BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039144
         (208 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DA3|A Chain A, Solution Structure Of The Third Homeobox Domain Of At-
          Binding Transcription Factor 1 (Atbf1)
          Length = 80

 Score = 33.1 bits (74), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 8  RWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARE 64
          R   TPEQL IL + Y       +++  + +  H++H   ++ + V  WFQN +ARE
Sbjct: 21 RTTITPEQLEILYQKY-----LLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARE 72


>pdb|1TWU|A Chain A, 2.0 A Crystal Structure Of A Yyce Protein Of Unknown
           Function From Bacillus Subtilis, Putative
           GlyoxalaseFOSFOMYCIN RESISTANCE PROTEIN
          Length = 139

 Score = 28.1 bits (61), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 11/55 (20%)

Query: 4   AGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFG--KIEGKNVFYW 56
            GST   P P+ L++           PNA ++  IT+ L H G  ++E +N  YW
Sbjct: 68  GGSTAPVPHPDSLLVF--------YVPNAVELAAITSKLKHMGYQEVESENP-YW 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.130    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,454,170
Number of Sequences: 62578
Number of extensions: 174015
Number of successful extensions: 351
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 2
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)