Query 039136
Match_columns 130
No_of_seqs 134 out of 1071
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 10:52:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.2 2.9E-11 9.8E-16 101.8 6.0 90 22-130 6-112 (768)
2 1ogq_A PGIP-2, polygalacturona 99.1 9.4E-11 3.2E-15 89.0 7.7 91 24-130 2-113 (313)
3 4eco_A Uncharacterized protein 99.0 6.5E-10 2.2E-14 91.9 6.7 81 25-129 27-116 (636)
4 4ecn_A Leucine-rich repeat pro 98.9 1.6E-09 5.4E-14 93.3 6.7 79 24-129 265-359 (876)
5 4fcg_A Uncharacterized protein 98.2 1.5E-07 5E-12 71.8 -0.1 92 24-130 23-139 (328)
6 3e6j_A Variable lymphocyte rec 96.9 0.00088 3E-08 48.1 4.3 61 64-130 16-100 (229)
7 2ifg_A High affinity nerve gro 96.5 0.0029 1E-07 47.6 4.9 59 66-130 7-92 (347)
8 2o6s_A Variable lymphocyte rec 96.5 0.0027 9.3E-08 44.4 4.0 60 65-130 5-88 (208)
9 2o6r_A Variable lymphocyte rec 96.4 0.0034 1.2E-07 42.9 4.0 60 65-130 5-88 (177)
10 3g39_A Variable lymphocyte rec 96.3 0.0039 1.3E-07 42.7 3.9 58 67-130 9-90 (170)
11 2z66_A Variable lymphocyte rec 96.2 0.0043 1.5E-07 45.8 4.2 50 65-129 5-63 (306)
12 2z81_A CD282 antigen, TOLL-lik 96.1 0.0047 1.6E-07 49.1 4.2 58 66-130 3-86 (549)
13 2o6q_A Variable lymphocyte rec 95.8 0.0052 1.8E-07 44.8 2.8 15 115-129 82-96 (270)
14 2wfh_A SLIT homolog 2 protein 95.4 0.015 5.3E-07 40.5 4.1 25 104-130 66-90 (193)
15 2v9t_B SLIT homolog 2 protein 95.2 0.021 7.1E-07 40.6 4.2 59 66-130 10-92 (220)
16 2ifg_A High affinity nerve gro 95.2 0.015 5E-07 43.8 3.5 22 107-130 94-115 (347)
17 2r9u_A Variable lymphocyte rec 95.1 0.015 5.3E-07 39.9 3.3 16 115-130 78-93 (174)
18 3rgz_A Protein brassinosteroid 95.1 0.015 5.1E-07 48.7 3.6 25 104-130 668-692 (768)
19 4ay9_X Follicle-stimulating ho 95.0 0.011 3.6E-07 44.9 2.4 49 67-130 9-66 (350)
20 1w8a_A SLIT protein; signaling 94.9 0.023 8E-07 39.4 3.8 15 115-129 99-113 (192)
21 2z80_A TOLL-like receptor 2, v 94.9 0.025 8.5E-07 42.6 4.2 60 64-130 27-112 (353)
22 3m19_A Variable lymphocyte rec 94.7 0.018 6.1E-07 41.5 2.8 25 104-130 71-95 (251)
23 3v47_A TOLL-like receptor 5B a 94.6 0.033 1.1E-06 43.1 4.2 46 80-130 30-91 (455)
24 2r9u_A Variable lymphocyte rec 94.6 0.03 1E-06 38.5 3.5 22 107-130 95-117 (174)
25 2je0_A Acidic leucine-rich nuc 94.5 0.031 1.1E-06 36.8 3.4 35 80-130 42-76 (149)
26 1w8a_A SLIT protein; signaling 94.2 0.041 1.4E-06 38.1 3.7 25 104-130 114-138 (192)
27 3g39_A Variable lymphocyte rec 93.9 0.043 1.5E-06 37.4 3.3 25 104-130 90-114 (170)
28 2ell_A Acidic leucine-rich nuc 93.7 0.034 1.2E-06 37.3 2.4 19 110-130 65-83 (168)
29 2v9t_B SLIT homolog 2 protein 93.7 0.054 1.9E-06 38.4 3.5 23 107-130 94-116 (220)
30 2wfh_A SLIT homolog 2 protein 93.6 0.06 2.1E-06 37.4 3.6 25 104-130 90-114 (193)
31 2v70_A SLIT-2, SLIT homolog 2 93.5 0.067 2.3E-06 37.9 3.7 15 115-129 126-140 (220)
32 1ogq_A PGIP-2, polygalacturona 93.4 0.036 1.2E-06 41.3 2.3 25 104-130 256-280 (313)
33 3rw6_A Nuclear RNA export fact 93.4 0.043 1.5E-06 41.0 2.6 37 80-130 170-208 (267)
34 3oja_A Leucine-rich immune mol 93.3 0.11 3.8E-06 41.3 5.1 56 70-130 111-181 (487)
35 2ft3_A Biglycan; proteoglycan, 93.1 0.091 3.1E-06 39.1 4.1 58 67-130 33-114 (332)
36 2je0_A Acidic leucine-rich nuc 93.0 0.039 1.3E-06 36.3 1.7 18 110-129 107-124 (149)
37 3e6j_A Variable lymphocyte rec 92.8 0.087 3E-06 37.5 3.4 22 107-130 126-147 (229)
38 2o6r_A Variable lymphocyte rec 92.7 0.099 3.4E-06 35.3 3.5 15 115-129 121-135 (177)
39 2v70_A SLIT-2, SLIT homolog 2 92.7 0.095 3.2E-06 37.1 3.5 24 105-130 94-117 (220)
40 1xku_A Decorin; proteoglycan, 92.5 0.13 4.4E-06 38.2 4.2 59 66-130 30-112 (330)
41 4g8a_A TOLL-like receptor 4; l 92.4 0.098 3.3E-06 41.7 3.6 16 115-130 539-554 (635)
42 1a9n_A U2A', U2A'; complex (nu 92.2 0.076 2.6E-06 36.0 2.4 15 115-129 110-124 (176)
43 4fcg_A Uncharacterized protein 92.2 0.12 4E-06 38.9 3.6 25 104-130 265-289 (328)
44 3rfe_A Platelet glycoprotein I 92.2 0.12 4E-06 34.2 3.2 36 81-130 32-67 (130)
45 4g8a_A TOLL-like receptor 4; l 92.1 0.11 3.8E-06 41.4 3.5 45 81-130 53-112 (635)
46 4ezg_A Putative uncharacterize 92.0 0.1 3.5E-06 36.0 3.0 15 115-129 133-147 (197)
47 3zyi_A Leucine-rich repeat-con 92.0 0.17 5.9E-06 39.4 4.5 56 70-130 56-135 (452)
48 3vq2_A TLR4, TOLL-like recepto 92.0 0.16 5.4E-06 40.7 4.4 46 80-130 32-92 (606)
49 3cvr_A Invasion plasmid antige 91.9 0.023 7.8E-07 46.7 -0.7 25 64-91 40-70 (571)
50 3m19_A Variable lymphocyte rec 91.8 0.14 4.8E-06 36.6 3.5 24 105-130 96-119 (251)
51 2ell_A Acidic leucine-rich nuc 91.5 0.06 2E-06 36.1 1.2 15 115-129 117-131 (168)
52 4glp_A Monocyte differentiatio 91.4 0.14 4.7E-06 37.9 3.2 35 81-129 146-180 (310)
53 2z7x_B TOLL-like receptor 1, v 91.1 0.15 5.2E-06 40.1 3.3 36 81-130 46-81 (520)
54 2o6s_A Variable lymphocyte rec 91.0 0.2 6.7E-06 34.7 3.5 16 115-130 121-136 (208)
55 1xku_A Decorin; proteoglycan, 90.9 0.19 6.5E-06 37.2 3.6 20 107-130 114-133 (330)
56 2z62_A TOLL-like receptor 4, v 90.8 0.2 6.9E-06 36.1 3.6 22 107-130 140-161 (276)
57 2xot_A Amphoterin-induced prot 90.8 0.18 6.2E-06 38.2 3.5 16 115-130 85-100 (361)
58 3oja_A Leucine-rich immune mol 90.8 0.18 6E-06 40.1 3.4 15 115-129 77-91 (487)
59 2id5_A Lingo-1, leucine rich r 90.7 0.29 9.8E-06 38.1 4.5 56 70-130 13-92 (477)
60 1a9n_A U2A', U2A'; complex (nu 90.6 0.17 5.8E-06 34.2 2.8 37 80-130 64-100 (176)
61 1wwl_A Monocyte differentiatio 90.6 0.17 5.8E-06 37.5 3.1 22 106-129 163-184 (312)
62 2ft3_A Biglycan; proteoglycan, 90.6 0.21 7.1E-06 37.1 3.5 20 107-130 116-135 (332)
63 4eco_A Uncharacterized protein 90.5 0.16 5.4E-06 41.7 3.0 36 80-129 249-284 (636)
64 1ozn_A Reticulon 4 receptor; N 90.3 0.23 7.8E-06 36.0 3.5 24 105-130 190-213 (285)
65 1dce_A Protein (RAB geranylger 90.3 0.2 7E-06 40.8 3.5 20 108-130 501-520 (567)
66 3a79_B TLR6, VLRB.59, TOLL-lik 90.3 0.22 7.6E-06 39.8 3.7 24 105-130 89-112 (562)
67 3o53_A Protein LRIM1, AGAP0063 90.0 0.14 4.7E-06 38.1 2.1 15 115-129 77-91 (317)
68 2z80_A TOLL-like receptor 2, v 89.9 0.25 8.5E-06 37.0 3.5 22 107-130 114-136 (353)
69 2z66_A Variable lymphocyte rec 89.9 0.26 8.8E-06 36.0 3.5 15 115-129 220-234 (306)
70 3v47_A TOLL-like receptor 5B a 89.8 0.24 8.4E-06 38.1 3.5 23 105-129 360-382 (455)
71 4b8c_D Glucose-repressible alc 89.7 0.19 6.6E-06 42.1 3.0 45 80-130 270-328 (727)
72 4b8c_D Glucose-repressible alc 89.6 0.23 7.9E-06 41.6 3.4 22 107-130 284-305 (727)
73 2z62_A TOLL-like receptor 4, v 89.5 0.31 1.1E-05 35.1 3.6 23 106-130 66-88 (276)
74 1p9a_G Platelet glycoprotein I 89.4 0.55 1.9E-05 34.5 5.0 16 115-130 121-136 (290)
75 2z81_A CD282 antigen, TOLL-lik 89.3 0.28 9.6E-06 38.7 3.5 25 104-130 86-110 (549)
76 2z7x_B TOLL-like receptor 1, v 89.1 0.36 1.2E-05 37.9 4.0 21 107-129 365-385 (520)
77 3vq2_A TLR4, TOLL-like recepto 89.1 0.28 9.7E-06 39.3 3.5 25 104-130 509-533 (606)
78 4ezg_A Putative uncharacterize 88.8 0.24 8.3E-06 34.1 2.5 15 115-129 109-123 (197)
79 3rfs_A Internalin B, repeat mo 88.7 0.36 1.2E-05 34.9 3.5 15 115-129 154-168 (272)
80 3rfs_A Internalin B, repeat mo 88.7 0.36 1.2E-05 34.9 3.5 16 115-130 130-145 (272)
81 1p9a_G Platelet glycoprotein I 88.7 0.36 1.2E-05 35.5 3.6 23 107-130 138-160 (290)
82 4glp_A Monocyte differentiatio 88.6 0.23 7.8E-06 36.6 2.4 24 105-130 237-263 (310)
83 1ozn_A Reticulon 4 receptor; N 88.6 0.37 1.3E-05 34.8 3.5 15 115-129 150-164 (285)
84 3t6q_A CD180 antigen; protein- 88.5 0.35 1.2E-05 38.7 3.6 45 81-130 34-93 (606)
85 4ay9_X Follicle-stimulating ho 88.5 0.42 1.4E-05 35.9 3.9 25 105-130 190-214 (350)
86 2xwt_C Thyrotropin receptor; s 88.5 0.46 1.6E-05 33.5 3.9 11 81-91 32-42 (239)
87 3a79_B TLR6, VLRB.59, TOLL-lik 88.5 0.42 1.4E-05 38.2 4.0 21 108-130 395-415 (562)
88 2xot_A Amphoterin-induced prot 88.4 0.38 1.3E-05 36.4 3.6 15 115-129 133-147 (361)
89 2id5_A Lingo-1, leucine rich r 88.4 0.35 1.2E-05 37.6 3.5 23 107-130 94-116 (477)
90 3o53_A Protein LRIM1, AGAP0063 88.3 0.78 2.7E-05 33.9 5.2 15 116-130 167-181 (317)
91 3zyi_A Leucine-rich repeat-con 88.1 0.38 1.3E-05 37.4 3.5 22 107-130 137-159 (452)
92 1dce_A Protein (RAB geranylger 88.0 0.29 9.8E-06 39.9 2.8 46 80-130 486-545 (567)
93 1ziw_A TOLL-like receptor 3; i 87.8 0.55 1.9E-05 38.2 4.4 46 80-130 25-85 (680)
94 2o6q_A Variable lymphocyte rec 87.8 0.45 1.5E-05 34.3 3.5 15 115-129 154-168 (270)
95 1xeu_A Internalin C; cellular 87.7 0.42 1.5E-05 34.6 3.3 35 80-130 63-97 (263)
96 3j0a_A TOLL-like receptor 5; m 87.6 0.32 1.1E-05 41.1 3.0 54 70-130 16-85 (844)
97 3o6n_A APL1; leucine-rich repe 87.5 0.4 1.4E-05 36.3 3.2 24 105-130 261-284 (390)
98 3zyj_A Leucine-rich repeat-con 87.4 0.46 1.6E-05 36.8 3.5 16 115-130 252-267 (440)
99 3o6n_A APL1; leucine-rich repe 87.3 0.47 1.6E-05 35.9 3.5 15 115-129 138-152 (390)
100 4ecn_A Leucine-rich repeat pro 87.2 0.34 1.2E-05 41.7 2.9 36 80-129 491-526 (876)
101 3t6q_A CD180 antigen; protein- 87.2 0.47 1.6E-05 38.0 3.6 24 105-130 489-512 (606)
102 2xwt_C Thyrotropin receptor; s 86.7 0.79 2.7E-05 32.2 4.2 23 107-130 194-217 (239)
103 3oja_B Anopheles plasmodium-re 86.5 0.48 1.6E-05 38.3 3.3 25 104-130 266-290 (597)
104 2z63_A TOLL-like receptor 4, v 86.4 0.53 1.8E-05 37.1 3.5 15 115-129 515-529 (570)
105 1wwl_A Monocyte differentiatio 86.2 0.55 1.9E-05 34.6 3.3 19 109-130 290-308 (312)
106 2z63_A TOLL-like receptor 4, v 86.1 0.6 2E-05 36.9 3.6 24 105-130 65-88 (570)
107 3zyj_A Leucine-rich repeat-con 85.9 0.61 2.1E-05 36.1 3.5 45 81-130 186-243 (440)
108 1xeu_A Internalin C; cellular 85.5 0.59 2E-05 33.8 3.1 35 80-130 41-75 (263)
109 3oja_B Anopheles plasmodium-re 85.4 0.66 2.3E-05 37.5 3.6 15 115-129 120-134 (597)
110 4fmz_A Internalin; leucine ric 85.0 0.39 1.3E-05 35.6 2.0 15 115-129 308-322 (347)
111 1ds9_A Outer arm dynein; leuci 84.7 0.058 2E-06 37.3 -2.6 34 81-130 49-82 (198)
112 1h6u_A Internalin H; cell adhe 84.7 0.74 2.5E-05 34.0 3.4 16 115-130 104-119 (308)
113 3j0a_A TOLL-like receptor 5; m 84.6 0.66 2.3E-05 39.2 3.4 25 104-130 109-135 (844)
114 3cvr_A Invasion plasmid antige 84.3 0.78 2.7E-05 37.5 3.6 22 107-130 221-242 (571)
115 3g06_A SSPH2 (leucine-rich rep 83.6 0.86 3E-05 37.6 3.6 22 107-130 275-296 (622)
116 1h6t_A Internalin B; cell adhe 83.5 0.88 3E-05 33.3 3.3 16 115-130 109-124 (291)
117 1ziw_A TOLL-like receptor 3; i 82.6 0.6 2.1E-05 37.9 2.3 22 107-130 87-109 (680)
118 1jl5_A Outer protein YOPM; leu 82.4 1 3.4E-05 35.4 3.4 23 104-130 143-165 (454)
119 2ca6_A RAN GTPase-activating p 82.1 0.6 2E-05 35.3 1.9 22 106-129 234-255 (386)
120 1h6t_A Internalin B; cell adhe 81.7 1.1 3.7E-05 32.9 3.2 16 115-130 175-190 (291)
121 1jl5_A Outer protein YOPM; leu 81.5 0.48 1.6E-05 37.3 1.3 22 107-130 374-408 (454)
122 2ca6_A RAN GTPase-activating p 81.0 0.58 2E-05 35.4 1.5 39 80-130 94-134 (386)
123 4fmz_A Internalin; leucine ric 80.7 0.95 3.2E-05 33.4 2.6 23 104-130 323-345 (347)
124 2ast_B S-phase kinase-associat 80.2 0.68 2.3E-05 34.0 1.6 22 105-128 131-152 (336)
125 3bz5_A Internalin-J, INLJ; leu 80.1 1.4 4.7E-05 34.6 3.5 16 115-130 82-97 (457)
126 1h6u_A Internalin H; cell adhe 78.2 1.7 5.8E-05 32.0 3.3 15 115-129 192-206 (308)
127 1m9s_A Internalin B; cell inva 78.0 1.5 5E-05 36.1 3.1 16 115-130 172-187 (605)
128 1z7x_W Ribonuclease inhibitor; 77.8 0.73 2.5E-05 35.4 1.2 22 107-130 389-410 (461)
129 3bz5_A Internalin-J, INLJ; leu 76.5 1.8 6.1E-05 34.0 3.1 16 115-130 230-245 (457)
130 2ast_B S-phase kinase-associat 76.3 2.1 7.2E-05 31.3 3.4 23 104-128 235-257 (336)
131 1z7x_W Ribonuclease inhibitor; 76.1 1.1 3.9E-05 34.3 1.9 40 81-130 86-125 (461)
132 1o6v_A Internalin A; bacterial 75.6 2.1 7.2E-05 33.2 3.3 16 115-130 109-124 (466)
133 1m9s_A Internalin B; cell inva 73.4 2.4 8.3E-05 34.7 3.2 16 115-130 106-121 (605)
134 3goz_A Leucine-rich repeat-con 72.9 1 3.5E-05 33.9 0.9 13 118-130 109-121 (362)
135 1ds9_A Outer arm dynein; leuci 72.9 0.24 8.3E-06 34.1 -2.5 22 107-130 84-105 (198)
136 3goz_A Leucine-rich repeat-con 71.5 1.6 5.6E-05 32.7 1.7 36 81-130 52-92 (362)
137 1o6v_A Internalin A; bacterial 70.8 3.2 0.00011 32.2 3.3 15 115-129 87-101 (466)
138 3un9_A NLR family member X1; l 59.0 3.6 0.00012 31.4 1.5 14 116-129 181-194 (372)
139 3rw6_A Nuclear RNA export fact 58.2 8.6 0.0003 28.3 3.4 35 80-130 196-232 (267)
140 3un9_A NLR family member X1; l 57.7 3.6 0.00012 31.5 1.3 14 116-129 237-250 (372)
141 3ogk_B Coronatine-insensitive 52.8 4.2 0.00014 32.1 1.0 10 82-91 465-474 (592)
142 3g06_A SSPH2 (leucine-rich rep 52.1 9.4 0.00032 31.4 3.0 11 81-91 41-51 (622)
143 3sb4_A Hypothetical leucine ri 50.9 11 0.00039 27.5 3.1 34 81-128 227-260 (329)
144 3ogk_B Coronatine-insensitive 49.4 2.8 9.5E-05 33.2 -0.6 38 80-130 488-525 (592)
145 2ra8_A Uncharacterized protein 46.3 5.5 0.00019 30.5 0.6 21 108-130 299-319 (362)
146 1io0_A Tropomodulin; LRR prote 43.2 15 0.00051 24.8 2.5 15 115-129 118-134 (185)
147 3sb4_A Hypothetical leucine ri 37.7 18 0.0006 26.5 2.3 34 81-129 102-135 (329)
148 3e4g_A ATP synthase subunit S, 34.7 31 0.001 23.7 3.0 35 80-128 61-95 (176)
149 2p1m_B Transport inhibitor res 30.6 9 0.00031 30.1 -0.4 12 117-128 505-516 (594)
150 2p1m_B Transport inhibitor res 25.5 19 0.00065 28.2 0.7 38 80-130 456-493 (594)
151 1pgv_A TMD-1, tropomodulin TMD 21.2 35 0.0012 23.9 1.3 11 81-91 71-81 (197)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.16 E-value=2.9e-11 Score=101.80 Aligned_cols=90 Identities=19% Similarity=0.283 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHHhcccccCCCCCCccCCCCCCCCCCCCCCCCCCceEEecCCCCceEEEecCCCCCcccCCC---
Q 039136 22 YKACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCNDWEGVKCNATTLRVTQLSLNQKTKINYSDY--- 98 (130)
Q Consensus 22 ~~~~~~~~~~aL~~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~~C~~W~GV~C~~~~~rV~~L~L~~~~~~~l~~~--- 98 (130)
+....+.|+.||++||+.+. ++. .+.+|.. + .+||. |.||.|+ .++|++|+|++.+ ++|.
T Consensus 6 ~~~~~~~~~~all~~k~~~~----~~~---~l~~W~~--~--~~~C~-w~gv~C~--~~~v~~L~L~~~~---l~g~~~~ 68 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP----DKN---LLPDWSS--N--KNPCT-FDGVTCR--DDKVTSIDLSSKP---LNVGFSA 68 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS----CTT---SSTTCCT--T--SCGGG-STTEEEE--TTEEEEEECTTSC---CCEEHHH
T ss_pred cccCCHHHHHHHHHHHhhCC----Ccc---cccCCCC--C--CCCcC-CcceEEC--CCcEEEEECCCCC---cCCccCc
Confidence 34446779999999999986 664 5789975 3 68999 9999998 4899999999988 7541
Q ss_pred -----------C-CCccccccc--ccccccccCccCCeEeCCCCCC
Q 039136 99 -----------N-SYSYGVSFL--NMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 99 -----------~-~~~~~~G~i--p~~l~~~~l~~L~~LdLs~N~l 130 (130)
. ......|.+ |..+ +.+++|++|||++|.+
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~--~~l~~L~~L~Ls~n~l 112 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGF--KCSASLTSLDLSRNSL 112 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCC--CCCTTCCEEECCSSEE
T ss_pred cChhHhccCcccccCCcCCCcCCCchhh--ccCCCCCEEECCCCcC
Confidence 0 000122333 3677 8899999999998864
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.14 E-value=9.4e-11 Score=89.01 Aligned_cols=91 Identities=31% Similarity=0.497 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHhcccccCCCCCCccCCCCCCCCCCCCCCCC-CCceEEecCCC--CceEEEecCCCCCcccCC--C
Q 039136 24 ACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDGMSSDCCN-DWEGVKCNATT--LRVTQLSLNQKTKINYSD--Y 98 (130)
Q Consensus 24 ~~~~~~~~aL~~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~~C~-~W~GV~C~~~~--~rV~~L~L~~~~~~~l~~--~ 98 (130)
.|.+.|+.+|++||+.+. ++. .+.+|... .+||. .|.||.|+... ++|++|++.+++ +++ .
T Consensus 2 ~c~~~~~~aL~~~k~~~~----~~~---~l~~W~~~----~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~---l~~~~~ 67 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG----NPT---TLSSWLPT----TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN---LPKPYP 67 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT----CCG---GGTTCCTT----SCTTTTCSTTEEECCSSSCCCEEEEEEECCC---CSSCEE
T ss_pred CCCHHHHHHHHHHHHhcC----Ccc---cccCCCCC----CCCCcCCCcceEeCCCCCCceEEEEECCCCC---ccCCcc
Confidence 588899999999999986 553 57889762 57774 39999998644 799999999998 754 1
Q ss_pred -----------C----C-CcccccccccccccccCccCCeEeCCCCCC
Q 039136 99 -----------N----S-YSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 99 -----------~----~-~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
. . ++.+.|.+|..+ +++++|++|+|++|++
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l 113 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNV 113 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECC
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCCee
Confidence 0 1 133556777777 7777777777777654
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.98 E-value=6.5e-10 Score=91.90 Aligned_cols=81 Identities=23% Similarity=0.145 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhcccccCCCCCC------ccCCCCCCCCCCCCCCCCCC---ceEEecCCCCceEEEecCCCCCccc
Q 039136 25 CVETKRIALLEIKSFFISASDVGFDD------EILSSWFDDDGMSSDCCNDW---EGVKCNATTLRVTQLSLNQKTKINY 95 (130)
Q Consensus 25 ~~~~~~~aL~~~k~~l~~~~~~~~~~------~~l~~W~~~~~~~~~~C~~W---~GV~C~~~~~rV~~L~L~~~~~~~l 95 (130)
....|+.||.+++..+. ++.-. ....+|+. + .+||. | .||.|+.. +||++|+|.+++ +
T Consensus 27 ~~~~d~~aL~~~~~~~~----~~~w~~~~~~~~~~~~W~~--~--~~~c~-w~~~~GV~C~~~-~~V~~L~L~~~~---l 93 (636)
T 4eco_A 27 EYIKDYLALKEIWDALN----GKNWSQQGFGTQPGANWNF--N--KELDM-WGAQPGVSLNSN-GRVTGLSLEGFG---A 93 (636)
T ss_dssp HHHHHHHHHHHHHHHTT----GGGCCCCC------CCCCC--S--SCGGG-TTCCTTEEECTT-CCEEEEECTTSC---C
T ss_pred hHHHHHHHHHHHHHHcC----CCCcccCCcCCccCCCCCC--C--CCccc-ccCCCCeEEcCC-CCEEEEEecCcc---c
Confidence 33568999999999875 22100 01236876 2 68999 9 99999864 899999999999 7
Q ss_pred CCCCCCcccccccccccccccCccCCeEeCCCCC
Q 039136 96 SDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 96 ~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
+|.+|+++ ++|++|++|||++|.
T Consensus 94 ---------~g~lp~~l--~~L~~L~~L~Ls~N~ 116 (636)
T 4eco_A 94 ---------SGRVPDAI--GQLTELEVLALGSHG 116 (636)
T ss_dssp ---------EEEECGGG--GGCTTCCEEESCCGG
T ss_pred ---------CCcCChHH--hcCccceEEECcCCc
Confidence 69999999 999999999999995
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=1.6e-09 Score=93.27 Aligned_cols=79 Identities=24% Similarity=0.216 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHhcccccCCCCCCccCCCCCCCCC-CCCCC--CCCC------------ceEEecCCCCceEEEecC
Q 039136 24 ACVETKRIALLEIKSFFISASDVGFDDEILSSWFDDDG-MSSDC--CNDW------------EGVKCNATTLRVTQLSLN 88 (130)
Q Consensus 24 ~~~~~~~~aL~~~k~~l~~~~~~~~~~~~l~~W~~~~~-~~~~~--C~~W------------~GV~C~~~~~rV~~L~L~ 88 (130)
.+...|+.||++||..+. ++ +|+..++ ...+| |. | .||.|+. .+||++|+|.
T Consensus 265 ~~~~~d~~ALl~~k~~l~----~~-------~W~~~~~~~~~~~~~C~-W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls 331 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALD----GK-------NWRYYSGTINNTIHSLN-WNFNKELDMWGDQPGVDLDN-NGRVTGLSLA 331 (876)
T ss_dssp CHHHHHHHHHHHHHHHTT----GG-------GCCCCCSSCSSCCCCCS-CCCSSCGGGTTCCTTEEECT-TSCEEEEECT
T ss_pred ccchHHHHHHHHHHHHcC----CC-------CCCcCCCcccccCCccc-cccccccccccCcCceEecC-CCCEEEEECc
Confidence 345679999999999985 32 5765210 00245 99 9 9999986 5899999999
Q ss_pred CCCCcccCCCCCCcccccccccccccccCccCCeEeC-CCCC
Q 039136 89 QKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDL-SDKL 129 (130)
Q Consensus 89 ~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdL-s~N~ 129 (130)
+++ + +|.+|+++ ++|++|++||| ++|.
T Consensus 332 ~~~---L---------~G~ip~~l--~~L~~L~~LdLss~N~ 359 (876)
T 4ecn_A 332 GFG---A---------KGRVPDAI--GQLTELKVLSFGTHSE 359 (876)
T ss_dssp TTC---C---------EEEECGGG--GGCTTCCEEESCCTTH
T ss_pred cCC---C---------CCcCchHH--hccccceEeeeccccc
Confidence 999 7 69999999 99999999999 7774
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.22 E-value=1.5e-07 Score=71.85 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHhcccccCCCCCCccCCCCC---CCCCCCCCCCCCCceEEecC--------CCCceEEEecCCCCC
Q 039136 24 ACVETKRIALLEIKSFFISASDVGFDDEILSSWF---DDDGMSSDCCNDWEGVKCNA--------TTLRVTQLSLNQKTK 92 (130)
Q Consensus 24 ~~~~~~~~aL~~~k~~l~~~~~~~~~~~~l~~W~---~~~~~~~~~C~~W~GV~C~~--------~~~rV~~L~L~~~~~ 92 (130)
....+++.+|.+||..+. .++.+ ....|. .. . .++|. |.|+.|+. ...+|+.|++.+++
T Consensus 23 ~~~~~~~~aLl~~k~~~~---~~~~~--~~~~w~~~~~~-~--~~~~~-~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~- 92 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYN---ADRNR--WHSAWRQANSN-N--PQIET-RTGRALKATADLLEDATQPGRVALELRSVP- 92 (328)
T ss_dssp CCCCCHHHHHHHHHHHHH---HCCTT--HHHHHHHHTTT-C--TTSCC-SHHHHHHHHHHHHHHHTSTTCCEEEEESSC-
T ss_pred ccCchHHHHHHHHHHhcc---CCchh--hhhhhcccccc-c--ccccc-cCCcchhhhHHHHhcccccceeEEEccCCC-
Confidence 344578899999999874 14433 566784 21 2 57899 99999952 24689999999888
Q ss_pred cccCCCC--------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136 93 INYSDYN--------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 93 ~~l~~~~--------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++... .++.++ .+|..+ +.+++|++|||++|++
T Consensus 93 --l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~--~~l~~L~~L~Ls~n~l 139 (328)
T 4fcg_A 93 --LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM--QQFAGLETLTLARNPL 139 (328)
T ss_dssp --CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG--GGGTTCSEEEEESCCC
T ss_pred --chhcChhhhhCCCCCEEECCCCCcc-chhHHH--hccCCCCEEECCCCcc
Confidence 53210 112233 667666 7777777777777764
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.91 E-value=0.00088 Score=48.14 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=38.6
Q ss_pred CCCCCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCcc
Q 039136 64 SDCCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEE 119 (130)
Q Consensus 64 ~~~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~ 119 (130)
...|. |.+|.|... ...+..|++.++. +++.. .++.+ ..+|+.. |..+++
T Consensus 16 ~~~Cs-~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~-~~~l~~ 89 (229)
T 3e6j_A 16 QCSCS-GTTVDCRSKRHASVPAGIPTNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLGSNQL-GALPVGV-FDSLTQ 89 (229)
T ss_dssp TCEEE-TTEEECTTSCCSSCCSCCCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTT-TTTCTT
T ss_pred CCEEe-CCEeEccCCCcCccCCCCCCCCCEEEcCCCc---cCccCHHHhhCccCCcEEECCCCCC-CCcChhh-cccCCC
Confidence 57899 999999752 1346778888887 64321 11112 3444432 367788
Q ss_pred CCeEeCCCCCC
Q 039136 120 LQRLDLSDKLV 130 (130)
Q Consensus 120 L~~LdLs~N~l 130 (130)
|++|||++|++
T Consensus 90 L~~L~Ls~N~l 100 (229)
T 3e6j_A 90 LTVLDLGTNQL 100 (229)
T ss_dssp CCEEECCSSCC
T ss_pred cCEEECCCCcC
Confidence 88888887764
No 7
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.54 E-value=0.0029 Score=47.64 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=39.4
Q ss_pred CCCCCceEEecCC-----------CCceEEEecCC-CCCcccCCC---------------CCCcccccccccccccccCc
Q 039136 66 CCNDWEGVKCNAT-----------TLRVTQLSLNQ-KTKINYSDY---------------NSYSYGVSFLNMSLLFHPFE 118 (130)
Q Consensus 66 ~C~~W~GV~C~~~-----------~~rV~~L~L~~-~~~~~l~~~---------------~~~~~~~G~ip~~l~~~~l~ 118 (130)
.|. |..|.|... ..++..|+|.+ +. +++. -.++.+++..|..+ ..|+
T Consensus 7 ~C~-~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~ 80 (347)
T 2ifg_A 7 PHG-SSGLRCTRDGALDSLHHLPGAENLTELYIENQQH---LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF--HFTP 80 (347)
T ss_dssp CSS-SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECCSSCCCEECTTGG--GSCS
T ss_pred ccc-CCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCC---CCCcChhHhccccCCCEEECCCCccceeCHHHh--cCCc
Confidence 377 888888653 12377888885 66 4331 02333666666666 8888
Q ss_pred cCCeEeCCCCCC
Q 039136 119 ELQRLDLSDKLV 130 (130)
Q Consensus 119 ~L~~LdLs~N~l 130 (130)
+|++|||++|+|
T Consensus 81 ~L~~L~l~~N~l 92 (347)
T 2ifg_A 81 RLSRLNLSFNAL 92 (347)
T ss_dssp CCCEEECCSSCC
T ss_pred CCCEEeCCCCcc
Confidence 888888888875
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.46 E-value=0.0027 Score=44.45 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=36.6
Q ss_pred CCCCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccC
Q 039136 65 DCCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEEL 120 (130)
Q Consensus 65 ~~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L 120 (130)
..|. |.++.|... ..+++.|++.++. +++.. .++.++ .+|+.. |..+++|
T Consensus 5 C~C~-~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~-~~~l~~L 78 (208)
T 2o6s_A 5 CSCS-GTTVECYSQGRTSVPTGIPAQTTYLDLETNS---LKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGV-FNKLTSL 78 (208)
T ss_dssp CEEE-TTEEECCSSCCSSCCSCCCTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTT-TTTCTTC
T ss_pred CEEC-CCEEEecCCCccCCCCCCCCCCcEEEcCCCc---cCcCChhhhcccccCcEEECCCCccC-ccChhh-cCCCCCc
Confidence 4577 999999652 1257788888877 54310 111233 334332 2677888
Q ss_pred CeEeCCCCCC
Q 039136 121 QRLDLSDKLV 130 (130)
Q Consensus 121 ~~LdLs~N~l 130 (130)
++|+|++|++
T Consensus 79 ~~L~Ls~n~l 88 (208)
T 2o6s_A 79 TYLNLSTNQL 88 (208)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCcC
Confidence 8888887764
No 9
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.36 E-value=0.0034 Score=42.85 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=35.0
Q ss_pred CCCCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccC
Q 039136 65 DCCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEEL 120 (130)
Q Consensus 65 ~~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L 120 (130)
..|. |.++.|... ...++.|++.++. +++.. .++.+++..+..+ ..+++|
T Consensus 5 C~C~-~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L 78 (177)
T 2o6r_A 5 CSCS-GTEIRCNSKGLTSVPTGIPSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF--DKLTKL 78 (177)
T ss_dssp CEEE-TTEEECCSSCCSSCCTTCCTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTC
T ss_pred CEeC-CCEEEecCCCCccCCCCCCCCCcEEEeCCCc---ccEeCHHHhcCcccccEEECCCCcceEeChhHc--cCCCcc
Confidence 3467 999998642 1356778888777 53310 1122332222334 677778
Q ss_pred CeEeCCCCCC
Q 039136 121 QRLDLSDKLV 130 (130)
Q Consensus 121 ~~LdLs~N~l 130 (130)
++|+|++|++
T Consensus 79 ~~L~l~~N~l 88 (177)
T 2o6r_A 79 TILYLHENKL 88 (177)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCCc
Confidence 8888877764
No 10
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.28 E-value=0.0039 Score=42.74 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=32.3
Q ss_pred CCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCe
Q 039136 67 CNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQR 122 (130)
Q Consensus 67 C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~ 122 (130)
|. |..+.|... ...+..|+|.++. +++.. .++.++ .+|+.. |..+++|++
T Consensus 9 C~-~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~-f~~l~~L~~ 82 (170)
T 3g39_A 9 CS-GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGV-FDKLTQLTQ 82 (170)
T ss_dssp EE-TTEEECTTSCCSSCCSCCCTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTT-TTTCTTCCE
T ss_pred cC-CCEEEeCCCCcCccCccCCCCCcEEEcCCCc---CCccChhhhcCcccCCEEECCCCCcC-ccChhh-ccCCCCCCE
Confidence 55 777777541 1346677777777 54320 112233 333332 267777777
Q ss_pred EeCCCCCC
Q 039136 123 LDLSDKLV 130 (130)
Q Consensus 123 LdLs~N~l 130 (130)
|+|++|+|
T Consensus 83 L~L~~N~l 90 (170)
T 3g39_A 83 LSLNDNQL 90 (170)
T ss_dssp EECCSSCC
T ss_pred EECCCCcc
Confidence 77777764
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=96.24 E-value=0.0043 Score=45.83 Aligned_cols=50 Identities=24% Similarity=0.434 Sum_probs=30.4
Q ss_pred CCCCCCceEEecCC---------CCceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCC
Q 039136 65 DCCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 65 ~~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
..|. |.++.|... ...++.|++.++. ++ .+|... |.++++|++|+|++|+
T Consensus 5 C~C~-~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~---l~----------~i~~~~-~~~l~~L~~L~L~~n~ 63 (306)
T 2z66_A 5 CSCS-GTEIRCNSKGLTSVPTGIPSSATRLELESNK---LQ----------SLPHGV-FDKLTQLTKLSLSSNG 63 (306)
T ss_dssp CEEE-TTEEECCSSCCSSCCSCCCTTCCEEECCSSC---CC----------CCCTTT-TTTCTTCSEEECCSSC
T ss_pred CeeC-CCEEEcCCCCcccCCCCCCCCCCEEECCCCc---cC----------ccCHhH-hhccccCCEEECCCCc
Confidence 3478 999999752 1357788888877 52 344332 2455555555555554
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=96.13 E-value=0.0047 Score=49.08 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=36.1
Q ss_pred CCCCCceEEecCC-----------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCcc
Q 039136 66 CCNDWEGVKCNAT-----------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEE 119 (130)
Q Consensus 66 ~C~~W~GV~C~~~-----------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~ 119 (130)
.|. |.|+ |+.. ..+++.|+++++. +++.. ..+.+++..|..+ +.+++
T Consensus 3 ~C~-~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~ 75 (549)
T 2z81_A 3 SCD-ASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNK---ITYIGHGDLRACANLQVLILKSSRINTIEGDAF--YSLGS 75 (549)
T ss_dssp EEC-TTSE-EECTTSCCSSCCSCCCTTCCEEECCSSC---CCEECSSTTSSCTTCCEEECTTSCCCEECTTTT--TTCTT
T ss_pred cCC-CCce-EECCCCccccccccCCCCccEEECcCCc---cCccChhhhhcCCcccEEECCCCCcCccChhhc--ccccc
Confidence 477 8887 7632 1357888888877 54210 1122445555566 77888
Q ss_pred CCeEeCCCCCC
Q 039136 120 LQRLDLSDKLV 130 (130)
Q Consensus 120 L~~LdLs~N~l 130 (130)
|++|||++|++
T Consensus 76 L~~L~Ls~n~l 86 (549)
T 2z81_A 76 LEHLDLSDNHL 86 (549)
T ss_dssp CCEEECTTSCC
T ss_pred CCEEECCCCcc
Confidence 88888888764
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=95.78 E-value=0.0052 Score=44.83 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=8.4
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|+|++|.
T Consensus 82 ~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 82 KELKNLETLWVTDNK 96 (270)
T ss_dssp SSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCc
Confidence 455555555555554
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.43 E-value=0.015 Score=40.54 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=16.2
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+++..+..+ ..+++|++|+|++|++
T Consensus 66 i~~i~~~~f--~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 66 ISTLSNQSF--SNMTQLLTLILSYNRL 90 (193)
T ss_dssp CCCCCTTTT--TTCTTCCEEECCSSCC
T ss_pred CCEeCHhHc--cCCCCCCEEECCCCcc
Confidence 344334455 7778888888887764
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=95.17 E-value=0.021 Score=40.59 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=38.2
Q ss_pred CCCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCC
Q 039136 66 CCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQ 121 (130)
Q Consensus 66 ~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~ 121 (130)
.|. |..+.|... ...++.|++.++. +++.. .++.+++..|..+ ..+++|+
T Consensus 10 ~C~-~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~---i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~ 83 (220)
T 2v9t_B 10 TCS-NNIVDCRGKGLTEIPTNLPETITEIRLEQNT---IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLN 83 (220)
T ss_dssp EEE-TTEEECTTSCCSSCCSSCCTTCCEEECCSSC---CCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCC
T ss_pred EEC-CCEEEcCCCCcCcCCCccCcCCCEEECCCCc---CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCC
Confidence 366 888888642 1257788888877 53210 1222455556666 8888888
Q ss_pred eEeCCCCCC
Q 039136 122 RLDLSDKLV 130 (130)
Q Consensus 122 ~LdLs~N~l 130 (130)
+|+|++|++
T Consensus 84 ~L~Ls~N~l 92 (220)
T 2v9t_B 84 SLVLYGNKI 92 (220)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcC
Confidence 888888875
No 16
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.16 E-value=0.015 Score=43.75 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=15.9
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|+.+ |..++ |++|+|++|.|
T Consensus 94 ~~~~~~-~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 94 SLSWKT-VQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCCSTT-TCSCC-CCEEECCSSCC
T ss_pred eeCHHH-cccCC-ceEEEeeCCCc
Confidence 456554 35555 99999999975
No 17
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.13 E-value=0.015 Score=39.92 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=11.6
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
..+++|++|||++|+|
T Consensus 78 ~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHL 93 (174)
T ss_dssp TTCTTCCEEECCSSCC
T ss_pred CCcchhhEEECCCCcc
Confidence 6777777777777764
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=95.07 E-value=0.015 Score=48.74 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=16.2
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++|.||.++ +++++|++||||+|++
T Consensus 668 l~g~ip~~l--~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 668 ISGSIPDEV--GDLRGLNILDLSSNKL 692 (768)
T ss_dssp CCSCCCGGG--GGCTTCCEEECCSSCC
T ss_pred cCCCCChHH--hCCCCCCEEECCCCcc
Confidence 566666666 6666666666666654
No 19
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.03 E-value=0.011 Score=44.90 Aligned_cols=49 Identities=16% Similarity=0.372 Sum_probs=36.1
Q ss_pred CCCCceEEecCC---------CCceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 67 CNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 67 C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
|. +..|.|... ...+++|+|.++. + ..||+.. |.+|++|++|||++|++
T Consensus 9 C~-~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~---i----------~~i~~~~-f~~l~~L~~L~Ls~N~i 66 (350)
T 4ay9_X 9 CS-NRVFLCQESKVTEIPSDLPRNAIELRFVLTK---L----------RVIQKGA-FSGFGDLEKIEISQNDV 66 (350)
T ss_dssp EE-TTEEEEESTTCCSCCTTCCTTCSEEEEESCC---C----------SEECTTS-STTCTTCCEEEEECCTT
T ss_pred ee-CCEEEecCCCCCccCcCcCCCCCEEEccCCc---C----------CCcCHHH-HcCCCCCCEEECcCCCC
Confidence 77 888999642 1246778888887 6 3677643 38999999999999974
No 20
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=94.92 E-value=0.023 Score=39.39 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=8.4
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|||++|+
T Consensus 99 ~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQ 113 (192)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCc
Confidence 555555555555554
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=94.92 E-value=0.025 Score=42.62 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=36.2
Q ss_pred CCCCCCCceEEecCC-----------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccC
Q 039136 64 SDCCNDWEGVKCNAT-----------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPF 117 (130)
Q Consensus 64 ~~~C~~W~GV~C~~~-----------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l 117 (130)
..+|. |.|+ |+.. ...++.|++.++. +++.. ..+.+++..|..+ .++
T Consensus 27 ~~~C~-~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l 99 (353)
T 2z80_A 27 SLSCD-RNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLTSNGINTIEEDSF--SSL 99 (353)
T ss_dssp CCEEC-TTSE-EECCSTTCSSCCTTCCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTC
T ss_pred CCCCC-CCeE-eeCCCCCcccccccccccCcEEECCCCc---CcccCHHHhccCCCCCEEECCCCccCccCHhhc--CCC
Confidence 45677 8876 6421 1257788888877 53210 1122444445556 778
Q ss_pred ccCCeEeCCCCCC
Q 039136 118 EELQRLDLSDKLV 130 (130)
Q Consensus 118 ~~L~~LdLs~N~l 130 (130)
++|++|||++|++
T Consensus 100 ~~L~~L~Ls~n~l 112 (353)
T 2z80_A 100 GSLEHLDLSYNYL 112 (353)
T ss_dssp TTCCEEECCSSCC
T ss_pred CCCCEEECCCCcC
Confidence 8888888888764
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=94.71 E-value=0.018 Score=41.48 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=15.5
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+++..|..+ ..+++|++|+|++|++
T Consensus 71 l~~~~~~~~--~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 71 LQTLSAGVF--DDLTELGTLGLANNQL 95 (251)
T ss_dssp CCCCCTTTT--TTCTTCCEEECTTSCC
T ss_pred CCccCHhHh--ccCCcCCEEECCCCcc
Confidence 344444445 6777777777777764
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=94.57 E-value=0.033 Score=43.10 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=29.4
Q ss_pred CceEEEecCCCCCcccCCCC---------------CCccccccccc-ccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNM-SLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~-~l~~~~l~~L~~LdLs~N~l 130 (130)
.+++.|+++++. +++.. ..+...+.+++ .+ ..+++|++|||++|++
T Consensus 30 ~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~--~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 30 AHVNYVDLSLNS---IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF--RGLSSLIILKLDYNQF 91 (455)
T ss_dssp TTCCEEECCSSC---CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT--TTCTTCCEEECTTCTT
T ss_pred CccCEEEecCCc---cCcCChhHhccCccccEEECcCCcccceECcccc--cccccCCEEeCCCCcc
Confidence 357888888887 54310 11223456654 45 7888888888888864
No 24
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=94.55 E-value=0.03 Score=38.45 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=16.0
Q ss_pred ccccc-cccccCccCCeEeCCCCCC
Q 039136 107 FLNMS-LLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~-l~~~~l~~L~~LdLs~N~l 130 (130)
.+|+. + ..+++|++|+|++|.+
T Consensus 95 ~l~~~~~--~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 95 SIPRGAF--DNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCTTTT--TTCTTCSEEECCSSCB
T ss_pred eeCHHHh--ccccCCCEEEeCCCCc
Confidence 34444 5 7888888888888864
No 25
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=94.48 E-value=0.031 Score=36.76 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=25.8
Q ss_pred CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.++..+++.++. ++ +. ..+ +.+++|++|+|++|.+
T Consensus 42 ~~L~~L~l~~n~---l~---------~~--~~~--~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 42 EELEFLSTINVG---LT---------SI--ANL--PKLNKLKKLELSDNRV 76 (149)
T ss_dssp TTCCEEECTTSC---CC---------CC--TTC--CCCTTCCEEECCSSCC
T ss_pred CCCcEEECcCCC---CC---------Cc--hhh--hcCCCCCEEECCCCcc
Confidence 567777777777 62 33 556 7888999999998875
No 26
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=94.23 E-value=0.041 Score=38.09 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=19.7
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+++.+|..+ ..+++|++|+|++|.|
T Consensus 114 l~~~~~~~~--~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 114 ISCVMPGSF--EHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEECTTSS--TTCTTCCEEECTTCCB
T ss_pred CCeeCHHHh--hcCCCCCEEEeCCCCc
Confidence 566667777 8888888888888864
No 27
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=93.94 E-value=0.043 Score=37.36 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=18.9
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+++..+..+ ..+++|++|+|++|.+
T Consensus 90 l~~~~~~~~--~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIPRGAF--DNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCTTTT--TTCTTCCEEECCSSCB
T ss_pred cCEeCHHHh--cCCCCCCEEEeCCCCC
Confidence 344334456 8999999999999974
No 28
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=93.73 E-value=0.034 Score=37.33 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=13.4
Q ss_pred cccccccCccCCeEeCCCCCC
Q 039136 110 MSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 110 ~~l~~~~l~~L~~LdLs~N~l 130 (130)
..+ ..+++|++|+|++|++
T Consensus 65 ~~~--~~l~~L~~L~Ls~N~l 83 (168)
T 2ell_A 65 SNL--PKLPKLKKLELSENRI 83 (168)
T ss_dssp SSC--CCCSSCCEEEEESCCC
T ss_pred hhh--ccCCCCCEEECcCCcC
Confidence 455 6777777777777764
No 29
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=93.68 E-value=0.054 Score=38.36 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=18.7
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|+.+ |..+++|++|+|++|++
T Consensus 94 ~l~~~~-f~~l~~L~~L~L~~N~l 116 (220)
T 2v9t_B 94 ELPKSL-FEGLFSLQLLLLNANKI 116 (220)
T ss_dssp CCCTTT-TTTCTTCCEEECCSSCC
T ss_pred ccCHhH-ccCCCCCCEEECCCCCC
Confidence 566654 48899999999999975
No 30
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=93.64 E-value=0.06 Score=37.44 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=18.3
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+++..|..+ ..+++|++|+|++|++
T Consensus 90 l~~i~~~~f--~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 90 LRCIPPRTF--DGLKSLRLLSLHGNDI 114 (193)
T ss_dssp CCBCCTTTT--TTCTTCCEEECCSSCC
T ss_pred cCEeCHHHh--CCCCCCCEEECCCCCC
Confidence 444444556 8889999999998875
No 31
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=93.46 E-value=0.067 Score=37.89 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=7.0
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|+|++|+
T Consensus 126 ~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 126 IGLSSVRLLSLYDNQ 140 (220)
T ss_dssp TTCTTCSEEECTTSC
T ss_pred CCCccCCEEECCCCc
Confidence 444444444444443
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=93.41 E-value=0.036 Score=41.30 Aligned_cols=25 Identities=20% Similarity=0.111 Sum_probs=20.4
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++|.+|..+ ..+++|++|||++|++
T Consensus 256 l~~~~p~~l--~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 256 IYGTLPQGL--TQLKFLHSLNVSFNNL 280 (313)
T ss_dssp CEECCCGGG--GGCTTCCEEECCSSEE
T ss_pred ccCcCChHH--hcCcCCCEEECcCCcc
Confidence 467888888 8888899999988864
No 33
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.39 E-value=0.043 Score=40.96 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=27.4
Q ss_pred CceEEEecCCCCCcccCCCCCCccccc--ccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVS--FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G--~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
..+..|+|+++. ++ + .+|..+ ..+++|+.|||++|+|
T Consensus 170 ~~L~~L~Ls~N~---l~---------~l~~l~~~~--~~l~~L~~L~Ls~N~i 208 (267)
T 3rw6_A 170 PELLSLNLSNNR---LY---------RLDDMSSIV--QKAPNLKILNLSGNEL 208 (267)
T ss_dssp TTCCEEECTTSC---CC---------CCGGGTTHH--HHSTTCCEEECTTSCC
T ss_pred CCCCEEECCCCC---CC---------CCccchhHH--hhCCCCCEEECCCCcc
Confidence 468899999998 74 4 455555 6778888888888765
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.31 E-value=0.11 Score=41.26 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=33.4
Q ss_pred CceEEecCCCCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136 70 WEGVKCNATTLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 70 W~GV~C~~~~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+.++.|.. ...+..|++.++. +++.. .++.+++.+|..+ +..+++|++|+|++|.+
T Consensus 111 l~~~~~~~-l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 111 ISRVSCSR-GQGKKNIYLANNK---ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCCEEECC-CSSCEEEECCSSC---CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSCC
T ss_pred CCCCCccc-cCCCCEEECCCCC---CCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecCCCcc
Confidence 55555643 3567778887777 54320 1223556666665 12677788888877764
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=93.13 E-value=0.091 Score=39.12 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=37.0
Q ss_pred CCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCe
Q 039136 67 CNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQR 122 (130)
Q Consensus 67 C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~ 122 (130)
|. |..+.|... ...++.|++.++. +++.. ..+.+++..|..+ +.+++|++
T Consensus 33 c~-l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~ 106 (332)
T 2ft3_A 33 CH-LRVVQCSDLGLKAVPKEISPDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNKISKIHEKAF--SPLRKLQK 106 (332)
T ss_dssp EE-TTEEECCSSCCSSCCSCCCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGS--TTCTTCCE
T ss_pred cc-CCEEECCCCCccccCCCCCCCCeEEECCCCc---CCccCHhHhhCCCCCcEEECCCCccCccCHhHh--hCcCCCCE
Confidence 67 899998642 1257788888777 53210 1122444556666 78888888
Q ss_pred EeCCCCCC
Q 039136 123 LDLSDKLV 130 (130)
Q Consensus 123 LdLs~N~l 130 (130)
|+|++|++
T Consensus 107 L~L~~n~l 114 (332)
T 2ft3_A 107 LYISKNHL 114 (332)
T ss_dssp EECCSSCC
T ss_pred EECCCCcC
Confidence 88888764
No 36
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=92.97 E-value=0.039 Score=36.28 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=11.8
Q ss_pred cccccccCccCCeEeCCCCC
Q 039136 110 MSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 110 ~~l~~~~l~~L~~LdLs~N~ 129 (130)
..+ ..+++|++|++++|.
T Consensus 107 ~~~--~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 107 EPL--KKLENLKSLDLFNCE 124 (149)
T ss_dssp GGG--GGCTTCCEEECTTCG
T ss_pred HHH--hhCCCCCEEeCcCCc
Confidence 455 666777777777665
No 37
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=92.79 E-value=0.087 Score=37.46 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=13.6
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|..+ ..+++|++|+|++|++
T Consensus 126 ~lp~~~--~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 126 ELPRGI--ERLTHLTHLALDQNQL 147 (229)
T ss_dssp SCCTTG--GGCTTCSEEECCSSCC
T ss_pred ccCccc--ccCCCCCEEECCCCcC
Confidence 555555 5666666666666653
No 38
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=92.71 E-value=0.099 Score=35.34 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=9.1
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|+|++|.
T Consensus 121 ~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 121 DRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCcccCEEEecCCC
Confidence 456666666666664
No 39
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=92.67 E-value=0.095 Score=37.07 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=16.9
Q ss_pred ccccccccccccCccCCeEeCCCCCC
Q 039136 105 VSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 105 ~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++..|..+ ..+++|++|+|++|++
T Consensus 94 ~~~~~~~~--~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 94 ENVQHKMF--KGLESLKTLMLRSNRI 117 (220)
T ss_dssp CCCCGGGG--TTCSSCCEEECTTSCC
T ss_pred CccCHhHh--cCCcCCCEEECCCCcC
Confidence 44444455 7888888888888865
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=92.51 E-value=0.13 Score=38.19 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=38.0
Q ss_pred CCCCCceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCC
Q 039136 66 CCNDWEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQ 121 (130)
Q Consensus 66 ~C~~W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~ 121 (130)
.|. |..+.|... ...++.+++.++. +++.. .++.+++..|..+ +.+++|+
T Consensus 30 ~c~-l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~ 103 (330)
T 1xku_A 30 QCH-LRVVQCSDLGLEKVPKDLPPDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLE 103 (330)
T ss_dssp EEE-TTEEECTTSCCCSCCCSCCTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT--TTCTTCC
T ss_pred cCC-CeEEEecCCCccccCccCCCCCeEEECCCCc---CCEeChhhhccCCCCCEEECCCCcCCeeCHHHh--cCCCCCC
Confidence 356 888888641 1356778888877 54320 1222445556667 7888888
Q ss_pred eEeCCCCCC
Q 039136 122 RLDLSDKLV 130 (130)
Q Consensus 122 ~LdLs~N~l 130 (130)
+|+|++|++
T Consensus 104 ~L~Ls~n~l 112 (330)
T 1xku_A 104 RLYLSKNQL 112 (330)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcC
Confidence 888888864
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=92.41 E-value=0.098 Score=41.69 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=9.9
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
..+++|++|||++|++
T Consensus 539 ~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHI 554 (635)
T ss_dssp TTCTTCCEEECTTSCC
T ss_pred hCCCCCCEEECCCCcC
Confidence 5666666666666653
No 42
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=92.22 E-value=0.076 Score=36.03 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=8.1
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|++++|.
T Consensus 110 ~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 110 ASLKSLTYLCILRNP 124 (176)
T ss_dssp GGCTTCCEEECCSSG
T ss_pred hcCCCCCEEEecCCC
Confidence 455555555555553
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=92.21 E-value=0.12 Score=38.85 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=18.1
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
..+.+|..+ +.+++|++|||++|++
T Consensus 265 ~~~~~p~~~--~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 265 NLLTLPLDI--HRLTQLEKLDLRGCVN 289 (328)
T ss_dssp TCCBCCTTG--GGCTTCCEEECTTCTT
T ss_pred chhhcchhh--hcCCCCCEEeCCCCCc
Confidence 356777777 7778888888877753
No 44
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.19 E-value=0.12 Score=34.15 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=28.4
Q ss_pred ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.++.|+|+++. + -.+|... |..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~---l----------~~l~~~~-f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNN---L----------TALPPGL-LDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSC---C----------SSCCTTT-GGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCc---C----------CccChhh-hhhccccCEEEecCCCe
Confidence 47788888888 7 3566654 48899999999999964
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=92.07 E-value=0.11 Score=41.38 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=27.4
Q ss_pred ceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.++.|+|+.+. +++.. ..+.+++..|..+ .+|++|++|||++|++
T Consensus 53 ~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f--~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 53 STKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY--QSLSHLSTLILTGNPI 112 (635)
T ss_dssp TCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECTTCCC
T ss_pred CCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh--cCCCCCCEEEccCCcC
Confidence 57889999888 64321 1111333333345 7788888888888764
No 46
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=92.05 E-value=0.1 Score=36.01 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=7.7
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
+.+++|++|+|++|.
T Consensus 133 ~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNG 147 (197)
T ss_dssp TTCSSCCEEECCSCT
T ss_pred hhCCCCCEEEccCCC
Confidence 455555555555543
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=92.02 E-value=0.17 Score=39.35 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=33.0
Q ss_pred CceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeC
Q 039136 70 WEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDL 125 (130)
Q Consensus 70 W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdL 125 (130)
|..+.|... ...++.|+|.++. +++.. ..+.+++..|..+ ..+++|++|+|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF--NGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCc---CceECHHHcCCCCCCCEEECCCCccCCcChhhc--cCcccCCEEEC
Confidence 567777542 1357788888877 54310 1122344444555 77777777777
Q ss_pred CCCCC
Q 039136 126 SDKLV 130 (130)
Q Consensus 126 s~N~l 130 (130)
++|++
T Consensus 131 ~~n~l 135 (452)
T 3zyi_A 131 FDNWL 135 (452)
T ss_dssp CSSCC
T ss_pred CCCcC
Confidence 77764
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=92.01 E-value=0.16 Score=40.74 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=29.2
Q ss_pred CceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+++.|+++++. +++.. .++.+++..|..+ +++++|++|||++|.+
T Consensus 32 ~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~--~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 32 SSTKNIDLSFNP---LKILKSYSFSNFSELQWLDLSRCEIETIEDKAW--HGLHHLSNLILTGNPI 92 (606)
T ss_dssp TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECTTCCC
T ss_pred CCcCEEECCCCC---cCEeChhhccCCccCcEEeCCCCcccccCHHHh--hchhhcCEeECCCCcc
Confidence 457788888877 54310 1122444455566 7888888888888864
No 49
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=91.93 E-value=0.023 Score=46.70 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=19.1
Q ss_pred CCCC-----CCCceE-EecCCCCceEEEecCCCC
Q 039136 64 SDCC-----NDWEGV-KCNATTLRVTQLSLNQKT 91 (130)
Q Consensus 64 ~~~C-----~~W~GV-~C~~~~~rV~~L~L~~~~ 91 (130)
..+| . |.|+ .|.. .+++.|++.+++
T Consensus 40 ~~~~~~~~~~-~~~l~~C~~--~~L~~L~Ls~n~ 70 (571)
T 3cvr_A 40 ALPGENRNEA-VSLLKECLI--NQFSELQLNRLN 70 (571)
T ss_dssp CCTTCCHHHH-HHHHHHHHH--TTCSEEECCSSC
T ss_pred CCccccccch-hhhcccccc--CCccEEEeCCCC
Confidence 4667 5 8898 6753 478899999888
No 50
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=91.78 E-value=0.14 Score=36.64 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=17.3
Q ss_pred ccccccccccccCccCCeEeCCCCCC
Q 039136 105 VSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 105 ~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++..+..+ ..+++|++|+|++|++
T Consensus 96 ~~~~~~~~--~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 96 ASLPLGVF--DHLTQLDKLYLGGNQL 119 (251)
T ss_dssp CCCCTTTT--TTCTTCCEEECCSSCC
T ss_pred cccChhHh--cccCCCCEEEcCCCcC
Confidence 43333445 7899999999999875
No 51
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=91.51 E-value=0.06 Score=36.09 Aligned_cols=15 Identities=33% Similarity=0.321 Sum_probs=9.8
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|++++|.
T Consensus 117 ~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 117 KKLECLKSLDLFNCE 131 (168)
T ss_dssp SSCSCCCEEECCSSG
T ss_pred hcCCCCCEEEeeCCc
Confidence 566666666666664
No 52
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=91.40 E-value=0.14 Score=37.89 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=20.5
Q ss_pred ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
++..|++.++. + ++..|..+ +.+++|++|||++|+
T Consensus 146 ~L~~L~Ls~n~---l---------~~~~~~~~--~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 146 GLKVLSIAQAH---S---------PAFSCEQV--RAFPALTSLDLSDNP 180 (310)
T ss_dssp CCCEEEEECCS---S---------CCCCTTSC--CCCTTCCEEECCSCT
T ss_pred CCCEEEeeCCC---c---------chhhHHHh--ccCCCCCEEECCCCC
Confidence 45566666665 4 34444445 666666666666665
No 53
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=91.07 E-value=0.15 Score=40.12 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=25.2
Q ss_pred ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++..|+++++. + ++..|..+ +.+++|++|||++|++
T Consensus 46 ~L~~L~Ls~n~---l---------~~~~~~~~--~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 46 KLRILIISHNR---I---------QYLDISVF--KFNQELEYLDLSHNKL 81 (520)
T ss_dssp TCCEEECCSSC---C---------CEEEGGGG--TTCTTCCEEECCSSCC
T ss_pred cccEEecCCCc---c---------CCcChHHh--hcccCCCEEecCCCce
Confidence 45555555555 4 46666677 8888888888888875
No 54
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=90.97 E-value=0.2 Score=34.66 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=10.6
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
..+++|++|+|++|++
T Consensus 121 ~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 121 DKLTQLKDLRLYQNQL 136 (208)
T ss_dssp TTCTTCCEEECCSSCC
T ss_pred ccCCcCCEEECCCCcc
Confidence 5666777777776653
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=90.92 E-value=0.19 Score=37.23 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=15.8
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|..+ . ++|++|++++|.+
T Consensus 114 ~l~~~~--~--~~L~~L~l~~n~l 133 (330)
T 1xku_A 114 ELPEKM--P--KTLQELRVHENEI 133 (330)
T ss_dssp BCCSSC--C--TTCCEEECCSSCC
T ss_pred ccChhh--c--ccccEEECCCCcc
Confidence 567666 3 7999999999975
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=90.84 E-value=0.2 Score=36.13 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=17.8
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|..+ +.+++|++|+|++|++
T Consensus 140 ~l~~~~--~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 140 KLPEYF--SNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CCCGGG--GGCTTCCEEECCSSCC
T ss_pred cCchhh--ccCCCCCEEECCCCCC
Confidence 467777 8889999999998864
No 57
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=90.83 E-value=0.18 Score=38.18 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=9.2
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
..+++|++|||++|+|
T Consensus 85 ~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TTCTTCCEEECCSSCC
T ss_pred cCCCCCCEEECCCCcC
Confidence 5556666666665543
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.76 E-value=0.18 Score=40.11 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=8.8
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
+.+++|++|||++|.
T Consensus 77 ~~l~~L~~L~Ls~N~ 91 (487)
T 3oja_A 77 ESLSTLRTLDLNNNY 91 (487)
T ss_dssp TTCTTCCEEECCSSE
T ss_pred ccCCCCCEEEecCCc
Confidence 555666666666554
No 59
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=90.67 E-value=0.29 Score=38.14 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=33.8
Q ss_pred CceEEecCC---------CCceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeC
Q 039136 70 WEGVKCNAT---------TLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDL 125 (130)
Q Consensus 70 W~GV~C~~~---------~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdL 125 (130)
|..|.|... ...+..|++.++. +++.. ..+.+++..|..+ .++++|++|+|
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNR---IKTLNQDEFASFPHLEELELNENIVSAVEPGAF--NNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSC---CCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEEC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCc---cceECHhHccCCCCCCEEECCCCccCEeChhhh--hCCccCCEEEC
Confidence 567777541 1246677777776 53310 1122445556666 78888888888
Q ss_pred CCCCC
Q 039136 126 SDKLV 130 (130)
Q Consensus 126 s~N~l 130 (130)
++|++
T Consensus 88 ~~n~l 92 (477)
T 2id5_A 88 RSNRL 92 (477)
T ss_dssp CSSCC
T ss_pred CCCcC
Confidence 88764
No 60
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=90.61 E-value=0.17 Score=34.23 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=24.2
Q ss_pred CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.++..++++++. + + .+|+.+ |..+++|++|+|++|++
T Consensus 64 ~~L~~L~Ls~N~---l---------~-~~~~~~-~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 64 RRLKTLLVNNNR---I---------C-RIGEGL-DQALPDLTELILTNNSL 100 (176)
T ss_dssp SSCCEEECCSSC---C---------C-EECSCH-HHHCTTCCEEECCSCCC
T ss_pred CCCCEEECCCCc---c---------c-ccCcch-hhcCCCCCEEECCCCcC
Confidence 356677777776 5 2 345443 36778888888888764
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=90.61 E-value=0.17 Score=37.45 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=12.8
Q ss_pred cccccccccccCccCCeEeCCCCC
Q 039136 106 SFLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 106 G~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
+..|..+ +.+++|++|||++|+
T Consensus 163 ~~~~~~~--~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 163 NFSCEQV--RVFPALSTLDLSDNP 184 (312)
T ss_dssp CCCTTTC--CCCSSCCEEECCSCT
T ss_pred cchHHHh--ccCCCCCEEECCCCC
Confidence 3333455 666666666666665
No 62
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=90.59 E-value=0.21 Score=37.14 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.1
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|..+ . ++|++|++++|++
T Consensus 116 ~l~~~~--~--~~L~~L~l~~n~i 135 (332)
T 2ft3_A 116 EIPPNL--P--SSLVELRIHDNRI 135 (332)
T ss_dssp SCCSSC--C--TTCCEEECCSSCC
T ss_pred ccCccc--c--ccCCEEECCCCcc
Confidence 677776 3 8999999999975
No 63
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=90.50 E-value=0.16 Score=41.66 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=25.7
Q ss_pred CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
.++..|++.++. + .|.+|..+ +++++|++|||++|+
T Consensus 249 ~~L~~L~L~~n~---l---------~~~~p~~l--~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 249 KDLTDVEVYNCP---N---------LTKLPTFL--KALPEMQLINVACNR 284 (636)
T ss_dssp TTCCEEEEECCT---T---------CSSCCTTT--TTCSSCCEEECTTCT
T ss_pred CCCCEEEecCCc---C---------CccChHHH--hcCCCCCEEECcCCC
Confidence 356777777777 5 47777776 777777777777775
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=90.31 E-value=0.23 Score=36.03 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=13.2
Q ss_pred ccccccccccccCccCCeEeCCCCCC
Q 039136 105 VSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 105 ~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++..|..+ ..+++|++|||++|++
T Consensus 190 ~~~~~~~~--~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 190 AHVHPHAF--RDLGRLMTLYLFANNL 213 (285)
T ss_dssp CEECTTTT--TTCTTCCEEECCSSCC
T ss_pred cccCHhHc--cCcccccEeeCCCCcC
Confidence 34445555 5566666666666543
No 65
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=90.31 E-value=0.2 Score=40.77 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=13.1
Q ss_pred cccccccccCccCCeEeCCCCCC
Q 039136 108 LNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 108 ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+| .+ +.+++|++|+|++|+|
T Consensus 501 lp-~l--~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 501 VD-GV--ANLPRLQELLLCNNRL 520 (567)
T ss_dssp CG-GG--TTCSSCCEEECCSSCC
T ss_pred Cc-cc--CCCCCCcEEECCCCCC
Confidence 45 55 6677777777777654
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=90.25 E-value=0.22 Score=39.78 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=17.9
Q ss_pred ccccccccccccCccCCeEeCCCCCC
Q 039136 105 VSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 105 ~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++..|..+ +.+++|++|||++|++
T Consensus 89 ~~~~~~~~--~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 89 RSLDFHVF--LFNQDLEYLDVSHNRL 112 (562)
T ss_dssp CEECTTTT--TTCTTCCEEECTTSCC
T ss_pred CcCCHHHh--CCCCCCCEEECCCCcC
Confidence 45556666 7888888888888865
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=89.98 E-value=0.14 Score=38.06 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=11.3
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|||++|+
T Consensus 77 ~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 77 ESLSTLRTLDLNNNY 91 (317)
T ss_dssp TTCTTCCEEECCSSE
T ss_pred hhcCCCCEEECcCCc
Confidence 677777777777775
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=89.89 E-value=0.25 Score=37.02 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=18.0
Q ss_pred ccccc-cccccCccCCeEeCCCCCC
Q 039136 107 FLNMS-LLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~-l~~~~l~~L~~LdLs~N~l 130 (130)
.+|+. + ..+++|++|+|++|++
T Consensus 114 ~~~~~~~--~~l~~L~~L~L~~n~l 136 (353)
T 2z80_A 114 NLSSSWF--KPLSSLTFLNLLGNPY 136 (353)
T ss_dssp SCCHHHH--TTCTTCSEEECTTCCC
T ss_pred cCCHhHh--CCCccCCEEECCCCCC
Confidence 45554 6 8999999999999975
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=89.87 E-value=0.26 Score=36.05 Aligned_cols=15 Identities=33% Similarity=0.248 Sum_probs=7.6
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|||++|+
T Consensus 220 ~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 220 KCLNSLQVLDYSLNH 234 (306)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred cCcccCCEeECCCCC
Confidence 445555555555554
No 70
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=89.84 E-value=0.24 Score=38.10 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=12.1
Q ss_pred ccccccccccccCccCCeEeCCCCC
Q 039136 105 VSFLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 105 ~G~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
++..|..+ ..+++|++|||++|+
T Consensus 360 ~~~~~~~~--~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 360 RALGDQSF--LGLPNLKELALDTNQ 382 (455)
T ss_dssp CEECTTTT--TTCTTCCEEECCSSC
T ss_pred cccChhhc--cccccccEEECCCCc
Confidence 34444444 555555555555554
No 71
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=89.74 E-value=0.19 Score=42.11 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=28.2
Q ss_pred CceEEEecCCCCCcccCCC-------------C-CCcccccccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDY-------------N-SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~-------------~-~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
..+..|+|+++. ++.. . .++.+ +.||..+ +.|++|++|+|++|.|
T Consensus 270 ~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~--~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 270 SNLRVLDLSHNR---LTSLPAELGSCFQLKYFYFFDNMV-TTLPWEF--GNLCNLQFLGVEGNPL 328 (727)
T ss_dssp TTCCEEECTTSC---CSSCCSSGGGGTTCSEEECCSSCC-CCCCSST--TSCTTCCCEECTTSCC
T ss_pred CCCCEEeCcCCc---CCccChhhcCCCCCCEEECCCCCC-CccChhh--hcCCCccEEeCCCCcc
Confidence 357788888877 5321 0 11212 3677776 7777888888877764
No 72
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=89.62 E-value=0.23 Score=41.62 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=13.4
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|..+ +.|++|++|+|++|.|
T Consensus 284 ~lp~~~--~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 284 SLPAEL--GSCFQLKYFYFFDNMV 305 (727)
T ss_dssp SCCSSG--GGGTTCSEEECCSSCC
T ss_pred ccChhh--cCCCCCCEEECCCCCC
Confidence 556565 6666666666666653
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=89.46 E-value=0.31 Score=35.11 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=15.8
Q ss_pred cccccccccccCccCCeEeCCCCCC
Q 039136 106 SFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 106 G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+..+..+ ..+++|++|+|++|.+
T Consensus 66 ~~~~~~~--~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 66 TIEDGAY--QSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTTT--TTCTTCCEEECTTCCC
T ss_pred ccCHHHc--cCCcCCCEEECCCCcc
Confidence 3333455 7788888888888864
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=89.41 E-value=0.55 Score=34.48 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=11.9
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
..+++|++|+|++|++
T Consensus 121 ~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 121 RGLGELQELYLKGNEL 136 (290)
T ss_dssp TTCTTCCEEECTTSCC
T ss_pred cCCCCCCEEECCCCCC
Confidence 7777777777777764
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=89.26 E-value=0.28 Score=38.73 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=20.1
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+++..|..+ +.+++|++|||++|++
T Consensus 86 l~~~~~~~~--~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 86 LSSLSSSWF--GPLSSLKYLNLMGNPY 110 (549)
T ss_dssp CCSCCHHHH--TTCTTCCEEECTTCCC
T ss_pred cCccCHHHh--ccCCCCcEEECCCCcc
Confidence 455555567 9999999999999975
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=89.15 E-value=0.36 Score=37.93 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=11.3
Q ss_pred ccccccccccCccCCeEeCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
.+|..+ +.+++|++|||++|+
T Consensus 365 ~~~~~~--~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 365 KIAEMT--TQMKSLQQLDISQNS 385 (520)
T ss_dssp HHHHHH--TTCTTCCEEECCSSC
T ss_pred cchHHH--hhCCCCCEEECCCCc
Confidence 334444 555566666665554
No 77
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=89.13 E-value=0.28 Score=39.26 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=16.3
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+++.+|..+ +.+++|++|||++|++
T Consensus 509 l~~~~~~~~--~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 509 LLFLDSSHY--NQLYSLSTLDCSFNRI 533 (606)
T ss_dssp CSCEEGGGT--TTCTTCCEEECTTSCC
T ss_pred CCCcCHHHc--cCCCcCCEEECCCCcC
Confidence 445556666 6677777777777754
No 78
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=88.80 E-value=0.24 Score=34.07 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=7.2
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
+.+++|++|+|++|+
T Consensus 109 ~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 109 SGLTSLTLLDISHSA 123 (197)
T ss_dssp TTCTTCCEEECCSSB
T ss_pred cCCCCCCEEEecCCc
Confidence 444444444444443
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=88.74 E-value=0.36 Score=34.92 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=7.0
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
+.+++|++|++++|+
T Consensus 154 ~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQ 168 (272)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccCccCCEEECCCCC
Confidence 444444444444443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=88.74 E-value=0.36 Score=34.91 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=10.5
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
+.+++|++|+|++|++
T Consensus 130 ~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQL 145 (272)
T ss_dssp TTCTTCCEEECCSSCC
T ss_pred ccCCCCCEEECCCCcc
Confidence 6666677777766653
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=88.68 E-value=0.36 Score=35.50 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=16.6
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|+.. |..+++|+.|+|++|++
T Consensus 138 ~~~~~~-~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 138 TLPPGL-LTPTPKLEKLSLANNNL 160 (290)
T ss_dssp CCCTTT-TTTCTTCCEEECTTSCC
T ss_pred ccChhh-cccccCCCEEECCCCcC
Confidence 344443 37888999999998875
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=88.60 E-value=0.23 Score=36.63 Aligned_cols=24 Identities=25% Similarity=0.112 Sum_probs=13.4
Q ss_pred ccccccccccccC---ccCCeEeCCCCCC
Q 039136 105 VSFLNMSLLFHPF---EELQRLDLSDKLV 130 (130)
Q Consensus 105 ~G~ip~~l~~~~l---~~L~~LdLs~N~l 130 (130)
++.+|+.+ ..+ ++|++|+|++|++
T Consensus 237 ~~~~p~~~--~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 237 RATVNPSA--PRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp CCCCCSCC--SSCCCCTTCCCEECCSSCC
T ss_pred CccchhhH--HhccCcCcCCEEECCCCCC
Confidence 44445554 444 4666666666654
No 83
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=88.57 E-value=0.37 Score=34.84 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=8.6
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|+|++|+
T Consensus 150 ~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNR 164 (285)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccCCCccEEECCCCc
Confidence 555555555555554
No 84
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=88.55 E-value=0.35 Score=38.73 Aligned_cols=45 Identities=9% Similarity=0.031 Sum_probs=27.1
Q ss_pred ceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.++.++++++. +++.. ..+.+++..|..+ +++++|++|||++|++
T Consensus 34 ~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 34 STECLEFSFNV---LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF--QSQHRLDTLVLTANPL 93 (606)
T ss_dssp TCCEEECTTCC---CSEECTTTSTTCTTCSEEECTTCCCCEECTTTT--TTCTTCCEEECTTCCC
T ss_pred cCcEEEccCCc---cCcCChhHhccCccceEEECCCCccceeChhhc--cCccccCeeeCCCCcc
Confidence 56777887776 53210 1112345555666 7777888888877764
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=88.51 E-value=0.42 Score=35.93 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=20.8
Q ss_pred ccccccccccccCccCCeEeCCCCCC
Q 039136 105 VSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 105 ~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
-+.||+.. |..+++|++|||++|+|
T Consensus 190 l~~i~~~~-f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 190 LEELPNDV-FHGASGPVILDISRTRI 214 (350)
T ss_dssp CCCCCTTT-TTTEECCSEEECTTSCC
T ss_pred ccCCCHHH-hccCcccchhhcCCCCc
Confidence 46788764 58999999999999985
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=88.48 E-value=0.46 Score=33.49 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=8.3
Q ss_pred ceEEEecCCCC
Q 039136 81 RVTQLSLNQKT 91 (130)
Q Consensus 81 rV~~L~L~~~~ 91 (130)
.++.+++.++.
T Consensus 32 ~l~~L~l~~n~ 42 (239)
T 2xwt_C 32 STQTLKLIETH 42 (239)
T ss_dssp TCCEEEEESCC
T ss_pred cccEEEEeCCc
Confidence 57778887777
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=88.47 E-value=0.42 Score=38.15 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=12.5
Q ss_pred cccccccccCccCCeEeCCCCCC
Q 039136 108 LNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 108 ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+|..+ ..+++|++|||++|++
T Consensus 395 ~~~~~--~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 395 VALMT--KNMSSLETLDVSLNSL 415 (562)
T ss_dssp HHHTT--TTCTTCCEEECTTSCC
T ss_pred chhhh--cCCCCCCEEECCCCcC
Confidence 33445 6666666666666653
No 88
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=88.39 E-value=0.38 Score=36.35 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=7.9
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|+|++|+
T Consensus 133 ~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 133 EDMAQLQKLYLSQNQ 147 (361)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred CCcccCCEEECCCCc
Confidence 455555555555554
No 89
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=88.38 E-value=0.35 Score=37.59 Aligned_cols=23 Identities=22% Similarity=0.609 Sum_probs=18.1
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|+.. |.++++|++|||++|++
T Consensus 94 ~~~~~~-~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 94 LIPLGV-FTGLSNLTKLDISENKI 116 (477)
T ss_dssp SCCTTS-STTCTTCCEEECTTSCC
T ss_pred ccCccc-ccCCCCCCEEECCCCcc
Confidence 455543 38999999999999975
No 90
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=88.28 E-value=0.78 Score=33.86 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=9.3
Q ss_pred cCccCCeEeCCCCCC
Q 039136 116 PFEELQRLDLSDKLV 130 (130)
Q Consensus 116 ~l~~L~~LdLs~N~l 130 (130)
.+++|++|+|++|++
T Consensus 167 ~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 167 SSDTLEHLNLQYNFI 181 (317)
T ss_dssp GTTTCCEEECTTSCC
T ss_pred ccCcCCEEECCCCcC
Confidence 466666666666653
No 91
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=88.06 E-value=0.38 Score=37.36 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=17.8
Q ss_pred cccc-ccccccCccCCeEeCCCCCC
Q 039136 107 FLNM-SLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~-~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|+ .+ ..+++|++|+|++|++
T Consensus 137 ~~~~~~~--~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 137 VIPSGAF--EYLSKLRELWLRNNPI 159 (452)
T ss_dssp BCCTTTS--SSCTTCCEEECCSCCC
T ss_pred ccChhhh--cccCCCCEEECCCCCc
Confidence 4444 45 8899999999999975
No 92
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=87.99 E-value=0.29 Score=39.91 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=32.7
Q ss_pred CceEEEecCCCCCcccCCCC-------------CCccccccc-ccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYN-------------SYSYGVSFL-NMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~-------------~~~~~~G~i-p~~l~~~~l~~L~~LdLs~N~l 130 (130)
.++..|+|+++. +++.. .++.+++.+ |..+ +.+++|+.|+|++|.|
T Consensus 486 ~~L~~L~Ls~N~---l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l--~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 486 RCLEVLQASDNA---LENVDGVANLPRLQELLLCNNRLQQSAAIQPL--VSCPRLVLLNLQGNSL 545 (567)
T ss_dssp TTCCEEECCSSC---CCCCGGGTTCSSCCEEECCSSCCCSSSTTGGG--GGCTTCCEEECTTSGG
T ss_pred CCCCEEECCCCC---CCCCcccCCCCCCcEEECCCCCCCCCCCcHHH--hcCCCCCEEEecCCcC
Confidence 356777777776 54421 223356665 8888 9999999999999975
No 93
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=87.85 E-value=0.55 Score=38.19 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=27.5
Q ss_pred CceEEEecCCCCCcccCCCC---------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+++.|+++++. +++.. .++.+++..|..+ +++++|++|||++|++
T Consensus 25 ~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 25 TNITVLNLTHNQ---LRRLPAANFTRYSQLTSLDVGFNTISKLEPELC--QKLPMLKVLNLQHNEL 85 (680)
T ss_dssp TTCSEEECCSSC---CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH--HHCTTCCEEECCSSCC
T ss_pred CCCcEEECCCCC---CCCcCHHHHhCCCcCcEEECCCCccCccCHHHH--hcccCcCEEECCCCcc
Confidence 357777777776 53310 1122345555556 7777788888777754
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=87.80 E-value=0.45 Score=34.28 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=7.7
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|+|++|+
T Consensus 154 ~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQ 168 (270)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCcccceeEecCCc
Confidence 445555555555554
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=87.70 E-value=0.42 Score=34.61 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=22.4
Q ss_pred CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
..+..|++.++. ++ + +|+ + ..+++|++|+|++|++
T Consensus 63 ~~L~~L~L~~N~---i~---------~-~~~-l--~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 63 TNLKELHLSHNQ---IS---------D-LSP-L--KDLTKLEELSVNRNRL 97 (263)
T ss_dssp TTCCEEECCSSC---CC---------C-CGG-G--TTCSSCCEEECCSSCC
T ss_pred CCCCEEECCCCc---cC---------C-Chh-h--ccCCCCCEEECCCCcc
Confidence 357777777777 52 2 333 5 6777777777777754
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=87.57 E-value=0.32 Score=41.07 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=34.3
Q ss_pred CceEEecCCCCceEEEecCCCCCcccCCCC---------------CCcccccccc-cccccccCccCCeEeCCCCCC
Q 039136 70 WEGVKCNATTLRVTQLSLNQKTKINYSDYN---------------SYSYGVSFLN-MSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 70 W~GV~C~~~~~rV~~L~L~~~~~~~l~~~~---------------~~~~~~G~ip-~~l~~~~l~~L~~LdLs~N~l 130 (130)
|..|.+ . ..+++.|+|+.+. +++.. ..+...+.++ ..+ +++++|++|+|++|.+
T Consensus 16 L~~vP~-l-p~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f--~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 16 LTQVPQ-V-LNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF--RNLPNLRILDLGSSKI 85 (844)
T ss_dssp SSCCCS-S-CTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTT--SSCTTCCEEECTTCCC
T ss_pred CCCCCC-C-CCCcCEEECCCCc---CCccChhHCcccccCeEEeCCCCCCccccCHHHh--cCCCCCCEEECCCCcC
Confidence 666665 2 3567788887776 54310 1111346664 456 8899999999998875
No 97
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=87.50 E-value=0.4 Score=36.33 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=14.1
Q ss_pred ccccccccccccCccCCeEeCCCCCC
Q 039136 105 VSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 105 ~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++..|..+ ..+++|++|+|++|++
T Consensus 261 ~~~~~~~~--~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 261 EKIMYHPF--VKMQRLERLYISNNRL 284 (390)
T ss_dssp CEEESGGG--TTCSSCCEEECCSSCC
T ss_pred CCcChhHc--cccccCCEEECCCCcC
Confidence 44445555 6666666666666653
No 98
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=87.40 E-value=0.46 Score=36.77 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=9.7
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
..+++|++|||++|++
T Consensus 252 ~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 252 DNLQSLVEINLAHNNL 267 (440)
T ss_dssp TTCTTCCEEECTTSCC
T ss_pred cCCCCCCEEECCCCCC
Confidence 5566666666666653
No 99
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=87.34 E-value=0.47 Score=35.94 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=7.9
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|++++|.
T Consensus 138 ~~l~~L~~L~L~~n~ 152 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNN 152 (390)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCCCCcEEECCCCc
Confidence 445555555555554
No 100
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=87.22 E-value=0.34 Score=41.74 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=25.5
Q ss_pred CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
.++..|+|.++. + .|.+|..+ ++|++|++|+|++|+
T Consensus 491 ~~L~~L~Ls~N~---l---------~~~iP~~l--~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 491 KDLTDVELYNCP---N---------MTQLPDFL--YDLPELQSLNIACNR 526 (876)
T ss_dssp TTCCEEEEESCT---T---------CCSCCGGG--GGCSSCCEEECTTCT
T ss_pred CCCCEEECcCCC---C---------CccChHHH--hCCCCCCEEECcCCC
Confidence 356777777776 5 57777777 777777777777775
No 101
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=87.21 E-value=0.47 Score=37.96 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=14.9
Q ss_pred ccccccccccccCccCCeEeCCCCCC
Q 039136 105 VSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 105 ~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++..|..+ +.+++|++|||++|++
T Consensus 489 ~~~~~~~~--~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 489 SSIDQHAF--TSLKMMNHVDLSHNRL 512 (606)
T ss_dssp CEECTTTT--TTCTTCCEEECCSSCC
T ss_pred CccChhhh--ccccCCCEEECCCCcc
Confidence 44555555 6677777777776654
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=86.69 E-value=0.79 Score=32.21 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=16.6
Q ss_pred ccccccccccC-ccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPF-EELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l-~~L~~LdLs~N~l 130 (130)
.+|+.. |..+ ++|++||+++|++
T Consensus 194 ~i~~~~-~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 194 VIDKDA-FGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp EECTTT-TTTCSBCCSEEECTTCCC
T ss_pred cCCHHH-hhccccCCcEEECCCCcc
Confidence 444432 3788 8999999999875
No 103
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.53 E-value=0.48 Score=38.31 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=16.1
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+++.+|..+ +.+++|++|+|++|.+
T Consensus 266 l~~~~~~~~--~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 266 LEKIMYHPF--VKMQRLERLYISNNRL 290 (597)
T ss_dssp CCEEESGGG--TTCSSCCEEECTTSCC
T ss_pred cCCCCHHHh--cCccCCCEEECCCCCC
Confidence 455556666 6677777777776654
No 104
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=86.37 E-value=0.53 Score=37.15 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=6.8
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
.++++|++|++++|.
T Consensus 515 ~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 515 DRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hcccCCcEEEecCCc
Confidence 444444444444443
No 105
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=86.24 E-value=0.55 Score=34.60 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=15.1
Q ss_pred ccccccccCccCCeEeCCCCCC
Q 039136 109 NMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 109 p~~l~~~~l~~L~~LdLs~N~l 130 (130)
|. + ..+++|++|+|++|.+
T Consensus 290 p~-~--~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 290 PS-P--DELPQVGNLSLKGNPF 308 (312)
T ss_dssp CC-T--TTSCEEEEEECTTCTT
T ss_pred hh-H--hhCCCCCEEeccCCCC
Confidence 44 6 7888888888888875
No 106
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=86.13 E-value=0.6 Score=36.87 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=17.1
Q ss_pred ccccccccccccCccCCeEeCCCCCC
Q 039136 105 VSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 105 ~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++..|..+ +++++|++|+|++|++
T Consensus 65 ~~i~~~~~--~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 65 QTIEDGAY--QSLSHLSTLILTGNPI 88 (570)
T ss_dssp CEECTTTT--TTCTTCCEEECTTCCC
T ss_pred CccCcccc--cCchhCCEEeCcCCcC
Confidence 34444456 7888888888888864
No 107
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=85.95 E-value=0.61 Score=36.06 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=28.3
Q ss_pred ceEEEecCCCCCcccCCCC-------------CCcccccccccccccccCccCCeEeCCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYN-------------SYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~-------------~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+..|++.++. ++... .++.+++..|..+ ..+++|++|+|++|++
T Consensus 186 ~L~~L~L~~n~---l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 186 NLRYLNLAMCN---LREIPNLTPLIKLDELDLSGNHLSAIRPGSF--QGLMHLQKLWMIQSQI 243 (440)
T ss_dssp SCCEEECTTSC---CSSCCCCTTCSSCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTCCC
T ss_pred ccCeecCCCCc---CccccccCCCcccCEEECCCCccCccChhhh--ccCccCCEEECCCCce
Confidence 46667777766 43310 1222455556666 7888888888888864
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=85.47 E-value=0.59 Score=33.82 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=28.4
Q ss_pred CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.++..+++.+++ + ..+| .+ ..+++|++|+|++|++
T Consensus 41 ~~L~~L~l~~n~---i----------~~l~-~l--~~l~~L~~L~L~~N~i 75 (263)
T 1xeu_A 41 SGVQNFNGDNSN---I----------QSLA-GM--QFFTNLKELHLSHNQI 75 (263)
T ss_dssp TTCSEEECTTSC---C----------CCCT-TG--GGCTTCCEEECCSSCC
T ss_pred CcCcEEECcCCC---c----------ccch-HH--hhCCCCCEEECCCCcc
Confidence 457888898888 7 3455 56 8999999999999975
No 109
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.44 E-value=0.66 Score=37.49 Aligned_cols=15 Identities=20% Similarity=0.022 Sum_probs=8.1
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
+.+++|++|+|++|.
T Consensus 120 ~~l~~L~~L~L~~n~ 134 (597)
T 3oja_B 120 QNVPLLTVLVLERND 134 (597)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCCCCCEEEeeCCC
Confidence 555555555555554
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=85.00 E-value=0.39 Score=35.58 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=7.5
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
+.+++|++|++++|.
T Consensus 308 ~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNH 322 (347)
T ss_dssp HTCTTCSEEECCSSS
T ss_pred hccccCCEEEccCCc
Confidence 445555555555544
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=84.74 E-value=0.058 Score=37.35 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=24.1
Q ss_pred ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+..|+++++. + ++ +| .+ ..+++|++|+|++|.+
T Consensus 49 ~L~~L~ls~n~---l---------~~-l~-~~--~~l~~L~~L~l~~n~l 82 (198)
T 1ds9_A 49 ACKHLALSTNN---I---------EK-IS-SL--SGMENLRILSLGRNLI 82 (198)
T ss_dssp TCSEEECSEEE---E---------SC-CC-CH--HHHTTCCEEEEEEEEE
T ss_pred CCCEEECCCCC---C---------cc-cc-cc--ccCCCCCEEECCCCCc
Confidence 56677777766 5 23 66 66 7888888888887753
No 112
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=84.72 E-value=0.74 Score=33.99 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=10.7
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
..+++|++|+|++|++
T Consensus 104 ~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQI 119 (308)
T ss_dssp TTCTTCCEEECTTSCC
T ss_pred cCCCCCCEEECCCCCC
Confidence 6667777777776653
No 113
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=84.63 E-value=0.66 Score=39.17 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=14.7
Q ss_pred cccccccc--cccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMS--LLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~--l~~~~l~~L~~LdLs~N~l 130 (130)
+++.+|.. + +++++|++|||++|++
T Consensus 109 l~~~~~~~~~~--~~L~~L~~L~Ls~N~l 135 (844)
T 3j0a_A 109 LSDAVLKDGYF--RNLKALTRLDLSKNQI 135 (844)
T ss_dssp CSSCCSTTCCC--SSCSSCCEEEEESCCC
T ss_pred CCcccccCccc--cccCCCCEEECCCCcc
Confidence 34444443 4 6677777777776653
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=84.25 E-value=0.78 Score=37.53 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=19.4
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.||..+ ..+++|++|+|++|.|
T Consensus 221 ~lp~~l--~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 221 HIPENI--LSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCCGGG--GGSCTTEEEECCSSSC
T ss_pred ecCHHH--hcCCCCCEEEeeCCcC
Confidence 688888 7899999999999975
No 115
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=83.58 E-value=0.86 Score=37.61 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.6
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|..+ ..+++|+.|+|++|.+
T Consensus 275 ~lp~~l--~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 275 RLPESL--IHLSSETTVNLEGNPL 296 (622)
T ss_dssp SCCGGG--GGSCTTCEEECCSCCC
T ss_pred cCCHHH--hhccccCEEEecCCCC
Confidence 778888 8999999999999975
No 116
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=83.46 E-value=0.88 Score=33.34 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=11.4
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
..+++|++|+|++|++
T Consensus 109 ~~l~~L~~L~L~~n~i 124 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGI 124 (291)
T ss_dssp TTCTTCCEEECTTSCC
T ss_pred ccCCCCCEEECCCCcC
Confidence 6777777777777754
No 117
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=82.58 E-value=0.6 Score=37.93 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=18.2
Q ss_pred cccc-ccccccCccCCeEeCCCCCC
Q 039136 107 FLNM-SLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~-~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|+ .+ +.+++|++|+|++|++
T Consensus 87 ~l~~~~~--~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 87 QLSDKTF--AFCTNLTELHLMSNSI 109 (680)
T ss_dssp CCCTTTT--TTCTTCSEEECCSSCC
T ss_pred ccChhhh--ccCCCCCEEECCCCcc
Confidence 4555 56 8999999999999975
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=82.44 E-value=1 Score=35.39 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=18.2
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+++ +| ++ +++++|++|++++|++
T Consensus 143 l~~-lp-~~--~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 143 LEK-LP-EL--QNSSFLKIIDVDNNSL 165 (454)
T ss_dssp CSS-CC-CC--TTCTTCCEEECCSSCC
T ss_pred CCC-Cc-cc--CCCCCCCEEECCCCcC
Confidence 344 77 57 8999999999999875
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=82.06 E-value=0.6 Score=35.34 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=11.7
Q ss_pred cccccccccccCccCCeEeCCCCC
Q 039136 106 SFLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 106 G~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
+.+|..+ ..+++|++|+|++|.
T Consensus 234 ~~l~~~l--~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 234 SALAIAL--KSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHG--GGCTTCCEEECTTCC
T ss_pred HHHHHHH--ccCCCcCEEECCCCC
Confidence 3444444 555555555555554
No 120
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=81.68 E-value=1.1 Score=32.85 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=10.8
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
..+++|++|+|++|.+
T Consensus 175 ~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHI 190 (291)
T ss_dssp TTCTTCCEEECCSSCC
T ss_pred cCCCccCEEECCCCcC
Confidence 6667777777776654
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=81.53 E-value=0.48 Score=37.25 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=5.9
Q ss_pred ccccccccccC-------------ccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPF-------------EELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l-------------~~L~~LdLs~N~l 130 (130)
.+|..+ +.| ++|++||+++|++
T Consensus 374 ~ip~~l--~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 374 DIPESV--EDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CCCTTC--CEEECCC----------------------
T ss_pred CChHHH--HhhhhcccccccccccCcCCEEECCCCcC
Confidence 566666 666 6788888888764
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=80.97 E-value=0.58 Score=35.39 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=22.8
Q ss_pred CceEEEecCCCCCcccCCCCCCccccc--ccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVS--FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G--~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.++..|+|+++. +++ .| .+|..+ ..+++|++|+|++|.+
T Consensus 94 ~~L~~L~Ls~n~---l~~-------~~~~~l~~~l--~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 94 PKLHTVRLSDNA---FGP-------TAQEPLIDFL--SKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTCCEEECCSCC---CCT-------TTHHHHHHHH--HHCTTCCEEECCSSCC
T ss_pred CcccEEECCCCc---CCH-------HHHHHHHHHH--HhCCCCCEEECcCCCC
Confidence 456677777766 531 01 355555 6666666666666653
No 123
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=80.74 E-value=0.95 Score=33.45 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=16.9
Q ss_pred cccccccccccccCccCCeEeCCCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
+++..| + ..+++|++||+++|.+
T Consensus 323 l~~~~~--~--~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 323 ITDIRP--L--ASLSKMDSADFANQVI 345 (347)
T ss_dssp CCCCGG--G--GGCTTCSEESSSCC--
T ss_pred cccccC--h--hhhhccceeehhhhcc
Confidence 345444 6 8899999999999975
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=80.18 E-value=0.68 Score=34.03 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=11.8
Q ss_pred ccccccccccccCccCCeEeCCCC
Q 039136 105 VSFLNMSLLFHPFEELQRLDLSDK 128 (130)
Q Consensus 105 ~G~ip~~l~~~~l~~L~~LdLs~N 128 (130)
++.++..+ +.+++|++|+|++|
T Consensus 131 ~~~~~~~l--~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 131 SDPIVNTL--AKNSNLVRLNLSGC 152 (336)
T ss_dssp CHHHHHHH--TTCTTCSEEECTTC
T ss_pred CHHHHHHH--hcCCCCCEEECCCC
Confidence 34444444 55556666666555
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=80.05 E-value=1.4 Score=34.61 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=12.2
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
+.+++|++|||++|++
T Consensus 82 ~~l~~L~~L~Ls~N~l 97 (457)
T 3bz5_A 82 SQNTNLTYLACDSNKL 97 (457)
T ss_dssp TTCTTCSEEECCSSCC
T ss_pred ccCCCCCEEECcCCCC
Confidence 7778888888887764
No 126
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=78.15 E-value=1.7 Score=31.98 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=6.5
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|+|++|+
T Consensus 192 ~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQ 206 (308)
T ss_dssp GGCTTCCEEECTTSC
T ss_pred cCCCCCCEEEccCCc
Confidence 344444444444443
No 127
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=77.99 E-value=1.5 Score=36.05 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=9.7
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
..+++|+.|+|++|++
T Consensus 172 ~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHI 187 (605)
T ss_dssp TTCTTCCEEECCSSCC
T ss_pred ccCCCCCEEECcCCCC
Confidence 5666666666666653
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=77.79 E-value=0.73 Score=35.38 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=18.0
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|..+ ..+++|++|||++|++
T Consensus 389 ~l~~~l--~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 389 SLAATL--LANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHH--HHCCCCCEEECCSSSC
T ss_pred HHHHHH--HhCCCccEEECCCCCC
Confidence 677777 7888999999998875
No 129
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=76.51 E-value=1.8 Score=33.95 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=11.2
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
+.+++|++|++++|++
T Consensus 230 ~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPL 245 (457)
T ss_dssp TTCTTCSEEECCSSCC
T ss_pred cccCCCCEEEeeCCcC
Confidence 6677777777777754
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=76.35 E-value=2.1 Score=31.29 Aligned_cols=23 Identities=22% Similarity=0.027 Sum_probs=14.6
Q ss_pred cccccccccccccCccCCeEeCCCC
Q 039136 104 GVSFLNMSLLFHPFEELQRLDLSDK 128 (130)
Q Consensus 104 ~~G~ip~~l~~~~l~~L~~LdLs~N 128 (130)
+++..+..+ +.+++|++|++++|
T Consensus 235 l~~~~~~~l--~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 235 LKNDCFQEF--FQLNYLQHLSLSRC 257 (336)
T ss_dssp CCGGGGGGG--GGCTTCCEEECTTC
T ss_pred CCHHHHHHH--hCCCCCCEeeCCCC
Confidence 344555566 66777777777766
No 131
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=76.09 E-value=1.1 Score=34.27 Aligned_cols=40 Identities=33% Similarity=0.519 Sum_probs=26.2
Q ss_pred ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++..|++.++. ++. .....++..+ ..+++|++|||++|.+
T Consensus 86 ~L~~L~L~~n~---i~~-----~~~~~l~~~l--~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 86 KIQKLSLQNCC---LTG-----AGCGVLSSTL--RTLPTLQELHLSDNLL 125 (461)
T ss_dssp CCCEEECTTSC---CBG-----GGHHHHHHHT--TSCTTCCEEECCSSBC
T ss_pred ceeEEEccCCC---CCH-----HHHHHHHHHH--ccCCceeEEECCCCcC
Confidence 47788888877 630 0002556666 7788888888887764
No 132
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=75.59 E-value=2.1 Score=33.23 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=11.2
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
+.+++|++|++++|++
T Consensus 109 ~~l~~L~~L~L~~n~l 124 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQI 124 (466)
T ss_dssp TTCTTCCEEECCSSCC
T ss_pred cCCCCCCEEECCCCCC
Confidence 6777777777777653
No 133
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=73.38 E-value=2.4 Score=34.75 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=11.9
Q ss_pred ccCccCCeEeCCCCCC
Q 039136 115 HPFEELQRLDLSDKLV 130 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~l 130 (130)
..+++|++|+|++|.+
T Consensus 106 ~~l~~L~~L~Ls~N~l 121 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGI 121 (605)
T ss_dssp TTCTTCCEEECTTSCC
T ss_pred ccCCCCCEEEecCCCC
Confidence 6777777777777764
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=72.93 E-value=1 Score=33.86 Aligned_cols=13 Identities=23% Similarity=0.044 Sum_probs=8.2
Q ss_pred ccCCeEeCCCCCC
Q 039136 118 EELQRLDLSDKLV 130 (130)
Q Consensus 118 ~~L~~LdLs~N~l 130 (130)
++|++|||++|.+
T Consensus 109 ~~L~~L~Ls~N~l 121 (362)
T 3goz_A 109 FTITVLDLGWNDF 121 (362)
T ss_dssp TTCCEEECCSSCG
T ss_pred CCccEEECcCCcC
Confidence 5666666666653
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=72.90 E-value=0.24 Score=34.09 Aligned_cols=22 Identities=14% Similarity=-0.009 Sum_probs=16.4
Q ss_pred ccccccccccCccCCeEeCCCCCC
Q 039136 107 FLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 107 ~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.+|..+ ..+++|++|+|++|++
T Consensus 84 ~l~~~~--~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 84 KIENLD--AVADTLEELWISYNQI 105 (198)
T ss_dssp SCSSHH--HHHHHCSEEEEEEEEC
T ss_pred cccchh--hcCCcCCEEECcCCcC
Confidence 567666 6778888888888764
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=71.51 E-value=1.6 Score=32.72 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=23.6
Q ss_pred ceEEEecCCCCCcccCCCCCCcccccccccccccccC-----ccCCeEeCCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPF-----EELQRLDLSDKLV 130 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l-----~~L~~LdLs~N~l 130 (130)
++..|+++++. + ++..+..+ +.+ ++|++|||++|++
T Consensus 52 ~L~~L~Ls~N~---l---------~~~~~~~l--~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 52 SVTSLNLSGNS---L---------GFKNSDEL--VQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp TCCEEECCSSC---G---------GGSCHHHH--HHHHHTSCTTCCEEECCSSCG
T ss_pred ceeEEECcCCC---C---------CHHHHHHH--HHHHhccCCCccEEECcCCcC
Confidence 56777777766 5 34444444 444 7888888888864
No 137
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=70.76 E-value=3.2 Score=32.16 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=8.4
Q ss_pred ccCccCCeEeCCCCC
Q 039136 115 HPFEELQRLDLSDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdLs~N~ 129 (130)
..+++|++|++++|+
T Consensus 87 ~~l~~L~~L~l~~n~ 101 (466)
T 1o6v_A 87 KNLTKLVDILMNNNQ 101 (466)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hccccCCEEECCCCc
Confidence 555555555555554
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=58.97 E-value=3.6 Score=31.41 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=6.3
Q ss_pred cCccCCeEeCCCCC
Q 039136 116 PFEELQRLDLSDKL 129 (130)
Q Consensus 116 ~l~~L~~LdLs~N~ 129 (130)
.++.|++|||++|.
T Consensus 181 ~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 181 GNTSVTHLSLLHTG 194 (372)
T ss_dssp TCSSCCEEECTTSS
T ss_pred cCCCcCEEeCCCCC
Confidence 34444444444443
No 139
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=58.24 E-value=8.6 Score=28.29 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=24.4
Q ss_pred CceEEEecCCCCCcccCCCCCCcccccccccccccccCc--cCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFE--ELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~--~L~~LdLs~N~l 130 (130)
.++..|+|+++. ++ +. .++ ..+. +|++|+|++|.+
T Consensus 196 ~~L~~L~Ls~N~---i~---------~~--~~l--~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 196 PNLKILNLSGNE---LK---------SE--REL--DKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp TTCCEEECTTSC---CC---------SG--GGG--GGGTTSCCSEEECTTSTT
T ss_pred CCCCEEECCCCc---cC---------Cc--hhh--hhcccCCcceEEccCCcC
Confidence 468889999998 74 22 223 3344 899999999864
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=57.69 E-value=3.6 Score=31.45 Aligned_cols=14 Identities=21% Similarity=0.064 Sum_probs=7.0
Q ss_pred cCccCCeEeCCCCC
Q 039136 116 PFEELQRLDLSDKL 129 (130)
Q Consensus 116 ~l~~L~~LdLs~N~ 129 (130)
..+.|++|||++|.
T Consensus 237 ~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 237 EHPSLELLHLYFNE 250 (372)
T ss_dssp HCSSCCEEECTTSS
T ss_pred hCCCCCEEeccCCC
Confidence 34455555555554
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=52.79 E-value=4.2 Score=32.12 Aligned_cols=10 Identities=20% Similarity=0.039 Sum_probs=5.4
Q ss_pred eEEEecCCCC
Q 039136 82 VTQLSLNQKT 91 (130)
Q Consensus 82 V~~L~L~~~~ 91 (130)
+..|++..++
T Consensus 465 L~~L~L~~n~ 474 (592)
T 3ogk_B 465 VRWMLLGYVG 474 (592)
T ss_dssp CCEEEECSCC
T ss_pred ceEeeccCCC
Confidence 4555555554
No 142
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=52.15 E-value=9.4 Score=31.37 Aligned_cols=11 Identities=9% Similarity=0.114 Sum_probs=7.0
Q ss_pred ceEEEecCCCC
Q 039136 81 RVTQLSLNQKT 91 (130)
Q Consensus 81 rV~~L~L~~~~ 91 (130)
.++.+++.+++
T Consensus 41 ~l~~L~ls~n~ 51 (622)
T 3g06_A 41 GNAVLNVGESG 51 (622)
T ss_dssp CCCEEECCSSC
T ss_pred CCcEEEecCCC
Confidence 35666666666
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=50.90 E-value=11 Score=27.53 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=18.9
Q ss_pred ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDK 128 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N 128 (130)
.++.+++.+++ + -.||... |.++.+|+.|+|++|
T Consensus 227 ~L~~l~L~~n~---i----------~~I~~~a-F~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 227 NLVSLDISKTN---A----------TTIPDFT-FAQKKYLLKIKLPHN 260 (329)
T ss_dssp TCCEEECTTBC---C----------CEECTTT-TTTCTTCCEEECCTT
T ss_pred CCeEEECCCCC---c----------ceecHhh-hhCCCCCCEEECCcc
Confidence 57777777765 4 2344332 355555555555544
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=49.36 E-value=2.8 Score=33.19 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=26.9
Q ss_pred CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.++..|++.++. ++ ...++..+ ..+++|++|+|++|++
T Consensus 488 ~~L~~L~l~~n~---l~--------~~~~~~~~--~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 488 PNLQKLEMRGCC---FS--------ERAIAAAV--TKLPSLRYLWVQGYRA 525 (592)
T ss_dssp TTCCEEEEESCC---CB--------HHHHHHHH--HHCSSCCEEEEESCBC
T ss_pred cccCeeeccCCC---Cc--------HHHHHHHH--HhcCccCeeECcCCcC
Confidence 357788888877 62 23344444 6789999999999864
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=46.30 E-value=5.5 Score=30.49 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=13.2
Q ss_pred cccccccccCccCCeEeCCCCCC
Q 039136 108 LNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 108 ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
++..+ ..+++|+.|||++|.+
T Consensus 299 L~~~L--~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 299 LLDHV--DKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHTTH--HHHTTCSEEECCSBBC
T ss_pred HHhhc--ccCCcceEEECCCCcC
Confidence 34444 4567777777777753
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=43.22 E-value=15 Score=24.80 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=7.6
Q ss_pred ccCccCCeEeC--CCCC
Q 039136 115 HPFEELQRLDL--SDKL 129 (130)
Q Consensus 115 ~~l~~L~~LdL--s~N~ 129 (130)
...+.|++|+| ++|.
T Consensus 118 ~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQP 134 (185)
T ss_dssp GGCSSCCEEECCCCSSC
T ss_pred HhCCCceEEEecCCCCC
Confidence 44445555555 4444
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=37.73 E-value=18 Score=26.51 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=23.1
Q ss_pred ceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCC
Q 039136 81 RVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKL 129 (130)
Q Consensus 81 rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~ 129 (130)
.++.|.+.. . + -.|+..- |..|++|+.|++++|.
T Consensus 102 ~L~~l~L~~-~---i----------~~I~~~a-F~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 102 TLEKVILSE-K---I----------KNIEDAA-FKGCDNLKICQIRKKT 135 (329)
T ss_dssp TCCC-CBCT-T---C----------CEECTTT-TTTCTTCCEEEBCCSS
T ss_pred CCcEEECCc-c---c----------cchhHHH-hhcCcccceEEcCCCC
Confidence 456666666 4 4 3465543 4889999999999886
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=34.69 E-value=31 Score=23.74 Aligned_cols=35 Identities=6% Similarity=0.264 Sum_probs=21.4
Q ss_pred CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDK 128 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N 128 (130)
-++.+|++++.. ++. .|- ..+ ..+++|++|+|+++
T Consensus 61 ~~L~~LDLs~~~---Itd-------~GL--~~L--~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 61 YKIQAIDATDSC---IMS-------IGF--DHM--EGLQYVEKIRLCKC 95 (176)
T ss_dssp CCEEEEEEESCC---CCG-------GGG--GGG--TTCSCCCEEEEESC
T ss_pred ceEeEEeCcCCC---ccH-------HHH--HHh--cCCCCCCEEEeCCC
Confidence 468888888876 531 111 234 56677777777665
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=30.63 E-value=9 Score=30.14 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=5.4
Q ss_pred CccCCeEeCCCC
Q 039136 117 FEELQRLDLSDK 128 (130)
Q Consensus 117 l~~L~~LdLs~N 128 (130)
+++|++|++++|
T Consensus 505 l~~L~~L~l~~~ 516 (594)
T 2p1m_B 505 LETMRSLWMSSC 516 (594)
T ss_dssp GGGSSEEEEESS
T ss_pred CCCCCEEeeeCC
Confidence 444444444444
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=25.49 E-value=19 Score=28.23 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=26.9
Q ss_pred CceEEEecCCCCCcccCCCCCCcccccccccccccccCccCCeEeCCCCCC
Q 039136 80 LRVTQLSLNQKTKINYSDYNSYSYGVSFLNMSLLFHPFEELQRLDLSDKLV 130 (130)
Q Consensus 80 ~rV~~L~L~~~~~~~l~~~~~~~~~~G~ip~~l~~~~l~~L~~LdLs~N~l 130 (130)
.++..+++..+. + ++.....+ +..+++|++|+|++|.+
T Consensus 456 ~~L~~L~L~~~~---i---------~~~~~~~l-~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 456 KKMEMLSVAFAG---D---------SDLGMHHV-LSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TTCCEEEEESCC---S---------SHHHHHHH-HHHCTTCCEEEEESCSC
T ss_pred hhccEeeccCCC---C---------cHHHHHHH-HhcCCCcCEEECcCCCC
Confidence 357888888887 6 34333333 25689999999999974
No 151
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=21.20 E-value=35 Score=23.91 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=7.0
Q ss_pred ceEEEecCCCC
Q 039136 81 RVTQLSLNQKT 91 (130)
Q Consensus 81 rV~~L~L~~~~ 91 (130)
.++.|+|.++.
T Consensus 71 ~L~~L~L~~n~ 81 (197)
T 1pgv_A 71 HIEKFSLANTA 81 (197)
T ss_dssp CCCEEECTTSC
T ss_pred CcCEEEccCCC
Confidence 46666666666
Done!