Query 039138
Match_columns 177
No_of_seqs 29 out of 31
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 10:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zd7_A VPS75, vacuolar protein 37.0 20 0.00068 29.5 2.6 28 86-113 35-64 (264)
2 2e50_A Protein SET; histone ch 31.4 26 0.0009 28.1 2.5 43 72-114 38-89 (225)
3 3ehc_A Snoal-like polyketide c 24.9 28 0.00096 23.1 1.3 27 81-107 2-28 (128)
4 3kyp_A Pfnaps, nucleosome asse 24.7 31 0.0011 27.0 1.7 43 72-114 8-59 (193)
5 2jdq_A Importin alpha-1 subuni 23.0 52 0.0018 25.3 2.6 35 102-136 10-47 (450)
6 3u0r_A Apoptosis inhibitor 5; 21.3 63 0.0021 29.8 3.2 36 103-138 52-94 (507)
7 1eys_H Photosynthetic reaction 20.0 45 0.0015 28.1 1.9 17 36-52 11-27 (259)
8 2wjn_H Reaction center protein 17.9 54 0.0018 27.8 1.9 17 36-52 12-28 (258)
9 1rzh_H Reaction center protein 17.6 55 0.0019 27.8 1.9 17 36-52 12-28 (260)
10 1te4_A Conserved protein MTH18 17.2 1.5E+02 0.0053 19.6 3.8 30 108-137 72-101 (131)
No 1
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=37.02 E-value=20 Score=29.48 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=16.8
Q ss_pred HHHhHhhhhhcCCCC--cCcchHHHHHHHH
Q 039138 86 KVVKHMWDVYTNSRR--IRLPRFWQEAFEA 113 (177)
Q Consensus 86 KvVr~MWDvYt~s~~--vrLprFWqEAFeA 113 (177)
|-.+.+=.+|..-+. -++|.||--||..
T Consensus 35 ky~~~~~Ply~kR~eII~~IP~FWltal~n 64 (264)
T 2zd7_A 35 YRLNKMKPVYEKRDAYIDEIAEFWKIVLSQ 64 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHhcchhHHHHHHHc
Confidence 333444445544211 1689999999975
No 2
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=31.36 E-value=26 Score=28.14 Aligned_cols=43 Identities=19% Similarity=0.526 Sum_probs=24.8
Q ss_pred CCCCCchhhHHHHHHHH-------hHhhhhhcCCCC--cCcchHHHHHHHHH
Q 039138 72 IHDDLDVLEMEEREKVV-------KHMWDVYTNSRR--IRLPRFWQEAFEAA 114 (177)
Q Consensus 72 ~~dDlDvLEmEeREKvV-------r~MWDvYt~s~~--vrLprFWqEAFeAA 114 (177)
++.++|-||.+-.+++. +.+=-+|..-+. -++|.||--||...
T Consensus 38 iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~IP~FW~tal~n~ 89 (225)
T 2e50_A 38 VQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNH 89 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccccHHHHHHhcC
Confidence 34456666655444433 234445543211 26899999999863
No 3
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=24.86 E-value=28 Score=23.06 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=19.1
Q ss_pred HHHHHHHHhHhhhhhcCCCCcCcchHH
Q 039138 81 MEEREKVVKHMWDVYTNSRRIRLPRFW 107 (177)
Q Consensus 81 mEeREKvVr~MWDvYt~s~~vrLprFW 107 (177)
|++-+.+|+++++.+.+.+--.+..|+
T Consensus 2 m~~~~~~v~~~~~~~~~~d~~~~~~~~ 28 (128)
T 3ehc_A 2 MQTLNDIYLAYLDSLNHQAFDELGTFV 28 (128)
T ss_dssp CCCHHHHHHHHHHHHHTTCGGGGGGTE
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 567788999999988766544455554
No 4
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=24.69 E-value=31 Score=26.99 Aligned_cols=43 Identities=14% Similarity=0.448 Sum_probs=23.6
Q ss_pred CCCCCchhhHHHHHHHH-------hHhhhhhcCCC--CcCcchHHHHHHHHH
Q 039138 72 IHDDLDVLEMEEREKVV-------KHMWDVYTNSR--RIRLPRFWQEAFEAA 114 (177)
Q Consensus 72 ~~dDlDvLEmEeREKvV-------r~MWDvYt~s~--~vrLprFWqEAFeAA 114 (177)
+++++|-|+.|-.+++. +.+=.+|..-+ --++|.||--||...
T Consensus 8 iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~IP~FW~t~l~n~ 59 (193)
T 3kyp_A 8 IQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKH 59 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcCCccHHHHHHHcC
Confidence 34556666655444333 22334453321 116899999999763
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=23.04 E-value=52 Score=25.25 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=23.1
Q ss_pred CcchHHHHH---HHHHHHHhhcchhhhHHHHHHHHHhh
Q 039138 102 RLPRFWQEA---FEAAYEELSSDVAEVRDAAITEIAKM 136 (177)
Q Consensus 102 rLprFWqEA---FeAAYeeL~sD~~~vrdaAisEIAkm 136 (177)
.+..-|.+. +....+.|.++.+.||..|+..+.++
T Consensus 10 ~~~~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l 47 (450)
T 2jdq_A 10 INNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKL 47 (450)
T ss_dssp ------------CHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred hhHHhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 445567766 77778888999999999999999886
No 6
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=21.26 E-value=63 Score=29.84 Aligned_cols=36 Identities=22% Similarity=0.512 Sum_probs=30.3
Q ss_pred cchHH-------HHHHHHHHHHhhcchhhhHHHHHHHHHhhhh
Q 039138 103 LPRFW-------QEAFEAAYEELSSDVAEVRDAAITEIAKMSV 138 (177)
Q Consensus 103 LprFW-------qEAFeAAYeeL~sD~~~vrdaAisEIAkmS~ 138 (177)
+|||| .+||.|-+.-...|+.+||-.||.+|....-
T Consensus 52 I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck 94 (507)
T 3u0r_A 52 IPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFAT 94 (507)
T ss_dssp HHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCC
T ss_pred HHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhh
Confidence 57777 5899999998899999999999998876553
No 7
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=20.03 E-value=45 Score=28.08 Aligned_cols=17 Identities=41% Similarity=0.825 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhhceE
Q 039138 36 LAAILLLAFWSMFTGTV 52 (177)
Q Consensus 36 LaAIlLLAfWSMftgsV 52 (177)
+|-+.|-|||-.|+|-|
T Consensus 11 ~a~~~~~~fw~ffa~li 27 (259)
T 1eys_H 11 AAQITIWAFWLFFFGLI 27 (259)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57778888888888764
No 8
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=17.86 E-value=54 Score=27.82 Aligned_cols=17 Identities=24% Similarity=0.437 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhhceE
Q 039138 36 LAAILLLAFWSMFTGTV 52 (177)
Q Consensus 36 LaAIlLLAfWSMftgsV 52 (177)
+|-+.|-|||-.|+|-|
T Consensus 12 ~aq~~l~~Fw~ffa~Li 28 (258)
T 2wjn_H 12 IAQLVWYAQWLVIWTVV 28 (258)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67888999999999987
No 9
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=17.56 E-value=55 Score=27.82 Aligned_cols=17 Identities=29% Similarity=0.882 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhhceE
Q 039138 36 LAAILLLAFWSMFTGTV 52 (177)
Q Consensus 36 LaAIlLLAfWSMftgsV 52 (177)
+|-+.|-|||-.|+|-|
T Consensus 12 ~Aq~~l~~Fw~ffa~Li 28 (260)
T 1rzh_H 12 LASLAIYSFWIFLAGLI 28 (260)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788899999999865
No 10
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=17.21 E-value=1.5e+02 Score=19.58 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHhhh
Q 039138 108 QEAFEAAYEELSSDVAEVRDAAITEIAKMS 137 (177)
Q Consensus 108 qEAFeAAYeeL~sD~~~vrdaAisEIAkmS 137 (177)
.+++..-.+.|.+..+.||.+|+.=++++.
T Consensus 72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 456777777777889999999998888764
Done!