Query 039136
Match_columns 130
No_of_seqs 134 out of 1071
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:37:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.0 2.8E-09 6.1E-14 92.9 9.9 89 26-130 27-130 (968)
2 PF08263 LRRNT_2: Leucine rich 98.5 3.4E-07 7.3E-12 51.3 4.3 41 27-76 2-43 (43)
3 PLN03150 hypothetical protein; 98.3 2.6E-06 5.7E-11 72.1 7.4 87 24-130 368-478 (623)
4 PF12799 LRR_4: Leucine Rich r 97.1 0.00047 1E-08 38.7 2.1 34 82-130 3-36 (44)
5 PF13855 LRR_8: Leucine rich r 95.9 0.006 1.3E-07 35.9 2.1 37 80-130 25-61 (61)
6 PF13855 LRR_8: Leucine rich r 95.7 0.008 1.7E-07 35.3 1.9 36 81-130 2-37 (61)
7 PF13504 LRR_7: Leucine rich r 93.5 0.04 8.7E-07 24.5 1.0 13 118-130 1-13 (17)
8 PLN03150 hypothetical protein; 93.3 0.062 1.3E-06 45.8 2.5 46 80-130 442-502 (623)
9 KOG4237 Extracellular matrix p 92.7 0.078 1.7E-06 43.3 2.1 36 81-130 68-103 (498)
10 smart00370 LRR Leucine-rich re 92.0 0.13 2.8E-06 25.0 1.7 14 117-130 1-14 (26)
11 smart00369 LRR_TYP Leucine-ric 92.0 0.13 2.8E-06 25.0 1.7 14 117-130 1-14 (26)
12 PF00560 LRR_1: Leucine Rich R 91.1 0.064 1.4E-06 25.3 -0.0 12 119-130 1-12 (22)
13 KOG0472 Leucine-rich repeat pr 90.7 0.16 3.6E-06 41.7 2.0 35 81-130 506-540 (565)
14 smart00368 LRR_RI Leucine rich 89.8 0.26 5.7E-06 24.6 1.6 13 118-130 2-14 (28)
15 PF13516 LRR_6: Leucine Rich r 89.4 0.17 3.8E-06 24.1 0.8 14 117-130 1-14 (24)
16 KOG0472 Leucine-rich repeat pr 88.0 0.26 5.6E-06 40.6 1.3 23 106-130 448-470 (565)
17 smart00365 LRR_SD22 Leucine-ri 87.8 0.46 1E-05 23.6 1.7 14 117-130 1-14 (26)
18 PLN00113 leucine-rich repeat r 86.9 0.49 1.1E-05 41.9 2.5 23 105-129 560-582 (968)
19 KOG0617 Ras suppressor protein 80.7 0.29 6.3E-06 36.1 -1.3 22 106-129 69-90 (264)
20 KOG0444 Cytoskeletal regulator 77.9 0.65 1.4E-05 40.6 -0.2 25 104-130 91-115 (1255)
21 KOG0618 Serine/threonine phosp 75.6 0.82 1.8E-05 41.0 -0.2 44 70-130 376-419 (1081)
22 smart00364 LRR_BAC Leucine-ric 75.6 1.8 3.8E-05 21.5 1.1 12 119-130 3-14 (26)
23 PRK15387 E3 ubiquitin-protein 70.7 2 4.3E-05 38.0 0.9 22 107-130 436-457 (788)
24 KOG0444 Cytoskeletal regulator 70.0 2 4.4E-05 37.7 0.8 22 107-129 140-161 (1255)
25 PF14580 LRR_9: Leucine-rich r 67.6 2.8 6.2E-05 30.2 1.1 15 116-130 86-100 (175)
26 PF14580 LRR_9: Leucine-rich r 65.7 5.5 0.00012 28.7 2.3 35 80-130 42-76 (175)
27 KOG4579 Leucine-rich repeat (L 59.5 1.4 3E-05 31.4 -1.7 23 106-130 90-112 (177)
28 KOG1259 Nischarin, modulator o 57.0 7.8 0.00017 31.2 1.9 16 115-130 326-341 (490)
29 KOG0617 Ras suppressor protein 55.2 4.1 9E-05 30.2 0.1 22 107-130 93-114 (264)
30 COG4886 Leucine-rich repeat (L 50.7 6.9 0.00015 30.9 0.7 20 108-129 155-174 (394)
31 smart00367 LRR_CC Leucine-rich 49.8 13 0.00029 17.7 1.4 13 117-129 1-13 (26)
32 cd00116 LRR_RI Leucine-rich re 48.2 13 0.00029 27.9 1.9 16 115-130 218-233 (319)
33 cd00116 LRR_RI Leucine-rich re 43.9 12 0.00026 28.1 1.1 12 80-91 81-92 (319)
34 KOG4658 Apoptotic ATPase [Sign 43.3 16 0.00034 33.0 1.8 22 106-129 585-606 (889)
35 KOG2982 Uncharacterized conser 43.1 5.8 0.00013 31.8 -0.8 16 115-130 94-109 (418)
36 KOG0618 Serine/threonine phosp 42.8 8 0.00017 35.1 -0.0 23 106-130 104-126 (1081)
37 KOG2739 Leucine-rich acidic nu 42.4 15 0.00033 28.2 1.4 16 115-130 88-103 (260)
38 KOG4194 Membrane glycoprotein 41.6 8.9 0.00019 33.4 0.1 12 80-91 125-136 (873)
39 PLN03210 Resistant to P. syrin 39.3 26 0.00056 32.3 2.6 21 106-128 792-812 (1153)
40 PF07172 GRP: Glycine rich pro 38.4 33 0.00072 22.2 2.4 17 2-18 4-20 (95)
41 PRK15370 E3 ubiquitin-protein 37.1 34 0.00074 30.3 2.9 20 107-130 276-295 (754)
42 KOG1259 Nischarin, modulator o 35.4 14 0.00031 29.7 0.4 22 107-130 298-319 (490)
43 KOG0531 Protein phosphatase 1, 34.2 28 0.00061 28.0 1.9 16 115-130 115-130 (414)
44 PRK15370 E3 ubiquitin-protein 31.6 46 0.00099 29.5 2.8 17 25-41 60-76 (754)
45 PRK15387 E3 ubiquitin-protein 30.2 47 0.001 29.7 2.7 10 82-91 224-233 (788)
46 KOG0532 Leucine-rich repeat (L 30.0 39 0.00085 29.4 2.1 35 81-130 212-246 (722)
47 COG4886 Leucine-rich repeat (L 28.2 47 0.001 26.1 2.2 23 106-130 129-152 (394)
48 KOG4194 Membrane glycoprotein 27.0 34 0.00074 30.0 1.2 34 82-130 394-428 (873)
49 KOG0532 Leucine-rich repeat (L 26.2 13 0.00029 32.1 -1.3 23 106-130 111-133 (722)
50 PRK11289 ampC beta-lactamase/D 23.9 1.3E+02 0.0027 24.2 3.9 23 1-23 2-24 (384)
51 PLN03210 Resistant to P. syrin 23.6 68 0.0015 29.6 2.6 19 107-127 860-878 (1153)
52 KOG1909 Ran GTPase-activating 23.3 31 0.00067 28.0 0.3 16 115-130 89-104 (382)
53 KOG4237 Extracellular matrix p 20.8 42 0.0009 27.9 0.6 17 114-130 318-334 (498)
54 COG4764 Uncharacterized protei 20.3 1.2E+02 0.0026 22.0 2.7 21 1-21 1-21 (197)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.99 E-value=2.8e-09 Score=92.94 Aligned_cols=89 Identities=27% Similarity=0.390 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCccCCCCCCCCCCCCCCCCCCceEEecCCCCceEEEecCCCCCcccCCCC------
Q 039136 26 VETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDYN------ 99 (130)
Q Consensus 26 ~~~~~~aL~~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~~C~~W~GV~C~~~~~rV~~L~L~~~~~~~l~~~~------ 99 (130)
.+.|+.+|++||+.+. ++.+ .+.+|+. . .+||. |.||.|+. .++|+.|++.+++ ++|..
T Consensus 27 ~~~~~~~l~~~~~~~~----~~~~--~~~~w~~--~--~~~c~-w~gv~c~~-~~~v~~L~L~~~~---i~~~~~~~~~~ 91 (968)
T PLN00113 27 HAEELELLLSFKSSIN----DPLK--YLSNWNS--S--ADVCL-WQGITCNN-SSRVVSIDLSGKN---ISGKISSAIFR 91 (968)
T ss_pred CHHHHHHHHHHHHhCC----CCcc--cCCCCCC--C--CCCCc-CcceecCC-CCcEEEEEecCCC---ccccCChHHhC
Confidence 4478899999999986 6654 5788976 2 68999 99999985 4799999999887 65420
Q ss_pred ---------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136 100 ---------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 100 ---------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
..+.++|.+|..+ |..+++|++|||++|++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~-~~~l~~L~~L~Ls~n~l 130 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDI-FTTSSSLRYLNLSNNNF 130 (968)
T ss_pred CCCCCEEECCCCccCCcCChHH-hccCCCCCEEECcCCcc
Confidence 1223556777766 34778888888887764
No 2
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.46 E-value=3.4e-07 Score=51.28 Aligned_cols=41 Identities=39% Similarity=0.704 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcccccCC-CCCCccCCCCCCCCCCCCCCCCCCceEEec
Q 039136 27 ETKRIALLEIKSFFISASDV-GFDDEILSSWFDDDGMSSDCCNDWEGVKCN 76 (130)
Q Consensus 27 ~~~~~aL~~~k~~l~~~~~~-~~~~~~l~~W~~~~~~~~~~C~~W~GV~C~ 76 (130)
+.|+.+|++||..+. . +.+ .+.+|+... ..+||+ |.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~----~~~~~--~l~~W~~~~--~~~~C~-W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLN----NDPSG--VLSSWNPSS--DSDPCS-WSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-----SC-C--CCTT--TT----S-CCC-STTEEE-
T ss_pred cHHHHHHHHHHHhcc----cccCc--ccccCCCcC--CCCCee-eccEEeC
Confidence 468999999999996 3 333 788998741 158999 9999995
No 3
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=2.6e-06 Score=72.12 Aligned_cols=87 Identities=24% Similarity=0.302 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHhcccccCCCCCCccCCCCCCCCCCCCCCC-----CCCceEEecC--CC--CceEEEecCCCCCcc
Q 039136 24 ACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCC-----NDWEGVKCNA--TT--LRVTQLSLNQKTKIN 94 (130)
Q Consensus 24 ~~~~~~~~aL~~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~~C-----~~W~GV~C~~--~~--~rV~~L~L~~~~~~~ 94 (130)
.+.+.|..+|..+|..+. ++. ..+|.+ ++| . |.||.|.. .. .+|+.|+|.+++
T Consensus 368 ~t~~~~~~aL~~~k~~~~----~~~----~~~W~g------~~C~p~~~~-w~Gv~C~~~~~~~~~~v~~L~L~~n~--- 429 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLG----LPL----RFGWNG------DPCVPQQHP-WSGADCQFDSTKGKWFIDGLGLDNQG--- 429 (623)
T ss_pred ccCchHHHHHHHHHHhcC----Ccc----cCCCCC------CCCCCcccc-cccceeeccCCCCceEEEEEECCCCC---
Confidence 455678999999998875 332 236865 334 5 99999952 11 258999999988
Q ss_pred cCCC---------------CCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 95 YSDY---------------NSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 95 l~~~---------------~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++|. -..+.+.|.+|..+ +.+++|+.|||++|+|
T Consensus 430 L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~--~~l~~L~~LdLs~N~l 478 (623)
T PLN03150 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL--GSITSLEVLDLSYNSF 478 (623)
T ss_pred ccccCCHHHhCCCCCCEEECCCCcccCcCChHH--hCCCCCCEEECCCCCC
Confidence 7652 02334678888888 8899999999998875
No 4
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.05 E-value=0.00047 Score=38.67 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=27.7
Q ss_pred eEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 82 VTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 82 V~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+..|++.+++ + ..+|+++ ++|++|++|++++|++
T Consensus 3 L~~L~l~~N~---i----------~~l~~~l--~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQ---I----------TDLPPEL--SNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS--------------SSHGGHG--TTCTTSSEEEETSSCC
T ss_pred ceEEEccCCC---C----------cccCchH--hCCCCCCEEEecCCCC
Confidence 5678888888 6 3688888 9999999999999986
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.91 E-value=0.006 Score=35.87 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=28.9
Q ss_pred CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.++..|+++++. + ..+++.. |..+++|++|++++|+|
T Consensus 25 ~~L~~L~l~~N~---l----------~~i~~~~-f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 25 PNLETLDLSNNN---L----------TSIPPDA-FSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSS---E----------SEEETTT-TTTSTTESEEEETSSSB
T ss_pred CCCCEeEccCCc---c----------CccCHHH-HcCCCCCCEEeCcCCcC
Confidence 468888888888 6 3555543 48999999999999985
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.65 E-value=0.008 Score=35.32 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=28.5
Q ss_pred ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++..|++.++. + -.+|+.. |..+++|++||+++|.+
T Consensus 2 ~L~~L~l~~n~---l----------~~i~~~~-f~~l~~L~~L~l~~N~l 37 (61)
T PF13855_consen 2 NLESLDLSNNK---L----------TEIPPDS-FSNLPNLETLDLSNNNL 37 (61)
T ss_dssp TESEEEETSST---E----------SEECTTT-TTTGTTESEEEETSSSE
T ss_pred cCcEEECCCCC---C----------CccCHHH-HcCCCCCCEeEccCCcc
Confidence 46778888888 6 3677654 48999999999999974
No 7
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.54 E-value=0.04 Score=24.52 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=8.8
Q ss_pred ccCCeEeCCCCCC
Q 039136 118 EELQRLDLSDKLV 130 (130)
Q Consensus 118 ~~L~~LdLs~N~l 130 (130)
++|+.|||++|+|
T Consensus 1 ~~L~~L~l~~n~L 13 (17)
T PF13504_consen 1 PNLRTLDLSNNRL 13 (17)
T ss_dssp TT-SEEEETSS--
T ss_pred CccCEEECCCCCC
Confidence 4689999999975
No 8
>PLN03150 hypothetical protein; Provisional
Probab=93.33 E-value=0.062 Score=45.84 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=35.0
Q ss_pred CceEEEecCCCCCcccCCC---------------CCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDY---------------NSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~---------------~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.++..|+|.++. +.|. -.++.++|.+|..+ ++|++|++|||++|+|
T Consensus 442 ~~L~~L~Ls~N~---l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l--~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 442 RHLQSINLSGNS---IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL--GQLTSLRILNLNGNSL 502 (623)
T ss_pred CCCCEEECCCCc---ccCcCChHHhCCCCCCEEECCCCCCCCCCchHH--hcCCCCCEEECcCCcc
Confidence 356777888777 6541 02334789999999 9999999999999975
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=92.67 E-value=0.078 Score=43.29 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=30.3
Q ss_pred ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
..++|.|+.++ + -.||+.. |..+.+|+.||||+|++
T Consensus 68 ~tveirLdqN~---I----------~~iP~~a-F~~l~~LRrLdLS~N~I 103 (498)
T KOG4237|consen 68 ETVEIRLDQNQ---I----------SSIPPGA-FKTLHRLRRLDLSKNNI 103 (498)
T ss_pred cceEEEeccCC---c----------ccCChhh-ccchhhhceecccccch
Confidence 46788999888 7 4788765 69999999999999985
No 10
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.99 E-value=0.13 Score=24.98 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=12.0
Q ss_pred CccCCeEeCCCCCC
Q 039136 117 FEELQRLDLSDKLV 130 (130)
Q Consensus 117 l~~L~~LdLs~N~l 130 (130)
|++|++|+|++|++
T Consensus 1 L~~L~~L~L~~N~l 14 (26)
T smart00370 1 LPNLRELDLSNNQL 14 (26)
T ss_pred CCCCCEEECCCCcC
Confidence 56899999999975
No 11
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.99 E-value=0.13 Score=24.98 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=12.0
Q ss_pred CccCCeEeCCCCCC
Q 039136 117 FEELQRLDLSDKLV 130 (130)
Q Consensus 117 l~~L~~LdLs~N~l 130 (130)
|++|++|+|++|++
T Consensus 1 L~~L~~L~L~~N~l 14 (26)
T smart00369 1 LPNLRELDLSNNQL 14 (26)
T ss_pred CCCCCEEECCCCcC
Confidence 56899999999975
No 12
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.07 E-value=0.064 Score=25.30 Aligned_cols=12 Identities=42% Similarity=0.540 Sum_probs=10.0
Q ss_pred cCCeEeCCCCCC
Q 039136 119 ELQRLDLSDKLV 130 (130)
Q Consensus 119 ~L~~LdLs~N~l 130 (130)
+|++|||++|+|
T Consensus 1 ~L~~Ldls~n~l 12 (22)
T PF00560_consen 1 NLEYLDLSGNNL 12 (22)
T ss_dssp TESEEEETSSEE
T ss_pred CccEEECCCCcC
Confidence 489999999964
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.68 E-value=0.16 Score=41.70 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=29.7
Q ss_pred ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+++.++|.++. + -.||+.+ +++++|++|++++|.|
T Consensus 506 nL~tLDL~nNd---l----------q~IPp~L--gnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 506 NLTTLDLQNND---L----------QQIPPIL--GNMTNLRHLELDGNPF 540 (565)
T ss_pred hcceeccCCCc---h----------hhCChhh--ccccceeEEEecCCcc
Confidence 46667777776 6 5899999 9999999999999986
No 14
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.83 E-value=0.26 Score=24.60 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=11.2
Q ss_pred ccCCeEeCCCCCC
Q 039136 118 EELQRLDLSDKLV 130 (130)
Q Consensus 118 ~~L~~LdLs~N~l 130 (130)
++|++|||++|.|
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4789999999975
No 15
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.41 E-value=0.17 Score=24.06 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=9.3
Q ss_pred CccCCeEeCCCCCC
Q 039136 117 FEELQRLDLSDKLV 130 (130)
Q Consensus 117 l~~L~~LdLs~N~l 130 (130)
+++|++|||++|++
T Consensus 1 ~~~L~~L~l~~n~i 14 (24)
T PF13516_consen 1 NPNLETLDLSNNQI 14 (24)
T ss_dssp -TT-SEEE-TSSBE
T ss_pred CCCCCEEEccCCcC
Confidence 46799999999974
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.05 E-value=0.26 Score=40.61 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=21.2
Q ss_pred cccccccccccCccCCeEeCCCCCC
Q 039136 106 SFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 106 G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
..+|.++ +.+..||.||+|+|+|
T Consensus 448 n~LP~e~--~~lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 448 NDLPEEM--GSLVRLQTLNLSFNRF 470 (565)
T ss_pred hhcchhh--hhhhhhheeccccccc
Confidence 7899998 8999999999999987
No 17
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.78 E-value=0.46 Score=23.56 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=11.8
Q ss_pred CccCCeEeCCCCCC
Q 039136 117 FEELQRLDLSDKLV 130 (130)
Q Consensus 117 l~~L~~LdLs~N~l 130 (130)
+.+|+.|+|++|.+
T Consensus 1 L~~L~~L~L~~NkI 14 (26)
T smart00365 1 LTNLEELDLSQNKI 14 (26)
T ss_pred CCccCEEECCCCcc
Confidence 46899999999975
No 18
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=86.93 E-value=0.49 Score=41.85 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=10.4
Q ss_pred ccccccccccccCccCCeEeCCCCC
Q 039136 105 VSFLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 105 ~G~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
+|.+|..+ ..++.|++||+++|+
T Consensus 560 ~~~~p~~l--~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 560 SGEIPKNL--GNVESLVQVNISHNH 582 (968)
T ss_pred cccCChhH--hcCcccCEEeccCCc
Confidence 34444444 444444444444443
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=80.69 E-value=0.29 Score=36.13 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=14.4
Q ss_pred cccccccccccCccCCeEeCCCCC
Q 039136 106 SFLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 106 G~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
-.+|.++ +.+++|+.|+++-|.
T Consensus 69 e~lp~~i--ssl~klr~lnvgmnr 90 (264)
T KOG0617|consen 69 EELPTSI--SSLPKLRILNVGMNR 90 (264)
T ss_pred hhcChhh--hhchhhhheecchhh
Confidence 4566666 667777777766654
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=77.90 E-value=0.65 Score=40.58 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.1
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
-..-||+.| -.|..|+.||||+|+|
T Consensus 91 KnsGiP~di--F~l~dLt~lDLShNqL 115 (1255)
T KOG0444|consen 91 KNSGIPTDI--FRLKDLTILDLSHNQL 115 (1255)
T ss_pred ccCCCCchh--cccccceeeecchhhh
Confidence 356788898 6999999999999985
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=75.60 E-value=0.82 Score=41.03 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=34.0
Q ss_pred CceEEecCCCCceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 70 WEGVKCNATTLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 70 W~GV~C~~~~~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
|.-+.| ..++..|+|+.+. | +.+|+.- +.+|+.|+.|+||+|.|
T Consensus 376 ~p~l~~---~~hLKVLhLsyNr---L----------~~fpas~-~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 376 FPVLVN---FKHLKVLHLSYNR---L----------NSFPASK-LRKLEELEELNLSGNKL 419 (1081)
T ss_pred hhhhcc---ccceeeeeecccc---c----------ccCCHHH-HhchHHhHHHhcccchh
Confidence 555555 2467788888888 7 7888754 48999999999999975
No 22
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.59 E-value=1.8 Score=21.52 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=10.0
Q ss_pred cCCeEeCCCCCC
Q 039136 119 ELQRLDLSDKLV 130 (130)
Q Consensus 119 ~L~~LdLs~N~l 130 (130)
+|+.|++++|+|
T Consensus 3 ~L~~L~vs~N~L 14 (26)
T smart00364 3 SLKELNVSNNQL 14 (26)
T ss_pred ccceeecCCCcc
Confidence 578899999976
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=70.70 E-value=2 Score=38.03 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.9
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|..+ +++++|+.|+|++|.|
T Consensus 436 ~LP~sl--~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 436 RLPESL--IHLSSETTVNLEGNPL 457 (788)
T ss_pred ccChHH--hhccCCCeEECCCCCC
Confidence 788888 8999999999999986
No 24
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=69.98 E-value=2 Score=37.70 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=11.2
Q ss_pred ccccccccccCccCCeEeCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
+||..+ |.+|+.|-+||||+|.
T Consensus 140 tIPn~l-finLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 140 TIPNSL-FINLTDLLFLDLSNNR 161 (1255)
T ss_pred cCCchH-HHhhHhHhhhccccch
Confidence 444443 3455555555555554
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=67.58 E-value=2.8 Score=30.16 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=5.7
Q ss_pred cCccCCeEeCCCCCC
Q 039136 116 PFEELQRLDLSDKLV 130 (130)
Q Consensus 116 ~l~~L~~LdLs~N~l 130 (130)
.+++|+.|+|++|++
T Consensus 86 ~lp~L~~L~L~~N~I 100 (175)
T PF14580_consen 86 NLPNLQELYLSNNKI 100 (175)
T ss_dssp H-TT--EEE-TTS--
T ss_pred hCCcCCEEECcCCcC
Confidence 356666666666653
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=65.68 E-value=5.5 Score=28.69 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=13.5
Q ss_pred CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.++..++++++. ++ .++ .+ ..|++|+.|++++|.+
T Consensus 42 ~~L~~L~Ls~N~---I~----------~l~-~l--~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 42 DKLEVLDLSNNQ---IT----------KLE-GL--PGLPRLKTLDLSNNRI 76 (175)
T ss_dssp TT--EEE-TTS-----S------------T-T------TT--EEE--SS--
T ss_pred cCCCEEECCCCC---Cc----------ccc-Cc--cChhhhhhcccCCCCC
Confidence 357788888888 62 343 34 6789999999999975
No 27
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=59.46 E-value=1.4 Score=31.41 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.8
Q ss_pred cccccccccccCccCCeEeCCCCCC
Q 039136 106 SFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 106 G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
-.+|.++ +.++.|+.|++++|.|
T Consensus 90 sdvPeE~--Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 90 SDVPEEL--AAMPALRSLNLRFNPL 112 (177)
T ss_pred hhchHHH--hhhHHhhhcccccCcc
Confidence 4778888 8999999999999975
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=57.02 E-value=7.8 Score=31.17 Aligned_cols=16 Identities=44% Similarity=0.584 Sum_probs=13.5
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
+.|.+|+.||||+|.+
T Consensus 326 a~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLL 341 (490)
T ss_pred hhcccceEeecccchh
Confidence 6788999999999864
No 29
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=55.15 E-value=4.1 Score=30.18 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=12.9
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|..+ |.++.|+.|||..|++
T Consensus 93 ~lprgf--gs~p~levldltynnl 114 (264)
T KOG0617|consen 93 ILPRGF--GSFPALEVLDLTYNNL 114 (264)
T ss_pred cCcccc--CCCchhhhhhcccccc
Confidence 345555 6666666666666653
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=50.74 E-value=6.9 Score=30.88 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=11.9
Q ss_pred cccccccccCccCCeEeCCCCC
Q 039136 108 LNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 108 ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
+|..+ ..++.|+.|++++|+
T Consensus 155 l~~~~--~~l~~L~~L~l~~N~ 174 (394)
T COG4886 155 LPSPL--RNLPNLKNLDLSFND 174 (394)
T ss_pred hhhhh--hccccccccccCCch
Confidence 33345 566666666666665
No 31
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.79 E-value=13 Score=17.65 Aligned_cols=13 Identities=38% Similarity=0.422 Sum_probs=9.8
Q ss_pred CccCCeEeCCCCC
Q 039136 117 FEELQRLDLSDKL 129 (130)
Q Consensus 117 l~~L~~LdLs~N~ 129 (130)
+++|++|+|++..
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4678999988753
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=48.16 E-value=13 Score=27.89 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=10.4
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
..+++|++||+++|.+
T Consensus 218 ~~~~~L~~L~ls~n~l 233 (319)
T cd00116 218 ASLKSLEVLNLGDNNL 233 (319)
T ss_pred cccCCCCEEecCCCcC
Confidence 5566677777776653
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=43.89 E-value=12 Score=28.12 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=8.2
Q ss_pred CceEEEecCCCC
Q 039136 80 LRVTQLSLNQKT 91 (130)
Q Consensus 80 ~rV~~L~L~~~~ 91 (130)
..++.+++.++.
T Consensus 81 ~~L~~L~l~~~~ 92 (319)
T cd00116 81 CGLQELDLSDNA 92 (319)
T ss_pred CceeEEEccCCC
Confidence 357777777766
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=43.31 E-value=16 Score=32.99 Aligned_cols=22 Identities=41% Similarity=0.353 Sum_probs=15.9
Q ss_pred cccccccccccCccCCeEeCCCCC
Q 039136 106 SFLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 106 G~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
+.+|..| +.|-+||+|||++..
T Consensus 585 ~~LP~~I--~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 585 SKLPSSI--GELVHLRYLDLSDTG 606 (889)
T ss_pred CcCChHH--hhhhhhhcccccCCC
Confidence 5677777 777777777777654
No 35
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.06 E-value=5.8 Score=31.77 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=10.9
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
-+|+.|++|+||.|++
T Consensus 94 e~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSL 109 (418)
T ss_pred hcCccceEeeccCCcC
Confidence 4667777777777764
No 36
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=42.81 E-value=8 Score=35.07 Aligned_cols=23 Identities=35% Similarity=0.327 Sum_probs=20.0
Q ss_pred cccccccccccCccCCeEeCCCCCC
Q 039136 106 SFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 106 G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
-..|.++ ..+..|++||+|+|.|
T Consensus 104 ~~lP~~~--~~lknl~~LdlS~N~f 126 (1081)
T KOG0618|consen 104 QSLPASI--SELKNLQYLDLSFNHF 126 (1081)
T ss_pred hcCchhH--Hhhhcccccccchhcc
Confidence 4678888 8999999999999986
No 37
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=42.39 E-value=15 Score=28.25 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=11.4
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
-.++.|++|+||+|++
T Consensus 88 e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 88 EKAPNLKVLNLSGNKI 103 (260)
T ss_pred hhCCceeEEeecCCcc
Confidence 4557788888887764
No 38
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=41.59 E-value=8.9 Score=33.43 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=6.8
Q ss_pred CceEEEecCCCC
Q 039136 80 LRVTQLSLNQKT 91 (130)
Q Consensus 80 ~rV~~L~L~~~~ 91 (130)
+++..|+|..+-
T Consensus 125 ghl~~L~L~~N~ 136 (873)
T KOG4194|consen 125 GHLEKLDLRHNL 136 (873)
T ss_pred cceeEEeeeccc
Confidence 455666665554
No 39
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=39.34 E-value=26 Score=32.29 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=14.3
Q ss_pred cccccccccccCccCCeEeCCCC
Q 039136 106 SFLNMSLLFHPFEELQRLDLSDK 128 (130)
Q Consensus 106 G~ip~~l~~~~l~~L~~LdLs~N 128 (130)
+.+|.++ ++|++|+.|++++|
T Consensus 792 ~~lP~si--~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 792 VELPSSI--QNLHKLEHLEIENC 812 (1153)
T ss_pred cccChhh--hCCCCCCEEECCCC
Confidence 4566666 67777777777664
No 40
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=38.43 E-value=33 Score=22.24 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHHHHH
Q 039136 2 KMLLMKLSLWIGMALIQ 18 (130)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (130)
|.+++..+++.++++++
T Consensus 4 K~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLIS 20 (95)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 41
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=37.15 E-value=34 Score=30.28 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=12.5
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|..+ . ++|++|+|++|+|
T Consensus 276 ~LP~~l--~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 276 CLPENL--P--EELRYLSVYDNSI 295 (754)
T ss_pred cccccc--C--CCCcEEECCCCcc
Confidence 355544 2 4677777777764
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=35.45 E-value=14 Score=29.69 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=16.1
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.|..++ --+++++.|++|+|.+
T Consensus 298 ~iDESv--KL~Pkir~L~lS~N~i 319 (490)
T KOG1259|consen 298 QIDESV--KLAPKLRRLILSQNRI 319 (490)
T ss_pred hhhhhh--hhccceeEEeccccce
Confidence 555666 5578888888888864
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=34.24 E-value=28 Score=27.96 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=11.3
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
..+++|++||||+|.+
T Consensus 115 ~~~~~L~~L~ls~N~I 130 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKI 130 (414)
T ss_pred hhhhcchheecccccc
Confidence 5677777777777754
No 44
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=31.57 E-value=46 Score=29.50 Aligned_cols=17 Identities=6% Similarity=-0.005 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHHhcc
Q 039136 25 CVETKRIALLEIKSFFI 41 (130)
Q Consensus 25 ~~~~~~~aL~~~k~~l~ 41 (130)
..+++...+.++.+.+.
T Consensus 60 ~~~~~~~~~~~~~~~l~ 76 (754)
T PRK15370 60 ASPEEIKSKFECLRMLA 76 (754)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 34445555555555554
No 45
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=30.21 E-value=47 Score=29.67 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=5.0
Q ss_pred eEEEecCCCC
Q 039136 82 VTQLSLNQKT 91 (130)
Q Consensus 82 V~~L~L~~~~ 91 (130)
++.|.+..++
T Consensus 224 L~~L~L~~N~ 233 (788)
T PRK15387 224 ITTLVIPDNN 233 (788)
T ss_pred CCEEEccCCc
Confidence 4445555544
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=30.04 E-value=39 Score=29.40 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=26.4
Q ss_pred ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+++++++.+. + -.||-.+ .++..||+|-|.+|-|
T Consensus 212 pLi~lDfScNk---i----------s~iPv~f--r~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 212 PLIRLDFSCNK---I----------SYLPVDF--RKMRHLQVLQLENNPL 246 (722)
T ss_pred ceeeeecccCc---e----------eecchhh--hhhhhheeeeeccCCC
Confidence 35666666666 4 5788887 8999999999988854
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=28.23 E-value=47 Score=26.13 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=18.9
Q ss_pred cccccccccccCc-cCCeEeCCCCCC
Q 039136 106 SFLNMSLLFHPFE-ELQRLDLSDKLV 130 (130)
Q Consensus 106 G~ip~~l~~~~l~-~L~~LdLs~N~l 130 (130)
-.||+.+ +.+. +|+.||+++|++
T Consensus 129 ~~i~~~~--~~~~~nL~~L~l~~N~i 152 (394)
T COG4886 129 TDIPPLI--GLLKSNLKELDLSDNKI 152 (394)
T ss_pred ccCcccc--ccchhhcccccccccch
Confidence 5788887 6774 999999999974
No 48
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=26.98 E-value=34 Score=30.01 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=24.0
Q ss_pred eEEEecCCCCCcccCCCCCCccccccccc-ccccccCccCCeEeCCCCCC
Q 039136 82 VTQLSLNQKTKINYSDYNSYSYGVSFLNM-SLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 82 V~~L~L~~~~~~~l~~~~~~~~~~G~ip~-~l~~~~l~~L~~LdLs~N~l 130 (130)
+.+|.|.+++ + -+||. ++ ..|+.|++|||.+|-+
T Consensus 394 LrkL~l~gNq---l----------k~I~krAf--sgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 394 LRKLRLTGNQ---L----------KSIPKRAF--SGLEALEHLDLGDNAI 428 (873)
T ss_pred hhheeecCce---e----------eecchhhh--ccCcccceecCCCCcc
Confidence 4556666666 5 35664 45 7899999999998853
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=26.19 E-value=13 Score=32.13 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.5
Q ss_pred cccccccccccCccCCeEeCCCCCC
Q 039136 106 SFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 106 G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
-.||..+ ++|+.|.+|||+.|++
T Consensus 111 r~ip~~i--~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 111 RTIPEAI--CNLEALTFLDLSSNQL 133 (722)
T ss_pred eecchhh--hhhhHHHHhhhccchh
Confidence 4788889 9999999999999985
No 50
>PRK11289 ampC beta-lactamase/D-alanine carboxypeptidase; Provisional
Probab=23.94 E-value=1.3e+02 Score=24.25 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=13.8
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCC
Q 039136 1 MKMLLMKLSLWIGMALIQLHGYK 23 (130)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~ 23 (130)
|||++..++.+++++..+...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (384)
T PRK11289 2 MKMMLLLLLAALLLTASASAFAA 24 (384)
T ss_pred cchhhHHHHHHHHHHhhhccccc
Confidence 77777666666655555554444
No 51
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=23.59 E-value=68 Score=29.64 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=11.8
Q ss_pred ccccccccccCccCCeEeCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSD 127 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~ 127 (130)
.+|..+ ..+++|++|+|++
T Consensus 860 ~iP~si--~~l~~L~~L~L~~ 878 (1153)
T PLN03210 860 EVPWWI--EKFSNLSFLDMNG 878 (1153)
T ss_pred cChHHH--hcCCCCCEEECCC
Confidence 455555 6666666666665
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=23.27 E-value=31 Score=27.98 Aligned_cols=16 Identities=44% Similarity=0.524 Sum_probs=13.5
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
...++|++||||+|-|
T Consensus 89 ~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcCCceeEeecccccc
Confidence 4677999999999965
No 53
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=20.83 E-value=42 Score=27.94 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=12.3
Q ss_pred cccCccCCeEeCCCCCC
Q 039136 114 FHPFEELQRLDLSDKLV 130 (130)
Q Consensus 114 ~~~l~~L~~LdLs~N~l 130 (130)
|.++..|++|+|.+|++
T Consensus 318 f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYDNQI 334 (498)
T ss_pred hhccccceeeeecCCee
Confidence 36777777788877764
No 54
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.35 E-value=1.2e+02 Score=21.96 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=11.8
Q ss_pred ChhHHHHHHHHHHHHHHHhhc
Q 039136 1 MKMLLMKLSLWIGMALIQLHG 21 (130)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (130)
|+..||..++.+.++.+..+.
T Consensus 1 r~~s~~r~~~~v~lL~LagCa 21 (197)
T COG4764 1 RTPSMMRLVFAVVLLALAGCA 21 (197)
T ss_pred CCchhHHHHHHHHHHHHhhcc
Confidence 455666666666655554333
Done!