BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039138
         (177 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TY7|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase Family Protein
           From Staphylococcus Aureus
 pdb|3TY7|B Chain B, Crystal Structure Of Aldehyde Dehydrogenase Family Protein
           From Staphylococcus Aureus
          Length = 478

 Score = 30.0 bits (66), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 49  TGTVTLRWSAGNLNRLSDDLG--SP--IHDDLDVLEMEERE--KVVKHMWDVYTNSRRIR 102
           TG+     +A +  ++S +LG  SP  + DD+D+ E  +    KVV +   V T   R+ 
Sbjct: 230 TGSKIXEKAAKDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVL 289

Query: 103 LPRFWQEAFEAAYEELSSDV 122
           +P   ++AF A  +E  S V
Sbjct: 290 VPNKIKDAFLAELKEQFSQV 309


>pdb|3BLN|A Chain A, Crystal Structure Of Acetyltransferase Gnat Family
          (Np_981174.1) From Bacillus Cereus Atcc 10987 At 1.31 A
          Resolution
          Length = 143

 Score = 29.6 bits (65), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 66 DDLGSPIHDDLDVLEMEEREKVVKHMWD 93
          DDL S +H D+DV+  + R   +KH  D
Sbjct: 11 DDLDSIVHIDIDVIGNDSRRNYIKHSID 38


>pdb|3KA8|A Chain A, Frog M-Ferritin, Eqh Mutant, With Cobalt
          Length = 176

 Score = 26.9 bits (58), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 53  TLRWSAGNLNRLSDDLGSP-IHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLP 104
           T+  +  +L++L+ D   P + D L+   +EE+ K +K + D  TN +R+ LP
Sbjct: 106 TVNQALLDLHKLATDKVDPHLCDFLESEYLEEQVKHIKRIGDFITNLKRLGLP 158


>pdb|1MFR|A Chain A, Crystal Structure Of M Ferritin
 pdb|1MFR|B Chain B, Crystal Structure Of M Ferritin
 pdb|1MFR|C Chain C, Crystal Structure Of M Ferritin
 pdb|1MFR|D Chain D, Crystal Structure Of M Ferritin
 pdb|1MFR|E Chain E, Crystal Structure Of M Ferritin
 pdb|1MFR|F Chain F, Crystal Structure Of M Ferritin
 pdb|1MFR|G Chain G, Crystal Structure Of M Ferritin
 pdb|1MFR|H Chain H, Crystal Structure Of M Ferritin
 pdb|1MFR|I Chain I, Crystal Structure Of M Ferritin
 pdb|1MFR|J Chain J, Crystal Structure Of M Ferritin
 pdb|1MFR|K Chain K, Crystal Structure Of M Ferritin
 pdb|1MFR|L Chain L, Crystal Structure Of M Ferritin
 pdb|1MFR|M Chain M, Crystal Structure Of M Ferritin
 pdb|1MFR|N Chain N, Crystal Structure Of M Ferritin
 pdb|1MFR|O Chain O, Crystal Structure Of M Ferritin
 pdb|1MFR|P Chain P, Crystal Structure Of M Ferritin
 pdb|1MFR|Q Chain Q, Crystal Structure Of M Ferritin
 pdb|1MFR|R Chain R, Crystal Structure Of M Ferritin
 pdb|1MFR|S Chain S, Crystal Structure Of M Ferritin
 pdb|1MFR|T Chain T, Crystal Structure Of M Ferritin
 pdb|1MFR|U Chain U, Crystal Structure Of M Ferritin
 pdb|1MFR|V Chain V, Crystal Structure Of M Ferritin
 pdb|1MFR|W Chain W, Crystal Structure Of M Ferritin
 pdb|1MFR|X Chain X, Crystal Structure Of M Ferritin
 pdb|3KA3|A Chain A, Frog M-Ferritin With Magnesium
 pdb|3KA4|A Chain A, Frog M-Ferritin With Cobalt
 pdb|3RBC|A Chain A, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|B Chain B, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|C Chain C, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|D Chain D, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|E Chain E, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|F Chain F, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|G Chain G, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|H Chain H, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|I Chain I, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|J Chain J, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|K Chain K, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|L Chain L, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|M Chain M, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|N Chain N, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|O Chain O, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|P Chain P, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|Q Chain Q, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|R Chain R, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|S Chain S, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|T Chain T, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|U Chain U, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|V Chain V, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|W Chain W, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RBC|X Chain X, Bullfrog M Ferritin With Iron(Iii) Bound To The
           Ferroxidase Site
 pdb|3RE7|A Chain A, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|B Chain B, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|C Chain C, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|D Chain D, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|E Chain E, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|F Chain F, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|G Chain G, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|H Chain H, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|I Chain I, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|J Chain J, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|K Chain K, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|L Chain L, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|M Chain M, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|N Chain N, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|O Chain O, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|P Chain P, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|Q Chain Q, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|R Chain R, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|S Chain S, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|T Chain T, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|U Chain U, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|V Chain V, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|W Chain W, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RE7|X Chain X, Copper (Ii) Loaded Bullfrog Ferritin M Chain
 pdb|3RGD|A Chain A, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|B Chain B, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|C Chain C, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|D Chain D, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|E Chain E, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|F Chain F, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|G Chain G, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|H Chain H, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|I Chain I, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|J Chain J, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|K Chain K, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|L Chain L, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|M Chain M, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|N Chain N, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|O Chain O, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|P Chain P, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|Q Chain Q, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|R Chain R, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|S Chain S, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|T Chain T, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|U Chain U, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|V Chain V, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|W Chain W, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|3RGD|X Chain X, Iron Loaded Frog M Ferritin. Short Soaking Time
 pdb|4DAS|A Chain A, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|B Chain B, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|C Chain C, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|D Chain D, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|E Chain E, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|F Chain F, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|G Chain G, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|H Chain H, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|I Chain I, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|J Chain J, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|K Chain K, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|L Chain L, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|M Chain M, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|N Chain N, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|O Chain O, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|P Chain P, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|Q Chain Q, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|R Chain R, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|S Chain S, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|T Chain T, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|U Chain U, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|V Chain V, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|X Chain X, Crystal Structure Of Bullfrog M Ferritin
 pdb|4DAS|W Chain W, Crystal Structure Of Bullfrog M Ferritin
          Length = 176

 Score = 26.6 bits (57), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 53  TLRWSAGNLNRLSDDLGSP-IHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLP 104
           T+  +  +L++L+ D   P + D L+   +EE+ K +K + D  TN +R+ LP
Sbjct: 106 TVNQALLDLHKLATDKVDPHLCDFLESEYLEEQVKDIKRIGDFITNLKRLGLP 158


>pdb|3SE1|A Chain A, Frog M-Ferritin With Magnesium, R72d Mutant
          Length = 176

 Score = 26.6 bits (57), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 53  TLRWSAGNLNRLSDDLGSP-IHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLP 104
           T+  +  +L++L+ D   P + D L+   +EE+ K +K + D  TN +R+ LP
Sbjct: 106 TVNQALLDLHKLATDKVDPHLCDFLESEYLEEQVKDIKRIGDFITNLKRLGLP 158


>pdb|3SH6|A Chain A, Frog M-Ferritin, D122r Mutant, With Magnesium
          Length = 176

 Score = 26.6 bits (57), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 53  TLRWSAGNLNRLSDDLGSP-IHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLP 104
           T+  +  +L++L+ D   P + D L+   +EE+ K +K + D  TN +R+ LP
Sbjct: 106 TVNQALLDLHKLATDKVRPHLCDFLESEYLEEQVKDIKRIGDFITNLKRLGLP 158


>pdb|3KA9|A Chain A, Frog M-Ferritin, Eeh Mutant, With Cobalt
          Length = 176

 Score = 26.2 bits (56), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 53  TLRWSAGNLNRLSDDLGSP-IHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLP 104
           T+  +  +L++L+ D   P + D L+   +EE  K +K + D  TN +R+ LP
Sbjct: 106 TVNQALLDLHKLATDKVDPHLCDFLESEYLEEEVKHIKRIGDFITNLKRLGLP 158


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.128    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,689,520
Number of Sequences: 62578
Number of extensions: 165447
Number of successful extensions: 341
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 10
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)