Query 039134
Match_columns 339
No_of_seqs 161 out of 1799
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 10:49:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-43 6.1E-48 347.5 15.1 279 33-321 125-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-37 7.9E-42 329.6 23.7 273 31-320 119-453 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 4.7E-35 1.6E-39 290.2 21.0 267 32-317 120-450 (591)
4 1vt4_I APAF-1 related killer D 100.0 1.4E-35 4.9E-40 299.7 15.1 253 36-312 128-436 (1221)
5 2qen_A Walker-type ATPase; unk 99.7 1.1E-16 3.8E-21 147.4 14.8 254 34-313 10-349 (350)
6 2fna_A Conserved hypothetical 99.7 2.9E-16 1E-20 144.9 14.7 249 34-312 11-356 (357)
7 1w5s_A Origin recognition comp 99.6 3.8E-15 1.3E-19 140.4 8.5 267 35-308 21-387 (412)
8 1njg_A DNA polymerase III subu 99.4 5.3E-12 1.8E-16 109.3 12.7 173 34-207 21-231 (250)
9 1fnn_A CDC6P, cell division co 99.3 1.7E-10 5.8E-15 107.5 22.5 252 35-296 16-353 (389)
10 2qby_A CDC6 homolog 1, cell di 99.3 6.5E-12 2.2E-16 116.8 12.1 254 35-295 19-349 (386)
11 2chg_A Replication factor C sm 99.3 1.4E-11 4.7E-16 105.3 13.0 168 35-205 16-205 (226)
12 2qby_B CDC6 homolog 3, cell di 99.3 2.4E-11 8.2E-16 113.3 15.5 252 35-295 19-340 (384)
13 2v1u_A Cell division control p 99.3 1.5E-11 5.2E-16 114.4 10.8 253 35-295 18-352 (387)
14 1sxj_B Activator 1 37 kDa subu 99.2 9.4E-11 3.2E-15 106.4 11.3 171 32-205 17-211 (323)
15 1hqc_A RUVB; extended AAA-ATPa 99.1 1.1E-10 3.8E-15 106.3 6.9 166 33-208 9-215 (324)
16 1iqp_A RFCS; clamp loader, ext 99.0 6.8E-10 2.3E-14 100.9 9.2 171 34-207 23-215 (327)
17 1jbk_A CLPB protein; beta barr 99.0 1.4E-09 4.9E-14 90.4 8.7 94 35-129 21-127 (195)
18 2chq_A Replication factor C sm 99.0 3.2E-09 1.1E-13 96.1 11.2 170 34-206 15-206 (319)
19 1jr3_A DNA polymerase III subu 99.0 4.5E-09 1.5E-13 97.3 12.1 172 34-206 14-223 (373)
20 3pfi_A Holliday junction ATP-d 98.9 1.6E-08 5.4E-13 92.6 11.9 166 33-206 26-229 (338)
21 3pvs_A Replication-associated 98.7 2E-07 7E-12 88.6 15.0 167 31-205 21-216 (447)
22 1sxj_D Activator 1 41 kDa subu 98.7 2.9E-08 1E-12 91.1 7.8 169 33-203 34-234 (353)
23 3bos_A Putative DNA replicatio 98.7 3.1E-08 1.1E-12 85.6 6.9 161 36-204 28-217 (242)
24 3h4m_A Proteasome-activating n 98.6 7.7E-08 2.6E-12 85.8 8.9 88 35-128 16-121 (285)
25 1sxj_A Activator 1 95 kDa subu 98.6 5.5E-08 1.9E-12 94.4 8.3 166 34-205 37-254 (516)
26 2p65_A Hypothetical protein PF 98.6 4.4E-08 1.5E-12 81.0 6.5 94 35-129 21-127 (187)
27 3u61_B DNA polymerase accessor 98.6 1.2E-07 4.1E-12 86.2 9.8 163 32-201 22-213 (324)
28 2qz4_A Paraplegin; AAA+, SPG7, 98.6 7.3E-07 2.5E-11 78.2 13.7 88 36-129 6-110 (262)
29 1sxj_E Activator 1 40 kDa subu 98.5 5.2E-07 1.8E-11 82.9 9.5 173 32-205 10-238 (354)
30 3eie_A Vacuolar protein sortin 98.4 1.9E-06 6.4E-11 78.3 12.6 164 36-205 18-229 (322)
31 3b9p_A CG5977-PA, isoform A; A 98.4 3.1E-06 1.1E-10 75.7 13.9 161 36-205 21-234 (297)
32 3d8b_A Fidgetin-like protein 1 98.4 1.9E-06 6.5E-11 79.5 12.4 165 36-206 84-297 (357)
33 1sxj_C Activator 1 40 kDa subu 98.4 1.2E-06 4.1E-11 80.2 10.6 167 32-201 21-209 (340)
34 1xwi_A SKD1 protein; VPS4B, AA 98.4 5.9E-06 2E-10 75.1 14.6 165 36-205 12-224 (322)
35 2z4s_A Chromosomal replication 98.4 3E-07 1E-11 87.3 6.1 163 38-203 107-305 (440)
36 3te6_A Regulatory protein SIR3 98.4 1.5E-06 5.3E-11 78.5 10.3 93 37-130 21-145 (318)
37 2qp9_X Vacuolar protein sortin 98.4 3.2E-06 1.1E-10 77.9 12.6 164 36-205 51-262 (355)
38 3vfd_A Spastin; ATPase, microt 98.4 5.1E-06 1.7E-10 77.5 14.0 164 36-205 115-327 (389)
39 3syl_A Protein CBBX; photosynt 98.4 2.4E-06 8.1E-11 76.9 11.2 90 37-129 32-142 (309)
40 3uk6_A RUVB-like 2; hexameric 98.3 2.2E-06 7.5E-11 79.1 10.9 48 35-82 43-94 (368)
41 1d2n_A N-ethylmaleimide-sensit 98.3 8.2E-07 2.8E-11 78.6 7.6 87 36-128 33-135 (272)
42 3n70_A Transport activator; si 98.3 9E-07 3.1E-11 70.7 6.9 108 37-151 2-115 (145)
43 1a5t_A Delta prime, HOLB; zinc 98.3 6.4E-06 2.2E-10 75.2 12.3 157 42-202 8-203 (334)
44 1l8q_A Chromosomal replication 98.3 1.3E-06 4.4E-11 79.4 7.2 150 44-201 22-205 (324)
45 2zan_A Vacuolar protein sortin 98.2 1.7E-05 6E-10 75.2 14.7 164 36-205 134-346 (444)
46 1qvr_A CLPB protein; coiled co 98.2 2.5E-06 8.5E-11 87.7 9.5 94 35-129 169-275 (854)
47 2w58_A DNAI, primosome compone 98.2 3.4E-06 1.2E-10 71.0 8.1 106 42-152 35-159 (202)
48 2gno_A DNA polymerase III, gam 98.1 6E-06 2.1E-10 74.4 8.9 131 40-173 1-143 (305)
49 3ec2_A DNA replication protein 98.1 2.3E-06 7.9E-11 70.7 5.1 104 40-152 18-143 (180)
50 3hu3_A Transitional endoplasmi 98.1 5.1E-06 1.7E-10 79.8 8.0 85 37-127 205-307 (489)
51 3pxg_A Negative regulator of g 98.1 1.4E-05 4.8E-10 76.4 10.7 47 35-82 179-225 (468)
52 2r62_A Cell division protease 98.1 1.4E-06 4.8E-11 76.8 3.3 47 36-82 11-68 (268)
53 1in4_A RUVB, holliday junction 98.1 3.1E-05 1.1E-09 70.6 11.8 165 33-205 22-224 (334)
54 4b4t_L 26S protease subunit RP 98.0 1.8E-05 6E-10 74.6 9.5 87 37-129 182-286 (437)
55 3cf0_A Transitional endoplasmi 98.0 1.1E-05 3.9E-10 72.4 7.9 87 36-128 15-119 (301)
56 4b4t_J 26S protease regulatory 98.0 1.5E-05 5.1E-10 74.0 8.7 87 37-129 149-253 (405)
57 3pxi_A Negative regulator of g 97.9 2.9E-05 1E-09 78.7 10.4 47 35-82 179-225 (758)
58 4b4t_M 26S protease regulatory 97.9 1.7E-05 5.8E-10 74.6 7.7 85 37-127 182-284 (434)
59 4b4t_K 26S protease regulatory 97.9 2.6E-05 8.7E-10 73.3 8.7 85 37-127 173-275 (428)
60 2kjq_A DNAA-related protein; s 97.9 5.3E-06 1.8E-10 66.6 3.4 77 38-130 20-96 (149)
61 1lv7_A FTSH; alpha/beta domain 97.9 4.1E-05 1.4E-09 66.9 9.4 86 35-127 11-114 (257)
62 1r6b_X CLPA protein; AAA+, N-t 97.9 4.6E-05 1.6E-09 77.2 11.1 93 36-129 186-290 (758)
63 4b4t_H 26S protease regulatory 97.9 2.9E-05 1E-09 73.1 8.9 87 37-129 210-314 (467)
64 4b4t_I 26S protease regulatory 97.9 3.5E-05 1.2E-09 72.0 9.0 86 38-129 184-287 (437)
65 3co5_A Putative two-component 97.8 1.3E-05 4.5E-10 63.7 4.1 104 37-151 5-115 (143)
66 3t15_A Ribulose bisphosphate c 97.8 4.7E-05 1.6E-09 68.1 8.1 67 56-128 34-110 (293)
67 1ofh_A ATP-dependent HSL prote 97.8 3.6E-05 1.2E-09 68.9 7.3 88 36-129 15-128 (310)
68 4fcw_A Chaperone protein CLPB; 97.8 5.4E-05 1.9E-09 67.9 8.1 48 36-83 17-72 (311)
69 3cf2_A TER ATPase, transitiona 97.7 5.9E-05 2E-09 76.2 7.3 87 37-129 205-309 (806)
70 2c9o_A RUVB-like 1; hexameric 97.6 0.00022 7.6E-09 67.8 10.5 89 36-128 37-137 (456)
71 2ce7_A Cell division protein F 97.6 0.00016 5.4E-09 69.0 9.1 88 36-129 16-120 (476)
72 2x8a_A Nuclear valosin-contain 97.6 0.00023 8E-09 62.9 8.6 86 37-128 11-114 (274)
73 2vhj_A Ntpase P4, P4; non- hyd 97.5 9.9E-05 3.4E-09 66.4 5.7 66 57-129 122-194 (331)
74 3pxi_A Negative regulator of g 97.5 0.00024 8.4E-09 71.9 9.2 91 36-130 491-592 (758)
75 1ixz_A ATP-dependent metallopr 97.5 0.00031 1E-08 61.1 8.6 86 36-127 16-118 (254)
76 1iy2_A ATP-dependent metallopr 97.4 0.00054 1.8E-08 60.5 9.5 87 35-127 39-142 (278)
77 1ypw_A Transitional endoplasmi 97.4 0.00016 5.5E-09 73.6 5.7 87 36-128 204-308 (806)
78 1um8_A ATP-dependent CLP prote 97.3 0.00057 2E-08 63.1 8.8 47 36-82 21-96 (376)
79 2qgz_A Helicase loader, putati 97.3 0.00015 5.1E-09 65.3 4.3 42 41-82 133-176 (308)
80 2dhr_A FTSH; AAA+ protein, hex 97.3 0.00078 2.7E-08 64.6 9.2 87 36-128 31-134 (499)
81 2r44_A Uncharacterized protein 97.3 0.00019 6.4E-09 65.1 4.6 45 35-82 26-70 (331)
82 3hr8_A Protein RECA; alpha and 97.2 0.0014 4.8E-08 60.0 9.5 79 47-128 48-150 (356)
83 3nbx_X ATPase RAVA; AAA+ ATPas 97.1 0.00034 1.2E-08 67.2 4.8 44 36-82 22-65 (500)
84 1rz3_A Hypothetical protein rb 97.1 0.00066 2.3E-08 56.9 6.1 43 40-82 2-46 (201)
85 2bjv_A PSP operon transcriptio 97.1 0.00035 1.2E-08 61.2 4.4 47 37-83 7-54 (265)
86 1jr3_D DNA polymerase III, del 97.1 0.009 3.1E-07 54.2 13.5 154 48-204 9-185 (343)
87 3io5_A Recombination and repai 97.0 0.0037 1.3E-07 56.0 10.2 38 60-98 30-67 (333)
88 2zr9_A Protein RECA, recombina 97.0 0.0025 8.4E-08 58.3 8.7 70 56-128 59-150 (349)
89 1ojl_A Transcriptional regulat 96.9 0.00081 2.8E-08 60.3 5.3 46 37-82 3-49 (304)
90 3cf2_A TER ATPase, transitiona 96.9 0.0016 5.5E-08 65.8 7.9 83 37-128 478-581 (806)
91 1g8p_A Magnesium-chelatase 38 96.9 0.0004 1.4E-08 63.2 3.2 46 36-82 24-69 (350)
92 1xp8_A RECA protein, recombina 96.9 0.0031 1.1E-07 58.0 8.9 69 57-128 73-163 (366)
93 3jvv_A Twitching mobility prot 96.9 0.00088 3E-08 61.5 5.2 94 58-153 123-232 (356)
94 3hws_A ATP-dependent CLP prote 96.9 0.00084 2.9E-08 61.7 5.0 46 37-82 16-75 (363)
95 3c8u_A Fructokinase; YP_612366 96.9 0.00093 3.2E-08 56.3 4.8 40 43-82 6-46 (208)
96 2cvh_A DNA repair and recombin 96.9 0.003 1E-07 53.2 8.0 37 56-98 18-54 (220)
97 1qhx_A CPT, protein (chloramph 96.8 0.0006 2E-08 55.6 3.2 25 58-82 3-27 (178)
98 1u94_A RECA protein, recombina 96.8 0.0034 1.2E-07 57.6 8.3 40 56-98 61-100 (356)
99 3sr0_A Adenylate kinase; phosp 96.7 0.003 1E-07 53.2 6.9 23 60-82 2-24 (206)
100 3kb2_A SPBC2 prophage-derived 96.7 0.00084 2.9E-08 54.3 3.3 24 59-82 2-25 (173)
101 3ice_A Transcription terminati 96.7 0.007 2.4E-07 55.7 9.5 36 48-83 164-199 (422)
102 1gvn_B Zeta; postsegregational 96.7 0.0016 5.5E-08 57.9 5.3 27 56-82 31-57 (287)
103 1qvr_A CLPB protein; coiled co 96.7 0.0024 8.2E-08 65.5 7.2 47 37-83 559-613 (854)
104 2rhm_A Putative kinase; P-loop 96.7 0.0011 3.9E-08 54.6 4.0 26 57-82 4-29 (193)
105 1tue_A Replication protein E1; 96.7 0.0013 4.4E-08 55.2 4.2 44 39-82 39-82 (212)
106 3vaa_A Shikimate kinase, SK; s 96.7 0.00092 3.2E-08 55.8 3.3 26 57-82 24-49 (199)
107 1zp6_A Hypothetical protein AT 96.6 0.0012 4.1E-08 54.5 3.7 26 57-82 8-33 (191)
108 1ly1_A Polynucleotide kinase; 96.6 0.0011 3.8E-08 53.9 3.5 22 59-80 3-24 (181)
109 3uie_A Adenylyl-sulfate kinase 96.6 0.0013 4.5E-08 54.9 3.9 26 57-82 24-49 (200)
110 3k1j_A LON protease, ATP-depen 96.6 0.0014 4.7E-08 64.6 4.5 50 30-82 35-84 (604)
111 3trf_A Shikimate kinase, SK; a 96.6 0.0011 3.7E-08 54.5 3.2 25 58-82 5-29 (185)
112 3lw7_A Adenylate kinase relate 96.6 0.0011 3.7E-08 53.5 3.1 23 59-82 2-24 (179)
113 1nks_A Adenylate kinase; therm 96.6 0.0013 4.5E-08 54.1 3.7 25 59-83 2-26 (194)
114 1v5w_A DMC1, meiotic recombina 96.6 0.011 3.7E-07 53.8 10.0 49 56-104 120-171 (343)
115 3tlx_A Adenylate kinase 2; str 96.5 0.0025 8.5E-08 55.1 5.2 43 40-82 10-53 (243)
116 3tau_A Guanylate kinase, GMP k 96.5 0.0014 4.7E-08 55.3 3.3 26 57-82 7-32 (208)
117 1kgd_A CASK, peripheral plasma 96.5 0.0013 4.6E-08 53.9 3.2 25 58-82 5-29 (180)
118 2p5t_B PEZT; postsegregational 96.5 0.0022 7.6E-08 55.7 4.7 27 56-82 30-56 (253)
119 2c95_A Adenylate kinase 1; tra 96.5 0.0016 5.6E-08 53.8 3.6 26 57-82 8-33 (196)
120 1odf_A YGR205W, hypothetical 3 96.5 0.0034 1.2E-07 55.8 5.8 28 56-83 29-56 (290)
121 1kag_A SKI, shikimate kinase I 96.5 0.0012 4.2E-08 53.5 2.7 24 59-82 5-28 (173)
122 3iij_A Coilin-interacting nucl 96.5 0.0014 4.6E-08 53.7 2.9 25 58-82 11-35 (180)
123 1kht_A Adenylate kinase; phosp 96.5 0.0016 5.4E-08 53.6 3.3 24 59-82 4-27 (192)
124 3t61_A Gluconokinase; PSI-biol 96.5 0.0013 4.4E-08 55.0 2.7 25 58-82 18-42 (202)
125 1knq_A Gluconate kinase; ALFA/ 96.4 0.002 7E-08 52.3 3.8 26 57-82 7-32 (175)
126 4eun_A Thermoresistant glucoki 96.4 0.0016 5.5E-08 54.4 3.3 26 57-82 28-53 (200)
127 1tev_A UMP-CMP kinase; ploop, 96.4 0.0018 6.3E-08 53.3 3.6 25 58-82 3-27 (196)
128 3m6a_A ATP-dependent protease 96.4 0.0032 1.1E-07 61.1 5.8 46 37-82 82-132 (543)
129 2hf9_A Probable hydrogenase ni 96.4 0.0039 1.3E-07 52.8 5.7 40 42-82 23-62 (226)
130 2zts_A Putative uncharacterize 96.4 0.0041 1.4E-07 53.3 5.9 41 56-98 28-68 (251)
131 3cm0_A Adenylate kinase; ATP-b 96.4 0.002 6.9E-08 52.8 3.7 25 58-82 4-28 (186)
132 4a1f_A DNAB helicase, replicat 96.4 0.0056 1.9E-07 55.6 6.9 39 57-98 45-83 (338)
133 3umf_A Adenylate kinase; rossm 96.4 0.0021 7.2E-08 54.6 3.8 27 56-82 27-53 (217)
134 2qor_A Guanylate kinase; phosp 96.4 0.0013 4.6E-08 55.0 2.6 26 57-82 11-36 (204)
135 1ex7_A Guanylate kinase; subst 96.4 0.0014 4.9E-08 54.3 2.6 24 59-82 2-25 (186)
136 2ze6_A Isopentenyl transferase 96.4 0.0019 6.6E-08 56.2 3.6 24 59-82 2-25 (253)
137 1g5t_A COB(I)alamin adenosyltr 96.4 0.004 1.4E-07 51.8 5.3 26 58-83 28-53 (196)
138 1ukz_A Uridylate kinase; trans 96.4 0.0022 7.5E-08 53.5 3.8 26 57-82 14-39 (203)
139 3tr0_A Guanylate kinase, GMP k 96.4 0.0019 6.4E-08 53.9 3.3 25 58-82 7-31 (205)
140 2plr_A DTMP kinase, probable t 96.4 0.0022 7.6E-08 53.6 3.8 26 58-83 4-29 (213)
141 1y63_A LMAJ004144AAA protein; 96.3 0.0022 7.4E-08 52.8 3.4 25 57-81 9-33 (184)
142 1zuh_A Shikimate kinase; alpha 96.3 0.002 6.8E-08 52.0 3.1 26 57-82 6-31 (168)
143 2j41_A Guanylate kinase; GMP, 96.3 0.0021 7.2E-08 53.6 3.3 25 58-82 6-30 (207)
144 2bwj_A Adenylate kinase 5; pho 96.3 0.0022 7.6E-08 53.1 3.3 25 58-82 12-36 (199)
145 1sky_E F1-ATPase, F1-ATP synth 96.3 0.012 4.2E-07 55.5 8.7 25 58-82 151-175 (473)
146 1qf9_A UMP/CMP kinase, protein 96.3 0.0027 9.1E-08 52.2 3.8 25 58-82 6-30 (194)
147 2vli_A Antibiotic resistance p 96.3 0.0014 4.7E-08 53.6 2.0 25 58-82 5-29 (183)
148 1g41_A Heat shock protein HSLU 96.3 0.003 1E-07 59.5 4.4 48 36-83 15-75 (444)
149 2jaq_A Deoxyguanosine kinase; 96.3 0.0023 7.9E-08 53.1 3.3 23 60-82 2-24 (205)
150 1via_A Shikimate kinase; struc 96.3 0.0022 7.5E-08 52.2 3.1 24 59-82 5-28 (175)
151 2wsm_A Hydrogenase expression/ 96.3 0.0041 1.4E-07 52.4 4.9 40 42-82 15-54 (221)
152 3asz_A Uridine kinase; cytidin 96.3 0.0029 1E-07 53.1 3.9 26 57-82 5-30 (211)
153 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0055 1.9E-07 55.8 5.9 45 39-83 2-49 (359)
154 1nn5_A Similar to deoxythymidy 96.2 0.0027 9.3E-08 53.2 3.6 26 58-83 9-34 (215)
155 3l0o_A Transcription terminati 96.2 0.0078 2.7E-07 55.3 6.8 36 47-82 164-199 (427)
156 2pt7_A CAG-ALFA; ATPase, prote 96.2 0.0067 2.3E-07 54.9 6.4 68 59-130 172-253 (330)
157 2yvu_A Probable adenylyl-sulfa 96.2 0.0031 1.1E-07 51.8 3.9 27 57-83 12-38 (186)
158 2cdn_A Adenylate kinase; phosp 96.2 0.0026 8.9E-08 53.0 3.4 26 57-82 19-44 (201)
159 2b8t_A Thymidine kinase; deoxy 96.2 0.0075 2.6E-07 51.4 6.3 92 57-151 11-125 (223)
160 4gp7_A Metallophosphoesterase; 96.2 0.0021 7.1E-08 52.4 2.7 23 57-79 8-30 (171)
161 2iyv_A Shikimate kinase, SK; t 96.2 0.0018 6.1E-08 53.1 2.3 24 59-82 3-26 (184)
162 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0029 9.8E-08 55.3 3.7 26 57-82 3-28 (260)
163 2wwf_A Thymidilate kinase, put 96.2 0.0028 9.7E-08 53.0 3.5 27 57-83 9-35 (212)
164 1uf9_A TT1252 protein; P-loop, 96.2 0.0034 1.2E-07 52.1 3.9 25 57-81 7-31 (203)
165 2qt1_A Nicotinamide riboside k 96.2 0.0033 1.1E-07 52.7 3.8 26 57-82 20-45 (207)
166 2bdt_A BH3686; alpha-beta prot 96.2 0.0029 1E-07 52.1 3.4 23 59-81 3-25 (189)
167 1e6c_A Shikimate kinase; phosp 96.2 0.0021 7.2E-08 52.0 2.5 24 59-82 3-26 (173)
168 1zd8_A GTP:AMP phosphotransfer 96.2 0.0026 8.9E-08 54.2 3.2 25 58-82 7-31 (227)
169 1n0w_A DNA repair protein RAD5 96.2 0.013 4.3E-07 50.0 7.6 43 57-99 23-68 (243)
170 3a00_A Guanylate kinase, GMP k 96.2 0.002 6.9E-08 53.1 2.4 24 59-82 2-25 (186)
171 1zak_A Adenylate kinase; ATP:A 96.2 0.0026 8.7E-08 54.0 3.1 26 57-82 4-29 (222)
172 1aky_A Adenylate kinase; ATP:A 96.2 0.0029 9.8E-08 53.6 3.3 26 57-82 3-28 (220)
173 2bbw_A Adenylate kinase 4, AK4 96.1 0.0028 9.7E-08 54.7 3.3 26 57-82 26-51 (246)
174 3ney_A 55 kDa erythrocyte memb 96.1 0.0028 9.6E-08 53.0 3.1 26 57-82 18-43 (197)
175 1cke_A CK, MSSA, protein (cyti 96.1 0.0029 1E-07 53.6 3.3 24 59-82 6-29 (227)
176 3tqc_A Pantothenate kinase; bi 96.1 0.0056 1.9E-07 55.2 5.3 44 39-82 70-116 (321)
177 1vma_A Cell division protein F 96.1 0.014 4.9E-07 52.2 7.9 27 57-83 103-129 (306)
178 2pt5_A Shikimate kinase, SK; a 96.1 0.0033 1.1E-07 50.6 3.2 23 60-82 2-24 (168)
179 1lvg_A Guanylate kinase, GMP k 96.1 0.0023 7.9E-08 53.4 2.4 25 58-82 4-28 (198)
180 3fb4_A Adenylate kinase; psych 96.1 0.0033 1.1E-07 53.0 3.3 23 60-82 2-24 (216)
181 2ewv_A Twitching motility prot 96.1 0.004 1.4E-07 57.5 4.2 93 57-152 135-244 (372)
182 2pbr_A DTMP kinase, thymidylat 96.1 0.0033 1.1E-07 51.7 3.3 23 60-82 2-24 (195)
183 4a74_A DNA repair and recombin 96.1 0.0048 1.7E-07 52.2 4.4 26 57-82 24-49 (231)
184 2v54_A DTMP kinase, thymidylat 96.1 0.0034 1.2E-07 52.2 3.3 25 58-82 4-28 (204)
185 2z0h_A DTMP kinase, thymidylat 96.0 0.0035 1.2E-07 51.7 3.3 23 60-82 2-24 (197)
186 1ye8_A Protein THEP1, hypothet 96.0 0.0036 1.2E-07 51.4 3.3 23 60-82 2-24 (178)
187 4akg_A Glutathione S-transfera 96.0 0.018 6.2E-07 65.2 9.8 66 59-129 1268-1348(2695)
188 3zvl_A Bifunctional polynucleo 96.0 0.0067 2.3E-07 56.8 5.5 26 57-82 257-282 (416)
189 3fwy_A Light-independent proto 96.0 0.022 7.4E-07 51.2 8.6 39 57-98 47-85 (314)
190 3dl0_A Adenylate kinase; phosp 96.0 0.0036 1.2E-07 52.7 3.2 23 60-82 2-24 (216)
191 1htw_A HI0065; nucleotide-bind 96.0 0.0046 1.6E-07 49.8 3.6 26 57-82 32-57 (158)
192 2if2_A Dephospho-COA kinase; a 96.0 0.004 1.4E-07 51.9 3.3 23 59-82 2-24 (204)
193 1uj2_A Uridine-cytidine kinase 96.0 0.0045 1.5E-07 53.7 3.8 26 57-82 21-46 (252)
194 1m7g_A Adenylylsulfate kinase; 96.0 0.0049 1.7E-07 51.8 3.8 26 57-82 24-49 (211)
195 1znw_A Guanylate kinase, GMP k 95.9 0.0038 1.3E-07 52.4 3.1 26 57-82 19-44 (207)
196 2dr3_A UPF0273 protein PH0284; 95.9 0.0069 2.4E-07 51.8 4.8 39 57-98 22-60 (247)
197 2pez_A Bifunctional 3'-phospho 95.9 0.0052 1.8E-07 50.1 3.8 26 57-82 4-29 (179)
198 4e22_A Cytidylate kinase; P-lo 95.9 0.0044 1.5E-07 53.9 3.4 26 57-82 26-51 (252)
199 2jeo_A Uridine-cytidine kinase 95.9 0.0053 1.8E-07 53.0 3.9 26 57-82 24-49 (245)
200 1s96_A Guanylate kinase, GMP k 95.9 0.0041 1.4E-07 52.9 3.1 26 57-82 15-40 (219)
201 1jjv_A Dephospho-COA kinase; P 95.9 0.0046 1.6E-07 51.7 3.3 22 59-80 3-24 (206)
202 1z6g_A Guanylate kinase; struc 95.9 0.0035 1.2E-07 53.2 2.5 26 57-82 22-47 (218)
203 3kl4_A SRP54, signal recogniti 95.9 0.043 1.5E-06 51.4 10.1 27 57-83 96-122 (433)
204 2z43_A DNA repair and recombin 95.8 0.022 7.7E-07 51.3 7.9 52 56-107 105-159 (324)
205 2q6t_A DNAB replication FORK h 95.8 0.036 1.2E-06 52.2 9.6 41 56-98 198-238 (444)
206 1gtv_A TMK, thymidylate kinase 95.8 0.003 1E-07 53.0 1.9 23 60-82 2-24 (214)
207 3dm5_A SRP54, signal recogniti 95.8 0.047 1.6E-06 51.3 10.1 27 57-83 99-125 (443)
208 1u0j_A DNA replication protein 95.8 0.0094 3.2E-07 52.1 4.9 40 43-82 88-128 (267)
209 3aez_A Pantothenate kinase; tr 95.7 0.0059 2E-07 54.9 3.6 27 56-82 88-114 (312)
210 3bh0_A DNAB-like replicative h 95.7 0.036 1.2E-06 49.7 8.9 50 56-110 66-115 (315)
211 1e4v_A Adenylate kinase; trans 95.7 0.0061 2.1E-07 51.3 3.5 23 60-82 2-24 (214)
212 3be4_A Adenylate kinase; malar 95.7 0.0061 2.1E-07 51.5 3.5 25 58-82 5-29 (217)
213 1ak2_A Adenylate kinase isoenz 95.7 0.0061 2.1E-07 52.1 3.5 26 57-82 15-40 (233)
214 3tif_A Uncharacterized ABC tra 95.7 0.0083 2.9E-07 51.5 4.3 35 57-95 30-64 (235)
215 2ehv_A Hypothetical protein PH 95.7 0.0046 1.6E-07 53.1 2.7 24 57-80 29-52 (251)
216 2grj_A Dephospho-COA kinase; T 95.7 0.0061 2.1E-07 50.7 3.3 26 57-82 11-36 (192)
217 1xjc_A MOBB protein homolog; s 95.7 0.0061 2.1E-07 49.6 3.2 26 57-82 3-28 (169)
218 2xb4_A Adenylate kinase; ATP-b 95.7 0.0061 2.1E-07 51.8 3.3 23 60-82 2-24 (223)
219 1r6b_X CLPA protein; AAA+, N-t 95.7 0.013 4.3E-07 59.3 6.1 47 36-82 458-512 (758)
220 3f9v_A Minichromosome maintena 95.7 0.0037 1.3E-07 61.3 2.1 48 35-83 294-352 (595)
221 3a8t_A Adenylate isopentenyltr 95.6 0.007 2.4E-07 54.7 3.7 26 57-82 39-64 (339)
222 1vht_A Dephospho-COA kinase; s 95.6 0.0079 2.7E-07 50.7 3.7 23 58-80 4-26 (218)
223 3r20_A Cytidylate kinase; stru 95.6 0.0065 2.2E-07 52.1 3.2 25 58-82 9-33 (233)
224 1sq5_A Pantothenate kinase; P- 95.6 0.016 5.6E-07 51.8 6.0 26 57-82 79-104 (308)
225 2i1q_A DNA repair and recombin 95.6 0.042 1.5E-06 49.3 8.8 54 56-109 96-162 (322)
226 3cmu_A Protein RECA, recombina 95.6 0.023 7.8E-07 62.6 8.0 69 56-127 1425-1515(2050)
227 2f6r_A COA synthase, bifunctio 95.6 0.0077 2.6E-07 53.2 3.7 23 57-79 74-96 (281)
228 3exa_A TRNA delta(2)-isopenten 95.6 0.008 2.7E-07 53.8 3.7 25 58-82 3-27 (322)
229 3lnc_A Guanylate kinase, GMP k 95.6 0.0045 1.5E-07 52.8 2.0 26 57-82 26-52 (231)
230 2ck3_D ATP synthase subunit be 95.6 0.04 1.4E-06 52.0 8.6 50 47-98 142-191 (482)
231 3ake_A Cytidylate kinase; CMP 95.6 0.0074 2.5E-07 50.2 3.3 23 60-82 4-26 (208)
232 3upu_A ATP-dependent DNA helic 95.5 0.016 5.4E-07 55.0 6.0 42 40-83 29-70 (459)
233 2xxa_A Signal recognition part 95.5 0.067 2.3E-06 50.2 10.2 41 43-83 77-125 (433)
234 3crm_A TRNA delta(2)-isopenten 95.5 0.0079 2.7E-07 54.1 3.4 25 58-82 5-29 (323)
235 1b0u_A Histidine permease; ABC 95.5 0.011 3.9E-07 51.6 4.3 35 57-95 31-65 (262)
236 3nwj_A ATSK2; P loop, shikimat 95.5 0.0082 2.8E-07 52.1 3.4 25 58-82 48-72 (250)
237 2pcj_A ABC transporter, lipopr 95.5 0.01 3.5E-07 50.6 3.9 35 57-95 29-63 (224)
238 3b85_A Phosphate starvation-in 95.4 0.0094 3.2E-07 50.2 3.6 37 38-81 9-45 (208)
239 3d3q_A TRNA delta(2)-isopenten 95.4 0.0087 3E-07 54.3 3.5 24 59-82 8-31 (340)
240 2onk_A Molybdate/tungstate ABC 95.4 0.012 4.1E-07 50.7 4.3 26 56-82 23-48 (240)
241 2ffh_A Protein (FFH); SRP54, s 95.4 0.043 1.5E-06 51.4 8.3 27 57-83 97-123 (425)
242 2r6a_A DNAB helicase, replicat 95.4 0.033 1.1E-06 52.7 7.7 40 57-98 202-241 (454)
243 3foz_A TRNA delta(2)-isopenten 95.4 0.0099 3.4E-07 53.1 3.8 26 57-82 9-34 (316)
244 2qmh_A HPR kinase/phosphorylas 95.4 0.0086 3E-07 49.9 3.1 25 58-82 34-58 (205)
245 2f1r_A Molybdopterin-guanine d 95.4 0.0068 2.3E-07 49.4 2.5 24 59-82 3-26 (171)
246 1ypw_A Transitional endoplasmi 95.4 0.0013 4.6E-08 66.9 -2.3 86 37-128 478-581 (806)
247 4eaq_A DTMP kinase, thymidylat 95.4 0.011 3.9E-07 50.5 3.9 27 57-83 25-51 (229)
248 1ltq_A Polynucleotide kinase; 95.4 0.0093 3.2E-07 52.9 3.5 24 59-82 3-26 (301)
249 1rj9_A FTSY, signal recognitio 95.4 0.0089 3E-07 53.5 3.3 26 57-82 101-126 (304)
250 3gfo_A Cobalt import ATP-bindi 95.3 0.013 4.3E-07 51.7 4.2 35 57-95 33-67 (275)
251 1g8f_A Sulfate adenylyltransfe 95.3 0.017 5.7E-07 55.4 5.3 48 36-83 372-420 (511)
252 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.0095 3.2E-07 50.3 3.3 26 57-82 22-47 (235)
253 2olj_A Amino acid ABC transpor 95.3 0.014 4.7E-07 51.1 4.3 36 56-95 48-83 (263)
254 2ixe_A Antigen peptide transpo 95.3 0.014 4.9E-07 51.2 4.3 35 57-95 44-78 (271)
255 1np6_A Molybdopterin-guanine d 95.3 0.01 3.5E-07 48.5 3.1 25 58-82 6-30 (174)
256 3b9q_A Chloroplast SRP recepto 95.3 0.012 4E-07 52.7 3.8 26 57-82 99-124 (302)
257 2yhs_A FTSY, cell division pro 95.3 0.023 7.9E-07 54.1 5.9 27 56-82 291-317 (503)
258 2cbz_A Multidrug resistance-as 95.2 0.0094 3.2E-07 51.3 3.0 26 57-82 30-55 (237)
259 1j8m_F SRP54, signal recogniti 95.2 0.081 2.8E-06 47.0 9.2 26 58-83 98-123 (297)
260 3thx_A DNA mismatch repair pro 95.2 0.035 1.2E-06 57.1 7.6 152 57-209 661-849 (934)
261 2ff7_A Alpha-hemolysin translo 95.2 0.013 4.4E-07 50.8 3.8 35 57-95 34-68 (247)
262 3cr8_A Sulfate adenylyltranfer 95.2 0.023 7.8E-07 55.1 5.9 45 38-82 348-393 (552)
263 1a7j_A Phosphoribulokinase; tr 95.2 0.0051 1.7E-07 54.7 1.2 26 57-82 4-29 (290)
264 2eyu_A Twitching motility prot 95.2 0.013 4.3E-07 51.2 3.7 93 57-152 24-133 (261)
265 1vpl_A ABC transporter, ATP-bi 95.2 0.016 5.4E-07 50.5 4.3 35 57-95 40-74 (256)
266 1mv5_A LMRA, multidrug resista 95.2 0.012 4E-07 50.9 3.4 26 57-82 27-52 (243)
267 1ji0_A ABC transporter; ATP bi 95.2 0.014 4.7E-07 50.3 3.8 35 57-95 31-65 (240)
268 2px0_A Flagellar biosynthesis 95.2 0.012 4.1E-07 52.4 3.5 26 57-82 104-129 (296)
269 2ocp_A DGK, deoxyguanosine kin 95.2 0.013 4.6E-07 50.2 3.7 25 58-82 2-26 (241)
270 2i3b_A HCR-ntpase, human cance 95.1 0.0096 3.3E-07 49.4 2.7 24 59-82 2-25 (189)
271 2pze_A Cystic fibrosis transme 95.1 0.014 4.8E-07 49.9 3.8 26 57-82 33-58 (229)
272 1ls1_A Signal recognition part 95.1 0.053 1.8E-06 48.2 7.7 27 57-83 97-123 (295)
273 4b3f_X DNA-binding protein smu 95.1 0.02 6.9E-07 56.7 5.4 62 43-111 193-254 (646)
274 4g1u_C Hemin import ATP-bindin 95.1 0.015 5.1E-07 51.0 4.0 35 57-95 36-70 (266)
275 1g6h_A High-affinity branched- 95.1 0.017 5.7E-07 50.4 4.2 35 57-95 32-66 (257)
276 1sgw_A Putative ABC transporte 95.1 0.012 4.1E-07 49.8 3.2 35 57-95 34-68 (214)
277 3nh6_A ATP-binding cassette SU 95.1 0.016 5.4E-07 51.9 4.1 36 56-95 78-113 (306)
278 2yz2_A Putative ABC transporte 95.1 0.018 6E-07 50.5 4.3 35 57-95 32-66 (266)
279 1fx0_B ATP synthase beta chain 95.1 0.048 1.7E-06 51.7 7.6 49 48-98 155-203 (498)
280 3e70_C DPA, signal recognition 95.1 0.014 4.9E-07 52.7 3.9 26 57-82 128-153 (328)
281 1pzn_A RAD51, DNA repair and r 95.1 0.018 6.3E-07 52.5 4.6 27 56-82 129-155 (349)
282 3p32_A Probable GTPase RV1496/ 95.0 0.031 1.1E-06 51.1 6.0 27 56-82 77-103 (355)
283 4edh_A DTMP kinase, thymidylat 95.0 0.027 9.1E-07 47.6 5.2 32 58-91 6-37 (213)
284 2ged_A SR-beta, signal recogni 95.0 0.032 1.1E-06 45.5 5.6 26 57-82 47-72 (193)
285 1cr0_A DNA primase/helicase; R 95.0 0.013 4.4E-07 52.0 3.4 26 57-82 34-59 (296)
286 2r8r_A Sensor protein; KDPD, P 95.0 0.021 7.1E-07 48.6 4.4 32 58-91 6-37 (228)
287 2zu0_C Probable ATP-dependent 95.0 0.013 4.3E-07 51.4 3.2 25 57-81 45-69 (267)
288 1svm_A Large T antigen; AAA+ f 95.0 0.024 8.2E-07 52.2 5.2 27 56-82 167-193 (377)
289 1nlf_A Regulatory protein REPA 95.0 0.012 4.2E-07 51.6 3.1 26 57-82 29-54 (279)
290 3cmu_A Protein RECA, recombina 94.9 0.048 1.6E-06 60.1 8.0 70 56-128 381-472 (2050)
291 2ghi_A Transport protein; mult 94.9 0.013 4.4E-07 51.2 3.0 34 57-95 45-78 (260)
292 1oix_A RAS-related protein RAB 94.9 0.015 5.2E-07 47.8 3.3 25 58-82 29-53 (191)
293 2d2e_A SUFC protein; ABC-ATPas 94.9 0.014 4.6E-07 50.7 3.1 25 57-81 28-52 (250)
294 3cmw_A Protein RECA, recombina 94.9 0.047 1.6E-06 59.4 7.7 71 56-129 381-473 (1706)
295 2og2_A Putative signal recogni 94.9 0.017 5.7E-07 52.9 3.8 26 57-82 156-181 (359)
296 3eph_A TRNA isopentenyltransfe 94.9 0.017 5.9E-07 53.5 3.8 25 58-82 2-26 (409)
297 2v9p_A Replication protein E1; 94.9 0.013 4.5E-07 52.3 3.0 26 57-82 125-150 (305)
298 2ihy_A ABC transporter, ATP-bi 94.9 0.02 6.9E-07 50.5 4.2 35 57-95 46-80 (279)
299 4f4c_A Multidrug resistance pr 94.9 0.048 1.6E-06 58.5 7.8 27 56-82 442-468 (1321)
300 1q3t_A Cytidylate kinase; nucl 94.9 0.016 5.6E-07 49.5 3.5 26 57-82 15-40 (236)
301 3tqf_A HPR(Ser) kinase; transf 94.9 0.019 6.5E-07 46.7 3.6 25 58-82 16-40 (181)
302 2dyk_A GTP-binding protein; GT 94.8 0.018 6.2E-07 45.3 3.4 24 59-82 2-25 (161)
303 2orw_A Thymidine kinase; TMTK, 94.8 0.018 6.3E-07 47.3 3.5 24 59-82 4-27 (184)
304 1yrb_A ATP(GTP)binding protein 94.8 0.021 7.1E-07 49.4 3.9 26 57-82 13-38 (262)
305 1p5z_B DCK, deoxycytidine kina 94.8 0.011 3.7E-07 51.5 2.1 26 57-82 23-48 (263)
306 2zej_A Dardarin, leucine-rich 94.7 0.014 4.7E-07 47.6 2.6 22 60-81 4-25 (184)
307 2vp4_A Deoxynucleoside kinase; 94.7 0.015 5E-07 49.7 2.8 25 57-81 19-43 (230)
308 1zu4_A FTSY; GTPase, signal re 94.7 0.027 9.4E-07 50.7 4.7 27 57-83 104-130 (320)
309 2wji_A Ferrous iron transport 94.7 0.02 7E-07 45.7 3.5 24 58-81 3-26 (165)
310 3fvq_A Fe(3+) IONS import ATP- 94.7 0.028 9.5E-07 51.4 4.7 26 57-82 29-54 (359)
311 2qi9_C Vitamin B12 import ATP- 94.7 0.015 5.2E-07 50.3 2.9 26 57-82 25-50 (249)
312 2f9l_A RAB11B, member RAS onco 94.7 0.016 5.6E-07 47.8 2.9 25 58-82 5-29 (199)
313 3lda_A DNA repair protein RAD5 94.7 0.021 7.2E-07 53.1 3.9 44 56-99 176-222 (400)
314 3lv8_A DTMP kinase, thymidylat 94.7 0.051 1.8E-06 46.6 6.0 53 57-114 26-78 (236)
315 2nq2_C Hypothetical ABC transp 94.6 0.014 4.7E-07 50.8 2.4 26 57-82 30-55 (253)
316 3oaa_A ATP synthase subunit al 94.6 0.049 1.7E-06 51.6 6.2 33 49-81 153-186 (513)
317 4tmk_A Protein (thymidylate ki 94.6 0.06 2.1E-06 45.4 6.2 26 58-83 3-28 (213)
318 1p9r_A General secretion pathw 94.6 0.051 1.7E-06 50.8 6.2 26 57-82 166-191 (418)
319 2r9v_A ATP synthase subunit al 94.6 0.037 1.3E-06 52.6 5.2 35 48-82 165-200 (515)
320 3end_A Light-independent proto 94.5 0.036 1.2E-06 49.3 5.0 40 57-99 40-79 (307)
321 2ce2_X GTPase HRAS; signaling 94.5 0.02 7E-07 45.0 3.0 24 59-82 4-27 (166)
322 3vr4_D V-type sodium ATPase su 94.5 0.037 1.3E-06 52.0 5.1 26 57-82 150-175 (465)
323 1nij_A Hypothetical protein YJ 94.5 0.018 6.2E-07 51.8 2.9 26 57-82 3-28 (318)
324 3ld9_A DTMP kinase, thymidylat 94.5 0.028 9.5E-07 47.8 3.9 27 57-83 20-46 (223)
325 2gza_A Type IV secretion syste 94.5 0.034 1.2E-06 50.9 4.8 25 58-82 175-199 (361)
326 3sop_A Neuronal-specific septi 94.5 0.021 7E-07 50.2 3.2 23 60-82 4-26 (270)
327 2wjg_A FEOB, ferrous iron tran 94.5 0.025 8.5E-07 45.9 3.5 24 58-81 7-30 (188)
328 2qe7_A ATP synthase subunit al 94.4 0.04 1.4E-06 52.3 5.2 35 48-82 152-187 (502)
329 3d31_A Sulfate/molybdate ABC t 94.4 0.031 1.1E-06 50.9 4.4 26 57-82 25-50 (348)
330 4gzl_A RAS-related C3 botulinu 94.4 0.025 8.7E-07 46.9 3.6 42 40-82 13-54 (204)
331 4hlc_A DTMP kinase, thymidylat 94.4 0.042 1.4E-06 46.0 4.9 31 59-92 3-33 (205)
332 2bbs_A Cystic fibrosis transme 94.4 0.021 7.2E-07 50.7 3.1 27 56-82 62-88 (290)
333 3kta_A Chromosome segregation 94.4 0.024 8.1E-07 46.1 3.2 24 59-82 27-50 (182)
334 1z2a_A RAS-related protein RAB 94.4 0.022 7.4E-07 45.1 2.9 25 58-82 5-29 (168)
335 2it1_A 362AA long hypothetical 94.3 0.036 1.2E-06 50.8 4.5 26 57-82 28-53 (362)
336 2yyz_A Sugar ABC transporter, 94.3 0.036 1.2E-06 50.6 4.6 26 57-82 28-53 (359)
337 2pjz_A Hypothetical protein ST 94.3 0.021 7.2E-07 49.9 2.9 24 58-81 30-53 (263)
338 2lkc_A Translation initiation 94.3 0.027 9.2E-07 45.2 3.3 26 57-82 7-32 (178)
339 1tq4_A IIGP1, interferon-induc 94.3 0.032 1.1E-06 52.0 4.2 26 57-82 68-93 (413)
340 4f4c_A Multidrug resistance pr 94.3 0.069 2.4E-06 57.2 7.3 27 56-82 1103-1129(1321)
341 3vkg_A Dynein heavy chain, cyt 94.3 0.066 2.3E-06 61.5 7.3 75 48-130 1297-1387(3245)
342 2axn_A 6-phosphofructo-2-kinas 94.2 0.029 9.8E-07 54.1 3.9 26 57-82 34-59 (520)
343 1v43_A Sugar-binding transport 94.2 0.038 1.3E-06 50.8 4.5 26 57-82 36-61 (372)
344 3tui_C Methionine import ATP-b 94.2 0.039 1.3E-06 50.5 4.5 26 57-82 53-78 (366)
345 1nrj_B SR-beta, signal recogni 94.2 0.028 9.4E-07 47.0 3.3 26 57-82 11-36 (218)
346 3rlf_A Maltose/maltodextrin im 94.2 0.025 8.6E-07 52.1 3.2 26 57-82 28-53 (381)
347 1f6b_A SAR1; gtpases, N-termin 94.2 0.039 1.3E-06 45.6 4.1 25 57-81 24-48 (198)
348 1zj6_A ADP-ribosylation factor 94.2 0.064 2.2E-06 43.5 5.4 34 46-81 6-39 (187)
349 1u8z_A RAS-related protein RAL 94.2 0.026 8.9E-07 44.5 2.9 25 58-82 4-28 (168)
350 2h92_A Cytidylate kinase; ross 94.1 0.022 7.5E-07 47.9 2.6 24 59-82 4-27 (219)
351 1m8p_A Sulfate adenylyltransfe 94.1 0.046 1.6E-06 53.3 5.1 26 57-82 395-420 (573)
352 2gks_A Bifunctional SAT/APS ki 94.1 0.06 2E-06 52.1 5.9 46 37-82 350-396 (546)
353 1kao_A RAP2A; GTP-binding prot 94.1 0.026 9E-07 44.4 2.9 24 59-82 4-27 (167)
354 1oxx_K GLCV, glucose, ABC tran 94.1 0.032 1.1E-06 50.9 3.7 26 57-82 30-55 (353)
355 1ek0_A Protein (GTP-binding pr 94.1 0.027 9.3E-07 44.6 2.9 24 59-82 4-27 (170)
356 1m7b_A RND3/RHOE small GTP-bin 94.1 0.028 9.6E-07 45.6 3.0 26 57-82 6-31 (184)
357 1z47_A CYSA, putative ABC-tran 94.1 0.026 9E-07 51.5 3.1 26 57-82 40-65 (355)
358 3con_A GTPase NRAS; structural 94.1 0.027 9.1E-07 45.9 2.9 24 59-82 22-45 (190)
359 1z08_A RAS-related protein RAB 94.1 0.027 9.1E-07 44.8 2.8 25 58-82 6-30 (170)
360 1lw7_A Transcriptional regulat 94.0 0.03 1E-06 51.2 3.5 25 58-82 170-194 (365)
361 1svi_A GTP-binding protein YSX 94.0 0.03 1E-06 45.7 3.2 25 57-81 22-46 (195)
362 1z0j_A RAB-22, RAS-related pro 94.0 0.028 9.7E-07 44.5 2.9 24 59-82 7-30 (170)
363 1r8s_A ADP-ribosylation factor 94.0 0.03 1E-06 44.2 3.0 23 60-82 2-24 (164)
364 1g29_1 MALK, maltose transport 94.0 0.044 1.5E-06 50.4 4.4 26 57-82 28-53 (372)
365 3vr4_A V-type sodium ATPase ca 94.0 0.24 8.3E-06 47.7 9.6 35 48-82 222-256 (600)
366 1g16_A RAS-related protein SEC 94.0 0.03 1E-06 44.3 3.0 25 58-82 3-27 (170)
367 2erx_A GTP-binding protein DI- 94.0 0.029 9.8E-07 44.5 2.8 23 59-81 4-26 (172)
368 2gj8_A MNME, tRNA modification 94.0 0.036 1.2E-06 44.6 3.5 24 58-81 4-27 (172)
369 1c1y_A RAS-related protein RAP 94.0 0.031 1.1E-06 44.2 3.0 24 59-82 4-27 (167)
370 2nzj_A GTP-binding protein REM 93.9 0.039 1.3E-06 44.0 3.6 25 58-82 4-28 (175)
371 2fn4_A P23, RAS-related protei 93.9 0.041 1.4E-06 44.1 3.7 26 57-82 8-33 (181)
372 3q85_A GTP-binding protein REM 93.9 0.03 1E-06 44.5 2.9 23 59-81 3-25 (169)
373 3gmt_A Adenylate kinase; ssgci 93.9 0.031 1.1E-06 47.7 3.1 25 58-82 8-32 (230)
374 3q72_A GTP-binding protein RAD 93.9 0.03 1E-06 44.3 2.9 23 60-82 4-26 (166)
375 3ihw_A Centg3; RAS, centaurin, 93.9 0.029 1E-06 45.7 2.9 26 57-82 19-44 (184)
376 2hxs_A RAB-26, RAS-related pro 93.9 0.032 1.1E-06 44.7 3.1 26 57-82 5-30 (178)
377 1fx0_A ATP synthase alpha chai 93.9 0.051 1.8E-06 51.6 4.8 26 57-82 162-188 (507)
378 1wms_A RAB-9, RAB9, RAS-relate 93.9 0.03 1E-06 44.8 2.9 25 58-82 7-31 (177)
379 1ko7_A HPR kinase/phosphatase; 93.9 0.068 2.3E-06 47.8 5.3 25 58-82 144-168 (314)
380 1ky3_A GTP-binding protein YPT 93.9 0.039 1.3E-06 44.3 3.5 26 57-82 7-32 (182)
381 3v9p_A DTMP kinase, thymidylat 93.9 0.027 9.2E-07 48.1 2.6 27 57-83 24-50 (227)
382 3pqc_A Probable GTP-binding pr 93.9 0.035 1.2E-06 45.2 3.2 26 57-82 22-47 (195)
383 1m2o_B GTP-binding protein SAR 93.9 0.034 1.2E-06 45.5 3.1 24 58-81 23-46 (190)
384 2v3c_C SRP54, signal recogniti 93.9 0.035 1.2E-06 52.2 3.5 26 58-83 99-124 (432)
385 1cp2_A CP2, nitrogenase iron p 93.8 0.077 2.6E-06 46.0 5.6 37 59-98 2-38 (269)
386 3gd7_A Fusion complex of cysti 93.8 0.034 1.2E-06 51.4 3.4 26 57-82 46-71 (390)
387 3cmw_A Protein RECA, recombina 93.8 0.073 2.5E-06 57.9 6.3 70 56-128 1429-1520(1706)
388 3fdi_A Uncharacterized protein 93.8 0.039 1.3E-06 46.0 3.4 25 58-82 6-30 (201)
389 2cxx_A Probable GTP-binding pr 93.8 0.03 1E-06 45.4 2.7 23 60-82 3-25 (190)
390 1moz_A ARL1, ADP-ribosylation 93.8 0.035 1.2E-06 44.8 3.0 25 57-81 17-41 (183)
391 2qm8_A GTPase/ATPase; G protei 93.8 0.039 1.3E-06 50.0 3.6 27 56-82 53-79 (337)
392 3bgw_A DNAB-like replicative h 93.8 0.036 1.2E-06 52.3 3.5 40 56-98 195-234 (444)
393 3c5c_A RAS-like protein 12; GD 93.8 0.033 1.1E-06 45.5 2.9 26 57-82 20-45 (187)
394 1r2q_A RAS-related protein RAB 93.8 0.034 1.2E-06 44.0 2.9 23 59-81 7-29 (170)
395 1upt_A ARL1, ADP-ribosylation 93.8 0.045 1.5E-06 43.4 3.6 25 58-82 7-31 (171)
396 1pui_A ENGB, probable GTP-bind 93.8 0.022 7.5E-07 47.3 1.8 25 57-81 25-49 (210)
397 3mfy_A V-type ATP synthase alp 93.8 0.22 7.4E-06 47.9 8.7 35 48-82 217-251 (588)
398 2bme_A RAB4A, RAS-related prot 93.8 0.036 1.2E-06 44.8 3.0 25 58-82 10-34 (186)
399 1bif_A 6-phosphofructo-2-kinas 93.7 0.04 1.4E-06 52.3 3.8 27 57-83 38-64 (469)
400 2y8e_A RAB-protein 6, GH09086P 93.7 0.036 1.2E-06 44.3 3.0 24 59-82 15-38 (179)
401 3tmk_A Thymidylate kinase; pho 93.7 0.043 1.5E-06 46.4 3.6 26 58-83 5-30 (216)
402 1z0f_A RAB14, member RAS oncog 93.7 0.035 1.2E-06 44.4 2.9 26 57-82 14-39 (179)
403 2www_A Methylmalonic aciduria 93.7 0.04 1.4E-06 50.2 3.6 26 57-82 73-98 (349)
404 1fzq_A ADP-ribosylation factor 93.7 0.038 1.3E-06 44.8 3.1 25 57-81 15-39 (181)
405 4dsu_A GTPase KRAS, isoform 2B 93.6 0.036 1.2E-06 44.8 2.9 24 59-82 5-28 (189)
406 3kkq_A RAS-related protein M-R 93.6 0.036 1.2E-06 44.7 2.9 26 57-82 17-42 (183)
407 2iwr_A Centaurin gamma 1; ANK 93.6 0.028 9.5E-07 45.2 2.2 25 58-82 7-31 (178)
408 3bc1_A RAS-related protein RAB 93.6 0.036 1.2E-06 44.9 2.9 25 58-82 11-35 (195)
409 1x6v_B Bifunctional 3'-phospho 93.6 0.044 1.5E-06 53.8 3.8 26 57-82 51-76 (630)
410 2oap_1 GSPE-2, type II secreti 93.6 0.1 3.4E-06 50.1 6.2 24 59-82 261-284 (511)
411 3t5g_A GTP-binding protein RHE 93.6 0.041 1.4E-06 44.3 3.0 25 58-82 6-30 (181)
412 2cjw_A GTP-binding protein GEM 93.5 0.038 1.3E-06 45.4 2.9 24 58-81 6-29 (192)
413 1mh1_A RAC1; GTP-binding, GTPa 93.5 0.039 1.3E-06 44.5 2.9 24 59-82 6-29 (186)
414 2a9k_A RAS-related protein RAL 93.5 0.039 1.3E-06 44.5 2.9 26 57-82 17-42 (187)
415 3t1o_A Gliding protein MGLA; G 93.5 0.04 1.4E-06 44.9 2.9 25 58-82 14-38 (198)
416 3dz8_A RAS-related protein RAB 93.5 0.044 1.5E-06 44.7 3.2 25 58-82 23-47 (191)
417 3tw8_B RAS-related protein RAB 93.5 0.031 1.1E-06 44.8 2.2 26 57-82 8-33 (181)
418 3bwd_D RAC-like GTP-binding pr 93.5 0.04 1.4E-06 44.3 2.9 25 58-82 8-32 (182)
419 2afh_E Nitrogenase iron protei 93.5 0.08 2.8E-06 46.5 5.1 38 58-98 2-39 (289)
420 2efe_B Small GTP-binding prote 93.5 0.039 1.3E-06 44.3 2.8 25 58-82 12-36 (181)
421 3hjn_A DTMP kinase, thymidylat 93.5 0.071 2.4E-06 44.3 4.5 24 60-83 2-25 (197)
422 2oil_A CATX-8, RAS-related pro 93.5 0.04 1.4E-06 45.0 2.9 26 57-82 24-49 (193)
423 2c61_A A-type ATP synthase non 93.4 0.07 2.4E-06 50.3 4.8 34 49-82 143-176 (469)
424 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.055 1.9E-06 42.8 3.5 25 58-82 23-47 (149)
425 1c9k_A COBU, adenosylcobinamid 93.4 0.036 1.2E-06 45.4 2.4 21 61-81 2-22 (180)
426 1gwn_A RHO-related GTP-binding 93.4 0.044 1.5E-06 45.6 3.0 26 57-82 27-52 (205)
427 3gqb_B V-type ATP synthase bet 93.4 0.066 2.2E-06 50.3 4.5 26 57-82 146-171 (464)
428 2g6b_A RAS-related protein RAB 93.4 0.043 1.5E-06 44.0 2.9 25 58-82 10-34 (180)
429 3clv_A RAB5 protein, putative; 93.4 0.042 1.4E-06 44.9 2.9 25 58-82 7-31 (208)
430 2atv_A RERG, RAS-like estrogen 93.4 0.042 1.4E-06 45.1 2.9 26 57-82 27-52 (196)
431 2ew1_A RAS-related protein RAB 93.3 0.045 1.6E-06 45.4 3.0 26 57-82 25-50 (201)
432 2fg5_A RAB-22B, RAS-related pr 93.3 0.045 1.5E-06 44.7 3.0 25 58-82 23-47 (192)
433 1vg8_A RAS-related protein RAB 93.3 0.044 1.5E-06 45.2 2.9 26 57-82 7-32 (207)
434 3oes_A GTPase rhebl1; small GT 93.2 0.048 1.6E-06 45.0 3.0 26 57-82 23-48 (201)
435 2gf9_A RAS-related protein RAB 93.2 0.046 1.6E-06 44.5 2.9 25 58-82 22-46 (189)
436 3cbq_A GTP-binding protein REM 93.2 0.035 1.2E-06 45.7 2.2 24 57-80 22-45 (195)
437 2qu8_A Putative nucleolar GTP- 93.2 0.055 1.9E-06 45.7 3.5 26 57-82 28-53 (228)
438 3llu_A RAS-related GTP-binding 93.2 0.043 1.5E-06 45.1 2.7 26 57-82 19-44 (196)
439 2p67_A LAO/AO transport system 93.2 0.13 4.4E-06 46.6 6.1 27 56-82 54-80 (341)
440 2dpy_A FLII, flagellum-specifi 93.2 0.083 2.8E-06 49.7 4.9 26 57-82 156-181 (438)
441 1q57_A DNA primase/helicase; d 93.2 0.21 7.3E-06 47.7 7.9 40 57-98 241-280 (503)
442 2yv5_A YJEQ protein; hydrolase 93.2 0.064 2.2E-06 47.8 4.0 23 59-82 166-188 (302)
443 4dkx_A RAS-related protein RAB 93.2 0.047 1.6E-06 46.1 2.9 22 60-81 15-36 (216)
444 3reg_A RHO-like small GTPase; 93.2 0.048 1.6E-06 44.6 2.9 26 57-82 22-47 (194)
445 2fh5_B SR-beta, signal recogni 93.2 0.047 1.6E-06 45.4 2.9 26 57-82 6-31 (214)
446 1zd9_A ADP-ribosylation factor 93.2 0.048 1.6E-06 44.4 2.9 25 58-82 22-46 (188)
447 3tkl_A RAS-related protein RAB 93.2 0.048 1.6E-06 44.5 2.9 25 58-82 16-40 (196)
448 1zbd_A Rabphilin-3A; G protein 93.1 0.046 1.6E-06 45.0 2.8 25 58-82 8-32 (203)
449 3hdt_A Putative kinase; struct 93.1 0.072 2.4E-06 45.3 4.0 25 58-82 14-38 (223)
450 2bov_A RAla, RAS-related prote 93.1 0.064 2.2E-06 44.1 3.7 26 57-82 13-38 (206)
451 2a5j_A RAS-related protein RAB 93.1 0.048 1.6E-06 44.5 2.9 25 58-82 21-45 (191)
452 2qnr_A Septin-2, protein NEDD5 93.1 0.043 1.5E-06 48.9 2.7 22 59-80 19-40 (301)
453 4bas_A ADP-ribosylation factor 93.1 0.047 1.6E-06 44.6 2.8 26 57-82 16-41 (199)
454 2gf0_A GTP-binding protein DI- 93.1 0.053 1.8E-06 44.3 3.1 25 57-81 7-31 (199)
455 4akg_A Glutathione S-transfera 93.1 0.27 9.3E-06 56.0 9.5 65 57-127 1608-1677(2695)
456 1x3s_A RAS-related protein RAB 93.1 0.051 1.7E-06 44.2 2.9 25 58-82 15-39 (195)
457 1ksh_A ARF-like protein 2; sma 93.0 0.058 2E-06 43.6 3.2 26 57-82 17-42 (186)
458 2obl_A ESCN; ATPase, hydrolase 93.0 0.054 1.9E-06 49.3 3.3 26 57-82 70-95 (347)
459 2j37_W Signal recognition part 93.0 0.059 2E-06 51.6 3.7 27 57-83 100-126 (504)
460 2h17_A ADP-ribosylation factor 93.0 0.049 1.7E-06 44.0 2.7 26 57-82 20-45 (181)
461 2o52_A RAS-related protein RAB 93.0 0.05 1.7E-06 44.9 2.8 26 57-82 24-49 (200)
462 2g3y_A GTP-binding protein GEM 93.0 0.05 1.7E-06 45.7 2.8 24 57-80 36-59 (211)
463 2bcg_Y Protein YP2, GTP-bindin 93.0 0.054 1.8E-06 44.8 3.0 25 58-82 8-32 (206)
464 3iqw_A Tail-anchored protein t 93.0 0.12 3.9E-06 46.8 5.4 39 57-98 15-53 (334)
465 2gk6_A Regulator of nonsense t 93.0 0.15 5.2E-06 50.1 6.7 49 59-110 196-244 (624)
466 4dzz_A Plasmid partitioning pr 93.0 0.2 7E-06 41.1 6.6 37 59-98 2-39 (206)
467 2q3h_A RAS homolog gene family 92.9 0.049 1.7E-06 44.7 2.7 26 57-82 19-44 (201)
468 2p5s_A RAS and EF-hand domain 92.9 0.052 1.8E-06 44.7 2.8 26 57-82 27-52 (199)
469 3b60_A Lipid A export ATP-bind 92.9 0.082 2.8E-06 51.6 4.7 36 56-95 367-402 (582)
470 3e1s_A Exodeoxyribonuclease V, 92.9 0.09 3.1E-06 51.2 4.8 37 44-83 193-229 (574)
471 2atx_A Small GTP binding prote 92.9 0.059 2E-06 44.0 3.0 25 58-82 18-42 (194)
472 1h65_A Chloroplast outer envel 92.8 0.15 5E-06 44.4 5.8 39 44-82 24-63 (270)
473 3lxx_A GTPase IMAP family memb 92.8 0.066 2.2E-06 45.6 3.4 26 57-82 28-53 (239)
474 2rcn_A Probable GTPase ENGC; Y 92.8 0.057 2E-06 49.3 3.1 24 59-82 216-239 (358)
475 2j1l_A RHO-related GTP-binding 92.8 0.056 1.9E-06 45.2 2.8 25 57-81 33-57 (214)
476 1z06_A RAS-related protein RAB 92.8 0.074 2.5E-06 43.2 3.5 26 57-82 19-44 (189)
477 2fv8_A H6, RHO-related GTP-bin 92.7 0.061 2.1E-06 44.6 3.0 25 58-82 25-49 (207)
478 1ega_A Protein (GTP-binding pr 92.7 0.056 1.9E-06 48.1 2.9 26 57-82 7-32 (301)
479 2hup_A RAS-related protein RAB 92.7 0.062 2.1E-06 44.4 3.0 26 57-82 28-53 (201)
480 2j0v_A RAC-like GTP-binding pr 92.7 0.062 2.1E-06 44.6 3.0 26 57-82 8-33 (212)
481 3iev_A GTP-binding protein ERA 92.7 0.059 2E-06 48.1 3.1 27 56-82 8-34 (308)
482 3k53_A Ferrous iron transport 92.7 0.075 2.5E-06 46.4 3.6 25 58-82 3-27 (271)
483 2ck3_A ATP synthase subunit al 92.7 0.12 4.2E-06 49.1 5.3 35 48-82 152-187 (510)
484 3ch4_B Pmkase, phosphomevalona 92.7 0.095 3.3E-06 43.7 4.0 26 57-82 10-35 (202)
485 2b6h_A ADP-ribosylation factor 92.7 0.068 2.3E-06 43.8 3.2 25 57-81 28-52 (192)
486 3kjh_A CO dehydrogenase/acetyl 92.7 0.13 4.4E-06 43.7 5.1 36 61-99 3-38 (254)
487 2il1_A RAB12; G-protein, GDP, 92.7 0.049 1.7E-06 44.6 2.3 25 58-82 26-50 (192)
488 2npi_A Protein CLP1; CLP1-PCF1 92.7 0.054 1.8E-06 51.3 2.8 26 57-82 137-162 (460)
489 3cph_A RAS-related protein SEC 92.6 0.062 2.1E-06 44.5 2.9 26 57-82 19-44 (213)
490 3b5x_A Lipid A export ATP-bind 92.6 0.076 2.6E-06 51.8 3.9 27 56-82 367-393 (582)
491 2fu5_C RAS-related protein RAB 92.6 0.038 1.3E-06 44.6 1.5 24 58-81 8-31 (183)
492 2gco_A H9, RHO-related GTP-bin 92.6 0.067 2.3E-06 44.1 3.0 25 58-82 25-49 (201)
493 2h57_A ADP-ribosylation factor 92.6 0.047 1.6E-06 44.5 2.1 26 57-82 20-45 (190)
494 1zcb_A G alpha I/13; GTP-bindi 92.5 0.075 2.6E-06 48.6 3.6 23 57-79 32-54 (362)
495 3io3_A DEHA2D07832P; chaperone 92.5 0.075 2.6E-06 48.4 3.5 26 57-82 17-42 (348)
496 3q3j_B RHO-related GTP-binding 92.5 0.067 2.3E-06 44.7 2.9 25 58-82 27-51 (214)
497 3def_A T7I23.11 protein; chlor 92.4 0.18 6.3E-06 43.6 5.7 37 46-82 23-60 (262)
498 3zq6_A Putative arsenical pump 92.4 0.13 4.4E-06 46.2 4.8 26 58-83 14-39 (324)
499 4dhe_A Probable GTP-binding pr 92.3 0.055 1.9E-06 45.2 2.3 26 57-82 28-53 (223)
500 3ozx_A RNAse L inhibitor; ATP 92.2 0.079 2.7E-06 51.2 3.4 26 57-82 24-49 (538)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.8e-43 Score=347.55 Aligned_cols=279 Identities=14% Similarity=0.081 Sum_probs=218.2
Q ss_pred CccccccchhHHHHHHHHHhhcC--CCcEEEEEEeCCCchHHHHHHHHHh--hhhcccCCcceEEEEEecCCC-------
Q 039134 33 DTLSVKKGMESILDEVWECFEDD--FPMRIICLYGVSGVGKTTLLVNFNS--KFSDTRHNFYLVILVKAVDNK------- 101 (339)
Q Consensus 33 ~~~~~~vGR~~~~~~l~~~l~~~--~~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~~~~f~~~~wv~~~~~~------- 101 (339)
|..+..|||+.++++|.++|..+ +..++|+|+||||+||||||+++|+ +. +.+.+|+.++|++++...
T Consensus 125 p~~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~ 203 (549)
T 2a5y_B 125 PKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDL 203 (549)
T ss_dssp BCCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHH
T ss_pred CCCCccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHH
Confidence 33444369999999999999753 3579999999999999999999998 33 557899999999886421
Q ss_pred -----------------------CHHHHHHHHHHHhcCC-ceEEEEecCCCCCCcccccCCCCCCceEEEeCCChHHHhh
Q 039134 102 -----------------------NQQGRAEEIFQRLSQR-RFALLLDDLRGPINLDEAGVPDQNGSKIVFTTIMEDACNT 157 (339)
Q Consensus 102 -----------------------~~~~~~~~l~~~l~~k-~~LlvlDdv~~~~~l~~l~~~~~~~~~ilvTsR~~~~~~~ 157 (339)
+.+.....+++.++++ ++||||||+|+.+++ .+ +...||+||||||+..++..
T Consensus 204 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~--~~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 204 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW--AQELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH--HHHTTCEEEEEESBGGGGGG
T ss_pred HHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc--cccCCCEEEEEcCCHHHHHH
Confidence 1233467788889896 999999999998765 22 22369999999999988876
Q ss_pred cC-CCceEEecCCCCcc-------CccCCC--hhHHHHHHHHHHHcCCChHHHHHHHHHhccCC------------CCCC
Q 039134 158 MG-DQIKFKVDYLRRDD-------DVLNFH--PDILELAETVADLCRGLPLAHITIGRAMANTR------------NRMG 215 (339)
Q Consensus 158 ~~-~~~~~~l~~L~~~~-------~~~~~~--~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~~------------~~~~ 215 (339)
++ ....++|++|+.++ ..+... +...+.+.+|+++|+|+||||+.+|+.|+.+. ....
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGL 360 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCS
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccH
Confidence 65 34679999999988 222222 56778999999999999999999999987654 1123
Q ss_pred cChhHHHHHhhcCCCcchhhHHHh-----------HhcccCCCCcccHHHHHHHHHHc--CCCccCCchhhHHHHHHHHH
Q 039134 216 DLILPRLKFSYDHLSTETHKTCFS-----------FCSLFLKNQLIRKDELVDLWIGE--GLFRGSHNIVVARMQGKCII 282 (339)
Q Consensus 216 ~~~~~~l~~~~~~L~~~~~k~~~~-----------~la~f~~~~~i~~~~li~~w~a~--~~~~~~~~~~~~~~~~~~~l 282 (339)
..+...+..||+.||+ ..+.||. +||+||+++.++ +.+|+++ |++....+....++.++ +|
T Consensus 361 ~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l 434 (549)
T 2a5y_B 361 VGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL 434 (549)
T ss_dssp STTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred HHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence 4566777888888888 8888888 999999999999 7899999 88987542344556666 99
Q ss_pred HHHHhCCceeeecCCCcCeEEeChHHHHHHHHHHhcccc
Q 039134 283 DSLIGVCLLEEVQTSFGNYVKMHDLLRDLALWIASQDEG 321 (339)
Q Consensus 283 ~~L~~~sLi~~~~~~~~~~~~~H~lv~~~a~~~~~~~~~ 321 (339)
++|+++|||+....+...+|+|||+||+||++++.+++.
T Consensus 435 ~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 435 KRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 999999999987643467899999999999999888765
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-37 Score=329.64 Aligned_cols=273 Identities=19% Similarity=0.184 Sum_probs=219.5
Q ss_pred ccCccccccchhHHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCc-ceEEEEEecC---------
Q 039134 31 KVDTLSVKKGMESILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNF-YLVILVKAVD--------- 99 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~--------- 99 (339)
.++.++.||||+.++++|.++|... +..++|+|+||||+||||||++++++......+| +.++|++++.
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 3445567999999999999999642 4689999999999999999999999863224444 6888999762
Q ss_pred ------------------CCCHHHHHHHHHHHhcCC--ceEEEEecCCCCCCcccccCCCCCCceEEEeCCChHHHhh-c
Q 039134 100 ------------------NKNQQGRAEEIFQRLSQR--RFALLLDDLRGPINLDEAGVPDQNGSKIVFTTIMEDACNT-M 158 (339)
Q Consensus 100 ------------------~~~~~~~~~~l~~~l~~k--~~LlvlDdv~~~~~l~~l~~~~~~~~~ilvTsR~~~~~~~-~ 158 (339)
..+.+.....++..+.++ ++||||||+|+..+|..+ ..+++||||||++.++.. .
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~----~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF----DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT----CSSCEEEEEESSTTTTTTCC
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh----cCCCEEEEEcCCHHHHHhhc
Confidence 234456667777777766 999999999988777765 458999999999987643 3
Q ss_pred CCCceEEecC-CCCcc-------CccCCChhHHHHHHHHHHHcCCChHHHHHHHHHhccCC-----------C-------
Q 039134 159 GDQIKFKVDY-LRRDD-------DVLNFHPDILELAETVADLCRGLPLAHITIGRAMANTR-----------N------- 212 (339)
Q Consensus 159 ~~~~~~~l~~-L~~~~-------~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~~-----------~------- 212 (339)
+....+.+.+ |++++ ......+...+.+++|+++|+|+||||+++|++|+.+. .
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~ 354 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIR 354 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSS
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcc
Confidence 4557788986 98888 12233445567899999999999999999999998644 0
Q ss_pred ----CCCcChhHHHHHhhcCCCcchhhHHHhHhcccCCCCcccHHHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHHhC
Q 039134 213 ----RMGDLILPRLKFSYDHLSTETHKTCFSFCSLFLKNQLIRKDELVDLWIGEGLFRGSHNIVVARMQGKCIIDSLIGV 288 (339)
Q Consensus 213 ----~~~~~~~~~l~~~~~~L~~~~~k~~~~~la~f~~~~~i~~~~li~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~ 288 (339)
.....+..+|..||+.|++ .+|.||.+||+||+++.|+.+.++.+|.++ ++.++++|++|+++
T Consensus 355 ~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~ 421 (1249)
T 3sfz_A 355 KSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNK 421 (1249)
T ss_dssp CTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhc
Confidence 0113588999999999999 899999999999999999999999999443 25678899999999
Q ss_pred CceeeecCCCcCeEEeChHHHHHHHHHHhccc
Q 039134 289 CLLEEVQTSFGNYVKMHDLLRDLALWIASQDE 320 (339)
Q Consensus 289 sLi~~~~~~~~~~~~~H~lv~~~a~~~~~~~~ 320 (339)
|||+........+|+||+++|+||++.+.++.
T Consensus 422 sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 422 SLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp TSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred cceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 99998764334579999999999999987763
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=290.23 Aligned_cols=267 Identities=18% Similarity=0.168 Sum_probs=207.7
Q ss_pred cCccccccchhHHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcc-cCCc-ceEEEEEecCC--------
Q 039134 32 VDTLSVKKGMESILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDT-RHNF-YLVILVKAVDN-------- 100 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~f-~~~~wv~~~~~-------- 100 (339)
++.++.||||+.++++|.+++... +..++|+|+||||+||||||.+++++. +. ...| +.++|++++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCCchHHHHHH
Confidence 455678999999999999999852 357999999999999999999999876 33 4678 58999988621
Q ss_pred -------------------CCHHHHHHHHHHHhcC--CceEEEEecCCCCCCcccccCCCCCCceEEEeCCChHHHhhcC
Q 039134 101 -------------------KNQQGRAEEIFQRLSQ--RRFALLLDDLRGPINLDEAGVPDQNGSKIVFTTIMEDACNTMG 159 (339)
Q Consensus 101 -------------------~~~~~~~~~l~~~l~~--k~~LlvlDdv~~~~~l~~l~~~~~~~~~ilvTsR~~~~~~~~~ 159 (339)
.+.+.....+.+.+.+ +++||||||+|+...+..+ ..+++||+|||+..+.....
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l----~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF----DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT----CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh----cCCCeEEEECCCcHHHHhcC
Confidence 1233445556666655 7899999999987666554 45899999999988765443
Q ss_pred CCceEEe---cCCCCcc-------CccCCChhHHHHHHHHHHHcCCChHHHHHHHHHhccCCC-----------------
Q 039134 160 DQIKFKV---DYLRRDD-------DVLNFHPDILELAETVADLCRGLPLAHITIGRAMANTRN----------------- 212 (339)
Q Consensus 160 ~~~~~~l---~~L~~~~-------~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~~~----------------- 212 (339)
...+++ ++|+.++ ..........+.+.+|++.|+|+|+||.++|++++....
T Consensus 275 -~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~ 353 (591)
T 1z6t_A 275 -GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRI 353 (591)
T ss_dssp -SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCS
T ss_pred -CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHh
Confidence 344555 4788887 111222233568899999999999999999999976541
Q ss_pred -----CCCcChhHHHHHhhcCCCcchhhHHHhHhcccCCCCcccHHHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHHh
Q 039134 213 -----RMGDLILPRLKFSYDHLSTETHKTCFSFCSLFLKNQLIRKDELVDLWIGEGLFRGSHNIVVARMQGKCIIDSLIG 287 (339)
Q Consensus 213 -----~~~~~~~~~l~~~~~~L~~~~~k~~~~~la~f~~~~~i~~~~li~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~ 287 (339)
.....+..++..+|+.|++ ..+.||.++|+||.+..++.+.+..+|... ...+..++++|++
T Consensus 354 ~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~ 420 (591)
T 1z6t_A 354 RKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVN 420 (591)
T ss_dssp SCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHh
Confidence 0123688899999999999 899999999999999999999999999432 2356788999999
Q ss_pred CCceeeecCCCcCeEEeChHHHHHHHHHHh
Q 039134 288 VCLLEEVQTSFGNYVKMHDLLRDLALWIAS 317 (339)
Q Consensus 288 ~sLi~~~~~~~~~~~~~H~lv~~~a~~~~~ 317 (339)
+|||+....+...+|+||+++|+|++....
T Consensus 421 ~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 421 KSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp TTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred CcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 999997654335689999999999998843
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.4e-35 Score=299.70 Aligned_cols=253 Identities=13% Similarity=0.177 Sum_probs=197.7
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcce-EEEEEecCCCCH-----------
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYL-VILVKAVDNKNQ----------- 103 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~----------- 103 (339)
+..|||+.++++|.++|......++|+|+||||+||||||++++++. +++.+|+. ++|++++...+.
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34599999999999999874367999999999999999999999875 45678985 999998833222
Q ss_pred ---------------------HHHHHHHHHHh---cCCceEEEEecCCCCCCcccccCCCCCCceEEEeCCChHHHhhcC
Q 039134 104 ---------------------QGRAEEIFQRL---SQRRFALLLDDLRGPINLDEAGVPDQNGSKIVFTTIMEDACNTMG 159 (339)
Q Consensus 104 ---------------------~~~~~~l~~~l---~~k~~LlvlDdv~~~~~l~~l~~~~~~~~~ilvTsR~~~~~~~~~ 159 (339)
+.....+.+.+ .++++||||||+|+.++|+.+. .||+||||||+..++....
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~----pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN----LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH----SSCCEEEECSCSHHHHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC----CCeEEEEeccChHHHHhcC
Confidence 12233444444 5799999999999988887763 5899999999998765333
Q ss_pred CCceEEec------CCCCcc------CccCCChhHHHHHHHHHHHcCCChHHHHHHHHHhccCC-------CCCCcChhH
Q 039134 160 DQIKFKVD------YLRRDD------DVLNFHPDILELAETVADLCRGLPLAHITIGRAMANTR-------NRMGDLILP 220 (339)
Q Consensus 160 ~~~~~~l~------~L~~~~------~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~~~~-------~~~~~~~~~ 220 (339)
....+.++ +|+.++ ..+... ..++.. +.|+|+||||.++|+.|+.+. ......+..
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~eeL~~---eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~a 357 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--PQDLPR---EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--TTTHHH---HHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHH
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCC--HHHHHH---HHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHH
Confidence 22346666 888888 111111 222333 349999999999999998873 112457899
Q ss_pred HHHHhhcCCCcchh-hHHHhHhcccCCCCcccHHHHHHHHHHcCCCccCCchhhHHHHHHHHHHHHHhCCceeeecCCCc
Q 039134 221 RLKFSYDHLSTETH-KTCFSFCSLFLKNQLIRKDELVDLWIGEGLFRGSHNIVVARMQGKCIIDSLIGVCLLEEVQTSFG 299 (339)
Q Consensus 221 ~l~~~~~~L~~~~~-k~~~~~la~f~~~~~i~~~~li~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~~~ 299 (339)
+|..||+.|++ .. |.||.+||+||++..|+.+.++.+|+++| ++.++.+|++|+++|||+.... .
T Consensus 358 aLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~~--~ 423 (1221)
T 1vt4_I 358 IIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQPK--E 423 (1221)
T ss_dssp HHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCSS--S
T ss_pred HHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeCC--C
Confidence 99999999999 78 99999999999999999999999998776 1257789999999999998632 6
Q ss_pred CeEEeChHHHHHH
Q 039134 300 NYVKMHDLLRDLA 312 (339)
Q Consensus 300 ~~~~~H~lv~~~a 312 (339)
.+|+||+|+++++
T Consensus 424 ~rYrMHDLllELr 436 (1221)
T 1vt4_I 424 STISIPSIYLELK 436 (1221)
T ss_dssp SEEBCCCHHHHHH
T ss_pred CEEEehHHHHHHh
Confidence 8999999998855
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.71 E-value=1.1e-16 Score=147.40 Aligned_cols=254 Identities=15% Similarity=0.069 Sum_probs=156.6
Q ss_pred ccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC-------------
Q 039134 34 TLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN------------- 100 (339)
Q Consensus 34 ~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~------------- 100 (339)
.++.||||+.++++|.+++..+ ++++|+|++|+|||+|++++++.. + .+|+.+...
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~---~~v~i~G~~G~GKT~Ll~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY---PLTLLLGIRRVGKSSLLRAFLNER----P----GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHS----S----EEEEEHHHHHHTTTCBCHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC---CeEEEECCCcCCHHHHHHHHHHHc----C----cEEEEeecccccccCCCHHHHH
Confidence 3467899999999999999875 799999999999999999998875 1 556654311
Q ss_pred --------------------------------CCHHHHHHHHHHHhcC-CceEEEEecCCCCCC---------cccccC-
Q 039134 101 --------------------------------KNQQGRAEEIFQRLSQ-RRFALLLDDLRGPIN---------LDEAGV- 137 (339)
Q Consensus 101 --------------------------------~~~~~~~~~l~~~l~~-k~~LlvlDdv~~~~~---------l~~l~~- 137 (339)
.........+....+. ++++||+||++.... +..+..
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 1122223333333322 389999999976432 111110
Q ss_pred -CCCCCceEEEeCCChHHHhh-----------cCC-CceEEecCCCCcc------Ccc--CCChhHHHHHHHHHHHcCCC
Q 039134 138 -PDQNGSKIVFTTIMEDACNT-----------MGD-QIKFKVDYLRRDD------DVL--NFHPDILELAETVADLCRGL 196 (339)
Q Consensus 138 -~~~~~~~ilvTsR~~~~~~~-----------~~~-~~~~~l~~L~~~~------~~~--~~~~~~~~~~~~i~~~~~G~ 196 (339)
....+..+|+|++....... .+. ...+.+.+|+.++ ..+ .......+.+..+++.|+|+
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGI 238 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTC
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 02357888898887543211 111 2479999999988 111 11122356788999999999
Q ss_pred hHHHHHHHHHhccC-C-----CCCCcChhHHHHHhhcCC---CcchhhHHHhHhcccCCCCcccHHHHHHHHHHcCCCcc
Q 039134 197 PLAHITIGRAMANT-R-----NRMGDLILPRLKFSYDHL---STETHKTCFSFCSLFLKNQLIRKDELVDLWIGEGLFRG 267 (339)
Q Consensus 197 Plal~~~~~~L~~~-~-----~~~~~~~~~~l~~~~~~L---~~~~~k~~~~~la~f~~~~~i~~~~li~~w~a~~~~~~ 267 (339)
|+++..++..+... . ....+.....+...+..+ ++ ..+.++..+|+ . ..+...+....... .- .
T Consensus 239 P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~l~~la~-g---~~~~~~l~~~~~~~-~~-~ 311 (350)
T 2qen_A 239 PGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSP-RYVDILRAIAL-G---YNRWSLIRDYLAVK-GT-K 311 (350)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHT-T---CCSHHHHHHHHHHT-TC-C
T ss_pred HHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCCh-hHHHHHHHHHh-C---CCCHHHHHHHHHHH-hC-C
Confidence 99999988764321 1 001111222233334444 56 78888888887 2 23444444332221 00 1
Q ss_pred CCchhhHHHHHHHHHHHHHhCCceeeecCCCcCeEEeChHHHHHHH
Q 039134 268 SHNIVVARMQGKCIIDSLIGVCLLEEVQTSFGNYVKMHDLLRDLAL 313 (339)
Q Consensus 268 ~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~~~~~~~~H~lv~~~a~ 313 (339)
........+++.|.+.+||...+ ..+...|++++.|.+
T Consensus 312 -----~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 312 -----IPEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp -----CCHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred -----CCHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 11245668899999999998863 334455789888764
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.69 E-value=2.9e-16 Score=144.87 Aligned_cols=249 Identities=11% Similarity=0.079 Sum_probs=150.3
Q ss_pred ccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC-----CCHHH---
Q 039134 34 TLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN-----KNQQG--- 105 (339)
Q Consensus 34 ~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~--- 105 (339)
.++.||||+.++++|.+ +.. ++++|+|++|+|||+|++++++... . ..+|+..... .+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----~~v~i~G~~G~GKT~L~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----PITLVLGLRRTGKSSIIKIGINELN---L---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----SEEEEEESTTSSHHHHHHHHHHHHT---C---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC----CcEEEECCCCCCHHHHHHHHHHhcC---C---CEEEEEchhhccccCCCHHHHHH
Confidence 34678999999999999 764 5999999999999999999998862 2 2466665421 11111
Q ss_pred -------------------------------------------HHHHHHHHhcC---CceEEEEecCCCCC-----Cccc
Q 039134 106 -------------------------------------------RAEEIFQRLSQ---RRFALLLDDLRGPI-----NLDE 134 (339)
Q Consensus 106 -------------------------------------------~~~~l~~~l~~---k~~LlvlDdv~~~~-----~l~~ 134 (339)
....+.+.+.. ++++|||||++... ++..
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 11222223321 48999999996532 2222
Q ss_pred ccCC---CCCCceEEEeCCChHHHhh----------c-CC-CceEEecCCCCcc------Ccc---CCChhHHHHHHHHH
Q 039134 135 AGVP---DQNGSKIVFTTIMEDACNT----------M-GD-QIKFKVDYLRRDD------DVL---NFHPDILELAETVA 190 (339)
Q Consensus 135 l~~~---~~~~~~ilvTsR~~~~~~~----------~-~~-~~~~~l~~L~~~~------~~~---~~~~~~~~~~~~i~ 190 (339)
+... ...+..+|+|++....... . +. ...+.+.+|+.++ ... ..... . ...++
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~-~~~i~ 236 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK--D-YEVVY 236 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--C-HHHHH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC--c-HHHHH
Confidence 2111 2247889999987643221 1 11 2578999999988 110 11111 1 17899
Q ss_pred HHcCCChHHHHHHHHHhccCC------CCCCcChhHHHHHhhc-------CCCcchhhHHHhHhcccCCCCcccHHHHHH
Q 039134 191 DLCRGLPLAHITIGRAMANTR------NRMGDLILPRLKFSYD-------HLSTETHKTCFSFCSLFLKNQLIRKDELVD 257 (339)
Q Consensus 191 ~~~~G~Plal~~~~~~L~~~~------~~~~~~~~~~l~~~~~-------~L~~~~~k~~~~~la~f~~~~~i~~~~li~ 257 (339)
+.|+|+|+++..++..+.... ....+.....+...+. .|++ ..+.++..+|+ . . +...+..
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~-g---~-~~~~l~~ 310 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARK-RYLNIMRTLSK-C---G-KWSDVKR 310 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT-C---B-CHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHc-C---C-CHHHHHH
Confidence 999999999999988764321 0000111122222222 5777 78899999887 2 2 3344332
Q ss_pred HHH-HcCCCccCCchhhHHHHHHHHHHHHHhCCceeeecCCCcCeEEeChHHHHHH
Q 039134 258 LWI-GEGLFRGSHNIVVARMQGKCIIDSLIGVCLLEEVQTSFGNYVKMHDLLRDLA 312 (339)
Q Consensus 258 ~w~-a~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~~~~~~~~H~lv~~~a 312 (339)
... ..|. .........+++.|.+.+||.... ..+...|++++++.
T Consensus 311 ~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 311 ALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred HHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 110 1121 011235667899999999998763 33444688998875
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.56 E-value=3.8e-15 Score=140.45 Aligned_cols=267 Identities=13% Similarity=0.104 Sum_probs=154.2
Q ss_pred cccccchhHHHHHHHHHh-hc---C--CCcEEEEE--EeCCCchHHHHHHHHHhhhhcc--cCCcc-eEEEEEecC----
Q 039134 35 LSVKKGMESILDEVWECF-ED---D--FPMRIICL--YGVSGVGKTTLLVNFNSKFSDT--RHNFY-LVILVKAVD---- 99 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l-~~---~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~--~~~f~-~~~wv~~~~---- 99 (339)
++.++||+.++++|...+ .. + ...+.++| +|++|+|||+|++.+++..... ...+. .++|+.+..
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467899999999999998 42 1 24578888 9999999999999999887311 01122 356777531
Q ss_pred ------------------CCCHHHHHHHHHHHhc--CCceEEEEecCCCCC--------Cccccc-CC---C--C--CCc
Q 039134 100 ------------------NKNQQGRAEEIFQRLS--QRRFALLLDDLRGPI--------NLDEAG-VP---D--Q--NGS 143 (339)
Q Consensus 100 ------------------~~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~--------~l~~l~-~~---~--~--~~~ 143 (339)
..+.......+.+.+. +++++|||||++... .+..+. .. . + .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 1123344555555554 679999999996532 122111 11 1 2 455
Q ss_pred eEEEeCCChHHHhhc---------CCCceEEecCCCCcc--C--------ccCCChhHHHHHHHHHHHcC------CChH
Q 039134 144 KIVFTTIMEDACNTM---------GDQIKFKVDYLRRDD--D--------VLNFHPDILELAETVADLCR------GLPL 198 (339)
Q Consensus 144 ~ilvTsR~~~~~~~~---------~~~~~~~l~~L~~~~--~--------~~~~~~~~~~~~~~i~~~~~------G~Pl 198 (339)
.+|+||+........ .....+.+.+++.++ . .........+.+..+++.|+ |+|.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 577788755432111 112338999999888 1 11112234667889999999 9997
Q ss_pred HHHHHHHHh-c----cCCCCCC-cCh---------hHHHHHhhcCCCcchhhHHHhHhcccC--CCCcccHHHHHHHHHH
Q 039134 199 AHITIGRAM-A----NTRNRMG-DLI---------LPRLKFSYDHLSTETHKTCFSFCSLFL--KNQLIRKDELVDLWIG 261 (339)
Q Consensus 199 al~~~~~~L-~----~~~~~~~-~~~---------~~~l~~~~~~L~~~~~k~~~~~la~f~--~~~~i~~~~li~~w~a 261 (339)
.+..++... . ....... ..+ ...+..++..||+ ..+.++..++.+. .+..++...+...|..
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~ 339 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSI-HELIILRLIAEATLGGMEWINAGLLRQRYED 339 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 666554322 1 1111111 111 1233445578888 8899998888753 2334555444443321
Q ss_pred -----cCCCccCCchhhHHHHHHHHHHHHHhCCceeeecCC--CcCeEEeChHH
Q 039134 262 -----EGLFRGSHNIVVARMQGKCIIDSLIGVCLLEEVQTS--FGNYVKMHDLL 308 (339)
Q Consensus 262 -----~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~--~~~~~~~H~lv 308 (339)
.|. .+ ........+++.|.+.+||...... ..+.|.+|.|.
T Consensus 340 ~~~~~~~~-~~-----~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 340 ASLTMYNV-KP-----RGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHSCC-CC-----CCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHhhcCC-CC-----CCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 111 11 1124556789999999999876431 24445555443
No 8
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.36 E-value=5.3e-12 Score=109.34 Aligned_cols=173 Identities=13% Similarity=0.152 Sum_probs=107.8
Q ss_pred ccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccC------------------CcceEEEE
Q 039134 34 TLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH------------------NFYLVILV 95 (339)
Q Consensus 34 ~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv 95 (339)
....++||+.+++.+..++..+...+.++|+|++|+|||+||+.+++....... .+.....+
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 100 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence 345689999999999999988634568999999999999999999987731110 01112222
Q ss_pred EecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCC--CcccccC---CCCCCceEEEeCCChHHH--hhcCCCce
Q 039134 96 KAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPI--NLDEAGV---PDQNGSKIVFTTIMEDAC--NTMGDQIK 163 (339)
Q Consensus 96 ~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~--~l~~l~~---~~~~~~~ilvTsR~~~~~--~~~~~~~~ 163 (339)
..... ........+.+.+ .+++.+||+||++... .+..+.. ....+..+|+||+..... ........
T Consensus 101 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~ 179 (250)
T 1njg_A 101 DAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 179 (250)
T ss_dssp ETTCG-GGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred cCccc-ccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhh
Confidence 21111 1222233333333 3467999999997643 2333311 134567777777654321 11123467
Q ss_pred EEecCCCCcc-----C-c--cCCChhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039134 164 FKVDYLRRDD-----D-V--LNFHPDILELAETVADLCRGLPLAHITIGRAM 207 (339)
Q Consensus 164 ~~l~~L~~~~-----~-~--~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L 207 (339)
+.+.+++.++ . . ........+..+.+++.|+|+|..+..+...+
T Consensus 180 i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 180 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999887 1 0 01122335677889999999999888776544
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.34 E-value=1.7e-10 Score=107.52 Aligned_cols=252 Identities=16% Similarity=0.090 Sum_probs=149.5
Q ss_pred cccccchhHHHHHHHHHhhc---CCCcE--EEEEEeCCCchHHHHHHHHHhhhhcccCC-cceEEEEEecCCCC------
Q 039134 35 LSVKKGMESILDEVWECFED---DFPMR--IICLYGVSGVGKTTLLVNFNSKFSDTRHN-FYLVILVKAVDNKN------ 102 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~---~~~~~--~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~------ 102 (339)
++.++||+.+++++..++.. +.... .++|+|++|+|||||++.+++... .. -..++++......+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK---DKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT---TSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh---hhcCeeEEEEeCccCCCHHHHHH
Confidence 36789999999999999876 22334 899999999999999999998873 22 12456666443222
Q ss_pred ----------------HHHHHHHHHHHhc--CCceEEEEecCCCCCC--cccc---cCC-CC---CCceEEEeCCChHHH
Q 039134 103 ----------------QQGRAEEIFQRLS--QRRFALLLDDLRGPIN--LDEA---GVP-DQ---NGSKIVFTTIMEDAC 155 (339)
Q Consensus 103 ----------------~~~~~~~l~~~l~--~k~~LlvlDdv~~~~~--l~~l---~~~-~~---~~~~ilvTsR~~~~~ 155 (339)
.......+.+.+. +++.+|+||+++.... +..+ ... .. .+..+|++|+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 2333344444443 5688999999976532 2222 111 11 467777777765332
Q ss_pred hhcC-------CCceEEecCCCCcc----------CccCCChhHHHHHHHHHHHc---------CCChHHHHHHHHHhcc
Q 039134 156 NTMG-------DQIKFKVDYLRRDD----------DVLNFHPDILELAETVADLC---------RGLPLAHITIGRAMAN 209 (339)
Q Consensus 156 ~~~~-------~~~~~~l~~L~~~~----------~~~~~~~~~~~~~~~i~~~~---------~G~Plal~~~~~~L~~ 209 (339)
.... ....+.+.+++.++ .......-..+..+.+++.+ +|.|..+..+......
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 2111 12368999999887 11112233466788899999 7887655544332211
Q ss_pred -----CCCCC-CcChhHHH--------HHhhcCCCcchhhHHHhHhcccC---CCCcccHHHHHHHHHH----cCCCccC
Q 039134 210 -----TRNRM-GDLILPRL--------KFSYDHLSTETHKTCFSFCSLFL---KNQLIRKDELVDLWIG----EGLFRGS 268 (339)
Q Consensus 210 -----~~~~~-~~~~~~~l--------~~~~~~L~~~~~k~~~~~la~f~---~~~~i~~~~li~~w~a----~~~~~~~ 268 (339)
..... .+.+...+ ...+..|+. ..+.++..++.+. .+..+....+...+.. .|. .+
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~- 329 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE-RP- 329 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC-CC-
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC-CC-
Confidence 11111 11122222 223556777 7777777777654 2224555555554432 221 11
Q ss_pred CchhhHHHHHHHHHHHHHhCCceeeecC
Q 039134 269 HNIVVARMQGKCIIDSLIGVCLLEEVQT 296 (339)
Q Consensus 269 ~~~~~~~~~~~~~l~~L~~~sLi~~~~~ 296 (339)
........+++.|.+.|+|.....
T Consensus 330 ----~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 330 ----RVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp ----CCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred ----CCHHHHHHHHHHHHhCCCeEEeee
Confidence 112456688999999999998653
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=6.5e-12 Score=116.84 Aligned_cols=254 Identities=11% Similarity=0.080 Sum_probs=145.4
Q ss_pred cccccchhHHHHHHHHHhhc---CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC------------
Q 039134 35 LSVKKGMESILDEVWECFED---DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD------------ 99 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~------------ 99 (339)
+..++||+.+++.+.+++.. ......++|+|++|+||||||+.+++........-..++|+....
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999874 335679999999999999999999988731111022456666431
Q ss_pred ----------CCCHHHHHHHHHHHhc--CCceEEEEecCCCC------CCccccc-CC---CCCCceEEEeCCChHHHhh
Q 039134 100 ----------NKNQQGRAEEIFQRLS--QRRFALLLDDLRGP------INLDEAG-VP---DQNGSKIVFTTIMEDACNT 157 (339)
Q Consensus 100 ----------~~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~------~~l~~l~-~~---~~~~~~ilvTsR~~~~~~~ 157 (339)
..+.......+...+. +++.+||||+++.. ..+..+. .. ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 1124444555666654 45899999999543 2222221 01 2335566777775532211
Q ss_pred cC-------CCceEEecCCCCcc------C----ccCCChhHHHHHHHHHHHcC---CChHHHHHHHHHh-c----cCCC
Q 039134 158 MG-------DQIKFKVDYLRRDD------D----VLNFHPDILELAETVADLCR---GLPLAHITIGRAM-A----NTRN 212 (339)
Q Consensus 158 ~~-------~~~~~~l~~L~~~~------~----~~~~~~~~~~~~~~i~~~~~---G~Plal~~~~~~L-~----~~~~ 212 (339)
.. ....+.+.+++.++ . .........+..+.+++.++ |.|..+..+.... . ....
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 11 11479999999887 1 11122334566677777777 9998444333222 1 1111
Q ss_pred CCCc-C--------hhHHHHHhhcCCCcchhhHHHhHhcccCC-C-CcccHHHHHHHHH----HcCCCccCCchhhHHHH
Q 039134 213 RMGD-L--------ILPRLKFSYDHLSTETHKTCFSFCSLFLK-N-QLIRKDELVDLWI----GEGLFRGSHNIVVARMQ 277 (339)
Q Consensus 213 ~~~~-~--------~~~~l~~~~~~L~~~~~k~~~~~la~f~~-~-~~i~~~~li~~w~----a~~~~~~~~~~~~~~~~ 277 (339)
.... . ....+...+..|+. ..+..+..++.+.. + ..+....+...+. ..| ..+ .....
T Consensus 259 ~i~~~~v~~a~~~~~~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~-----~~~~~ 331 (386)
T 2qby_A 259 KVKEEYVYMAKEEIERDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEA-----VTQRR 331 (386)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCC-----CCHHH
T ss_pred ccCHHHHHHHHHHHhhchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCC-----CCHHH
Confidence 1111 1 11345566778888 77777777764321 1 2233433322221 122 111 11235
Q ss_pred HHHHHHHHHhCCceeeec
Q 039134 278 GKCIIDSLIGVCLLEEVQ 295 (339)
Q Consensus 278 ~~~~l~~L~~~sLi~~~~ 295 (339)
...+++.|.+.|+|+...
T Consensus 332 ~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 332 VSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 667899999999998753
No 11
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.33 E-value=1.4e-11 Score=105.34 Aligned_cols=168 Identities=11% Similarity=0.074 Sum_probs=106.8
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcc-eEEEEEecCCCCHHHHHHHHHHH
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFY-LVILVKAVDNKNQQGRAEEIFQR 113 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~~~ 113 (339)
...++||+..++++.+++... ..+.++|+|++|+|||++|+.+++.... ..+. ..+.+..............+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLFG--ENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT-CCCCEEEECSTTSSHHHHHHHHHHHHHG--GGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHhc--cccccceEEeccccccChHHHHHHHHHH
Confidence 356899999999999999886 4445999999999999999999987631 1222 23444444444444444444444
Q ss_pred hc------CCceEEEEecCCCCCC--ccccc--CC-CCCCceEEEeCCChHHH--hhcCCCceEEecCCCCcc-----Cc
Q 039134 114 LS------QRRFALLLDDLRGPIN--LDEAG--VP-DQNGSKIVFTTIMEDAC--NTMGDQIKFKVDYLRRDD-----DV 175 (339)
Q Consensus 114 l~------~k~~LlvlDdv~~~~~--l~~l~--~~-~~~~~~ilvTsR~~~~~--~~~~~~~~~~l~~L~~~~-----~~ 175 (339)
.. +++.+|++||++.... ...+. .. ...++.+|+||+..... ........+.+.+++.++ ..
T Consensus 93 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~ 172 (226)
T 2chg_A 93 ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLE 172 (226)
T ss_dssp HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHH
Confidence 32 5788999999976532 22221 11 34567788887765321 111223478899999877 10
Q ss_pred -c--CCChhHHHHHHHHHHHcCCChHHHHHHHH
Q 039134 176 -L--NFHPDILELAETVADLCRGLPLAHITIGR 205 (339)
Q Consensus 176 -~--~~~~~~~~~~~~i~~~~~G~Plal~~~~~ 205 (339)
. .......+....+++.++|+|..+..+..
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 173 ICEKEGVKITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 0 01122356677888999999986554443
No 12
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=2.4e-11 Score=113.26 Aligned_cols=252 Identities=13% Similarity=-0.016 Sum_probs=146.2
Q ss_pred cccccchhHHHHHHHHHhhc---CCCcEEEEEEeCCCchHHHHHHHHHhhhhcc---cCC--cceEEEEEecCCC-----
Q 039134 35 LSVKKGMESILDEVWECFED---DFPMRIICLYGVSGVGKTTLLVNFNSKFSDT---RHN--FYLVILVKAVDNK----- 101 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~~--f~~~~wv~~~~~~----- 101 (339)
+..++||+.+++++..++.. +...+.+.|+|++|+|||+||+.+++..... ... ...++|+......
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 36789999999999988765 3356799999999999999999999886321 011 2345676643211
Q ss_pred -------------------CHHHHHHHHHHHhcCCceEEEEecCCCCCC-------cccccCCCCCCceEEEeCCChHHH
Q 039134 102 -------------------NQQGRAEEIFQRLSQRRFALLLDDLRGPIN-------LDEAGVPDQNGSKIVFTTIMEDAC 155 (339)
Q Consensus 102 -------------------~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~-------l~~l~~~~~~~~~ilvTsR~~~~~ 155 (339)
+.......+...+..++.+|||||++.... +..+.... .+..+|+||+.....
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchH
Confidence 123445556666666666999999965321 22221112 677888888865211
Q ss_pred ----hh--cCCCceEEecCCCCcc------C----ccCCChhHHHHHHHHHHHcC---CChH-HHHHHHHHh--ccCCCC
Q 039134 156 ----NT--MGDQIKFKVDYLRRDD------D----VLNFHPDILELAETVADLCR---GLPL-AHITIGRAM--ANTRNR 213 (339)
Q Consensus 156 ----~~--~~~~~~~~l~~L~~~~------~----~~~~~~~~~~~~~~i~~~~~---G~Pl-al~~~~~~L--~~~~~~ 213 (339)
.. ......+.+.+++.++ . .+.......+..+.+++.|+ |.|. ++..+-... ......
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~ 257 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGI 257 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 00 0112389999998888 1 22222233556777888887 9887 444433332 211111
Q ss_pred CC-cCh--------hHHHHHhhcCCCcchhhHHHhHhcccCCCCcccHHHHHHHHHHcCCCccCCchhhHHHHHHHHHHH
Q 039134 214 MG-DLI--------LPRLKFSYDHLSTETHKTCFSFCSLFLKNQLIRKDELVDLWIGEGLFRGSHNIVVARMQGKCIIDS 284 (339)
Q Consensus 214 ~~-~~~--------~~~l~~~~~~L~~~~~k~~~~~la~f~~~~~i~~~~li~~w~a~~~~~~~~~~~~~~~~~~~~l~~ 284 (339)
.. +.+ ...+..++..|++ ..+..+..++....+..+. +......-..| ..+ .......+++..
T Consensus 258 i~~~~v~~~~~~~~~~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~-----~~~~~~~~~l~~ 329 (384)
T 2qby_B 258 IRKEHVDKAIVDYEQERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP-----LSYRRFSDIISE 329 (384)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC-----CCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcchHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC-----CCHHHHHHHHHH
Confidence 11 111 1234455678887 7777777777611101111 12222222223 111 122456788999
Q ss_pred HHhCCceeeec
Q 039134 285 LIGVCLLEEVQ 295 (339)
Q Consensus 285 L~~~sLi~~~~ 295 (339)
|.++|+|+...
T Consensus 330 L~~~gli~~~~ 340 (384)
T 2qby_B 330 LDMFGIVKIRI 340 (384)
T ss_dssp HHHTTSEEEEE
T ss_pred HHhCCCEEEEe
Confidence 99999998864
No 13
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.27 E-value=1.5e-11 Score=114.41 Aligned_cols=253 Identities=15% Similarity=0.086 Sum_probs=145.8
Q ss_pred cccccchhHHHHHHHHHhhc---CCCcEEEEEEeCCCchHHHHHHHHHhhhhccc---CCcceEEEEEecCCC-------
Q 039134 35 LSVKKGMESILDEVWECFED---DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR---HNFYLVILVKAVDNK------- 101 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~------- 101 (339)
++.++||+.+++++..++.. ....+.++|+|++|+|||+||+.+++...... ..-...+|+......
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 46789999999999999854 23567899999999999999999998873110 001235566644221
Q ss_pred ---------------CHHHHHHHHHHHhc--CCceEEEEecCCCCCC-------cccc-cCCC----CCCceEEEeCCCh
Q 039134 102 ---------------NQQGRAEEIFQRLS--QRRFALLLDDLRGPIN-------LDEA-GVPD----QNGSKIVFTTIME 152 (339)
Q Consensus 102 ---------------~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~~-------l~~l-~~~~----~~~~~ilvTsR~~ 152 (339)
+.......+...+. +++.+|+||+++.... +..+ .... ..+..+|.||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 23444555555653 4688999999975421 1111 1111 4566777777664
Q ss_pred HH--------HhhcCCCceEEecCCCCcc---------C-ccCCChhHHHHHHHHHHHcC---CChHHHH-HHHHHhc--
Q 039134 153 DA--------CNTMGDQIKFKVDYLRRDD---------D-VLNFHPDILELAETVADLCR---GLPLAHI-TIGRAMA-- 208 (339)
Q Consensus 153 ~~--------~~~~~~~~~~~l~~L~~~~---------~-~~~~~~~~~~~~~~i~~~~~---G~Plal~-~~~~~L~-- 208 (339)
.. ...+ ....+.+.+++.++ . .........+..+.+++.++ |.|..+. .+..+..
T Consensus 178 ~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 178 GFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIA 256 (387)
T ss_dssp TTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 21 1111 11468899999887 1 11222233456677888888 9994433 3222221
Q ss_pred -c-CCCCCC-cC--------hhHHHHHhhcCCCcchhhHHHhHhc-ccCCCCcccHHHHHHHHH----HcCCCccCCchh
Q 039134 209 -N-TRNRMG-DL--------ILPRLKFSYDHLSTETHKTCFSFCS-LFLKNQLIRKDELVDLWI----GEGLFRGSHNIV 272 (339)
Q Consensus 209 -~-~~~~~~-~~--------~~~~l~~~~~~L~~~~~k~~~~~la-~f~~~~~i~~~~li~~w~----a~~~~~~~~~~~ 272 (339)
. ...... +. ....+..++..|+. ..+..+..++ ++.....+....+.+... ..| ..+
T Consensus 257 ~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----- 329 (387)
T 2v1u_A 257 ERRREERVRREHVYSARAEIERDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEH----- 329 (387)
T ss_dssp HHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCC-----
T ss_pred HHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCC-----
Confidence 1 111111 11 12234455678888 6777766666 343223455554433332 223 111
Q ss_pred hHHHHHHHHHHHHHhCCceeeec
Q 039134 273 VARMQGKCIIDSLIGVCLLEEVQ 295 (339)
Q Consensus 273 ~~~~~~~~~l~~L~~~sLi~~~~ 295 (339)
.....+..+++.|...|+++...
T Consensus 330 ~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 330 VTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCeEEEe
Confidence 12356778899999999999864
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=9.4e-11 Score=106.44 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=106.4
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCc-ceEEEEEecCCCCHHHHHHHH
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNF-YLVILVKAVDNKNQQGRAEEI 110 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~l 110 (339)
+.....++||+..++.+.+++..+ ..+.++|+|++|+|||++|+.+++.... ..+ ..++++........+.....+
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~i~~~~ 93 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDG-NMPHMIISGMPGIGKTTSVHCLAHELLG--RSYADGVLELNASDDRGIDVVRNQI 93 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSC-CCCCEEEECSTTSSHHHHHHHHHHHHHG--GGHHHHEEEECTTSCCSHHHHHTHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhcC--CcccCCEEEecCccccChHHHHHHH
Confidence 334456899999999999999886 4444999999999999999999988631 112 124444433333444444334
Q ss_pred HHHh-------cCCceEEEEecCCCCCC--ccccc---CCCCCCceEEEeCCChHH--HhhcCCCceEEecCCCCcc--C
Q 039134 111 FQRL-------SQRRFALLLDDLRGPIN--LDEAG---VPDQNGSKIVFTTIMEDA--CNTMGDQIKFKVDYLRRDD--D 174 (339)
Q Consensus 111 ~~~l-------~~k~~LlvlDdv~~~~~--l~~l~---~~~~~~~~ilvTsR~~~~--~~~~~~~~~~~l~~L~~~~--~ 174 (339)
.... .+++.++|+||++.... ...+. .....++.+|+||+.... .........+.+.+++.++ .
T Consensus 94 ~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~ 173 (323)
T 1sxj_B 94 KHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLK 173 (323)
T ss_dssp HHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHH
Confidence 3333 34588999999976532 22221 113456677777765422 1111234578999999887 1
Q ss_pred cc------CCChhHHHHHHHHHHHcCCChHH-HHHHHH
Q 039134 175 VL------NFHPDILELAETVADLCRGLPLA-HITIGR 205 (339)
Q Consensus 175 ~~------~~~~~~~~~~~~i~~~~~G~Pla-l~~~~~ 205 (339)
.. .......+.+..+++.|+|.|.. +..+..
T Consensus 174 ~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 174 RLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 00 11123356778899999999954 444433
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.08 E-value=1.1e-10 Score=106.27 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=101.6
Q ss_pred CccccccchhHHHHHHHHHhhc----CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHH
Q 039134 33 DTLSVKKGMESILDEVWECFED----DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAE 108 (339)
Q Consensus 33 ~~~~~~vGR~~~~~~l~~~l~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 108 (339)
.+...++|++..+..+..++.. +.....++|+|++|+|||++|+.+++... .. ..++..........
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~---~~---~~~~~~~~~~~~~~--- 79 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG---VN---LRVTSGPAIEKPGD--- 79 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT---CC---EEEECTTTCCSHHH---
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC---CC---EEEEeccccCChHH---
Confidence 3445689999999998888763 22457889999999999999999998872 22 23443333323332
Q ss_pred HHHHHhc---CCceEEEEecCCCCCC--ccccc---C----C--------------CCCCceEEEeCCChH-HHhh-cC-
Q 039134 109 EIFQRLS---QRRFALLLDDLRGPIN--LDEAG---V----P--------------DQNGSKIVFTTIMED-ACNT-MG- 159 (339)
Q Consensus 109 ~l~~~l~---~k~~LlvlDdv~~~~~--l~~l~---~----~--------------~~~~~~ilvTsR~~~-~~~~-~~- 159 (339)
+...+. .++.+|++|+++.... ...+. . . ...+..+|.||.... .... ..
T Consensus 80 -l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R 158 (324)
T 1hqc_A 80 -LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSR 158 (324)
T ss_dssp -HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTT
T ss_pred -HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhc
Confidence 333333 3678999999976532 11110 0 0 002345555555332 1111 11
Q ss_pred CCceEEecCCCCcc-----Cc---cCCChhHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 039134 160 DQIKFKVDYLRRDD-----DV---LNFHPDILELAETVADLCRGLPLAHITIGRAMA 208 (339)
Q Consensus 160 ~~~~~~l~~L~~~~-----~~---~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L~ 208 (339)
....+.+.+++.++ .. .....-..+....+++.++|+|..+..+...+.
T Consensus 159 ~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 159 FGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp CSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred ccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 12578899998877 00 111223356788899999999998887766654
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=6.8e-10 Score=100.90 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=104.0
Q ss_pred ccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcc-eEEEEEecCCCCHHHHHHHHHH
Q 039134 34 TLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFY-LVILVKAVDNKNQQGRAEEIFQ 112 (339)
Q Consensus 34 ~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~~ 112 (339)
+-..++|++..++.+..++..+ ..+.++|+|++|+|||++|+.+++.... ..+. ..+.+..+.....+.....+..
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTG-SMPHLLFAGPPGVGKTTAALALARELFG--ENWRHNFLELNASDERGINVIREKVKE 99 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHT-CCCEEEEESCTTSSHHHHHHHHHHHHHG--GGHHHHEEEEETTCHHHHHTTHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhcC--CcccCceEEeeccccCchHHHHHHHHH
Confidence 3456899999999999999887 4455999999999999999999988631 1111 2333332221111222222222
Q ss_pred Hh------cCCceEEEEecCCCCCC--cccccC--C-CCCCceEEEeCCChHHH-h-hcCCCceEEecCCCCcc-----C
Q 039134 113 RL------SQRRFALLLDDLRGPIN--LDEAGV--P-DQNGSKIVFTTIMEDAC-N-TMGDQIKFKVDYLRRDD-----D 174 (339)
Q Consensus 113 ~l------~~k~~LlvlDdv~~~~~--l~~l~~--~-~~~~~~ilvTsR~~~~~-~-~~~~~~~~~l~~L~~~~-----~ 174 (339)
.. .+++.++|+|+++.... ...+.. . ...++.+|+|+...... . .......+.+.+++.++ .
T Consensus 100 ~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~ 179 (327)
T 1iqp_A 100 FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLR 179 (327)
T ss_dssp HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHH
T ss_pred HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHH
Confidence 22 15688999999976532 222211 1 34567777777654321 1 11122468899998777 1
Q ss_pred ---ccCCChhHHHHHHHHHHHcCCChHHHHHHHHHh
Q 039134 175 ---VLNFHPDILELAETVADLCRGLPLAHITIGRAM 207 (339)
Q Consensus 175 ---~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~L 207 (339)
......-..+..+.+++.++|.|..+..+...+
T Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 180 YIAENEGLELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 011222345677889999999998665544433
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.97 E-value=1.4e-09 Score=90.42 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=62.3
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccC----CcceEEEEEecC----CCCHHHH
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH----NFYLVILVKAVD----NKNQQGR 106 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~----~~~~~~~ 106 (339)
...++||+.+++++.+.+... ..+.++|+|++|+|||+||+.+++....... .....+++.... .......
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF 99 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS-SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHH
T ss_pred ccccccchHHHHHHHHHHhcC-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccH
Confidence 456899999999999999876 5677899999999999999999988732110 112344444331 1222222
Q ss_pred H---HHHHHHh--cCCceEEEEecCCCC
Q 039134 107 A---EEIFQRL--SQRRFALLLDDLRGP 129 (339)
Q Consensus 107 ~---~~l~~~l--~~k~~LlvlDdv~~~ 129 (339)
. ..+...+ .+++.+|+|||++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~vl~iDe~~~l 127 (195)
T 1jbk_A 100 EERLKGVLNDLAKQEGNVILFIDELHTM 127 (195)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEEETGGGG
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeCHHHH
Confidence 2 2222222 356889999999654
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.96 E-value=3.2e-09 Score=96.09 Aligned_cols=170 Identities=12% Similarity=0.077 Sum_probs=102.4
Q ss_pred ccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcc-eEEEEEecCCCCHHHHHHHHHH
Q 039134 34 TLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFY-LVILVKAVDNKNQQGRAEEIFQ 112 (339)
Q Consensus 34 ~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~~ 112 (339)
....++|++..++.+..++..+ ..+.++|+|++|+|||++|+.+++... ...+. ..+.+..+.....+.....+..
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKE 91 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTT-CCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCTTTSSHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCC-CCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccChHHHHHHHHH
Confidence 3456899999999999998876 444499999999999999999998862 12221 2233343322222222222222
Q ss_pred Hh------cCCceEEEEecCCCCCC-----cccccCCCCCCceEEEeCCChHH-H-hhcCCCceEEecCCCCcc-----C
Q 039134 113 RL------SQRRFALLLDDLRGPIN-----LDEAGVPDQNGSKIVFTTIMEDA-C-NTMGDQIKFKVDYLRRDD-----D 174 (339)
Q Consensus 113 ~l------~~k~~LlvlDdv~~~~~-----l~~l~~~~~~~~~ilvTsR~~~~-~-~~~~~~~~~~l~~L~~~~-----~ 174 (339)
.. .+++.++|+|+++.... +..+......++.+|+||..... . ........+.+.+++.++ .
T Consensus 92 ~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 171 (319)
T 2chq_A 92 FARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171 (319)
T ss_dssp HHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHH
T ss_pred HHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHH
Confidence 21 25688999999976532 22221113345667776655431 1 111233578899998877 1
Q ss_pred ---ccCCChhHHHHHHHHHHHcCCChHHHHHHHHH
Q 039134 175 ---VLNFHPDILELAETVADLCRGLPLAHITIGRA 206 (339)
Q Consensus 175 ---~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~ 206 (339)
......-..+....+++.++|.+..+......
T Consensus 172 ~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp HHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 01112234567788889999999865544443
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.95 E-value=4.5e-09 Score=97.34 Aligned_cols=172 Identities=13% Similarity=0.147 Sum_probs=103.3
Q ss_pred ccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccC------------------CcceEEEE
Q 039134 34 TLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH------------------NFYLVILV 95 (339)
Q Consensus 34 ~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv 95 (339)
....++||+..++.+...+..+.....++|+|++|+|||++|+.+++....... .+...+.+
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEE
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEe
Confidence 345689999999999999988644568899999999999999999987731110 00012233
Q ss_pred EecCCCCHHHHHHHHHHHh-----cCCceEEEEecCCCCCC--cccc---cCCCCCCceEEEeCCChH-H-HhhcCCCce
Q 039134 96 KAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLRGPIN--LDEA---GVPDQNGSKIVFTTIMED-A-CNTMGDQIK 163 (339)
Q Consensus 96 ~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~~~--l~~l---~~~~~~~~~ilvTsR~~~-~-~~~~~~~~~ 163 (339)
........+. ...+.+.+ .+++.++|+||++.... ...+ ......+..+|++|.... + .........
T Consensus 94 ~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 172 (373)
T 1jr3_A 94 DAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 (373)
T ss_dssp ETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEE
T ss_pred cccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeE
Confidence 2222112222 22333333 24678999999976532 2222 111234555666555432 1 111223467
Q ss_pred EEecCCCCcc-----Cc---cCCChhHHHHHHHHHHHcCCChHHHHHHHHH
Q 039134 164 FKVDYLRRDD-----DV---LNFHPDILELAETVADLCRGLPLAHITIGRA 206 (339)
Q Consensus 164 ~~l~~L~~~~-----~~---~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~ 206 (339)
+.+.+++.++ .. ........+.+..+++.++|.|..+..+...
T Consensus 173 i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~ 223 (373)
T 1jr3_A 173 FHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223 (373)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 8899998887 10 0111223566788999999999987765543
No 20
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.86 E-value=1.6e-08 Score=92.62 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=97.5
Q ss_pred CccccccchhHHHHHHHHHhhc----CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHH
Q 039134 33 DTLSVKKGMESILDEVWECFED----DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAE 108 (339)
Q Consensus 33 ~~~~~~vGR~~~~~~l~~~l~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 108 (339)
.+...++|++..++++..++.. ......++|+|++|+|||+||+.+++... ..| +.+.............
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~---~~~---~~~~~~~~~~~~~~~~ 99 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS---ANI---KTTAAPMIEKSGDLAA 99 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT---CCE---EEEEGGGCCSHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC---CCe---EEecchhccchhHHHH
Confidence 3445689999999999998875 23456789999999999999999988863 222 2233222222222222
Q ss_pred HHHHHhcCCceEEEEecCCCCCC--cccc-------cCC--------------CCCCceEEEeCCChHH-Hhh-c-CCCc
Q 039134 109 EIFQRLSQRRFALLLDDLRGPIN--LDEA-------GVP--------------DQNGSKIVFTTIMEDA-CNT-M-GDQI 162 (339)
Q Consensus 109 ~l~~~l~~k~~LlvlDdv~~~~~--l~~l-------~~~--------------~~~~~~ilvTsR~~~~-~~~-~-~~~~ 162 (339)
.+. . ..++.+|+||+++.... ...+ ... ..++..+|.+|..... ... . ....
T Consensus 100 ~~~-~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~ 177 (338)
T 3pfi_A 100 ILT-N-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGM 177 (338)
T ss_dssp HHH-T-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSE
T ss_pred HHH-h-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCE
Confidence 221 1 24678999999976531 1111 000 0012445555544321 110 1 2236
Q ss_pred eEEecCCCCcc-----C---ccCCChhHHHHHHHHHHHcCCChHHHHHHHHH
Q 039134 163 KFKVDYLRRDD-----D---VLNFHPDILELAETVADLCRGLPLAHITIGRA 206 (339)
Q Consensus 163 ~~~l~~L~~~~-----~---~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~~ 206 (339)
.+.+.+++.++ . ......-..+..+.+++.+.|+|..+..+...
T Consensus 178 ~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 178 QFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 78999998877 0 01112234567788888999999766654443
No 21
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.72 E-value=2e-07 Score=88.56 Aligned_cols=167 Identities=18% Similarity=0.149 Sum_probs=99.8
Q ss_pred ccCccccccchhHHH---HHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHH
Q 039134 31 KVDTLSVKKGMESIL---DEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRA 107 (339)
Q Consensus 31 ~~~~~~~~vGR~~~~---~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 107 (339)
++.+...++|.+..+ ..|...+..+ ..+.++|+|++|+||||||+.+++... ..|. .+.. .........
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~-~~~~vLL~GppGtGKTtlAr~ia~~~~---~~f~---~l~a-~~~~~~~ir 92 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAG-HLHSMILWGPPGTGKTTLAEVIARYAN---ADVE---RISA-VTSGVKEIR 92 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHT-CCCEEEEECSTTSSHHHHHHHHHHHTT---CEEE---EEET-TTCCHHHHH
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcC-CCcEEEEECCCCCcHHHHHHHHHHHhC---CCeE---EEEe-ccCCHHHHH
Confidence 344556789999999 7888888887 568899999999999999999999873 2221 1111 122232222
Q ss_pred HHH---HH-HhcCCceEEEEecCCCCC--CcccccCC-CCCCceEE-EeCCChHH---HhhcCCCceEEecCCCCcc---
Q 039134 108 EEI---FQ-RLSQRRFALLLDDLRGPI--NLDEAGVP-DQNGSKIV-FTTIMEDA---CNTMGDQIKFKVDYLRRDD--- 173 (339)
Q Consensus 108 ~~l---~~-~l~~k~~LlvlDdv~~~~--~l~~l~~~-~~~~~~il-vTsR~~~~---~~~~~~~~~~~l~~L~~~~--- 173 (339)
..+ .. ...+++.+|+||+++... +.+.+... ......+| .||.+... ........++.+.+++.++
T Consensus 93 ~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~ 172 (447)
T 3pvs_A 93 EAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQ 172 (447)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHH
T ss_pred HHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHH
Confidence 222 11 124678999999997653 23333111 22223333 35555421 1112334578899999887
Q ss_pred ------Cc-c-----CCChhHHHHHHHHHHHcCCChHHHHHHHH
Q 039134 174 ------DV-L-----NFHPDILELAETVADLCRGLPLAHITIGR 205 (339)
Q Consensus 174 ------~~-~-----~~~~~~~~~~~~i~~~~~G~Plal~~~~~ 205 (339)
.. . ....-..+..+.+++.++|.+..+..+..
T Consensus 173 il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 173 VLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp HHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11 0 11123466778888899998876554433
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=2.9e-08 Score=91.11 Aligned_cols=169 Identities=12% Similarity=0.114 Sum_probs=97.7
Q ss_pred CccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcc-cCCcceEEEEEecCCCCHHHHHHHHH
Q 039134 33 DTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDT-RHNFYLVILVKAVDNKNQQGRAEEIF 111 (339)
Q Consensus 33 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~l~ 111 (339)
.....++|++..++.+..++..+ ..+.++|+|++|+|||++|+.+++..... ...+ .++.+..............+.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 111 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSA-NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVREKVK 111 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCT-TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTTHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcC-CCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHHHHH
Confidence 34456799999999999999876 33449999999999999999999886211 0111 122333222223332222222
Q ss_pred HHh----------------cCCceEEEEecCCCCCC--ccccc---CCCCCCceEEEeCCChH-HHhh-cCCCceEEecC
Q 039134 112 QRL----------------SQRRFALLLDDLRGPIN--LDEAG---VPDQNGSKIVFTTIMED-ACNT-MGDQIKFKVDY 168 (339)
Q Consensus 112 ~~l----------------~~k~~LlvlDdv~~~~~--l~~l~---~~~~~~~~ilvTsR~~~-~~~~-~~~~~~~~l~~ 168 (339)
... .+++.++++|+++.... ...+. ........+|+++.... .... ......+.+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~ 191 (353)
T 1sxj_D 112 NFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKA 191 (353)
T ss_dssp HHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCC
T ss_pred HHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCC
Confidence 221 13456999999865532 22221 11233455666554432 1111 11124688888
Q ss_pred CCCcc------Cc--cCCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 169 LRRDD------DV--LNFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 169 L~~~~------~~--~~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
++.++ .. .....-..+..+.+++.++|.|..+..+
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 192 LDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 88877 10 1112234567888999999999865443
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.66 E-value=3.1e-08 Score=85.56 Aligned_cols=161 Identities=7% Similarity=0.047 Sum_probs=90.9
Q ss_pred ccccch---hHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHH
Q 039134 36 SVKKGM---ESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQ 112 (339)
Q Consensus 36 ~~~vGR---~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 112 (339)
..++|+ +..++.+..++..+ ..+.++|+|++|+|||+||+.+++... .....+.|+........ .....+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~ 100 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI---STALLE 100 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS---CGGGGT
T ss_pred hhccCCCCCHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH---HHHHHH
Confidence 346763 36667777766654 568899999999999999999999874 12234566655421110 000111
Q ss_pred HhcCCceEEEEecCCCCCC----ccccc---CC-CCCC-ceEEEeCCChH---------HHhhcCCCceEEecCCCCcc-
Q 039134 113 RLSQRRFALLLDDLRGPIN----LDEAG---VP-DQNG-SKIVFTTIMED---------ACNTMGDQIKFKVDYLRRDD- 173 (339)
Q Consensus 113 ~l~~k~~LlvlDdv~~~~~----l~~l~---~~-~~~~-~~ilvTsR~~~---------~~~~~~~~~~~~l~~L~~~~- 173 (339)
.+ .++.+||+||++.... ...+. .. ...+ ..+|+||+... +...+.....+.+.+++.++
T Consensus 101 ~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~ 179 (242)
T 3bos_A 101 GL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEK 179 (242)
T ss_dssp TG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGH
T ss_pred hc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHH
Confidence 11 3567999999965432 11121 00 1222 23666665321 11111112678899999887
Q ss_pred ----Cc---cCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 039134 174 ----DV---LNFHPDILELAETVADLCRGLPLAHITIG 204 (339)
Q Consensus 174 ----~~---~~~~~~~~~~~~~i~~~~~G~Plal~~~~ 204 (339)
.. .....-..+..+.+++.++|++..+..+.
T Consensus 180 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 180 LAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 10 01112335667778888888887665543
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.64 E-value=7.7e-08 Score=85.77 Aligned_cols=88 Identities=24% Similarity=0.325 Sum_probs=58.3
Q ss_pred cccccchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC--C
Q 039134 35 LSVKKGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD--N 100 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~ 100 (339)
...++|.+..+++|.+.+... .....++|+|++|+|||+||+.+++... .. .+.+.... .
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~---~~---~~~v~~~~~~~ 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN---AT---FIRVVGSELVK 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT---CE---EEEEEGGGGCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC---CC---EEEEehHHHHH
Confidence 345799999999999887531 2457799999999999999999998873 22 22233221 1
Q ss_pred CC---HHHHHHHHHHH-hcCCceEEEEecCCC
Q 039134 101 KN---QQGRAEEIFQR-LSQRRFALLLDDLRG 128 (339)
Q Consensus 101 ~~---~~~~~~~l~~~-l~~k~~LlvlDdv~~ 128 (339)
.. .......+... ...++.+|+||+++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 121 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDA 121 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHH
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHH
Confidence 11 12222333332 345678999999954
No 25
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=5.5e-08 Score=94.38 Aligned_cols=166 Identities=11% Similarity=0.118 Sum_probs=93.7
Q ss_pred ccccccchhHHHHHHHHHhhcC----------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEe
Q 039134 34 TLSVKKGMESILDEVWECFEDD----------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKA 97 (339)
Q Consensus 34 ~~~~~vGR~~~~~~l~~~l~~~----------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 97 (339)
+...++|++..++++.+++... +..+.++|+|++|+|||++|+.+++.. .+. ++.+..
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~~-~i~in~ 110 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GYD-ILEQNA 110 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TCE-EEEECT
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEeC
Confidence 3456899999999999999751 134789999999999999999999887 222 333333
Q ss_pred cCCCCHHHHHHHHHHH------------------hcCCceEEEEecCCCCCC-----cccccCC-CCCCceEEEeCCChH
Q 039134 98 VDNKNQQGRAEEIFQR------------------LSQRRFALLLDDLRGPIN-----LDEAGVP-DQNGSKIVFTTIMED 153 (339)
Q Consensus 98 ~~~~~~~~~~~~l~~~------------------l~~k~~LlvlDdv~~~~~-----l~~l~~~-~~~~~~ilvTsR~~~ 153 (339)
+...........+... ..+++.+|++|+++.... +..+... ...+..+|+++....
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~ 190 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERN 190 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTT
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3222222111111110 125678999999965532 1222111 122333444433221
Q ss_pred ---HHhhcCCCceEEecCCCCcc--C---c---cCCChhHHHHHHHHHHHcCCCh-HHHHHHHH
Q 039134 154 ---ACNTMGDQIKFKVDYLRRDD--D---V---LNFHPDILELAETVADLCRGLP-LAHITIGR 205 (339)
Q Consensus 154 ---~~~~~~~~~~~~l~~L~~~~--~---~---~~~~~~~~~~~~~i~~~~~G~P-lal~~~~~ 205 (339)
+.........+.+.+++.++ . . .....-..+....|++.++|.+ .++..+..
T Consensus 191 ~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 191 LPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp SSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred CccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 11222234568888888777 0 0 0011122345678889999955 44555433
No 26
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.62 E-value=4.4e-08 Score=80.99 Aligned_cols=94 Identities=15% Similarity=0.238 Sum_probs=60.7
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccC----CcceEEEEEecC----CCCHHH-
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH----NFYLVILVKAVD----NKNQQG- 105 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~----~~~~~~- 105 (339)
...++||+.+++.+.+.+... ..+.++|+|++|+|||+||+.+++....... .-..++++.... ......
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~-~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR-TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDF 99 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS-SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC-CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHH
Confidence 456899999999999999875 5677899999999999999999988732110 012334443221 111111
Q ss_pred --HHHHHHHHh--cCCceEEEEecCCCC
Q 039134 106 --RAEEIFQRL--SQRRFALLLDDLRGP 129 (339)
Q Consensus 106 --~~~~l~~~l--~~k~~LlvlDdv~~~ 129 (339)
....+...+ .+++.+|++||++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~vl~iDe~~~l 127 (187)
T 2p65_A 100 EERLKSILKEVQDAEGQVVMFIDEIHTV 127 (187)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEETTGGGG
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCHHHh
Confidence 222222222 236789999999654
No 27
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.62 E-value=1.2e-07 Score=86.22 Aligned_cols=163 Identities=11% Similarity=-0.062 Sum_probs=99.0
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHH
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIF 111 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 111 (339)
+.+-..++|++..++.+.+++..+.....+++.|++|+|||++|+.+++... ..++.++.+. ...+.....+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~-~~~~~i~~~~~ 94 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSD-CKIDFVRGPLT 94 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTT-CCHHHHHTHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEcccc-cCHHHHHHHHH
Confidence 3445678999999999999999874557888899999999999999998872 1234444332 22444444444
Q ss_pred HHhc-----CCceEEEEecCCCCC-C--cccccCC---CCCCceEEEeCCChHHH-h-hcCCCceEEecCCCCcc-----
Q 039134 112 QRLS-----QRRFALLLDDLRGPI-N--LDEAGVP---DQNGSKIVFTTIMEDAC-N-TMGDQIKFKVDYLRRDD----- 173 (339)
Q Consensus 112 ~~l~-----~k~~LlvlDdv~~~~-~--l~~l~~~---~~~~~~ilvTsR~~~~~-~-~~~~~~~~~l~~L~~~~----- 173 (339)
+... +++.++++|+++... . ...+... ...++.+|+||...... . .......+.+.+++.++
T Consensus 95 ~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 174 (324)
T 3u61_B 95 NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMM 174 (324)
T ss_dssp HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHH
T ss_pred HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHH
Confidence 4332 367899999998765 2 2222110 23456677776654311 0 00112468888888654
Q ss_pred -------C---ccCCChhHH-HHHHHHHHHcCCChHHHH
Q 039134 174 -------D---VLNFHPDIL-ELAETVADLCRGLPLAHI 201 (339)
Q Consensus 174 -------~---~~~~~~~~~-~~~~~i~~~~~G~Plal~ 201 (339)
. ......-.. +....+++.++|.+..+.
T Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 175 KQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHH
Confidence 0 000111112 667778888888765433
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.59 E-value=7.3e-07 Score=78.19 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=54.2
Q ss_pred ccccchhHHHHHHHHHhhc---C--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCC---
Q 039134 36 SVKKGMESILDEVWECFED---D--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNK--- 101 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~---~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--- 101 (339)
..++|.+..++.|.+.+.. . ...+.++|+|++|+|||++|+.+++... .. .+.+......
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~---~~---~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ---VP---FLAMAGAEFVEVI 79 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT---CC---EEEEETTTTSSSS
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CC---EEEechHHHHhhc
Confidence 3579999988888776532 1 2346789999999999999999999873 22 2333333111
Q ss_pred --CHHHHHHHHHH-HhcCCceEEEEecCCCC
Q 039134 102 --NQQGRAEEIFQ-RLSQRRFALLLDDLRGP 129 (339)
Q Consensus 102 --~~~~~~~~l~~-~l~~k~~LlvlDdv~~~ 129 (339)
........+.. .....+.+|+||+++..
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAV 110 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC---
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchh
Confidence 01112222222 23456899999999754
No 29
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=5.2e-07 Score=82.90 Aligned_cols=173 Identities=9% Similarity=0.040 Sum_probs=94.6
Q ss_pred cCccccccchhHHHHHHHHHh-hcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccC---Ccc-----------------
Q 039134 32 VDTLSVKKGMESILDEVWECF-EDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH---NFY----------------- 90 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~f~----------------- 90 (339)
+.+-..++|++..++.+..++ ..+ ..+.++|+|++|+||||+++.++........ .++
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~-~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPR-DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTT-CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCC-CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 334456899999999999998 555 3333999999999999999999885421110 000
Q ss_pred ---eEEEEEecC--CCCHHHHHHHHHHHh--------------cCCceEEEEecCCCCCC--cccc---cCCCCCCceEE
Q 039134 91 ---LVILVKAVD--NKNQQGRAEEIFQRL--------------SQRRFALLLDDLRGPIN--LDEA---GVPDQNGSKIV 146 (339)
Q Consensus 91 ---~~~wv~~~~--~~~~~~~~~~l~~~l--------------~~k~~LlvlDdv~~~~~--l~~l---~~~~~~~~~il 146 (339)
..+.+.... ........+.+.... .+++-++|+|+++..+. ...+ ......++.+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEE
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEE
Confidence 011111111 011101222222221 22566999999977532 1112 11123356666
Q ss_pred EeCCCh-HHH-hhcCCCceEEecCCCCcc-----Cc---cCCChhH-HHHHHHHHHHcCCChHHHHHHHH
Q 039134 147 FTTIME-DAC-NTMGDQIKFKVDYLRRDD-----DV---LNFHPDI-LELAETVADLCRGLPLAHITIGR 205 (339)
Q Consensus 147 vTsR~~-~~~-~~~~~~~~~~l~~L~~~~-----~~---~~~~~~~-~~~~~~i~~~~~G~Plal~~~~~ 205 (339)
++|... .+. ........+++.+++.++ .. .....-. .+.+..+++.++|.+..+..+..
T Consensus 169 l~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 169 MVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred EEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 666543 221 111233678899998877 10 0111122 45677888999998876654443
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.44 E-value=1.9e-06 Score=78.35 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=91.3
Q ss_pred ccccchhHHHHHHHHHhhc-----------CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC--C--
Q 039134 36 SVKKGMESILDEVWECFED-----------DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD--N-- 100 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~-- 100 (339)
..++|.+..+++|.+.+.- ....+.++|+|++|+|||+||+.+++... .. .+.+.... .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~---~~---~~~v~~~~l~~~~ 91 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN---ST---FFSVSSSDLVSKW 91 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT---CE---EEEEEHHHHHTTT
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC---CC---EEEEchHHHhhcc
Confidence 4579999999999988831 12356799999999999999999999873 22 23333321 1
Q ss_pred -CCHHHHHHHHHHHh-cCCceEEEEecCCCCCC-------------cccc-----cC-CCCCCceEEEeCCChHHHh---
Q 039134 101 -KNQQGRAEEIFQRL-SQRRFALLLDDLRGPIN-------------LDEA-----GV-PDQNGSKIVFTTIMEDACN--- 156 (339)
Q Consensus 101 -~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~~~-------------l~~l-----~~-~~~~~~~ilvTsR~~~~~~--- 156 (339)
.........+.... ..++.+|+||+++.... ...+ .. ....+..+|.||.......
T Consensus 92 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al 171 (322)
T 3eie_A 92 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 171 (322)
T ss_dssp GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHH
Confidence 11223333333333 35678999999974421 1111 01 1233455665666543210
Q ss_pred hcCCCceEEecCCCCcc------CccC--CChhHHHHHHHHHHHcCC-ChHHHHHHHH
Q 039134 157 TMGDQIKFKVDYLRRDD------DVLN--FHPDILELAETVADLCRG-LPLAHITIGR 205 (339)
Q Consensus 157 ~~~~~~~~~l~~L~~~~------~~~~--~~~~~~~~~~~i~~~~~G-~Plal~~~~~ 205 (339)
.......+.+...+.++ .... ...........+++.+.| .+-.|..+..
T Consensus 172 ~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 172 RRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp HHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred HcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 00223456666666555 1011 111124456677788877 4555555443
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.43 E-value=3.1e-06 Score=75.70 Aligned_cols=161 Identities=15% Similarity=0.159 Sum_probs=91.0
Q ss_pred ccccchhHHHHHHHHHhhcC-----------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC-----
Q 039134 36 SVKKGMESILDEVWECFEDD-----------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD----- 99 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~----- 99 (339)
..++|.+..++.+.+.+... .....++|+|++|+|||++|+.++.... .. .+.+....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~---~~---~~~i~~~~l~~~~ 94 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS---AT---FLNISAASLTSKY 94 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT---CE---EEEEESTTTSSSS
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC---CC---eEEeeHHHHhhcc
Confidence 45799999999999887431 1357899999999999999999998862 21 23333331
Q ss_pred CCCHHHHHHHHHHHh-cCCceEEEEecCCCCCC-------------cccc-----cCC---CCCCceEEEeCCChHH---
Q 039134 100 NKNQQGRAEEIFQRL-SQRRFALLLDDLRGPIN-------------LDEA-----GVP---DQNGSKIVFTTIMEDA--- 154 (339)
Q Consensus 100 ~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~~~-------------l~~l-----~~~---~~~~~~ilvTsR~~~~--- 154 (339)
..........+.... ..++.+|++|+++.... ...+ ..+ .+.+..+|.||.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~ 174 (297)
T 3b9p_A 95 VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDE 174 (297)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCH
T ss_pred cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCH
Confidence 112233333333333 45788999999965411 0011 111 1234556666665421
Q ss_pred --HhhcCCCceEEecCCCCcc---------CccCCChhHHHHHHHHHHHcCCChH-HHHHHHH
Q 039134 155 --CNTMGDQIKFKVDYLRRDD---------DVLNFHPDILELAETVADLCRGLPL-AHITIGR 205 (339)
Q Consensus 155 --~~~~~~~~~~~l~~L~~~~---------~~~~~~~~~~~~~~~i~~~~~G~Pl-al~~~~~ 205 (339)
... ....+.+...+.++ ... ...-.......+++.+.|.+- .+..+..
T Consensus 175 ~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~-~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 175 AALRR--FTKRVYVSLPDEQTRELLLNRLLQKQ-GSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp HHHHH--CCEEEECCCCCHHHHHHHHHHHHGGG-SCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 222 22445565555444 111 111224556778888888775 5555443
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.42 E-value=1.9e-06 Score=79.49 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=91.7
Q ss_pred ccccchhHHHHHHHHHhhc-----------CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC--C-
Q 039134 36 SVKKGMESILDEVWECFED-----------DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN--K- 101 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~- 101 (339)
..++|.+..+++|.+.+.. ....+.++|+|++|+|||+||+.+++... . ..+.+..... .
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~---~---~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG---A---TFFSISASSLTSKW 157 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT---C---EEEEEEGGGGCCSS
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC---C---eEEEEehHHhhccc
Confidence 4579999999999988752 12467899999999999999999998862 2 2334443311 1
Q ss_pred --CHHHHHHHHHHHh-cCCceEEEEecCCCCCC-------------cccc-----cCC--CCCCceEEEeCCChHHH-h-
Q 039134 102 --NQQGRAEEIFQRL-SQRRFALLLDDLRGPIN-------------LDEA-----GVP--DQNGSKIVFTTIMEDAC-N- 156 (339)
Q Consensus 102 --~~~~~~~~l~~~l-~~k~~LlvlDdv~~~~~-------------l~~l-----~~~--~~~~~~ilvTsR~~~~~-~- 156 (339)
........+.... ..++.+|+||+++.... +..+ ... ...+..+|.||...... .
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 237 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEA 237 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHH
Confidence 1122233333333 35789999999853210 1111 011 12345555566543211 0
Q ss_pred -hcCCCceEEecCCCCcc-----Cc-c--CCChhHHHHHHHHHHHcCC-ChHHHHHHHHH
Q 039134 157 -TMGDQIKFKVDYLRRDD-----DV-L--NFHPDILELAETVADLCRG-LPLAHITIGRA 206 (339)
Q Consensus 157 -~~~~~~~~~l~~L~~~~-----~~-~--~~~~~~~~~~~~i~~~~~G-~Plal~~~~~~ 206 (339)
.......+.+...+.++ .. . ....-.......+++.+.| .+..|..++..
T Consensus 238 l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 238 ARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 11223456666666555 00 0 1111224566778888887 55566665543
No 33
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=1.2e-06 Score=80.21 Aligned_cols=167 Identities=16% Similarity=0.225 Sum_probs=96.5
Q ss_pred cCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcc-eEEEEEecCCCCHHHHHHHH
Q 039134 32 VDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFY-LVILVKAVDNKNQQGRAEEI 110 (339)
Q Consensus 32 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l 110 (339)
+.+-..++|.+..++.|...+..+ +.+.++++|++|+||||+|+.++.... ...+. .+..+........+...+.+
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g-~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir~~i 97 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEG-KLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVRNQI 97 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT-CCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHHTHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHHHHH
Confidence 344456799999999999999887 444499999999999999999999863 12222 12222222222333333333
Q ss_pred HHHh------cCCceEEEEecCCCCCC--ccccc---CCCCCCceEEEeCCChH-HH-hhcCCCceEEecCCCCcc----
Q 039134 111 FQRL------SQRRFALLLDDLRGPIN--LDEAG---VPDQNGSKIVFTTIMED-AC-NTMGDQIKFKVDYLRRDD---- 173 (339)
Q Consensus 111 ~~~l------~~k~~LlvlDdv~~~~~--l~~l~---~~~~~~~~ilvTsR~~~-~~-~~~~~~~~~~l~~L~~~~---- 173 (339)
.... .+.+-++|+|+++.... .+.+. ......+.+++++.... +. ........+.+.+++.++
T Consensus 98 ~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~ 177 (340)
T 1sxj_C 98 KDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERR 177 (340)
T ss_dssp HHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHH
T ss_pred HHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHH
Confidence 3322 13467899999965532 22221 11233455665554432 11 111223467888888776
Q ss_pred --Ccc--CCChhHHHHHHHHHHHcCCChHHHH
Q 039134 174 --DVL--NFHPDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 174 --~~~--~~~~~~~~~~~~i~~~~~G~Plal~ 201 (339)
... ....-..+..+.+++.++|.+.-+.
T Consensus 178 l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 178 IANVLVHEKLKLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 100 1112234567778888999887443
No 34
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.39 E-value=5.9e-06 Score=75.07 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=92.3
Q ss_pred ccccchhHHHHHHHHHhhc-----------CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC----
Q 039134 36 SVKKGMESILDEVWECFED-----------DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN---- 100 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~---- 100 (339)
..++|.+..++.|.+.+.- ....+.++|+|++|+|||+||+.+++... .. ..+.+.....
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~~i~~~~l~~~~ 86 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS---TFFSISSSDLVSKW 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SC---EEEEEECCSSCCSS
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CC---cEEEEEhHHHHhhh
Confidence 3579999999988887632 12347899999999999999999998861 11 2233333311
Q ss_pred -CCHHHHHHHHHHHh-cCCceEEEEecCCCCCC-------------cccc-----cCC-CCCCceEEEeCCChHHH---h
Q 039134 101 -KNQQGRAEEIFQRL-SQRRFALLLDDLRGPIN-------------LDEA-----GVP-DQNGSKIVFTTIMEDAC---N 156 (339)
Q Consensus 101 -~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~~~-------------l~~l-----~~~-~~~~~~ilvTsR~~~~~---~ 156 (339)
...+.....+.... ..++.+|+||+++.... ...+ ... ...+..+|.||...... -
T Consensus 87 ~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al 166 (322)
T 1xwi_A 87 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 166 (322)
T ss_dssp CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHH
Confidence 11233344444433 46789999999975411 0111 010 12344555556543221 0
Q ss_pred hcCCCceEEecCCCCcc------CccCC-C-hhHHHHHHHHHHHcCCC-hHHHHHHHH
Q 039134 157 TMGDQIKFKVDYLRRDD------DVLNF-H-PDILELAETVADLCRGL-PLAHITIGR 205 (339)
Q Consensus 157 ~~~~~~~~~l~~L~~~~------~~~~~-~-~~~~~~~~~i~~~~~G~-Plal~~~~~ 205 (339)
.......+.+...+.++ ..... . .........+++.+.|. +-.|..+++
T Consensus 167 ~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 167 RRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 01233556677666655 11111 1 11345667788888886 545655544
No 35
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.38 E-value=3e-07 Score=87.32 Aligned_cols=163 Identities=17% Similarity=0.132 Sum_probs=89.2
Q ss_pred cc-chhHH--HHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHH------
Q 039134 38 KK-GMESI--LDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAE------ 108 (339)
Q Consensus 38 ~v-GR~~~--~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~------ 108 (339)
|| |.... ...+............++|+|++|+||||||+.+++......... .+++++.... ......
T Consensus 107 fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~-~v~~v~~~~~--~~~~~~~~~~~~ 183 (440)
T 2z4s_A 107 FVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-RVMYITSEKF--LNDLVDSMKEGK 183 (440)
T ss_dssp CCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSS-CEEEEEHHHH--HHHHHHHHHTTC
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC-eEEEeeHHHH--HHHHHHHHHccc
Confidence 44 65443 344444444442267899999999999999999998873111122 3455543311 111111
Q ss_pred --HHHHHhcCCceEEEEecCCCCCC----ccccc---CC-CCCCceEEEeCCChH---------HHhhcCCCceEEecCC
Q 039134 109 --EIFQRLSQRRFALLLDDLRGPIN----LDEAG---VP-DQNGSKIVFTTIMED---------ACNTMGDQIKFKVDYL 169 (339)
Q Consensus 109 --~l~~~l~~k~~LlvlDdv~~~~~----l~~l~---~~-~~~~~~ilvTsR~~~---------~~~~~~~~~~~~l~~L 169 (339)
.+...+..++.+|++||++.... .+.+. .. ...+..||+||.... +...+.....+.+.++
T Consensus 184 ~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 184 LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 22223333678999999965432 11121 11 345677888777531 1222323356788888
Q ss_pred CCcc------Ccc--CCChhHHHHHHHHHHHcCCChHHHHHH
Q 039134 170 RRDD------DVL--NFHPDILELAETVADLCRGLPLAHITI 203 (339)
Q Consensus 170 ~~~~------~~~--~~~~~~~~~~~~i~~~~~G~Plal~~~ 203 (339)
+.++ ... ....-..+....|++.+.|++..+.-+
T Consensus 264 ~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 264 DEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 8777 000 001112345667888889988765544
No 36
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.5e-06 Score=78.49 Aligned_cols=93 Identities=10% Similarity=0.119 Sum_probs=63.3
Q ss_pred cccchhHHHHHHHHHhhc---CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccC-----CcceEEEEEecCCCC------
Q 039134 37 VKKGMESILDEVWECFED---DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH-----NFYLVILVKAVDNKN------ 102 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-----~f~~~~wv~~~~~~~------ 102 (339)
.+.||++++++|...|.. +...+.+.|+|++|+|||++++.+++.+..... .| ..+++......+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHH
Confidence 479999999999988865 347789999999999999999999998842211 12 244554332111
Q ss_pred ---------------HHHHHHHHHHHh---cCCceEEEEecCCCCC
Q 039134 103 ---------------QQGRAEEIFQRL---SQRRFALLLDDLRGPI 130 (339)
Q Consensus 103 ---------------~~~~~~~l~~~l---~~k~~LlvlDdv~~~~ 130 (339)
....+..+...+ .+++++++||+++...
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 122333334433 4567999999997664
No 37
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.37 E-value=3.2e-06 Score=77.92 Aligned_cols=164 Identities=14% Similarity=0.095 Sum_probs=91.2
Q ss_pred ccccchhHHHHHHHHHhhc-----------CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---C--
Q 039134 36 SVKKGMESILDEVWECFED-----------DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---D-- 99 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---~-- 99 (339)
..++|.+..++.|.+.+.. ....+.++|+|++|+|||+||+.+++... .. .+.+... .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~---~~---~~~v~~~~l~~~~ 124 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN---ST---FFSVSSSDLVSKW 124 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT---CE---EEEEEHHHHHSCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CC---EEEeeHHHHhhhh
Confidence 3579999999999988731 12345689999999999999999999873 22 2223322 0
Q ss_pred CCCHHHHHHHHHHHh-cCCceEEEEecCCCCCC-------------ccccc-----CC-CCCCceEEEeCCChHHH---h
Q 039134 100 NKNQQGRAEEIFQRL-SQRRFALLLDDLRGPIN-------------LDEAG-----VP-DQNGSKIVFTTIMEDAC---N 156 (339)
Q Consensus 100 ~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~~~-------------l~~l~-----~~-~~~~~~ilvTsR~~~~~---~ 156 (339)
..........+.... ..++.+|+||+++.... ...+. .. ...+..+|.||...... -
T Consensus 125 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al 204 (355)
T 2qp9_X 125 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 204 (355)
T ss_dssp ---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHH
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHH
Confidence 011122333333333 45789999999975421 11110 10 13345566566554221 0
Q ss_pred hcCCCceEEecCCCCcc-----C-ccCCC--hhHHHHHHHHHHHcCC-ChHHHHHHHH
Q 039134 157 TMGDQIKFKVDYLRRDD-----D-VLNFH--PDILELAETVADLCRG-LPLAHITIGR 205 (339)
Q Consensus 157 ~~~~~~~~~l~~L~~~~-----~-~~~~~--~~~~~~~~~i~~~~~G-~Plal~~~~~ 205 (339)
.......+.+...+.++ . ..... .........|++.+.| .+..|..++.
T Consensus 205 ~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 205 RRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp HHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 11233556677766665 1 11111 1124556778888888 4555555543
No 38
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.36 E-value=5.1e-06 Score=77.50 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=89.3
Q ss_pred ccccchhHHHHHHHHHhhcC-----------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC----
Q 039134 36 SVKKGMESILDEVWECFEDD-----------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN---- 100 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~---- 100 (339)
..++|++..++.|.+.+... ...+.++|+|++|+|||+||+.+++... .. .+.+.....
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~---~~---~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN---AT---FFNISAASLTSKY 188 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT---CE---EEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc---Cc---EEEeeHHHhhccc
Confidence 45799999999999988321 1347899999999999999999988862 21 223322211
Q ss_pred -CCHHHHHHHHHHHh-cCCceEEEEecCCCCC--------C-----cccccC-----C--CCCCceEEEeCCChHHH--h
Q 039134 101 -KNQQGRAEEIFQRL-SQRRFALLLDDLRGPI--------N-----LDEAGV-----P--DQNGSKIVFTTIMEDAC--N 156 (339)
Q Consensus 101 -~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~~--------~-----l~~l~~-----~--~~~~~~ilvTsR~~~~~--~ 156 (339)
.........+.... ...+.+|+||+++... . ...+.. . ......||.||...... .
T Consensus 189 ~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 268 (389)
T 3vfd_A 189 VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEA 268 (389)
T ss_dssp ---CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHH
Confidence 01122333333333 3466899999996441 0 011100 0 12334555566543221 0
Q ss_pred -hcCCCceEEecCCCCcc-----C-cc--CCChhHHHHHHHHHHHcCCChH-HHHHHHH
Q 039134 157 -TMGDQIKFKVDYLRRDD-----D-VL--NFHPDILELAETVADLCRGLPL-AHITIGR 205 (339)
Q Consensus 157 -~~~~~~~~~l~~L~~~~-----~-~~--~~~~~~~~~~~~i~~~~~G~Pl-al~~~~~ 205 (339)
.......+.+...+.++ . .. ....-..+....+++.+.|..- .|..+..
T Consensus 269 l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 269 VLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp HHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 11222456676666655 1 00 1112234566778888887544 5555544
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.36 E-value=2.4e-06 Score=76.89 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=55.6
Q ss_pred cccchhHHHHHHHHHhhc--------------CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcc--eEEEEEecC-
Q 039134 37 VKKGMESILDEVWECFED--------------DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFY--LVILVKAVD- 99 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~--------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~- 99 (339)
.++|.+..++.|.+.+.. ......++|+|++|+|||++|+.+++... ...... ..+.+....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH-RLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH-HTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCcCCCcEEEEcHHHh
Confidence 579999999998877642 22456799999999999999999988873 211111 233333221
Q ss_pred -C---CCHHHHHHHHHHHhcCCceEEEEecCCCC
Q 039134 100 -N---KNQQGRAEEIFQRLSQRRFALLLDDLRGP 129 (339)
Q Consensus 100 -~---~~~~~~~~~l~~~l~~k~~LlvlDdv~~~ 129 (339)
. .........+.... ++.+|+||+++..
T Consensus 111 ~~~~~g~~~~~~~~~~~~~--~~~vl~iDEid~l 142 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA--MGGVLFIDEAYYL 142 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH--TTSEEEEETGGGS
T ss_pred hhhcccccHHHHHHHHHhc--CCCEEEEEChhhh
Confidence 0 11112222222222 4569999999744
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.35 E-value=2.2e-06 Score=79.07 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=37.9
Q ss_pred cccccchhHHHHH---HHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 35 LSVKKGMESILDE---VWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 35 ~~~~vGR~~~~~~---l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++|++..++. +...+..+ ...+.++|+|++|+|||++|+.+++..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999776 44555554 223689999999999999999999988
No 41
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.34 E-value=8.2e-07 Score=78.60 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=53.6
Q ss_pred ccccchhHHHHHHHHH-------hhc--CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC---CCCH
Q 039134 36 SVKKGMESILDEVWEC-------FED--DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD---NKNQ 103 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~-------l~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---~~~~ 103 (339)
..++|++..++++... +.. ......++|+|++|+|||+||+.+++... ..| +.+.... ....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~---~~~---~~i~~~~~~~g~~~ 106 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN---FPF---IKICSPDKMIGFSE 106 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT---CSE---EEEECGGGCTTCCH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC---CCE---EEEeCHHHhcCCch
Confidence 3578888877766663 321 23678999999999999999999999862 222 2222221 1122
Q ss_pred HHH---HHHHHH-HhcCCceEEEEecCCC
Q 039134 104 QGR---AEEIFQ-RLSQRRFALLLDDLRG 128 (339)
Q Consensus 104 ~~~---~~~l~~-~l~~k~~LlvlDdv~~ 128 (339)
... ...+.. ....++.+|+||+++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 107 TAKCQAMKKIFDDAYKSQLSCVVVDDIER 135 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSEEEEEECCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEChhh
Confidence 222 222222 2345789999999854
No 42
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.33 E-value=9e-07 Score=70.70 Aligned_cols=108 Identities=11% Similarity=0.080 Sum_probs=62.8
Q ss_pred cccchhHHHHHHHHHhhc-CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhc
Q 039134 37 VKKGMESILDEVWECFED-DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLS 115 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 115 (339)
.++|++..+.++.+.+.. ......|.|+|++|+|||++|+.+++...+....| + +......+.......+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~~~~~~~~~~--- 74 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNAPQLNDFIAL--- 74 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTSSCHHHHHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcchhhhcHHHH---
Confidence 478999999999988864 11345679999999999999999988753212222 2 444422211111111111
Q ss_pred CCceEEEEecCCCCCC--cccc---cCCCCCCceEEEeCCC
Q 039134 116 QRRFALLLDDLRGPIN--LDEA---GVPDQNGSKIVFTTIM 151 (339)
Q Consensus 116 ~k~~LlvlDdv~~~~~--l~~l---~~~~~~~~~ilvTsR~ 151 (339)
....+|++|+++.... ...+ ........++|.||..
T Consensus 75 a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 75 AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1346789999976642 1111 1113335566666654
No 43
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.28 E-value=6.4e-06 Score=75.22 Aligned_cols=157 Identities=7% Similarity=0.001 Sum_probs=93.3
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc-------------------CCcceEEEEEec---C
Q 039134 42 ESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR-------------------HNFYLVILVKAV---D 99 (339)
Q Consensus 42 ~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~~~---~ 99 (339)
+...+.+...+..+.-...++++|++|+|||++|+.+++...... .+++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 455677778887764557899999999999999999998763111 1133 3344322 2
Q ss_pred CCCHHHHHHHHHHHhc-----CCceEEEEecCCCCCC--cccc---cCCCCCCceEEEeCCChH-HH-hhcCCCceEEec
Q 039134 100 NKNQQGRAEEIFQRLS-----QRRFALLLDDLRGPIN--LDEA---GVPDQNGSKIVFTTIMED-AC-NTMGDQIKFKVD 167 (339)
Q Consensus 100 ~~~~~~~~~~l~~~l~-----~k~~LlvlDdv~~~~~--l~~l---~~~~~~~~~ilvTsR~~~-~~-~~~~~~~~~~l~ 167 (339)
....+.. ..+.+.+. +++-++|+|+++.... .+.+ ......++.+|++|.+.. +. ........+.+.
T Consensus 87 ~~~i~~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~ 165 (334)
T 1a5t_A 87 TLGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLA 165 (334)
T ss_dssp SBCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred CCCHHHH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCC
Confidence 2334433 34444442 4678999999976542 2222 111233455555555432 21 122334578899
Q ss_pred CCCCcc-----CccCCChhHHHHHHHHHHHcCCChHHHHH
Q 039134 168 YLRRDD-----DVLNFHPDILELAETVADLCRGLPLAHIT 202 (339)
Q Consensus 168 ~L~~~~-----~~~~~~~~~~~~~~~i~~~~~G~Plal~~ 202 (339)
++++++ .... ....+.+..+++.++|.|..+..
T Consensus 166 ~~~~~~~~~~L~~~~--~~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 166 PPPEQYAVTWLSREV--TMSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp CCCHHHHHHHHHHHC--CCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 998877 1111 22345667788999999975543
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.26 E-value=1.3e-06 Score=79.37 Aligned_cols=150 Identities=19% Similarity=0.088 Sum_probs=79.4
Q ss_pred HHHHHHHHhhcCC-CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHH--------HHHHHh
Q 039134 44 ILDEVWECFEDDF-PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAE--------EIFQRL 114 (339)
Q Consensus 44 ~~~~l~~~l~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~--------~l~~~l 114 (339)
....+...+..+. ....++|+|++|+||||||+.+++..... .+ .+++++.... ...... .+...+
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~-~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~ 96 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GY-RVIYSSADDF--AQAMVEHLKKGTINEFRNMY 96 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TC-CEEEEEHHHH--HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CC-EEEEEEHHHH--HHHHHHHHHcCcHHHHHHHh
Confidence 3444555555432 35789999999999999999999987311 22 3445543311 111111 111122
Q ss_pred cCCceEEEEecCCCCCC---c-cccc--C-C-CCCCceEEEeCCCh-H--------HHhhcCCCceEEecCCCCcc----
Q 039134 115 SQRRFALLLDDLRGPIN---L-DEAG--V-P-DQNGSKIVFTTIME-D--------ACNTMGDQIKFKVDYLRRDD---- 173 (339)
Q Consensus 115 ~~k~~LlvlDdv~~~~~---l-~~l~--~-~-~~~~~~ilvTsR~~-~--------~~~~~~~~~~~~l~~L~~~~---- 173 (339)
.++.+|++|+++.... . ..+. + . ...+..+|+|+... . +...+.....+.+.+ +.++
T Consensus 97 -~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 97 -KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKI 174 (324)
T ss_dssp -HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHH
T ss_pred -cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHH
Confidence 2467999999965432 1 1111 1 0 23455677766532 1 122222235688888 6666
Q ss_pred --C--ccCCChhHHHHHHHHHHHcCCChHHHH
Q 039134 174 --D--VLNFHPDILELAETVADLCRGLPLAHI 201 (339)
Q Consensus 174 --~--~~~~~~~~~~~~~~i~~~~~G~Plal~ 201 (339)
. ......-..+....+++.+ |+...+.
T Consensus 175 l~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~ 205 (324)
T 1l8q_A 175 IKEKLKEFNLELRKEVIDYLLENT-KNVREIE 205 (324)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHH
Confidence 0 0011122345667778888 7765433
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.24 E-value=1.7e-05 Score=75.22 Aligned_cols=164 Identities=16% Similarity=0.134 Sum_probs=88.9
Q ss_pred ccccchhHHHHHHHHHhhc-----------CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC-----
Q 039134 36 SVKKGMESILDEVWECFED-----------DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD----- 99 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~----- 99 (339)
..++|.+..++.|.+.+.. ....+.++|+|++|+|||+||+.+++... ... .+.+....
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~---~~~v~~~~l~~~~ 208 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NST---FFSISSSDLVSKW 208 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSE---EEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CCC---EEEEeHHHHHhhh
Confidence 3469999999999887731 12457899999999999999999998861 111 12222110
Q ss_pred -CCCHHHHHHHHHHHh-cCCceEEEEecCCCCCC-------------cccccCC------CCCCceEEEeCCChHHHh--
Q 039134 100 -NKNQQGRAEEIFQRL-SQRRFALLLDDLRGPIN-------------LDEAGVP------DQNGSKIVFTTIMEDACN-- 156 (339)
Q Consensus 100 -~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~~~-------------l~~l~~~------~~~~~~ilvTsR~~~~~~-- 156 (339)
... ......+.... ..++.+|+||+++.... ...+... ...+..||.||.......
T Consensus 209 ~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~a 287 (444)
T 2zan_A 209 LGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSA 287 (444)
T ss_dssp ---C-CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHH
T ss_pred cchH-HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHH
Confidence 011 11222333332 35789999999975511 1111111 134455666665543211
Q ss_pred -hcCCCceEEecCCCCcc------CccCC-C-hhHHHHHHHHHHHcCC-ChHHHHHHHH
Q 039134 157 -TMGDQIKFKVDYLRRDD------DVLNF-H-PDILELAETVADLCRG-LPLAHITIGR 205 (339)
Q Consensus 157 -~~~~~~~~~l~~L~~~~------~~~~~-~-~~~~~~~~~i~~~~~G-~Plal~~~~~ 205 (339)
.......+.+...+.++ ..... . .........|++.+.| .+-.|..++.
T Consensus 288 l~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 288 IRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp HHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 11223456665555554 11111 1 1124556778888888 4545555443
No 46
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.24 E-value=2.5e-06 Score=87.67 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=60.2
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhccc--CC--cceEEEEEecCC-------CCH
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTR--HN--FYLVILVKAVDN-------KNQ 103 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~--f~~~~wv~~~~~-------~~~ 103 (339)
...++||+.++.++.+.+... ..+.++|+|++|+|||++|+.+++...... .. -..++++..+.. ...
T Consensus 169 ld~viGr~~~i~~l~~~l~~~-~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~ 247 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF 247 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCS-SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CH
T ss_pred CcccCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHH
Confidence 345799999999999999876 456689999999999999999999873110 00 112334433211 122
Q ss_pred HHHHHHHHHHhc--CCceEEEEecCCCC
Q 039134 104 QGRAEEIFQRLS--QRRFALLLDDLRGP 129 (339)
Q Consensus 104 ~~~~~~l~~~l~--~k~~LlvlDdv~~~ 129 (339)
......+...+. +++.+|++|+++..
T Consensus 248 ~~~l~~~~~~~~~~~~~~iL~IDEi~~l 275 (854)
T 1qvr_A 248 EERLKAVIQEVVQSQGEVILFIDELHTV 275 (854)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecHHHH
Confidence 333444444443 36789999999754
No 47
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.20 E-value=3.4e-06 Score=70.96 Aligned_cols=106 Identities=19% Similarity=0.147 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhhcCC---CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC-------CCHHHHHHHHH
Q 039134 42 ESILDEVWECFEDDF---PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN-------KNQQGRAEEIF 111 (339)
Q Consensus 42 ~~~~~~l~~~l~~~~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-------~~~~~~~~~l~ 111 (339)
...++.+.+++.... ....+.|+|++|+|||+||+.+++... .....++|+....- ..... ...+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 110 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVPELFRELKHSLQDQT-MNEKL 110 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHHHHHHHHHHC---CC-CHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhHHHHHHHHHHhccch-HHHHH
Confidence 345566666666531 127899999999999999999999874 22334566654310 00000 01112
Q ss_pred HHhcCCceEEEEecCCCC--CCccc--ccC---C--CCCCceEEEeCCCh
Q 039134 112 QRLSQRRFALLLDDLRGP--INLDE--AGV---P--DQNGSKIVFTTIME 152 (339)
Q Consensus 112 ~~l~~k~~LlvlDdv~~~--~~l~~--l~~---~--~~~~~~ilvTsR~~ 152 (339)
..+.. .-+|||||++.. ..+.. +.. . ...+..+|+||...
T Consensus 111 ~~~~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 111 DYIKK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp HHHHH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHhcC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 22222 249999999542 33221 211 1 13456677777753
No 48
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=6e-06 Score=74.41 Aligned_cols=131 Identities=13% Similarity=0.026 Sum_probs=77.0
Q ss_pred chhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC-CCCHHHHHHHHHHHhc---
Q 039134 40 GMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD-NKNQQGRAEEIFQRLS--- 115 (339)
Q Consensus 40 GR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~l~~~l~--- 115 (339)
|-+..++.|...+..+ +.+.++++|++|+|||++|..+++....-........++.... ....++..+ +.+...
T Consensus 1 g~~~~~~~L~~~i~~~-~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~-li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRT-IKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTC-SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHH-HHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCC-CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHH-HHHHHhhcc
Confidence 4456678888888887 4889999999999999999999875311111122334444332 344444433 444443
Q ss_pred --CCceEEEEecCCCCCC--ccccc---CCCCCCceEEEeC-CChHHHhhcCCCceEEecCCCCcc
Q 039134 116 --QRRFALLLDDLRGPIN--LDEAG---VPDQNGSKIVFTT-IMEDACNTMGDQIKFKVDYLRRDD 173 (339)
Q Consensus 116 --~k~~LlvlDdv~~~~~--l~~l~---~~~~~~~~ilvTs-R~~~~~~~~~~~~~~~l~~L~~~~ 173 (339)
+++-++|+|+++.... .+.+. ......+.+|++| ....+....... .+++.++++++
T Consensus 79 ~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~ 143 (305)
T 2gno_A 79 ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKE 143 (305)
T ss_dssp SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHH
T ss_pred ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHH
Confidence 4567999999976542 22221 1123345555544 433333322233 89999998777
No 49
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.12 E-value=2.3e-06 Score=70.74 Aligned_cols=104 Identities=16% Similarity=0.070 Sum_probs=59.7
Q ss_pred chhHHHHHHHHHhhcC--CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHH------
Q 039134 40 GMESILDEVWECFEDD--FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIF------ 111 (339)
Q Consensus 40 GR~~~~~~l~~~l~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~------ 111 (339)
++...++.+.+++.+- .....++|+|++|+|||||++.++.... ....+. ++++... +....+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~~-~~~~~~~------~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-EKKGIR-GYFFDTK------DLIFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-HHSCCC-CCEEEHH------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH-HHcCCe-EEEEEHH------HHHHHHHHHhcCc
Confidence 3555666666666542 2457899999999999999999998872 112222 2333322 2222221
Q ss_pred ------HHhcCCceEEEEecCCC--CCCcc-----cccCC-CCCCceEEEeCCCh
Q 039134 112 ------QRLSQRRFALLLDDLRG--PINLD-----EAGVP-DQNGSKIVFTTIME 152 (339)
Q Consensus 112 ------~~l~~k~~LlvlDdv~~--~~~l~-----~l~~~-~~~~~~ilvTsR~~ 152 (339)
..+. ++-+||||+++. .+.+. .+... ...+..+|+||...
T Consensus 90 ~~~~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 90 KDTKFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CCSHHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred hHHHHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1121 567999999973 23222 11111 23567788888653
No 50
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.11 E-value=5.1e-06 Score=79.77 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=56.6
Q ss_pred cccchhHHHHHHHHHhhc------------CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---CC-
Q 039134 37 VKKGMESILDEVWECFED------------DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---DN- 100 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---~~- 100 (339)
.++|.+..+++|.+.+.. -.....++|+|++|+|||++|+.+++... . ..+.+... ..
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~---~---~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---A---FFFLINGPEIMSKL 278 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS---S---EEEEEEHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC---C---CEEEEEchHhhhhh
Confidence 479999999999888753 13456799999999999999999988762 2 22334333 11
Q ss_pred --CCHHHHHHHHHHHhcCCceEEEEecCC
Q 039134 101 --KNQQGRAEEIFQRLSQRRFALLLDDLR 127 (339)
Q Consensus 101 --~~~~~~~~~l~~~l~~k~~LlvlDdv~ 127 (339)
.........+.....+++.+|+||+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId 307 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELD 307 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchh
Confidence 111112222233335678899999984
No 51
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.09 E-value=1.4e-05 Score=76.41 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=41.3
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++||+.+++++.+.+... ...-++|+|++|+|||++|+.+++..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~-~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhcc-CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999875 45667899999999999999999986
No 52
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.08 E-value=1.4e-06 Score=76.81 Aligned_cols=47 Identities=26% Similarity=0.182 Sum_probs=37.4
Q ss_pred ccccchhHHHHHHHHHhhc-----------CCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFED-----------DFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++|.+..++.+.+.+.. ....+.++|+|++|+|||+||+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4579999988888876651 1123458899999999999999999987
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.06 E-value=3.1e-05 Score=70.63 Aligned_cols=165 Identities=21% Similarity=0.156 Sum_probs=89.8
Q ss_pred CccccccchhHHHHHHHHHhhc----CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHH
Q 039134 33 DTLSVKKGMESILDEVWECFED----DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAE 108 (339)
Q Consensus 33 ~~~~~~vGR~~~~~~l~~~l~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 108 (339)
.+...++|.+..++.+...+.. +.....++|+|++|+||||||+.++.... ..|. ...........+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~---~~~~---~~sg~~~~~~~~l~- 94 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ---TNIH---VTSGPVLVKQGDMA- 94 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT---CCEE---EEETTTCCSHHHHH-
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC---CCEE---EEechHhcCHHHHH-
Confidence 3455679999888888777754 22447799999999999999999999873 2221 11111111222222
Q ss_pred HHHHHhcCCceEEEEecCCCCCC--cccccC---CC--------C----------CCceEE-EeCCChHHHhhc--CCCc
Q 039134 109 EIFQRLSQRRFALLLDDLRGPIN--LDEAGV---PD--------Q----------NGSKIV-FTTIMEDACNTM--GDQI 162 (339)
Q Consensus 109 ~l~~~l~~k~~LlvlDdv~~~~~--l~~l~~---~~--------~----------~~~~il-vTsR~~~~~~~~--~~~~ 162 (339)
.+...+ .++.++++|+++.... .+.+.. .. + ....++ .|++...+.... ....
T Consensus 95 ~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l 173 (334)
T 1in4_A 95 AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGI 173 (334)
T ss_dssp HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSE
T ss_pred HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCc
Confidence 222222 2456778898864421 111100 00 0 011222 344433221111 1223
Q ss_pred eEEecCCCCcc--------CccCCChhHHHHHHHHHHHcCCChHHHHHHHH
Q 039134 163 KFKVDYLRRDD--------DVLNFHPDILELAETVADLCRGLPLAHITIGR 205 (339)
Q Consensus 163 ~~~l~~L~~~~--------~~~~~~~~~~~~~~~i~~~~~G~Plal~~~~~ 205 (339)
...+++.+.++ ..........+.+..|++.+.|.|..+..+..
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 57788888777 11112233456788899999999976654443
No 54
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=1.8e-05 Score=74.56 Aligned_cols=87 Identities=23% Similarity=0.315 Sum_probs=58.4
Q ss_pred cccchhHHHHHHHHHhhc-----------C-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC--CCC
Q 039134 37 VKKGMESILDEVWECFED-----------D-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD--NKN 102 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-----------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~~~ 102 (339)
.+.|-+..+++|.+.+.- + ..++-|+++||+|+|||.||+.+++... .. .+.+..+. ...
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~---~~---~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG---AN---FIFSPASGIVDKY 255 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT---CE---EEEEEGGGTCCSS
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC---CC---EEEEehhhhcccc
Confidence 347889988888877642 1 4568999999999999999999999983 22 23344331 111
Q ss_pred H---HHHHHHHHHHh-cCCceEEEEecCCCC
Q 039134 103 Q---QGRAEEIFQRL-SQRRFALLLDDLRGP 129 (339)
Q Consensus 103 ~---~~~~~~l~~~l-~~k~~LlvlDdv~~~ 129 (339)
. ...+..++... ...+++|++|+++..
T Consensus 256 ~Gese~~ir~~F~~A~~~~P~IifiDEiDai 286 (437)
T 4b4t_L 256 IGESARIIREMFAYAKEHEPCIIFMDEVDAI 286 (437)
T ss_dssp SSHHHHHHHHHHHHHHHSCSEEEEEECCCSS
T ss_pred chHHHHHHHHHHHHHHhcCCceeeeeccccc
Confidence 1 22333333333 468999999999743
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.01 E-value=1.1e-05 Score=72.42 Aligned_cols=87 Identities=22% Similarity=0.306 Sum_probs=56.4
Q ss_pred ccccchhHHHHHHHHHhhc-----------C-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC----
Q 039134 36 SVKKGMESILDEVWECFED-----------D-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD---- 99 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~-----------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---- 99 (339)
..++|.+..+++|.+.+.. + .....++|+|++|+|||+||+.+++... .. .+.+....
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~---~i~v~~~~l~~~ 88 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---AN---FISIKGPELLTM 88 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CE---EEEECHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CC---EEEEEhHHHHhh
Confidence 3479999999998887753 1 3457899999999999999999998872 21 22232210
Q ss_pred --CCCHHHHHHHHHHHhcCCceEEEEecCCC
Q 039134 100 --NKNQQGRAEEIFQRLSQRRFALLLDDLRG 128 (339)
Q Consensus 100 --~~~~~~~~~~l~~~l~~k~~LlvlDdv~~ 128 (339)
..........+.......+.+|++|+++.
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTH
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHH
Confidence 11111122222223345789999999963
No 56
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=1.5e-05 Score=74.04 Aligned_cols=87 Identities=21% Similarity=0.283 Sum_probs=58.9
Q ss_pred cccchhHHHHHHHHHhhc-----------C-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC--CCC
Q 039134 37 VKKGMESILDEVWECFED-----------D-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD--NKN 102 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-----------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~~~ 102 (339)
.+.|-+..+++|.+.+.- + ..++-++++||+|+|||.||+.+++... .. .+.+..+. ..-
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~---~~---f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD---CK---FIRVSGAELVQKY 222 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT---CE---EEEEEGGGGSCSS
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC---CC---ceEEEhHHhhccc
Confidence 347889999888877642 1 4568899999999999999999999983 22 23344331 122
Q ss_pred H---HHHHHHHHHHh-cCCceEEEEecCCCC
Q 039134 103 Q---QGRAEEIFQRL-SQRRFALLLDDLRGP 129 (339)
Q Consensus 103 ~---~~~~~~l~~~l-~~k~~LlvlDdv~~~ 129 (339)
. +..+..++... ...+++|++|+++..
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai 253 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSI 253 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCC
T ss_pred cchHHHHHHHHHHHHHHhCCceEeeecchhh
Confidence 2 23333344333 467999999999754
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.95 E-value=2.9e-05 Score=78.70 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=41.5
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|||+.+++++...+... ...-++|+|++|+|||++|+.+++..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~-~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCC-CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999876 45668999999999999999999986
No 58
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=1.7e-05 Score=74.61 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=57.1
Q ss_pred cccchhHHHHHHHHHhhc----C--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--CCCC
Q 039134 37 VKKGMESILDEVWECFED----D--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--DNKN 102 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~----~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~~ 102 (339)
.+.|-+..+++|.+.+.- . +.++-|+++||+|+|||.||+.+++... .. .+.+..+ ....
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~---~~---f~~v~~s~l~~~~ 255 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN---AT---FLKLAAPQLVQMY 255 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT---CE---EEEEEGGGGCSSC
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC---CC---EEEEehhhhhhcc
Confidence 458899999888876532 1 4568899999999999999999999983 22 2333333 1111
Q ss_pred ---HHHHHHHHHHHh-cCCceEEEEecCC
Q 039134 103 ---QQGRAEEIFQRL-SQRRFALLLDDLR 127 (339)
Q Consensus 103 ---~~~~~~~l~~~l-~~k~~LlvlDdv~ 127 (339)
.+..+..++... ...+++|++|+++
T Consensus 256 vGese~~ir~lF~~A~~~aP~IifiDEiD 284 (434)
T 4b4t_M 256 IGEGAKLVRDAFALAKEKAPTIIFIDELD 284 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHCSEEEEEECTH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEeecchh
Confidence 122333333333 3578999999985
No 59
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=2.6e-05 Score=73.32 Aligned_cols=85 Identities=22% Similarity=0.320 Sum_probs=57.5
Q ss_pred cccchhHHHHHHHHHhhc-----------C-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC--CCC
Q 039134 37 VKKGMESILDEVWECFED-----------D-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD--NKN 102 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-----------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~~~ 102 (339)
.+.|-+..+++|.+.+.- + ..++-++++||+|+|||.||+.+++... .. .+.+..+. ...
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~---~~---~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK---AA---FIRVNGSEFVHKY 246 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT---CE---EEEEEGGGTCCSS
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CC---eEEEecchhhccc
Confidence 458899999888877642 1 4567899999999999999999999983 22 23334331 111
Q ss_pred ---HHHHHHHHHHHh-cCCceEEEEecCC
Q 039134 103 ---QQGRAEEIFQRL-SQRRFALLLDDLR 127 (339)
Q Consensus 103 ---~~~~~~~l~~~l-~~k~~LlvlDdv~ 127 (339)
....+..++... ...++++++|+++
T Consensus 247 ~Ge~e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 247 LGEGPRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp CSHHHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred cchhHHHHHHHHHHHHHcCCCeeechhhh
Confidence 123333344333 4678999999984
No 60
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.91 E-value=5.3e-06 Score=66.59 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=47.9
Q ss_pred ccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhcCC
Q 039134 38 KKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLSQR 117 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~k 117 (339)
.+|.+.+.-. .+..- ....++|+|++|+|||||++.++.... . ..+ .++++........ .+..+
T Consensus 20 ~~g~n~~~~~---~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~-~~~~~~~~~~~~~---------~~~~~ 83 (149)
T 2kjq_A 20 LGTENAELVY---VLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGK-NAAYIDAASMPLT---------DAAFE 83 (149)
T ss_dssp CSCCTHHHHH---HCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTC-CEEEEETTTSCCC---------GGGGG
T ss_pred CcCccHHHHH---HHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCC-cEEEEcHHHhhHH---------HHHhC
Confidence 3465544333 33332 347899999999999999999999873 2 222 2566654422221 12235
Q ss_pred ceEEEEecCCCCC
Q 039134 118 RFALLLDDLRGPI 130 (339)
Q Consensus 118 ~~LlvlDdv~~~~ 130 (339)
.-+||+||+....
T Consensus 84 ~~lLilDE~~~~~ 96 (149)
T 2kjq_A 84 AEYLAVDQVEKLG 96 (149)
T ss_dssp CSEEEEESTTCCC
T ss_pred CCEEEEeCccccC
Confidence 6789999996543
No 61
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.91 E-value=4.1e-05 Score=66.92 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=54.2
Q ss_pred cccccchhHHHHHHHHHhhc---C--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC----
Q 039134 35 LSVKKGMESILDEVWECFED---D--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD---- 99 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~---~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---- 99 (339)
-..++|.+..++++.+.+.. . ...+-++|+|++|+||||||+.+++... ..| +.+....
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~---~~~---~~i~~~~~~~~ 84 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK---VPF---FTISGSDFVEM 84 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT---CCE---EEECSCSSTTS
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC---CCE---EEEeHHHHHHH
Confidence 34579999888887765432 1 1245689999999999999999998862 222 3333221
Q ss_pred --CCCHHHHHHHHHH-HhcCCceEEEEecCC
Q 039134 100 --NKNQQGRAEEIFQ-RLSQRRFALLLDDLR 127 (339)
Q Consensus 100 --~~~~~~~~~~l~~-~l~~k~~LlvlDdv~ 127 (339)
..... ....+.+ .....+.++++|+++
T Consensus 85 ~~~~~~~-~~~~~~~~a~~~~~~il~iDeid 114 (257)
T 1lv7_A 85 FVGVGAS-RVRDMFEQAKKAAPCIIFIDEID 114 (257)
T ss_dssp CCCCCHH-HHHHHHHHHHTTCSEEEEETTHH
T ss_pred hhhhhHH-HHHHHHHHHHHcCCeeehhhhhh
Confidence 11122 2233333 334567899999984
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.91 E-value=4.6e-05 Score=77.24 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=62.9
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccC---CcceEEE-EEec-------CCCCHH
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH---NFYLVIL-VKAV-------DNKNQQ 104 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~f~~~~w-v~~~-------~~~~~~ 104 (339)
..++||+.+++++.+.+... ....++|+|++|+|||++|+.+++......- .....+| +... .....+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~-~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e 264 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHH
T ss_pred CCccCCHHHHHHHHHHHhcc-CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHH
Confidence 45799999999999999876 5667799999999999999999987631110 0122222 1111 112334
Q ss_pred HHHHHHHHHhc-CCceEEEEecCCCC
Q 039134 105 GRAEEIFQRLS-QRRFALLLDDLRGP 129 (339)
Q Consensus 105 ~~~~~l~~~l~-~k~~LlvlDdv~~~ 129 (339)
.....+.+.+. .++.+|++|+++..
T Consensus 265 ~~l~~~~~~~~~~~~~iL~IDEi~~l 290 (758)
T 1r6b_X 265 KRFKALLKQLEQDTNSILFIDEIHTI 290 (758)
T ss_dssp HHHHHHHHHHSSSSCEEEEETTTTTT
T ss_pred HHHHHHHHHHHhcCCeEEEEechHHH
Confidence 45555555554 35789999999755
No 63
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=2.9e-05 Score=73.14 Aligned_cols=87 Identities=21% Similarity=0.301 Sum_probs=58.5
Q ss_pred cccchhHHHHHHHHHhhc-----------C-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC--CCC
Q 039134 37 VKKGMESILDEVWECFED-----------D-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD--NKN 102 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-----------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~~~ 102 (339)
.+.|-+..+++|.+.+.- + ..++-|+++||+|+|||.||+.+++... .. .+.+..+. ...
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~---~~---fi~vs~s~L~sk~ 283 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD---AT---FIRVIGSELVQKY 283 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT---CE---EEEEEGGGGCCCS
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC---CC---eEEEEhHHhhccc
Confidence 358889998888876532 1 4678999999999999999999999983 22 23333331 111
Q ss_pred ---HHHHHHHHHHHh-cCCceEEEEecCCCC
Q 039134 103 ---QQGRAEEIFQRL-SQRRFALLLDDLRGP 129 (339)
Q Consensus 103 ---~~~~~~~l~~~l-~~k~~LlvlDdv~~~ 129 (339)
.+..+..++... ...+++|++|+++..
T Consensus 284 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai 314 (467)
T 4b4t_H 284 VGEGARMVRELFEMARTKKACIIFFDEIDAV 314 (467)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEECCTTT
T ss_pred CCHHHHHHHHHHHHHHhcCCceEeecccccc
Confidence 122333333333 467899999999754
No 64
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=3.5e-05 Score=71.97 Aligned_cols=86 Identities=23% Similarity=0.308 Sum_probs=57.7
Q ss_pred ccchhHHHHHHHHHhhc----C--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--CCCC-
Q 039134 38 KKGMESILDEVWECFED----D--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--DNKN- 102 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~----~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~~- 102 (339)
+-|-+..+++|.+.+.- . ..++-|+++||+|+|||.||+.+++... .. .+.+..+ ....
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~---~~---fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS---AT---FLRIVGSELIQKYL 257 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT---CE---EEEEESGGGCCSSS
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC---CC---EEEEEHHHhhhccC
Confidence 47889988888876542 1 4568899999999999999999999983 22 2333333 1111
Q ss_pred --HHHHHHHHHHHh-cCCceEEEEecCCCC
Q 039134 103 --QQGRAEEIFQRL-SQRRFALLLDDLRGP 129 (339)
Q Consensus 103 --~~~~~~~l~~~l-~~k~~LlvlDdv~~~ 129 (339)
.+..+..++... ...+++|++|+++..
T Consensus 258 Gesek~ir~lF~~Ar~~aP~IIfiDEiDai 287 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENAPSIVFIDEIDAI 287 (437)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEEESSS
T ss_pred chHHHHHHHHHHHHHhcCCcEEEEehhhhh
Confidence 223333444333 467899999998643
No 65
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.81 E-value=1.3e-05 Score=63.67 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=59.4
Q ss_pred cccchhHHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhc
Q 039134 37 VKKGMESILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLS 115 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 115 (339)
.++|++..++++.+.+..- .....|.|+|++|+|||++|+.+++.. . ..+.++... -.......+...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----~---~~~~~~~~~--~~~~~~~~~~~~-- 73 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----T---PWVSPARVE--YLIDMPMELLQK-- 73 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----S---CEECCSSTT--HHHHCHHHHHHH--
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----C---CeEEechhh--CChHhhhhHHHh--
Confidence 4689999999988887641 134568899999999999999988775 2 222221111 011111222222
Q ss_pred CCceEEEEecCCCCCC--ccccc---CC-CCCCceEEEeCCC
Q 039134 116 QRRFALLLDDLRGPIN--LDEAG---VP-DQNGSKIVFTTIM 151 (339)
Q Consensus 116 ~k~~LlvlDdv~~~~~--l~~l~---~~-~~~~~~ilvTsR~ 151 (339)
.+.-.|++|+++.... ...+. .. ...+.++|+||..
T Consensus 74 a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 74 AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 2356889999976642 11111 11 2345677776653
No 66
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.81 E-value=4.7e-05 Score=68.09 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=41.4
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC--CCC---HHHHHHHHHHHh-----cCCceEEEEec
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD--NKN---QQGRAEEIFQRL-----SQRRFALLLDD 125 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~~~---~~~~~~~l~~~l-----~~k~~LlvlDd 125 (339)
..+..++|+|++|+|||+||+.+++... ..| +.+..+. ... .......+.... ..++.+|+||+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~---~~~---i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDE 107 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG---INP---IMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFIND 107 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT---CCC---EEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CCE---EEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 3457889999999999999999999883 222 2333221 111 112222222222 45789999999
Q ss_pred CCC
Q 039134 126 LRG 128 (339)
Q Consensus 126 v~~ 128 (339)
++.
T Consensus 108 iD~ 110 (293)
T 3t15_A 108 LDA 110 (293)
T ss_dssp CC-
T ss_pred hhh
Confidence 953
No 67
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.80 E-value=3.6e-05 Score=68.88 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=57.6
Q ss_pred ccccchhHHHHHHHHHhhc-------------CCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC--
Q 039134 36 SVKKGMESILDEVWECFED-------------DFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN-- 100 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-- 100 (339)
+.++|++..++.+...+.. ......++|+|++|+|||++|+.+++... .. .+.+.....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~---~~---~~~i~~~~~~~ 88 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN---AP---FIKVEATKFTE 88 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT---CC---EEEEEGGGGSS
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC---CC---EEEEcchhccc
Confidence 4579999999999888764 12356789999999999999999998873 21 233433311
Q ss_pred -----CCHHHHHHHHHHHhc------CCceEEEEecCCCC
Q 039134 101 -----KNQQGRAEEIFQRLS------QRRFALLLDDLRGP 129 (339)
Q Consensus 101 -----~~~~~~~~~l~~~l~------~k~~LlvlDdv~~~ 129 (339)
.+.......+..... +.+.+|+||+++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 89 VGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 112223333333211 24679999999654
No 68
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.78 E-value=5.4e-05 Score=67.87 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=40.0
Q ss_pred ccccchhHHHHHHHHHhhcC--------CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 36 SVKKGMESILDEVWECFEDD--------FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..++|.+..++.+...+... .....++|+|++|+|||++|+.++....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 45789999999998888752 1236899999999999999999999874
No 69
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.68 E-value=5.9e-05 Score=76.18 Aligned_cols=87 Identities=22% Similarity=0.263 Sum_probs=57.9
Q ss_pred cccchhHHHHHHHHHhhc----C--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--CCCC
Q 039134 37 VKKGMESILDEVWECFED----D--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--DNKN 102 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~----~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~~ 102 (339)
.+.|-+..+++|.+.+.- . ..++-|+++|++|+|||+||+.+++... .+ .+.+... ....
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg---~~---~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AF---FFLINGPEIMSKL 278 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT---CE---EEEEEHHHHHSSC
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---Ce---EEEEEhHHhhccc
Confidence 357888888888877532 1 3567899999999999999999999873 22 2344433 1111
Q ss_pred ---HHHHHHHHHHHh-cCCceEEEEecCCCC
Q 039134 103 ---QQGRAEEIFQRL-SQRRFALLLDDLRGP 129 (339)
Q Consensus 103 ---~~~~~~~l~~~l-~~k~~LlvlDdv~~~ 129 (339)
.+..+..+++.. ...+++|+||+++..
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal 309 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAI 309 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGT
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhccc
Confidence 223333333333 467999999999644
No 70
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.64 E-value=0.00022 Score=67.81 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=56.0
Q ss_pred ccccchhHHHHHHHHHh---hcC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec----CCCCHHHHH
Q 039134 36 SVKKGMESILDEVWECF---EDD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV----DNKNQQGRA 107 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l---~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~----~~~~~~~~~ 107 (339)
..++|.+..++.+...+ ..+ ...+.++++|++|+|||+||+.+++... ..+ ..+.+..+ ......+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~---~~~-~~~~~~~~~~~~~~~~~~~~~ 112 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG---SKV-PFCPMVGSEVYSTEIKKTEVL 112 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC---TTS-CEEEEEGGGGCCSSSCHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC---CCc-eEEEEeHHHHHHHhhhhhHHH
Confidence 56799999988655544 333 2346799999999999999999999973 222 22333333 111222223
Q ss_pred HHHHHHh----cCCceEEEEecCCC
Q 039134 108 EEIFQRL----SQRRFALLLDDLRG 128 (339)
Q Consensus 108 ~~l~~~l----~~k~~LlvlDdv~~ 128 (339)
..+++.. ..++.+|++|+++.
T Consensus 113 ~~~f~~a~~~~~~~~~il~iDEid~ 137 (456)
T 2c9o_A 113 MENFRRAIGLRIKETKEVYEGEVTE 137 (456)
T ss_dssp HHHHHHTEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHhhhhcCCcEEEEechhh
Confidence 3333333 34678999999853
No 71
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.63 E-value=0.00016 Score=69.00 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=55.5
Q ss_pred ccccchhHHHHHHHHHhhc---C--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCC--C
Q 039134 36 SVKKGMESILDEVWECFED---D--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNK--N 102 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~---~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~ 102 (339)
..++|.+..++++.+.+.. . ..++-++|+|++|+|||+||+.++.... ..| +.++.+... -
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~---~~f---~~is~~~~~~~~ 89 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN---VPF---FHISGSDFVELF 89 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT---CCE---EEEEGGGTTTCC
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC---CCe---eeCCHHHHHHHH
Confidence 3579999988877776532 1 1234589999999999999999998872 222 233333111 0
Q ss_pred ---HHHHHHH-HHHHhcCCceEEEEecCCCC
Q 039134 103 ---QQGRAEE-IFQRLSQRRFALLLDDLRGP 129 (339)
Q Consensus 103 ---~~~~~~~-l~~~l~~k~~LlvlDdv~~~ 129 (339)
....... +.......+.+|+||+++..
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l 120 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAV 120 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 1122222 33334567899999999653
No 72
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.55 E-value=0.00023 Score=62.91 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=53.1
Q ss_pred cccchhHHHHHHHHHhhc-----------C-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC--CC
Q 039134 37 VKKGMESILDEVWECFED-----------D-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN--KN 102 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-----------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~ 102 (339)
.+.|-+...++|.+.+.. + ...+-++|+|++|+||||||+.++.... . ..+++..... ..
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~---~---~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG---L---NFISVKGPELLNMY 84 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT---C---EEEEEETTTTCSST
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC---C---CEEEEEcHHHHhhh
Confidence 357777777777765421 0 1223399999999999999999998762 1 2344443321 11
Q ss_pred H---HHHHHHHHHHh-cCCceEEEEecCCC
Q 039134 103 Q---QGRAEEIFQRL-SQRRFALLLDDLRG 128 (339)
Q Consensus 103 ~---~~~~~~l~~~l-~~k~~LlvlDdv~~ 128 (339)
. ...+..+.+.. ...+.++++|+++.
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDA 114 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTT
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhh
Confidence 1 22233344433 45688999999965
No 73
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.52 E-value=9.9e-05 Score=66.41 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=46.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEe--c-----CCCCHHHHHHHHHHHhcCCceEEEEecCCCC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKA--V-----DNKNQQGRAEEIFQRLSQRRFALLLDDLRGP 129 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~--~-----~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~ 129 (339)
..+++.|+|++|+|||+||.+++.... . .++|++. . -..+.+.....+.+.+...+ ++|+|++...
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G---~---~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALG---G---KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHH---T---TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCC---C---CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEeccccc
Confidence 346789999999999999999987621 1 2344444 1 11345666667777776666 9999999654
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.51 E-value=0.00024 Score=71.90 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=57.6
Q ss_pred ccccchhHHHHHHHHHhhcC--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCC--CHHH
Q 039134 36 SVKKGMESILDEVWECFEDD--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNK--NQQG 105 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~ 105 (339)
..++|.+..++.+...+... .....++++|++|+|||++|+.+++... ..-...+.++++.-. ....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechhcccccccc
Confidence 45799999999988888641 1234799999999999999999999874 222334555555111 0000
Q ss_pred HHHHHHHHhc-CCceEEEEecCCCCC
Q 039134 106 RAEEIFQRLS-QRRFALLLDDLRGPI 130 (339)
Q Consensus 106 ~~~~l~~~l~-~k~~LlvlDdv~~~~ 130 (339)
...+...+. ....+|+||+++...
T Consensus 568 -~~~l~~~~~~~~~~vl~lDEi~~~~ 592 (758)
T 3pxi_A 568 -GGQLTEKVRRKPYSVVLLDAIEKAH 592 (758)
T ss_dssp ----CHHHHHHCSSSEEEEECGGGSC
T ss_pred -cchhhHHHHhCCCeEEEEeCccccC
Confidence 111222222 345699999997653
No 75
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.50 E-value=0.00031 Score=61.13 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=51.8
Q ss_pred ccccchhHHHHHHHHHhhc--C---------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec----CC
Q 039134 36 SVKKGMESILDEVWECFED--D---------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV----DN 100 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~--~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~----~~ 100 (339)
..++|.+....++.+.... . .-.+-++|+|++|+|||||++.++.... ...+.+... ..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~------~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASGSDFVEMF 89 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEHHHHHHSC
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CCEEEeeHHHHHHHH
Confidence 4578988777776654432 1 1123399999999999999999998862 223333322 00
Q ss_pred CC-HHHHHHHHHHHhc-CCceEEEEecCC
Q 039134 101 KN-QQGRAEEIFQRLS-QRRFALLLDDLR 127 (339)
Q Consensus 101 ~~-~~~~~~~l~~~l~-~k~~LlvlDdv~ 127 (339)
.. .......+.+... ..+.++++|+++
T Consensus 90 ~~~~~~~i~~~~~~~~~~~~~i~~~Deid 118 (254)
T 1ixz_A 90 VGVGAARVRDLFETAKRHAPCIVFIDEID 118 (254)
T ss_dssp TTHHHHHHHHHHHHHTTSSSEEEEEETHH
T ss_pred hhHHHHHHHHHHHHHHhcCCeEEEehhhh
Confidence 11 1122333344433 457899999984
No 76
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.44 E-value=0.00054 Score=60.49 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=52.7
Q ss_pred cccccchhHHHHHHHHHhhc--C---------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC----
Q 039134 35 LSVKKGMESILDEVWECFED--D---------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD---- 99 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~--~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---- 99 (339)
...++|.+...+++.+.... . .-.+-++|+|++|+|||||++.++.... ...+.+....
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~------~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASGSDFVEM 112 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEHHHHHHS
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC------CCEEEecHHHHHHH
Confidence 34579998887777665432 0 1123389999999999999999998862 2233333221
Q ss_pred CCC-HHHHHHHHHHHhc-CCceEEEEecCC
Q 039134 100 NKN-QQGRAEEIFQRLS-QRRFALLLDDLR 127 (339)
Q Consensus 100 ~~~-~~~~~~~l~~~l~-~k~~LlvlDdv~ 127 (339)
... .......+.+... ..+.++++|+++
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEID 142 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHH
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhH
Confidence 011 1122233333332 467899999984
No 77
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.36 E-value=0.00016 Score=73.62 Aligned_cols=87 Identities=23% Similarity=0.296 Sum_probs=57.1
Q ss_pred ccccchhHHHHHHHHHhhc-----------C-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec--CCC
Q 039134 36 SVKKGMESILDEVWECFED-----------D-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV--DNK 101 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~-----------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~~~ 101 (339)
..++|.+..+++|.+++.. . .....++|+|++|+||||||+.++.... ..| +.+... ...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~---~~~---i~v~~~~l~~~ 277 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFF---FLINGPEIMSK 277 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT---CEE---EEEEHHHHSSS
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC---CcE---EEEEchHhhhh
Confidence 3469999999999888753 1 3456899999999999999999988762 222 333322 111
Q ss_pred C---HHHHHHHHHH-HhcCCceEEEEecCCC
Q 039134 102 N---QQGRAEEIFQ-RLSQRRFALLLDDLRG 128 (339)
Q Consensus 102 ~---~~~~~~~l~~-~l~~k~~LlvlDdv~~ 128 (339)
. .......+.+ .....+.++++|+++.
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 308 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHH
Confidence 1 1222222332 2345688999999953
No 78
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.35 E-value=0.00057 Score=63.12 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=37.6
Q ss_pred ccccchhHHHHHHHHHhhc-----------------------------CCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFED-----------------------------DFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~-----------------------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++|.+..++.|...+.. ......++|+|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999988877720 0134578999999999999999999887
No 79
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.31 E-value=0.00015 Score=65.32 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHhhcCC--CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 41 MESILDEVWECFEDDF--PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 41 R~~~~~~l~~~l~~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...++.+.+++...+ ....+.|+|++|+|||+||..+++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4445556666766521 24788999999999999999999987
No 80
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.29 E-value=0.00078 Score=64.58 Aligned_cols=87 Identities=20% Similarity=0.150 Sum_probs=54.9
Q ss_pred ccccchhHHHHHHHHHhhc---C--------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC--CCC
Q 039134 36 SVKKGMESILDEVWECFED---D--------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD--NKN 102 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~---~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~~~ 102 (339)
..++|.+..+.++.+.... . .-.+-++|+|++|+|||+||+.++.... . ..+.+.... ...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~---~---~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---V---PFITASGSDFVEMF 104 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT---C---CEEEEEGGGGTSSC
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---C---CEEEEehhHHHHhh
Confidence 4579999888777766432 1 1123499999999999999999998862 2 234444331 111
Q ss_pred HHHHHHHHHHHhcC----CceEEEEecCCC
Q 039134 103 QQGRAEEIFQRLSQ----RRFALLLDDLRG 128 (339)
Q Consensus 103 ~~~~~~~l~~~l~~----k~~LlvlDdv~~ 128 (339)
.......+...++. .+.++++|+++.
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~ 134 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDA 134 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGG
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHH
Confidence 22233334444432 458999999954
No 81
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.28 E-value=0.00019 Score=65.13 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=40.1
Q ss_pred cccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.++|++..++.+...+..+ ..++|+|++|+|||+||+.+++..
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~---~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG---GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT---CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred ccceeCcHHHHHHHHHHHHcC---CeEEEECCCCCcHHHHHHHHHHHh
Confidence 456899999999999988876 578999999999999999999877
No 82
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.20 E-value=0.0014 Score=59.99 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=49.3
Q ss_pred HHHHHhh-cC-CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---------------------CCCCH
Q 039134 47 EVWECFE-DD-FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---------------------DNKNQ 103 (339)
Q Consensus 47 ~l~~~l~-~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---------------------~~~~~ 103 (339)
.|-..|. .+ +...++.|.|++|+|||||+.+++.... . .-..++|++.. ...+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~-~--~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~ 124 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ-K--MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHG 124 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH-H--TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH-h--cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCH
Confidence 3444454 32 4568999999999999999999998863 1 11245677654 22334
Q ss_pred HHHHHHHHHHhc-CCceEEEEecCCC
Q 039134 104 QGRAEEIFQRLS-QRRFALLLDDLRG 128 (339)
Q Consensus 104 ~~~~~~l~~~l~-~k~~LlvlDdv~~ 128 (339)
++....+...++ .+.-++|+|.+..
T Consensus 125 e~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 125 EQALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred HHHHHHHHHHhhhcCCCeEEehHhhh
Confidence 444444444333 4556788887743
No 83
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.12 E-value=0.00034 Score=67.16 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=39.9
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.++|++..++.+...+..+ .-++|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~---~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG---ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT---CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC---CeeEeecCchHHHHHHHHHHHHHH
Confidence 56899999999999888877 678999999999999999999876
No 84
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.12 E-value=0.00066 Score=56.90 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=35.7
Q ss_pred chhHHHHHHHHHhhcC--CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 40 GMESILDEVWECFEDD--FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 40 GR~~~~~~l~~~l~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.|++.++.|.+.+... ....+++|.|++|+||||+++.+...+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4677788888887752 356899999999999999999998876
No 85
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.11 E-value=0.00035 Score=61.19 Aligned_cols=47 Identities=19% Similarity=0.122 Sum_probs=36.2
Q ss_pred cccchhHHHHHHHHHhhc-CCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 37 VKKGMESILDEVWECFED-DFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.++|++..+.++.+.+.. ......+.|+|++|+|||++|+.+++...
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 479999999988877754 11346788999999999999999998863
No 86
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.06 E-value=0.009 Score=54.21 Aligned_cols=154 Identities=8% Similarity=-0.113 Sum_probs=90.6
Q ss_pred HHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHH-HhcCCceEEEEecC
Q 039134 48 VWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQ-RLSQRRFALLLDDL 126 (339)
Q Consensus 48 l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv 126 (339)
+.+.+.. .-.++++++|+.|.||++.+..+.+... ...|+....+......+..+..+.+.. -+-+.+-++|+|++
T Consensus 9 l~~~l~~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 9 LRAQLNE-GLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp HHHHHHH-CCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred HHHHHhc-CCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 4444542 3568999999999999999999988763 123432222223334455555554432 24567788899998
Q ss_pred CC-CC--Ccccc---cCCCCCCceEEE-eCCC------hHHHhh-cCCCceEEecCCCCcc------Cc--cCCChhHHH
Q 039134 127 RG-PI--NLDEA---GVPDQNGSKIVF-TTIM------EDACNT-MGDQIKFKVDYLRRDD------DV--LNFHPDILE 184 (339)
Q Consensus 127 ~~-~~--~l~~l---~~~~~~~~~ilv-TsR~------~~~~~~-~~~~~~~~l~~L~~~~------~~--~~~~~~~~~ 184 (339)
+. .. ..+.+ ......++.+|+ |+.. ..+... ......++..+++..+ .. ...-.-..+
T Consensus 86 ~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~ 165 (343)
T 1jr3_D 86 ENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDA 165 (343)
T ss_dssp SSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHH
T ss_pred CCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 66 32 23333 111233455554 4431 123222 2344678899998877 11 112233467
Q ss_pred HHHHHHHHcCCChHHHHHHH
Q 039134 185 LAETVADLCRGLPLAHITIG 204 (339)
Q Consensus 185 ~~~~i~~~~~G~Plal~~~~ 204 (339)
.+..+++.++|.+..+....
T Consensus 166 a~~~l~~~~~gdl~~~~~el 185 (343)
T 1jr3_D 166 ANQVLCYCYEGNLLALAQAL 185 (343)
T ss_dssp HHHHHHHSSTTCHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHH
Confidence 78889999999888776543
No 87
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.02 E-value=0.0037 Score=56.02 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=28.9
Q ss_pred EEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
++.|.|++|+|||||+.+++.... ....-..++|++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E 67 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSE 67 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEecc
Confidence 799999999999999999988873 11112357788765
No 88
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.95 E-value=0.0025 Score=58.32 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=45.6
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC---------------------CCCHHHHHHHHHHHh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD---------------------NKNQQGRAEEIFQRL 114 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---------------------~~~~~~~~~~l~~~l 114 (339)
+...++.|.|++|+||||||.+++.... ..-..++|++... ..+.++....+....
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 3558999999999999999999987763 1123467776552 122333333333333
Q ss_pred -cCCceEEEEecCCC
Q 039134 115 -SQRRFALLLDDLRG 128 (339)
Q Consensus 115 -~~k~~LlvlDdv~~ 128 (339)
+.+.-++|+|.+..
T Consensus 136 ~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 136 RSGALDIIVIDSVAA 150 (349)
T ss_dssp TTTCCSEEEEECGGG
T ss_pred hcCCCCEEEEcChHh
Confidence 24577999998843
No 89
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.94 E-value=0.00081 Score=60.34 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=38.6
Q ss_pred cccchhHHHHHHHHHhhc-CCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 37 VKKGMESILDEVWECFED-DFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|++..+.++.+.+.. ......|+|+|++|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 479999999999888865 1245678899999999999999999875
No 90
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.93 E-value=0.0016 Score=65.77 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=56.4
Q ss_pred cccchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec------
Q 039134 37 VKKGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------ 98 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------ 98 (339)
.+.|-+...++|.+.+.-. ...+-++++||+|+|||.+|+.+++... . -++.+.
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~---~-----~f~~v~~~~l~s 549 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---A-----NFISIKGPELLT 549 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT---C-----EEEECCHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC---C-----ceEEeccchhhc
Confidence 3467888887777765421 3456789999999999999999999973 2 122322
Q ss_pred --CCCCHHHHHHHHHHHh-cCCceEEEEecCCC
Q 039134 99 --DNKNQQGRAEEIFQRL-SQRRFALLLDDLRG 128 (339)
Q Consensus 99 --~~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~ 128 (339)
...+ +..+..++... +..+++|+||+++.
T Consensus 550 ~~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 550 MWFGES-EANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp TTCSSC-HHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred cccchH-HHHHHHHHHHHHHcCCceeechhhhH
Confidence 1223 33455555555 45799999999964
No 91
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.92 E-value=0.0004 Score=63.16 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=35.3
Q ss_pred ccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++|.+..+..+...+... ....++|+|++|+|||+||+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~-~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP-GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG-GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCC-CCceEEEECCCCccHHHHHHHHHHhC
Confidence 45799998766655544432 23459999999999999999999876
No 92
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.89 E-value=0.0031 Score=57.99 Aligned_cols=69 Identities=19% Similarity=0.146 Sum_probs=46.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC---------------------CCCHHHHHHHHHHHhc
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD---------------------NKNQQGRAEEIFQRLS 115 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---------------------~~~~~~~~~~l~~~l~ 115 (339)
...++.|.|++|+|||+||.+++.... ..-..++|++... ..+.++....+....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~---~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ---KAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH---HCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 457899999999999999999988763 1123577887652 1233444444444443
Q ss_pred -CCceEEEEecCCC
Q 039134 116 -QRRFALLLDDLRG 128 (339)
Q Consensus 116 -~k~~LlvlDdv~~ 128 (339)
...-+||+|.+..
T Consensus 150 ~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 150 SGAIDVVVVDSVAA 163 (366)
T ss_dssp TTCCSEEEEECTTT
T ss_pred cCCCCEEEEeChHH
Confidence 3566899999843
No 93
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.89 E-value=0.00088 Score=61.46 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=57.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec----------------CCCCHHHHHHHHHHHhcCCceEE
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV----------------DNKNQQGRAEEIFQRLSQRRFAL 121 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~----------------~~~~~~~~~~~l~~~l~~k~~Ll 121 (339)
...++|+|+.|+|||||.+.++........ ..++.+... ...........+.+.|...+=+|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~--~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKY--HHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCC--CEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCC--cEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 469999999999999999988876631100 111111111 11112345557888899999999
Q ss_pred EEecCCCCCCcccccCCCCCCceEEEeCCChH
Q 039134 122 LLDDLRGPINLDEAGVPDQNGSKIVFTTIMED 153 (339)
Q Consensus 122 vlDdv~~~~~l~~l~~~~~~~~~ilvTsR~~~ 153 (339)
++|...+.+.+..+......|..+++|+....
T Consensus 201 llDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 201 LVGEMRDLETIRLALTAAETGHLVFGTLHTTS 232 (356)
T ss_dssp EESCCCSHHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred ecCCCCCHHHHHHHHHHHhcCCEEEEEEccCh
Confidence 99999754433332111233556777776543
No 94
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.88 E-value=0.00084 Score=61.69 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=38.2
Q ss_pred cccchhHHHHHHHHHhhc------------C--CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 37 VKKGMESILDEVWECFED------------D--FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~------------~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|.+..++.+...+.. . .....++|+|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999888831 0 134678999999999999999999887
No 95
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.87 E-value=0.00093 Score=56.27 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 43 SILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 43 ~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+++|.+.+... +...+++|.|++|+|||||++.++...
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455666666542 367899999999999999999998877
No 96
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.87 E-value=0.003 Score=53.16 Aligned_cols=37 Identities=30% Similarity=0.286 Sum_probs=27.9
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+...++.|.|++|+|||||+..++. .. . ..++|+...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~-~~---~--~~v~~i~~~ 54 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL-LS---G--KKVAYVDTE 54 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH-HH---C--SEEEEEESS
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH-Hc---C--CcEEEEECC
Confidence 3557999999999999999999987 31 1 245666543
No 97
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.83 E-value=0.0006 Score=55.64 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|.|+|++|+||||+|+.++..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3679999999999999999999987
No 98
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.80 E-value=0.0034 Score=57.56 Aligned_cols=40 Identities=25% Similarity=0.230 Sum_probs=30.8
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+...++.|.|++|+||||||.+++.... . .-..++|++..
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~-~--~g~~vlyid~E 100 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQ-R--EGKTCAFIDAE 100 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHH-H--TTCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-H--CCCeEEEEeCC
Confidence 3557999999999999999999998763 1 12357777764
No 99
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.74 E-value=0.003 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|+|.|++|+||+|.|+.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887
No 100
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.72 E-value=0.00084 Score=54.27 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=22.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+|+|.|++|+||||+++.++..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999887
No 101
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.71 E-value=0.007 Score=55.73 Aligned_cols=36 Identities=19% Similarity=0.055 Sum_probs=27.5
Q ss_pred HHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 48 VWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 48 l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+++.+..-.+...++|+|++|+|||||++.+++...
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 344444423568999999999999999999888763
No 102
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.70 E-value=0.0016 Score=57.86 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=24.1
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....+++|.|++|+||||+|+.++...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999998876
No 103
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.70 E-value=0.0024 Score=65.48 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=38.8
Q ss_pred cccchhHHHHHHHHHhhcC--------CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 37 VKKGMESILDEVWECFEDD--------FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.++|.+..++.+...+... .....++|+|++|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4699999999988887542 1236899999999999999999998874
No 104
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.70 E-value=0.0011 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|.|++|+||||+++.++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999999876
No 105
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.68 E-value=0.0013 Score=55.21 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=34.1
Q ss_pred cchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 39 KGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
|.-..-+..+..++..-+....++|+|++|+|||++|..+++..
T Consensus 39 ~~~~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 39 IEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CCHHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 44445567777777654344679999999999999999999887
No 106
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.68 E-value=0.00092 Score=55.84 Aligned_cols=26 Identities=46% Similarity=0.519 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|+|++|+||||+++.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34789999999999999999999887
No 107
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.64 E-value=0.0012 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||++.++..+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 45789999999999999999998764
No 108
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.63 E-value=0.0011 Score=53.92 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.7
Q ss_pred EEEEEEeCCCchHHHHHHHHHh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNS 80 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~ 80 (339)
.+|+|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999988
No 109
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.62 E-value=0.0013 Score=54.92 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=24.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||++.++..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999887
No 110
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.61 E-value=0.0014 Score=64.58 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=42.3
Q ss_pred cccCccccccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 30 DKVDTLSVKKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 30 ~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
-++.....++|.+..++.+...+..+ ..++|+|++|+||||||+.++...
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~~g---~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAANQK---RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccccccceEECchhhHhhccccccCC---CEEEEEeCCCCCHHHHHHHHhccC
Confidence 33344456799999999988888877 689999999999999999999876
No 111
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.60 E-value=0.0011 Score=54.47 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.|+|+|++|+||||+|+.++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999887
No 112
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.60 E-value=0.0011 Score=53.53 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 544
No 113
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.59 E-value=0.0013 Score=54.10 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=22.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..|+|.|++|+||||+++.+++.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999873
No 114
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.57 E-value=0.011 Score=53.85 Aligned_cols=49 Identities=16% Similarity=0.065 Sum_probs=34.1
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccC---CcceEEEEEecCCCCHH
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRH---NFYLVILVKAVDNKNQQ 104 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~f~~~~wv~~~~~~~~~ 104 (339)
+...++.|+|++|+|||+||.+++........ .-..++|++.....+.+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~ 171 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPD 171 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHH
Confidence 45689999999999999999999987421110 12467788766443333
No 115
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.53 E-value=0.0025 Score=55.10 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHhhc-CCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 40 GMESILDEVWECFED-DFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 40 GR~~~~~~l~~~l~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+....+.++...+.. ...+..|+|.|++|+||||+|+.+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 444455555544443 2356889999999999999999999876
No 116
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.51 E-value=0.0014 Score=55.29 Aligned_cols=26 Identities=35% Similarity=0.280 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|++|+|||||++.++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999876
No 117
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.0013 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+++|+|++|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998865
No 118
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.50 E-value=0.0022 Score=55.73 Aligned_cols=27 Identities=37% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+..++|.|++|+||||+|+.++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999999876
No 119
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.48 E-value=0.0016 Score=53.75 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=23.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|.|++|+||||+|+.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999999887
No 120
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.48 E-value=0.0034 Score=55.82 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=25.0
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+...+|+|.|++|+||||||+.+...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999999988873
No 121
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.47 E-value=0.0012 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=22.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+|+|+|++|+|||||++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999886
No 122
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.47 E-value=0.0014 Score=53.70 Aligned_cols=25 Identities=48% Similarity=0.515 Sum_probs=22.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...|+|+|++|+||||+++.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999876
No 123
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.45 E-value=0.0016 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=22.5
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..|+|.|++|+||||+++.++..+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 124
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.45 E-value=0.0013 Score=54.99 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 125
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.44 E-value=0.002 Score=52.32 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|++|+||||+++.++...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998765
No 126
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.44 E-value=0.0016 Score=54.37 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=23.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||++.++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999998876
No 127
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.44 E-value=0.0018 Score=53.30 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998876
No 128
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.44 E-value=0.0032 Score=61.10 Aligned_cols=46 Identities=28% Similarity=0.527 Sum_probs=36.4
Q ss_pred cccchhHHHHHHHHHhhc-----CCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 37 VKKGMESILDEVWECFED-----DFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|-+...+.+.+.+.- ......++|+|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 368888888877665432 1245689999999999999999999887
No 129
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.43 E-value=0.0039 Score=52.77 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 42 ESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 42 ~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...+.+...+... ....|+|+|.+|+|||||+..++...
T Consensus 23 ~~~a~~~r~~~~~~-~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKH-GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33445555555544 67889999999999999999999876
No 130
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.42 E-value=0.0041 Score=53.31 Aligned_cols=41 Identities=24% Similarity=0.148 Sum_probs=28.6
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+...++.|.|++|+|||+||.+++.+... ..-..+++++..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~--~~~~~v~~~s~E 68 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAE--EYGEPGVFVTLE 68 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHH--HHCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH--hcCCCceeeccc
Confidence 35589999999999999999998765321 222345666543
No 131
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.41 E-value=0.002 Score=52.84 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...|+|.|++|+||||+++.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 132
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.41 E-value=0.0056 Score=55.60 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=30.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
...+++|.|.+|+||||||..++..... .-..++|++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE 83 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE 83 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC
Confidence 4589999999999999999999988742 22356677654
No 133
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.40 E-value=0.0021 Score=54.62 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=24.7
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++|+|.|++|+||||.|+.+++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999887
No 134
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.40 E-value=0.0013 Score=55.04 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34789999999999999999998876
No 135
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.39 E-value=0.0014 Score=54.28 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=21.6
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.|+|.||+|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998876
No 136
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.38 E-value=0.0019 Score=56.20 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=22.1
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+++|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 578999999999999999999876
No 137
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.38 E-value=0.004 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=21.2
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...|.|++..|.||||+|-..+-+..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~ 53 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV 53 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46777777778999999998888774
No 138
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.38 E-value=0.0022 Score=53.49 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|.|++|+||||+++.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56799999999999999999999876
No 139
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.38 E-value=0.0019 Score=53.89 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+++|.|++|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 140
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.37 E-value=0.0022 Score=53.60 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.6
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...|+|.|++|+||||+|+.+++.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999999873
No 141
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.32 E-value=0.0022 Score=52.83 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
....|+|+|++|+||||+++.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999887
No 142
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.32 E-value=0.002 Score=52.02 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|.|++|+||||+++.++..+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999887
No 143
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.31 E-value=0.0021 Score=53.60 Aligned_cols=25 Identities=36% Similarity=0.327 Sum_probs=22.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+++|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998876
No 144
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.29 E-value=0.0022 Score=53.09 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=23.1
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|+|.|++|+||||+|+.++..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999987
No 145
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.29 E-value=0.012 Score=55.51 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.2
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.++|+|++|+|||||+..++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3568999999999999999998876
No 146
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.29 E-value=0.0027 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=23.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|+|.|++|+||||+|+.+++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 147
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.29 E-value=0.0014 Score=53.62 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=18.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|+|.|++|+||||+|+.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998876
No 148
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.28 E-value=0.003 Score=59.50 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=38.1
Q ss_pred ccccchhHHHHHHHHHhhcC-------------CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 36 SVKKGMESILDEVWECFEDD-------------FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..++|.+...+.|...+... ...+-++++|++|+|||++|+.++....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45799999888887776321 1346799999999999999999999873
No 149
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.27 E-value=0.0023 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=21.7
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 150
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.27 E-value=0.0022 Score=52.21 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.0
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..|+|.|++|+||||+|+.++..+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999887
No 151
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.26 E-value=0.0041 Score=52.41 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 42 ESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 42 ~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++..+++...+... ..+.++|+|.+|+|||||+..++...
T Consensus 15 ~~~~~~~~~~~~~~-~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 15 KRLAEKNREALRES-GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc-CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 44555556655544 67899999999999999999999886
No 152
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.26 E-value=0.0029 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=23.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|+.|+|||||++.++...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 153
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.26 E-value=0.0055 Score=55.83 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=33.7
Q ss_pred cchhHHHHHHHHHhhc---CCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 39 KGMESILDEVWECFED---DFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
|+-+...+++.+.+.. .+....++|.|++|+||||+++.++..+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4455666666666642 22567799999999999999999988763
No 154
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.24 E-value=0.0027 Score=53.25 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...|+|.|++|+||||+++.+++.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999873
No 155
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.24 E-value=0.0078 Score=55.35 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=28.5
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 47 EVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 47 ~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++++.+..-.+.+.++|.|++|+|||+|+..+++..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 455555552356888999999999999999998875
No 156
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.24 E-value=0.0067 Score=54.95 Aligned_cols=68 Identities=21% Similarity=0.264 Sum_probs=46.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCC------C--------CHHHHHHHHHHHhcCCceEEEEe
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDN------K--------NQQGRAEEIFQRLSQRRFALLLD 124 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~------~--------~~~~~~~~l~~~l~~k~~LlvlD 124 (339)
..++|+|+.|+|||||++.++.... .-.+.+.+..... . ........+.+.+..++-+|++|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~----~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP----KEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC----TTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc----CCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEc
Confidence 6899999999999999999988762 2233444432200 0 12334456667778888999999
Q ss_pred cCCCCC
Q 039134 125 DLRGPI 130 (339)
Q Consensus 125 dv~~~~ 130 (339)
...+.+
T Consensus 248 E~~~~e 253 (330)
T 2pt7_A 248 ELRSSE 253 (330)
T ss_dssp CCCSTH
T ss_pred CCChHH
Confidence 987643
No 157
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.23 E-value=0.0031 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=24.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...+|+|.|++|+||||+++.++..+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 458899999999999999999998873
No 158
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.23 E-value=0.0026 Score=53.02 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|.|++|+||||+|+.++..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999999887
No 159
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.23 E-value=0.0075 Score=51.39 Aligned_cols=92 Identities=13% Similarity=0.050 Sum_probs=52.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC--------------------CCCHHHHHHHHHHHhcC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD--------------------NKNQQGRAEEIFQRLSQ 116 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--------------------~~~~~~~~~~l~~~l~~ 116 (339)
...+++++|+.|+||||++..++.+.. . .... ++.+.... .....+..+.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~-~-~g~k-Vli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE-Y-ADVK-YLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH-H-TTCC-EEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH-h-cCCE-EEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 358999999999999999999988873 1 1222 22222110 01112333333333333
Q ss_pred -CceEEEEecCCCCC--CcccccCCCCCCceEEEeCCC
Q 039134 117 -RRFALLLDDLRGPI--NLDEAGVPDQNGSKIVFTTIM 151 (339)
Q Consensus 117 -k~~LlvlDdv~~~~--~l~~l~~~~~~~~~ilvTsR~ 151 (339)
+.-++++|.+.... +++.+..-...+..+|+|.+.
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLD 125 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCS
T ss_pred CCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 34599999996432 222221112237888888884
No 160
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.23 E-value=0.0021 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHH
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFN 79 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~ 79 (339)
...+++|+|++|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45799999999999999999643
No 161
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.22 E-value=0.0018 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=22.0
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++|+|+|++|+||||+|+.++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999886
No 162
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.21 E-value=0.0029 Score=55.28 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=23.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999875
No 163
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.19 E-value=0.0028 Score=53.04 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=24.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
....|+|.|++|+||||+++.+...+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999998873
No 164
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.19 E-value=0.0034 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
...+|+|.|+.|+||||+++.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 5689999999999999999998875
No 165
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.19 E-value=0.0033 Score=52.68 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=23.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|+|++|+||||+++.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998765
No 166
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.18 E-value=0.0029 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
.+++|.|++|+|||||++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999764
No 167
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.18 E-value=0.0021 Score=52.00 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=22.1
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..|+|.|++|+||||+|+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999887
No 168
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.17 E-value=0.0026 Score=54.18 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...|+|.|++|+||||+|+.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 169
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.17 E-value=0.013 Score=50.02 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=30.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhccc---CCcceEEEEEecC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTR---HNFYLVILVKAVD 99 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~ 99 (339)
...++.|.|++|+|||||+..++....... ..-..++|+....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 458999999999999999999988531100 0124677876553
No 170
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.17 E-value=0.002 Score=53.14 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=21.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++++|.|++|+|||||++.++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998776
No 171
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.16 E-value=0.0026 Score=54.00 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|.|++|+||||+++.++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999887
No 172
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.15 E-value=0.0029 Score=53.61 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999887
No 173
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.15 E-value=0.0028 Score=54.69 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.+++|.|++|+|||||++.+++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999776
No 174
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.14 E-value=0.0028 Score=52.97 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+.++|+|++|+|||||++.++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998775
No 175
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.14 E-value=0.0029 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+|+|+|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 176
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.14 E-value=0.0056 Score=55.18 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=31.8
Q ss_pred cchhHHHHHHHHHhhcC---CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 39 KGMESILDEVWECFEDD---FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 39 vGR~~~~~~l~~~l~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|-...+..+...+... ..+.+++|.|++|+|||||++.+....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44445555555555442 355699999999999999999988776
No 177
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.12 E-value=0.014 Score=52.18 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=24.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...++.|+|++|+||||++..++..+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 457999999999999999999998873
No 178
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.09 E-value=0.0033 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=21.5
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.|+|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999886
No 179
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.09 E-value=0.0023 Score=53.43 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=21.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.++|+|++|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999999999998765
No 180
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.08 E-value=0.0033 Score=52.96 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.0
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 181
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.08 E-value=0.004 Score=57.45 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=54.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEE-EEEec-------------C---CCCHHHHHHHHHHHhcCCce
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVI-LVKAV-------------D---NKNQQGRAEEIFQRLSQRRF 119 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~-wv~~~-------------~---~~~~~~~~~~l~~~l~~k~~ 119 (339)
....++|+|+.|+||||+++.++...... ..+.+ ++... + ..+.......+...+...+-
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~---~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd 211 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT---KSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 211 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH---SCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC---CCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcC
Confidence 45899999999999999999988866311 01122 22110 0 00112334566777777788
Q ss_pred EEEEecCCCCCCcccccCCCCCCceEEEeCCCh
Q 039134 120 ALLLDDLRGPINLDEAGVPDQNGSKIVFTTIME 152 (339)
Q Consensus 120 LlvlDdv~~~~~l~~l~~~~~~~~~ilvTsR~~ 152 (339)
+|++|...+.+.+.........|..++.|+-..
T Consensus 212 ~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 212 VIFVGEMRDLETVETALRAAETGHLVFGTLHTN 244 (372)
T ss_dssp EEEESCCCSHHHHHHHHHHHTTTCEEEECCCCC
T ss_pred EEEECCCCCHHHHHHHHHHHhcCCEEEEEECcc
Confidence 999998864443322211123355566666543
No 182
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.08 E-value=0.0033 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.6
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|+|.|++|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999977
No 183
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.08 E-value=0.0048 Score=52.20 Aligned_cols=26 Identities=27% Similarity=0.338 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999998744
No 184
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.06 E-value=0.0034 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...|+|.|++|+||||+++.+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 185
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.05 E-value=0.0035 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.7
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987
No 186
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.05 E-value=0.0036 Score=51.40 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|+|++|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998776
No 187
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.04 E-value=0.018 Score=65.24 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=46.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHh---------------cCCceEEEE
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRL---------------SQRRFALLL 123 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l---------------~~k~~Llvl 123 (339)
+-++++|++|+|||++|+.+.... ..+. ...+..+...+.......+...+ .++++++.+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~----~~~~-~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS----SLYD-VVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC----SSCE-EEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC----CCCc-eEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 788999999999999998887765 2332 44566666666666666666543 246688889
Q ss_pred ecCCCC
Q 039134 124 DDLRGP 129 (339)
Q Consensus 124 Ddv~~~ 129 (339)
||++..
T Consensus 1343 DEinmp 1348 (2695)
T 4akg_A 1343 DEINLP 1348 (2695)
T ss_dssp ETTTCS
T ss_pred cccccc
Confidence 997543
No 188
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.03 E-value=0.0067 Score=56.83 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|+|++|+||||+|+.++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 56899999999999999999998876
No 189
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.01 E-value=0.022 Score=51.19 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=30.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+.++|+|.|-|||||||.+..++..+. +..+ -++-+++.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA--~~Gk-kVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGK-RVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTC-CEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHH--HCCC-eEEEEecC
Confidence 679999999999999999998888875 2222 35566655
No 190
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.00 E-value=0.0036 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.|+|.|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 191
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.00 E-value=0.0046 Score=49.76 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|+.|+|||||++.++...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45899999999999999999998875
No 192
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.98 E-value=0.004 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..|+|+|++|+||||+++.++. .
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C
Confidence 3689999999999999999987 5
No 193
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.97 E-value=0.0045 Score=53.69 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|.|++|+||||+|+.+...+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998876
No 194
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.95 E-value=0.0049 Score=51.84 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=23.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|.|++|+||||+++.+...+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999999999876
No 195
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.95 E-value=0.0038 Score=52.38 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||++.++...
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34799999999999999999988775
No 196
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.93 E-value=0.0069 Score=51.79 Aligned_cols=39 Identities=23% Similarity=0.079 Sum_probs=29.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
...++.|.|++|+|||||+.+++.... ..-..++|+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL---KMGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcc
Confidence 457999999999999999998887663 122356776643
No 197
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.93 E-value=0.0052 Score=50.12 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|+|+.|+||||+++.+...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999876
No 198
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.91 E-value=0.0044 Score=53.85 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|.|++|+||||+++.++..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34799999999999999999999876
No 199
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.91 E-value=0.0053 Score=52.97 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=23.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|+.|+|||||++.++...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999999988865
No 200
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.89 E-value=0.0041 Score=52.91 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=23.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45899999999999999999988765
No 201
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.88 E-value=0.0046 Score=51.68 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNS 80 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~ 80 (339)
.+|+|+|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 202
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.86 E-value=0.0035 Score=53.19 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=22.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|++|+|||||++.++...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34789999999999999999988765
No 203
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.86 E-value=0.043 Score=51.45 Aligned_cols=27 Identities=37% Similarity=0.364 Sum_probs=24.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...++.++|++|+||||++..++..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999998873
No 204
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.83 E-value=0.022 Score=51.26 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=35.1
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhccc--CC-cceEEEEEecCCCCHHHHH
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTR--HN-FYLVILVKAVDNKNQQGRA 107 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~-f~~~~wv~~~~~~~~~~~~ 107 (339)
+...++.|+|++|+|||+||.+++....... .. -..++|++.....+.+...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~ 159 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE 159 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH
Confidence 3457999999999999999999998752110 00 2467888766544444433
No 205
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.82 E-value=0.036 Score=52.24 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=30.8
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
....++.|.|++|+|||+||..++.... .. .-..++|++..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a-~~-~g~~vl~~slE 238 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAA-LK-EGVGVGIYSLE 238 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHH-HT-TCCCEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH-Hh-CCCeEEEEECC
Confidence 3557999999999999999999998874 11 12357777654
No 206
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.82 E-value=0.003 Score=52.98 Aligned_cols=23 Identities=39% Similarity=0.743 Sum_probs=21.7
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|+|.|++|+||||+++.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 207
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.80 E-value=0.047 Score=51.27 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=24.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.+.+|.++|++|+||||++..++..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998874
No 208
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.76 E-value=0.0094 Score=52.08 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 43 SILDEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 43 ~~~~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....-+..++... +....++|+||+|+|||.+|..+++..
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3444566666654 446789999999999999999999864
No 209
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.75 E-value=0.0059 Score=54.88 Aligned_cols=27 Identities=26% Similarity=0.171 Sum_probs=24.3
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....+++|.|++|+|||||++.++...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 356899999999999999999998876
No 210
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.74 E-value=0.036 Score=49.70 Aligned_cols=50 Identities=12% Similarity=0.160 Sum_probs=35.4
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHH
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEI 110 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 110 (339)
....++.|.|.+|+||||||.+++.... . .. ..++|++.. .+.++....+
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a-~-~g-~~vl~~slE--~s~~~l~~R~ 115 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMS-D-ND-DVVNLHSLE--MGKKENIKRL 115 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHH-T-TT-CEEEEEESS--SCHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH-H-cC-CeEEEEECC--CCHHHHHHHH
Confidence 3558999999999999999999998763 1 22 567787754 3444444333
No 211
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.73 E-value=0.0061 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=21.1
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999876
No 212
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.72 E-value=0.0061 Score=51.51 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...|+|.|++|+||||+|+.++..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999887
No 213
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.72 E-value=0.0061 Score=52.14 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|.|++|+||||+|+.++..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999987
No 214
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.72 E-value=0.0083 Score=51.54 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=27.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||.+.++--. ....+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD----KPTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC----CCCceEEEE
Confidence 45899999999999999999888765 334555655
No 215
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.70 E-value=0.0046 Score=53.06 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNS 80 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~ 80 (339)
...+++|.|++|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 458999999999999999998884
No 216
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.69 E-value=0.0061 Score=50.69 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|+|+.|+||||+++.+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56899999999999999999998874
No 217
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.69 E-value=0.0061 Score=49.55 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+++.|.|++|+|||||+..++..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999999887
No 218
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.67 E-value=0.0061 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.67 E-value=0.013 Score=59.27 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=38.7
Q ss_pred ccccchhHHHHHHHHHhhcC--------CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 36 SVKKGMESILDEVWECFEDD--------FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++|.+..++.+...+... .....++++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45799999999888877531 133589999999999999999999887
No 220
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.66 E-value=0.0037 Score=61.35 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=36.2
Q ss_pred cccccchhHHHHHHHHHhhcCCCcE-----------EEEEEeCCCchHHHHHHHHHhhhh
Q 039134 35 LSVKKGMESILDEVWECFEDDFPMR-----------IICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 35 ~~~~vGR~~~~~~l~~~l~~~~~~~-----------~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.+.++|.+.....+...+..+ ..+ -++|+|++|+|||+||+.+++...
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g-~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGG-VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCC-CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS
T ss_pred cchhcChHHHHHHHHHHHhCC-CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC
Confidence 356699998776665555544 211 689999999999999999988763
No 221
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.63 E-value=0.007 Score=54.75 Aligned_cols=26 Identities=27% Similarity=0.680 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|.||.|+|||||+..++..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34799999999999999999999987
No 222
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.61 E-value=0.0079 Score=50.72 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNS 80 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~ 80 (339)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 223
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.60 E-value=0.0065 Score=52.14 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=23.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++.|.|++|+||||+++.++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999887
No 224
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.59 E-value=0.016 Score=51.79 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|+.|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998875
No 225
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.59 E-value=0.042 Score=49.27 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=35.8
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcc-----------cCCc--ceEEEEEecCCCCHHHHHHH
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDT-----------RHNF--YLVILVKAVDNKNQQGRAEE 109 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----------~~~f--~~~~wv~~~~~~~~~~~~~~ 109 (339)
+...++.|+|++|+|||+||.+++...... .+.. ..++|++.....+.+.....
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 356899999999999999999998763110 1111 46788876654444444433
No 226
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.59 E-value=0.023 Score=62.58 Aligned_cols=69 Identities=20% Similarity=0.171 Sum_probs=45.9
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---------------------CCCCHHHHHHHHHHHh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---------------------DNKNQQGRAEEIFQRL 114 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---------------------~~~~~~~~~~~l~~~l 114 (339)
++.+.+.|+|++|+|||+||.+++.... +.. ..+.|+... .....+.....+++..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~--~~G-~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ--REG-KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH--TTT-CCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcC-CcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 3568999999999999999999988763 222 234555443 1222334444444443
Q ss_pred -cCCceEEEEecCC
Q 039134 115 -SQRRFALLLDDLR 127 (339)
Q Consensus 115 -~~k~~LlvlDdv~ 127 (339)
+.+..+||+|.+.
T Consensus 1502 r~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHTCCSEEEESCGG
T ss_pred hcCCCCEEEEcChh
Confidence 3578899999995
No 227
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.58 E-value=0.0077 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=21.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHH
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFN 79 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~ 79 (339)
.+.+|+|+|++|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999998
No 228
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.56 E-value=0.008 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=23.1
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|+|.||+|+|||+||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4789999999999999999999886
No 229
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.55 E-value=0.0045 Score=52.81 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=17.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHH-hhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFN-SKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~-~~~ 82 (339)
...+++|+|+.|+|||||++.++ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34789999999999999999998 654
No 230
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.55 E-value=0.04 Score=51.99 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=33.5
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 47 EVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 47 ~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
+.++.|..-.+.+.++|.|.+|+|||+|+..++++.. +.+-+.++++-+.
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iG 191 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVG 191 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEES
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECC
Confidence 3444454422568899999999999999999998753 1223445555444
No 231
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.55 E-value=0.0074 Score=50.21 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+|+|.|++|+||||+++.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999887
No 232
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.54 E-value=0.016 Score=54.95 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=32.2
Q ss_pred chhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 40 GMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 40 GR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+....+..+...+..+ .+.++|.|++|+|||+++..++..+.
T Consensus 29 ~Q~~av~~~~~~i~~~--~~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEK--KHHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHHHHHHHHHSS--SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--CCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3445555666666665 24899999999999999999998874
No 233
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.54 E-value=0.067 Score=50.19 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcC--------CCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 43 SILDEVWECFEDD--------FPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 43 ~~~~~l~~~l~~~--------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...+++.+.+... ..+++|.++|.+|+||||++..++..+.
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445566666431 2468999999999999999999998884
No 234
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.47 E-value=0.0079 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=23.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|+|+|++|+||||||..++..+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999999887
No 235
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.46 E-value=0.011 Score=51.59 Aligned_cols=35 Identities=31% Similarity=0.300 Sum_probs=27.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||.+.++--. ....+.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE----KPSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 45899999999999999999988765 233455554
No 236
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.46 E-value=0.0082 Score=52.12 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=23.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...|+|+|++|+||||+++.++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999999877
No 237
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.46 E-value=0.01 Score=50.58 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=26.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||.+.++--. ....+.+++
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 63 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD----APTEGKVFL 63 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 45799999999999999999888665 233455554
No 238
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.44 E-value=0.0094 Score=50.21 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=27.4
Q ss_pred ccchhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 38 KKGMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
-+|....++. +..+ .+++|.|+.|+|||||++.++-.
T Consensus 9 ~~g~~~~l~~----i~~G---e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDA----IDTN---TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHH----HHHC---SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CHhHHHHHHh----ccCC---CEEEEECCCCCCHHHHHHHHhcC
Confidence 3555444444 3444 78999999999999999988765
No 239
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.44 E-value=0.0087 Score=54.26 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=22.6
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+|+|.|++|+||||||..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999887
No 240
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.44 E-value=0.012 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.2
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+. .+++|.|+.|+|||||.+.++--.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 36 899999999999999999988765
No 241
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.41 E-value=0.043 Score=51.36 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...++.|+|++|+||||++..++..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998874
No 242
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.41 E-value=0.033 Score=52.68 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=30.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
...++.|.|++|+|||||+..++.... ... -..++|+...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~-~~~-g~~Vl~~s~E 241 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVA-TKT-NENVAIFSLE 241 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHH-HHS-SCCEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HhC-CCcEEEEECC
Confidence 457999999999999999999998873 111 1257777644
No 243
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.41 E-value=0.0099 Score=53.11 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.||.|+|||+||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45789999999999999999999886
No 244
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.40 E-value=0.0086 Score=49.92 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...|+|.|++|+||||||..++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4779999999999999999998876
No 245
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.39 E-value=0.0068 Score=49.42 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+++|+|++|+|||||++.+...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999887
No 246
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.38 E-value=0.0013 Score=66.87 Aligned_cols=86 Identities=24% Similarity=0.388 Sum_probs=54.0
Q ss_pred cccchhHHHHHHHHHhhcC------------CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC-----
Q 039134 37 VKKGMESILDEVWECFEDD------------FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD----- 99 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~----- 99 (339)
.++|.+...+.|.+.+.-. .....++|+|++|+|||+||+.++.... ..|- .+..+.
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~---~~~i---~v~~~~l~~~~ 551 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFI---SIKGPELLTMW 551 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT---CCCC---CCCCSSSTTCC
T ss_pred ccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC---CCEE---EEechHhhhhh
Confidence 4588888888888776521 2446789999999999999999999873 2221 111111
Q ss_pred CCCHHHHHHHHHHHh-cCCceEEEEecCCC
Q 039134 100 NKNQQGRAEEIFQRL-SQRRFALLLDDLRG 128 (339)
Q Consensus 100 ~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~ 128 (339)
.-........+++.. ...+.++++|+++.
T Consensus 552 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~ 581 (806)
T 1ypw_A 552 FGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp TTTSSHHHHHHHHHHHHHCSBCCCCSSHHH
T ss_pred cCccHHHHHHHHHHHHhcCCeEEEEEChhh
Confidence 001122333344433 33568999999853
No 247
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.36 E-value=0.011 Score=50.47 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=24.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
....|+|.|++|+||||+++.+...+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 458999999999999999999999983
No 248
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.35 E-value=0.0093 Score=52.92 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.7
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+|+|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 689999999999999999998853
No 249
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.35 E-value=0.0089 Score=53.50 Aligned_cols=26 Identities=35% Similarity=0.632 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|++|+||||++..++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999999887
No 250
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.34 E-value=0.013 Score=51.71 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=27.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||++.++--. ....+.+++
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~----~p~~G~I~~ 67 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL----KPSSGRILF 67 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC----CCCCeEEEE
Confidence 45799999999999999999888765 334555554
No 251
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.33 E-value=0.017 Score=55.42 Aligned_cols=48 Identities=15% Similarity=-0.006 Sum_probs=36.7
Q ss_pred ccccchhHHHHHHHHHhhc-CCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 36 SVKKGMESILDEVWECFED-DFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 36 ~~~vGR~~~~~~l~~~l~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
|..+.|.+..+.+.+.... .....+|.|.|++|+||||+|+.++.++.
T Consensus 372 P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred CccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 4456676666667666532 12458899999999999999999999993
No 252
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.33 E-value=0.0095 Score=50.32 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||+..++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44789999999999999999999765
No 253
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.31 E-value=0.014 Score=51.12 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=27.8
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
+...+++|.|+.|+|||||++.++--. ....+.+++
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 83 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE----DFDEGEIII 83 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC----CCCCcEEEE
Confidence 356899999999999999999988765 233455554
No 254
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.28 E-value=0.014 Score=51.23 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=27.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||++.++--. ....+.+++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~p~~G~I~~ 78 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY----QPTGGKVLL 78 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCCEEEE
Confidence 55899999999999999999988776 333455554
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.26 E-value=0.01 Score=48.48 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=23.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++++|.|++|+|||||+..+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999876
No 256
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.26 E-value=0.012 Score=52.65 Aligned_cols=26 Identities=35% Similarity=0.499 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|+.|+||||++..++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 257
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.25 E-value=0.023 Score=54.06 Aligned_cols=27 Identities=37% Similarity=0.536 Sum_probs=24.2
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....+++|+|++|+|||||++.++..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 356899999999999999999998876
No 258
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.24 E-value=0.0094 Score=51.29 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|+.|+|||||++.++--.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999988765
No 259
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.23 E-value=0.081 Score=47.00 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=23.4
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..++++.|++|+||||++..++..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998873
No 260
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.22 E-value=0.035 Score=57.12 Aligned_cols=152 Identities=15% Similarity=0.097 Sum_probs=72.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh-cccCCcc--e--------EEEEEecC------CC-CHHHHHHHHHHHh--cC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS-DTRHNFY--L--------VILVKAVD------NK-NQQGRAEEIFQRL--SQ 116 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~f~--~--------~~wv~~~~------~~-~~~~~~~~l~~~l--~~ 116 (339)
...+++|+|+.|.||||+.+.++--.. ...+.|- . .++-.++. .. ........+...+ ..
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~ 740 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSAT 740 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhcc
Confidence 458999999999999999998832110 0001221 0 11111111 11 1111122233333 56
Q ss_pred CceEEEEecCCCCCC-cc------cccCC--CCCCceEEEeCCChHHHhhcCCC---ceEEecCC-CCcc----CccCCC
Q 039134 117 RRFALLLDDLRGPIN-LD------EAGVP--DQNGSKIVFTTIMEDACNTMGDQ---IKFKVDYL-RRDD----DVLNFH 179 (339)
Q Consensus 117 k~~LlvlDdv~~~~~-l~------~l~~~--~~~~~~ilvTsR~~~~~~~~~~~---~~~~l~~L-~~~~----~~~~~~ 179 (339)
++-|+++|..-.-.+ .+ .+... ...++.+|++|.+..+....... .-.++... +.++ ......
T Consensus 741 ~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~y~l~~G 820 (934)
T 3thx_A 741 KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKG 820 (934)
T ss_dssp TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEEEEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEEEEEEEeeC
Confidence 889999999854322 11 11111 23588899999886654332211 11122111 1111 011111
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 039134 180 PDILELAETVADLCRGLPLAHITIGRAMAN 209 (339)
Q Consensus 180 ~~~~~~~~~i~~~~~G~Plal~~~~~~L~~ 209 (339)
......+-.+++.+ |+|-.+..-|..+..
T Consensus 821 ~~~~S~gi~vA~~~-glp~~vi~~A~~~~~ 849 (934)
T 3thx_A 821 VCDQSFGIHVAELA-NFPKHVIECAKQKAL 849 (934)
T ss_dssp CCCCCCHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 11223455565554 688888777765543
No 261
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.22 E-value=0.013 Score=50.75 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=27.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||++.++--. ....+.+++
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~I~i 68 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY----IPENGQVLI 68 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 45799999999999999999988776 333455655
No 262
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.21 E-value=0.023 Score=55.09 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=31.5
Q ss_pred ccchhHHHHHHHHHhhc-CCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 38 KKGMESILDEVWECFED-DFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 38 ~vGR~~~~~~l~~~l~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.+......+...... -....+++|+|++|+|||||++.++..+
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 34454444444443311 1145899999999999999999999987
No 263
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.20 E-value=0.0051 Score=54.69 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=20.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+..+|+|.|++|+||||+|+.+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998865
No 264
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.19 E-value=0.013 Score=51.25 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=52.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec------C-----------CCCHHHHHHHHHHHhcCCce
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV------D-----------NKNQQGRAEEIFQRLSQRRF 119 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~------~-----------~~~~~~~~~~l~~~l~~k~~ 119 (339)
...+++|+|+.|+|||||++.++.... . .+.+.+++... . ..+.......+.+.+...+-
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~-~--~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ 100 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN-Q--TKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 100 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH-H--HCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC-C--CCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 458999999999999999999887652 1 11222222111 0 00112234456666666777
Q ss_pred EEEEecCCCCCCcccccCCCCCCceEEEeCCCh
Q 039134 120 ALLLDDLRGPINLDEAGVPDQNGSKIVFTTIME 152 (339)
Q Consensus 120 LlvlDdv~~~~~l~~l~~~~~~~~~ilvTsR~~ 152 (339)
+|++|...+.+....+......|..+++|+-..
T Consensus 101 illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~ 133 (261)
T 2eyu_A 101 VIFVGEMRDLETVETALRAAETGHLVFGTLHTN 133 (261)
T ss_dssp EEEESCCCSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred EEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcc
Confidence 888888863322222111122355566666554
No 265
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.19 E-value=0.016 Score=50.49 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=27.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||.+.++--. ....+.+++
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 74 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI----KPSSGIVTV 74 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 45799999999999999999988765 233455554
No 266
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.18 E-value=0.012 Score=50.87 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|+.|+|||||.+.++--.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55899999999999999999988765
No 267
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.16 E-value=0.014 Score=50.33 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=27.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||.+.++--. ....+.+++
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 65 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV----RAQKGKIIF 65 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEE
Confidence 45799999999999999999988765 233455554
No 268
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.15 E-value=0.012 Score=52.45 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|++|+||||++..++..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999877
No 269
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.15 E-value=0.013 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=23.2
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+..|+|.|..|+||||+++.+++.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999987
No 270
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.15 E-value=0.0096 Score=49.36 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=21.6
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+++|+|+.|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998876
No 271
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.14 E-value=0.014 Score=49.87 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|+.|+|||||.+.++--.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999988765
No 272
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.13 E-value=0.053 Score=48.15 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...+++|+|++|+||||++..++....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998873
No 273
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.13 E-value=0.02 Score=56.70 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHH
Q 039134 43 SILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIF 111 (339)
Q Consensus 43 ~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 111 (339)
...+.+...|... .+.+|+||||.|||+.+.++...... .. ..+.++......++.+.+.+.
T Consensus 193 ~Q~~AV~~al~~~---~~~lI~GPPGTGKT~ti~~~I~~l~~--~~--~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 193 SQKEAVLFALSQK---ELAIIHGPPGTGKTTTVVEIILQAVK--QG--LKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHCS---SEEEEECCTTSCHHHHHHHHHHHHHH--TT--CCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC---CceEEECCCCCCHHHHHHHHHHHHHh--CC--CeEEEEcCchHHHHHHHHHHH
Confidence 3445566666544 57899999999999766665555421 22 246666666666666666654
No 274
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.12 E-value=0.015 Score=50.96 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=27.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||++.++--. ....+.+++
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~I~~ 70 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL----SPSHGECHL 70 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS----CCSSCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEE
Confidence 45899999999999999999998766 233455554
No 275
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.11 E-value=0.017 Score=50.35 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=27.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||.+.++--. ....+.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~ 66 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL----KADEGRVYF 66 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEE
Confidence 45799999999999999999988765 233455554
No 276
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.10 E-value=0.012 Score=49.77 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=27.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||.+.++--. ....+.+++
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 68 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL----KPLKGEIIY 68 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEE
Confidence 44789999999999999999988765 233455554
No 277
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.10 E-value=0.016 Score=51.85 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=27.8
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
+...+++|+|+.|+|||||++.++.-. ....+.+++
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~----~p~~G~I~i 113 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY----DISSGCIRI 113 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS----CCSEEEEEE
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC----CCCCcEEEE
Confidence 356899999999999999999888766 333455544
No 278
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.09 E-value=0.018 Score=50.48 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=27.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||.+.++--. ....+.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~----~p~~G~I~~ 66 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI----EPTSGDVLY 66 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC----CCCCcEEEE
Confidence 45799999999999999999988765 334555655
No 279
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.09 E-value=0.048 Score=51.67 Aligned_cols=49 Identities=20% Similarity=0.208 Sum_probs=34.1
Q ss_pred HHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 48 VWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 48 l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
.++.|..-.+.+.++|.|.+|+|||+|+..++++.. +.+-+.++++-+.
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iG 203 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVG 203 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEES
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcc
Confidence 344454423568899999999999999999998753 2233555666554
No 280
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.09 E-value=0.014 Score=52.71 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=24.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|++|+||||++..++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999877
No 281
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.07 E-value=0.018 Score=52.46 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=24.2
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...++.|+|++|+|||||+..++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999998875
No 282
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.05 E-value=0.031 Score=51.05 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=24.3
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...+|+|+|.+|+|||||+..++..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998776
No 283
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.04 E-value=0.027 Score=47.58 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=26.4
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcce
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYL 91 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~ 91 (339)
...|+|.|+.|+||||+++.+.+.+. ...+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCc
Confidence 47899999999999999999999884 234554
No 284
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.032 Score=45.55 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999988764
No 285
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.03 E-value=0.013 Score=51.97 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||+..++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999998877
No 286
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.02 E-value=0.021 Score=48.62 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=24.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcce
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYL 91 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~ 91 (339)
.-.|++.|.||+||||+|..++.... ...++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~V 37 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQL--RQGVRV 37 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH--HCCCCE
Confidence 34588999999999999999998874 334453
No 287
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.01 E-value=0.013 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
...+++|.|+.|+|||||++.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5579999999999999999998875
No 288
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.01 E-value=0.024 Score=52.24 Aligned_cols=27 Identities=26% Similarity=0.133 Sum_probs=23.9
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+....++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356799999999999999999999765
No 289
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.97 E-value=0.012 Score=51.64 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++.|.|++|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34899999999999999999998765
No 290
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.94 E-value=0.048 Score=60.11 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=48.2
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---------------------CCCCHHHHHHHHHHHh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---------------------DNKNQQGRAEEIFQRL 114 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---------------------~~~~~~~~~~~l~~~l 114 (339)
+...++.|.|++|+||||||.+++.... ..-..++|++.. ...+.++....+....
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv 457 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 457 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHHHHHcCCCHHHeEEeCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999998874 222356777654 2234444555444333
Q ss_pred -cCCceEEEEecCCC
Q 039134 115 -SQRRFALLLDDLRG 128 (339)
Q Consensus 115 -~~k~~LlvlDdv~~ 128 (339)
+...-++|+|-+..
T Consensus 458 ~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 458 RSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHTCCSEEEESCGGG
T ss_pred HhcCCcEEEECCHHH
Confidence 35677999999853
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.94 E-value=0.013 Score=51.20 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=27.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|+|+.|+|||||++.++--. .. .+.+++
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~-~G~I~i 78 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY----DA-EGDIKI 78 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CC-EEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC----CC-CeEEEE
Confidence 45799999999999999999988765 22 455554
No 292
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.94 E-value=0.015 Score=47.82 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.1
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.-.++|.|++|+|||||++.++...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998764
No 293
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.92 E-value=0.014 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4479999999999999999998875
No 294
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.91 E-value=0.047 Score=59.38 Aligned_cols=71 Identities=18% Similarity=0.111 Sum_probs=48.2
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---------------------CCCCHHHHHHHHHHHh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---------------------DNKNQQGRAEEIFQRL 114 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---------------------~~~~~~~~~~~l~~~l 114 (339)
+...++.|.|++|+||||||.+++..... .-..++|++.. ...+.++....+....
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv 457 (1706)
T 3cmw_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 457 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999887741 12346666554 2233444444444433
Q ss_pred -cCCceEEEEecCCCC
Q 039134 115 -SQRRFALLLDDLRGP 129 (339)
Q Consensus 115 -~~k~~LlvlDdv~~~ 129 (339)
+.+.-++|+|-+...
T Consensus 458 ~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 458 RSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHTCCSEEEESCSTTC
T ss_pred HhcCCCEEEECCHHHh
Confidence 356779999998644
No 295
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.90 E-value=0.017 Score=52.91 Aligned_cols=26 Identities=35% Similarity=0.499 Sum_probs=23.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|+.|+||||++..++..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999999887
No 296
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.90 E-value=0.017 Score=53.48 Aligned_cols=25 Identities=36% Similarity=0.749 Sum_probs=23.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|+|.|++|+||||||..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3689999999999999999999887
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.89 E-value=0.013 Score=52.33 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....++|+|++|+|||||++.++.-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 56899999999999999999988764
No 298
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.89 E-value=0.02 Score=50.47 Aligned_cols=35 Identities=31% Similarity=0.279 Sum_probs=27.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
...+++|.|+.|+|||||.+.++--. ....+.+++
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 80 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE----PATSGTVNL 80 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC----CCCCeEEEE
Confidence 45799999999999999999988765 233455554
No 299
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.89 E-value=0.048 Score=58.47 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.1
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+....++|+|+.|+|||||++.+....
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 356899999999999999999998876
No 300
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.88 E-value=0.016 Score=49.50 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 55789999999999999999999876
No 301
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.87 E-value=0.019 Score=46.70 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.2
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++|.|++|+||||+|..+..+-
T Consensus 16 G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 4789999999999999999998863
No 302
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.82 E-value=0.018 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.|+|.|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998753
No 303
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.81 E-value=0.018 Score=47.35 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+++|+|+.|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999998777765
No 304
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.78 E-value=0.021 Score=49.41 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=24.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++++.|.+|+||||++..++..+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999887
No 305
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.76 E-value=0.011 Score=51.54 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...|+|.|+.|+||||+++.+++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56899999999999999999998887
No 306
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.74 E-value=0.014 Score=47.62 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
-|+|+|.+|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 307
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.74 E-value=0.015 Score=49.65 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
...+++|.|+.|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 5689999999999999999988765
No 308
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.74 E-value=0.027 Score=50.67 Aligned_cols=27 Identities=37% Similarity=0.625 Sum_probs=24.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...++.|+|++|+||||++..++..+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998873
No 309
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.71 E-value=0.02 Score=45.66 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.2
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
...++|.|.+|+|||||...+...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
No 310
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.71 E-value=0.028 Score=51.40 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++--.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45799999999999999999988755
No 311
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.70 E-value=0.015 Score=50.35 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=23.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|+.|+|||||.+.++--.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44789999999999999999988776
No 312
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.68 E-value=0.016 Score=47.82 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=21.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.-.++|.|++|+|||||.+.++...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998763
No 313
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.67 E-value=0.021 Score=53.08 Aligned_cols=44 Identities=14% Similarity=0.030 Sum_probs=29.7
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhccc--C-CcceEEEEEecC
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTR--H-NFYLVILVKAVD 99 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~-~f~~~~wv~~~~ 99 (339)
....++.|.|++|+|||||+..++-...... . .-..++|+....
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 3558999999999999999998764431100 1 224577776543
No 314
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.66 E-value=0.051 Score=46.60 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=35.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRL 114 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 114 (339)
....|+|.|++|+||||+++.+.+.+. ..++..+...... ......+.++..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~rep---~~t~~g~~ir~~l 78 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRTREP---GGTLLAEKLRALV 78 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEEESS---CSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeeecCC---CCCHHHHHHHHHH
Confidence 347899999999999999999999884 2345534433322 1223345555555
No 315
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.64 E-value=0.014 Score=50.77 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|+.|+|||||.+.++--.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44789999999999999999988765
No 316
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.58 E-value=0.049 Score=51.61 Aligned_cols=33 Identities=15% Similarity=0.039 Sum_probs=23.1
Q ss_pred HHHhhcCCCcEEEEEEeCCCchHHHHHH-HHHhh
Q 039134 49 WECFEDDFPMRIICLYGVSGVGKTTLLV-NFNSK 81 (339)
Q Consensus 49 ~~~l~~~~~~~~v~I~G~~GiGKTtLa~-~~~~~ 81 (339)
++.|..-.+.+.++|.|.+|+|||+|+. .+++.
T Consensus 153 ID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 153 VDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp HHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred eccccccccCCEEEeecCCCCCcchHHHHHHHhh
Confidence 3444432255788999999999999974 55554
No 317
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.57 E-value=0.06 Score=45.38 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...|+|.|+.|+||||+++.+.+.+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999884
No 318
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.55 E-value=0.051 Score=50.78 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|+.|+||||+.+.++...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 56899999999999999999998876
No 319
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.55 E-value=0.037 Score=52.62 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=24.2
Q ss_pred HHHHhhcCCCcEEEEEEeCCCchHHHHHH-HHHhhh
Q 039134 48 VWECFEDDFPMRIICLYGVSGVGKTTLLV-NFNSKF 82 (339)
Q Consensus 48 l~~~l~~~~~~~~v~I~G~~GiGKTtLa~-~~~~~~ 82 (339)
.++.+..-.+.+.++|.|.+|+|||+||. .+++..
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh
Confidence 33444431255888999999999999965 555553
No 320
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.53 E-value=0.036 Score=49.31 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=30.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD 99 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 99 (339)
..++|+|+|-||+||||+|..++..+.+ ... .++.++...
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~--~G~-~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSI--LGK-RVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTC-CEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHH--CCC-eEEEEeCCC
Confidence 6688888899999999999999988852 222 466677663
No 321
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.53 E-value=0.02 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
-.|++.|.+|+|||||+..+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998653
No 322
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.52 E-value=0.037 Score=51.97 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.+.++|.|.+|+|||+|+.++++..
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~ 175 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQA 175 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHH
Confidence 45668999999999999999988876
No 323
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.51 E-value=0.018 Score=51.78 Aligned_cols=26 Identities=38% Similarity=0.557 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999999998653
No 324
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.50 E-value=0.028 Score=47.84 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=24.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
....|+|.|+.|+||||+++.+.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999999999884
No 325
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.49 E-value=0.034 Score=50.91 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=22.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++|+|+.|+|||||++.++...
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4789999999999999999998876
No 326
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.48 E-value=0.021 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++|+|++|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999988765
No 327
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.47 E-value=0.025 Score=45.92 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
...|+|.|.+|+|||||...++..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999874
No 328
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.45 E-value=0.04 Score=52.27 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=24.6
Q ss_pred HHHHhhcCCCcEEEEEEeCCCchHHHHHH-HHHhhh
Q 039134 48 VWECFEDDFPMRIICLYGVSGVGKTTLLV-NFNSKF 82 (339)
Q Consensus 48 l~~~l~~~~~~~~v~I~G~~GiGKTtLa~-~~~~~~ 82 (339)
.++.+..-.+.+.++|.|.+|+|||+||. .+++..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh
Confidence 34444442356888999999999999965 555553
No 329
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.45 E-value=0.031 Score=50.86 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++--.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 45799999999999999999988654
No 330
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.45 E-value=0.025 Score=46.92 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 40 GMESILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 40 GR~~~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+++...+.+.+..... ..-.|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~m~~~~~~~-~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQG-QAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcC-CeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3344444444444443 45678999999999999999888654
No 331
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.44 E-value=0.042 Score=46.01 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=25.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCCcceE
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLV 92 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~ 92 (339)
..|+|-|+.|+||||+++.+++.+. ..++.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~---~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV---KDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT---TTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH---CCCCEE
Confidence 5789999999999999999999984 355533
No 332
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.43 E-value=0.021 Score=50.67 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.5
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...+++|.|+.|+|||||.+.++--.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356799999999999999999988765
No 333
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.41 E-value=0.024 Score=46.15 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.+|+|+.|+|||||+..++--+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999987654
No 334
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.37 E-value=0.022 Score=45.14 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=21.6
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|.|.+|+|||||+..+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998753
No 335
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.33 E-value=0.036 Score=50.76 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=22.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45899999999999999999988654
No 336
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.32 E-value=0.036 Score=50.65 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45799999999999999999988654
No 337
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.31 E-value=0.021 Score=49.88 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.3
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
..+++|.|+.|+|||||.+.++--
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999988765
No 338
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.30 E-value=0.027 Score=45.16 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...|+|+|.+|+|||||+..+....
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45788999999999999999987653
No 339
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.29 E-value=0.032 Score=52.01 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 35699999999999999999998743
No 340
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.28 E-value=0.069 Score=57.25 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.8
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+....|+|+|+.|+|||||++.+..-.
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 356789999999999999999998776
No 341
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.27 E-value=0.066 Score=61.47 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHhc------------
Q 039134 48 VWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRLS------------ 115 (339)
Q Consensus 48 l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~------------ 115 (339)
+..++..+ .-|+++|++|+|||.++..+.... ..+.. +.+..+...+.......+...+.
T Consensus 1297 l~~ll~~~---~pvLL~GptGtGKT~li~~~L~~l----~~~~~-~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~ 1368 (3245)
T 3vkg_A 1297 LHAWLSEH---RPLILCGPPGSGKTMTLTSTLRAF----PDFEV-VSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLR 1368 (3245)
T ss_dssp HHHHHHTT---CCCEEESSTTSSHHHHHHHHGGGC----TTEEE-EEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEE
T ss_pred HHHHHHCC---CcEEEECCCCCCHHHHHHHHHHhC----CCCce-EEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccC
Q ss_pred ----CCceEEEEecCCCCC
Q 039134 116 ----QRRFALLLDDLRGPI 130 (339)
Q Consensus 116 ----~k~~LlvlDdv~~~~ 130 (339)
|+++++++||++...
T Consensus 1369 p~~~Gk~~VlFiDDiNmp~ 1387 (3245)
T 3vkg_A 1369 PTQLGKWLVVFCDEINLPS 1387 (3245)
T ss_dssp ESSTTCEEEEEETTTTCCC
T ss_pred CCcCCceEEEEecccCCCC
No 342
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.25 E-value=0.029 Score=54.06 Aligned_cols=26 Identities=19% Similarity=0.338 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+++|++|+||||+|+.++..+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 343
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.24 E-value=0.038 Score=50.77 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++--.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45899999999999999999988654
No 344
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.22 E-value=0.039 Score=50.50 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=22.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++--.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 55899999999999999999888654
No 345
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.20 E-value=0.028 Score=47.02 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|+|++|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45788999999999999999998764
No 346
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.19 E-value=0.025 Score=52.10 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++--.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45799999999999999999988755
No 347
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.19 E-value=0.039 Score=45.59 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
+...|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999988753
No 348
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.17 E-value=0.064 Score=43.54 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=25.9
Q ss_pred HHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 46 DEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 46 ~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
..+.+ +... ....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~-~~~~-~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNH-QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTT-SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCC-CccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 3333 4678899999999999999999854
No 349
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.15 E-value=0.026 Score=44.53 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|.|.+|+|||||+..+....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568999999999999999998653
No 350
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.15 E-value=0.022 Score=47.86 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=22.0
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+|+|.|+.|+||||+++.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998876
No 351
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.14 E-value=0.046 Score=53.27 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=23.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|.|.|++|+||||+|+.+...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999987
No 352
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.13 E-value=0.06 Score=52.15 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=33.2
Q ss_pred cccchhHHHHHHHHHhhc-CCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 37 VKKGMESILDEVWECFED-DFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 37 ~~vGR~~~~~~l~~~l~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.-+-|.+..+.+.+.... .....+|.++|++|+||||+|+.+...+
T Consensus 350 ~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 350 EWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 334555555555555522 1245789999999999999999999876
No 353
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.13 E-value=0.026 Score=44.45 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
--|+|.|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999988653
No 354
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.11 E-value=0.032 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++--.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45799999999999999999988654
No 355
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.09 E-value=0.027 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
--|+|.|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 357999999999999999988654
No 356
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.09 E-value=0.028 Score=45.63 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=22.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|+|.+|+|||||+..+....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998764
No 357
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.09 E-value=0.026 Score=51.50 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++--.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45899999999999999999988654
No 358
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.08 E-value=0.027 Score=45.89 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
-.|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 578999999999999999998654
No 359
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.08 E-value=0.027 Score=44.76 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.-.|+|.|.+|+|||||...+....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999988653
No 360
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.05 E-value=0.03 Score=51.25 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=23.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++|+|++|+|||||++.++...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998876
No 361
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.04 E-value=0.03 Score=45.71 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999999865
No 362
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.02 E-value=0.028 Score=44.53 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=21.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
--|+|.|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998764
No 363
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.02 E-value=0.03 Score=44.19 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
-|+|.|.+|+|||+|...+....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997653
No 364
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.01 E-value=0.044 Score=50.41 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++--.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45789999999999999999988654
No 365
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.00 E-value=0.24 Score=47.69 Aligned_cols=35 Identities=20% Similarity=0.079 Sum_probs=27.4
Q ss_pred HHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 48 VWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 48 l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+++.|..-.+.+.++|.|.+|+|||+|+.++++..
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~ 256 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS 256 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc
Confidence 44555542356889999999999999999998864
No 366
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.99 E-value=0.03 Score=44.34 Aligned_cols=25 Identities=48% Similarity=0.602 Sum_probs=21.3
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||...+....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3568999999999999999988653
No 367
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.98 E-value=0.029 Score=44.54 Aligned_cols=23 Identities=30% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEEEEeCCCchHHHHHHHHHhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
--|+|.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 368
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.97 E-value=0.036 Score=44.62 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.2
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
...|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999865
No 369
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.96 E-value=0.031 Score=44.17 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
--|+|.|.+|+|||||...+....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998653
No 370
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.94 E-value=0.039 Score=43.96 Aligned_cols=25 Identities=40% Similarity=0.535 Sum_probs=21.1
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|.|.+|+|||||+..+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 4568999999999999999987654
No 371
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.94 E-value=0.041 Score=44.06 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=22.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|.|.+|+|||||...+....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 45678999999999999999988763
No 372
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.94 E-value=0.03 Score=44.46 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
--|+|.|.+|+|||||+..+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999998643
No 373
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.93 E-value=0.031 Score=47.72 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++|.|++|+||||+|+.++..+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999877
No 374
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.93 E-value=0.03 Score=44.30 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.4
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
-|+|+|.+|+|||||...+....
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47999999999999999887543
No 375
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.93 E-value=0.029 Score=45.73 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|+|.+|+|||||+..+....
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44678999999999999998887653
No 376
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.93 E-value=0.032 Score=44.67 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=21.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|.|.+|+|||||+..+....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCc
Confidence 34568999999999999999988653
No 377
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.92 E-value=0.051 Score=51.61 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=20.8
Q ss_pred CcEEEEEEeCCCchHHHHHH-HHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLV-NFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~-~~~~~~ 82 (339)
+.+.++|.|.+|+|||+||. .+++..
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh
Confidence 55788999999999999965 555553
No 378
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.92 E-value=0.03 Score=44.81 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|.|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998653
No 379
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.90 E-value=0.068 Score=47.80 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.2
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...++|.|++|+||||+|..+..+-
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 3789999999999999999998763
No 380
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.89 E-value=0.039 Score=44.27 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|+|.+|+|||||+..+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 45678999999999999999988654
No 381
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.88 E-value=0.027 Score=48.05 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=21.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+...|+|.|+.|+||||+++.+++.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999884
No 382
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.88 E-value=0.035 Score=45.18 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|.|.+|+|||||+..+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34678999999999999999998764
No 383
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.85 E-value=0.034 Score=45.53 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
...|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 384
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.85 E-value=0.035 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.476 Sum_probs=23.2
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+.+|+|+|++|+||||++..++..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998773
No 385
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.84 E-value=0.077 Score=45.97 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=28.4
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
++|+|.|-||+||||+|..++..+. +..+ -++.++..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~-~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGK-TIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTC-CEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCC-cEEEEcCC
Confidence 5677789999999999999999885 2223 46666666
No 386
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.83 E-value=0.034 Score=51.44 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|++|+|||||.+.++--.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 56899999999999999999888643
No 387
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.82 E-value=0.073 Score=57.90 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=51.3
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec---------------------CCCCHHHHHHHHHHHh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV---------------------DNKNQQGRAEEIFQRL 114 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---------------------~~~~~~~~~~~l~~~l 114 (339)
++.++|.|+|+.|+||||||.++..... ..-..++|+... .+...++.+..+...+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~~~---~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~ 1505 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1505 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHH
Confidence 4568999999999999999999997763 333556777664 4455566666666666
Q ss_pred c-CCceEEEEecCCC
Q 039134 115 S-QRRFALLLDDLRG 128 (339)
Q Consensus 115 ~-~k~~LlvlDdv~~ 128 (339)
+ +..-++|+|-|..
T Consensus 1506 ~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1506 RSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHTCCSEEEESCSTT
T ss_pred HcCCCCEEEEccHHh
Confidence 4 5677899998843
No 388
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.81 E-value=0.039 Score=46.04 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=23.3
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|.|.|+.|+||||+++.++..+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999998
No 389
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.80 E-value=0.03 Score=45.39 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.2
Q ss_pred EEEEEeCCCchHHHHHHHHHhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
-|+|.|.+|+|||||...+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999988753
No 390
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.78 E-value=0.035 Score=44.76 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
....|+|.|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 5678899999999999999988743
No 391
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.77 E-value=0.039 Score=50.01 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=23.9
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....+++|.|++|+|||||.+.+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 367899999999999999999998665
No 392
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.77 E-value=0.036 Score=52.25 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=30.6
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
....++.|.|.+|+|||+||.+++.+.. .. -..++|++..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a-~~--g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMS-DN--DDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHH-HT--TCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHH-Hc--CCEEEEEECC
Confidence 3558999999999999999999998874 22 2356676544
No 393
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.76 E-value=0.033 Score=45.46 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=22.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|+|.+|+|||+|+..+....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 44678999999999999999888653
No 394
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.76 E-value=0.034 Score=43.98 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEEEeCCCchHHHHHHHHHhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 395
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.76 E-value=0.045 Score=43.43 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.6
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...|+|.|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999997653
No 396
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.76 E-value=0.022 Score=47.31 Aligned_cols=25 Identities=20% Similarity=0.281 Sum_probs=21.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
....++|+|++|+|||||.+.++..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999887754
No 397
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.76 E-value=0.22 Score=47.88 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=26.7
Q ss_pred HHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 48 VWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 48 l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+++.|..-.+.+.++|.|.+|+|||+|+.++++..
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~ 251 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS 251 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc
Confidence 44445442256889999999999999999987764
No 398
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.75 E-value=0.036 Score=44.84 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|.|.+|+|||||+..+....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4678999999999999999998654
No 399
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.74 E-value=0.04 Score=52.35 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=23.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
....|+++|++|+||||+++.++..+.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999998763
No 400
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.73 E-value=0.036 Score=44.29 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
--|+|+|.+|+|||||+..+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 568999999999999999998543
No 401
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.72 E-value=0.043 Score=46.40 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...|+|.|+.|+||||+++.+.+.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999999983
No 402
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.72 E-value=0.035 Score=44.41 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|+|.+|+|||||+..+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34678999999999999999998654
No 403
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.71 E-value=0.04 Score=50.18 Aligned_cols=26 Identities=27% Similarity=0.384 Sum_probs=23.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|+|++|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999998754
No 404
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.68 E-value=0.038 Score=44.83 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=22.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999998865
No 405
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.64 E-value=0.036 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
--|+|.|.+|+|||||+..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998654
No 406
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.64 E-value=0.036 Score=44.71 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=22.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|+|.+|+|||||+..+....
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34678999999999999999998653
No 407
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.64 E-value=0.028 Score=45.18 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|.|.+|+|||+|+..+....
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3568999999999999999998753
No 408
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.62 E-value=0.036 Score=44.92 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||+..+....
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998643
No 409
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.57 E-value=0.044 Score=53.80 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=24.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|.|.|++|+||||+|+.+...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999887
No 410
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.56 E-value=0.1 Score=50.12 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=21.7
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..++|.|+.|+||||+++.++...
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 569999999999999999988776
No 411
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.55 E-value=0.041 Score=44.32 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=21.6
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...|+|.|.+|+|||||+..+....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4678999999999999999998543
No 412
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.54 E-value=0.038 Score=45.45 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=20.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
.--|+|+|.+|+|||+|...+...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998853
No 413
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.52 E-value=0.039 Score=44.48 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
--|+|.|.+|+|||||...+....
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999988653
No 414
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.52 E-value=0.039 Score=44.46 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...-|+|+|.+|+|||||+..+....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC
Confidence 34678999999999999999998653
No 415
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.50 E-value=0.04 Score=44.87 Aligned_cols=25 Identities=40% Similarity=0.264 Sum_probs=20.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||++.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568999999999999997666554
No 416
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.044 Score=44.74 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=21.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||+..+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3578999999999999999988754
No 417
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.48 E-value=0.031 Score=44.83 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=22.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...-|+|.|.+|+|||||+..+....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 44678999999999999999987653
No 418
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.48 E-value=0.04 Score=44.28 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.1
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999888653
No 419
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.48 E-value=0.08 Score=46.53 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=29.0
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
.++|+|.|-||+||||+|..++..+. +..+ -++.++..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La--~~G~-rVlliD~D 39 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA--EMGK-KVMIVGCD 39 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH--HTTC-CEEEEEEC
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH--HCCC-eEEEEecC
Confidence 46788899999999999999998884 2233 36666666
No 420
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.46 E-value=0.039 Score=44.29 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||+..+....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999988653
No 421
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.46 E-value=0.071 Score=44.27 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHhhhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
.|+|-|..|+||||.++.+++.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999984
No 422
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.46 E-value=0.04 Score=45.00 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=22.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|+|.+|+|||||+..+....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34678999999999999999988754
No 423
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.44 E-value=0.07 Score=50.31 Aligned_cols=34 Identities=6% Similarity=0.106 Sum_probs=26.1
Q ss_pred HHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 49 WECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 49 ~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
++.|..-.+.+.++|.|.+|+|||+|+..+++..
T Consensus 143 ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~ 176 (469)
T 2c61_A 143 IDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA 176 (469)
T ss_dssp HHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred eeeeeccccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444432245777889999999999999999886
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.42 E-value=0.055 Score=42.78 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.6
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++.+|+|+.|+||||+...++--+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4788999999999999999887644
No 425
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.40 E-value=0.036 Score=45.44 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHhh
Q 039134 61 ICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~ 81 (339)
+.|+|.+|+|||++|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998755
No 426
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.38 E-value=0.044 Score=45.63 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998764
No 427
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.38 E-value=0.066 Score=50.27 Aligned_cols=26 Identities=8% Similarity=0.140 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+.+.++|.|.+|+|||+|+.++++..
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~ 171 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQA 171 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHC
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHH
Confidence 45778999999999999999988876
No 428
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.37 E-value=0.043 Score=44.01 Aligned_cols=25 Identities=48% Similarity=0.579 Sum_probs=21.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|.|.+|+|||||...+....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4578999999999999999988654
No 429
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.37 E-value=0.042 Score=44.88 Aligned_cols=25 Identities=24% Similarity=0.390 Sum_probs=21.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||+..+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568999999999999999998764
No 430
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.36 E-value=0.042 Score=45.05 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=22.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|.|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34678999999999999999998753
No 431
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.33 E-value=0.045 Score=45.40 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=22.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..-.|+|+|.+|+|||||+..+....
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34678999999999999999988654
No 432
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.32 E-value=0.045 Score=44.75 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=21.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||+..+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998654
No 433
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.26 E-value=0.044 Score=45.16 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=22.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..-.|+|+|.+|+|||||+..+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45678999999999999999988764
No 434
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.24 E-value=0.048 Score=44.96 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...-|+|+|.+|+|||||+..+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45778999999999999999998764
No 435
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.23 E-value=0.046 Score=44.48 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||+..+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4678999999999999999988664
No 436
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.23 E-value=0.035 Score=45.73 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=20.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNS 80 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~ 80 (339)
..-.|+|+|.+|+|||||+..+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 456889999999999999999853
No 437
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.21 E-value=0.055 Score=45.69 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|+|.+|+|||||+..++...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998753
No 438
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.20 E-value=0.043 Score=45.09 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=21.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|+|.+|+|||+|++.+....
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC
Confidence 44678999999999999998776643
No 439
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.19 E-value=0.13 Score=46.58 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.7
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....+++|.|++|+|||||+..++...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999988665
No 440
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.18 E-value=0.083 Score=49.67 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=23.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....++|.|++|+|||||++.++...
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 55899999999999999999998876
No 441
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.18 E-value=0.21 Score=47.68 Aligned_cols=40 Identities=15% Similarity=-0.022 Sum_probs=30.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
...++.|.|++|+|||+||.+++.... ..+-..++|++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG--TAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT--TTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH--HhcCCcEEEEecc
Confidence 457999999999999999999998874 1112357777654
No 442
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.18 E-value=0.064 Score=47.77 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+++|.|++|+|||||.+.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 688999999999999999998 54
No 443
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.17 E-value=0.047 Score=46.11 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.6
Q ss_pred EEEEEeCCCchHHHHHHHHHhh
Q 039134 60 IICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 60 ~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
-|+|+|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 5789999999999999998765
No 444
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.17 E-value=0.048 Score=44.61 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=22.4
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|+|.+|+|||||...+....
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998764
No 445
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.16 E-value=0.047 Score=45.41 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=21.3
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|.|.+|+|||||...+....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999998653
No 446
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.16 E-value=0.048 Score=44.42 Aligned_cols=25 Identities=28% Similarity=0.213 Sum_probs=21.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||...+....
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4678999999999999999998654
No 447
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.15 E-value=0.048 Score=44.46 Aligned_cols=25 Identities=40% Similarity=0.592 Sum_probs=21.9
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||+..+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998754
No 448
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.14 E-value=0.046 Score=45.03 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.6
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||+..+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999988654
No 449
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.13 E-value=0.072 Score=45.25 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=23.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+|.|.|+.|+||||+|+.++..+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 4799999999999999999999987
No 450
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.13 E-value=0.064 Score=44.07 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...-|+|.|.+|+|||||+..+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 45678999999999999999988653
No 451
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.13 E-value=0.048 Score=44.50 Aligned_cols=25 Identities=36% Similarity=0.564 Sum_probs=21.4
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999988653
No 452
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.11 E-value=0.043 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.458 Sum_probs=18.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNS 80 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~ 80 (339)
--|+|+|++|+|||||.+.++.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3459999999999999999764
No 453
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.11 E-value=0.047 Score=44.63 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|+|.+|+|||||...+....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999988654
No 454
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.07 E-value=0.053 Score=44.29 Aligned_cols=25 Identities=28% Similarity=0.580 Sum_probs=21.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
..--|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3467899999999999999999864
No 455
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.07 E-value=0.27 Score=55.97 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=46.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHHHHHh-----cCCceEEEEecCC
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEIFQRL-----SQRRFALLLDDLR 127 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~ 127 (339)
..+-++++|.||+||++|++.++.-. .++ ++-+.++..-+..+..+.++..+ ++++..++++|..
T Consensus 1608 p~G~~LLvGvgGsGkqSltrLaa~i~-----~~~-~fqi~~~~~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1677 (2695)
T 4akg_A 1608 VQGHMMLIGASRTGKTILTRFVAWLN-----GLK-IVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESN 1677 (2695)
T ss_dssp SSEEEEEECTTTSCHHHHHHHHHHHT-----TCE-EECCCCCTTCCHHHHHHHHHHHHHHHHHSCCCEEEEEETTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHHh-----CCe-eEEEEeeCCCCHHHHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence 45788999999999999999887765 222 23334445556666666665543 6899999999864
No 456
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.05 E-value=0.051 Score=44.21 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=21.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.-.|+|+|.+|+|||||+..+....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3578999999999999999998764
No 457
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.04 E-value=0.058 Score=43.64 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|.|.+|+|||||...+....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45788999999999999999998654
No 458
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.03 E-value=0.054 Score=49.29 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...++|.|++|+|||||.+.++...
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45899999999999999999999886
No 459
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.03 E-value=0.059 Score=51.55 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
...+|+|+|.+|+||||++..++..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999997763
No 460
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.03 E-value=0.049 Score=44.04 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=21.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..-.|+|+|.+|+|||||...+....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998653
No 461
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.02 E-value=0.05 Score=44.89 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=21.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|.|.+|+|||||+..+....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 45678999999999999999987543
No 462
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.00 E-value=0.05 Score=45.71 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=20.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNS 80 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~ 80 (339)
..--|+|+|.+|+|||+|...+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999999874
No 463
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.00 E-value=0.054 Score=44.75 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=21.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||+..+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988654
No 464
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.99 E-value=0.12 Score=46.83 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=29.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
...++++.|-||+||||+|..++..+. ..-.-++-++..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D 53 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTD 53 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECC
Confidence 568889999999999999999998884 222335555544
No 465
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.99 E-value=0.15 Score=50.14 Aligned_cols=49 Identities=22% Similarity=0.178 Sum_probs=32.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecCCCCHHHHHHHH
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVDNKNQQGRAEEI 110 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 110 (339)
+..+|+|++|.|||+++..+...+. ..-...+.++.......+.+.+.+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~---~~~~~~ilv~a~tn~A~~~l~~~l 244 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLA---RQGNGPVLVCAPSNIAVDQLTEKI 244 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH---TSSSCCEEEEESSHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEeCcHHHHHHHHHHH
Confidence 5788999999999999888877763 112334555555554445544444
No 466
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.98 E-value=0.2 Score=41.11 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=26.8
Q ss_pred EEEEEE-eCCCchHHHHHHHHHhhhhcccCCcceEEEEEec
Q 039134 59 RIICLY-GVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAV 98 (339)
Q Consensus 59 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 98 (339)
++|.|+ +-||+||||+|..++..+.+ ... .++.++..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~--~g~-~vlliD~D 39 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR--SGY-NIAVVDTD 39 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH--TTC-CEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH--CCC-eEEEEECC
Confidence 567777 57999999999999998852 222 35666654
No 467
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.95 E-value=0.049 Score=44.74 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=20.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|+|.+|+|||||...+....
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34678999999999999999888653
No 468
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.94 E-value=0.052 Score=44.66 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...-|+|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 45788999999999999999987653
No 469
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.93 E-value=0.082 Score=51.61 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=28.3
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEE
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILV 95 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 95 (339)
+....++|+|+.|+|||||++.++.-. ....+.+.+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~----~p~~G~i~~ 402 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY----DIDEGHILM 402 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT----CCSEEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc----CCCCCeEEE
Confidence 356899999999999999999988776 334455554
No 470
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.87 E-value=0.09 Score=51.22 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 44 ILDEVWECFEDDFPMRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 44 ~~~~l~~~l~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
+..+....+... ++++|+|++|+||||++..+...+.
T Consensus 193 ~Q~~Av~~~~~~---~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 193 EQASVLDQLAGH---RLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp HHHHHHHHHTTC---SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 333444444433 7899999999999999999988773
No 471
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.86 E-value=0.059 Score=44.00 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|.|.+|+|||+|+..+....
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998763
No 472
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.84 E-value=0.15 Score=44.40 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=27.6
Q ss_pred HHHHHHHHhhc-CCCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 44 ILDEVWECFED-DFPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 44 ~~~~l~~~l~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+.++...+.. +.....|+++|.+|+|||||...++...
T Consensus 24 ~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 24 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444443 2245788999999999999999998654
No 473
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.84 E-value=0.066 Score=45.64 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 46789999999999999999988754
No 474
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.80 E-value=0.057 Score=49.28 Aligned_cols=24 Identities=42% Similarity=0.499 Sum_probs=21.6
Q ss_pred EEEEEEeCCCchHHHHHHHHHhhh
Q 039134 59 RIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 59 ~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.+++|.|++|+|||||++.++...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 588999999999999999988765
No 475
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.77 E-value=0.056 Score=45.17 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
..--|+|+|.+|+|||||+..+...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3467899999999999999998864
No 476
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.77 E-value=0.074 Score=43.21 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=22.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|+|.+|+|||||...+....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 34678999999999999999988643
No 477
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.75 E-value=0.061 Score=44.56 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..-|+|.|.+|+|||||+..+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999988753
No 478
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.74 E-value=0.056 Score=48.10 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+...|+|+|.+|+|||||...+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 35689999999999999999998653
No 479
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.73 E-value=0.062 Score=44.38 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.1
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|+|.+|+|||||+..+....
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC
Confidence 45678999999999999999987653
No 480
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.73 E-value=0.062 Score=44.58 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=21.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..--|+|.|.+|+|||||+..+....
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999988653
No 481
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.72 E-value=0.059 Score=48.10 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=23.5
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+....|+|+|.+|+|||||...+....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356899999999999999999988653
No 482
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.70 E-value=0.075 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...|+|.|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999988653
No 483
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.70 E-value=0.12 Score=49.09 Aligned_cols=35 Identities=11% Similarity=0.022 Sum_probs=24.5
Q ss_pred HHHHhhcCCCcEEEEEEeCCCchHHHHHH-HHHhhh
Q 039134 48 VWECFEDDFPMRIICLYGVSGVGKTTLLV-NFNSKF 82 (339)
Q Consensus 48 l~~~l~~~~~~~~v~I~G~~GiGKTtLa~-~~~~~~ 82 (339)
.++.+..-.+.+.++|.|.+|+|||+||. .+++..
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~ 187 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK 187 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 34444442256888999999999999954 555554
No 484
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.69 E-value=0.095 Score=43.67 Aligned_cols=26 Identities=19% Similarity=0.338 Sum_probs=22.9
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+|+|+|++|+||+++|..+.+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 46899999999999999999887755
No 485
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.68 E-value=0.068 Score=43.79 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=21.5
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
..-.|+|.|.+|+|||||+..+...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999998754
No 486
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.68 E-value=0.13 Score=43.73 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=27.3
Q ss_pred EEEEeCCCchHHHHHHHHHhhhhcccCCcceEEEEEecC
Q 039134 61 ICLYGVSGVGKTTLLVNFNSKFSDTRHNFYLVILVKAVD 99 (339)
Q Consensus 61 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 99 (339)
|+|.|-||+||||+|..++..+. +.. .-++-++...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la--~~g-~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA--SDY-DKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT--TTC-SCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHH--HCC-CeEEEEeCCC
Confidence 55689999999999999999985 222 3466676663
No 487
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.67 E-value=0.049 Score=44.57 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=20.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|.|.+|+|||||+..+....
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999988653
No 488
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.67 E-value=0.054 Score=51.29 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=23.2
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|+|+.|+|||||++.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45889999999999999999988765
No 489
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.61 E-value=0.062 Score=44.47 Aligned_cols=26 Identities=46% Similarity=0.584 Sum_probs=21.7
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...-|+|+|.+|+|||||+..+....
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34678999999999999999988653
No 490
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.60 E-value=0.076 Score=51.84 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.9
Q ss_pred CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 56 FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 56 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
+....++|+|+.|+|||||++.++.-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355899999999999999999988776
No 491
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.59 E-value=0.038 Score=44.60 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=10.5
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSK 81 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~ 81 (339)
.--|+|+|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999988754
No 492
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.59 E-value=0.067 Score=44.09 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.7
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||+..+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3578999999999999999988754
No 493
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.58 E-value=0.047 Score=44.46 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.0
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..-.|+|.|.+|+|||||...+....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999988764
No 494
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.55 E-value=0.075 Score=48.63 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHH
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFN 79 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~ 79 (339)
+..-|+|.|.||+||||+++++-
T Consensus 32 ~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHHH
Confidence 56788999999999999999874
No 495
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.52 E-value=0.075 Score=48.36 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.8
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
..+++++.|-||+||||+|..++..+
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 56899999999999999999998887
No 496
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.45 E-value=0.067 Score=44.72 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.--|+|+|.+|+|||||+..+....
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999988764
No 497
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.38 E-value=0.18 Score=43.58 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=27.0
Q ss_pred HHHHHHhhcC-CCcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 46 DEVWECFEDD-FPMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 46 ~~l~~~l~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
.++...+... ...-.|+|+|.+|+|||||...+....
T Consensus 23 ~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 23 IEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344444432 345789999999999999999998754
No 498
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.37 E-value=0.13 Score=46.24 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.8
Q ss_pred cEEEEEEeCCCchHHHHHHHHHhhhh
Q 039134 58 MRIICLYGVSGVGKTTLLVNFNSKFS 83 (339)
Q Consensus 58 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 83 (339)
..+++..|-||+||||+|..++..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA 39 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMA 39 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH
Confidence 47778888999999999999998884
No 499
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.34 E-value=0.055 Score=45.24 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
....|+|.|.+|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998764
No 500
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.23 E-value=0.079 Score=51.20 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.6
Q ss_pred CcEEEEEEeCCCchHHHHHHHHHhhh
Q 039134 57 PMRIICLYGVSGVGKTTLLVNFNSKF 82 (339)
Q Consensus 57 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 82 (339)
...+++|.|+.|+|||||.+.++-..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45899999999999999999887643
Done!