provisional
Probab=98.29 E-value=7.9e-06 Score=76.65 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=46.4
Q ss_pred cccccCccccccchhHHHHHHHHHhhcC--CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 28 LKDKVDTLSVKKGMESILDEVWECFEDD--FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 28 ~~~~~~~~~~~vGR~~~~~~l~~~l~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....++..+.|+||+.++.+|...|... ..++++.|+|++|+|||||++.+....
T Consensus 254 ~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 254 LQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred ccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3445666789999999999999999752 345699999999999999999999876
No 82
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.26 E-value=5.3e-06 Score=78.60 Aligned_cols=87 Identities=24% Similarity=0.313 Sum_probs=56.7
Q ss_pred cccchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC-----
Q 039134 37 VKKGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD----- 99 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~----- 99 (339)
.+.|++..+++|.+.+.-. ..++.++|+|++|+|||++|+.+++... ..| +.+..+.
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~---~~~---i~v~~~~l~~~~ 205 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---ATF---IRVVGSELVQKF 205 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC---CCE---EEeehHHHhHhh
Confidence 4579999999999876421 3467799999999999999999999873 222 1111111
Q ss_pred CCCHHHHHHHHHHHh-cCCceEEEEecCCCC
Q 039134 100 NKNQQGRAEEIFQRL-SQRRFALLLDDLRGP 129 (339)
Q Consensus 100 ~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~ 129 (339)
..........+++.. ...+.+|+||+++..
T Consensus 206 ~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l 236 (389)
T PRK03992 206 IGEGARLVRELFELAREKAPSIIFIDEIDAI 236 (389)
T ss_pred ccchHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 001122333333333 346789999999653
No 83
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.4e-05 Score=78.10 Aligned_cols=173 Identities=14% Similarity=0.061 Sum_probs=100.1
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc-CCc-------------------ce
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR-HNF-------------------YL 91 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~f-------------------~~ 91 (339)
+..-..++|.+..++.|..++..+.-...++++|+.|+||||+|+.+++.+.-.. ... ..
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D 91 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALD 91 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCcc
Confidence 3344567999999999999999874457899999999999999999998873110 000 01
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--ccccc----CCCCCCceEEEeCCChHHHhh-cC
Q 039134 92 VILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEAG----VPDQNGSKIVFTTIMEDACNT-MG 159 (339)
Q Consensus 92 ~~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l~----~~~~~~~~ilvTsR~~~~~~~-~~ 159 (339)
++.+........+...+ +...+ .+++-++|+|+++.... .+.+. .+...-..|++|+....+... ..
T Consensus 92 ~~ei~~~~~~~vd~IRe-ii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrS 170 (620)
T PRK14948 92 VIEIDAASNTGVDNIRE-LIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIIS 170 (620)
T ss_pred EEEEeccccCCHHHHHH-HHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHh
Confidence 22222212233333333 22322 24566899999986643 33331 112222334455543333221 22
Q ss_pred CCceEEecCCCCcc--C---c---cCCChhHHHHHHHHHHHcCCChHHHHHHHH
Q 039134 160 DQIKFKVDYLRRDD--D---V---LNFHPDILELAETVADLCRGLPLAHITIGR 205 (339)
Q Consensus 160 ~~~~~~l~~L~~~~--~---~---~~~~~~~~~~~~~i~~~~~G~Plal~~~~~ 205 (339)
....+.+.+++.++ . . ........+.+..+++.++|.+..+..+..
T Consensus 171 Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 171 RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34567778887776 1 1 111122346688899999998865544433
No 84
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.7e-05 Score=78.73 Aligned_cols=170 Identities=15% Similarity=0.095 Sum_probs=100.2
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccC-------------------CcceE
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH-------------------NFYLV 92 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------~f~~~ 92 (339)
+.+-..+||.+..++.|...+..+.-...++++|+.|+||||+|+.+++.+.-... +.+ +
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~ 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-V 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-e
Confidence 34445679999999999999988744577899999999999999999888631110 111 2
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc----cCCCCCCceEEEeCCChHHHhh-cCC
Q 039134 93 ILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVFTTIMEDACNT-MGD 160 (339)
Q Consensus 93 ~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilvTsR~~~~~~~-~~~ 160 (339)
+.+........++. ..+...+ .++.-++|+|+++.... .+.+ -.|..+-..|++|+....+... ...
T Consensus 91 ~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SR 169 (576)
T PRK14965 91 FEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 (576)
T ss_pred eeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHh
Confidence 22222222333333 2333333 24556899999976643 2222 1223333445556555444322 223
Q ss_pred CceEEecCCCCcc--Cc------cCCChhHHHHHHHHHHHcCCCh-HHHHHH
Q 039134 161 QIKFKVDYLRRDD--DV------LNFHPDILELAETVADLCRGLP-LAHITI 203 (339)
Q Consensus 161 ~~~~~l~~L~~~~--~~------~~~~~~~~~~~~~i~~~~~G~P-lal~~~ 203 (339)
...+++.+++.++ .. .....-..+.+..+++.++|.. .++..+
T Consensus 170 c~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 170 CQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567788888777 11 1122234567778888998865 455544
No 85
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.24 E-value=2.6e-06 Score=75.65 Aligned_cols=169 Identities=17% Similarity=0.182 Sum_probs=100.4
Q ss_pred CccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcc-eEEEEEecCCCCHHHHHHHHH
Q 039134 33 DTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFY-LVILVKAVDNKNQQGRAEEIF 111 (339)
Q Consensus 33 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~ 111 (339)
.+...++|.+..+.-|.+.+... ..+..+.+||+|.|||+-|+.+++.+. -.+.|. .++-.+++......-....++
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~-~lp~~LFyGPpGTGKTStalafar~L~-~~~~~~~rvl~lnaSderGisvvr~Kik 110 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRR-ILPHYLFYGPPGTGKTSTALAFARALN-CEQLFPCRVLELNASDERGISVVREKIK 110 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhc-CCceEEeeCCCCCcHhHHHHHHHHHhc-Cccccccchhhhcccccccccchhhhhc
Confidence 33445699999999999999984 789999999999999999999999884 234444 334344441111111111111
Q ss_pred H--Hhc-------C---Cc-eEEEEecCCCCC--CcccccCC---CCCCce-EEEeCCChHHHhh-cCCCceEEecCCCC
Q 039134 112 Q--RLS-------Q---RR-FALLLDDLRGPI--NLDEAGVP---DQNGSK-IVFTTIMEDACNT-MGDQIKFKVDYLRR 171 (339)
Q Consensus 112 ~--~l~-------~---k~-~LlvlDdv~~~~--~l~~l~~~---~~~~~~-ilvTsR~~~~~~~-~~~~~~~~l~~L~~ 171 (339)
+ .+. + ++ -++|||+++.+. .|..+... ....++ |+||+--..+... ...-..+..++|.+
T Consensus 111 ~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d 190 (346)
T KOG0989|consen 111 NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKD 190 (346)
T ss_pred CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcch
Confidence 1 111 1 22 478899998764 35555221 233333 5555554332111 11224577888888
Q ss_pred cc--------CccCCChhHHHHHHHHHHHcCCCh-HHHHHH
Q 039134 172 DD--------DVLNFHPDILELAETVADLCRGLP-LAHITI 203 (339)
Q Consensus 172 ~~--------~~~~~~~~~~~~~~~i~~~~~G~P-lal~~~ 203 (339)
++ ...+.-+-..+..+.|++.++|-- -|+..+
T Consensus 191 ~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 191 EDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 77 112333445678888999999944 444443
No 86
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=7.4e-06 Score=78.78 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=87.5
Q ss_pred ccchhHHH--HHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCc-ceEEEEEecCCCC-H-----HHHHH
Q 039134 38 KKGMESIL--DEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNF-YLVILVKAVDNKN-Q-----QGRAE 108 (339)
Q Consensus 38 ~vGR~~~~--~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~-~-----~~~~~ 108 (339)
++|-.... ....+....++....+.|+|++|+|||+|++.+++... . .+. ..++|++...-.+ . .....
T Consensus 108 v~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~-~-~~~~~~v~yi~~~~f~~~~~~~~~~~~~~ 185 (440)
T PRK14088 108 VVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVV-Q-NEPDLRVMYITSEKFLNDLVDSMKEGKLN 185 (440)
T ss_pred ccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHH-H-hCCCCeEEEEEHHHHHHHHHHHHhcccHH
Confidence 36755443 23334333332345699999999999999999999873 1 112 2456665431000 0 00111
Q ss_pred HHHHHhcCCceEEEEecCCCCCC-------cccccCC-CCCCceEEEeCC-ChHHH--------hhcCCCceEEecCCCC
Q 039134 109 EIFQRLSQRRFALLLDDLRGPIN-------LDEAGVP-DQNGSKIVFTTI-MEDAC--------NTMGDQIKFKVDYLRR 171 (339)
Q Consensus 109 ~l~~~l~~k~~LlvlDdv~~~~~-------l~~l~~~-~~~~~~ilvTsR-~~~~~--------~~~~~~~~~~l~~L~~ 171 (339)
.+.+.+..+.-+|++||++.... +..+... ...+..+|+||. .+.-. ..+....++.+++.+.
T Consensus 186 ~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 186 EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 22333333466899999975421 1111111 234557888775 33221 2223345778888887
Q ss_pred cc------C--ccCCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 172 DD------D--VLNFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 172 ~~------~--~~~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
+. . ......-..+.+..|++.+.|.-..+.-+
T Consensus 266 e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 266 ETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHH
Confidence 77 1 11112233566777777777765544433
No 87
>PRK06620 hypothetical protein; Validated
Probab=98.22 E-value=1.1e-05 Score=69.99 Aligned_cols=148 Identities=9% Similarity=-0.004 Sum_probs=78.3
Q ss_pred ccccch-hH-HHHHHHHHhhcC-CC--cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHH
Q 039134 36 SVKKGM-ES-ILDEVWECFEDD-FP--MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEI 110 (339)
Q Consensus 36 ~~~vGR-~~-~~~~l~~~l~~~-~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 110 (339)
..++|- .. ....+.++.... .. .+.+.|+|++|+|||+|++.+++... . .++.... . .+
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~-----~~~~~~~-~-~~------ 80 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN---A-----YIIKDIF-F-NE------ 80 (214)
T ss_pred hhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC---C-----EEcchhh-h-ch------
Confidence 345777 22 334444443321 11 26799999999999999999887762 1 1211000 0 00
Q ss_pred HHHhcCCceEEEEecCCCCCC--cccccCC-CCCCceEEEeCCChHH-------HhhcCCCceEEecCCCCcc------C
Q 039134 111 FQRLSQRRFALLLDDLRGPIN--LDEAGVP-DQNGSKIVFTTIMEDA-------CNTMGDQIKFKVDYLRRDD------D 174 (339)
Q Consensus 111 ~~~l~~k~~LlvlDdv~~~~~--l~~l~~~-~~~~~~ilvTsR~~~~-------~~~~~~~~~~~l~~L~~~~------~ 174 (339)
... +..-+|++||++...+ +..+... ...|..+|+|++.... ...+....+++++++++++ +
T Consensus 81 -~~~-~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k 158 (214)
T PRK06620 81 -EIL-EKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFK 158 (214)
T ss_pred -hHH-hcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHH
Confidence 112 2345788999974432 2222111 3567788998875422 2233344578888887666 0
Q ss_pred cc--CCChhHHHHHHHHHHHcCCChHHHH
Q 039134 175 VL--NFHPDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 175 ~~--~~~~~~~~~~~~i~~~~~G~Plal~ 201 (339)
.. ..-.-.++..+-|++.+.|.-..+.
T Consensus 159 ~~~~~~l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 159 HFSISSVTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HHHHcCCCCCHHHHHHHHHHccCCHHHHH
Confidence 00 1112234555556666655544443
No 88
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.21 E-value=8.5e-06 Score=84.49 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=62.8
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc--CC-cc-eEEEEEecC----C---CCH
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR--HN-FY-LVILVKAVD----N---KNQ 103 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~-f~-~~~wv~~~~----~---~~~ 103 (339)
...++||+.++.++++.|... ....++++|++|+|||++|..++.+..... .. .. .++++.++. . -..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~ 255 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF 255 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcC-CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhh
Confidence 345799999999999999886 566778999999999999999999873110 00 11 233333331 1 122
Q ss_pred HHHHHHHHHHh--cCCceEEEEecCCCC
Q 039134 104 QGRAEEIFQRL--SQRRFALLLDDLRGP 129 (339)
Q Consensus 104 ~~~~~~l~~~l--~~k~~LlvlDdv~~~ 129 (339)
+..+..+.+.+ .+++.+|++|+++..
T Consensus 256 e~~lk~~~~~~~~~~~~~ILfIDEih~l 283 (857)
T PRK10865 256 EERLKGVLNDLAKQEGNVILFIDELHTM 283 (857)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecHHHh
Confidence 33444444443 256899999999654
No 89
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.20 E-value=4.3e-06 Score=66.27 Aligned_cols=63 Identities=22% Similarity=0.406 Sum_probs=40.7
Q ss_pred EEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC-----CCCHHHHHHHHHHHh-cCC-ceEEEEecCCCC
Q 039134 61 ICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD-----NKNQQGRAEEIFQRL-SQR-RFALLLDDLRGP 129 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~l~~~l-~~k-~~LlvlDdv~~~ 129 (339)
|+|+|++|+|||++|+.+++... + ..+.+.... ..+.......+.+.. ... +.+|++||++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~-~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----F-PFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----S-EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----c-ccccccccccccccccccccccccccccccccccceeeeeccchhc
Confidence 68999999999999999999982 2 234454441 112222333333333 233 899999999644
No 90
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=1.3e-05 Score=77.15 Aligned_cols=168 Identities=13% Similarity=0.096 Sum_probs=95.7
Q ss_pred ccchhHH--HHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCC--------HHHH
Q 039134 38 KKGMESI--LDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKN--------QQGR 106 (339)
Q Consensus 38 ~vGR~~~--~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~--------~~~~ 106 (339)
++|.... ......+.... .....+.|+|+.|+|||+|++.+++........ ..+++++...-.. ....
T Consensus 118 v~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~-~~v~yv~~~~f~~~~~~~l~~~~~~ 196 (450)
T PRK14087 118 VIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSD-LKVSYMSGDEFARKAVDILQKTHKE 196 (450)
T ss_pred cCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEEHHHHHHHHHHHHHHhhhH
Confidence 4677544 33333333322 234568999999999999999999976311222 2345655431000 0011
Q ss_pred HHHHHHHhcCCceEEEEecCCCCC---Cc-ccc---cCC-CCCCceEEEeCCChH-H--------HhhcCCCceEEecCC
Q 039134 107 AEEIFQRLSQRRFALLLDDLRGPI---NL-DEA---GVP-DQNGSKIVFTTIMED-A--------CNTMGDQIKFKVDYL 169 (339)
Q Consensus 107 ~~~l~~~l~~k~~LlvlDdv~~~~---~l-~~l---~~~-~~~~~~ilvTsR~~~-~--------~~~~~~~~~~~l~~L 169 (339)
...+.+.+. +.-+||+||+.... .+ +.+ ... ...+..||+|+.... . ...+....++.++++
T Consensus 197 ~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~p 275 (450)
T PRK14087 197 IEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKL 275 (450)
T ss_pred HHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCc
Confidence 222333333 34588999996543 11 122 111 344557888876432 1 233344567889999
Q ss_pred CCcc---------CccCC-ChhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039134 170 RRDD---------DVLNF-HPDILELAETVADLCRGLPLAHITIGRAM 207 (339)
Q Consensus 170 ~~~~---------~~~~~-~~~~~~~~~~i~~~~~G~Plal~~~~~~L 207 (339)
+.++ ..... ..-..+...-|++.+.|.|..+.-+...+
T Consensus 276 d~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 276 DNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9888 11111 13446788889999999998887766544
No 91
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.19 E-value=3.5e-06 Score=66.85 Aligned_cols=95 Identities=22% Similarity=0.332 Sum_probs=57.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhccc--CCcceEEEEEec--------------------CC-CCHHHHHHHHHHH
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTR--HNFYLVILVKAV--------------------DN-KNQQGRAEEIFQR 113 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~f~~~~wv~~~--------------------~~-~~~~~~~~~l~~~ 113 (339)
..+.+.|+|++|+|||++++.+++...... ..-..++|+.+. .. .+.....+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 357899999999999999999999873110 012456688776 11 2455566666666
Q ss_pred hcCCc-eEEEEecCCCC-CC--ccccc-CCCCCCceEEEeCCC
Q 039134 114 LSQRR-FALLLDDLRGP-IN--LDEAG-VPDQNGSKIVFTTIM 151 (339)
Q Consensus 114 l~~k~-~LlvlDdv~~~-~~--l~~l~-~~~~~~~~ilvTsR~ 151 (339)
+...+ .+||+|+++.. .. ++.+. .....+.++|+....
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 65544 59999999665 31 22220 114666777776654
No 92
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.16 E-value=6.5e-06 Score=72.89 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=34.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
....++|.|++|+|||||++.+++... ..+|+.++|+.+.
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI 54 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAIT--KNHPEVYLIVLLI 54 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc--cccCCeEEEEEEc
Confidence 568899999999999999999999984 3389999998855
No 93
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.15 E-value=2.5e-05 Score=81.27 Aligned_cols=92 Identities=13% Similarity=0.218 Sum_probs=61.3
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCC----cceEE-EEEecC-------CCCH
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHN----FYLVI-LVKAVD-------NKNQ 103 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~----f~~~~-wv~~~~-------~~~~ 103 (339)
..++||+.++.++.+.|... ....++|+|++|+|||++|..++++... ... ....+ .+.++. ....
T Consensus 173 ~~~igr~~ei~~~~~~l~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~ 250 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLALDMGALIAGAKYRGEF 250 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEeeHHHHhhcchhhhhH
Confidence 45799999999999999886 5567779999999999999999988631 110 12223 332221 1122
Q ss_pred HHHHHHHHHHhc--CCceEEEEecCCCC
Q 039134 104 QGRAEEIFQRLS--QRRFALLLDDLRGP 129 (339)
Q Consensus 104 ~~~~~~l~~~l~--~k~~LlvlDdv~~~ 129 (339)
+..+..+...+. +++.+|++|+++..
T Consensus 251 e~~l~~~l~~~~~~~~~~ILfIDEih~l 278 (852)
T TIGR03346 251 EERLKAVLNEVTKSEGQIILFIDELHTL 278 (852)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeccHHHh
Confidence 334444444443 46899999999644
No 94
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.15 E-value=3.2e-05 Score=76.21 Aligned_cols=166 Identities=17% Similarity=0.079 Sum_probs=88.7
Q ss_pred ccchhHHH--HHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCC--H----HHHHH
Q 039134 38 KKGMESIL--DEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKN--Q----QGRAE 108 (339)
Q Consensus 38 ~vGR~~~~--~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~--~----~~~~~ 108 (339)
++|-...+ ....+..... .....++|+|..|+|||.|++.+++...+.... ..++|++...-.+ . +....
T Consensus 291 vvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g-~~V~Yitaeef~~el~~al~~~~~~ 369 (617)
T PRK14086 291 VIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPG-TRVRYVSSEEFTNEFINSIRDGKGD 369 (617)
T ss_pred cCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeHHHHHHHHHHHHHhccHH
Confidence 35665542 2333333332 223568999999999999999999987311112 2456665431000 0 00111
Q ss_pred HHHHHhcCCceEEEEecCCCCCC---ccc----ccCC-CCCCceEEEeCCCh---------HHHhhcCCCceEEecCCCC
Q 039134 109 EIFQRLSQRRFALLLDDLRGPIN---LDE----AGVP-DQNGSKIVFTTIME---------DACNTMGDQIKFKVDYLRR 171 (339)
Q Consensus 109 ~l~~~l~~k~~LlvlDdv~~~~~---l~~----l~~~-~~~~~~ilvTsR~~---------~~~~~~~~~~~~~l~~L~~ 171 (339)
.+.+.+. +.-+|||||++.... +.. +... ...+..||+||+.. .+...+....+++|.+.+.
T Consensus 370 ~f~~~y~-~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~ 448 (617)
T PRK14086 370 SFRRRYR-EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPEL 448 (617)
T ss_pred HHHHHhh-cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCH
Confidence 2222232 235789999965422 221 1111 34456788888763 1233444566788888887
Q ss_pred cc-------C-ccCCChhHHHHHHHHHHHcCCChHHHHHHHH
Q 039134 172 DD-------D-VLNFHPDILELAETVADLCRGLPLAHITIGR 205 (339)
Q Consensus 172 ~~-------~-~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~ 205 (339)
+. . .........+.+.-|++.+.+..-.|.-+..
T Consensus 449 EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 449 ETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 77 1 1111222356666677777766555544433
No 95
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.13 E-value=4.1e-05 Score=73.12 Aligned_cols=164 Identities=18% Similarity=0.123 Sum_probs=85.3
Q ss_pred ccchhHHH--HHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCH------HHHHH
Q 039134 38 KKGMESIL--DEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQ------QGRAE 108 (339)
Q Consensus 38 ~vGR~~~~--~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~------~~~~~ 108 (339)
++|.+... ..+.++.... .....+.|+|++|+|||+|++.+++... ....-..+++++...-... .....
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSSEKFTNDFVNALRNNKME 191 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEHHHHHHHHHHHHHcCCHH
Confidence 46766653 2222322322 1245789999999999999999999874 2111124556653310000 00111
Q ss_pred HHHHHhcCCceEEEEecCCCCCC---cc-cc---cCC-CCCCceEEEeCCCh-HHH--------hhcCCCceEEecCCCC
Q 039134 109 EIFQRLSQRRFALLLDDLRGPIN---LD-EA---GVP-DQNGSKIVFTTIME-DAC--------NTMGDQIKFKVDYLRR 171 (339)
Q Consensus 109 ~l~~~l~~k~~LlvlDdv~~~~~---l~-~l---~~~-~~~~~~ilvTsR~~-~~~--------~~~~~~~~~~l~~L~~ 171 (339)
.+.+.+.. .-+|+|||++.... .. .+ ... ...+..+|+|+... ... ..+.....+.+.+.+.
T Consensus 192 ~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 192 EFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDL 270 (405)
T ss_pred HHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCH
Confidence 22233322 34889999975432 11 11 111 23456677777642 211 1222234677878777
Q ss_pred cc-------C-ccCCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 172 DD-------D-VLNFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 172 ~~-------~-~~~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
++ . ......-..+....|++.+.|....+.-+
T Consensus 271 ~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 271 ETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 66 0 01122223566777777777777655443
No 96
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.12 E-value=2.8e-05 Score=75.22 Aligned_cols=167 Identities=16% Similarity=0.078 Sum_probs=90.5
Q ss_pred ccchhHH--HHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCC--HH----HHHH
Q 039134 38 KKGMESI--LDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKN--QQ----GRAE 108 (339)
Q Consensus 38 ~vGR~~~--~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~--~~----~~~~ 108 (339)
.+|.... ......+.... .....+.|+|++|+|||+|++.+++... ....-..+++++...-.+ .. ....
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~ 203 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSEKFTNDFVNALRNNTME 203 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHHHHHHHHHHHHHcCcHH
Confidence 3676554 23333333332 2346799999999999999999999984 211122355655431100 00 0112
Q ss_pred HHHHHhcCCceEEEEecCCCCCC---c-ccc---cCC-CCCCceEEEeCCChH-H--------HhhcCCCceEEecCCCC
Q 039134 109 EIFQRLSQRRFALLLDDLRGPIN---L-DEA---GVP-DQNGSKIVFTTIMED-A--------CNTMGDQIKFKVDYLRR 171 (339)
Q Consensus 109 ~l~~~l~~k~~LlvlDdv~~~~~---l-~~l---~~~-~~~~~~ilvTsR~~~-~--------~~~~~~~~~~~l~~L~~ 171 (339)
.+.+.+. +.-+|+|||++.... . +.+ ... ...+..+|+|+.... . ...+....++++++++.
T Consensus 204 ~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~ 282 (450)
T PRK00149 204 EFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDL 282 (450)
T ss_pred HHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCH
Confidence 2333333 345899999965422 1 111 111 233455777776531 1 22333346788889888
Q ss_pred cc------C-c-cCCChhHHHHHHHHHHHcCCChHHHHHHHHH
Q 039134 172 DD------D-V-LNFHPDILELAETVADLCRGLPLAHITIGRA 206 (339)
Q Consensus 172 ~~------~-~-~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~ 206 (339)
++ . . .....-.++..+-|++.+.|....+.-+...
T Consensus 283 ~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~ 325 (450)
T PRK00149 283 ETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNR 325 (450)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHH
Confidence 77 1 1 1122334667788888888877655544333
No 97
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.3e-05 Score=77.16 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=60.8
Q ss_pred ccccchhHHHHHHHHHhhc---C--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec------
Q 039134 36 SVKKGMESILDEVWECFED---D--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------ 98 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~---~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------ 98 (339)
..+=|.+..+.++.+++.. . ..++-|++|||+|+|||.||+.++..+. +-++.++
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--------vPf~~isApeivS 261 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--------VPFLSISAPEIVS 261 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--------CceEeecchhhhc
Confidence 3457889999888887643 1 4678899999999999999999999983 3333333
Q ss_pred --CCCCHHHHHHHHHHHhcCCceEEEEecCCCC
Q 039134 99 --DNKNQQGRAEEIFQRLSQRRFALLLDDLRGP 129 (339)
Q Consensus 99 --~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~ 129 (339)
.+.+.+.+.+.+.+.-...++++++|+++..
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 2333343333333444568999999999754
No 98
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.07 E-value=4.7e-05 Score=76.21 Aligned_cols=50 Identities=26% Similarity=0.208 Sum_probs=41.8
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.+.+.++|++..+..+.+.+... ....++|+|++|+||||||+.+.+..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~-~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP-FPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 344456799999999998888765 56789999999999999999988765
No 99
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.06 E-value=1.7e-05 Score=75.20 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=63.6
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHH-----------
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQ----------- 104 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~----------- 104 (339)
..+++.+..++.+...+... +.++++|++|+|||++|+.+++... ....+..+-|+...+..+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~---~~iil~GppGtGKT~lA~~la~~l~-~~~~~~~v~~VtFHpsySYeDFI~G~rP~~v 250 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK---KNIILQGPPGVGKTFVARRLAYLLT-GEKAPQRVNMVQFHQSYSYEDFIQGYRPNGV 250 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHHHHHHHhc-CCcccceeeEEeecccccHHHHhcccCCCCC
Confidence 45688999999999999876 6788899999999999999999873 33456667777776211111
Q ss_pred ------HHH-HHHHHHh--cCCceEEEEecCCCCC
Q 039134 105 ------GRA-EEIFQRL--SQRRFALLLDDLRGPI 130 (339)
Q Consensus 105 ------~~~-~~l~~~l--~~k~~LlvlDdv~~~~ 130 (339)
..+ +.+.... .+++++||+|+++...
T Consensus 251 gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 251 GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred CeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 111 1222222 2468999999996553
No 100
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.06 E-value=1.9e-05 Score=70.70 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=35.6
Q ss_pred ccccchhHHHHHHHHHhhc--------------CCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFED--------------DFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~--------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++|.+...++|.+.... .+....++++|++|+||||+|+.+++.+
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578988888777644211 1345678999999999999999999876
No 101
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.04 E-value=8.9e-06 Score=75.64 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=39.4
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 47 EVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 47 ~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
++++.+..=...+..+|+|++|+||||||+.+++... ..+|+.++|+.+.
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLI 207 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLI 207 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEe
Confidence 4444444423568889999999999999999999984 3389999999877
No 102
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.03 E-value=1.7e-05 Score=82.14 Aligned_cols=91 Identities=18% Similarity=0.300 Sum_probs=61.0
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc--CCc-ceEEEE-Eec---C-CC---CHH
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR--HNF-YLVILV-KAV---D-NK---NQQ 104 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~f-~~~~wv-~~~---~-~~---~~~ 104 (339)
..++||+++++++.+.|... ..+-++|+|++|+|||++|..++....... ... ...+|. +.. . .. ..+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~-~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e 257 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR-TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFE 257 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc-ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHH
Confidence 45699999999999999886 556678999999999999999998863111 011 233443 222 1 11 123
Q ss_pred HHHHHHHHHhc-CCceEEEEecCC
Q 039134 105 GRAEEIFQRLS-QRRFALLLDDLR 127 (339)
Q Consensus 105 ~~~~~l~~~l~-~k~~LlvlDdv~ 127 (339)
..+..+.+.+. .++.+|++|+++
T Consensus 258 ~rl~~i~~~~~~~~~~ILfiDEih 281 (821)
T CHL00095 258 ERLKRIFDEIQENNNIILVIDEVH 281 (821)
T ss_pred HHHHHHHHHHHhcCCeEEEEecHH
Confidence 34444444443 467999999985
No 103
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.00015 Score=66.71 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=99.7
Q ss_pred cccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc------------cCCcceEEEEEec---CC-
Q 039134 37 VKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT------------RHNFYLVILVKAV---DN- 100 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------------~~~f~~~~wv~~~---~~- 100 (339)
.++|.+...+.+...+..+.-...++++|+.|+||+++|..+++...-. ........|+.-. ..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 4689999999999999987446899999999999999999998876311 1112223444321 00
Q ss_pred -------------------CCHHHHHHHHHHHhc-----CCceEEEEecCCCCCC-----ccc-ccCCCCCCceEEEeCC
Q 039134 101 -------------------KNQQGRAEEIFQRLS-----QRRFALLLDDLRGPIN-----LDE-AGVPDQNGSKIVFTTI 150 (339)
Q Consensus 101 -------------------~~~~~~~~~l~~~l~-----~k~~LlvlDdv~~~~~-----l~~-l~~~~~~~~~ilvTsR 150 (339)
...+ .++.+.+.+. +.+-++|+|+++.... +.+ +-.|. ....|++|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred ccchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECC
Confidence 1112 2334444443 5667899999976643 222 22223 4444555554
Q ss_pred ChHHHh-hcCCCceEEecCCCCcc-----CccCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 039134 151 MEDACN-TMGDQIKFKVDYLRRDD-----DVLNFHPDILELAETVADLCRGLPLAHITIG 204 (339)
Q Consensus 151 ~~~~~~-~~~~~~~~~l~~L~~~~-----~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~ 204 (339)
...+.. .......+.+.++++++ ...............++..++|.|.....+.
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHHHH
Confidence 443322 22345678999999888 1111111112224678999999997554433
No 104
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=5.6e-05 Score=70.05 Aligned_cols=136 Identities=6% Similarity=0.008 Sum_probs=79.6
Q ss_pred cccc-hhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc-------------------CCcceEEEEE
Q 039134 37 VKKG-MESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR-------------------HNFYLVILVK 96 (339)
Q Consensus 37 ~~vG-R~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~ 96 (339)
.++| -+..++.+...+..+.-...++++|+.|+|||++|..+++...-.. .+.|......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 3466 6777888888888775567889999999999999999988763110 1223222211
Q ss_pred ecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC-----cccccCCCCCCceEEEeCCCh-HHHh-hcCCCceE
Q 039134 97 AVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN-----LDEAGVPDQNGSKIVFTTIME-DACN-TMGDQIKF 164 (339)
Q Consensus 97 ~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~-----l~~l~~~~~~~~~ilvTsR~~-~~~~-~~~~~~~~ 164 (339)
.+.....++..+.+ +.+ .+.+-++|+|+++.... +.+.......++.+|++|.+. .+.. .......+
T Consensus 86 ~~~~i~id~ir~l~-~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i 164 (329)
T PRK08058 86 DGQSIKKDQIRYLK-EEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVV 164 (329)
T ss_pred ccccCCHHHHHHHH-HHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceee
Confidence 12233344443333 322 34566899999976543 222212133455555555443 3222 22345678
Q ss_pred EecCCCCcc
Q 039134 165 KVDYLRRDD 173 (339)
Q Consensus 165 ~l~~L~~~~ 173 (339)
++.+++.++
T Consensus 165 ~~~~~~~~~ 173 (329)
T PRK08058 165 EFRPLPPES 173 (329)
T ss_pred eCCCCCHHH
Confidence 899998777
No 105
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.1e-05 Score=69.60 Aligned_cols=108 Identities=20% Similarity=0.331 Sum_probs=71.5
Q ss_pred cchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC------
Q 039134 39 KGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN------ 100 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~------ 100 (339)
=|-++.+++|.+...-+ +.++-|++|||+|.|||-||++++++-. ..|+.+..+
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--------AtFIrvvgSElVqKY 225 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--------ATFIRVVGSELVQKY 225 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--------ceEEEeccHHHHHHH
Confidence 57899999999887542 5788999999999999999999999973 233433311
Q ss_pred -CCHHHHHHHHHHHhc-CCceEEEEecCCCCC--------------------Ccccc-cCCCCCCceEEEeCCChHH
Q 039134 101 -KNQQGRAEEIFQRLS-QRRFALLLDDLRGPI--------------------NLDEA-GVPDQNGSKIVFTTIMEDA 154 (339)
Q Consensus 101 -~~~~~~~~~l~~~l~-~k~~LlvlDdv~~~~--------------------~l~~l-~~~~~~~~~ilvTsR~~~~ 154 (339)
-....++..+++..+ ..+++|++|.++..- -+.++ ++....+.+||..|...+.
T Consensus 226 iGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 226 IGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred hccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 112234445555544 568999999986430 02222 2225667888876665544
No 106
>PRK08118 topology modulation protein; Reviewed
Probab=97.99 E-value=1.3e-05 Score=66.79 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=43.6
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhcCCceEEEEecC
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLSQRRFALLLDDL 126 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv 126 (339)
+.|.|+|++|+||||||+.+++...-...+|+..+|-..-...+.++....+...+++.. .|+|..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~--wVidG~ 67 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKEDE--WIIDGN 67 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcCCC--EEEeCC
Confidence 458999999999999999999998433466777776422122333444444555555544 466765
No 107
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.98 E-value=1.3e-05 Score=68.60 Aligned_cols=94 Identities=18% Similarity=0.177 Sum_probs=70.8
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHh
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRL 114 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 114 (339)
...+||-++-++++.-...++ ..+-+.|.||+|+||||-+..+++.+- -..+=++++-+..++....+-....++.+.
T Consensus 26 l~dIVGNe~tv~rl~via~~g-nmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGIDvVRn~IK~FA 103 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEG-NMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGIDVVRNKIKMFA 103 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcC-CCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccccccHHHHHHHHHHH
Confidence 345699999999998888887 889999999999999999999999884 222334666666666666665555665554
Q ss_pred c-------CCceEEEEecCCCCC
Q 039134 115 S-------QRRFALLLDDLRGPI 130 (339)
Q Consensus 115 ~-------~k~~LlvlDdv~~~~ 130 (339)
+ ++.-++|||.+++..
T Consensus 104 Q~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 104 QKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred HhhccCCCCceeEEEeeccchhh
Confidence 3 455689999998764
No 108
>PRK08116 hypothetical protein; Validated
Probab=97.98 E-value=1.1e-05 Score=72.33 Aligned_cols=91 Identities=23% Similarity=0.233 Sum_probs=53.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCC---------CHHHHHHHHHHHhcCCceEEEEecCCC
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNK---------NQQGRAEEIFQRLSQRRFALLLDDLRG 128 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~---------~~~~~~~~l~~~l~~k~~LlvlDdv~~ 128 (339)
...+.|+|++|+|||.||..+++.+. .....+++++...-. +.......+.+.+.+-. ||||||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d-lLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD-LLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCC-EEEEecccC
Confidence 34689999999999999999999984 223446666543100 00011223334444333 899999942
Q ss_pred --CCCccc-----ccCC-CCCCceEEEeCCCh
Q 039134 129 --PINLDE-----AGVP-DQNGSKIVFTTIME 152 (339)
Q Consensus 129 --~~~l~~-----l~~~-~~~~~~ilvTsR~~ 152 (339)
..+|.. +... ...+..+|+||...
T Consensus 190 e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 190 ERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 333322 1111 34556788888764
No 109
>CHL00176 ftsH cell division protein; Validated
Probab=97.97 E-value=2.9e-05 Score=77.72 Aligned_cols=161 Identities=15% Similarity=0.104 Sum_probs=85.5
Q ss_pred cccchhHHHHHHHHHh---hcC--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec------C
Q 039134 37 VKKGMESILDEVWECF---EDD--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------D 99 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l---~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------~ 99 (339)
.+.|.++..+++.+.+ ... ..++-++|+|++|+|||+||+.++.... ..| +.+..+ .
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~---~p~---i~is~s~f~~~~~ 257 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE---VPF---FSISGSEFVEMFV 257 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCe---eeccHHHHHHHhh
Confidence 4588888777766654 221 2346799999999999999999998762 222 111111 1
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEecCCCCC------------C----ccccc-----CCCCCCceEEEeCCChHHHhh-
Q 039134 100 NKNQQGRAEEIFQRLSQRRFALLLDDLRGPI------------N----LDEAG-----VPDQNGSKIVFTTIMEDACNT- 157 (339)
Q Consensus 100 ~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~------------~----l~~l~-----~~~~~~~~ilvTsR~~~~~~~- 157 (339)
..........+.......+++|++|+++... . +..+. .....+..+|.||........
T Consensus 258 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~A 337 (638)
T CHL00176 258 GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAA 337 (638)
T ss_pred hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhh
Confidence 1111222222333345688999999996431 0 12221 112335556666665433221
Q ss_pred c----CCCceEEecCCCCcc-----Ccc--CCChhHHHHHHHHHHHcCC-ChHHHHHH
Q 039134 158 M----GDQIKFKVDYLRRDD-----DVL--NFHPDILELAETVADLCRG-LPLAHITI 203 (339)
Q Consensus 158 ~----~~~~~~~l~~L~~~~-----~~~--~~~~~~~~~~~~i~~~~~G-~Plal~~~ 203 (339)
. .....+.+...+.++ ... ............+++.+.| .+--|..+
T Consensus 338 LlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~l 395 (638)
T CHL00176 338 LLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANL 395 (638)
T ss_pred hhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHH
Confidence 1 123567777776666 111 1111123345667777777 44444433
No 110
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.96 E-value=2.9e-05 Score=76.01 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=52.3
Q ss_pred cccchhHHHHHHHHHhh---c--------CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec------C
Q 039134 37 VKKGMESILDEVWECFE---D--------DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------D 99 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~---~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------~ 99 (339)
.++|-+...+++.+.+. . ...++-++|+|++|+|||+||+.++.... ..| +.++.+ .
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~---~~~---~~i~~~~~~~~~~ 129 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG---VPF---FSISGSDFVEMFV 129 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC---CCe---eeccHHHHHHHHh
Confidence 35888887776665543 1 12446799999999999999999998762 222 111111 1
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEecCCC
Q 039134 100 NKNQQGRAEEIFQRLSQRRFALLLDDLRG 128 (339)
Q Consensus 100 ~~~~~~~~~~l~~~l~~k~~LlvlDdv~~ 128 (339)
..........+.......+.+|+||+++.
T Consensus 130 g~~~~~l~~~f~~a~~~~p~Il~iDEid~ 158 (495)
T TIGR01241 130 GVGASRVRDLFEQAKKNAPCIIFIDEIDA 158 (495)
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 11222222222233345789999999954
No 111
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.94 E-value=8.4e-05 Score=64.79 Aligned_cols=115 Identities=20% Similarity=0.269 Sum_probs=71.2
Q ss_pred cccccchhHHHHHHHHHhhc---CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHH
Q 039134 35 LSVKKGMESILDEVWECFED---DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIF 111 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 111 (339)
...++|-+.+.+.|.+.... +....-++++|..|+|||++++.+.+.+. .+ ... .+-+.-..-.+...+.+.++
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~-~~-GLR-lIev~k~~L~~l~~l~~~l~ 102 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA-DQ-GLR-LIEVSKEDLGDLPELLDLLR 102 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh-hc-Cce-EEEECHHHhccHHHHHHHHh
Confidence 44579999999998877654 34667889999999999999999999884 22 211 22221112334444444444
Q ss_pred HHhcCCceEEEEecCCCCC---Ccccc------cCC-CCCCceEEEeCCChHH
Q 039134 112 QRLSQRRFALLLDDLRGPI---NLDEA------GVP-DQNGSKIVFTTIMEDA 154 (339)
Q Consensus 112 ~~l~~k~~LlvlDdv~~~~---~l~~l------~~~-~~~~~~ilvTsR~~~~ 154 (339)
+ ...+++|++||+.-.+ ....+ ... ...+..|..||..+.+
T Consensus 103 ~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 103 D--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred c--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 2 3468999999994322 12222 111 3445556667766554
No 112
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.93 E-value=3.3e-05 Score=74.99 Aligned_cols=92 Identities=18% Similarity=0.293 Sum_probs=57.7
Q ss_pred cccchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhccc--CCcceEEEEEecCC--
Q 039134 37 VKKGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTR--HNFYLVILVKAVDN-- 100 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~f~~~~wv~~~~~-- 100 (339)
.+.|.+..+++|.+.+.-. ..++-++|+||+|+|||++|+.+++.+.... .......|+.+...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eL 262 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPEL 262 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhh
Confidence 3578999999998886421 3457799999999999999999999873110 00112334433310
Q ss_pred -----CCHHHHHHHHHHHh-----cCCceEEEEecCCC
Q 039134 101 -----KNQQGRAEEIFQRL-----SQRRFALLLDDLRG 128 (339)
Q Consensus 101 -----~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~ 128 (339)
...+.....+++.. .+++++|+||+++.
T Consensus 263 l~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~ 300 (512)
T TIGR03689 263 LNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDS 300 (512)
T ss_pred cccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhh
Confidence 01122223333332 24789999999964
No 113
>PRK12377 putative replication protein; Provisional
Probab=97.92 E-value=1.7e-05 Score=70.11 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=52.1
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCC-------HHHHHHHHHHHhcCCceEEEEecCCCC-
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKN-------QQGRAEEIFQRLSQRRFALLLDDLRGP- 129 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-------~~~~~~~l~~~l~~k~~LlvlDdv~~~- 129 (339)
...+.|+|++|+|||+||..+++.+. .....+++++...-.. .......+.+.+ .+.-||||||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l-~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL-CKVDLLVLDEIGIQR 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh-cCCCEEEEcCCCCCC
Confidence 46899999999999999999999984 2333456665441000 000111222222 35568999999432
Q ss_pred -CCcccc-cCC-----CCCCceEEEeCCCh
Q 039134 130 -INLDEA-GVP-----DQNGSKIVFTTIME 152 (339)
Q Consensus 130 -~~l~~l-~~~-----~~~~~~ilvTsR~~ 152 (339)
..|..- ... -.....+|+||...
T Consensus 177 ~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 177 ETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 333221 111 23344578887753
No 114
>PRK07261 topology modulation protein; Provisional
Probab=97.92 E-value=2.6e-05 Score=65.22 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=45.5
Q ss_pred EEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhcCCceEEEEecCC
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLSQRRFALLLDDLR 127 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~ 127 (339)
.|+|+|++|+||||||+.++....-..-+.|...|-..-...+.++....+...+.+.+ .|+|+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--wIidg~~ 67 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD--WIIDGNY 67 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCC--EEEcCcc
Confidence 48999999999999999998876322234455566433234455667777777777666 6778764
No 115
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.89 E-value=5.4e-05 Score=59.93 Aligned_cols=71 Identities=21% Similarity=0.207 Sum_probs=46.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC-------------------CCHHHHHHHHHHHhcCC-
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN-------------------KNQQGRAEEIFQRLSQR- 117 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-------------------~~~~~~~~~l~~~l~~k- 117 (339)
...+.|+|++|+||||+++.++.... .....++++..... .........+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 36789999999999999999999984 22223555544311 12222333444444444
Q ss_pred ceEEEEecCCCCCC
Q 039134 118 RFALLLDDLRGPIN 131 (339)
Q Consensus 118 ~~LlvlDdv~~~~~ 131 (339)
..++++|++.....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 49999999976644
No 116
>PRK08181 transposase; Validated
Probab=97.89 E-value=1.8e-05 Score=70.90 Aligned_cols=90 Identities=20% Similarity=0.247 Sum_probs=52.8
Q ss_pred HHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHH------------HHHhcCC
Q 039134 50 ECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEI------------FQRLSQR 117 (339)
Q Consensus 50 ~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l------------~~~l~~k 117 (339)
+|+... ..+.|+|++|+|||.||..+++... .....++|+... ++...+ .+.+ .+
T Consensus 101 ~~~~~~---~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~~------~L~~~l~~a~~~~~~~~~l~~l-~~ 167 (269)
T PRK08181 101 SWLAKG---ANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRTT------DLVQKLQVARRELQLESAIAKL-DK 167 (269)
T ss_pred HHHhcC---ceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeHH------HHHHHHHHHHhCCcHHHHHHHH-hc
Confidence 455543 5699999999999999999998874 222345665433 222222 2222 24
Q ss_pred ceEEEEecCCCCC--C-----cccccCCCCCCceEEEeCCCh
Q 039134 118 RFALLLDDLRGPI--N-----LDEAGVPDQNGSKIVFTTIME 152 (339)
Q Consensus 118 ~~LlvlDdv~~~~--~-----l~~l~~~~~~~~~ilvTsR~~ 152 (339)
.-||||||+.... . +..+......+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4599999995331 1 122211111124688888865
No 117
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00025 Score=68.32 Aligned_cols=133 Identities=19% Similarity=0.178 Sum_probs=71.0
Q ss_pred cccchhHHHH--HHHHHhhc---C--CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCC-----H-
Q 039134 37 VKKGMESILD--EVWECFED---D--FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKN-----Q- 103 (339)
Q Consensus 37 ~~vGR~~~~~--~l~~~l~~---~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-----~- 103 (339)
+++|-..... .+.++... . .....+.|+|++|+|||+|++.+++... .....+++++...-.+ .
T Consensus 113 Fv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~~~~f~~~~~~~l~ 189 (445)
T PRK12422 113 FLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVRSELFTEHLVSAIR 189 (445)
T ss_pred eeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEeeHHHHHHHHHHHHh
Confidence 3468766643 33333321 1 1236789999999999999999999873 1223355654321000 0
Q ss_pred HHHHHHHHHHhcCCceEEEEecCCCCCC----ccccc--CC--CCCCceEEEeCCCh-HH--------HhhcCCCceEEe
Q 039134 104 QGRAEEIFQRLSQRRFALLLDDLRGPIN----LDEAG--VP--DQNGSKIVFTTIME-DA--------CNTMGDQIKFKV 166 (339)
Q Consensus 104 ~~~~~~l~~~l~~k~~LlvlDdv~~~~~----l~~l~--~~--~~~~~~ilvTsR~~-~~--------~~~~~~~~~~~l 166 (339)
......++..+ .+.-+|++||+..... .+.+. +. ...+..+|+||... .. ...+.....+++
T Consensus 190 ~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l 268 (445)
T PRK12422 190 SGEMQRFRQFY-RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPL 268 (445)
T ss_pred cchHHHHHHHc-ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEec
Confidence 00111222222 2345888999965432 11111 11 23456788877542 21 222333467888
Q ss_pred cCCCCcc
Q 039134 167 DYLRRDD 173 (339)
Q Consensus 167 ~~L~~~~ 173 (339)
.+++.++
T Consensus 269 ~~pd~e~ 275 (445)
T PRK12422 269 HPLTKEG 275 (445)
T ss_pred CCCCHHH
Confidence 8887766
No 118
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.88 E-value=0.00023 Score=67.60 Aligned_cols=230 Identities=17% Similarity=0.119 Sum_probs=123.4
Q ss_pred cchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC-CCCHHHHHHHHH---HHh
Q 039134 39 KGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD-NKNQQGRAEEIF---QRL 114 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~l~---~~l 114 (339)
.-|..-+.++.+.+... .. +++|.||-++||||+++.+..... +. .+++...+ ..+.....+.+. ..-
T Consensus 20 ~~~~~~~~~l~~~~~~~-~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~l~d~~~~~~~~~ 91 (398)
T COG1373 20 IERRKLLPRLIKKLDLR-PF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIELLDLLRAYIELK 91 (398)
T ss_pred hhHHhhhHHHHhhcccC-Cc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhhHHHHHHHHHHhh
Confidence 44455556666666655 22 999999999999999977777763 22 44444332 222222222222 222
Q ss_pred cCCceEEEEecCCCCCCcccccCC---CCCCceEEEeCCChHHH-----h-hcCCCceEEecCCCCcc--CccC--CChh
Q 039134 115 SQRRFALLLDDLRGPINLDEAGVP---DQNGSKIVFTTIMEDAC-----N-TMGDQIKFKVDYLRRDD--DVLN--FHPD 181 (339)
Q Consensus 115 ~~k~~LlvlDdv~~~~~l~~l~~~---~~~~~~ilvTsR~~~~~-----~-~~~~~~~~~l~~L~~~~--~~~~--~~~~ 181 (339)
..++..++||.|.....|...... .+.. ++++|+.+.... + ..+....+.+-||+..| .... ....
T Consensus 92 ~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~~~ 170 (398)
T COG1373 92 EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIEPS 170 (398)
T ss_pred ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccchh
Confidence 236689999999999998887322 3333 788877765442 1 12445679999999888 2111 0011
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhccCCCCCCcChhHHHH----HhhcCCCcchhhHHHhHhcccCCCCcccHHHHHH
Q 039134 182 ILELAETVADLCRGLPLAHITIGRAMANTRNRMGDLILPRLK----FSYDHLSTETHKTCFSFCSLFLKNQLIRKDELVD 257 (339)
Q Consensus 182 ~~~~~~~i~~~~~G~Plal~~~~~~L~~~~~~~~~~~~~~l~----~~~~~L~~~~~k~~~~~la~f~~~~~i~~~~li~ 257 (339)
.....-.-+-.+||+|.++..-...-. ...-+..++. ..+...+.+.+++.+.+++-. .+..++.+.+..
T Consensus 171 ~~~~~f~~Yl~~GGfP~~v~~~~~~~~-----~~~~~~~~~~~Di~~~~~~~~~~~~k~i~~~l~~~-~g~~~s~~~la~ 244 (398)
T COG1373 171 KLELLFEKYLETGGFPESVKADLSEKK-----LKEYLDTILKRDIIERGKIENADLMKRILRFLASN-IGSPISYSSLAR 244 (398)
T ss_pred HHHHHHHHHHHhCCCcHHHhCcchhhH-----HHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHhh-cCCccCHHHHHH
Confidence 112234455678999988765322111 0000001111 001001111344444444443 234566666665
Q ss_pred HHHHcCCCccCCchhhHHHHHHHHHHHHHhCCceeee
Q 039134 258 LWIGEGLFRGSHNIVVARMQGKCIIDSLIGVCLLEEV 294 (339)
Q Consensus 258 ~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~ 294 (339)
.+- + ........+++-|.+.-++...
T Consensus 245 ~l~--~---------is~~Ti~~Yl~~le~~fll~~~ 270 (398)
T COG1373 245 ELK--G---------ISKDTIRKYLSYLEDAFLLFLV 270 (398)
T ss_pred HHh--c---------cchHHHHHHHHHHHHhhheEEe
Confidence 441 0 1134566777777777777643
No 119
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00021 Score=65.52 Aligned_cols=160 Identities=13% Similarity=0.054 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc---------------CCcceEEEEEecC---C----
Q 039134 43 SILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR---------------HNFYLVILVKAVD---N---- 100 (339)
Q Consensus 43 ~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---------------~~f~~~~wv~~~~---~---- 100 (339)
...+.+...+..+.-...++++|+.|+||+++|..+++...-.. +...-..|+...+ .
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~ 90 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLR 90 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccccc
Confidence 34566777777764567899999999999999998887653100 0111233442111 1
Q ss_pred --CCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC-----cccccCCCCCCceEEEeCC-ChHHH-hhcCCCceEEe
Q 039134 101 --KNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN-----LDEAGVPDQNGSKIVFTTI-MEDAC-NTMGDQIKFKV 166 (339)
Q Consensus 101 --~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~-----l~~l~~~~~~~~~ilvTsR-~~~~~-~~~~~~~~~~l 166 (339)
...++ +..+.+.+ .++.-++|+|+++.... +.+.......++.+|++|. ...+. .....-..+.+
T Consensus 91 ~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~ 169 (319)
T PRK08769 91 TEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEF 169 (319)
T ss_pred ccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeC
Confidence 11222 23333333 24567899999976643 2222121233554554444 44333 22233466888
Q ss_pred cCCCCcc--CccCCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 167 DYLRRDD--DVLNFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 167 ~~L~~~~--~~~~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
.+++.++ ............+..++..++|.|+....+
T Consensus 170 ~~~~~~~~~~~L~~~~~~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 170 KLPPAHEALAWLLAQGVSERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CCcCHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHHH
Confidence 8888777 222111222334667899999999855443
No 120
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.88 E-value=0.00018 Score=59.55 Aligned_cols=130 Identities=16% Similarity=0.139 Sum_probs=74.7
Q ss_pred chhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc-----------------CCcceEEEEEecC---
Q 039134 40 GMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR-----------------HNFYLVILVKAVD--- 99 (339)
Q Consensus 40 GR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-----------------~~f~~~~wv~~~~--- 99 (339)
|-+...+.|...+..+.-+..++++|+.|+||+++|..+++...-.. .......|+.-..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 56777888888888874556899999999999999999988764211 1123345554332
Q ss_pred CCCHHHHHHHHHHHhc-----CCceEEEEecCCCCCC--cccc---cCCCCCCceEEEeCCChH-H-HhhcCCCceEEec
Q 039134 100 NKNQQGRAEEIFQRLS-----QRRFALLLDDLRGPIN--LDEA---GVPDQNGSKIVFTTIMED-A-CNTMGDQIKFKVD 167 (339)
Q Consensus 100 ~~~~~~~~~~l~~~l~-----~k~~LlvlDdv~~~~~--l~~l---~~~~~~~~~ilvTsR~~~-~-~~~~~~~~~~~l~ 167 (339)
....++.. .+...+. ++.=++|+||++.+.. ...+ ......++.+|++|.+.. + ......-..+.+.
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~ 159 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFR 159 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE-
T ss_pred hhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecC
Confidence 24455444 5555543 3567999999987643 2222 111345677776666543 2 2223344567676
Q ss_pred CCC
Q 039134 168 YLR 170 (339)
Q Consensus 168 ~L~ 170 (339)
+++
T Consensus 160 ~ls 162 (162)
T PF13177_consen 160 PLS 162 (162)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 121
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00044 Score=65.98 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=73.5
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--CCCCHHHHHHHHHHHh----cCCceEEEEecCCCC
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--DNKNQQGRAEEIFQRL----SQRRFALLLDDLRGP 129 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~~~~~l~~~l----~~k~~LlvlDdv~~~ 129 (339)
.+...++++|++|+|||+||..++.. ..|..+--++.. ...+.......+...+ +..-.+||+||+...
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErL 610 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERL 610 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhh
Confidence 46788999999999999999999887 467644333322 3445555555555544 445578999999776
Q ss_pred CCcccccC-----------------C-CCCCceEEEeCCChHHHhhcCC----CceEEecCCCCcc
Q 039134 130 INLDEAGV-----------------P-DQNGSKIVFTTIMEDACNTMGD----QIKFKVDYLRRDD 173 (339)
Q Consensus 130 ~~l~~l~~-----------------~-~~~~~~ilvTsR~~~~~~~~~~----~~~~~l~~L~~~~ 173 (339)
-+|-.++. | .+....|+-||....++..++- ...+.+..++..+
T Consensus 611 iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 611 LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 66544421 1 3334445557777777665542 3567787777644
No 122
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00024 Score=65.71 Aligned_cols=145 Identities=10% Similarity=0.067 Sum_probs=81.5
Q ss_pred CCCcEEEEEEeCCCchHHHHHHHHHhhhhccc-------------------CCcceEEEEEec---CCCCHHHHHHHHHH
Q 039134 55 DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR-------------------HNFYLVILVKAV---DNKNQQGRAEEIFQ 112 (339)
Q Consensus 55 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~~~---~~~~~~~~~~~l~~ 112 (339)
+.-...++++|+.|+|||++|..+++.+.-.. .|-| ..|+.-. .....++..+ +.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~id~iR~-l~~ 96 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKVDQVRE-LVS 96 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCHHHHHH-HHH
Confidence 43567899999999999999999988773110 1112 3344221 2234444443 333
Q ss_pred Hh-----cCCceEEEEecCCCCCC--cccc----cCCCCCCceEEEeCCCh-HHH-hhcCCCceEEecCCCCcc--CccC
Q 039134 113 RL-----SQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVFTTIME-DAC-NTMGDQIKFKVDYLRRDD--DVLN 177 (339)
Q Consensus 113 ~l-----~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilvTsR~~-~~~-~~~~~~~~~~l~~L~~~~--~~~~ 177 (339)
.+ .+++-++|+|+++.... .+.+ -.|. .++.+|++|.+. .+. .....-..+.+.+++.++ ....
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~ 175 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS-GDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQ 175 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCC-CCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHH
Confidence 33 24455667899976643 2222 2223 455555555554 333 222334668888888877 1111
Q ss_pred C--ChhHHHHHHHHHHHcCCChHHHHH
Q 039134 178 F--HPDILELAETVADLCRGLPLAHIT 202 (339)
Q Consensus 178 ~--~~~~~~~~~~i~~~~~G~Plal~~ 202 (339)
. .....+.+..++..++|.|.....
T Consensus 176 ~~~~~~~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 176 QALPESDERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred HhcccCChHHHHHHHHHcCCCHHHHHH
Confidence 1 122344556778999999975443
No 123
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.81 E-value=0.00019 Score=65.10 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=34.4
Q ss_pred cccchhHHHHHHHHHhhc----------C----CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 37 VKKGMESILDEVWECFED----------D----FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~----------~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.++|-+...++|.+...- + ....-++++|++|+|||++|+.+++...
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 579988888777664321 1 1223689999999999999988887763
No 124
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.81 E-value=7.5e-05 Score=69.85 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=35.4
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+....++|+|++|+|||||++.+++... .++|+..+|+.+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLI 206 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLI 206 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEc
Confidence 3568899999999999999999999874 3479999999887
No 125
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00042 Score=64.20 Aligned_cols=156 Identities=10% Similarity=-0.012 Sum_probs=91.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc-------------------cCCcceEEEEEec---CC
Q 039134 43 SILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT-------------------RHNFYLVILVKAV---DN 100 (339)
Q Consensus 43 ~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------------~~~f~~~~wv~~~---~~ 100 (339)
...+++.+.+..+.-...++++|+.|+||+++|..+++...=. ..|-| +.++.-. ..
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~ 87 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLTPEKGKSS 87 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEeccccccc
Confidence 3456777778776567899999999999999999988776310 01222 2233211 12
Q ss_pred CCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC-----ccc-ccCCCCCCceEEEeCCChHHH-hhcCCCceEEecC
Q 039134 101 KNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN-----LDE-AGVPDQNGSKIVFTTIMEDAC-NTMGDQIKFKVDY 168 (339)
Q Consensus 101 ~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~-----l~~-l~~~~~~~~~ilvTsR~~~~~-~~~~~~~~~~l~~ 168 (339)
...++..+ +.+.+ .+++-++|+|+++.+.. +.+ +-.|..+...|++|++...+. +....-..+.+.+
T Consensus 88 I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~ 166 (334)
T PRK07993 88 LGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAP 166 (334)
T ss_pred CCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCC
Confidence 33444333 33333 35667999999976643 222 223344444455555544443 2223345678888
Q ss_pred CCCcc--Ccc-CCChhHHHHHHHHHHHcCCChHHH
Q 039134 169 LRRDD--DVL-NFHPDILELAETVADLCRGLPLAH 200 (339)
Q Consensus 169 L~~~~--~~~-~~~~~~~~~~~~i~~~~~G~Plal 200 (339)
+++++ ... .......+.+..+++.++|.|...
T Consensus 167 ~~~~~~~~~L~~~~~~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 167 PPEQYALTWLSREVTMSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred CCHHHHHHHHHHccCCCHHHHHHHHHHcCCCHHHH
Confidence 88776 222 111222445778899999999633
No 126
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.79 E-value=6.8e-05 Score=76.45 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=60.8
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCC---cceEEEEEe-c----CC---CCHH
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHN---FYLVILVKA-V----DN---KNQQ 104 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~-~----~~---~~~~ 104 (339)
..++||+.++.++.+.|... ...-++|+|++|+|||++|+.+++......-. .+..+|... . .. -..+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~-~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e 264 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc-CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHH
Confidence 35699999999999998886 45666899999999999999999875321111 133444321 1 01 1233
Q ss_pred HHHHHHHHHhc-CCceEEEEecCCC
Q 039134 105 GRAEEIFQRLS-QRRFALLLDDLRG 128 (339)
Q Consensus 105 ~~~~~l~~~l~-~k~~LlvlDdv~~ 128 (339)
.....+.+.+. .++.+|++|+++.
T Consensus 265 ~rl~~l~~~l~~~~~~ILfIDEIh~ 289 (758)
T PRK11034 265 KRFKALLKQLEQDTNSILFIDEIHT 289 (758)
T ss_pred HHHHHHHHHHHhcCCCEEEeccHHH
Confidence 34444444443 4678999999964
No 127
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.79 E-value=4.8e-05 Score=74.83 Aligned_cols=69 Identities=28% Similarity=0.438 Sum_probs=53.3
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhc--------CCceEEEEecCC
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLS--------QRRFALLLDDLR 127 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~--------~k~~LlvlDdv~ 127 (339)
+..+++.++|++|.||||||+-++++. .|. ++=+.+++..+....-+.+.+.++ +++.-||+|.++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-----GYs-VvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-----GYS-VVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-----Cce-EEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEeccc
Confidence 466899999999999999999998886 454 677777777776666666655542 578889999997
Q ss_pred CCC
Q 039134 128 GPI 130 (339)
Q Consensus 128 ~~~ 130 (339)
-..
T Consensus 398 Ga~ 400 (877)
T KOG1969|consen 398 GAP 400 (877)
T ss_pred CCc
Confidence 553
No 128
>CHL00181 cbbX CbbX; Provisional
Probab=97.79 E-value=0.00041 Score=62.93 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=34.2
Q ss_pred cccchhHHHHHHHHHhhc----------C----CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 37 VKKGMESILDEVWECFED----------D----FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~----------~----~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|-+...++|.+...- + .....++++|++|+|||++|+.++...
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 578988887766554311 1 123458999999999999999998876
No 129
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00057 Score=62.86 Aligned_cols=155 Identities=9% Similarity=0.073 Sum_probs=87.4
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc-------------------CCcceEEEEEe--cCCCC
Q 039134 44 ILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR-------------------HNFYLVILVKA--VDNKN 102 (339)
Q Consensus 44 ~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~~--~~~~~ 102 (339)
..+.+...+..+.-...++++|+.|+||+++|..+++...=.. .|-| ..++.- +....
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~I~ 88 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD-FHILEPIDNKDIG 88 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEccccCCCCC
Confidence 4466777777764568999999999999999999988763100 0111 222321 12233
Q ss_pred HHHHHHHHHHHh-----cCCceEEEEecCCCCCC-----cccccCCCCCCceEEEeCC-ChHHH-hhcCCCceEEecCCC
Q 039134 103 QQGRAEEIFQRL-----SQRRFALLLDDLRGPIN-----LDEAGVPDQNGSKIVFTTI-MEDAC-NTMGDQIKFKVDYLR 170 (339)
Q Consensus 103 ~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~-----l~~l~~~~~~~~~ilvTsR-~~~~~-~~~~~~~~~~l~~L~ 170 (339)
.++.. .+.+.+ .++.-++|+|+++.+.. +.+.......++.+|++|. ...+. .....-..+.+.+++
T Consensus 89 id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~ 167 (325)
T PRK06871 89 VDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPE 167 (325)
T ss_pred HHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCC
Confidence 44333 333333 35667888999987643 2222111333444444444 44443 223334678899998
Q ss_pred Ccc--CccCC-ChhHHHHHHHHHHHcCCChHHH
Q 039134 171 RDD--DVLNF-HPDILELAETVADLCRGLPLAH 200 (339)
Q Consensus 171 ~~~--~~~~~-~~~~~~~~~~i~~~~~G~Plal 200 (339)
+++ ..... .......+...++.++|.|+..
T Consensus 168 ~~~~~~~L~~~~~~~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 168 EQQALDWLQAQSSAEISEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHcCCCHHHH
Confidence 887 11111 1112224566788999999633
No 130
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.77 E-value=7.8e-05 Score=65.81 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCC--------CHHHHHHHHHHH
Q 039134 43 SILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNK--------NQQGRAEEIFQR 113 (339)
Q Consensus 43 ~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--------~~~~~~~~l~~~ 113 (339)
..+..+.+..... .....+.++|.+|+|||+||..+++.+. ..-..++++++..-. ..+.....+.+.
T Consensus 83 ~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~ 159 (244)
T PRK07952 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIITVADIMSAMKDTFSNSETSEEQLLND 159 (244)
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3455555555432 2345899999999999999999999984 223456666554110 001112234444
Q ss_pred hcCCceEEEEecCCCC--CCccc-ccCC-----CCCCceEEEeCCCh
Q 039134 114 LSQRRFALLLDDLRGP--INLDE-AGVP-----DQNGSKIVFTTIME 152 (339)
Q Consensus 114 l~~k~~LlvlDdv~~~--~~l~~-l~~~-----~~~~~~ilvTsR~~ 152 (339)
+. +.-+|||||+... .+|.. +... -.....+|+||...
T Consensus 160 l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 160 LS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred hc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 54 4558888999543 23332 1111 22345677777753
No 131
>PRK10536 hypothetical protein; Provisional
Probab=97.76 E-value=0.00011 Score=64.85 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=37.7
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+.+|......+..++.+. ..+.+.|++|+|||+||..++.+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~---~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK---QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC---CeEEEECCCCCCHHHHHHHHHHHH
Confidence 34578888999999988765 599999999999999999988863
No 132
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.76 E-value=0.00012 Score=69.44 Aligned_cols=84 Identities=23% Similarity=0.316 Sum_probs=55.0
Q ss_pred ccchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec------C
Q 039134 38 KKGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------D 99 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------~ 99 (339)
+.|-+..+++|.+.+.-. ..++.++|+|++|+|||+||+.+++... ..| +.+..+ .
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~---~~f---i~i~~s~l~~k~~ 220 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT---ATF---IRVVGSEFVQKYL 220 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC---CCE---EEEehHHHHHHhc
Confidence 589999998888876421 3567899999999999999999999873 333 111111 1
Q ss_pred CCCHHHHHHHHHHHh-cCCceEEEEecCCC
Q 039134 100 NKNQQGRAEEIFQRL-SQRRFALLLDDLRG 128 (339)
Q Consensus 100 ~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~ 128 (339)
... ......++... ...+.+|++|+++.
T Consensus 221 ge~-~~~lr~lf~~A~~~~P~ILfIDEID~ 249 (398)
T PTZ00454 221 GEG-PRMVRDVFRLARENAPSIIFIDEVDS 249 (398)
T ss_pred chh-HHHHHHHHHHHHhcCCeEEEEECHhh
Confidence 111 12233333332 45789999999864
No 133
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.69 E-value=0.00016 Score=67.98 Aligned_cols=132 Identities=18% Similarity=0.166 Sum_probs=75.5
Q ss_pred cccchhHHHHH-HHHHhhcC--CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcc--eEEEEEecCC------CCHHH
Q 039134 37 VKKGMESILDE-VWECFEDD--FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFY--LVILVKAVDN------KNQQG 105 (339)
Q Consensus 37 ~~vGR~~~~~~-l~~~l~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~------~~~~~ 105 (339)
..+|-...... +...+.+. .....+.|+|+.|.|||.|++.+++... .... .+++++...- .-.+.
T Consensus 89 Fv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~---~~~~~a~v~y~~se~f~~~~v~a~~~~ 165 (408)
T COG0593 89 FVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEAL---ANGPNARVVYLTSEDFTNDFVKALRDN 165 (408)
T ss_pred eeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHH---hhCCCceEEeccHHHHHHHHHHHHHhh
Confidence 34666544422 22223332 2478999999999999999999999984 3333 2344322100 00111
Q ss_pred HHHHHHHHhcCCceEEEEecCCCCCC---cccccCC-----CCCCceEEEeCCCh---------HHHhhcCCCceEEecC
Q 039134 106 RAEEIFQRLSQRRFALLLDDLRGPIN---LDEAGVP-----DQNGSKIVFTTIME---------DACNTMGDQIKFKVDY 168 (339)
Q Consensus 106 ~~~~l~~~l~~k~~LlvlDdv~~~~~---l~~l~~~-----~~~~~~ilvTsR~~---------~~~~~~~~~~~~~l~~ 168 (339)
....+++.. .--++++||++.... +++..+. ...|..||+|++.. .+...++...++++.+
T Consensus 166 ~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~ 243 (408)
T COG0593 166 EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEP 243 (408)
T ss_pred hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCC
Confidence 222333333 344889999965432 2222122 44555899998753 2233445567889999
Q ss_pred CCCcc
Q 039134 169 LRRDD 173 (339)
Q Consensus 169 L~~~~ 173 (339)
++.+.
T Consensus 244 Pd~e~ 248 (408)
T COG0593 244 PDDET 248 (408)
T ss_pred CCHHH
Confidence 98777
No 134
>PHA00729 NTP-binding motif containing protein
Probab=97.66 E-value=0.00029 Score=61.03 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=46.5
Q ss_pred HHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc----------CCcceEEEEEecCCCCHHHHHHHHHHHhc
Q 039134 46 DEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR----------HNFYLVILVKAVDNKNQQGRAEEIFQRLS 115 (339)
Q Consensus 46 ~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----------~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 115 (339)
.++.+.+... +...++|+|.+|+||||||..+++.....- .....+.+ .+.+.+...+....+
T Consensus 6 k~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~f------id~~~Ll~~L~~a~~ 78 (226)
T PHA00729 6 KKIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYF------FELPDALEKIQDAID 78 (226)
T ss_pred HHHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEE------EEHHHHHHHHHHHHh
Confidence 3455556555 567899999999999999999998862000 00111222 345556666655543
Q ss_pred C--CceEEEEecC
Q 039134 116 Q--RRFALLLDDL 126 (339)
Q Consensus 116 ~--k~~LlvlDdv 126 (339)
+ +.-+||+||+
T Consensus 79 ~~~~~dlLIIDd~ 91 (226)
T PHA00729 79 NDYRIPLIIFDDA 91 (226)
T ss_pred cCCCCCEEEEeCC
Confidence 3 2248999995
No 135
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.65 E-value=0.00012 Score=62.68 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec----------------------
Q 039134 41 MESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---------------------- 98 (339)
Q Consensus 41 R~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---------------------- 98 (339)
+..+.....+.|... .++.+.|++|.|||.||...+.+. -..+.|+-++++.-.
T Consensus 5 ~~~~Q~~~~~al~~~---~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALLNN---DLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHHH----SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHHhC---CeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 344555566666644 799999999999999999988776 344788877776533
Q ss_pred -------CCCCHHHHHHHHH----------HHhcCC---ceEEEEecCCCC--CCcccccCCCCCCceEEEeCCCh
Q 039134 99 -------DNKNQQGRAEEIF----------QRLSQR---RFALLLDDLRGP--INLDEAGVPDQNGSKIVFTTIME 152 (339)
Q Consensus 99 -------~~~~~~~~~~~l~----------~~l~~k---~~LlvlDdv~~~--~~l~~l~~~~~~~~~ilvTsR~~ 152 (339)
...-.....+.+. .+++|+ ..++|+|++.+. +++..+....+.+|++|++--..
T Consensus 81 ~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~~ 156 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE---
T ss_pred HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCce
Confidence 0000011111111 112342 578999999765 45666655478899999986543
No 136
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00015 Score=65.14 Aligned_cols=70 Identities=26% Similarity=0.373 Sum_probs=48.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhccc--CCcceEEEEEec-----------CCCCHHHHHHHHHHHhcCCceE--EE
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTR--HNFYLVILVKAV-----------DNKNQQGRAEEIFQRLSQRRFA--LL 122 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~f~~~~wv~~~-----------~~~~~~~~~~~l~~~l~~k~~L--lv 122 (339)
.++|++|||||.|||+|.+.+++.+ .++ +.|.....+.+. .+.-+..+...+.+.++++..| +.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4899999999999999999999998 443 344433344433 3445566677777777776654 44
Q ss_pred EecCCC
Q 039134 123 LDDLRG 128 (339)
Q Consensus 123 lDdv~~ 128 (339)
+|.|.+
T Consensus 256 IDEVES 261 (423)
T KOG0744|consen 256 IDEVES 261 (423)
T ss_pred eHHHHH
Confidence 688843
No 137
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00015 Score=71.50 Aligned_cols=131 Identities=20% Similarity=0.262 Sum_probs=79.2
Q ss_pred cccchhHHHHHHHHHhhc-----CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCH--------
Q 039134 37 VKKGMESILDEVWECFED-----DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQ-------- 103 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~-------- 103 (339)
..+|-++..++|.+.|.- .-..++++++||+|+|||+|++.++.... ..|- -+.++.-.+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~---Rkfv---R~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG---RKFV---RISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC---CCEE---EEecCccccHHHhccccc
Confidence 459999999999999863 23558999999999999999999999985 3331 1222211111
Q ss_pred ---HHHHHHHHHH---hcCCceEEEEecCCCCCC---------cccccCC---------------CCCCceEEEeCCChH
Q 039134 104 ---QGRAEEIFQR---LSQRRFALLLDDLRGPIN---------LDEAGVP---------------DQNGSKIVFTTIMED 153 (339)
Q Consensus 104 ---~~~~~~l~~~---l~~k~~LlvlDdv~~~~~---------l~~l~~~---------------~~~~~~ilvTsR~~~ 153 (339)
..+-..+.+. .+.++-|++||.++.... +.+..-| .-+..-+|.|+.+-.
T Consensus 398 TYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~ 477 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD 477 (782)
T ss_pred cccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc
Confidence 1111222222 245788999999964311 1111111 112233344544433
Q ss_pred --HHhhcCCCceEEecCCCCcc
Q 039134 154 --ACNTMGDQIKFKVDYLRRDD 173 (339)
Q Consensus 154 --~~~~~~~~~~~~l~~L~~~~ 173 (339)
........+++++...+++|
T Consensus 478 tIP~PLlDRMEiI~lsgYt~~E 499 (782)
T COG0466 478 TIPAPLLDRMEVIRLSGYTEDE 499 (782)
T ss_pred cCChHHhcceeeeeecCCChHH
Confidence 13334566889999998888
No 138
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.61 E-value=8.6e-05 Score=68.61 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=41.7
Q ss_pred cccchhHHHHHHHHHhhc-----CCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 37 VKKGMESILDEVWECFED-----DFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.++|.++.++++.+++.. +...++++|+||+|+||||||..+++.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 579999999999999976 23568999999999999999999999983
No 139
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.61 E-value=0.0001 Score=70.46 Aligned_cols=85 Identities=24% Similarity=0.313 Sum_probs=54.9
Q ss_pred cccchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC----
Q 039134 37 VKKGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN---- 100 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~---- 100 (339)
.+.|.+..+++|.+.+.-. ..+..++|+|++|+|||++|+.+++... ..|- .+..+.-
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~---~~fi---~V~~seL~~k~ 257 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS---ATFL---RVVGSELIQKY 257 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC---CCEE---EEecchhhhhh
Confidence 3579999999998877421 2456789999999999999999999873 3332 1111110
Q ss_pred -CCHHHHHHHHHHH-hcCCceEEEEecCC
Q 039134 101 -KNQQGRAEEIFQR-LSQRRFALLLDDLR 127 (339)
Q Consensus 101 -~~~~~~~~~l~~~-l~~k~~LlvlDdv~ 127 (339)
-.....+..++.. ..+.+++|+||+++
T Consensus 258 ~Ge~~~~vr~lF~~A~~~~P~ILfIDEID 286 (438)
T PTZ00361 258 LGDGPKLVRELFRVAEENAPSIVFIDEID 286 (438)
T ss_pred cchHHHHHHHHHHHHHhCCCcEEeHHHHH
Confidence 0111222333332 24578999999985
No 140
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.60 E-value=0.00053 Score=66.64 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=51.9
Q ss_pred cccchhHHHHHHHHHhhc--------C-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec------CCC
Q 039134 37 VKKGMESILDEVWECFED--------D-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------DNK 101 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~--------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------~~~ 101 (339)
.+.|.+...+.+.+.... + ..++-++++|++|+|||.+|+.+++... -.| +-+..+ .+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~---~~~---~~l~~~~l~~~~vGe 302 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ---LPL---LRLDVGKLFGGIVGE 302 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CCE---EEEEhHHhcccccCh
Confidence 457877766666543211 1 3567899999999999999999999873 222 111111 111
Q ss_pred CHHHHHHHHHHHh-cCCceEEEEecCCC
Q 039134 102 NQQGRAEEIFQRL-SQRRFALLLDDLRG 128 (339)
Q Consensus 102 ~~~~~~~~l~~~l-~~k~~LlvlDdv~~ 128 (339)
+ +.....+.+.. ...+++|++|+++.
T Consensus 303 s-e~~l~~~f~~A~~~~P~IL~IDEID~ 329 (489)
T CHL00195 303 S-ESRMRQMIRIAEALSPCILWIDEIDK 329 (489)
T ss_pred H-HHHHHHHHHHHHhcCCcEEEehhhhh
Confidence 1 22333333332 35799999999964
No 141
>PRK06921 hypothetical protein; Provisional
Probab=97.60 E-value=5.5e-05 Score=67.84 Aligned_cols=68 Identities=26% Similarity=0.324 Sum_probs=41.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCC-HH---HHHHHHHHHhcCCceEEEEecCC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKN-QQ---GRAEEIFQRLSQRRFALLLDDLR 127 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~---~~~~~l~~~l~~k~~LlvlDdv~ 127 (339)
....+.++|++|+|||+||..+++... ......++|+....... .. .......+.+ .+--||||||+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~-~~~dlLiIDDl~ 187 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRM-KKVEVLFIDDLF 187 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHh-cCCCEEEEeccc
Confidence 357899999999999999999999874 12134466665431100 00 0011112222 245699999993
No 142
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.56 E-value=0.00014 Score=67.11 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=43.8
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--CCC---CHHHHHHHHHHHh------cCCceEEEEe
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--DNK---NQQGRAEEIFQRL------SQRRFALLLD 124 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~---~~~~~~~~l~~~l------~~k~~LlvlD 124 (339)
..+..++|||++|+|||.+|+.++.... -.| +-+..+ ... ..+..+..+++.. ++++++|++|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg---~~~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFID 219 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG---IEP---IVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIN 219 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC---CCe---EEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEe
Confidence 4678999999999999999999999983 222 222322 111 1223333333222 4689999999
Q ss_pred cCCC
Q 039134 125 DLRG 128 (339)
Q Consensus 125 dv~~ 128 (339)
+++.
T Consensus 220 EIDA 223 (413)
T PLN00020 220 DLDA 223 (413)
T ss_pred hhhh
Confidence 9863
No 143
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.55 E-value=9.4e-05 Score=68.25 Aligned_cols=85 Identities=21% Similarity=0.200 Sum_probs=51.4
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHH--------------HHHhcCCceEEEE
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEI--------------FQRLSQRRFALLL 123 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l--------------~~~l~~k~~Llvl 123 (339)
...+.|+|++|+|||+||..+++... ... ..++|++... ....+ .+.+. .-=||||
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~g-~~V~y~t~~~------l~~~l~~~~~~~~~~~~~~~~~l~-~~DLLII 252 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DRG-KSVIYRTADE------LIEILREIRFNNDKELEEVYDLLI-NCDLLII 252 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HCC-CeEEEEEHHH------HHHHHHHHHhccchhHHHHHHHhc-cCCEEEE
Confidence 37799999999999999999999884 223 3566765441 11111 12222 3358999
Q ss_pred ecCCCC--CCc-----ccccCC-CCCCceEEEeCCCh
Q 039134 124 DDLRGP--INL-----DEAGVP-DQNGSKIVFTTIME 152 (339)
Q Consensus 124 Ddv~~~--~~l-----~~l~~~-~~~~~~ilvTsR~~ 152 (339)
||+... ..| ..+... ...+..+||||...
T Consensus 253 DDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 253 DDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred eccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 999433 222 112111 23356688888753
No 144
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00019 Score=72.38 Aligned_cols=92 Identities=15% Similarity=0.254 Sum_probs=62.5
Q ss_pred ccccchhHHHHHHHHHhhcC--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---------
Q 039134 36 SVKKGMESILDEVWECFEDD--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--------- 98 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--------- 98 (339)
...+|.+..+..+.+.+... .+.+++++.||.|||||.||+.++..+. +.=+..+-++.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf---g~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc---CCCccceeechHHHHHHHHHH
Confidence 55799999999999998652 4557889999999999999999999884 322444555544
Q ss_pred ------CCCCHHHHHHHHHHHhcCCce-EEEEecCCCCC
Q 039134 99 ------DNKNQQGRAEEIFQRLSQRRF-ALLLDDLRGPI 130 (339)
Q Consensus 99 ------~~~~~~~~~~~l~~~l~~k~~-LlvlDdv~~~~ 130 (339)
++--.-+--..+.+..+.+|+ +++||.+...+
T Consensus 568 rLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAH 606 (786)
T COG0542 568 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAH 606 (786)
T ss_pred HHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcC
Confidence 000000012234455566776 77789996553
No 145
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0016 Score=59.76 Aligned_cols=157 Identities=11% Similarity=0.055 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc------------------CCcceEEEEEec---CCC
Q 039134 43 SILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR------------------HNFYLVILVKAV---DNK 101 (339)
Q Consensus 43 ~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~~---~~~ 101 (339)
...+++...+..+.-...+.++|+.|+||+++|..+++...-.. .|-| ..|+.-. ...
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I 88 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSI 88 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcC
Confidence 34466777777765667999999999999999998887653100 1222 3333321 234
Q ss_pred CHHHHHHHHHHHh-----cCCceEEEEecCCCCCC-----ccc-ccCCCCCCceEEEeCCChHHH-hhcCCCceEEecCC
Q 039134 102 NQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN-----LDE-AGVPDQNGSKIVFTTIMEDAC-NTMGDQIKFKVDYL 169 (339)
Q Consensus 102 ~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~-----l~~-l~~~~~~~~~ilvTsR~~~~~-~~~~~~~~~~l~~L 169 (339)
..++.. .+.+.+ .+..-++|+|+++.... +.+ +-.|..+...|++|+....+. +....-..+.+.++
T Consensus 89 ~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~ 167 (319)
T PRK06090 89 TVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPP 167 (319)
T ss_pred CHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCC
Confidence 445443 344443 24556899999976643 222 222333334444555544443 22334467888888
Q ss_pred CCcc--CccCCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 170 RRDD--DVLNFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 170 ~~~~--~~~~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
+.++ ...... ... ....+++.++|.|+....+
T Consensus 168 ~~~~~~~~L~~~-~~~-~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 168 STAQAMQWLKGQ-GIT-VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred CHHHHHHHHHHc-CCc-hHHHHHHHcCCCHHHHHHH
Confidence 8777 111110 011 2356789999999865543
No 146
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.55 E-value=0.0003 Score=64.58 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=47.2
Q ss_pred ccccccchhHHHHHHHHHhhcCC--CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 34 TLSVKKGMESILDEVWECFEDDF--PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 34 ~~~~~vGR~~~~~~l~~~l~~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
..|.+.+|+.++..+...+...+ -+..+.|+|-+|.|||.+.+++.+... . ..+|+++.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~---~~vw~n~~ 64 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---L---ENVWLNCV 64 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---C---cceeeehH
Confidence 35678999999999999998752 345669999999999999999999873 1 24677655
No 147
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.54 E-value=0.00024 Score=62.20 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=30.3
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+-.++|.|++|+|||+|+..+..... ..|..+++++-.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~---~~f~~I~l~t~~ 50 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLR---HKFDHIFLITPE 50 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc---ccCCEEEEEecC
Confidence 35779999999999999999998874 777766666433
No 148
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.53 E-value=7.8e-05 Score=58.25 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.8
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999986
No 149
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.52 E-value=0.00023 Score=59.86 Aligned_cols=67 Identities=34% Similarity=0.526 Sum_probs=40.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec-------CCCCHHHHHHHHHHHhcCCceEEEEecCCC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV-------DNKNQQGRAEEIFQRLSQRRFALLLDDLRG 128 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-------~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~ 128 (339)
...-+.|+|++|+|||.||..+++... ...+ .+.|+... ..... .....+.+.+. +.=||||||+-.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~-~v~f~~~~~L~~~l~~~~~~-~~~~~~~~~l~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGY-SVLFITASDLLDELKQSRSD-GSYEELLKRLK-RVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEEHHHHHHHHHCCHCC-TTHCHHHHHHH-TSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCc-ceeEeecCceeccccccccc-cchhhhcCccc-cccEecccccce
Confidence 457899999999999999999999874 2333 46666654 11100 11112223333 345888999943
No 150
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.51 E-value=0.00041 Score=71.66 Aligned_cols=47 Identities=26% Similarity=0.458 Sum_probs=38.7
Q ss_pred cccchhHHHHHHHHHhhc-----CCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 37 VKKGMESILDEVWECFED-----DFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.++|.+...++|.+++.. ....+.++++|++|+|||++|+.++....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999887642 12346899999999999999999999873
No 151
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.50 E-value=0.002 Score=58.01 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcC--CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCC---cceEEEEEecC-------------------
Q 039134 44 ILDEVWECFEDD--FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHN---FYLVILVKAVD------------------- 99 (339)
Q Consensus 44 ~~~~l~~~l~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~------------------- 99 (339)
.++++.+.+..+ .+.+.++|+|.+|+|||++++.++.......+. --.++.+....
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 345566656553 466889999999999999999999876421110 01344554441
Q ss_pred --CCCHHHHHHHHHHHhcC-CceEEEEecCCCCC-----C----cccccCC--CCCCceEEEeCCChHHHhhc-----CC
Q 039134 100 --NKNQQGRAEEIFQRLSQ-RRFALLLDDLRGPI-----N----LDEAGVP--DQNGSKIVFTTIMEDACNTM-----GD 160 (339)
Q Consensus 100 --~~~~~~~~~~l~~~l~~-k~~LlvlDdv~~~~-----~----l~~l~~~--~~~~~~ilvTsR~~~~~~~~-----~~ 160 (339)
..............++. +--+||+|.+.+.- + ++.+..- .-.-+.|.+-|++...+-.. +.
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~R 204 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASR 204 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhc
Confidence 22222223333333432 34589999996541 1 2222111 12223344445443221111 12
Q ss_pred CceEEecCCCCcc----------Cc----cCCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 161 QIKFKVDYLRRDD----------DV----LNFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 161 ~~~~~l~~L~~~~----------~~----~~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
...+.+.....++ .. ....-...+++..|+..++|+.--+..+
T Consensus 205 F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 205 FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 2456666666655 10 1111234678899999999988655543
No 152
>PRK06526 transposase; Provisional
Probab=97.50 E-value=4.2e-05 Score=68.06 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
....++|+|++|+|||+||..++....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 346789999999999999999998874
No 153
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0005 Score=68.28 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=56.7
Q ss_pred cchhHHHHHHHHHhhcC-----------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--------C
Q 039134 39 KGMESILDEVWECFEDD-----------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--------D 99 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--------~ 99 (339)
=|-++...+|.+.+.-+ .+.+-|+++||+|.|||-||++|+...+ .-|+.+. -
T Consensus 675 GGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGPELLNMYV 746 (953)
T KOG0736|consen 675 GGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGPELLNMYV 746 (953)
T ss_pred cCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCHHHHHHHh
Confidence 45677777777776541 3467899999999999999999999884 3344444 2
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEecCCCC
Q 039134 100 NKNQQGRAEEIFQRLSQRRFALLLDDLRGP 129 (339)
Q Consensus 100 ~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~ 129 (339)
+.+.+...+.+.+.=+.++|+|.||.+++.
T Consensus 747 GqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 747 GQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred cchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 233333333333333568999999999765
No 154
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.48 E-value=0.0017 Score=61.12 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHH-HHHHhhh
Q 039134 41 MESILDEVWECFEDDFPMRIICLYGVSGVGKTTLL-VNFNSKF 82 (339)
Q Consensus 41 R~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa-~~~~~~~ 82 (339)
|.+.+++|..||.+. ...+|+|+||-|+||+.|+ .++.++-
T Consensus 1 R~e~~~~L~~wL~e~-~~TFIvV~GPrGSGK~elV~d~~L~~r 42 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN-PNTFIVVQGPRGSGKRELVMDHVLKDR 42 (431)
T ss_pred CchHHHHHHHHHhcC-CCeEEEEECCCCCCccHHHHHHHHhCC
Confidence 677889999999997 6789999999999999999 6666654
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.48 E-value=0.0006 Score=70.87 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=58.1
Q ss_pred ccccchhHHHHHHHHHhhcC--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC---CCCHH
Q 039134 36 SVKKGMESILDEVWECFEDD--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD---NKNQQ 104 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~ 104 (339)
..++|.+..++.|...+... .....++++||+|+|||+||+.+++.+. ..-...+-++.+. .....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~---~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF---GSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc---CCccceEEEEchhccccccHH
Confidence 55799999999998888631 2235688999999999999999998873 2112223333221 00110
Q ss_pred H------------HHHHHHHHhcCCc-eEEEEecCCCCC
Q 039134 105 G------------RAEEIFQRLSQRR-FALLLDDLRGPI 130 (339)
Q Consensus 105 ~------------~~~~l~~~l~~k~-~LlvlDdv~~~~ 130 (339)
. ....+.+.++.++ .+++||+++...
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~ 624 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH 624 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC
Confidence 0 0123445555555 588899997653
No 156
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00041 Score=56.30 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=23.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..-++|+|++|+||||+++.+++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 45789999999999999999999884
No 157
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.00082 Score=61.90 Aligned_cols=131 Identities=12% Similarity=0.085 Sum_probs=77.4
Q ss_pred ccchhHHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccC------------------CcceEEEEEec
Q 039134 38 KKGMESILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH------------------NFYLVILVKAV 98 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~~ 98 (339)
++|-+....++..+.... .....++++||+|+||||+|..+++.+.-... ....+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 577788888888888853 23446999999999999999999998741110 12345555544
Q ss_pred CCCC---HHHHHHHHHHHhc-----CCceEEEEecCCCCCC-----cccccCCCCCCceEEEeCCCh-HHHh-hcCCCce
Q 039134 99 DNKN---QQGRAEEIFQRLS-----QRRFALLLDDLRGPIN-----LDEAGVPDQNGSKIVFTTIME-DACN-TMGDQIK 163 (339)
Q Consensus 99 ~~~~---~~~~~~~l~~~l~-----~k~~LlvlDdv~~~~~-----l~~l~~~~~~~~~ilvTsR~~-~~~~-~~~~~~~ 163 (339)
.... ..+.+..+.+... ++.-++++|+++.... +..........+.+|++|.+. .+.. .......
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~ 162 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQR 162 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhccee
Confidence 3333 2333444444332 4568999999976643 222222245556666666543 2222 1122345
Q ss_pred EEecC
Q 039134 164 FKVDY 168 (339)
Q Consensus 164 ~~l~~ 168 (339)
+++.+
T Consensus 163 i~f~~ 167 (325)
T COG0470 163 IRFKP 167 (325)
T ss_pred eecCC
Confidence 66655
No 158
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.00046 Score=60.29 Aligned_cols=87 Identities=21% Similarity=0.307 Sum_probs=57.7
Q ss_pred cccchhHHHHH---HHHHhhcC-----CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--CCCCHHHH
Q 039134 37 VKKGMESILDE---VWECFEDD-----FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--DNKNQQGR 106 (339)
Q Consensus 37 ~~vGR~~~~~~---l~~~l~~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~~ 106 (339)
..||.+....+ |++.|.++ =.++-|+.+|++|.|||.+|+.+++... -. .+.+... .+..+.+.
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k---vp---~l~vkat~liGehVGdg 195 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK---VP---LLLVKATELIGEHVGDG 195 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC---Cc---eEEechHHHHHHHhhhH
Confidence 34898877754 56666653 2568899999999999999999999872 21 1222222 23344444
Q ss_pred HHHHHHHh----cCCceEEEEecCCCC
Q 039134 107 AEEIFQRL----SQRRFALLLDDLRGP 129 (339)
Q Consensus 107 ~~~l~~~l----~~k~~LlvlDdv~~~ 129 (339)
...+++.. +..+|++.+|.++..
T Consensus 196 ar~Ihely~rA~~~aPcivFiDE~DAi 222 (368)
T COG1223 196 ARRIHELYERARKAAPCIVFIDELDAI 222 (368)
T ss_pred HHHHHHHHHHHHhcCCeEEEehhhhhh
Confidence 44444433 357899999998643
No 159
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.43 E-value=0.00043 Score=71.17 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=55.8
Q ss_pred ccchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec----C-C
Q 039134 38 KKGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV----D-N 100 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~----~-~ 100 (339)
+.|.+..+++|.+.+... ...+.++|+|++|+|||+||+.+++... ..| +.+... . .
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~---~~~---i~i~~~~i~~~~~ 253 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG---AYF---ISINGPEIMSKYY 253 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC---CeE---EEEecHHHhcccc
Confidence 689999999998877421 2457799999999999999999998872 222 222221 0 0
Q ss_pred CCHHHHHHHHHH-HhcCCceEEEEecCCC
Q 039134 101 KNQQGRAEEIFQ-RLSQRRFALLLDDLRG 128 (339)
Q Consensus 101 ~~~~~~~~~l~~-~l~~k~~LlvlDdv~~ 128 (339)
.........+++ .....+.+|++|+++.
T Consensus 254 g~~~~~l~~lf~~a~~~~p~il~iDEid~ 282 (733)
T TIGR01243 254 GESEERLREIFKEAEENAPSIIFIDEIDA 282 (733)
T ss_pred cHHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 011222333333 3345778999999854
No 160
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.42 E-value=0.0007 Score=70.35 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=39.6
Q ss_pred ccccchhHHHHHHHHHhhc--------CCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 36 SVKKGMESILDEVWECFED--------DFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..++|.+..++.+.+.+.. .....+++++||+|+|||.||+.++..+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4569999999999998853 12345799999999999999999988873
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.42 E-value=0.00084 Score=70.02 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=40.2
Q ss_pred ccccchhHHHHHHHHHhhcC--------CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 36 SVKKGMESILDEVWECFEDD--------FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..++|.+..++.+...+... ....+++++|++|+|||++|+.++....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45799999999999998752 1246789999999999999999998874
No 162
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.41 E-value=0.00038 Score=59.64 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=53.6
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec-----------------CCCCHHHHHHHHHHHhcCCceEE
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV-----------------DNKNQQGRAEEIFQRLSQRRFAL 121 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-----------------~~~~~~~~~~~l~~~l~~k~~Ll 121 (339)
+.++|.|++|+||||++..++.... ......++.... ...+.....+.++..+...+-++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~---~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~i 78 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN---KNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVI 78 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh---hcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEE
Confidence 5789999999999999998887763 111212211111 01122345556667777778899
Q ss_pred EEecCCCCCCcccccCCCCCCceEEEeCCCh
Q 039134 122 LLDDLRGPINLDEAGVPDQNGSKIVFTTIME 152 (339)
Q Consensus 122 vlDdv~~~~~l~~l~~~~~~~~~ilvTsR~~ 152 (339)
++|.+.+.+.+.........|..++.|+-..
T Consensus 79 i~gEird~e~~~~~l~~a~~G~~v~~t~Ha~ 109 (198)
T cd01131 79 LVGEMRDLETIRLALTAAETGHLVMSTLHTN 109 (198)
T ss_pred EEcCCCCHHHHHHHHHHHHcCCEEEEEecCC
Confidence 9999866554433211123344566666544
No 163
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.00063 Score=65.89 Aligned_cols=163 Identities=14% Similarity=0.096 Sum_probs=95.5
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc---CCcceEEEEEec-------------
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR---HNFYLVILVKAV------------- 98 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~------------- 98 (339)
-+.+||-+.....|...+..+.-.......|+-|+||||+|+-++..+.=.. ..+=+.|..|-.
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiD 94 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEID 94 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhh
Confidence 3456999999999999999875668899999999999999999988764111 111112222211
Q ss_pred --CCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCC--CcccccCC---CCCCce-EEEeCCChHH-HhhcCCCceE
Q 039134 99 --DNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPI--NLDEAGVP---DQNGSK-IVFTTIMEDA-CNTMGDQIKF 164 (339)
Q Consensus 99 --~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~--~l~~l~~~---~~~~~~-ilvTsR~~~~-~~~~~~~~~~ 164 (339)
....+++. +.+.+.. +++.=+.|+|.|.... .+..+.-. ...... |+.||-...+ .........+
T Consensus 95 aASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f 173 (515)
T COG2812 95 AASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRF 173 (515)
T ss_pred hhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccc
Confidence 11222222 2233322 3566789999997664 34444222 223344 4455555443 2333445678
Q ss_pred EecCCCCcc-----Cc---cCCChhHHHHHHHHHHHcCCChH
Q 039134 165 KVDYLRRDD-----DV---LNFHPDILELAETVADLCRGLPL 198 (339)
Q Consensus 165 ~l~~L~~~~-----~~---~~~~~~~~~~~~~i~~~~~G~Pl 198 (339)
.+..++.++ .. ...-....+...-|++..+|...
T Consensus 174 ~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 174 DFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLR 215 (515)
T ss_pred cccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChh
Confidence 888888887 11 11112234555666666666554
No 164
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0013 Score=66.06 Aligned_cols=83 Identities=16% Similarity=0.258 Sum_probs=54.7
Q ss_pred ccchhHHHHHH---HHHhhcC--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCC-----
Q 039134 38 KKGMESILDEV---WECFEDD--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNK----- 101 (339)
Q Consensus 38 ~vGR~~~~~~l---~~~l~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~----- 101 (339)
+.|-++..++| ++.|..+ .-++-++|+||+|+|||-||+.++-... +-|+.++.+.
T Consensus 313 VAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg--------VPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 313 VAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--------VPFFSVSGSEFVEMF 384 (774)
T ss_pred ccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC--------CceeeechHHHHHHh
Confidence 47777665554 4555553 4568899999999999999999998872 3444444110
Q ss_pred --CHHHHHHHHHHHhc-CCceEEEEecCCC
Q 039134 102 --NQQGRAEEIFQRLS-QRRFALLLDDLRG 128 (339)
Q Consensus 102 --~~~~~~~~l~~~l~-~k~~LlvlDdv~~ 128 (339)
-...++..++...+ ..++++.+|+++.
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida 414 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDA 414 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEeccccc
Confidence 11344455555443 4688999998854
No 165
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.41 E-value=0.00093 Score=68.63 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=39.0
Q ss_pred ccccchhHHHHHHHHHhhcC--------CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFEDD--------FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++|.+..++.|...+... ....+++++||+|+|||+||+.++..+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 45699999999998888741 134578999999999999999999887
No 166
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.40 E-value=0.00024 Score=57.10 Aligned_cols=103 Identities=11% Similarity=0.161 Sum_probs=59.9
Q ss_pred cchhHHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhcCC
Q 039134 39 KGMESILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLSQR 117 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~k 117 (339)
||+...++++.+.+..- .....|.|+|++|+||+++|+.+...-......|..+ .. ...+ ..+.+. .+
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~-~~~~-----~~~l~~--a~ 69 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DC-ASLP-----AELLEQ--AK 69 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CH-HCTC-----HHHHHH--CT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---ch-hhCc-----HHHHHH--cC
Confidence 57788888888887651 2457779999999999999998887753212222211 00 1111 222222 26
Q ss_pred ceEEEEecCCCCCCcc--cc---cC-CCCCCceEEEeCCCh
Q 039134 118 RFALLLDDLRGPINLD--EA---GV-PDQNGSKIVFTTIME 152 (339)
Q Consensus 118 ~~LlvlDdv~~~~~l~--~l---~~-~~~~~~~ilvTsR~~ 152 (339)
.--|+++|++....-. .+ .. ....+.++|.||..+
T Consensus 70 ~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 70 GGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 6778899998765311 11 11 135678999988764
No 167
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.40 E-value=0.00074 Score=59.01 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=36.2
Q ss_pred HHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 48 VWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 48 l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
|-+.|..+ +...++.|+|++|+|||++|.+++.... ..-..++|++..
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e 60 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE 60 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC
Confidence 44444443 4568999999999999999999998774 234567888765
No 168
>PRK06696 uridine kinase; Validated
Probab=97.39 E-value=0.00027 Score=61.77 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=37.4
Q ss_pred chhHHHHHHHHHhhc--CCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 40 GMESILDEVWECFED--DFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 40 GR~~~~~~l~~~l~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.|.+.+++|.+.+.. .+.+.+|+|.|.+|+||||||+.+++.+.
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477788888888864 24788999999999999999999999883
No 169
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.00045 Score=61.51 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=38.8
Q ss_pred cchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 39 KGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
-++...+..+......-++..-++++|++|+|||.||..+.+... +..+. +.+++..
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~s-v~f~~~~ 142 (254)
T COG1484 86 GIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL--KAGIS-VLFITAP 142 (254)
T ss_pred chhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCe-EEEEEHH
Confidence 345555555554443312568899999999999999999999994 33444 5555443
No 170
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00027 Score=69.63 Aligned_cols=48 Identities=25% Similarity=0.483 Sum_probs=42.2
Q ss_pred ccccchhHHHHHHHHHhhcC-----CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 36 SVKKGMESILDEVWECFEDD-----FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...+|.++..++|.+++.-+ .+.++++++||+|+|||++|+.+++.+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn 463 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN 463 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC
Confidence 44599999999999998642 4668999999999999999999999986
No 171
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00063 Score=65.05 Aligned_cols=83 Identities=23% Similarity=0.326 Sum_probs=53.1
Q ss_pred cchh---HHHHHHHHHhhcC--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec----CCCCH
Q 039134 39 KGME---SILDEVWECFEDD--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV----DNKNQ 103 (339)
Q Consensus 39 vGR~---~~~~~l~~~l~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~----~~~~~ 103 (339)
-|-| .|+++|+++|.++ +-++-|+++||+|.|||-||+.++-... +-|...+ +..-+
T Consensus 307 kG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~--------VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 307 KGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG--------VPFFYASGSEFDEMFV 378 (752)
T ss_pred cChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC--------CCeEeccccchhhhhh
Confidence 5555 4567778888764 3457899999999999999999998762 1111111 11111
Q ss_pred ---HHHHHHHHHHhc-CCceEEEEecCCCC
Q 039134 104 ---QGRAEEIFQRLS-QRRFALLLDDLRGP 129 (339)
Q Consensus 104 ---~~~~~~l~~~l~-~k~~LlvlDdv~~~ 129 (339)
..++..++...+ .-+|+|.+|.++..
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 223334444443 46899999998643
No 172
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.0041 Score=58.80 Aligned_cols=94 Identities=21% Similarity=0.241 Sum_probs=63.5
Q ss_pred cccccchhHHHHHHHHHhhcC---CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec-------------
Q 039134 35 LSVKKGMESILDEVWECFEDD---FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------------- 98 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------------- 98 (339)
+...+||+.++..+.+++... ...+.+-|.|-+|.|||.+...++.+....... -.++++...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 345699999999999998763 577899999999999999999999888411111 134566544
Q ss_pred --------CCCCHHHHHHHHHHHhcC--CceEEEEecCCCC
Q 039134 99 --------DNKNQQGRAEEIFQRLSQ--RRFALLLDDLRGP 129 (339)
Q Consensus 99 --------~~~~~~~~~~~l~~~l~~--k~~LlvlDdv~~~ 129 (339)
......+....+.....+ ..+|+|+|..+..
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 111113333444444433 3588899998643
No 173
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.35 E-value=0.0013 Score=57.35 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=35.3
Q ss_pred HHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCc------ceEEEEEecCC
Q 039134 48 VWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNF------YLVILVKAVDN 100 (339)
Q Consensus 48 l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f------~~~~wv~~~~~ 100 (339)
|.+.|..+ +...++.|+|++|+|||+|+.+++.... ... ..++|+.....
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~---~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQ---LPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhh---cccccCCCcceEEEEecCCC
Confidence 33444433 4568999999999999999999987753 222 45678776533
No 174
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0023 Score=55.73 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=55.5
Q ss_pred cccch-hHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCC--
Q 039134 37 VKKGM-ESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNK-- 101 (339)
Q Consensus 37 ~~vGR-~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-- 101 (339)
.+||+ +..+++|.+.+.-+ .++.-++++|++|.|||-||+.++++-. +-|+.++...
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~--------c~firvsgselv 218 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--------CTFIRVSGSELV 218 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc--------eEEEEechHHHH
Confidence 44554 77888888877532 4678899999999999999999998862 3445555211
Q ss_pred -----CHHHHHHHHHHHh-cCCceEEEEecCCCC
Q 039134 102 -----NQQGRAEEIFQRL-SQRRFALLLDDLRGP 129 (339)
Q Consensus 102 -----~~~~~~~~l~~~l-~~k~~LlvlDdv~~~ 129 (339)
....++..++-.. ..-+.+|++|.+++.
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsi 252 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 252 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeeccccc
Confidence 1111222222222 456889999998653
No 175
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.33 E-value=0.00074 Score=58.22 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=33.4
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD 99 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 99 (339)
+...++.|+|++|+|||+++.+++.... ..-..++|++...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC
Confidence 4679999999999999999999998874 3345688887653
No 176
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.32 E-value=0.00082 Score=61.52 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=63.1
Q ss_pred chhHHHHHHHHHhhcC---CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC---CC---HHHHHHHH
Q 039134 40 GMESILDEVWECFEDD---FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN---KN---QQGRAEEI 110 (339)
Q Consensus 40 GR~~~~~~l~~~l~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~---~~---~~~~~~~l 110 (339)
+|........+++..- +...-+.|+|+.|+|||.||..+++.+. ...+. +.++....- .. .+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~-v~~~~~~~l~~~lk~~~~~~~~~~~ 211 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVS-STLLHFPEFIRELKNSISDGSVKEK 211 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCC-EEEEEHHHHHHHHHHHHhcCcHHHH
Confidence 5666666666666542 2356899999999999999999999985 33444 455554300 00 00001112
Q ss_pred HHHhcCCceEEEEecCCC--CCCccc--ccCC----C-CCCceEEEeCCCh
Q 039134 111 FQRLSQRRFALLLDDLRG--PINLDE--AGVP----D-QNGSKIVFTTIME 152 (339)
Q Consensus 111 ~~~l~~k~~LlvlDdv~~--~~~l~~--l~~~----~-~~~~~ilvTsR~~ 152 (339)
.+.+ .+--||||||+.. ...|.. +... . ..+..+|+||...
T Consensus 212 l~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 212 IDAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred HHHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 2222 2456899999943 334432 2111 2 3566788888754
No 177
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00064 Score=67.03 Aligned_cols=71 Identities=25% Similarity=0.251 Sum_probs=52.7
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--CCCCHHHHHHHHHHH----hcCCceEEEEecCCC
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--DNKNQQGRAEEIFQR----LSQRRFALLLDDLRG 128 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~~~~~l~~~----l~~k~~LlvlDdv~~ 128 (339)
...+.|.|.|+.|+|||+||+.++..+. +...-.+.+++++ .....+...+.+.+. +...+.++||||++.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhh
Confidence 3568899999999999999999999985 5555555666665 344455555555544 456899999999953
No 178
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0011 Score=58.04 Aligned_cols=82 Identities=18% Similarity=0.343 Sum_probs=55.1
Q ss_pred cchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC----CC
Q 039134 39 KGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN----KN 102 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~----~~ 102 (339)
=|=.+++++|.+...-+ +.+.-|+++||+|.|||-+|+.++++-. .||+.+..+ .-
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--------acfirvigselvqky 251 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--------ACFIRVIGSELVQKY 251 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--------ceEEeehhHHHHHHH
Confidence 45567778877765432 4678899999999999999999999863 455555421 11
Q ss_pred H---HHHHHHHHHHhcC-CceEEEEecCCC
Q 039134 103 Q---QGRAEEIFQRLSQ-RRFALLLDDLRG 128 (339)
Q Consensus 103 ~---~~~~~~l~~~l~~-k~~LlvlDdv~~ 128 (339)
+ ..++..+++..+. |-|+|.+|.++.
T Consensus 252 vgegarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 252 VGEGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred hhhhHHHHHHHHHHhcccceEEEEeecccc
Confidence 2 2234445555554 558888898753
No 179
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.31 E-value=0.0012 Score=61.39 Aligned_cols=40 Identities=15% Similarity=0.015 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 44 ILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 44 ~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...++++.+..-...+.++|+|++|+|||||++.+++...
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455777776523557889999999999999999998874
No 180
>PRK09183 transposase/IS protein; Provisional
Probab=97.30 E-value=0.00029 Score=63.03 Aligned_cols=68 Identities=31% Similarity=0.335 Sum_probs=39.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCC-CH-----HHHHHHHHHHhcCCceEEEEecCCC
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNK-NQ-----QGRAEEIFQRLSQRRFALLLDDLRG 128 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~-----~~~~~~l~~~l~~k~~LlvlDdv~~ 128 (339)
...+.|+|++|+|||+||..++.... ...+ .+.++....-. .. ...........-.+.-++|+||+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~--~~G~-~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~ 175 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV--RAGI-KVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGY 175 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH--HcCC-eEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEccccc
Confidence 46788999999999999999988763 2233 34444432100 00 0001111111123556999999964
No 181
>PRK13695 putative NTPase; Provisional
Probab=97.29 E-value=0.00089 Score=56.03 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|+|++|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988776
No 182
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00097 Score=64.75 Aligned_cols=65 Identities=20% Similarity=0.331 Sum_probs=44.1
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC--------CCCHHHHHHHHHHHh-cCCceEEEEecC
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD--------NKNQQGRAEEIFQRL-SQRRFALLLDDL 126 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--------~~~~~~~~~~l~~~l-~~k~~LlvlDdv 126 (339)
..+.-|+++||+|+|||-||+.+++... -+| +.+.. +.+ +..+..++++. ...+|+|+||.+
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEag---~NF-----isVKGPELlNkYVGES-ErAVR~vFqRAR~saPCVIFFDEi 613 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEAG---ANF-----ISVKGPELLNKYVGES-ERAVRQVFQRARASAPCVIFFDEI 613 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhcc---Cce-----EeecCHHHHHHHhhhH-HHHHHHHHHHhhcCCCeEEEecch
Confidence 3568899999999999999999999873 444 33221 112 22233333333 457999999999
Q ss_pred CCC
Q 039134 127 RGP 129 (339)
Q Consensus 127 ~~~ 129 (339)
+..
T Consensus 614 DaL 616 (802)
T KOG0733|consen 614 DAL 616 (802)
T ss_pred hhc
Confidence 754
No 183
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.27 E-value=0.00039 Score=66.74 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=41.2
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++||++.++.+...+..+ .-++|.|++|+|||+||+.+....
T Consensus 19 ~~~i~gre~vI~lll~aalag---~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG---ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC---CCEEEECCCChhHHHHHHHHHHHh
Confidence 456899999999999999887 788999999999999999999876
No 184
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.25 E-value=0.0016 Score=56.63 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=35.2
Q ss_pred HHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 47 EVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 47 ~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
.|-..|..+ +...++.|+|++|+|||+++.+++.... ..-..++|++..
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e 56 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTE 56 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECC
Confidence 344445443 4678999999999999999999998873 223356777643
No 185
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.25 E-value=0.0016 Score=59.76 Aligned_cols=77 Identities=17% Similarity=0.095 Sum_probs=50.6
Q ss_pred HHHHhh-cC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---------------------CCCCHH
Q 039134 48 VWECFE-DD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---------------------DNKNQQ 104 (339)
Q Consensus 48 l~~~l~-~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---------------------~~~~~~ 104 (339)
|-..|. .+ +..+++.|+|++|+||||||.+++.... ..-..++|++.. ...+.+
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~e 119 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGE 119 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHH
Confidence 334444 33 5678999999999999999999888773 222445676543 333445
Q ss_pred HHHHHHHHHhc-CCceEEEEecCC
Q 039134 105 GRAEEIFQRLS-QRRFALLLDDLR 127 (339)
Q Consensus 105 ~~~~~l~~~l~-~k~~LlvlDdv~ 127 (339)
+....+....+ +..-++|+|.+.
T Consensus 120 q~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 120 QALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHHHHHHhhccCCcEEEEcchh
Confidence 55555544443 456789999874
No 186
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.22 E-value=0.00099 Score=60.98 Aligned_cols=115 Identities=22% Similarity=0.232 Sum_probs=71.6
Q ss_pred cccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEE-EEEec-----------------
Q 039134 37 VKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVI-LVKAV----------------- 98 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~-wv~~~----------------- 98 (339)
.+-+|..+..--.++|..+ ....|.+.|.+|.|||-||....-..--.++.|.-++ .-...
T Consensus 225 Gi~prn~eQ~~ALdlLld~-dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm 303 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDD-DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKM 303 (436)
T ss_pred ccCcccHHHHHHHHHhcCC-CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhc
Confidence 3467777777777777777 8999999999999999888765544323345554332 22111
Q ss_pred ----------------CCCCHHHHHHHHH----------HHhcCC---ceEEEEecCCCCC--CcccccCCCCCCceEEE
Q 039134 99 ----------------DNKNQQGRAEEIF----------QRLSQR---RFALLLDDLRGPI--NLDEAGVPDQNGSKIVF 147 (339)
Q Consensus 99 ----------------~~~~~~~~~~~l~----------~~l~~k---~~LlvlDdv~~~~--~l~~l~~~~~~~~~ilv 147 (339)
.....+..++.+. ++.+|+ +.++|+|.+.+.. ++..+....+.|+||++
T Consensus 304 ~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~GsKIVl 383 (436)
T COG1875 304 GPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGEGSKIVL 383 (436)
T ss_pred cchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccCCCEEEE
Confidence 1111122222221 112343 4689999998764 46666444889999999
Q ss_pred eCCCh
Q 039134 148 TTIME 152 (339)
Q Consensus 148 TsR~~ 152 (339)
|....
T Consensus 384 ~gd~a 388 (436)
T COG1875 384 TGDPA 388 (436)
T ss_pred cCCHH
Confidence 87654
No 187
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.012 Score=54.53 Aligned_cols=142 Identities=11% Similarity=0.125 Sum_probs=78.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhccc--------------------CCcceEEEEEec------------------
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTR--------------------HNFYLVILVKAV------------------ 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--------------------~~f~~~~wv~~~------------------ 98 (339)
-...++++|+.|+||+++|..+++.+.-.. .|-| ..++.-.
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD-~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPD-YRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecccccccccccccccccchh
Confidence 568999999999999999999987663110 0112 2222110
Q ss_pred -----------CCCCHHHHHHHHHHHhc-----CCceEEEEecCCCCCC------cccccCCCCCCceEEEeCCChHHH-
Q 039134 99 -----------DNKNQQGRAEEIFQRLS-----QRRFALLLDDLRGPIN------LDEAGVPDQNGSKIVFTTIMEDAC- 155 (339)
Q Consensus 99 -----------~~~~~~~~~~~l~~~l~-----~k~~LlvlDdv~~~~~------l~~l~~~~~~~~~ilvTsR~~~~~- 155 (339)
.....++. ..+.+.+. ++.-++|+|+++.... +..+-.|..+...|++|++...+.
T Consensus 99 ~~~~~k~~~~~~~I~idqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLp 177 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQV-RALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLP 177 (342)
T ss_pred hcccccccccccccCHHHH-HHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcH
Confidence 01222332 23334442 4556889999976643 222223344444566666655443
Q ss_pred hhcCCCceEEecCCCCcc--CccCCChhHHHHHHHHHHHcCCChHHHHH
Q 039134 156 NTMGDQIKFKVDYLRRDD--DVLNFHPDILELAETVADLCRGLPLAHIT 202 (339)
Q Consensus 156 ~~~~~~~~~~l~~L~~~~--~~~~~~~~~~~~~~~i~~~~~G~Plal~~ 202 (339)
........+.+.+++.++ ...... ...+ ...++..++|.|.....
T Consensus 178 TI~SRcq~i~~~~~~~~~~~~~L~~~-~~~~-~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 178 TILSRCRQFPMTVPAPEAAAAWLAAQ-GVAD-ADALLAEAGGAPLAALA 224 (342)
T ss_pred HHHhcCEEEEecCCCHHHHHHHHHHc-CCCh-HHHHHHHcCCCHHHHHH
Confidence 223344678899998877 111110 0111 23457889999974443
No 188
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.21 E-value=0.0018 Score=59.38 Aligned_cols=77 Identities=18% Similarity=0.096 Sum_probs=50.6
Q ss_pred HHHHhh-cC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---------------------CCCCHH
Q 039134 48 VWECFE-DD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---------------------DNKNQQ 104 (339)
Q Consensus 48 l~~~l~-~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---------------------~~~~~~ 104 (339)
|-..|. .+ +..+++.|+|++|+||||||.+++.... ..-..++|++.. ...+.+
T Consensus 43 LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~e 119 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGE 119 (325)
T ss_pred HHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHH
Confidence 334444 33 5678999999999999999999988763 233456777653 333444
Q ss_pred HHHHHHHHHhc-CCceEEEEecCC
Q 039134 105 GRAEEIFQRLS-QRRFALLLDDLR 127 (339)
Q Consensus 105 ~~~~~l~~~l~-~k~~LlvlDdv~ 127 (339)
+....+....+ +..-++|+|.+.
T Consensus 120 q~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 120 QALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHHHHHhccCCCEEEEcchH
Confidence 45544444333 456788888874
No 189
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.19 E-value=0.0017 Score=66.73 Aligned_cols=86 Identities=24% Similarity=0.381 Sum_probs=55.0
Q ss_pred cccchhHHHHHHHHHhhc-----------C-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC-----
Q 039134 37 VKKGMESILDEVWECFED-----------D-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD----- 99 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-----------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~----- 99 (339)
.+.|.+...++|.+.+.- + ..++.++++|++|+|||++|+.+++... ..| +.+..+.
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~---~~f---i~v~~~~l~~~~ 527 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG---ANF---IAVRGPEILSKW 527 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC---CCE---EEEehHHHhhcc
Confidence 357888888877776542 1 2456789999999999999999999873 333 2222110
Q ss_pred CCCHHHHHHHHHHHh-cCCceEEEEecCCC
Q 039134 100 NKNQQGRAEEIFQRL-SQRRFALLLDDLRG 128 (339)
Q Consensus 100 ~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~ 128 (339)
.-..+..+..++... ...+++|++|+++.
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~ 557 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDA 557 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhh
Confidence 011223334444433 45789999999864
No 190
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.18 E-value=0.0016 Score=53.10 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=26.3
Q ss_pred EEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+++|+|++|+|||+++..++.... ..-..++|+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECC
Confidence 368999999999999999988873 222345555443
No 191
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.18 E-value=0.00097 Score=55.88 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=29.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVK 96 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 96 (339)
...+|.+.|++|+||||+|+.++..+. ..+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~---~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK---LKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEe
Confidence 457999999999999999999999984 3455555553
No 192
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.17 E-value=0.002 Score=56.71 Aligned_cols=48 Identities=17% Similarity=0.065 Sum_probs=33.8
Q ss_pred HHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 48 VWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 48 l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+-+.|..+ +...++.|.|++|+|||+|+.+++.... ..-..++|+...
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e 62 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTE 62 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcC
Confidence 33444443 5679999999999999999999976642 223456666654
No 193
>PRK09354 recA recombinase A; Provisional
Probab=97.16 E-value=0.0023 Score=59.26 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=51.2
Q ss_pred HHHHhh-cC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---------------------CCCCHH
Q 039134 48 VWECFE-DD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---------------------DNKNQQ 104 (339)
Q Consensus 48 l~~~l~-~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---------------------~~~~~~ 104 (339)
|-..|. .+ +..+++.|+|++|+|||||+.+++.... ..-..++|++.. ...+.+
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~E 124 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGE 124 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHH
Confidence 334455 33 5678999999999999999999987763 223456677654 333445
Q ss_pred HHHHHHHHHhc-CCceEEEEecCC
Q 039134 105 GRAEEIFQRLS-QRRFALLLDDLR 127 (339)
Q Consensus 105 ~~~~~l~~~l~-~k~~LlvlDdv~ 127 (339)
+....+...++ +..-++|+|-+.
T Consensus 125 q~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 125 QALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHHHHHHhhcCCCCEEEEeChh
Confidence 55544444443 456788999874
No 194
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.16 E-value=0.00094 Score=59.69 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=29.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVK 96 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 96 (339)
+.+.++|.|.+|+|||+|++.++++.. .+|..++++.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~---~~~~~~~V~~ 104 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIA---KAHGGYSVFA 104 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHH---hcCCCEEEEE
Confidence 568899999999999999999999984 4455445443
No 195
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.16 E-value=0.0018 Score=54.15 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=24.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+..++.|+|++|.|||||.+.++...
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 56899999999999999999999887
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.16 E-value=0.0018 Score=57.98 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 43 SILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 43 ~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++++..++..+ ..+.|.|++|+|||+||+.+++..
T Consensus 9 ~l~~~~l~~l~~g---~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 9 RVTSRALRYLKSG---YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHhcC---CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445555656655 567899999999999999999865
No 197
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.15 E-value=0.0024 Score=50.00 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=37.8
Q ss_pred ccccchhHHHHHHHHHhhc------CCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 36 SVKKGMESILDEVWECFED------DFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..++|..-..+.|.+.+.+ ++++-|+.++|++|+|||.+++.+++.+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 4568888777776666654 25678889999999999999999999853
No 198
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.13 E-value=0.0018 Score=56.86 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=35.9
Q ss_pred HHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCC----cceEEEEEecCCCC
Q 039134 50 ECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHN----FYLVILVKAVDNKN 102 (339)
Q Consensus 50 ~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~----f~~~~wv~~~~~~~ 102 (339)
+.|..+ +...++.|+|++|+|||+|+.+++.... .... -..++|++.....+
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~-~~~~~~g~~~~viyi~~e~~~~ 66 (235)
T cd01123 10 ELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQ-LPIELGGLEGKAVYIDTEGTFR 66 (235)
T ss_pred hhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHee-CccccCCCCccEEEEeCCCCcC
Confidence 334433 4668999999999999999999986642 1111 25788888664433
No 199
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.13 E-value=0.00072 Score=67.50 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=42.7
Q ss_pred ccCccccccchhHHHHHHHHHhhcC----CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDD----FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|.....++|-++.++++..++... ....+++|+|++|+||||+++.++...
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444556799999999999998763 234679999999999999999999876
No 200
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.12 E-value=0.0027 Score=56.02 Aligned_cols=49 Identities=18% Similarity=0.040 Sum_probs=33.8
Q ss_pred HHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 47 EVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 47 ~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
.|-+.|..+ +...+++|.|++|+|||+||.+++.... ..-..++|++..
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~e 58 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALE 58 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEee
Confidence 344445544 5679999999999999999998876642 223345566543
No 201
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.11 E-value=0.00078 Score=60.63 Aligned_cols=69 Identities=32% Similarity=0.497 Sum_probs=40.2
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHh-----------cCCceEEEEecC
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRL-----------SQRRFALLLDDL 126 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l-----------~~k~~LlvlDdv 126 (339)
.+-++|+|++|+|||++++.+.+... ...| ...-+..+...........+...+ .+|++++.+||+
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~--~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDl 109 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLD--SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDL 109 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCST--TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETT
T ss_pred CCcEEEECCCCCchhHHHHhhhccCC--cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEeccc
Confidence 37779999999999999999887762 1222 122333333222222222221111 247789999999
Q ss_pred CCC
Q 039134 127 RGP 129 (339)
Q Consensus 127 ~~~ 129 (339)
...
T Consensus 110 N~p 112 (272)
T PF12775_consen 110 NMP 112 (272)
T ss_dssp T-S
T ss_pred CCC
Confidence 644
No 202
>PRK04296 thymidine kinase; Provisional
Probab=97.11 E-value=0.0017 Score=55.26 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=53.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEe--c-----------C--------CCCHHHHHHHHHHHhcCC
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKA--V-----------D--------NKNQQGRAEEIFQRLSQR 117 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~--~-----------~--------~~~~~~~~~~l~~~l~~k 117 (339)
.+++|+|+.|.||||++..++.+.. .....++.+.- . . .....+....+.. ..++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCC
Confidence 5789999999999999999998873 12222232321 1 0 1122333333333 2335
Q ss_pred ceEEEEecCCCC--CCcccccCC-CCCCceEEEeCCCh
Q 039134 118 RFALLLDDLRGP--INLDEAGVP-DQNGSKIVFTTIME 152 (339)
Q Consensus 118 ~~LlvlDdv~~~--~~l~~l~~~-~~~~~~ilvTsR~~ 152 (339)
.-++|+|.+... +++.++... ...+..+++|.++.
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~ 116 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDT 116 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 568999999644 223333222 45678899998883
No 203
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00099 Score=67.28 Aligned_cols=91 Identities=12% Similarity=0.215 Sum_probs=63.2
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCc----c--eEEEEEec-------CCCC
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNF----Y--LVILVKAV-------DNKN 102 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f----~--~~~wv~~~-------~~~~ 102 (339)
...+||+.|+.++++.|... ...--+++|++|+|||+++..++.+.. .+.. . .++-++++ -.-.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR-~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~sLD~g~LvAGakyRGe 246 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRR-TKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYSLDLGSLVAGAKYRGE 246 (786)
T ss_pred CCCcChHHHHHHHHHHHhcc-CCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEEecHHHHhccccccCc
Confidence 44599999999999999885 334446889999999999999998863 2222 1 12222222 2334
Q ss_pred HHHHHHHHHHHhc-CCceEEEEecCCCC
Q 039134 103 QQGRAEEIFQRLS-QRRFALLLDDLRGP 129 (339)
Q Consensus 103 ~~~~~~~l~~~l~-~k~~LlvlDdv~~~ 129 (339)
.+++++.+.+.++ ..+++|++|.+...
T Consensus 247 FEeRlk~vl~ev~~~~~vILFIDEiHti 274 (786)
T COG0542 247 FEERLKAVLKEVEKSKNVILFIDEIHTI 274 (786)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 5667777777665 34899999998543
No 204
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.08 E-value=0.018 Score=50.51 Aligned_cols=147 Identities=15% Similarity=0.140 Sum_probs=80.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec------------------CCCCHHHHHHHHHHHh----
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------------------DNKNQQGRAEEIFQRL---- 114 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------------------~~~~~~~~~~~l~~~l---- 114 (339)
+.+++.++|.-|+|||.+.+.+..... +.--.++.+... +..+.......+-+.|
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~---~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN---EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC---CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 467999999999999999996666552 222222333322 1122232333333332
Q ss_pred -cCCc-eEEEEecCCCC--CCcccc--cCC----CCCCceEEEeCCCh-------HHHhhcC-CCce-EEecCCCCcc--
Q 039134 115 -SQRR-FALLLDDLRGP--INLDEA--GVP----DQNGSKIVFTTIME-------DACNTMG-DQIK-FKVDYLRRDD-- 173 (339)
Q Consensus 115 -~~k~-~LlvlDdv~~~--~~l~~l--~~~----~~~~~~ilvTsR~~-------~~~~~~~-~~~~-~~l~~L~~~~-- 173 (339)
++++ ..+++|++.+. +.++.+ ... ....-+|+..-..+ ......+ .... |.+.|++.++
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~ 206 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETG 206 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHH
Confidence 4566 89999998644 333333 111 11122233322211 0111111 1123 8999999996
Q ss_pred --------CccCCChh-HHHHHHHHHHHcCCChHHHHHHHHH
Q 039134 174 --------DVLNFHPD-ILELAETVADLCRGLPLAHITIGRA 206 (339)
Q Consensus 174 --------~~~~~~~~-~~~~~~~i~~~~~G~Plal~~~~~~ 206 (339)
......+- ..+....+.....|.|.+|+.++..
T Consensus 207 ~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 207 LYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 22222222 3567788999999999999987653
No 205
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.07 E-value=0.00065 Score=66.27 Aligned_cols=45 Identities=27% Similarity=0.430 Sum_probs=40.1
Q ss_pred ccchhHHHHHHHHHhhc-----CCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 38 KKGMESILDEVWECFED-----DFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++|.++.+++|++.|.. +.+.+++.++||+|+|||+||+.+++-+
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 59999999999999933 2466899999999999999999999988
No 206
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.06 E-value=0.0016 Score=55.20 Aligned_cols=145 Identities=16% Similarity=0.102 Sum_probs=73.0
Q ss_pred EEEEEeCCCchHHHHHHHHHhhhhc-ccCCc-----------ceEEEEEecCC-------CCHHHHHHHHHHHhcC--Cc
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKFSD-TRHNF-----------YLVILVKAVDN-------KNQQGRAEEIFQRLSQ--RR 118 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~f-----------~~~~wv~~~~~-------~~~~~~~~~l~~~l~~--k~ 118 (339)
+++|+|+.|.||||+.+.++....- ..+.| +.. ....... .........+...+.. ++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~i-l~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRI-FTRIGASDSLAQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceE-EEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999988843210 01111 111 1111111 1222233344444444 88
Q ss_pred eEEEEecCCCCCCcc-------cccCC-CC-CCceEEEeCCChHHHhhcCCC---ceEEecCCCCcc-----CccCCChh
Q 039134 119 FALLLDDLRGPINLD-------EAGVP-DQ-NGSKIVFTTIMEDACNTMGDQ---IKFKVDYLRRDD-----DVLNFHPD 181 (339)
Q Consensus 119 ~LlvlDdv~~~~~l~-------~l~~~-~~-~~~~ilvTsR~~~~~~~~~~~---~~~~l~~L~~~~-----~~~~~~~~ 181 (339)
-|+++|......+.. .+... .. .++.+|++|....+....... ..+.+....+.+ ........
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~~ 159 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGVA 159 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECCC
Confidence 999999985432211 11111 22 477889999887664433211 112222211121 11112233
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHH
Q 039134 182 ILELAETVADLCRGLPLAHITIGRA 206 (339)
Q Consensus 182 ~~~~~~~i~~~~~G~Plal~~~~~~ 206 (339)
....+..+++.+ |+|-.+..-|..
T Consensus 160 ~~s~a~~~a~~~-g~~~~i~~~a~~ 183 (185)
T smart00534 160 GKSYGIEVAKLA-GLPKEVIERAKE 183 (185)
T ss_pred CCcHHHHHHHHh-CCCHHHHHHHHH
Confidence 345777777776 677766655543
No 207
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.06 E-value=0.0012 Score=59.36 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=35.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec----------CCCCHHHHHHH----HHHHhcCCceEEEEe
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV----------DNKNQQGRAEE----IFQRLSQRRFALLLD 124 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~----------~~~~~~~~~~~----l~~~l~~k~~LlvlD 124 (339)
+.|+|+|.||+||||+|+++...+.. ...+ +.++... ........... +.+.+ ++..++|+|
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~--~~~~-v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~D 77 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE--KGKE-VVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILD 77 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH--TT---EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh--cCCE-EEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEe
Confidence 57999999999999999999998842 2233 3444422 11112222222 22333 456899999
Q ss_pred cCCCCCC
Q 039134 125 DLRGPIN 131 (339)
Q Consensus 125 dv~~~~~ 131 (339)
|.....-
T Consensus 78 d~nYiKg 84 (270)
T PF08433_consen 78 DNNYIKG 84 (270)
T ss_dssp S---SHH
T ss_pred CCchHHH
Confidence 9876543
No 208
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0033 Score=62.23 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=53.4
Q ss_pred cchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--------
Q 039134 39 KGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV-------- 98 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-------- 98 (339)
=|..+..+-+.+.+.-+ ....-|+++|++|+|||-||..++.... .-++.+.
T Consensus 670 gg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~--------~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 670 GGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN--------LRFISVKGPELLSKY 741 (952)
T ss_pred ccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC--------eeEEEecCHHHHHHH
Confidence 34455555555555432 3446789999999999999999998862 2344443
Q ss_pred CCCCHHHHHHHHHHHh-cCCceEEEEecCCCC
Q 039134 99 DNKNQQGRAEEIFQRL-SQRRFALLLDDLRGP 129 (339)
Q Consensus 99 ~~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~ 129 (339)
.+.+ ++.+..++.+. ..++|+|.+|.+++.
T Consensus 742 IGaS-Eq~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 742 IGAS-EQNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred hccc-HHHHHHHHHHhhccCCeEEEecccccc
Confidence 2223 33444444444 569999999999765
No 209
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.05 E-value=0.00094 Score=58.39 Aligned_cols=77 Identities=19% Similarity=0.196 Sum_probs=51.2
Q ss_pred HHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCC-cceEEEEEec---------------------------
Q 039134 48 VWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHN-FYLVILVKAV--------------------------- 98 (339)
Q Consensus 48 l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~--------------------------- 98 (339)
|-+.|..+ +...+++|.|++|+|||+|+.+++.... .. -..++|++..
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~ 84 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLK 84 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEE
Confidence 33444443 5678999999999999999999876553 22 2456777755
Q ss_pred ------C-----CCCHHHHHHHHHHHhcC-CceEEEEecCC
Q 039134 99 ------D-----NKNQQGRAEEIFQRLSQ-RRFALLLDDLR 127 (339)
Q Consensus 99 ------~-----~~~~~~~~~~l~~~l~~-k~~LlvlDdv~ 127 (339)
. ..+.+.....+.+.++. +...+|+|.+.
T Consensus 85 ~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 85 IIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp EEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred EEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 0 23556666666666543 45788889873
No 210
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0026 Score=55.40 Aligned_cols=81 Identities=22% Similarity=0.388 Sum_probs=51.6
Q ss_pred cchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC-------
Q 039134 39 KGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD------- 99 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~------- 99 (339)
=|-+-...+|.+...-+ +.++-|+++||+|+|||-||+.++++-. ..| +.+..
T Consensus 158 ggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~---a~f-----irvvgsefvqky 229 (408)
T KOG0727|consen 158 GGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT---AAF-----IRVVGSEFVQKY 229 (408)
T ss_pred ccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc---hhe-----eeeccHHHHHHH
Confidence 45566666666654321 4778999999999999999999999863 333 22221
Q ss_pred -CCCHHHHHHHHHHHh-cCCceEEEEecCCC
Q 039134 100 -NKNQQGRAEEIFQRL-SQRRFALLLDDLRG 128 (339)
Q Consensus 100 -~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~ 128 (339)
+.. ..++..+++.. ++.+.++.+|.++.
T Consensus 230 lgeg-prmvrdvfrlakenapsiifideida 259 (408)
T KOG0727|consen 230 LGEG-PRMVRDVFRLAKENAPSIIFIDEIDA 259 (408)
T ss_pred hccC-cHHHHHHHHHHhccCCcEEEeehhhh
Confidence 111 12333333333 35688999999854
No 211
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0032 Score=59.29 Aligned_cols=62 Identities=19% Similarity=0.371 Sum_probs=41.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhcCCceEEEEecCCC
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLSQRRFALLLDDLRG 128 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~ 128 (339)
+-.+++||||.|||+++.++++.+ .|+ ++=+.+....+-.+ +..|..... .+-+||++|++-
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~yd-IydLeLt~v~~n~d-Lr~LL~~t~-~kSIivIEDIDc 297 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYD-IYDLELTEVKLDSD-LRHLLLATP-NKSILLIEDIDC 297 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCc-eEEeeeccccCcHH-HHHHHHhCC-CCcEEEEeeccc
Confidence 788999999999999999999998 455 33333333333333 444444333 456777888853
No 212
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.01 E-value=0.0021 Score=61.25 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=35.9
Q ss_pred cccchhHHHHHHHHHhhcC---------------CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 37 VKKGMESILDEVWECFEDD---------------FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~---------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+++|.+..++.+...+... -..+.++|+|++|+|||+||+.++...
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4599999998886555210 023679999999999999999999876
No 213
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.01 E-value=0.00058 Score=53.61 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.4
Q ss_pred EEEEeCCCchHHHHHHHHHhhh
Q 039134 61 ICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
|+|.|++|+||||+|+.+..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999883
No 214
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0016 Score=63.85 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=54.3
Q ss_pred cccc-hhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceE-------EEEE
Q 039134 37 VKKG-MESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLV-------ILVK 96 (339)
Q Consensus 37 ~~vG-R~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~-------~wv~ 96 (339)
.-+| -++...+|.+.+.-. ..++-|+++||+|+|||++|+.+++... -+|-.+ -|
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~---~nFlsvkgpEL~sk~-- 508 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG---MNFLSVKGPELFSKY-- 508 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc---CCeeeccCHHHHHHh--
Confidence 3366 555555555444321 5778999999999999999999999874 555322 12
Q ss_pred ecCCCCHHHHHHHHHHHh-cCCceEEEEecCCCC
Q 039134 97 AVDNKNQQGRAEEIFQRL-SQRRFALLLDDLRGP 129 (339)
Q Consensus 97 ~~~~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~ 129 (339)
-+.+.. .+..+++.- +-.++++.||.++..
T Consensus 509 --vGeSEr-~ir~iF~kAR~~aP~IiFfDEiDsi 539 (693)
T KOG0730|consen 509 --VGESER-AIREVFRKARQVAPCIIFFDEIDAL 539 (693)
T ss_pred --cCchHH-HHHHHHHHHhhcCCeEEehhhHHhH
Confidence 122333 333344333 456899999998644
No 215
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0045 Score=63.51 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=67.6
Q ss_pred ccccchhHHHHHHHHHhhcC-----C--CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC--------C
Q 039134 36 SVKKGMESILDEVWECFEDD-----F--PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD--------N 100 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~-----~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--------~ 100 (339)
..++|.++.+..|.+.+... . ....+.+.||.|+|||.||+.++..+. +..+..+-++.+. .
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F---gse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF---GSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc---CCccceEEechhhhhhhhhccC
Confidence 34589999999998888763 2 578999999999999999999999985 6666566665552 1
Q ss_pred ----CCHHHHHHHHHHHhcCCce-EEEEecCCCCC
Q 039134 101 ----KNQQGRAEEIFQRLSQRRF-ALLLDDLRGPI 130 (339)
Q Consensus 101 ----~~~~~~~~~l~~~l~~k~~-LlvlDdv~~~~ 130 (339)
.-..+....+.+.++.+++ +++|||++..+
T Consensus 639 sp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 639 SPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred CCcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 1223445577778887875 56679997664
No 216
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.99 E-value=0.00063 Score=54.66 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58999999999999999999776
No 217
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.99 E-value=0.0041 Score=55.64 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=35.1
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+..++++|+|.+|+|||+++.+++.... .....++|++..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~---~~ge~vlyvs~~ 60 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA---REGEPVLYVSTE 60 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH---hcCCcEEEEEec
Confidence 5779999999999999999999999885 557789999876
No 218
>PRK06547 hypothetical protein; Provisional
Probab=96.98 E-value=0.0012 Score=55.16 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 48 VWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 48 l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...+... ...+|+|.|++|+||||+|+.+++..
T Consensus 6 ~~~~~~~~-~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGG-GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcC-CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444444 78999999999999999999999876
No 219
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.96 E-value=0.0037 Score=61.10 Aligned_cols=50 Identities=28% Similarity=0.233 Sum_probs=36.8
Q ss_pred HHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 46 DEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 46 ~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
..+...|..+ ....+++|.|++|+|||||+.+++.... ..-..++++...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~e 300 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYE 300 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEee
Confidence 4555666654 5679999999999999999999998874 222345666544
No 220
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.96 E-value=0.004 Score=53.19 Aligned_cols=38 Identities=32% Similarity=0.468 Sum_probs=28.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
++++.++|+.|+||||.+-.++.++. .+ -..+..++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~-~~--~~~v~lis~D 38 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK-LK--GKKVALISAD 38 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH-HT--T--EEEEEES
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh-hc--cccceeecCC
Confidence 47899999999999998888888873 22 3446667665
No 221
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.96 E-value=0.0032 Score=65.66 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=38.7
Q ss_pred ccccchhHHHHHHHHHhhcC--------CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 36 SVKKGMESILDEVWECFEDD--------FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..++|.+..++.+...+... ....+++++|++|+|||++|+.+++...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 34689999999998888641 1225789999999999999999998763
No 222
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.95 E-value=0.0012 Score=64.69 Aligned_cols=59 Identities=29% Similarity=0.358 Sum_probs=44.9
Q ss_pred CccccccchhHHHHHHHHHhhcC----CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEE
Q 039134 33 DTLSVKKGMESILDEVWECFEDD----FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVK 96 (339)
Q Consensus 33 ~~~~~~vGR~~~~~~l~~~l~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 96 (339)
.+...++-=.+-++++..||... ...++++|+||+|+||||.++.+++.+ .|+..-|..
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 33444555567888999999862 345799999999999999999999886 466666753
No 223
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.95 E-value=0.0039 Score=58.58 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=34.5
Q ss_pred HHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 47 EVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 47 ~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
++...|..+ ....++.|.|++|+|||||+.+++.... ..-..++|++..
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~E 119 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGE 119 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECC
Confidence 344444433 3468999999999999999999998874 222456777643
No 224
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.93 E-value=0.0021 Score=65.75 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=39.5
Q ss_pred ccccchhHHHHHHHHHhhc--------CCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFED--------DFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++|.+..++.|...+.. +.....+.++||+|+|||.+|+.++..+
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999998873 1234679999999999999999998887
No 225
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.93 E-value=0.0041 Score=50.34 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=55.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEE------ecCCCCHHH-HHHHHHHHhcCCceEEEEecCCCC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVK------AVDNKNQQG-RAEEIFQRLSQRRFALLLDDLRGP 129 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~------~~~~~~~~~-~~~~l~~~l~~k~~LlvlDdv~~~ 129 (339)
...+++|.|+.|+|||||++.++.... ...+.+++. ...+.+..+ ..-.+.+.+-.++-++++|+-...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 458999999999999999999887752 223333332 112233333 333456667778899999997433
Q ss_pred CC---cccccCC-CCCCceEEEeCCChHHH
Q 039134 130 IN---LDEAGVP-DQNGSKIVFTTIMEDAC 155 (339)
Q Consensus 130 ~~---l~~l~~~-~~~~~~ilvTsR~~~~~ 155 (339)
-+ ...+... ...+..+|++|.+....
T Consensus 101 LD~~~~~~l~~~l~~~~~til~~th~~~~~ 130 (144)
T cd03221 101 LDLESIEALEEALKEYPGTVILVSHDRYFL 130 (144)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 22 1111000 11134677777765544
No 226
>PRK04132 replication factor C small subunit; Provisional
Probab=96.92 E-value=0.0095 Score=61.39 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=82.8
Q ss_pred EEe--CCCchHHHHHHHHHhhhhcccCCc-ceEEEEEecCCCCHHHHHHHHHHHhc-----C-CceEEEEecCCCCCC--
Q 039134 63 LYG--VSGVGKTTLLVNFNSKFSDTRHNF-YLVILVKAVDNKNQQGRAEEIFQRLS-----Q-RRFALLLDDLRGPIN-- 131 (339)
Q Consensus 63 I~G--~~GiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~l~~~l~-----~-k~~LlvlDdv~~~~~-- 131 (339)
+.| |.++||||+|..+++.... +.+ ..++-++.++....+.....+..... + +.-++|+|+++....
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g--~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~A 646 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFG--ENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA 646 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhc--ccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHH
Confidence 347 7899999999999998731 222 23556666654555655555544332 1 346999999987753
Q ss_pred cccc---cCCCCCCceEEEeCCCh-HHHhh-cCCCceEEecCCCCcc-----C---ccCCChhHHHHHHHHHHHcCCChH
Q 039134 132 LDEA---GVPDQNGSKIVFTTIME-DACNT-MGDQIKFKVDYLRRDD-----D---VLNFHPDILELAETVADLCRGLPL 198 (339)
Q Consensus 132 l~~l---~~~~~~~~~ilvTsR~~-~~~~~-~~~~~~~~l~~L~~~~-----~---~~~~~~~~~~~~~~i~~~~~G~Pl 198 (339)
...+ .......+.+|+++.+. .+... ......+.+.+++.++ . ....-.-..+....|++.|+|.+.
T Consensus 647 QnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR 726 (846)
T PRK04132 647 QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMR 726 (846)
T ss_pred HHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHH
Confidence 2333 11123455555555543 33222 2334678999998777 1 111122236678899999999885
Q ss_pred HHHHH
Q 039134 199 AHITI 203 (339)
Q Consensus 199 al~~~ 203 (339)
..-.+
T Consensus 727 ~AIn~ 731 (846)
T PRK04132 727 RAINI 731 (846)
T ss_pred HHHHH
Confidence 44433
No 227
>PRK06217 hypothetical protein; Validated
Probab=96.92 E-value=0.0022 Score=54.19 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=27.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCCc--ceEEEEE
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHNF--YLVILVK 96 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f--~~~~wv~ 96 (339)
..|+|.|.+|+||||+|+.+.+.+. ..++ |...|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~--~~~~~~D~~~~~~ 39 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD--IPHLDTDDYFWLP 39 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC--CcEEEcCceeecc
Confidence 3589999999999999999999873 2233 4555643
No 228
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.018 Score=52.54 Aligned_cols=159 Identities=12% Similarity=0.035 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhc-------ccCCcceEEEEEe-cCCCCHHHHHHHHHHHh-
Q 039134 44 ILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSD-------TRHNFYLVILVKA-VDNKNQQGRAEEIFQRL- 114 (339)
Q Consensus 44 ~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-------~~~~f~~~~wv~~-~~~~~~~~~~~~l~~~l- 114 (339)
.++.+...+..+.-..+++++|+.|.||+++|..+++...- ...+-+.+.++.. +.....++....+...-
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~ 83 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYF 83 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhcc
Confidence 34556666766546688999999999999999999888620 0111123334431 23344555544333221
Q ss_pred -c---CCceEEEEecCCCCCC-----cccc-cCCCCCCceEEEeCCChHHHh-hcCCCceEEecCCCCcc--CccCCChh
Q 039134 115 -S---QRRFALLLDDLRGPIN-----LDEA-GVPDQNGSKIVFTTIMEDACN-TMGDQIKFKVDYLRRDD--DVLNFHPD 181 (339)
Q Consensus 115 -~---~k~~LlvlDdv~~~~~-----l~~l-~~~~~~~~~ilvTsR~~~~~~-~~~~~~~~~l~~L~~~~--~~~~~~~~ 181 (339)
. +.+-++|+|+++.... +... -.|..+...|++|+....+.. .......+++.++++++ ........
T Consensus 84 ~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~~ 163 (299)
T PRK07132 84 SSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKNK 163 (299)
T ss_pred CCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcCC
Confidence 2 4778899999876643 2222 222333333444554444432 23445778999998777 11111112
Q ss_pred HHHHHHHHHHHcCCChHHHHH
Q 039134 182 ILELAETVADLCRGLPLAHIT 202 (339)
Q Consensus 182 ~~~~~~~i~~~~~G~Plal~~ 202 (339)
..+.+..++..++|.=.|+..
T Consensus 164 ~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 164 EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred ChhHHHHHHHHcCCHHHHHHH
Confidence 234455566666663344444
No 229
>PRK07667 uridine kinase; Provisional
Probab=96.91 E-value=0.0015 Score=55.65 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=30.8
Q ss_pred HHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 45 LDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 45 ~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
++.|.+.+... +...+|+|.|++|+||||+|+.+.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35566666553 3558999999999999999999999873
No 230
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.90 E-value=0.0056 Score=53.07 Aligned_cols=86 Identities=20% Similarity=0.324 Sum_probs=56.8
Q ss_pred cccchhHHHHHHHHHhhc---CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHH
Q 039134 37 VKKGMESILDEVWECFED---DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQR 113 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 113 (339)
.++|-+...+.+.+.-.. +....-|+++|.-|+|||+|++.+.+.+. ...--.+-|+-.+..+. -.+...
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~---~~glrLVEV~k~dl~~L----p~l~~~ 133 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYA---DEGLRLVEVDKEDLATL----PDLVEL 133 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHH---hcCCeEEEEcHHHHhhH----HHHHHH
Confidence 358888888887765433 44667899999999999999999999984 32222222211122222 334444
Q ss_pred hc--CCceEEEEecCCCC
Q 039134 114 LS--QRRFALLLDDLRGP 129 (339)
Q Consensus 114 l~--~k~~LlvlDdv~~~ 129 (339)
|+ .++++|.+||+.-.
T Consensus 134 Lr~~~~kFIlFcDDLSFe 151 (287)
T COG2607 134 LRARPEKFILFCDDLSFE 151 (287)
T ss_pred HhcCCceEEEEecCCCCC
Confidence 54 47899999999544
No 231
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0049 Score=57.48 Aligned_cols=78 Identities=21% Similarity=0.368 Sum_probs=50.8
Q ss_pred HHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC---------------CC----CHHHH
Q 039134 47 EVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD---------------NK----NQQGR 106 (339)
Q Consensus 47 ~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---------------~~----~~~~~ 106 (339)
++-..|..+ -...+++|-|.+|||||||..+++.++. ..- .++|++-.. .. -.+..
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~ 156 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETN 156 (456)
T ss_pred HHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcC
Confidence 333444432 2458999999999999999999999995 222 688887551 00 11223
Q ss_pred HHHHHHHhc-CCceEEEEecCCC
Q 039134 107 AEEIFQRLS-QRRFALLLDDLRG 128 (339)
Q Consensus 107 ~~~l~~~l~-~k~~LlvlDdv~~ 128 (339)
.+.+.+.+. .++-++|+|-+..
T Consensus 157 ~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 157 LEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred HHHHHHHHHhcCCCEEEEeccce
Confidence 334444443 5788999999843
No 232
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.88 E-value=0.0051 Score=53.44 Aligned_cols=148 Identities=20% Similarity=0.162 Sum_probs=72.0
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhc-ccCCc--------c--eEEEEEec--CCC--CHHHHH---HHHHHHhc--CCc
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSD-TRHNF--------Y--LVILVKAV--DNK--NQQGRA---EEIFQRLS--QRR 118 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~f--------~--~~~wv~~~--~~~--~~~~~~---~~l~~~l~--~k~ 118 (339)
.+++|+|+.|.||||+.+.++.-..- ....+ . ..++.... +.. ...... ..+...+. .++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999988532100 00111 0 01111111 110 011111 12333332 578
Q ss_pred eEEEEecC---CCCCCc----ccccCC-CC-CCceEEEeCCChHHHhhcCC---CceEEecCC-CCcc----CccCCChh
Q 039134 119 FALLLDDL---RGPINL----DEAGVP-DQ-NGSKIVFTTIMEDACNTMGD---QIKFKVDYL-RRDD----DVLNFHPD 181 (339)
Q Consensus 119 ~LlvlDdv---~~~~~l----~~l~~~-~~-~~~~ilvTsR~~~~~~~~~~---~~~~~l~~L-~~~~----~~~~~~~~ 181 (339)
-|+++|.. -+..+- ..+... .. .++.+|++|.+..+...... ...+.+..- +.++ ........
T Consensus 111 ~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l~~~ykl~~G~~ 190 (216)
T cd03284 111 SLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGVVFLHKIVEGAA 190 (216)
T ss_pred eEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeEEEEEEECcCCC
Confidence 99999997 222111 111111 23 37788888888655332221 112222211 1111 12222333
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHh
Q 039134 182 ILELAETVADLCRGLPLAHITIGRAM 207 (339)
Q Consensus 182 ~~~~~~~i~~~~~G~Plal~~~~~~L 207 (339)
....+-.+++++ |+|-.+..-|..+
T Consensus 191 ~~s~a~~~a~~~-g~~~~ii~rA~~~ 215 (216)
T cd03284 191 DKSYGIEVARLA-GLPEEVIERAREI 215 (216)
T ss_pred CCcHHHHHHHHh-CcCHHHHHHHHHh
Confidence 456777777766 7888777666543
No 233
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.87 E-value=0.0018 Score=51.51 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 43 SILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 43 ~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++..++-+.|... +...+++|.|+-|+||||+++.+++.+
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444555555442 245799999999999999999999987
No 234
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.87 E-value=0.0026 Score=52.00 Aligned_cols=38 Identities=32% Similarity=0.315 Sum_probs=28.4
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
..+|.|+|.+|+||||||+.+.+++. ..-..+.+++..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~---~~g~~~~~LDgD 39 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF---ARGIKVYLLDGD 39 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH---HTTS-EEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEecCc
Confidence 46899999999999999999999994 333445555433
No 235
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0024 Score=62.68 Aligned_cols=89 Identities=20% Similarity=0.229 Sum_probs=53.7
Q ss_pred ccchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---CCCC
Q 039134 38 KKGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---DNKN 102 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---~~~~ 102 (339)
+.|.+...+.+.+.+.-. .....++++|++|+|||.||+.+++... ..|-.+..-.+. -...
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~---~~fi~v~~~~l~sk~vGes 320 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR---SRFISVKGSELLSKWVGES 320 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC---CeEEEeeCHHHhccccchH
Confidence 355666665555544321 3556899999999999999999999662 444333221111 1222
Q ss_pred HHHHHHHHHHHhcCCceEEEEecCCCC
Q 039134 103 QQGRAEEIFQRLSQRRFALLLDDLRGP 129 (339)
Q Consensus 103 ~~~~~~~l~~~l~~k~~LlvlDdv~~~ 129 (339)
.......+...-+..+++|++|.++..
T Consensus 321 ek~ir~~F~~A~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 321 EKNIRELFEKARKLAPSIIFIDEIDSL 347 (494)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEchhhh
Confidence 222233333334578999999999643
No 236
>PRK06762 hypothetical protein; Provisional
Probab=96.87 E-value=0.00095 Score=55.31 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=23.1
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.+|.|+|++|+||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999999887
No 237
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.86 E-value=0.01 Score=53.58 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=24.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+..++.|.|.+|+|||||+..++..+
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999999987
No 238
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.86 E-value=0.003 Score=58.88 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=53.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec-----------------CCCCHHHHHHHHHHHhcCCceE
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV-----------------DNKNQQGRAEEIFQRLSQRRFA 120 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-----------------~~~~~~~~~~~l~~~l~~k~~L 120 (339)
...++|.|+.|+||||++..+..... ......++.... ...........++..+...+=+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~---~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~ 198 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN---KNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDV 198 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC---cCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCE
Confidence 58899999999999999999887663 222223322111 0111233555667777888889
Q ss_pred EEEecCCCCCCcccccCCCCCCceEEEeCC
Q 039134 121 LLLDDLRGPINLDEAGVPDQNGSKIVFTTI 150 (339)
Q Consensus 121 lvlDdv~~~~~l~~l~~~~~~~~~ilvTsR 150 (339)
|++|.+.+.+...........|..++.|.-
T Consensus 199 i~vgEird~~~~~~~l~aa~tGh~v~~T~H 228 (343)
T TIGR01420 199 ILIGEMRDLETVELALTAAETGHLVFGTLH 228 (343)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 999998765544332111233444444443
No 239
>PRK05973 replicative DNA helicase; Provisional
Probab=96.84 E-value=0.0068 Score=53.22 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=29.8
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
.+...++|.|.+|+|||+++.+++.... +. -..+++++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~-Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAM--KS-GRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHH--hc-CCeEEEEEEe
Confidence 3558999999999999999999988763 22 2345566544
No 240
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.84 E-value=0.0031 Score=65.00 Aligned_cols=48 Identities=29% Similarity=0.452 Sum_probs=40.3
Q ss_pred ccccchhHHHHHHHHHhhc-----CCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 36 SVKKGMESILDEVWECFED-----DFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..++|.++..++|.+++.. ......++++|++|+||||+|+.++....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3469999999999988874 12456899999999999999999998873
No 241
>PRK04328 hypothetical protein; Provisional
Probab=96.84 E-value=0.0063 Score=54.11 Aligned_cols=48 Identities=17% Similarity=0.018 Sum_probs=33.4
Q ss_pred HHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 48 VWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 48 l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
|-+.|..+ +...++.|.|++|+|||+|+.+++.... ..-..++|++..
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge~~lyis~e 60 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGVYVALE 60 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEee
Confidence 34445443 4679999999999999999999876642 223445666543
No 242
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.83 E-value=0.0085 Score=52.41 Aligned_cols=48 Identities=23% Similarity=0.175 Sum_probs=33.7
Q ss_pred HHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 48 VWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 48 l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+.+.+..+ +....++|.|++|+|||+|+.+++.... ..-..++|++..
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e 57 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTE 57 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEcc
Confidence 33444333 4668999999999999999999876542 223466777653
No 243
>PRK08233 hypothetical protein; Provisional
Probab=96.83 E-value=0.0011 Score=55.65 Aligned_cols=25 Identities=44% Similarity=0.574 Sum_probs=23.3
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|+|.|++|+||||||..++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 5789999999999999999999887
No 244
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.82 E-value=0.0034 Score=54.81 Aligned_cols=149 Identities=16% Similarity=0.145 Sum_probs=74.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhccc-CCcc----eE------EEEEecC-------CCCHHHHHHHHHHHh--cC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTR-HNFY----LV------ILVKAVD-------NKNQQGRAEEIFQRL--SQ 116 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~f~----~~------~wv~~~~-------~~~~~~~~~~l~~~l--~~ 116 (339)
..++++|+|+.|.||||+.+.++.-..--+ ..|- .. +...... -.........+...+ ..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~ 108 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKSAT 108 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHHHHHHHHHHHHHhCC
Confidence 468999999999999999887654321000 1110 00 1111110 111122222333334 35
Q ss_pred CceEEEEecCC---CCCC--------cccccCCCCCCceEEEeCCChHHHhhcCCC---ceEEecCCCCc--c-----Cc
Q 039134 117 RRFALLLDDLR---GPIN--------LDEAGVPDQNGSKIVFTTIMEDACNTMGDQ---IKFKVDYLRRD--D-----DV 175 (339)
Q Consensus 117 k~~LlvlDdv~---~~~~--------l~~l~~~~~~~~~ilvTsR~~~~~~~~~~~---~~~~l~~L~~~--~-----~~ 175 (339)
.+-|+++|... +..+ ++.+. ...++.+|++|-...+....... ...++.....+ + ..
T Consensus 109 ~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~--~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~~~~Y~ 186 (222)
T cd03285 109 ENSLIIIDELGRGTSTYDGFGLAWAIAEYIA--TQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTLTMLYK 186 (222)
T ss_pred CCeEEEEecCcCCCChHHHHHHHHHHHHHHH--hcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcEeEEEE
Confidence 78899999983 2222 11111 23467888888875554322211 11222211111 1 11
Q ss_pred cCCChhHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 039134 176 LNFHPDILELAETVADLCRGLPLAHITIGRAMA 208 (339)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~ 208 (339)
..........+-.+++.+ |+|..+..-|..+.
T Consensus 187 l~~G~~~~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 187 VEKGACDQSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred EeeCCCCCcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 122222356677777766 89988887777654
No 245
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.82 E-value=0.0084 Score=49.58 Aligned_cols=95 Identities=21% Similarity=0.248 Sum_probs=55.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC------------------CCCHH-HHHHHHHHHhcCC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD------------------NKNQQ-GRAEEIFQRLSQR 117 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~------------------~~~~~-~~~~~l~~~l~~k 117 (339)
....++|.|+.|+|||||.+.++-.. ....+.+++.... +.+.. ...-.+.+.+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 45899999999999999999988765 2233334332110 01111 1222344556678
Q ss_pred ceEEEEecCCCCCC------cccccCC-CCCCceEEEeCCChHHH
Q 039134 118 RFALLLDDLRGPIN------LDEAGVP-DQNGSKIVFTTIMEDAC 155 (339)
Q Consensus 118 ~~LlvlDdv~~~~~------l~~l~~~-~~~~~~ilvTsR~~~~~ 155 (339)
+-++++|+-...-+ +..+... ...+..+|++|.+....
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 88999999854322 1111111 23366788888876543
No 246
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.82 E-value=0.0011 Score=56.64 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=22.4
Q ss_pred EEEEEeCCCchHHHHHHHHHhhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+|+|.|++|+||||+|+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999884
No 247
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.82 E-value=0.0098 Score=54.85 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHhhcC--CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 41 MESILDEVWECFEDD--FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 41 R~~~~~~l~~~l~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
|+...+.|.+.+... ..+.+|+|.|+=|+|||++.+.+.+.+.
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455667777888764 5789999999999999999999999884
No 248
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.81 E-value=0.0085 Score=51.35 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+++|+|+.|+|||||.+.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 899999999999999999887543
No 249
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.81 E-value=0.0038 Score=52.56 Aligned_cols=36 Identities=25% Similarity=0.097 Sum_probs=27.0
Q ss_pred EEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+++|.|++|+|||+|+.+++.... ..-..++|++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECC
Confidence 368999999999999999888763 222446677654
No 250
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.80 E-value=0.0045 Score=62.87 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|+|.+|+|||||++.+..-.
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55899999999999999999998776
No 251
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.80 E-value=0.018 Score=48.30 Aligned_cols=106 Identities=11% Similarity=0.022 Sum_probs=58.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEE------ecC--CCCHHH-HHHHHHHHhcCCceEEEEecCC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVK------AVD--NKNQQG-RAEEIFQRLSQRRFALLLDDLR 127 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~------~~~--~~~~~~-~~~~l~~~l~~k~~LlvlDdv~ 127 (339)
...+++|.|+.|+|||||++.++-... ...+.+++. ..+ ..+..+ ..-.+.+.+..++-++++|.-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI----PNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC----CCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 457999999999999999998887652 112222221 011 133222 2334556667788999999974
Q ss_pred CCCC------cccccCC--CCCCceEEEeCCChHHHhhcCCCceEEec
Q 039134 128 GPIN------LDEAGVP--DQNGSKIVFTTIMEDACNTMGDQIKFKVD 167 (339)
Q Consensus 128 ~~~~------l~~l~~~--~~~~~~ilvTsR~~~~~~~~~~~~~~~l~ 167 (339)
..-+ +..+... ...+..+|++|.+....... ....+.+.
T Consensus 100 s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 100 AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 3322 1111111 22235677777766544332 23445554
No 252
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.80 E-value=0.0024 Score=55.99 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=25.1
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+..+++|.|++|+|||||++.++..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 577899999999999999999999887
No 253
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.78 E-value=0.0044 Score=55.54 Aligned_cols=90 Identities=23% Similarity=0.234 Sum_probs=54.5
Q ss_pred cchhHHHHH-HHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec-------------CCCCHH
Q 039134 39 KGMESILDE-VWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV-------------DNKNQQ 104 (339)
Q Consensus 39 vGR~~~~~~-l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-------------~~~~~~ 104 (339)
.|-..+..+ +..++.. ....++|.|+.|+||||++..+.+... ..-..++.+... ......
T Consensus 62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~ 136 (264)
T cd01129 62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPGINQVQVNEKAGL 136 (264)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCCceEEEeCCcCCc
Confidence 554444433 4444433 357899999999999999998877763 111122222211 111112
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCCCCcc
Q 039134 105 GRAEEIFQRLSQRRFALLLDDLRGPINLD 133 (339)
Q Consensus 105 ~~~~~l~~~l~~k~~LlvlDdv~~~~~l~ 133 (339)
...+.+...++..+-.++++++.+.+...
T Consensus 137 ~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 137 TFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred CHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 35566677777788899999997765433
No 254
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.78 E-value=0.005 Score=55.27 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=60.3
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec------------------CCCCH---
Q 039134 45 LDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------------------DNKNQ--- 103 (339)
Q Consensus 45 ~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------------------~~~~~--- 103 (339)
.+.+...+........++|.|++|+|||||.+.++.... ...+.+++.-. ++.+.
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r 173 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIR 173 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhHHHHHHHhccccccccccc
Confidence 344444444433567899999999999999999998873 22222222100 00000
Q ss_pred ------HHHHHHHHHHh-cCCceEEEEecCCCCCCcccccCCCCCCceEEEeCCChHH
Q 039134 104 ------QGRAEEIFQRL-SQRRFALLLDDLRGPINLDEAGVPDQNGSKIVFTTIMEDA 154 (339)
Q Consensus 104 ------~~~~~~l~~~l-~~k~~LlvlDdv~~~~~l~~l~~~~~~~~~ilvTsR~~~~ 154 (339)
......+...+ ...+-++++|.....+.+..+......|..+|+||-....
T Consensus 174 ~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 174 TDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDV 231 (270)
T ss_pred ccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHH
Confidence 00011122222 2478899999986655444442222357789999987655
No 255
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.76 E-value=0.0012 Score=52.96 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=38.0
Q ss_pred EEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHH---Hh----------cCCceEEEEecCC
Q 039134 61 ICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQ---RL----------SQRRFALLLDDLR 127 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~---~l----------~~k~~LlvlDdv~ 127 (339)
|.|+|++|+|||+||+.+++... . ...-+.+....+.+++.....- .. -.++.+++||+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~---~---~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin 75 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG---R---PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEIN 75 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT---C---EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCG
T ss_pred EEEECCCCCCHHHHHHHHHHHhh---c---ceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcc
Confidence 78999999999999999999873 2 1222344433333333221110 00 0157899999997
Q ss_pred CC
Q 039134 128 GP 129 (339)
Q Consensus 128 ~~ 129 (339)
..
T Consensus 76 ~a 77 (139)
T PF07728_consen 76 RA 77 (139)
T ss_dssp G-
T ss_pred cC
Confidence 43
No 256
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.76 E-value=0.0012 Score=46.27 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.0
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++.|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 257
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.74 E-value=0.00099 Score=51.03 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.7
Q ss_pred EEEEeCCCchHHHHHHHHHhhhh
Q 039134 61 ICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
|.|+|++|+|||+||+.++....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999888874
No 258
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.74 E-value=0.0059 Score=54.06 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.||.|+|||||.+.++.-.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45899999999999999999998866
No 259
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.74 E-value=0.0083 Score=58.01 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=35.2
Q ss_pred HHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 46 DEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 46 ~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
..+...|..+ ....+++|.|++|+|||||+.+++.... ..-..++|++..
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~E 131 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGE 131 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECc
Confidence 4444545443 4568999999999999999999988773 121346677654
No 260
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.73 E-value=0.0034 Score=57.53 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=35.8
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.+.++=.......+...+..+ +.|.|.|++|+|||++|+.++....
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~---~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD---RRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC---CcEEEEeCCCChHHHHHHHHHHHHC
Confidence 344555555666777777655 5699999999999999999999883
No 261
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.73 E-value=0.0015 Score=56.44 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=24.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+..+|+|.|++|+|||||++.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999999886
No 262
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.72 E-value=0.0015 Score=56.34 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=24.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||++.++..+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999999876
No 263
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0051 Score=52.85 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
++.+|+|.|.+|+||||+|+.++..+.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999999983
No 264
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.016 Score=53.57 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=23.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
-...++++|+.|+|||++|..++...
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998876
No 265
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.71 E-value=0.0049 Score=55.00 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=36.8
Q ss_pred HHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhccc--C-CcceEEEEEecCCCCH
Q 039134 47 EVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTR--H-NFYLVILVKAVDNKNQ 103 (339)
Q Consensus 47 ~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~-~f~~~~wv~~~~~~~~ 103 (339)
.|-+.|..+ ....+.=|+|++|+|||+|+.+++-...... . .=..++|++-....+.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~ 86 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSP 86 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-H
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCH
Confidence 344555443 4567999999999999999998876542111 1 2246889986643333
No 266
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.70 E-value=0.0056 Score=58.18 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=36.1
Q ss_pred cccchhHHHHHHHHHhhc----------CC-------CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 37 VKKGMESILDEVWECFED----------DF-------PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~----------~~-------~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|.+..++.+...+.. .. ....++|+|++|+|||++|+.++...
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 459999999988766521 10 13579999999999999999999876
No 267
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.69 E-value=0.0093 Score=57.59 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=35.4
Q ss_pred HHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 46 DEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 46 ~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
..+...|..+ ....++.|.|++|+|||||+.+++.... ..-..++|++..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~E 117 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGE 117 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcc
Confidence 3444445443 4568999999999999999999998874 222346777654
No 268
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.0023 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=22.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+.|.++|.+|+||||+|++++..+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 5789999999999999999998874
No 269
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.68 E-value=0.039 Score=49.69 Aligned_cols=41 Identities=27% Similarity=0.228 Sum_probs=32.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
.+-+.+|+||.|+|||.|.+.+.... -+...-..++||+-.
T Consensus 86 qP~I~~VYGPTG~GKSqLlRNLis~~-lI~P~PETVfFItP~ 126 (369)
T PF02456_consen 86 QPFIGVVYGPTGSGKSQLLRNLISCQ-LIQPPPETVFFITPQ 126 (369)
T ss_pred CceEEEEECCCCCCHHHHHHHhhhcC-cccCCCCceEEECCC
Confidence 45677899999999999999888776 556666788888654
No 270
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.64 E-value=0.0049 Score=53.34 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=28.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+.+.++|.|++|+|||+|+..+++... -+.++++.+.
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~~-----~d~~V~~~iG 50 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQD-----ADVVVYALIG 50 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHCT-----TTEEEEEEES
T ss_pred cCCEEEEEcCcccccchhhHHHHhccc-----ccceeeeecc
Confidence 457889999999999999999999872 2333555554
No 271
>PRK03839 putative kinase; Provisional
Probab=96.64 E-value=0.0016 Score=54.78 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=21.6
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 272
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.63 E-value=0.025 Score=56.17 Aligned_cols=172 Identities=17% Similarity=0.159 Sum_probs=97.6
Q ss_pred ccccchhHHHHHHHHHhhcC----CCcEEEEEEeCCCchHHHHHHHHHhhhhc--ccCCcceEEEEEec-----------
Q 039134 36 SVKKGMESILDEVWECFEDD----FPMRIICLYGVSGVGKTTLLVNFNSKFSD--TRHNFYLVILVKAV----------- 98 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~~~~f~~~~wv~~~----------- 98 (339)
..+=+|+.+..+|...+..- ...+.+-|.|-+|+|||..+..|...+.. ..+.-....++.+.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 44579999999999988751 34569999999999999999999986521 11222222333333
Q ss_pred ---------CCCCHHHHHHHHHHHhc-----CCceEEEEecCCCCC---C--c-ccccCCCCCCceEEEeCCCh--HH--
Q 039134 99 ---------DNKNQQGRAEEIFQRLS-----QRRFALLLDDLRGPI---N--L-DEAGVPDQNGSKIVFTTIME--DA-- 154 (339)
Q Consensus 99 ---------~~~~~~~~~~~l~~~l~-----~k~~LlvlDdv~~~~---~--l-~~l~~~~~~~~~ilvTsR~~--~~-- 154 (339)
.........+.+..++. .+.+++++|+++... | + .-+.+|...+++++|.+-.. ++
T Consensus 476 ~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPE 555 (767)
T KOG1514|consen 476 EKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPE 555 (767)
T ss_pred HHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHH
Confidence 22233444444444443 356889999986442 1 2 22245555667665533221 11
Q ss_pred -------HhhcCCCceEEecCCCCcc-------Ccc----CCChhHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 039134 155 -------CNTMGDQIKFKVDYLRRDD-------DVL----NFHPDILELAETVADLCRGLPLAHITIGRAMA 208 (339)
Q Consensus 155 -------~~~~~~~~~~~l~~L~~~~-------~~~----~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~ 208 (339)
...++ ...+.++|.+..+ ... ......+-.++.++...|-.-.|+...-++.+
T Consensus 556 r~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 556 RLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred HHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11111 2346666666555 000 11123344556677777777777776655554
No 273
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.63 E-value=0.0017 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=23.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|.|+|++|+||||+|+.++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999987
No 274
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.62 E-value=0.0017 Score=54.71 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++++|.|++|+||||+++.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998775
No 275
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.62 E-value=0.005 Score=63.33 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=76.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhc-ccC------------CcceEEEEEecCCCCH-------HHHHHHHHHHhc-
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSD-TRH------------NFYLVILVKAVDNKNQ-------QGRAEEIFQRLS- 115 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~------------~f~~~~wv~~~~~~~~-------~~~~~~l~~~l~- 115 (339)
+...++|+|+.|.||||+.+.+.-...- ..+ .|+.+ +.......+. ......+...+.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i-~~~i~~~~si~~~LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI-FADIGDEQSIEQNLSTFSGHMKNISAILSK 399 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe-eeecChHhHHhhhhhHHHHHHHHHHHHHHh
Confidence 3589999999999999999888755100 001 12211 1111111111 111122222232
Q ss_pred -CCceEEEEecCCCCCC---cccc----cCC-CCCCceEEEeCCChHHHhhcCCCceEEec--CCCCcc----CccCCCh
Q 039134 116 -QRRFALLLDDLRGPIN---LDEA----GVP-DQNGSKIVFTTIMEDACNTMGDQIKFKVD--YLRRDD----DVLNFHP 180 (339)
Q Consensus 116 -~k~~LlvlDdv~~~~~---l~~l----~~~-~~~~~~ilvTsR~~~~~~~~~~~~~~~l~--~L~~~~----~~~~~~~ 180 (339)
..+-|+++|....-.+ -..+ ... ...++.+|+||....+.........+... .++.+. .......
T Consensus 400 ~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Ykl~~G~ 479 (771)
T TIGR01069 400 TTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYKLLKGI 479 (771)
T ss_pred cCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEEECCCC
Confidence 4789999999854332 1111 111 34578899999987653322111111111 122111 1111112
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 039134 181 DILELAETVADLCRGLPLAHITIGRAMAN 209 (339)
Q Consensus 181 ~~~~~~~~i~~~~~G~Plal~~~~~~L~~ 209 (339)
.-...+-.|++++ |+|-.+..-|..+-.
T Consensus 480 ~g~S~a~~iA~~~-Glp~~ii~~A~~~~~ 507 (771)
T TIGR01069 480 PGESYAFEIAQRY-GIPHFIIEQAKTFYG 507 (771)
T ss_pred CCCcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 2246777777776 777777777766543
No 276
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.0047 Score=49.52 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+-|+|+|-||+||||++.+++...
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 34678999999999999999999665
No 277
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.59 E-value=0.0041 Score=62.38 Aligned_cols=61 Identities=13% Similarity=0.247 Sum_probs=48.8
Q ss_pred CccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 33 DTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 33 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
..-..++|.+..++.|...+... +.+.++|++|+||||+|+.+++.+. ...++..+|....
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~---~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np 88 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR---RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNP 88 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC---CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCC
Confidence 34456799999999888877766 4799999999999999999998874 3345777887654
No 278
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.58 E-value=0.028 Score=51.21 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=39.3
Q ss_pred cccchhHHHHHHHHHhhcC---CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 37 VKKGMESILDEVWECFEDD---FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|-.++..++..++... +....+.|+||.|.|||+|......+.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~ 73 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI 73 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH
Confidence 3689999999999998763 467889999999999999998888774
No 279
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.018 Score=50.85 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.||.|.|||||.+.++--.
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44899999999999999999998744
No 280
>PTZ00301 uridine kinase; Provisional
Probab=96.55 E-value=0.0022 Score=55.39 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|+|.|++|+||||||+.+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 5789999999999999999998776
No 281
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.55 E-value=0.0077 Score=56.92 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=39.3
Q ss_pred ccccchhHHHHHHHHHhhcC-------------CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 36 SVKKGMESILDEVWECFEDD-------------FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.+++|.++..+.+.-.+... -.++.++++|++|+|||++|+.++....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999887666531 1347899999999999999999999874
No 282
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.55 E-value=0.0031 Score=56.32 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=61.4
Q ss_pred ccccchhHHHHHHHHHhhc----C--CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEE-EE---EecCCCCHHH
Q 039134 36 SVKKGMESILDEVWECFED----D--FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVI-LV---KAVDNKNQQG 105 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~----~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~-wv---~~~~~~~~~~ 105 (339)
..++|..-..+.|+..+.+ + .++-++.+||.+|+||.-+++.++++..+....-+.+- ++ +.......+.
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~ 161 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIED 161 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHH
Confidence 3457877777777777665 2 56789999999999999999999988743221111111 11 1113344555
Q ss_pred HHHHHHHHhc-----CCceEEEEecCCCC
Q 039134 106 RAEEIFQRLS-----QRRFALLLDDLRGP 129 (339)
Q Consensus 106 ~~~~l~~~l~-----~k~~LlvlDdv~~~ 129 (339)
-...+.+++. -++.|+|+|+++..
T Consensus 162 Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 162 YKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 5555665554 37899999999765
No 283
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.54 E-value=0.0036 Score=52.13 Aligned_cols=89 Identities=16% Similarity=0.139 Sum_probs=53.3
Q ss_pred ccchhHHHHHHHHHhhc-CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhc-
Q 039134 38 KKGMESILDEVWECFED-DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLS- 115 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~- 115 (339)
+||.+..+.++.+.+.. ......|.|+|+.|+||+.+|+.+.+.-.+... ..+-+++. ..+.+.....++-.-+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~---pfi~vnc~-~~~~~~~e~~LFG~~~~ 76 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNG---PFISVNCA-ALPEELLESELFGHEKG 76 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS----EEEEETT-TS-HHHHHHHHHEBCSS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccC---CeEEEehh-hhhcchhhhhhhccccc
Confidence 47888888888888775 123477789999999999999999886532122 22333332 3344444444442211
Q ss_pred ---------------CCceEEEEecCCCCC
Q 039134 116 ---------------QRRFALLLDDLRGPI 130 (339)
Q Consensus 116 ---------------~k~~LlvlDdv~~~~ 130 (339)
...=.|+||++....
T Consensus 77 ~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~ 106 (168)
T PF00158_consen 77 AFTGARSDKKGLLEQANGGTLFLDEIEDLP 106 (168)
T ss_dssp SSTTTSSEBEHHHHHTTTSEEEEETGGGS-
T ss_pred cccccccccCCceeeccceEEeecchhhhH
Confidence 134578999997663
No 284
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.54 E-value=0.01 Score=50.30 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=29.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCC-------cceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHN-------FYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-------f~~~~wv~~~ 98 (339)
...++.|.|++|+|||+++.+++......... -..++|+...
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E 79 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLE 79 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEecc
Confidence 34789999999999999999999888421111 1367788765
No 285
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.087 Score=47.66 Aligned_cols=146 Identities=8% Similarity=-0.005 Sum_probs=83.7
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc-----------cCCcceEEEEE-ecC--CCCHHHHHHH
Q 039134 44 ILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT-----------RHNFYLVILVK-AVD--NKNQQGRAEE 109 (339)
Q Consensus 44 ~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----------~~~f~~~~wv~-~~~--~~~~~~~~~~ 109 (339)
..+++...+..+.-...++++|+.|+||+++|..++....-. ..|-| ..|+. ... ....++. ..
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD-~~~i~p~~~~~~I~idqi-R~ 82 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD-IHEFSPQGKGRLHSIETP-RA 82 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC-EEEEecCCCCCcCcHHHH-HH
Confidence 456777778876567899999999999999999888776311 11333 22332 211 1344443 34
Q ss_pred HHHHh-----cCCceEEEEecCCCCCC--cccc----cCCCCCCceEEEeCCChHHH-hhcCCCceEEecCCCCccCccC
Q 039134 110 IFQRL-----SQRRFALLLDDLRGPIN--LDEA----GVPDQNGSKIVFTTIMEDAC-NTMGDQIKFKVDYLRRDDDVLN 177 (339)
Q Consensus 110 l~~~l-----~~k~~LlvlDdv~~~~~--l~~l----~~~~~~~~~ilvTsR~~~~~-~~~~~~~~~~l~~L~~~~~~~~ 177 (339)
+...+ .++.-++|+|+++.... ...+ -.|..+...|++|+....+. ........+.+.+++..
T Consensus 83 l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~~~----- 157 (290)
T PRK05917 83 IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEEKT----- 157 (290)
T ss_pred HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchhcc-----
Confidence 44444 35556889999976643 2222 22234444455555544443 22333456777666321
Q ss_pred CChhHHHHHHHHHHHcCCChH
Q 039134 178 FHPDILELAETVADLCRGLPL 198 (339)
Q Consensus 178 ~~~~~~~~~~~i~~~~~G~Pl 198 (339)
....+.+..++..++|.+-
T Consensus 158 --~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 158 --LVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred --CCCHHHHHHHHHHhCCChh
Confidence 1234456667777888663
No 286
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.0063 Score=57.04 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++++|++|+||||++..++...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999876
No 287
>PRK04040 adenylate kinase; Provisional
Probab=96.53 E-value=0.0024 Score=54.23 Aligned_cols=25 Identities=44% Similarity=0.704 Sum_probs=23.2
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|+|+|++|+||||+++.+++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 288
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.012 Score=48.17 Aligned_cols=97 Identities=22% Similarity=0.219 Sum_probs=57.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec-----------------CCCCH-HHHHHHHHHHhcCCc
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV-----------------DNKNQ-QGRAEEIFQRLSQRR 118 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-----------------~~~~~-~~~~~~l~~~l~~k~ 118 (339)
...+++|.|+.|.|||||++.++.... ...+.+++... .+.+. +...-.+...+...+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~----~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK----PTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNP 99 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCC
Confidence 448999999999999999999987652 23333433211 01222 222234556666788
Q ss_pred eEEEEecCCCCCC------cccccCC-CCCCceEEEeCCChHHHhh
Q 039134 119 FALLLDDLRGPIN------LDEAGVP-DQNGSKIVFTTIMEDACNT 157 (339)
Q Consensus 119 ~LlvlDdv~~~~~------l~~l~~~-~~~~~~ilvTsR~~~~~~~ 157 (339)
-++++|+....-+ +..+... ...+..++++|.+......
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 9999999854322 1111111 2225667888777655443
No 289
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.51 E-value=0.019 Score=52.06 Aligned_cols=26 Identities=42% Similarity=0.680 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|++|+||||++..++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 290
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.51 E-value=0.0022 Score=53.68 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998876
No 291
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.51 E-value=0.0033 Score=58.28 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=40.3
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+.++|++..+..+...+..+ +-+.+.|++|+|||+||+.++....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~---~~vll~G~PG~gKT~la~~lA~~l~ 68 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG---GHVLLEGPPGVGKTLLARALARALG 68 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC---CCEEEECCCCccHHHHHHHHHHHhC
Confidence 34799999999998888877 7889999999999999999999983
No 292
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.50 E-value=0.013 Score=48.89 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.5
Q ss_pred EEEEEeCCCchHHHHHHHHHhhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
++.+.|++|+||||++..++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999998773
No 293
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.50 E-value=0.0027 Score=64.13 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=52.1
Q ss_pred cccchhHHHHHHHHHhhc---C--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec------C
Q 039134 37 VKKGMESILDEVWECFED---D--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------D 99 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~---~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------~ 99 (339)
.+.|-+...+++.+.+.- . .-.+-++|+|++|+|||++|+.++.... ..| +.+..+ .
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~---~~f---~~is~~~~~~~~~ 226 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK---VPF---FTISGSDFVEMFV 226 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC---CCE---EEEehHHhHHhhh
Confidence 446777776666554431 1 1234599999999999999999988873 222 222221 1
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEecCCCC
Q 039134 100 NKNQQGRAEEIFQRLSQRRFALLLDDLRGP 129 (339)
Q Consensus 100 ~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~ 129 (339)
..........+.......+++|++|+++..
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l 256 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhh
Confidence 222222222233333457899999998654
No 294
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.50 E-value=0.0031 Score=62.32 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=38.8
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++|.+..++.+...+... ...-++|+|++|+|||++|+.+.+..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~-~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP-NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999887665 55677999999999999999997653
No 295
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.49 E-value=0.0018 Score=54.51 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|+|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57999999999999999999886
No 296
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.49 E-value=0.0022 Score=53.80 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=22.0
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+++|.|++|+|||||++.++...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 297
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.49 E-value=0.0071 Score=57.19 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=39.8
Q ss_pred ccccchhHHHHHHHHHhhcC-------------CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 36 SVKKGMESILDEVWECFEDD-------------FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.+++|.+..++.+..++... -.+..++++|++|+|||+||+.++....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999998888541 1247899999999999999999998873
No 298
>PRK10867 signal recognition particle protein; Provisional
Probab=96.49 E-value=0.02 Score=54.83 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.++.++|++|+||||++..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999998888877
No 299
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.49 E-value=0.011 Score=52.78 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=31.5
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+...++.|.|++|+|||+++.+++.... ..-..++|++..
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~E 73 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVE 73 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEec
Confidence 4678999999999999999999887753 223457777765
No 300
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.47 E-value=0.0039 Score=52.60 Aligned_cols=38 Identities=34% Similarity=0.406 Sum_probs=30.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
.+.++|+||+|+|||||+..++.... ..|...++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~---~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP---DKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST---TTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc---cccccceeeccc
Confidence 47899999999999999999999884 677655555544
No 301
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.45 E-value=0.0053 Score=49.47 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=28.4
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
++|.|+|+.|+|||||++.+++.+. +..+...+..+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~ 38 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTD 38 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEcc
Confidence 4799999999999999999999984 4556655566555
No 302
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.019 Score=49.56 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..-+.+|.||.|+||||||..+.-+.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999999988776
No 303
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.015 Score=52.10 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=56.4
Q ss_pred ccchhHHHHHHHHHhhc---------C--CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec----CCC-
Q 039134 38 KKGMESILDEVWECFED---------D--FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV----DNK- 101 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~---------~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~----~~~- 101 (339)
.-|-+...+.|.+..-- + ...+.|+++||+|.|||-||+.|+.... ..|-.+ +-+ .-.
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn---STFFSv---SSSDLvSKWmG 208 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN---STFFSV---SSSDLVSKWMG 208 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC---CceEEe---ehHHHHHHHhc
Confidence 46778888777765421 1 3468999999999999999999999873 333222 111 011
Q ss_pred CHHHHHHHHHHHh-cCCceEEEEecCCCC
Q 039134 102 NQQGRAEEIFQRL-SQRRFALLLDDLRGP 129 (339)
Q Consensus 102 ~~~~~~~~l~~~l-~~k~~LlvlDdv~~~ 129 (339)
.-+.++..+++.. +.++.+|.+|.++..
T Consensus 209 ESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 209 ESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred cHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 1233444555544 468999999999754
No 304
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.45 E-value=0.0051 Score=56.61 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=42.6
Q ss_pred ccccchhHHHHHHHHHhhc-----CCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFED-----DFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++|.++.++++++.+.. +.+.+++.++||.|.|||||+..+.+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999976 2577999999999999999999999988
No 305
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.44 E-value=0.013 Score=56.63 Aligned_cols=49 Identities=24% Similarity=0.389 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhh-----cC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 42 ESILDEVWECFE-----DD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 42 ~~~~~~l~~~l~-----~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
.+-+.++.+||. .+ -+.++++|+||+|+||||.++.++..+ .+..+=|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeeec
Confidence 455678888887 22 355799999999999999999988886 55566676
No 306
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.41 E-value=0.011 Score=52.01 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=32.8
Q ss_pred HHHHHHHhhc-CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 45 LDEVWECFED-DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 45 ~~~l~~~l~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
..++.+.+.. .++..+|+|+|+||+|||||...+...+ +.+++=-+++-++-+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPS 68 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPS 68 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GG
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCC
Confidence 3344444443 3467899999999999999999999988 333322244444433
No 307
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.40 E-value=0.0023 Score=52.03 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=20.9
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+++|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998876
No 308
>PRK00625 shikimate kinase; Provisional
Probab=96.40 E-value=0.0026 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.|.|+|++|+||||+++.+++++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 309
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.40 E-value=0.017 Score=52.03 Aligned_cols=27 Identities=37% Similarity=0.615 Sum_probs=24.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+..++.++|++|+||||++..++..+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999998873
No 310
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.39 E-value=0.0028 Score=49.82 Aligned_cols=27 Identities=41% Similarity=0.578 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHhhhhcccCCcc
Q 039134 61 ICLYGVSGVGKTTLLVNFNSKFSDTRHNFY 90 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~ 90 (339)
|+|.|.+|+|||++|+.++.... ..|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~---~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG---LSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-----EE
T ss_pred EeeECCCccHHHHHHHHHHHHcC---Ccee
Confidence 68999999999999999999884 5564
No 311
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.37 E-value=0.012 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNS 80 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~ 80 (339)
..+++|+|+.|.||||+.+.++.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 37999999999999999999984
No 312
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.36 E-value=0.014 Score=49.33 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=22.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++|.|+.|+||||+++.++...
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999999999999988765
No 313
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.36 E-value=0.021 Score=49.54 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=21.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..-+++|.|++|+|||||...+.--.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45899999999999999988776443
No 314
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.35 E-value=0.0028 Score=52.75 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=19.9
Q ss_pred EEEEeCCCchHHHHHHHHHhhh
Q 039134 61 ICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++|+|++|+|||||++.+++.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 315
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.029 Score=52.79 Aligned_cols=27 Identities=41% Similarity=0.627 Sum_probs=24.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.+++|+|+|++|+||||++..++..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999998773
No 316
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.31 E-value=0.013 Score=58.72 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=44.3
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
...++|.+..++.+...+... ..+.++|++|+|||++|+.+++... ...|...+++...
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~---~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~ 75 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK---RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNP 75 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC---CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCC
Confidence 345699999998888888766 3677999999999999999999884 2234444444433
No 317
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.30 E-value=0.0073 Score=47.33 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|++.|.=|+||||+++.+++.+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 34999999999999999999999987
No 318
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.29 E-value=0.0042 Score=51.91 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=24.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|++|+||||+|+.++..+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999987
No 319
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.019 Score=55.93 Aligned_cols=26 Identities=35% Similarity=0.602 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|++|+||||++..++..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999988876
No 320
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.29 E-value=0.017 Score=57.10 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=24.1
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++...++|+|++|+|||||++.++...
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466899999999999999999998765
No 321
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.28 E-value=0.0038 Score=52.92 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+..+++|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46889999999999999999998876
No 322
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.28 E-value=0.023 Score=47.00 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=25.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+..+|.++|.+|+||||+|..+...+.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~ 48 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLF 48 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999999984
No 323
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.28 E-value=0.0091 Score=48.61 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEeCCCchHHHHHHHHHhhh
Q 039134 63 LYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 63 I~G~~GiGKTtLa~~~~~~~ 82 (339)
|.|++|+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999987
No 324
>PRK14527 adenylate kinase; Provisional
Probab=96.27 E-value=0.0037 Score=53.10 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|++|+||||+|+.+++.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 325
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.27 E-value=0.0068 Score=51.94 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEEEeCCCchHHHHHHHHH
Q 039134 59 RIICLYGVSGVGKTTLLVNFN 79 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~ 79 (339)
++++|+|+.|+|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999887
No 326
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.27 E-value=0.008 Score=51.34 Aligned_cols=43 Identities=23% Similarity=0.184 Sum_probs=33.5
Q ss_pred cccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 37 VKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|.+.....+.-..... .-+++.|++|+|||++|+.+..-+
T Consensus 4 dI~GQe~aKrAL~iAAaG~---h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAGG---HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CSSSTHHHHHHHHHHHHCC-----EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhcCcHHHHHHHHHHHcCC---CCeEEECCCCCCHHHHHHHHHHhC
Confidence 4688888888887777754 789999999999999999988654
No 327
>PHA02244 ATPase-like protein
Probab=96.27 E-value=0.0063 Score=56.60 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=33.5
Q ss_pred CccccccchhHHHH----HHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 33 DTLSVKKGMESILD----EVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 33 ~~~~~~vGR~~~~~----~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.-...++|....+. .+..++..+ ..|.|+|++|+|||+||+.+++..
T Consensus 93 ~~d~~~ig~sp~~~~~~~ri~r~l~~~---~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 93 GIDTTKIASNPTFHYETADIAKIVNAN---IPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred hCCCcccCCCHHHHHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHHHHHHHh
Confidence 33455677655554 444444444 457889999999999999999886
No 328
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.0033 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.|.|.|++|+||||+|+.+++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 329
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.25 E-value=0.019 Score=50.61 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=30.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
...+++|.|++|+|||+++.+++.+.. ...-..++|++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA--KKQGKPVLFFSLE 51 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCceEEEeCC
Confidence 457999999999999999999888764 1212356777654
No 330
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.24 E-value=0.0062 Score=55.20 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=23.3
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.+-+|+|.|++|+||||+|+.+....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999998776665
No 331
>PF13245 AAA_19: Part of AAA domain
Probab=96.23 E-value=0.0044 Score=44.25 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=19.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++++|.|++|.|||+++.......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4778899999999996655555544
No 332
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.23 E-value=0.0056 Score=55.01 Aligned_cols=111 Identities=17% Similarity=0.169 Sum_probs=63.0
Q ss_pred cccchhHHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--------------CCC
Q 039134 37 VKKGMESILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--------------DNK 101 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--------------~~~ 101 (339)
.+.-.....+++.+.|... ...+.++|.|+.|+||||++..++.... ..-..++-+... ...
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~---~~~~~iv~iEd~~E~~l~~~~~~~~~~~~ 181 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP---PEDERIVTIEDPPELRLPGPNQIQIQTRR 181 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH---TTTSEEEEEESSS-S--SCSSEEEEEEET
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcc---ccccceEEeccccceeecccceEEEEeec
Confidence 3333334445555555542 2469999999999999999999988774 221222222221 112
Q ss_pred CHHHHHHHHHHHhcCCceEEEEecCCCCCCcccccCCCCCCceE-EEeCCC
Q 039134 102 NQQGRAEEIFQRLSQRRFALLLDDLRGPINLDEAGVPDQNGSKI-VFTTIM 151 (339)
Q Consensus 102 ~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~l~~l~~~~~~~~~i-lvTsR~ 151 (339)
......+.+...|+..+=.++++.+.+.+....+ .....|..+ +.|...
T Consensus 182 ~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~-~a~~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 182 DEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAI-QAANTGHLGSLTTLHA 231 (270)
T ss_dssp TTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHH-HHHHTT-EEEEEEEE-
T ss_pred CcccHHHHHHHHhcCCCCcccccccCCHhHHHHH-HhhccCCceeeeeeec
Confidence 3445566677778888888999988776654443 123345555 444443
No 333
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.22 E-value=0.022 Score=48.79 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=20.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
...+++|+||+|+|||||.+-+-.-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4589999999999999998866543
No 334
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.22 E-value=0.0029 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEeCCCchHHHHHHHHHhhh
Q 039134 61 ICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999887
No 335
>PRK13947 shikimate kinase; Provisional
Probab=96.21 E-value=0.0037 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=21.7
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.|+|+|++|+||||+|+.+++.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 336
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.21 E-value=0.004 Score=53.45 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35789999999999999999999886
No 337
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.0036 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|.|.|++|+||||+|+.+++++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 68999999999999999999998
No 338
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.21 E-value=0.02 Score=56.38 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=35.7
Q ss_pred HHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 46 DEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 46 ~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
..|.+.|..+ +...++.|.|++|+|||+|+.+++.... ..-..++|+...
T Consensus 260 ~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~---~~g~~~~yis~e 310 (509)
T PRK09302 260 PDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAAC---RRGERCLLFAFE 310 (509)
T ss_pred HHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEec
Confidence 4444555443 4568999999999999999999987763 233556777654
No 339
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.21 E-value=0.0033 Score=53.70 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998875
No 340
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.21 E-value=0.0047 Score=52.79 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|.+|+||||+|+.++.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999999986
No 341
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.20 E-value=0.0092 Score=58.37 Aligned_cols=36 Identities=19% Similarity=0.080 Sum_probs=27.4
Q ss_pred HHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 48 VWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 48 l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+++.|..-...+..+|+|++|+|||+|++.+++...
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~ 441 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT 441 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh
Confidence 344444323568889999999999999999998763
No 342
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.19 E-value=0.021 Score=54.82 Aligned_cols=27 Identities=33% Similarity=0.467 Sum_probs=24.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.+.++.++|++|+||||++..++..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999998873
No 343
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.025 Score=48.87 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=59.9
Q ss_pred HHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcc--eEEEEEec----------CCCCHHHHHHHHH----
Q 039134 48 VWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFY--LVILVKAV----------DNKNQQGRAEEIF---- 111 (339)
Q Consensus 48 l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~----------~~~~~~~~~~~l~---- 111 (339)
+...+-+. ...-.+|.|++|+|||||.+.+++-.+...+.|- -++-++.+ +......+.+.+.
T Consensus 128 li~~ly~~-g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk 206 (308)
T COG3854 128 LIKDLYQN-GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPK 206 (308)
T ss_pred HHHHHHhc-CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchH
Confidence 44444444 4566899999999999999999998863334442 23333333 1111111111111
Q ss_pred -----HHh-cCCceEEEEecCCCCCCcccccCCCCCCceEEEeCC
Q 039134 112 -----QRL-SQRRFALLLDDLRGPINLDEAGVPDQNGSKIVFTTI 150 (339)
Q Consensus 112 -----~~l-~~k~~LlvlDdv~~~~~l~~l~~~~~~~~~ilvTsR 150 (339)
... +-.+=++|+|.+-..++...+......|.+++.|..
T Consensus 207 ~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~~GVkli~TaH 251 (308)
T COG3854 207 AEGMMMAIRSMSPEVIIVDEIGTEEDALAILTALHAGVKLITTAH 251 (308)
T ss_pred HHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHhcCcEEEEeec
Confidence 111 235779999999777665555333566788777764
No 344
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.18 E-value=0.0036 Score=52.48 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=22.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+++|+|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999875
No 345
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.18 E-value=0.012 Score=60.70 Aligned_cols=151 Identities=19% Similarity=0.160 Sum_probs=79.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh--c-----------ccCCcceEEEEEecCCCCH-------HHHHHHHHHHhc-
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS--D-----------TRHNFYLVILVKAVDNKNQ-------QGRAEEIFQRLS- 115 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~--~-----------~~~~f~~~~wv~~~~~~~~-------~~~~~~l~~~l~- 115 (339)
..++++|+|+.+.||||+.+.++-... . .-..|+ .++...+...+. ......+...+.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~ 404 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSGHMTNIVRILEK 404 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHHHHHHHHHHHHh
Confidence 457899999999999999987764310 0 011222 233333322221 122222222332
Q ss_pred -CCceEEEEecCCCCCCc---ccc----cCC-CCCCceEEEeCCChHHHhhcCCCce---EEecCCCCcc----CccCCC
Q 039134 116 -QRRFALLLDDLRGPINL---DEA----GVP-DQNGSKIVFTTIMEDACNTMGDQIK---FKVDYLRRDD----DVLNFH 179 (339)
Q Consensus 116 -~k~~LlvlDdv~~~~~l---~~l----~~~-~~~~~~ilvTsR~~~~~~~~~~~~~---~~l~~L~~~~----~~~~~~ 179 (339)
..+.|+++|....-.+. ..+ ... ...++.+|+||.............. ..+. ++.+. ......
T Consensus 405 ~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~~~l~~~Ykl~~G 483 (782)
T PRK00409 405 ADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE-FDEETLRPTYRLLIG 483 (782)
T ss_pred CCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-EecCcCcEEEEEeeC
Confidence 47889999998543221 111 111 3457889999998766443322111 1111 12111 111122
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHhccC
Q 039134 180 PDILELAETVADLCRGLPLAHITIGRAMANT 210 (339)
Q Consensus 180 ~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~ 210 (339)
..-...+-.|++++ |+|-.+..-|..+-..
T Consensus 484 ~~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 484 IPGKSNAFEIAKRL-GLPENIIEEAKKLIGE 513 (782)
T ss_pred CCCCcHHHHHHHHh-CcCHHHHHHHHHHHhh
Confidence 22356777787777 7777777777765443
No 346
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.17 E-value=0.0037 Score=50.34 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|.|.|++|+||||+|+.++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999886
No 347
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.17 E-value=0.0047 Score=53.25 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.0
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
.....++|+|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46789999999999999999998754
No 348
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.17 E-value=0.015 Score=50.33 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=24.1
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 44 ILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 44 ~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+.+...+... .+.+|+||+|.|||+++..+....
T Consensus 6 Q~~Ai~~~~~~~---~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSN---GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSS---E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CCEEEECCCCCChHHHHHHHHHHh
Confidence 344454445444 389999999999998777777766
No 349
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.16 E-value=0.0079 Score=55.77 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=38.3
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+||.+..+..+.-.+.++ ...-++|.|++|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~-~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP-KIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCC-CCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 35699999998887777765 56778899999999999999997654
No 350
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0099 Score=58.60 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=54.8
Q ss_pred ccchhHHHHHHHH---HhhcC--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcc---eEEEEEecCCCCH
Q 039134 38 KKGMESILDEVWE---CFEDD--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFY---LVILVKAVDNKNQ 103 (339)
Q Consensus 38 ~vGR~~~~~~l~~---~l~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~---~~~wv~~~~~~~~ 103 (339)
.-|.++..+++.+ .|.++ .-++-++++||+|.|||.||+.++-... -.|. +--|+..--....
T Consensus 152 VAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~---VPFf~iSGS~FVemfVGvGA 228 (596)
T COG0465 152 VAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG---VPFFSISGSDFVEMFVGVGA 228 (596)
T ss_pred hcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC---CCceeccchhhhhhhcCCCc
Confidence 4788777666554 45443 2346789999999999999999998873 2221 1111111122233
Q ss_pred HHHHHHHHHHhcCCceEEEEecCCCC
Q 039134 104 QGRAEEIFQRLSQRRFALLLDDLRGP 129 (339)
Q Consensus 104 ~~~~~~l~~~l~~k~~LlvlDdv~~~ 129 (339)
........+..+..++++++|.++..
T Consensus 229 sRVRdLF~qAkk~aP~IIFIDEiDAv 254 (596)
T COG0465 229 SRVRDLFEQAKKNAPCIIFIDEIDAV 254 (596)
T ss_pred HHHHHHHHHhhccCCCeEEEehhhhc
Confidence 33333344445667899999998643
No 351
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.014 Score=52.56 Aligned_cols=67 Identities=24% Similarity=0.309 Sum_probs=43.8
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--CCCCHHHHHHHHHHHh----cCCceEEEEecCCC
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--DNKNQQGRAEEIFQRL----SQRRFALLLDDLRG 128 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~~~~~l~~~l----~~k~~LlvlDdv~~ 128 (339)
..+..++|||++|.|||-+|+.++.... -+| +.+..+ .+....+....+++.. ...+|+|.+|+++.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg---~nf---l~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDA 236 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMG---VNF---LKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDA 236 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcC---Cce---EEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhh
Confidence 4668899999999999999999999983 333 122222 2222233333333333 34689999999864
No 352
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.15 E-value=0.012 Score=56.51 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=30.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+.+.++|.|.+|+|||+|+..+++... +.+-+.+++.-++
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liG 181 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVG 181 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCC
Confidence 568899999999999999999998873 2234555555444
No 353
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.14 E-value=0.0036 Score=54.57 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|+|.|++|+||||||+.+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999887
No 354
>PRK14530 adenylate kinase; Provisional
Probab=96.13 E-value=0.0043 Score=53.81 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=22.0
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.|+|.|++|+||||+|+.++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999887
No 355
>PRK14974 cell division protein FtsY; Provisional
Probab=96.13 E-value=0.044 Score=50.77 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++.++.++|++|+||||++..++..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999888877
No 356
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.13 E-value=0.018 Score=51.44 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=29.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhc-ccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSD-TRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~f~~~~wv~~~ 98 (339)
+.+.++|.|.+|+|||+|+..++++..- .+.+-+.++++-+.
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IG 110 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMG 110 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEec
Confidence 5678899999999999999998877510 11223556666555
No 357
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.13 E-value=0.0074 Score=56.09 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=39.1
Q ss_pred cccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 37 VKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+||.++.+..|...+.++ ..+-++|.|+.|+||||+|+.++.-.
T Consensus 18 ~ivGq~~~k~al~~~~~~p-~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDP-KIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHhChHHHHHHHHHhccCC-CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4599999998888888876 67788899999999999999997665
No 358
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.12 E-value=0.028 Score=51.76 Aligned_cols=27 Identities=37% Similarity=0.552 Sum_probs=24.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+..+++++|++|+||||++..++..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999998873
No 359
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.12 E-value=0.0071 Score=55.95 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=37.1
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++|.+..++.+.-.+... +..-+++.|++|+||||+|+.+..-+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~-~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP-GIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc-CCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 45699999999887655433 34569999999999999999997766
No 360
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.12 E-value=0.027 Score=50.61 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=36.6
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHH
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGR 106 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 106 (339)
+..+++=|+|+.|+||||+|.+++-... ..-..++|++.....+.+..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq---~~g~~a~fIDtE~~l~p~r~ 105 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQ---KPGGKAAFIDTEHALDPERA 105 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhh---cCCCeEEEEeCCCCCCHHHH
Confidence 5778999999999999999999888773 33347889987744444433
No 361
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.11 E-value=0.0088 Score=51.15 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=24.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++.|+|++|+||||||+.+...+
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999887
No 362
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.11 E-value=0.0046 Score=50.26 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.7
Q ss_pred EEEEeCCCchHHHHHHHHHhhh
Q 039134 61 ICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
|.|+|++|+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 363
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.10 E-value=0.0046 Score=49.64 Aligned_cols=23 Identities=52% Similarity=0.778 Sum_probs=20.9
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|+|++|+|||||++.++...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999876
No 364
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.049 Score=51.49 Aligned_cols=26 Identities=35% Similarity=0.614 Sum_probs=23.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+++++++|+.|+||||.+..++..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998876
No 365
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.08 E-value=0.023 Score=55.95 Aligned_cols=50 Identities=16% Similarity=0.010 Sum_probs=34.4
Q ss_pred HHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 47 EVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 47 ~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
.|-+.|..+ +..++++|.|.+|+|||+|+.+++..... ..-..++|++..
T Consensus 19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~--~~ge~~lyis~e 69 (509)
T PRK09302 19 GFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIK--RFDEPGVFVTFE 69 (509)
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hcCCCEEEEEcc
Confidence 344445443 56799999999999999999998876531 112345666654
No 366
>PTZ00035 Rad51 protein; Provisional
Probab=96.07 E-value=0.044 Score=50.90 Aligned_cols=57 Identities=14% Similarity=0.042 Sum_probs=36.1
Q ss_pred HHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcc--cC-CcceEEEEEecCCCCH
Q 039134 47 EVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDT--RH-NFYLVILVKAVDNKNQ 103 (339)
Q Consensus 47 ~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~-~f~~~~wv~~~~~~~~ 103 (339)
.|-..|..+ +...++.|+|++|+|||+|+..++-..... .. .-..++|++.......
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~ 166 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRP 166 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCH
Confidence 344445444 567899999999999999999887654100 11 1234668775543333
No 367
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.07 E-value=0.11 Score=46.12 Aligned_cols=174 Identities=11% Similarity=0.044 Sum_probs=94.2
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhc---ccCCcceEEEEEec-------------
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSD---TRHNFYLVILVKAV------------- 98 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~------------- 98 (339)
...+.++++....+......+ ..+-+.++||+|.||-|.+-.+.+..-. .+-.-+..-|.+.+
T Consensus 12 l~~l~~~~e~~~~Lksl~~~~-d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSSTG-DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhhcccHHHHHHHHHHhcccC-CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 344677888888877776644 6899999999999999998888887631 01112333444433
Q ss_pred ----C-----CCCHHHHHHHHHHHhc-------C-Cce-EEEEecCCCCCC-----cccccCCCCCCceEEEeCCCh--H
Q 039134 99 ----D-----NKNQQGRAEEIFQRLS-------Q-RRF-ALLLDDLRGPIN-----LDEAGVPDQNGSKIVFTTIME--D 153 (339)
Q Consensus 99 ----~-----~~~~~~~~~~l~~~l~-------~-k~~-LlvlDdv~~~~~-----l~~l~~~~~~~~~ilvTsR~~--~ 153 (339)
. ..+.--..+.+++..+ + +++ ++|+-.++.... +..-...=...+++|+...+. .
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~Sri 170 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRI 170 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccc
Confidence 1 1111112223333221 2 333 455555554422 111111134467776644332 1
Q ss_pred HHhhcCCCceEEecCCCCcc-----C---ccCCChhHHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 039134 154 ACNTMGDQIKFKVDYLRRDD-----D---VLNFHPDILELAETVADLCRGLPLAHITIGRAMAN 209 (339)
Q Consensus 154 ~~~~~~~~~~~~l~~L~~~~-----~---~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~ 209 (339)
....-..-..+++...+++| . ......--.+++.+|++.++|+-.-.-.+....+-
T Consensus 171 IepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 171 IEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred hhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 11111223567888888888 0 01111122788999999999976554455444443
No 368
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.016 Score=56.02 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=29.1
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEE
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVK 96 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 96 (339)
+...-|+|+|.+|+||||+.+.+..-+ + +++.+.++
T Consensus 376 ~kGekVaIvG~nGsGKSTilr~LlrF~----d-~sG~I~Id 411 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGSGKSTILRLLLRFF----D-YSGSILID 411 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh----c-cCCcEEEC
Confidence 355789999999999999999999887 3 55566554
No 369
>PLN02348 phosphoribulokinase
Probab=96.06 E-value=0.013 Score=54.91 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=29.6
Q ss_pred HHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 46 DEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 46 ~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..+.......+.+-+|+|.|.+|+||||+|+.+.+.+.
T Consensus 37 ~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 37 SSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred HHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33444444434678999999999999999999999883
No 370
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.05 E-value=0.0043 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|+|.|.+|+||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999886
No 371
>PRK13949 shikimate kinase; Provisional
Probab=96.04 E-value=0.005 Score=51.33 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=22.1
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..|+|+|++|+||||+++.++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999987
No 372
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.04 E-value=0.0047 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.5
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|+|.|.+|+||||||+.+...+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999887
No 373
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.014 Score=51.24 Aligned_cols=47 Identities=23% Similarity=0.322 Sum_probs=38.4
Q ss_pred ccccchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.+=|-++.++++.+.+.-+ ..+.-++.+||+|.|||-+|+..+..-
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 34578899999999887432 466889999999999999999888775
No 374
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.03 E-value=0.014 Score=55.75 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....++|.|++|+|||||++.++...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC
Confidence 55889999999999999999988764
No 375
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.03 E-value=0.023 Score=52.15 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=46.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccC----------Ccc--eEEEEEecC---CCCHHHHHHHHHHHhcCCceEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRH----------NFY--LVILVKAVD---NKNQQGRAEEIFQRLSQRRFAL 121 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----------~f~--~~~wv~~~~---~~~~~~~~~~l~~~l~~k~~Ll 121 (339)
....++|.|+.|+|||||++.++........ .+. ..+.+.... ....-...+.+...++..+-.+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence 3479999999999999999988876631100 000 111111111 1111234455666777888889
Q ss_pred EEecCCCCCCcc
Q 039134 122 LLDDLRGPINLD 133 (339)
Q Consensus 122 vlDdv~~~~~l~ 133 (339)
++|.+...+.+.
T Consensus 223 i~gE~r~~e~~~ 234 (308)
T TIGR02788 223 ILGELRGDEAFD 234 (308)
T ss_pred EEeccCCHHHHH
Confidence 999997654443
No 376
>PLN02200 adenylate kinase family protein
Probab=96.03 E-value=0.0064 Score=53.51 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=23.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.+++|.|++|+||||+|+.++..+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 377
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.03 E-value=0.015 Score=52.21 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=36.6
Q ss_pred HHHHHhhc-CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 47 EVWECFED-DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 47 ~l~~~l~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+|+..+.. .++..+|+|+|.||+|||||...+...+ ..+++--.++-|+-+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPS 90 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPS 90 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCC
Confidence 34444443 2467899999999999999999999998 455544455555544
No 378
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.02 E-value=0.024 Score=49.10 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNS 80 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~ 80 (339)
.+.++|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999998874
No 379
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.01 E-value=0.023 Score=50.39 Aligned_cols=26 Identities=31% Similarity=0.179 Sum_probs=23.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+..+++|+|.+|+||||+++.+..-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc
Confidence 55899999999999999999999877
No 380
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.01 E-value=0.026 Score=46.43 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=23.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..-.++|+||+|+|||||.+.++.-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 44789999999999999999999876
No 381
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.00 E-value=0.029 Score=53.72 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.++.++|++|+||||++..++..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 36799999999999999999888875
No 382
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.99 E-value=0.0077 Score=50.20 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=24.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..+++.|+|++|+|||||+..+...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 467999999999999999999998883
No 383
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.0069 Score=50.56 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=22.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++|.||+|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999999999999998885
No 384
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.98 E-value=0.032 Score=57.00 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=50.7
Q ss_pred HHHHHhh-cC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---------------------CCCCH
Q 039134 47 EVWECFE-DD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---------------------DNKNQ 103 (339)
Q Consensus 47 ~l~~~l~-~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---------------------~~~~~ 103 (339)
.|...|. .+ +..+++.|+|++|+|||||+.+++.... ..-..++|+... ...+.
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~ 123 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCH
Confidence 3445555 33 5679999999999999999988776652 222345666544 23344
Q ss_pred HHHHHHHHHHhc-CCceEEEEecCC
Q 039134 104 QGRAEEIFQRLS-QRRFALLLDDLR 127 (339)
Q Consensus 104 ~~~~~~l~~~l~-~k~~LlvlDdv~ 127 (339)
+.....+...++ ++.-|+|+|-+.
T Consensus 124 E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 124 EQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHHHHHHHhhcCCCeEEEEcchh
Confidence 445555555443 467789999984
No 385
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.96 E-value=0.033 Score=51.20 Aligned_cols=61 Identities=11% Similarity=0.050 Sum_probs=40.2
Q ss_pred HHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhccc--C-CcceEEEEEecCCCCHHHHHH
Q 039134 48 VWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTR--H-NFYLVILVKAVDNKNQQGRAE 108 (339)
Q Consensus 48 l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~-~f~~~~wv~~~~~~~~~~~~~ 108 (339)
+...|..+ +...++.|+|++|+|||+|+.+++....... . .-..++|++.....+.+...+
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~ 148 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ 148 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH
Confidence 33444443 4678999999999999999999987752110 0 112688998765555554433
No 386
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.96 E-value=0.006 Score=47.14 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEeCCCchHHHHHHHHHhhhh
Q 039134 61 ICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
|+|.|..|+|||||.+.++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999997763
No 387
>PRK13975 thymidylate kinase; Provisional
Probab=95.96 E-value=0.0066 Score=51.66 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=22.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+|+|.|+.|+||||+++.++..+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999998
No 388
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.96 E-value=0.035 Score=54.28 Aligned_cols=34 Identities=24% Similarity=0.128 Sum_probs=26.9
Q ss_pred HHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 49 WECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 49 ~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.|..+ ++.++++|.|++|+|||+||.+++.+-
T Consensus 11 D~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g 45 (484)
T TIGR02655 11 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNG 45 (484)
T ss_pred HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3444443 567999999999999999999987653
No 389
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.95 E-value=0.036 Score=51.55 Aligned_cols=61 Identities=15% Similarity=0.047 Sum_probs=39.2
Q ss_pred HHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhc--ccC-CcceEEEEEecCCCCHHHHHH
Q 039134 48 VWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSD--TRH-NFYLVILVKAVDNKNQQGRAE 108 (339)
Q Consensus 48 l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~~~-~f~~~~wv~~~~~~~~~~~~~ 108 (339)
|...|..+ ....++.|+|++|+|||+|+..++-.... ... .-..++|++.......+...+
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~q 176 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ 176 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHH
Confidence 33444443 45689999999999999999988855411 011 112688988775555544433
No 390
>PRK05439 pantothenate kinase; Provisional
Probab=95.95 E-value=0.013 Score=53.56 Aligned_cols=27 Identities=26% Similarity=0.180 Sum_probs=24.2
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.+-+|+|.|.+|+||||+|+.+...+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999988866
No 391
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.95 E-value=0.024 Score=52.02 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=45.2
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---------------------CCCCHHHHHHHHHHHh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---------------------DNKNQQGRAEEIFQRL 114 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---------------------~~~~~~~~~~~l~~~l 114 (339)
+..+++-|+|+.|+||||||.++..... ..-..++|++.. .+...++.+..+...+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~q---~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~li 127 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEAQ---KQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLI 127 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH---HTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhhh---cccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHh
Confidence 4568999999999999999999998873 233567888876 2334444444444444
Q ss_pred cC-CceEEEEecCCC
Q 039134 115 SQ-RRFALLLDDLRG 128 (339)
Q Consensus 115 ~~-k~~LlvlDdv~~ 128 (339)
+. .--++|+|-|..
T Consensus 128 rsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 128 RSGAVDLVVVDSVAA 142 (322)
T ss_dssp HTTSESEEEEE-CTT
T ss_pred hcccccEEEEecCcc
Confidence 32 334667777643
No 392
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.94 E-value=0.019 Score=52.64 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=40.7
Q ss_pred ccccccchhHHHHH---HHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 34 TLSVKKGMESILDE---VWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 34 ~~~~~vGR~~~~~~---l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....+||..+..+. |.+++.++ ...+.|++.||+|.|||.||-.+++.+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh
Confidence 35678999877665 67777765 456899999999999999999999998
No 393
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.94 E-value=0.0057 Score=51.74 Aligned_cols=24 Identities=38% Similarity=0.629 Sum_probs=21.7
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++|.|++|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997765
No 394
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.93 E-value=0.031 Score=51.56 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=41.3
Q ss_pred HHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccC---CcceEEEEEecCCCCHHHHHHH
Q 039134 47 EVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH---NFYLVILVKAVDNKNQQGRAEE 109 (339)
Q Consensus 47 ~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~ 109 (339)
.+.+.|..+ +...++.|+|++|+|||+++.+++........ .-..++|++.....+.+.+.+.
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~ 156 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM 156 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH
Confidence 344444443 46789999999999999999999877521110 1136889887655555544433
No 395
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.93 E-value=0.03 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.||+|+||||||+.+.--.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 44789999999999999999876543
No 396
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.93 E-value=0.0086 Score=52.87 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=25.2
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.++..|+++||+|+||||+.+.+..+..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~ 44 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLH 44 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHh
Confidence 3568999999999999999999999984
No 397
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.92 E-value=0.15 Score=40.97 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=21.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.+.+.|+.|+|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999988765
No 398
>PRK14532 adenylate kinase; Provisional
Probab=95.92 E-value=0.0059 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEEeCCCchHHHHHHHHHhhh
Q 039134 61 ICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
|+|.|++|+||||+|+.+++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999876
No 399
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.91 E-value=0.014 Score=58.13 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=39.5
Q ss_pred cccccchhHHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 35 LSVKKGMESILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+|..+-|.+..+.|.+..... ....+|.|+|++|+||||+|+.++..+.
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 455588888888777776553 3556999999999999999999999983
No 400
>PRK06761 hypothetical protein; Provisional
Probab=95.91 E-value=0.0098 Score=53.59 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=27.3
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEE
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVIL 94 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~w 94 (339)
.+++.|.|++|+||||+++.+++.+. ...++..++
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~--~~g~~v~~~ 37 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILS--QNGIEVELY 37 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC--cCceEEEEE
Confidence 36899999999999999999999983 234444443
No 401
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=0.07 Score=49.87 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=28.5
Q ss_pred ccccchhHHHHHHH-HHhhcC-CCcEEEEEEeCCCchHH-HHHHHHHhh
Q 039134 36 SVKKGMESILDEVW-ECFEDD-FPMRIICLYGVSGVGKT-TLLVNFNSK 81 (339)
Q Consensus 36 ~~~vGR~~~~~~l~-~~l~~~-~~~~~v~I~G~~GiGKT-tLa~~~~~~ 81 (339)
+...-|+..++-+. ..+.+. -....++|+|+.|+||| +|++.+...
T Consensus 155 a~lLVRkpalel~~~~r~~d~~~P~~r~vL~Ge~GtGKSiaL~qa~h~a 203 (461)
T KOG3928|consen 155 AVLLVRKPALELLLYKRLVDPMHPVKRFVLDGEPGTGKSIALAQAVHYA 203 (461)
T ss_pred chheechHHHHHHHHhhhccccCcceEEEEeCCCCCchhhHHHHHHHHH
Confidence 34466666665554 233331 35678899999999999 455444433
No 402
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.90 E-value=0.0083 Score=45.74 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHH
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFN 79 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~ 79 (339)
....++|.|++|+|||||+..+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34789999999999999999876
No 403
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.89 E-value=0.0061 Score=49.64 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987
No 404
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.88 E-value=0.0062 Score=51.61 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.6
Q ss_pred EEEEeCCCchHHHHHHHHHhhh
Q 039134 61 ICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
|+|.|++|+||||+|+.++..+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999886
No 405
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.87 E-value=0.014 Score=53.68 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=25.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhc
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSD 84 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 84 (339)
+..-++|.|-+|+|||.|.+++.++..+
T Consensus 146 kGgKiGLFGGAGVGKTVl~~ELI~Nia~ 173 (468)
T COG0055 146 KGGKIGLFGGAGVGKTVLIQELINNIAK 173 (468)
T ss_pred cCceeeeeccCCccceeeHHHHHHHHHH
Confidence 4578899999999999999999999863
No 406
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.87 E-value=0.019 Score=54.87 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.7
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.....++|.|.+|+|||||++.+++..
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~ 182 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNA 182 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 356889999999999999999888765
No 407
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.87 E-value=0.029 Score=45.09 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHhh
Q 039134 61 ICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~ 81 (339)
|+|+|++|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999876
No 408
>PRK14531 adenylate kinase; Provisional
Probab=95.86 E-value=0.0075 Score=50.90 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..|+|+|++|+||||+++.++..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999886
No 409
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.86 E-value=0.016 Score=53.59 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=36.6
Q ss_pred cccccchhHHHHH---HHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 35 LSVKKGMESILDE---VWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 35 ~~~~vGR~~~~~~---l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+||..+..+. +.+++.++ -..+.++|.|++|.|||+||..+++.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 4578999877655 56666665 246899999999999999999999998
No 410
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.83 E-value=0.0075 Score=50.40 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...|+|.|+.|+||||+++.++...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3569999999999999999999886
No 411
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.83 E-value=0.0076 Score=55.00 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=22.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++++.|++|+||||+|+.+++++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 678999999999999999998876
No 412
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.83 E-value=0.0075 Score=49.75 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=17.6
Q ss_pred EEEEeCCCchHHHHHHHHHhh
Q 039134 61 ICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~ 81 (339)
|+|+|.+|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999876
No 413
>PRK08149 ATP synthase SpaL; Validated
Probab=95.82 E-value=0.016 Score=55.34 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...++|.|++|+|||||+..++...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~ 175 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS 175 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC
Confidence 45889999999999999999888754
No 414
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.82 E-value=0.029 Score=48.35 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=25.2
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++++++++|..|+|||||..++.+..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999999886
No 415
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.0066 Score=50.00 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=18.7
Q ss_pred EEEEEeCCCchHHHHHHHHH
Q 039134 60 IICLYGVSGVGKTTLLVNFN 79 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~ 79 (339)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999888
No 416
>PRK13946 shikimate kinase; Provisional
Probab=95.82 E-value=0.0074 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=23.2
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...|+++|++|+||||+++.+++++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999997
No 417
>PRK13948 shikimate kinase; Provisional
Probab=95.81 E-value=0.0082 Score=50.62 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=24.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|+|+.|+||||+++.+++++
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 56889999999999999999999987
No 418
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.81 E-value=0.0097 Score=49.67 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=43.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCC---HHHHHHHHHHHh-----cCCceEEEEecCCC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKN---QQGRAEEIFQRL-----SQRRFALLLDDLRG 128 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~---~~~~~~~l~~~l-----~~k~~LlvlDdv~~ 128 (339)
+...+.+.||+|+|||.||+.++..+. . +.....+-++.+.-.. .......+.... ....-+++||+++.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~-~-~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLF-V-GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT---SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhc-c-CCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 457899999999999999999999982 1 2344455555552111 111112221111 11223899999976
Q ss_pred CCC
Q 039134 129 PIN 131 (339)
Q Consensus 129 ~~~ 131 (339)
...
T Consensus 80 a~~ 82 (171)
T PF07724_consen 80 AHP 82 (171)
T ss_dssp CSH
T ss_pred ccc
Confidence 544
No 419
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.81 E-value=0.085 Score=43.34 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..|-|++..|.||||+|...+-+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~ 27 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL 27 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5778888889999999998887764
No 420
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.79 E-value=0.014 Score=52.90 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=24.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+-+|+|.|++|+||||+|..+++++
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 55789999999999999999999987
No 421
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.78 E-value=0.037 Score=55.61 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...++|+|++|+|||||++.+....
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 55889999999999999999998765
No 422
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.78 E-value=0.0084 Score=56.17 Aligned_cols=95 Identities=21% Similarity=0.222 Sum_probs=54.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcc---cCCcceEE-EEEec--CCCCHHHHHHHHHHHhcCCceEEEEecCCCCC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDT---RHNFYLVI-LVKAV--DNKNQQGRAEEIFQRLSQRRFALLLDDLRGPI 130 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~~f~~~~-wv~~~--~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~ 130 (339)
.++-+-|+|+.|.|||.|+..+++..... +-||.... .+.-. ........+..+.+.+.++..||+||.+.-.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V~D 140 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQVTD 140 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeeccc
Confidence 57899999999999999999999988421 12221000 00000 00111222344455666677899999984332
Q ss_pred C-----cccccCC-CCCCceEEEeCCC
Q 039134 131 N-----LDEAGVP-DQNGSKIVFTTIM 151 (339)
Q Consensus 131 ~-----l~~l~~~-~~~~~~ilvTsR~ 151 (339)
. +..+... ...|..+|.||..
T Consensus 141 iaDAmil~rLf~~l~~~gvvlVaTSN~ 167 (362)
T PF03969_consen 141 IADAMILKRLFEALFKRGVVLVATSNR 167 (362)
T ss_pred hhHHHHHHHHHHHHHHCCCEEEecCCC
Confidence 2 2222111 4567766666665
No 423
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.78 E-value=0.04 Score=50.36 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++|.|+.|+||||+++.++...
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 577899999999999999998776
No 424
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.76 E-value=0.024 Score=50.65 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=20.0
Q ss_pred CcEEEEEEeCCCchHHHHH-HHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLL-VNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa-~~~~~~ 81 (339)
+.+.++|.|.+|+|||+|| ..+.+.
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~ 93 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ 93 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh
Confidence 5588999999999999996 444443
No 425
>PRK10646 ADP-binding protein; Provisional
Probab=95.76 E-value=0.018 Score=46.88 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 42 ESILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 42 ~~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+++..++-+.|... ....+|.+.|.=|+||||+++.+++.+
T Consensus 11 ~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 11 EQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34555555555542 234789999999999999999999987
No 426
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.76 E-value=0.023 Score=54.42 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=30.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+.+.++|.|.+|+|||+|+..+++... +.+-+.++++-++
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iG 176 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIG 176 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEec
Confidence 568899999999999999999988863 1223566676554
No 427
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.75 E-value=0.037 Score=56.70 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.8
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++...++|+|+.|+|||||++.++...
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999999998766
No 428
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.74 E-value=0.007 Score=53.76 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=21.7
Q ss_pred EEEEEeCCCchHHHHHHHHHhhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.|+++|.+|+||||+|+.++..+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998873
No 429
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.74 E-value=0.047 Score=56.16 Aligned_cols=27 Identities=30% Similarity=0.552 Sum_probs=24.3
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++...++|+|++|+|||||++.+....
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 456899999999999999999998876
No 430
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.73 E-value=0.061 Score=51.63 Aligned_cols=25 Identities=36% Similarity=0.672 Sum_probs=22.3
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++++++|++|+||||++..++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999888776
No 431
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.72 E-value=0.014 Score=47.92 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 43 SILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 43 ~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.-+++|.+.+.. +++++.|++|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~~----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 345566666653 789999999999999999988874
No 432
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.70 E-value=0.0097 Score=50.67 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=23.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|+|-||=|+||||||+.+++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 5789999999999999999999998
No 433
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.016 Score=47.77 Aligned_cols=36 Identities=33% Similarity=0.373 Sum_probs=28.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVK 96 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 96 (339)
..-.++++|++|+|||||.+.+|.++ .-=.+.+|+.
T Consensus 36 aGECvvL~G~SG~GKStllr~LYaNY----~~d~G~I~v~ 71 (235)
T COG4778 36 AGECVVLHGPSGSGKSTLLRSLYANY----LPDEGQILVR 71 (235)
T ss_pred CccEEEeeCCCCCcHHHHHHHHHhcc----CCCCceEEEE
Confidence 44688999999999999999999987 2223566764
No 434
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.009 Score=52.22 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++--.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45899999999999999999887654
No 435
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.0085 Score=52.10 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....++|+|++|+|||||++.++--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45899999999999999999988766
No 436
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.69 E-value=0.028 Score=48.81 Aligned_cols=101 Identities=18% Similarity=0.087 Sum_probs=55.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcc-cC-----------CcceEEEEEecCC-------CCHHHHHHHHHHHhc--
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDT-RH-----------NFYLVILVKAVDN-------KNQQGRAEEIFQRLS-- 115 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~-----------~f~~~~wv~~~~~-------~~~~~~~~~l~~~l~-- 115 (339)
...+++|+|+.|.|||++.+.++-...-- .+ .|+ .++...... .....-...+.+.++
T Consensus 29 ~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~-~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~ 107 (218)
T cd03286 29 SPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVD-RIFTRIGARDDIMKGESTFMVELSETANILRHA 107 (218)
T ss_pred CCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEecccc-EEEEecCcccccccCcchHHHHHHHHHHHHHhC
Confidence 35789999999999999988776552100 01 122 223332211 122222333334443
Q ss_pred CCceEEEEecCCC---CCCcccc----cCC-CC-CCceEEEeCCChHHHhhc
Q 039134 116 QRRFALLLDDLRG---PINLDEA----GVP-DQ-NGSKIVFTTIMEDACNTM 158 (339)
Q Consensus 116 ~k~~LlvlDdv~~---~~~l~~l----~~~-~~-~~~~ilvTsR~~~~~~~~ 158 (339)
.++.|+++|.... ..+-..+ ... .. .++.+|++|-...+....
T Consensus 108 ~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 108 TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred CCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 5789999999832 2221111 001 22 378899999987765443
No 437
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.69 E-value=0.03 Score=54.00 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=20.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
+.+.++|.|.+|+|||+||.....+
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~ 164 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILN 164 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHh
Confidence 5688999999999999996554443
No 438
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.69 E-value=0.02 Score=48.97 Aligned_cols=92 Identities=24% Similarity=0.224 Sum_probs=48.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHH-------HHHh-------------cC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEI-------FQRL-------------SQ 116 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l-------~~~l-------------~~ 116 (339)
..++++|.|++|+|||+++..+..... .. .+. +++ ..........+.+.. ...+ ..
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~-~~-g~~-v~~-~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~ 92 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALE-AA-GKR-VIG-LAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELP 92 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHH-HT-T---EEE-EESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-T
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHH-hC-CCe-EEE-ECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCC
Confidence 357899999999999999999888773 22 222 333 322222222222221 1111 12
Q ss_pred CceEEEEecCCCCC--CcccccCC-CCCCceEEEeCCCh
Q 039134 117 RRFALLLDDLRGPI--NLDEAGVP-DQNGSKIVFTTIME 152 (339)
Q Consensus 117 k~~LlvlDdv~~~~--~l~~l~~~-~~~~~~ilvTsR~~ 152 (339)
+.-++|+|++.... .+..+... ...++++|+.--..
T Consensus 93 ~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp STSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TT
T ss_pred cccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcc
Confidence 34699999997654 34443211 34577877765543
No 439
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.68 E-value=0.013 Score=51.72 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=22.4
Q ss_pred EEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 63 LYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 63 I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
|.||+|+||||+++.+.+... ..-..++.+++.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~---~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE---SNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT---TT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHH---hccCCceEEEcc
Confidence 689999999999999999984 222334555544
No 440
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.036 Score=55.33 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++++||+|.||||+|..+.+-+
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 55899999999999999999887765
No 441
>PRK12338 hypothetical protein; Provisional
Probab=95.68 E-value=0.01 Score=54.23 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.+|+|.|.+|+||||+|..++.++
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHC
Confidence 35799999999999999999999987
No 442
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.68 E-value=0.028 Score=52.59 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=26.2
Q ss_pred HHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 48 VWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 48 l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.+.+.. ....|+|+|+.|+||||++..++...
T Consensus 126 ~~~~~~~--~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 126 IIDAIAP--QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred HHHHHhc--cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444443 35899999999999999999988776
No 443
>PRK04182 cytidylate kinase; Provisional
Probab=95.68 E-value=0.0093 Score=49.78 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.7
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|+|.|+.|+||||+|+.++..+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999887
No 444
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.68 E-value=0.0086 Score=52.45 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..|+|.|++|+||||+|+.+++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 448999999999999999999886
No 445
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.67 E-value=0.012 Score=40.06 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.+|+|+.|+|||||...+.--+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999998776544
No 446
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.67 E-value=0.01 Score=49.85 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=22.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+++|+|++|+|||||++.++...
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3688999999999999999999987
No 447
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.67 E-value=0.011 Score=47.15 Aligned_cols=35 Identities=31% Similarity=0.436 Sum_probs=27.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|+|+.|+|||||.+.++.... ...+.+++
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~----~~~G~i~~ 44 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP----PDSGSILI 44 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH----ESEEEEEE
T ss_pred CCCEEEEEccCCCccccceeeeccccc----cccccccc
Confidence 347899999999999999998888762 23455544
No 448
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.67 E-value=0.084 Score=50.45 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.+|.++|++|+||||++..++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 449
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.66 E-value=0.067 Score=51.49 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=55.3
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec-------------CCCCHHHHHHHHH
Q 039134 45 LDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV-------------DNKNQQGRAEEIF 111 (339)
Q Consensus 45 ~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-------------~~~~~~~~~~~l~ 111 (339)
.+.+...+.. ..+.++++||.|+||||..-.+.+... .....++-+... +....-.....++
T Consensus 247 ~~~~~~~~~~--p~GliLvTGPTGSGKTTTLY~~L~~ln---~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LR 321 (500)
T COG2804 247 LARLLRLLNR--PQGLILVTGPTGSGKTTTLYAALSELN---TPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALR 321 (500)
T ss_pred HHHHHHHHhC--CCeEEEEeCCCCCCHHHHHHHHHHHhc---CCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHH
Confidence 3444454444 479999999999999999988888874 333334444433 1222234556778
Q ss_pred HHhcCCceEEEEecCCCCC
Q 039134 112 QRLSQRRFALLLDDLRGPI 130 (339)
Q Consensus 112 ~~l~~k~~LlvlDdv~~~~ 130 (339)
..|+..|=+|++..+.+.+
T Consensus 322 a~LRqDPDvImVGEIRD~E 340 (500)
T COG2804 322 AILRQDPDVIMVGEIRDLE 340 (500)
T ss_pred HHhccCCCeEEEeccCCHH
Confidence 8888889899998886554
No 450
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.66 E-value=0.047 Score=48.73 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=31.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+..+++|-|.+|+|||++|.+++.+.. . .+-..++|++..
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a-~-~~~~~vly~SlE 57 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAA-L-NGGYPVLYFSLE 57 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHH-H-TTSSEEEEEESS
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHH-H-hcCCeEEEEcCC
Confidence 457999999999999999999999884 2 222678888876
No 451
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.66 E-value=0.061 Score=54.01 Aligned_cols=27 Identities=37% Similarity=0.379 Sum_probs=23.8
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++...++|+|++|+|||||++.+....
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466899999999999999999888765
No 452
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=95.65 E-value=0.037 Score=57.86 Aligned_cols=151 Identities=18% Similarity=0.157 Sum_probs=80.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh-cccCCc-----------ceEEEEEecCCCC-------HHHHHHHHHHHhc--
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS-DTRHNF-----------YLVILVKAVDNKN-------QQGRAEEIFQRLS-- 115 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~f-----------~~~~wv~~~~~~~-------~~~~~~~l~~~l~-- 115 (339)
..++++|+||.+.||||+.++++--.- ..-+.| + .++..++...+ ...-...+.+.+.
T Consensus 606 ~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d-~I~triga~d~i~~g~STF~~E~~~~~~il~~a 684 (854)
T PRK05399 606 ERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVD-RIFTRIGASDDLASGRSTFMVEMTETANILNNA 684 (854)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccC-eeeeccCcccccccCcccHHHHHHHHHHHHHhC
Confidence 468999999999999999998765421 000222 2 12222221111 1112233334443
Q ss_pred CCceEEEEecCC---CCCCcccccC----C--CCCCceEEEeCCChHHHhhcC---CCceEEecCCCCcc-----CccCC
Q 039134 116 QRRFALLLDDLR---GPINLDEAGV----P--DQNGSKIVFTTIMEDACNTMG---DQIKFKVDYLRRDD-----DVLNF 178 (339)
Q Consensus 116 ~k~~LlvlDdv~---~~~~l~~l~~----~--~~~~~~ilvTsR~~~~~~~~~---~~~~~~l~~L~~~~-----~~~~~ 178 (339)
..+-|+|+|.+- +..+=..+.. . ...++.+|++|....+..... ...-+.+.....++ .....
T Consensus 685 t~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~~~~v~n~~m~~~~~~~~l~flYkl~~ 764 (854)
T PRK05399 685 TERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEKLPGVKNVHVAVKEHGGDIVFLHKVVP 764 (854)
T ss_pred CCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhhcCCeEEEEEEEEEeCCeEEEEEEeCc
Confidence 488999999983 2222111100 1 233688999998866543222 12223333222222 22233
Q ss_pred ChhHHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 039134 179 HPDILELAETVADLCRGLPLAHITIGRAMAN 209 (339)
Q Consensus 179 ~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~ 209 (339)
+.....++-.+++.+ |+|-.+...|..+..
T Consensus 765 G~~~~SyGi~VA~la-GlP~~VI~rA~~i~~ 794 (854)
T PRK05399 765 GAADKSYGIHVAKLA-GLPASVIKRAREILA 794 (854)
T ss_pred CCCCCcHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 334467777777766 789888877776544
No 453
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.65 E-value=0.024 Score=54.17 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...++|.|.+|+|||||.+.++...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC
Confidence 56899999999999999999998876
No 454
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.64 E-value=0.01 Score=49.18 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.5
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|.|.|++|+||||+|+.+++.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998876
No 455
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.63 E-value=0.029 Score=53.38 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....++|.|.+|+|||||++.++...
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~ 161 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT 161 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 55789999999999999998888765
No 456
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.056 Score=50.65 Aligned_cols=39 Identities=38% Similarity=0.484 Sum_probs=29.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+..+++|+|+.|+||||++..++.... . .. ..+.+++..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~-~g-~~V~lItaD 243 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-K-QN-RTVGFITTD 243 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H-cC-CeEEEEeCC
Confidence 568999999999999999999988763 2 22 345566554
No 457
>PRK15453 phosphoribulokinase; Provisional
Probab=95.62 E-value=0.011 Score=52.92 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+..+|+|.|.+|+||||+|+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998766
No 458
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.62 E-value=0.009 Score=51.58 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.4
Q ss_pred EEEEeCCCchHHHHHHHHHhhh
Q 039134 61 ICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
|+|.|++|+||||+|+.++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998876
No 459
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.62 E-value=0.045 Score=56.28 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.9
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++...++|+|+.|+|||||++.++...
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999999998766
No 460
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.62 E-value=0.012 Score=49.59 Aligned_cols=25 Identities=48% Similarity=0.604 Sum_probs=22.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.++|+||+|+||+||+..+++..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998886
No 461
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.59 E-value=0.025 Score=49.24 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=33.7
Q ss_pred HHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 48 VWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 48 l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+.+.+..+ +...++.|.|++|+|||+++.+++.... ..=..++|++..
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~---~~g~~~~y~s~e 53 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGL---KNGEKAMYISLE 53 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECC
Confidence 33444433 4568999999999999999999987753 223456677654
No 462
>PRK14528 adenylate kinase; Provisional
Probab=95.58 E-value=0.011 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.5
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.++|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998776
No 463
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.55 E-value=0.033 Score=53.45 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.+.++|.|.+|+|||+|+..++...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~ 167 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNI 167 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHH
Confidence 56889999999999999999988876
No 464
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.55 E-value=0.011 Score=49.20 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+.|+|++|+||||+++.+++.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999999987
No 465
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.55 E-value=0.033 Score=51.47 Aligned_cols=37 Identities=24% Similarity=0.193 Sum_probs=29.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+.+.++|.|+.|+|||+|+++++++. +-+.++++-+.
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iG 192 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCG 192 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeC
Confidence 55789999999999999999998875 23456666554
No 466
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.54 E-value=0.011 Score=50.00 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=22.3
Q ss_pred EEEEEeCCCchHHHHHHHHHhhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+|+|.|+.|+||||+++.+++.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999883
No 467
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.54 E-value=0.043 Score=56.51 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=49.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCH-----------HHHHHHHHHHhc-----CCceEEE
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQ-----------QGRAEEIFQRLS-----QRRFALL 122 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~-----------~~~~~~l~~~l~-----~k~~Llv 122 (339)
++++|.|.+|+||||+++.+..... . ..+. +.......... ......+..+.. .+.-|||
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~-~-~g~~--V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llI 444 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWE-A-AGYR--VIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLV 444 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHH-h-CCCe--EEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEE
Confidence 6889999999999999999987763 1 2232 22332211111 111111111111 2457999
Q ss_pred EecCCCCCC--cccccCC-CCCCceEEEeCCC
Q 039134 123 LDDLRGPIN--LDEAGVP-DQNGSKIVFTTIM 151 (339)
Q Consensus 123 lDdv~~~~~--l~~l~~~-~~~~~~ilvTsR~ 151 (339)
+|++..... +..+... ...++++|+.--.
T Consensus 445 vDEasMv~~~~~~~Ll~~~~~~~~kliLVGD~ 476 (744)
T TIGR02768 445 IDEAGMVGSRQMARVLKEAEEAGAKVVLVGDP 476 (744)
T ss_pred EECcccCCHHHHHHHHHHHHhcCCEEEEECCh
Confidence 999865532 3333221 3457887776643
No 468
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.54 E-value=0.017 Score=49.72 Aligned_cols=101 Identities=18% Similarity=0.135 Sum_probs=53.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcc-cCC-----------cceEEEEEecCCCCH----HHHH---HHHHHH--hc
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDT-RHN-----------FYLVILVKAVDNKNQ----QGRA---EEIFQR--LS 115 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~-----------f~~~~wv~~~~~~~~----~~~~---~~l~~~--l~ 115 (339)
...+++|.|+.|.||||+.+.++.-..-. -.. |+. ++.......+. .... ..+... +.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~-I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~ 106 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNR-LLSRLSNDDSMERNLSTFASEMSETAYILDYA 106 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhh-eeEecCCccccchhhhHHHHHHHHHHHHHHhc
Confidence 34889999999999999988776322100 011 111 11111111111 1111 112222 23
Q ss_pred CCceEEEEecCCCCC-Ccc------cccCC-CCCCceEEEeCCChHHHhhc
Q 039134 116 QRRFALLLDDLRGPI-NLD------EAGVP-DQNGSKIVFTTIMEDACNTM 158 (339)
Q Consensus 116 ~k~~LlvlDdv~~~~-~l~------~l~~~-~~~~~~ilvTsR~~~~~~~~ 158 (339)
.++-|+++|....-. ..+ .+... ...++.+|++|-........
T Consensus 107 ~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 107 DGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAIL 157 (204)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 578899999984322 111 11111 34488899999987765543
No 469
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.53 E-value=0.045 Score=51.96 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=22.4
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+++++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999765
No 470
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.53 E-value=0.019 Score=51.60 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=51.6
Q ss_pred ccchhhhhhccccccccccccCccccccccCccccccchhHHHHHHH------HHhhcCCCcEEEEEEeCCCchHHHHHH
Q 039134 3 SVGDIWNVVKDCFLCSFYLYSNSRDLKDKVDTLSVKKGMESILDEVW------ECFEDDFPMRIICLYGVSGVGKTTLLV 76 (339)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~------~~l~~~~~~~~v~I~G~~GiGKTtLa~ 76 (339)
..|.|+||+-+-.--.+ .--++..++.-...|.|+-...+.+-+. ++|..-.+..-|.+.|-+|+|||.|..
T Consensus 132 tLGRI~NViGePiDerG--pi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlIm 209 (521)
T KOG1350|consen 132 TLGRIMNVIGEPIDERG--PIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIM 209 (521)
T ss_pred HHhhHHHhcCCcccccC--CcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCccceeeHH
Confidence 35889999876544333 2222223333334455655554444332 222221345789999999999999999
Q ss_pred HHHhhhhcccCCcc
Q 039134 77 NFNSKFSDTRHNFY 90 (339)
Q Consensus 77 ~~~~~~~~~~~~f~ 90 (339)
++.++..+....|.
T Consensus 210 ELINNiAKaHGGyS 223 (521)
T KOG1350|consen 210 ELINNIAKAHGGYS 223 (521)
T ss_pred HHHHHHHHhcCCeE
Confidence 99998864344443
No 471
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.02 Score=51.07 Aligned_cols=89 Identities=24% Similarity=0.306 Sum_probs=56.9
Q ss_pred cccchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--CCCC
Q 039134 37 VKKGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--DNKN 102 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~~ 102 (339)
.+=|-+..+++|.+...-+ ..+.-|.++|++|.|||-||+.+++.-+ ..|--++=-.+. .--+
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS---ATFlRvvGseLiQkylGd 262 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS---ATFLRVVGSELIQKYLGD 262 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc---hhhhhhhhHHHHHHHhcc
Confidence 3467899999998876532 4678899999999999999999999874 334211100000 0111
Q ss_pred HHHHHHHHHHHhc-CCceEEEEecCCC
Q 039134 103 QQGRAEEIFQRLS-QRRFALLLDDLRG 128 (339)
Q Consensus 103 ~~~~~~~l~~~l~-~k~~LlvlDdv~~ 128 (339)
...++..+++... ..+.++++|.++.
T Consensus 263 GpklvRqlF~vA~e~apSIvFiDEIdA 289 (440)
T KOG0726|consen 263 GPKLVRELFRVAEEHAPSIVFIDEIDA 289 (440)
T ss_pred chHHHHHHHHHHHhcCCceEEeehhhh
Confidence 2234445555443 4678888898753
No 472
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.52 E-value=0.053 Score=54.37 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++...++|+|++|+|||||++.++...
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 356889999999999999999998776
No 473
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.52 E-value=0.011 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.|+|+|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999886
No 474
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=95.52 E-value=0.039 Score=53.42 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=21.3
Q ss_pred CcEEEEEEeCCCchHHHHHH-HHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLV-NFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~-~~~~~~ 82 (339)
+.+.++|.|.+|+|||+||. .++++.
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~ 187 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQK 187 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhc
Confidence 56889999999999999974 566653
No 475
>PRK02496 adk adenylate kinase; Provisional
Probab=95.51 E-value=0.011 Score=49.84 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=21.1
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|.|++|+||||+|+.++..+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 476
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.50 E-value=0.063 Score=44.87 Aligned_cols=38 Identities=32% Similarity=0.316 Sum_probs=29.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
...+++|.|++|.|||||...++-.. .--.+.+|+...
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~----~P~~G~i~i~g~ 61 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFE----TPASGEILINGV 61 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhcc----CCCCceEEEcCe
Confidence 45789999999999999999887665 233466777543
No 477
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.50 E-value=0.04 Score=51.76 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=47.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec------------------CCCCHHHHHHHHHHHhcCCce
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------------------DNKNQQGRAEEIFQRLSQRRF 119 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------------------~~~~~~~~~~~l~~~l~~k~~ 119 (339)
...++|+|+.|+||||++..+++........ ..++-+... -..+.......++..|+..+=
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~-~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD 227 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPD-RKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPK 227 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCC-ceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCC
Confidence 3678999999999999999988766311100 112222111 011223445566777778888
Q ss_pred EEEEecCCCCCCccc
Q 039134 120 ALLLDDLRGPINLDE 134 (339)
Q Consensus 120 LlvlDdv~~~~~l~~ 134 (339)
.|+++.+.+.+....
T Consensus 228 ~I~vGEiRd~et~~~ 242 (372)
T TIGR02525 228 IIGVGEIRDLETFQA 242 (372)
T ss_pred EEeeCCCCCHHHHHH
Confidence 888888877665543
No 478
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.50 E-value=0.036 Score=53.29 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=23.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..+.++|.|.+|+|||||+..++....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~ 169 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA 169 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH
Confidence 568899999999999999999887763
No 479
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.48 E-value=0.0085 Score=62.47 Aligned_cols=152 Identities=14% Similarity=0.046 Sum_probs=83.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccC-CcceEEEEEec-----------------------CCCCHHHHHHHHHH
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRH-NFYLVILVKAV-----------------------DNKNQQGRAEEIFQ 112 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~-----------------------~~~~~~~~~~~l~~ 112 (339)
...-+.|+|.+|+||||+.+.++-....... .=+..+++.+. ..............
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e 300 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQE 300 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHH
Confidence 4458899999999999999999887741111 11223333333 11111112222234
Q ss_pred HhcCCceEEEEecCCCCCC------cccc--cCCCCCCceEEEeCCChHHHhhcCCCceEEecCCCCcc-----------
Q 039134 113 RLSQRRFALLLDDLRGPIN------LDEA--GVPDQNGSKIVFTTIMEDACNTMGDQIKFKVDYLRRDD----------- 173 (339)
Q Consensus 113 ~l~~k~~LlvlDdv~~~~~------l~~l--~~~~~~~~~ilvTsR~~~~~~~~~~~~~~~l~~L~~~~----------- 173 (339)
.++..++++++|.++.... ...+ ..+.-+.+++|+|+|....-.....-...++..+.+..
T Consensus 301 ~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~ 380 (824)
T COG5635 301 LLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLD 380 (824)
T ss_pred HHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHH
Confidence 5677889999999875532 1112 12256688999999986554333333344455554444
Q ss_pred ----CccCCChhH--------HHHHHHHHHHcCCChHHHHHHHHHhc
Q 039134 174 ----DVLNFHPDI--------LELAETVADLCRGLPLAHITIGRAMA 208 (339)
Q Consensus 174 ----~~~~~~~~~--------~~~~~~i~~~~~G~Plal~~~~~~L~ 208 (339)
......+.. ..-....++.....|+.|.+.+..-.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 381 AFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 111111111 11122345555888999998885444
No 480
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.46 E-value=0.025 Score=54.01 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....++|.|.+|+|||||++.++...
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~ 179 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP 179 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC
Confidence 56899999999999999998888765
No 481
>PRK08356 hypothetical protein; Provisional
Probab=95.45 E-value=0.013 Score=49.87 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHH
Q 039134 58 MRIICLYGVSGVGKTTLLVNFN 79 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~ 79 (339)
..+++|+|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999984
No 482
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.45 E-value=0.014 Score=48.38 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+.|+++|+.|+||||+.+.+++.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC
Confidence 5689999999999999999999984
No 483
>PRK01184 hypothetical protein; Provisional
Probab=95.44 E-value=0.012 Score=49.58 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=18.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+|+|+|++|+||||+++ +++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc
Confidence 478999999999999987 44443
No 484
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.058 Score=51.45 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++++|+.|+||||++..++...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999888764
No 485
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.43 E-value=0.02 Score=49.28 Aligned_cols=35 Identities=26% Similarity=0.162 Sum_probs=27.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||++.++-.. ....+.+++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~ 59 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII----LPDSGEVLF 59 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 45889999999999999999999775 234555655
No 486
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=95.43 E-value=0.05 Score=55.71 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=24.1
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++...++|+|++|+|||||++.++.-.
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999999999999998776
No 487
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.42 E-value=0.0061 Score=53.67 Aligned_cols=145 Identities=19% Similarity=0.247 Sum_probs=69.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhccc-CC-----------cceEEEEEecCCC-------CHHHHHHHHHHHh--cCC
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTR-HN-----------FYLVILVKAVDNK-------NQQGRAEEIFQRL--SQR 117 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~-----------f~~~~wv~~~~~~-------~~~~~~~~l~~~l--~~k 117 (339)
++++|+|+...||||+.+.++...---+ +. |+. ++....... ....-...+.+.+ ..+
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~-I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~ 122 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDR-IFTRIGDDDSIESGLSTFMAEMKRLSSILRNATE 122 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SE-EEEEES---SSTTSSSHHHHHHHHHHHHHHH--T
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccE-EEeecccccccccccccHHHhHHHHHhhhhhccc
Confidence 7999999999999999998876441000 11 222 233332111 1122223333333 357
Q ss_pred ceEEEEecCCCCCC-----------cccccCCCCCCceEEEeCCChHHHhhcC---CCceEEecCCCCcc-----CccCC
Q 039134 118 RFALLLDDLRGPIN-----------LDEAGVPDQNGSKIVFTTIMEDACNTMG---DQIKFKVDYLRRDD-----DVLNF 178 (339)
Q Consensus 118 ~~LlvlDdv~~~~~-----------l~~l~~~~~~~~~ilvTsR~~~~~~~~~---~~~~~~l~~L~~~~-----~~~~~ 178 (339)
+.|+++|.+-.-.. ++.+. ...++.+++||....+..... ....+.+.....++ .....
T Consensus 123 ~sLvliDE~g~gT~~~eg~ai~~aile~l~--~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~~ 200 (235)
T PF00488_consen 123 KSLVLIDELGRGTNPEEGIAIAIAILEYLL--EKSGCFVIIATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLKE 200 (235)
T ss_dssp TEEEEEESTTTTSSHHHHHHHHHHHHHHHH--HTTT-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ceeeecccccCCCChhHHHHHHHHHHHHHH--HhccccEEEEeccchhHHHhhhCccccccceeeeeeccccceeEEEeE
Confidence 88999999954422 11111 225889999999877643321 11223333222222 11111
Q ss_pred ChhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039134 179 HPDILELAETVADLCRGLPLAHITIGRAM 207 (339)
Q Consensus 179 ~~~~~~~~~~i~~~~~G~Plal~~~~~~L 207 (339)
.......+-.+++.+ |+|-.+..-|..+
T Consensus 201 G~~~~S~ai~iA~~~-g~p~~II~rA~~i 228 (235)
T PF00488_consen 201 GICSSSYAIEIAKLA-GLPEEIIERAKEI 228 (235)
T ss_dssp S--SSTCHHHHHHHT-T--HHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHh-CcCHHHHHHHHHH
Confidence 112244555666655 6777665555543
No 488
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.42 E-value=0.053 Score=43.82 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=31.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+.-++.|.||+|+|||||..-+.-.+ ...-.|.+.+|+...
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~L-a~~F~~~G~~~l~~~ 67 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGAL-AGQFSCTGELWLNEQ 67 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhc-ccCcceeeEEEECCe
Confidence 44789999999999999998888777 333344577888644
No 489
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.40 E-value=0.018 Score=47.21 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=25.4
Q ss_pred EEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEE
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVIL 94 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~w 94 (339)
++.|+|+.|+|||||+..+...+. . ..+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~-~-~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK-A-RGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH-h-cCCeEEEE
Confidence 478999999999999999999873 2 34544333
No 490
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.025 Score=52.49 Aligned_cols=83 Identities=14% Similarity=0.218 Sum_probs=53.3
Q ss_pred ccchhHHHHHHHHHhhcC-----------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec------C-
Q 039134 38 KKGMESILDEVWECFEDD-----------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------D- 99 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------~- 99 (339)
+.|-++..+-|.+...-+ ...+-|+++||+|.|||-||+.|+.... -.| ++++ .
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~---tTF-----FNVSsstltSKw 285 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG---TTF-----FNVSSSTLTSKW 285 (491)
T ss_pred hcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc---CeE-----EEechhhhhhhh
Confidence 477777777776665432 4568999999999999999999999873 222 2332 0
Q ss_pred CCCHHHHHHHHHHHhc-CCceEEEEecCCC
Q 039134 100 NKNQQGRAEEIFQRLS-QRRFALLLDDLRG 128 (339)
Q Consensus 100 ~~~~~~~~~~l~~~l~-~k~~LlvlDdv~~ 128 (339)
.-.-+.++..|+...+ .-+..|+||.+++
T Consensus 286 RGeSEKlvRlLFemARfyAPStIFiDEIDs 315 (491)
T KOG0738|consen 286 RGESEKLVRLLFEMARFYAPSTIFIDEIDS 315 (491)
T ss_pred ccchHHHHHHHHHHHHHhCCceeehhhHHH
Confidence 0112334444444333 3577888888754
No 491
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.40 E-value=0.086 Score=51.51 Aligned_cols=88 Identities=23% Similarity=0.228 Sum_probs=54.6
Q ss_pred cchhHHH-HHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec-------------CCCCHH
Q 039134 39 KGMESIL-DEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV-------------DNKNQQ 104 (339)
Q Consensus 39 vGR~~~~-~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-------------~~~~~~ 104 (339)
.|-..+. +.+...+.. ..++++|+|+.|+||||+...+.+..... . ..++-+... ......
T Consensus 224 Lg~~~~~~~~l~~~~~~--~~GlilitGptGSGKTTtL~a~L~~l~~~--~-~~iiTiEDpvE~~~~~~~q~~v~~~~g~ 298 (486)
T TIGR02533 224 LGMSPELLSRFERLIRR--PHGIILVTGPTGSGKTTTLYAALSRLNTP--E-RNILTVEDPVEYQIEGIGQIQVNPKIGL 298 (486)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHHHHHHhccCCC--C-CcEEEEcCCeeeecCCCceEEEccccCc
Confidence 5554443 344444433 35799999999999999999888776311 1 112222111 111113
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCCCC
Q 039134 105 GRAEEIFQRLSQRRFALLLDDLRGPIN 131 (339)
Q Consensus 105 ~~~~~l~~~l~~k~~LlvlDdv~~~~~ 131 (339)
.....++..|+..+=.|++..+.+.+-
T Consensus 299 ~f~~~lr~~LR~dPDvI~vGEiRd~et 325 (486)
T TIGR02533 299 TFAAGLRAILRQDPDIIMVGEIRDLET 325 (486)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCHHH
Confidence 455677788888899999999977653
No 492
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.39 E-value=0.015 Score=49.44 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.6
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...|+|.|+.|+||||+++.+++.+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999884
No 493
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.38 E-value=0.085 Score=49.53 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=25.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+.+++.++||.|+||||-...++.++....+... +..++..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~k-VaiITtD 242 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKK-VAIITTD 242 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcc-eEEEEec
Confidence 4799999999999998544444444422233333 4445443
No 494
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.017 Score=47.24 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.1
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5899999999999999988777765
No 495
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.38 E-value=0.037 Score=52.87 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...++|.|++|+|||||++.++...
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc
Confidence 56889999999999999999887764
No 496
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.37 E-value=0.021 Score=49.48 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=27.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||++.++-.. ....+.+++
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~ 63 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD----RPTSGEVRV 63 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc----CCCceeEEE
Confidence 45899999999999999999998775 233455554
No 497
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.37 E-value=0.032 Score=54.78 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=39.3
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhcCCceEEEEecCCCC
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLSQRRFALLLDDLRGP 129 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~ 129 (339)
....+|+++|.+|+||||+|+.++... . ..+++...............+.|+..+. +|+|+....
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~-----g---~~~vn~D~lg~~~~~~~~a~~~L~~G~s-VVIDaTn~~ 431 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPA-----G---YKHVNADTLGSTQNCLTACERALDQGKR-CAIDNTNPD 431 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHc-----C---CeEECcHHHHHHHHHHHHHHHHHhCCCc-EEEECCCCC
Confidence 367899999999999999999988764 1 1222111111122233444455554433 577888644
No 498
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.36 E-value=0.066 Score=53.02 Aligned_cols=27 Identities=37% Similarity=0.388 Sum_probs=23.9
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++...++|+|++|+|||||++.++...
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999999998765
No 499
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.36 E-value=0.082 Score=53.14 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++...++|+|++|+|||||++.++...
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456899999999999999999998776
No 500
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.36 E-value=0.021 Score=49.44 Aligned_cols=35 Identities=26% Similarity=0.159 Sum_probs=27.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||++.++-.. ....+.+++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~ 62 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE----KPTRGKIRF 62 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 45899999999999999999998875 233455554
Done!