Query 039144
Match_columns 208
No_of_seqs 125 out of 447
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 11:03:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cue_A Paired box protein PAX6 99.8 1.5E-21 5.2E-26 140.9 5.3 65 2-71 5-69 (80)
2 1zq3_P PRD-4, homeotic bicoid 99.8 1.3E-21 4.3E-26 137.6 4.3 63 3-70 1-63 (68)
3 1ig7_A Homeotic protein MSX-1; 99.8 1.1E-21 3.9E-26 133.0 3.8 57 5-66 1-57 (58)
4 2dmq_A LIM/homeobox protein LH 99.8 1.4E-21 4.8E-26 140.3 4.3 64 2-70 5-68 (80)
5 2dmu_A Homeobox protein goosec 99.8 1.5E-21 5.1E-26 137.3 3.8 62 2-68 5-66 (70)
6 2hdd_A Protein (engrailed home 99.8 1.2E-21 4E-26 134.7 3.0 59 3-66 2-60 (61)
7 2dms_A Homeobox protein OTX2; 99.8 1.2E-21 4.2E-26 141.2 2.6 63 2-69 5-67 (80)
8 1puf_A HOX-1.7, homeobox prote 99.8 3.8E-21 1.3E-25 138.0 5.1 65 2-71 11-75 (77)
9 2vi6_A Homeobox protein nanog; 99.8 9.5E-22 3.3E-26 135.5 1.9 60 3-67 2-61 (62)
10 1nk2_P Homeobox protein VND; h 99.8 3.3E-21 1.1E-25 138.3 4.6 64 3-71 8-71 (77)
11 2h1k_A IPF-1, pancreatic and d 99.8 2.6E-21 8.8E-26 134.0 3.8 61 3-68 2-62 (63)
12 2cra_A Homeobox protein HOX-B1 99.8 1.8E-21 6E-26 137.3 3.0 62 2-68 5-66 (70)
13 1jgg_A Segmentation protein EV 99.8 2E-21 6.9E-26 133.1 3.0 58 5-67 2-59 (60)
14 2e1o_A Homeobox protein PRH; D 99.8 4.1E-21 1.4E-25 135.4 4.4 62 2-68 5-66 (70)
15 2da1_A Alpha-fetoprotein enhan 99.8 2.2E-21 7.5E-26 136.2 2.7 62 2-68 5-66 (70)
16 2da2_A Alpha-fetoprotein enhan 99.8 2.7E-21 9.2E-26 135.8 3.0 62 2-68 5-66 (70)
17 2djn_A Homeobox protein DLX-5; 99.8 2.2E-21 7.5E-26 136.8 2.5 62 2-68 5-66 (70)
18 2da3_A Alpha-fetoprotein enhan 99.8 1.5E-21 5E-26 139.6 1.5 61 3-68 16-76 (80)
19 2l7z_A Homeobox protein HOX-A1 99.8 5.3E-21 1.8E-25 136.3 4.3 62 2-68 5-66 (73)
20 2da4_A Hypothetical protein DK 99.8 2.1E-21 7E-26 140.0 2.2 61 2-67 6-70 (80)
21 2dmt_A Homeobox protein BARH-l 99.8 3.3E-21 1.1E-25 139.1 3.2 61 3-68 16-76 (80)
22 1fjl_A Paired protein; DNA-bin 99.8 7.5E-21 2.6E-25 137.3 4.7 63 3-70 17-79 (81)
23 2kt0_A Nanog, homeobox protein 99.8 1.7E-21 5.8E-26 141.0 1.3 61 3-68 21-81 (84)
24 3a02_A Homeobox protein arista 99.8 3E-21 1E-25 132.3 2.4 59 6-69 1-59 (60)
25 1ahd_P Antennapedia protein mu 99.8 4.6E-21 1.6E-25 134.9 3.2 61 4-69 2-62 (68)
26 2k40_A Homeobox expressed in E 99.8 2.5E-21 8.6E-26 135.2 1.7 61 4-69 1-61 (67)
27 1bw5_A ISL-1HD, insulin gene e 99.8 4.3E-21 1.5E-25 133.6 2.7 60 4-68 3-62 (66)
28 2cuf_A FLJ21616 protein; homeo 99.8 1.1E-20 3.9E-25 140.5 5.0 68 2-70 5-83 (95)
29 3a01_A Homeodomain-containing 99.8 5.1E-21 1.7E-25 142.6 3.0 65 3-72 16-80 (93)
30 1wh5_A ZF-HD homeobox family p 99.8 3.8E-21 1.3E-25 140.5 2.2 60 2-66 15-78 (80)
31 1ftt_A TTF-1 HD, thyroid trans 99.8 5.3E-21 1.8E-25 134.4 2.5 62 4-70 2-63 (68)
32 1yz8_P Pituitary homeobox 2; D 99.8 3E-21 1E-25 135.4 1.1 63 3-70 2-64 (68)
33 3rkq_A Homeobox protein NKX-2. 99.8 1E-20 3.6E-25 127.1 3.6 57 4-65 2-58 (58)
34 2hi3_A Homeodomain-only protei 99.8 1.1E-20 3.7E-25 134.4 3.8 61 4-69 2-63 (73)
35 1b72_A Protein (homeobox prote 99.8 8.3E-21 2.8E-25 141.7 3.1 63 3-70 33-95 (97)
36 1b8i_A Ultrabithorax, protein 99.8 6.2E-21 2.1E-25 138.5 2.3 62 3-69 19-80 (81)
37 2r5y_A Homeotic protein sex co 99.8 5.8E-21 2E-25 140.1 1.9 61 3-68 27-87 (88)
38 2ly9_A Zinc fingers and homeob 99.8 1E-20 3.4E-25 134.1 3.0 63 1-68 3-65 (74)
39 1uhs_A HOP, homeodomain only p 99.8 2E-20 7E-25 132.4 4.3 59 5-68 2-61 (72)
40 2m0c_A Homeobox protein arista 99.8 7.5E-21 2.6E-25 134.2 1.7 62 3-69 8-69 (75)
41 1akh_A Protein (mating-type pr 99.8 1.3E-20 4.5E-25 128.9 2.1 58 3-65 4-61 (61)
42 3a03_A T-cell leukemia homeobo 99.8 2.1E-20 7.2E-25 127.0 3.1 54 9-67 2-55 (56)
43 2da6_A Hepatocyte nuclear fact 99.8 6.5E-20 2.2E-24 142.0 5.2 68 3-71 5-89 (102)
44 2da5_A Zinc fingers and homeob 99.8 3.2E-20 1.1E-24 133.0 3.1 62 4-70 7-68 (75)
45 2dn0_A Zinc fingers and homeob 99.8 2.2E-20 7.6E-25 133.7 2.1 63 2-69 6-68 (76)
46 1wh7_A ZF-HD homeobox family p 99.8 2.3E-20 7.8E-25 137.0 1.5 58 3-66 16-78 (80)
47 1du6_A PBX1, homeobox protein 99.8 2.7E-20 9.4E-25 128.6 1.6 60 2-66 1-63 (64)
48 1puf_B PRE-B-cell leukemia tra 99.8 5E-20 1.7E-24 130.5 2.5 62 4-70 1-65 (73)
49 2ecc_A Homeobox and leucine zi 99.8 1.2E-19 4.3E-24 133.7 3.9 59 4-67 3-61 (76)
50 1b72_B Protein (PBX1); homeodo 99.8 1.3E-19 4.5E-24 131.8 2.9 62 4-70 1-65 (87)
51 1k61_A Mating-type protein alp 99.8 2E-19 6.7E-24 122.9 2.9 55 7-66 1-58 (60)
52 1x2n_A Homeobox protein pknox1 99.8 3.4E-19 1.2E-23 126.2 4.0 62 2-68 5-69 (73)
53 1lfb_A Liver transcription fac 99.8 9.6E-20 3.3E-24 138.9 0.7 67 3-70 8-91 (99)
54 3nar_A ZHX1, zinc fingers and 99.7 3E-19 1E-23 133.2 2.8 60 4-68 25-84 (96)
55 1mnm_C Protein (MAT alpha-2 tr 99.7 5.3E-19 1.8E-23 129.3 3.2 59 2-65 25-86 (87)
56 2e19_A Transcription factor 8; 99.7 4.1E-19 1.4E-23 125.1 2.3 57 5-66 4-60 (64)
57 1au7_A Protein PIT-1, GHF-1; c 99.7 3.3E-19 1.1E-23 142.4 1.8 60 3-67 86-145 (146)
58 1e3o_C Octamer-binding transcr 99.7 6.4E-19 2.2E-23 142.1 2.8 60 3-67 100-159 (160)
59 3d1n_I POU domain, class 6, tr 99.7 1E-18 3.5E-23 139.3 3.4 59 3-66 92-150 (151)
60 2dmp_A Zinc fingers and homeob 99.7 1.1E-18 3.7E-23 129.3 3.3 60 6-70 15-74 (89)
61 2dmn_A Homeobox protein TGIF2L 99.7 2E-18 6.7E-23 126.3 4.2 64 2-69 5-70 (83)
62 2cqx_A LAG1 longevity assuranc 99.7 3.6E-19 1.2E-23 127.7 0.3 59 4-67 8-67 (72)
63 1le8_B Mating-type protein alp 99.7 1.7E-18 5.7E-23 126.2 2.9 59 5-68 3-64 (83)
64 2xsd_C POU domain, class 3, tr 99.7 1.3E-18 4.4E-23 141.7 2.1 63 3-70 98-160 (164)
65 2ecb_A Zinc fingers and homeob 99.7 2.2E-18 7.4E-23 129.7 3.1 58 7-69 14-71 (89)
66 1wi3_A DNA-binding protein SAT 99.7 2.1E-18 7.1E-23 126.9 2.8 59 2-65 5-64 (71)
67 2d5v_A Hepatocyte nuclear fact 99.7 2.2E-18 7.6E-23 138.3 2.0 62 3-69 96-157 (164)
68 3l1p_A POU domain, class 5, tr 99.7 3.9E-18 1.3E-22 137.1 2.4 60 3-67 95-154 (155)
69 2l9r_A Homeobox protein NKX-3. 99.7 2.5E-18 8.5E-23 123.6 0.8 55 10-69 10-64 (69)
70 3nau_A Zinc fingers and homeob 99.7 7.7E-18 2.6E-22 121.9 2.2 52 11-67 11-62 (66)
71 1x2m_A LAG1 longevity assuranc 99.6 9.7E-18 3.3E-22 119.9 -0.2 50 12-66 8-58 (64)
72 3k2a_A Homeobox protein MEIS2; 99.6 5.9E-17 2E-21 114.4 1.5 58 10-72 4-64 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 2.1E-16 7.1E-21 133.0 0.5 64 3-67 114-194 (194)
74 2da7_A Zinc finger homeobox pr 99.5 5.5E-15 1.9E-19 108.6 1.8 49 11-64 12-60 (71)
75 2h8r_A Hepatocyte nuclear fact 99.5 7.5E-15 2.6E-19 126.6 2.9 62 3-65 141-219 (221)
76 1mh3_A Maltose binding-A1 home 99.4 2.3E-14 7.8E-19 123.0 1.0 55 6-65 367-421 (421)
77 2lk2_A Homeobox protein TGIF1; 99.4 1.8E-13 6.2E-18 103.6 2.8 58 9-71 10-70 (89)
78 2nzz_A Penetratin conjugated G 98.7 7.4E-10 2.5E-14 72.2 -0.7 22 51-72 1-22 (37)
79 2ys9_A Homeobox and leucine zi 81.6 0.43 1.5E-05 34.8 0.9 39 15-58 17-55 (70)
80 3hug_A RNA polymerase sigma fa 79.1 1.1 3.7E-05 31.5 2.3 46 10-65 37-82 (92)
81 2glo_A Brinker CG9653-PA; prot 76.6 1.2 4.2E-05 29.1 1.9 46 7-58 2-47 (59)
82 1hlv_A CENP-B, major centromer 76.2 1.8 6E-05 31.7 2.8 51 6-64 3-53 (131)
83 3mzy_A RNA polymerase sigma-H 72.9 1.7 5.9E-05 31.5 2.1 41 10-61 109-149 (164)
84 1jko_C HIN recombinase, DNA-in 71.8 1.3 4.4E-05 26.7 1.0 42 10-61 5-46 (52)
85 2o8x_A Probable RNA polymerase 71.4 1.3 4.4E-05 28.7 0.9 42 10-61 15-56 (70)
86 2elh_A CG11849-PA, LD40883P; s 69.4 3.1 0.00011 29.2 2.7 42 6-57 18-59 (87)
87 1tc3_C Protein (TC3 transposas 67.1 3 0.0001 24.4 1.9 40 10-59 5-44 (51)
88 1p4w_A RCSB; solution structur 66.0 2.5 8.6E-05 31.0 1.7 49 3-62 27-75 (99)
89 1s7o_A Hypothetical UPF0122 pr 64.7 3.4 0.00012 30.9 2.2 49 10-68 22-70 (113)
90 3i5g_B Myosin regulatory light 62.6 13 0.00044 27.8 5.2 40 4-43 3-46 (153)
91 1xsv_A Hypothetical UPF0122 pr 60.5 9.8 0.00033 28.2 4.1 50 10-69 25-74 (113)
92 2lv7_A Calcium-binding protein 59.2 8.5 0.00029 27.5 3.4 51 5-57 24-78 (100)
93 1fi6_A EH domain protein REPS1 57.9 3.7 0.00013 28.4 1.3 42 9-54 1-46 (92)
94 1rp3_A RNA polymerase sigma fa 56.9 4.3 0.00015 31.4 1.6 47 10-66 187-233 (239)
95 1je8_A Nitrate/nitrite respons 56.2 2.9 0.0001 29.0 0.5 46 9-65 20-65 (82)
96 1fse_A GERE; helix-turn-helix 56.1 4.6 0.00016 26.2 1.5 48 7-65 8-55 (74)
97 1iuf_A Centromere ABP1 protein 55.3 7.7 0.00026 29.6 2.8 52 1-60 4-60 (144)
98 3nxc_A HTH-type protein SLMA; 55.2 3.1 0.00011 30.8 0.5 52 9-66 22-75 (212)
99 3ccy_A Putative TETR-family tr 54.2 7 0.00024 29.1 2.4 59 1-65 4-63 (203)
100 2x48_A CAG38821; archeal virus 53.4 2.5 8.4E-05 26.6 -0.3 42 7-58 10-53 (55)
101 1u78_A TC3 transposase, transp 53.1 6.4 0.00022 28.3 1.9 47 9-62 59-105 (141)
102 1or7_A Sigma-24, RNA polymeras 50.7 6.1 0.00021 29.8 1.5 44 11-64 141-184 (194)
103 3c57_A Two component transcrip 50.2 7.5 0.00026 27.6 1.9 38 10-58 27-64 (95)
104 1ku3_A Sigma factor SIGA; heli 49.1 6.8 0.00023 26.1 1.4 39 10-58 10-52 (73)
105 2qwt_A Transcriptional regulat 47.7 1.6 5.6E-05 32.8 -2.1 58 1-65 1-61 (196)
106 1x3u_A Transcriptional regulat 46.8 3.6 0.00012 27.3 -0.3 44 11-65 17-60 (79)
107 2jn6_A Protein CGL2762, transp 46.5 7.9 0.00027 27.0 1.5 42 8-59 3-46 (97)
108 2rnj_A Response regulator prot 46.0 3.4 0.00012 28.9 -0.5 45 10-65 29-73 (91)
109 2v57_A TETR family transcripti 45.3 5.4 0.00018 29.1 0.5 40 18-65 22-61 (190)
110 2p7v_B Sigma-70, RNA polymeras 44.9 6.8 0.00023 25.7 0.9 39 10-58 5-47 (68)
111 1c07_A Protein (epidermal grow 43.4 7.7 0.00026 27.0 1.0 42 9-54 2-47 (95)
112 1eh2_A EPS15; calcium binding, 43.2 15 0.00052 26.7 2.6 44 7-54 5-51 (106)
113 1u78_A TC3 transposase, transp 42.4 12 0.00039 26.9 1.9 41 9-59 5-45 (141)
114 3on2_A Probable transcriptiona 42.2 11 0.00036 27.4 1.6 45 16-66 18-62 (199)
115 2np3_A Putative TETR-family re 42.1 6.6 0.00022 29.5 0.5 45 16-66 36-80 (212)
116 2jpc_A SSRB; DNA binding prote 40.8 5.4 0.00018 25.3 -0.1 41 14-65 2-42 (61)
117 2hxo_A Putative TETR-family tr 40.7 18 0.00061 28.9 2.9 55 4-64 9-64 (237)
118 3gzi_A Transcriptional regulat 40.4 12 0.00041 27.8 1.7 46 17-68 24-69 (218)
119 2rn7_A IS629 ORFA; helix, all 38.8 14 0.00047 26.2 1.7 46 8-57 4-51 (108)
120 3lsj_A DEST; transcriptional r 38.1 3.2 0.00011 31.2 -1.8 46 16-67 17-63 (220)
121 2qib_A TETR-family transcripti 37.2 5.6 0.00019 30.7 -0.6 44 16-65 19-62 (231)
122 3lwj_A Putative TETR-family tr 37.0 3 0.0001 30.8 -2.1 60 1-66 2-62 (202)
123 1tty_A Sigma-A, RNA polymerase 36.7 10 0.00036 26.2 0.8 39 10-58 18-60 (87)
124 3knw_A Putative transcriptiona 36.6 4 0.00014 30.2 -1.4 59 1-65 4-63 (212)
125 3rjo_A Endoplasmic reticulum a 36.3 29 0.001 30.4 3.8 22 9-31 353-374 (419)
126 2q24_A Putative TETR family tr 35.3 7.9 0.00027 28.6 -0.0 43 16-65 21-63 (194)
127 2hyt_A TETR-family transcripti 33.7 2.7 9.2E-05 31.5 -2.9 44 16-65 18-61 (197)
128 3clo_A Transcriptional regulat 33.5 12 0.00042 30.5 0.9 48 9-67 196-243 (258)
129 1pdn_C Protein (PRD paired); p 33.1 20 0.00067 24.9 1.8 47 9-59 74-126 (128)
130 2lhi_A Calmodulin, serine/thre 32.7 14 0.00049 28.1 1.1 36 8-43 2-41 (176)
131 1k78_A Paired box protein PAX5 32.6 39 0.0013 24.9 3.4 50 8-61 88-143 (149)
132 2rae_A Transcriptional regulat 32.6 9.8 0.00033 28.1 0.1 44 16-65 23-66 (207)
133 2eqr_A N-COR1, N-COR, nuclear 32.5 31 0.0011 23.0 2.7 51 3-61 7-58 (61)
134 3qqa_A CMER; alpha-helical, he 32.5 28 0.00094 25.6 2.6 44 16-65 25-68 (216)
135 3ulq_B Transcriptional regulat 32.3 16 0.00054 26.0 1.2 39 8-57 27-65 (90)
136 3i5g_C Myosin catalytic light 32.3 19 0.00065 27.0 1.7 45 10-56 2-52 (159)
137 2q0o_A Probable transcriptiona 32.1 19 0.00066 28.8 1.8 47 7-64 172-218 (236)
138 2iu5_A DHAS, YCEG, HTH-type dh 31.9 19 0.00063 26.7 1.6 45 16-66 19-63 (195)
139 3fia_A Intersectin-1; EH 1 dom 31.4 23 0.00078 27.3 2.0 47 6-56 22-72 (121)
140 3fwb_A Cell division control p 30.8 33 0.0011 24.0 2.7 51 5-57 11-65 (161)
141 3j04_B Myosin regulatory light 30.6 49 0.0017 22.8 3.5 47 11-59 1-51 (143)
142 2ibd_A Possible transcriptiona 30.3 9.3 0.00032 28.6 -0.4 43 17-65 21-63 (204)
143 1j7q_A CAVP, calcium vector pr 30.2 31 0.0011 22.4 2.3 37 7-43 4-44 (86)
144 3f0c_A TETR-molecule A, transc 30.0 9.5 0.00033 28.3 -0.3 60 1-66 1-61 (216)
145 2jrt_A Uncharacterized protein 28.7 19 0.00065 26.6 1.1 45 2-57 26-70 (95)
146 2rek_A Putative TETR-family tr 28.3 11 0.00037 27.9 -0.3 44 16-66 22-65 (199)
147 2mys_C Myosin; muscle protein, 28.0 39 0.0013 23.3 2.6 46 10-57 1-50 (149)
148 1iq3_A Ralbp1-interacting prot 27.8 10 0.00036 27.6 -0.5 50 4-57 9-62 (110)
149 3iz6_M 40S ribosomal protein S 27.4 45 0.0016 26.9 3.2 30 29-61 58-87 (152)
150 3b81_A Transcriptional regulat 27.3 5.2 0.00018 29.3 -2.2 45 16-66 17-61 (203)
151 3him_A Probable transcriptiona 26.9 26 0.0009 25.4 1.6 44 16-65 22-65 (211)
152 2kgr_A Intersectin-1; structur 26.7 30 0.001 24.8 1.9 45 6-54 3-51 (111)
153 2k27_A Paired box protein PAX- 26.6 28 0.00095 26.1 1.7 47 8-58 81-133 (159)
154 4aci_A HTH-type transcriptiona 26.4 5.5 0.00019 29.1 -2.2 58 3-66 6-64 (191)
155 2qko_A Possible transcriptiona 25.7 27 0.00092 26.1 1.5 44 16-65 34-77 (215)
156 1zk8_A Transcriptional regulat 25.0 15 0.00052 26.6 -0.0 50 11-66 8-58 (183)
157 3nrg_A TETR family transcripti 24.9 34 0.0012 25.2 1.9 44 16-65 19-62 (217)
158 3kz9_A SMCR; transcriptional r 24.8 35 0.0012 24.6 2.0 44 16-65 23-66 (206)
159 2opo_A Polcalcin CHE A 3; calc 24.4 25 0.00085 22.8 1.0 42 10-54 4-49 (86)
160 2joj_A Centrin protein; N-term 24.1 20 0.00068 22.6 0.4 33 11-43 1-37 (77)
161 3g1o_A Transcriptional regulat 23.8 15 0.0005 28.7 -0.3 47 16-68 49-95 (255)
162 2hxi_A Putative transcriptiona 23.7 24 0.00081 28.3 0.9 56 4-65 22-78 (241)
163 1l3l_A Transcriptional activat 23.4 38 0.0013 27.0 2.1 46 7-63 170-215 (234)
164 2k27_A Paired box protein PAX- 23.4 38 0.0013 25.3 2.0 41 9-59 24-64 (159)
165 1wdc_B Scallop myosin; calcium 23.3 61 0.0021 22.9 3.0 49 9-59 10-62 (156)
166 4dox_A Coat protein; all helix 23.1 33 0.0011 29.6 1.7 52 1-54 6-57 (226)
167 3q0w_A HTH-type transcriptiona 22.8 11 0.00037 29.1 -1.3 45 16-66 50-94 (236)
168 3he0_A Transcriptional regulat 22.5 19 0.00065 26.1 0.1 47 14-66 15-61 (196)
169 1sgm_A Putative HTH-type trans 22.5 25 0.00086 25.2 0.8 46 14-65 10-56 (191)
170 2zb9_A Putative transcriptiona 22.4 14 0.00049 27.6 -0.6 44 16-65 29-72 (214)
171 3dcf_A Transcriptional regulat 22.2 22 0.00074 26.1 0.4 44 16-65 37-80 (218)
172 3ppb_A Putative TETR family tr 22.1 22 0.00076 25.5 0.4 45 15-65 14-58 (195)
173 2fu4_A Ferric uptake regulatio 21.9 54 0.0018 21.9 2.3 41 9-53 13-55 (83)
174 2ktg_A Calmodulin, putative; e 21.9 44 0.0015 21.4 1.8 37 7-43 4-44 (85)
175 1avs_A Troponin C; muscle cont 21.9 47 0.0016 21.8 2.0 34 10-43 13-50 (90)
176 4ffb_C Protein STU2; tubulin f 21.7 57 0.002 26.3 2.8 16 11-26 229-244 (278)
177 2cjj_A Radialis; plant develop 21.3 68 0.0023 23.6 2.9 50 1-54 1-50 (93)
178 3qbm_A TETR transcriptional re 21.2 19 0.00066 26.0 -0.1 45 16-66 13-57 (199)
179 2wui_A MEXZ, transcriptional r 20.8 22 0.00074 26.7 0.1 43 16-64 17-59 (210)
180 2lfw_A PHYR sigma-like domain; 20.5 8.1 0.00028 29.1 -2.3 39 10-58 93-131 (157)
181 2dg8_A Putative TETR-family tr 20.4 17 0.00058 26.8 -0.6 48 14-67 13-60 (193)
182 3qkx_A Uncharacterized HTH-typ 20.3 25 0.00085 25.2 0.3 45 16-66 14-58 (188)
183 2dg7_A Putative transcriptiona 20.2 22 0.00075 26.1 0.0 44 15-64 12-55 (195)
184 2xdn_A HTH-type transcriptiona 20.2 29 0.00098 25.8 0.7 44 16-65 17-60 (210)
185 3u0k_A Rcamp; fluorescent prot 20.2 43 0.0015 31.4 2.0 46 7-54 292-341 (440)
186 3gty_X Trigger factor, TF; cha 20.1 46 0.0016 30.1 2.1 43 18-60 339-381 (433)
187 2ovk_B RLC, myosin regulatory 20.0 1.1E+02 0.0039 21.3 3.8 38 5-42 4-45 (153)
188 3kkc_A TETR family transcripti 20.0 26 0.0009 25.0 0.4 45 16-66 18-62 (177)
No 1
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=1.5e-21 Score=140.94 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRRK 71 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~~ 71 (208)
+..+|.|+.||++|+.+||.+|..++ ||+..+|.+||..|+ |++.+|+|||||||||+|++.+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTH-YPDVFARERLAAKID----LPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhhHHHHHHHHHHHHHhhhh
Confidence 45789999999999999999999996 999999999999996 999999999999999999887655
No 2
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=1.3e-21 Score=137.59 Aligned_cols=63 Identities=24% Similarity=0.372 Sum_probs=59.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRR 70 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~ 70 (208)
+++|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|+|||||||||+|+...+
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 1 GPRRTRTTFTSSQIAELEQHFLQGR-YLTAPRLADLSAKLA----LGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CCSCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----cCHHHhhHhhHHHHHHHHHHhcc
Confidence 4789999999999999999999995 999999999999997 99999999999999999987654
No 3
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=1.1e-21 Score=133.01 Aligned_cols=57 Identities=26% Similarity=0.395 Sum_probs=54.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 5 GSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 5 ~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
+|+|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++++|++||||||||+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQ-YLSIAERAEFSSSLS----LTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHHC----cCHHHhhhhhhHhhhhhcc
Confidence 58999999999999999999995 999999999999996 9999999999999999986
No 4
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-21 Score=140.28 Aligned_cols=64 Identities=22% Similarity=0.388 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRR 70 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~ 70 (208)
+..+|.|+.||++|+.+||..|..++ ||+..+|.+||.+|+ |++.+|+|||||||+|+|++..+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINH-NPDAKDLKQLAQKTG----LTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----CCHHHhhHccHHHHHHHHHHHHH
Confidence 45789999999999999999999995 999999999999996 99999999999999999987654
No 5
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-21 Score=137.33 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
+..+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETK-YPDVGTREQLARKVH----LREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----CCHHHeehccccccccccccC
Confidence 45789999999999999999999995 999999999999997 999999999999999999864
No 6
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.83 E-value=1.2e-21 Score=134.67 Aligned_cols=59 Identities=19% Similarity=0.350 Sum_probs=52.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
..+|+|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNENR-YLTERRRQQLSSELG----LNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----cCHHHHHHHhhhhcccccc
Confidence 3579999999999999999999995 999999999999997 9999999999999999986
No 7
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=1.2e-21 Score=141.16 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLR 69 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r 69 (208)
+..+|.|+.||++|+.+||.+|..++ ||+..+|.+||..|+ |++++|+|||||||||+|++.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTR-YPDIFMREEVALKIN----LPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----cCHHHhhhhhHHHhHHhhHHHH
Confidence 46789999999999999999999995 999999999999996 9999999999999999997654
No 8
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.83 E-value=3.8e-21 Score=138.00 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRRK 71 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~~ 71 (208)
...+|.|+.||.+|+.+||..|..++ ||+..+|.+||..|+ |++.+|+|||||||||+|+..+..
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNM-YLTRDRRYEVARLLN----LTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHhhhhc
Confidence 35689999999999999999999995 999999999999997 999999999999999999887653
No 9
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.83 E-value=9.5e-22 Score=135.50 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=52.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQK 67 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk 67 (208)
..+|+|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQK-YLSLQQMQELSSILN----LSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHhhHHhHHhhcchhhc
Confidence 3578999999999999999999995 999999999999997 99999999999999999975
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.82 E-value=3.3e-21 Score=138.32 Aligned_cols=64 Identities=23% Similarity=0.336 Sum_probs=59.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRRK 71 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~~ 71 (208)
..+|.|+.||.+|+.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||||+|+.....
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQR-YLSAPEREHLASLIR----LTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHhhcchhhhhccc
Confidence 4688999999999999999999995 999999999999996 999999999999999999876543
No 11
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.82 E-value=2.6e-21 Score=133.96 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=55.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
..+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++++|++||||||||+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNK-YISRPRRVELAVMLN----LTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----cCHHHhhHHHHhhhhhhhhhc
Confidence 3679999999999999999999995 999999999999997 999999999999999999863
No 12
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=1.8e-21 Score=137.25 Aligned_cols=62 Identities=24% Similarity=0.337 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
+..+|+|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||||+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANK-FITKDKRRKISAATS----LSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----CCHHHhhHhhHhHHHHhcccC
Confidence 35789999999999999999999995 999999999999996 999999999999999999754
No 13
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.82 E-value=2e-21 Score=133.11 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHH
Q 039144 5 GSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQK 67 (208)
Q Consensus 5 ~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk 67 (208)
+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKEN-YVSRPRRCELAAQLN----LPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHC----cCHHHHHHhhHHHHhHhhcc
Confidence 68999999999999999999995 999999999999997 99999999999999999974
No 14
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=4.1e-21 Score=135.38 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
+..+++|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQK-YLSPPERKRLAKMLQ----LSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHC----CCHHHhhHhhHhhHhhcCCCC
Confidence 45788999999999999999999995 999999999999996 999999999999999999865
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=2.2e-21 Score=136.22 Aligned_cols=62 Identities=26% Similarity=0.375 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
+..+|+|+.||++|+.+||..|+.++ ||+..+|.+||..|+ |++.+|++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINN-SPSEEQIKEMADKSG----LPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHHC----CCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHhC----CCHHHHHHHhhhhhHHHhhhc
Confidence 45789999999999999999999995 999999999999996 999999999999999999864
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=2.7e-21 Score=135.76 Aligned_cols=62 Identities=23% Similarity=0.440 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
+..+|+|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANA-YPKDDEFEQLSNLLN----LPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhC----CCHHHhHHhhHhhhHHHhhcc
Confidence 45789999999999999999999995 999999999999996 999999999999999999754
No 17
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.2e-21 Score=136.76 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
+..+|+|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQ-YLALPERAELAASLG----LTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHSS----CCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHhC----CCHHHHHHHHHHHhhhhcccC
Confidence 45789999999999999999999995 999999999999996 999999999999999999754
No 18
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-21 Score=139.63 Aligned_cols=61 Identities=34% Similarity=0.492 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
..+|.|+.||++||.+||.+|..++ ||+.++|.+||.+|+ |++.+|+|||||||||+|++.
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLLDS-NPTRKMLDHIAHEVG----LKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----cCHHHhHHHhHHHHHhHhhhc
Confidence 4688999999999999999999995 999999999999997 999999999999999999854
No 19
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.82 E-value=5.3e-21 Score=136.28 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
...+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNK-FITKDKRRRISATTN----LSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTS-CCCHHHHHHHHHHHT----SCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCC-CcCHHHHHHHHHHHC----CCHHHHHHHHHHHhHHHHHHh
Confidence 45789999999999999999999995 999999999999997 999999999999999999754
No 20
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-21 Score=139.99 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSG----VRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQK 67 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n----~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk 67 (208)
+..+|.|+.||.+|+.+||..|+.+ + ||+.++|.+||.+|+ |++++|+|||||||||+|+.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~-yp~~~~r~~La~~lg----L~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLG-SVCREKIEAVATELN----VDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCS-HHHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCC-CcCHHHHHHHHHHhC----CCHHHhhHhHHHHHHHHhhc
Confidence 4578999999999999999999999 7 999999999999997 99999999999999999974
No 21
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.3e-21 Score=139.15 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
..+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||||+|+..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEKQK-YLSTPDRIDLAESLG----LSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----CCHHHeeeccHHHHHHhhccc
Confidence 4689999999999999999999996 999999999999996 999999999999999999754
No 22
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.81 E-value=7.5e-21 Score=137.30 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=58.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRR 70 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~ 70 (208)
..+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+|++.+.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQ-YPDIYTREELAQRTN----LTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHhhhhhhhccc
Confidence 3688999999999999999999995 999999999999996 99999999999999999987653
No 23
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-21 Score=141.01 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=57.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
..+|.|+.||.+|+.+||.+|..++ ||+..+|.+||..|+ |++++|+|||||||||+|+..
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQRQK-YLSLQQMQELSNILN----LSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999995 999999999999996 999999999999999999864
No 24
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.81 E-value=3e-21 Score=132.27 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHH
Q 039144 6 STRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLR 69 (208)
Q Consensus 6 R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r 69 (208)
.+|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++++|++||||||||+|+..+
T Consensus 1 g~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 1 GSHMTFTSFQLEELEKAFSRTH-YPDVFTREELAMKIG----LTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ----CCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHC----
T ss_pred CCCcccCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHC----cCHHHHHHHhhhhhhhhHhhcc
Confidence 3699999999999999999995 999999999999996 9999999999999999998653
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.81 E-value=4.6e-21 Score=134.93 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHH
Q 039144 4 AGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLR 69 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r 69 (208)
.+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||||+|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNR-YLTRRRRIEIAHALS----LTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCC-CCCHHHHHHHHHHHC----cCHhhhhHHhHHHHhHHhHhcc
Confidence 478999999999999999999995 999999999999997 9999999999999999998754
No 26
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-21 Score=135.18 Aligned_cols=61 Identities=25% Similarity=0.476 Sum_probs=57.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHH
Q 039144 4 AGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLR 69 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r 69 (208)
.+|+|+.||++|+.+||..|..++ ||+.++|.+||..|+ |++.+|++||||||+|+|++.+
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNC-YPGIDILEDLAQKLN----LELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----cCHHHhhHhhHhHHHHHhHhch
Confidence 478999999999999999999995 999999999999997 9999999999999999998654
No 27
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.81 E-value=4.3e-21 Score=133.64 Aligned_cols=60 Identities=18% Similarity=0.375 Sum_probs=56.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 4 AGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
.+|+|+.||++|+.+||..|+.++ ||+..+|.+||..|+ |++.+|++||||||||+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANP-RPDALMKEQLVEMTG----LSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHHC----cCHHHHHHHhHHHHHHHhHHh
Confidence 689999999999999999999995 999999999999997 999999999999999998753
No 28
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.1e-20 Score=140.45 Aligned_cols=68 Identities=16% Similarity=0.394 Sum_probs=61.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhh-----------ccCCCCCCceeeccccchhhHHHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLS-----------HFGKIEGKNVFYWFQNHKARERQKLRR 70 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~-----------~~g~LsE~qVqvWFQNRRAReKRk~r~ 70 (208)
+..+|.|+.||++||.+||..|+.++ ||+..+|++||+.|+ .++.|++.+|+|||||||+|+|++.+.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~-yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQ-YPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999995 999999999999997 555699999999999999999987654
No 29
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.81 E-value=5.1e-21 Score=142.59 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=59.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRRKL 72 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~~~ 72 (208)
..+|+|+.||.+|+.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||+|+|++..+..
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQK-YLASAERAALARGLK----MTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHTTT----CCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhC----CChhhcccccHhhhhhhhhhhHHHH
Confidence 4678999999999999999999995 999999999999996 9999999999999999998776543
No 30
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=3.8e-21 Score=140.54 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
.+.+|.||.||.+|+.+||..|+. ++ ||+..+|.+||..|+ |++++|+|||||||||.|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~-yp~~~~r~~La~~lg----L~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQ-RQDDEVIQRFCQETG----VPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCC-TTTHHHHHHHHHHSC----CCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCC-CcCHHHHHHHHHHhC----CCcccccCCccccCcCCCC
Confidence 457899999999999999999999 85 999999999999996 9999999999999999874
No 31
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.81 E-value=5.3e-21 Score=134.37 Aligned_cols=62 Identities=19% Similarity=0.351 Sum_probs=57.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHH
Q 039144 4 AGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRR 70 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~ 70 (208)
.+|+|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQK-YLSAPEREHLASMIH----LTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHhHHHhHHHhhhhhhhhhH
Confidence 478999999999999999999996 999999999999997 99999999999999999987643
No 32
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.81 E-value=3e-21 Score=135.36 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=58.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRR 70 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~ 70 (208)
..+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+|++.+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNR-YPDMSTREEIAVWTN----LTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCS-SCCTTTTTHHHHHTT----SCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHhHHHHHHhhc
Confidence 4689999999999999999999995 999999999999997 99999999999999999987653
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.81 E-value=1e-20 Score=127.14 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=54.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 4 AGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
.+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQR-YLSAPERDQLASVLK----LTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----cCHHHHHHhhHHhhccCC
Confidence 578999999999999999999995 999999999999997 999999999999999986
No 34
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.81 E-value=1.1e-20 Score=134.37 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=56.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHH
Q 039144 4 AGSTRWCPTPEQLMILEEMYRS-GVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLR 69 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F~~-n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r 69 (208)
.++.|+.||++|+.+||..|.. ++ ||+..+|.+||..|+ |++++|++||||||||+|++.+
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~~~----l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEAG----LTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHhcc
Confidence 4688999999999999999994 85 999999999999997 9999999999999999998653
No 35
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=8.3e-21 Score=141.66 Aligned_cols=63 Identities=24% Similarity=0.338 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRR 70 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~ 70 (208)
..+|.|+.||.+||.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||||+|++.+.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNK-YLSRARRVEIAATLE----LNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhHHHHHHHhHHHhHHhcc
Confidence 4678999999999999999999995 999999999999997 99999999999999999987653
No 36
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.80 E-value=6.2e-21 Score=138.52 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=53.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLR 69 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r 69 (208)
..+|.|+.||.+|+.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||+|+|+..+
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNH-YLTRRRRIEMAHALS----LTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHhhhhhhhhcc
Confidence 3578999999999999999999996 999999999999997 9999999999999999998643
No 37
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.80 E-value=5.8e-21 Score=140.06 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
..+|.|+.||.+|+.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||||+|++.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNR-YLTRRRRIEIAHALS----LTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----cCHHHhhHHhHHHHHHhHhhc
Confidence 3689999999999999999999995 999999999999996 999999999999999999753
No 38
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=1e-20 Score=134.10 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 1 MSPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 1 ~sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
|..+++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++++|++||||||+|+|+..
T Consensus 3 ~~~~~~~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 3 MPDSFGIRAKKTKEQLAELKVSYLKNQ-FPHDSEIIRLMKITG----LTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCCCTTCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----cCHHHeeeCChhHhHHHHhhC
Confidence 567889999999999999999999995 999999999999996 999999999999999999764
No 39
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=2e-20 Score=132.42 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 5 GSTRWCPTPEQLMILEEMYRS-GVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 5 ~R~Rt~FT~eQLqiLE~~F~~-n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
.+.|+.||++|+.+||..|.. ++ ||+..+|.+||..|+ |++++|++||||||||+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEAG----LTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCC-CCCHHHHHHHHHHHC----cCHHHhhHHhHHHHHHHhhhc
Confidence 478999999999999999996 85 999999999999997 999999999999999999865
No 40
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=7.5e-21 Score=134.21 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=57.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLR 69 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r 69 (208)
..+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|+|||||||+|+|++.+
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQKTH-YPDVYAREQLAMRTD----LTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHHHHHHHHHHh
Confidence 4688999999999999999999996 999999999999996 9999999999999999998654
No 41
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.79 E-value=1.3e-20 Score=128.86 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=47.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
..+|.|+.||++|+.+||..|..++ ||+.+++.+||..|+ |++.+|++||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQ-SLNSKEKEEVAKKCG----ITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhccC
Confidence 4689999999999999999999995 999999999999997 999999999999999976
No 42
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.79 E-value=2.1e-20 Score=126.97 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHH
Q 039144 9 WCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQK 67 (208)
Q Consensus 9 t~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk 67 (208)
|.||++|+.+||..|..++ ||+..+|.+||..|+ |++++|++||||||||+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQK-YLASAERAALAKALR----MTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcC-CcCHHHHHHHHHHhC----cCHHHhhHhhHHhhhhhccc
Confidence 5799999999999999995 999999999999997 99999999999999999985
No 43
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.5e-20 Score=141.95 Aligned_cols=68 Identities=19% Similarity=0.384 Sum_probs=61.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc-------------cC----CCCCCceeeccccchhhHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSH-------------FG----KIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~-------------~g----~LsE~qVqvWFQNRRAReK 65 (208)
..+|.|+.||++|+.+||..|+.++ ||+.++|++||+.|+. || .|+|.+|+|||||||+|+|
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~-yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 4689999999999999999999996 9999999999999942 34 7999999999999999999
Q ss_pred HHHHHH
Q 039144 66 QKLRRK 71 (208)
Q Consensus 66 Rk~r~~ 71 (208)
++.+..
T Consensus 84 r~~~~~ 89 (102)
T 2da6_A 84 FRQKLA 89 (102)
T ss_dssp HHHHHH
T ss_pred HhhHhh
Confidence 876654
No 44
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.2e-20 Score=133.03 Aligned_cols=62 Identities=15% Similarity=0.312 Sum_probs=57.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHH
Q 039144 4 AGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRR 70 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~ 70 (208)
.+++|..||++||.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||||+|++.+.
T Consensus 7 ~~~kr~~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 7 GPTKYKERAPEQLRALESSFAQNP-LPLDEELDRLRSETK----MTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCCCccCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhhHhhHHHHHHHHHhhhc
Confidence 467889999999999999999995 999999999999996 99999999999999999986543
No 45
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-20 Score=133.68 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLR 69 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r 69 (208)
+.+.+.|+.||++||.+||..|..++ ||+..+|.+||..|+ |++++|++||||||+|+|++.+
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCRNQ-FPGQSEVEHLTKVTG----LSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHSS-SCCSHHHHHHHHHHC----CCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----CChHHhhHHhHHHhHHHHHhcc
Confidence 45778899999999999999999995 999999999999996 9999999999999999998543
No 46
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.78 E-value=2.3e-20 Score=137.00 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=54.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRS-----GVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~-----n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
..+|.||.||.+||.+|| .|.. ++ ||+..+|.+||.+|+ |++++|+|||||||||.|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~-yp~~~~r~~La~~lg----L~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQ-KHDDVAVEQFCAETG----VRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCC-SSTTHHHHHHHHHSC----CCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCC-CCCHHHHHHHHHHhC----cCcCcccccccccccCCCC
Confidence 468999999999999999 7999 85 999999999999996 9999999999999999874
No 47
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=2.7e-20 Score=128.62 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMY---RSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F---~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
|..++.|+.||++|+.+||..| ..++ ||+.+++.+||..|+ |++.+|++||||||+|+|+
T Consensus 1 s~~rr~R~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 1 SSGHIEGRHMNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCCSSTTTHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhcc
Confidence 5778999999999999999999 7885 999999999999997 9999999999999999986
No 48
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.77 E-value=5e-20 Score=130.46 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=57.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHH
Q 039144 4 AGSTRWCPTPEQLMILEEMY---RSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRR 70 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F---~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~ 70 (208)
++|.|+.||++|+.+||..| ..++ ||+.++|.+||..|+ |++.+|++||||||+|.|++...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhhccccccc
Confidence 57999999999999999999 7885 999999999999996 99999999999999999976544
No 49
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.2e-19 Score=133.66 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=55.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHH
Q 039144 4 AGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQK 67 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk 67 (208)
..+.|..||++||.+||+.|..++ ||+.++|.+||..|+ |++++|+|||||||+|.|+.
T Consensus 3 ~g~~r~kfT~~Ql~~Le~~F~~~~-YPs~~er~~LA~~tg----Lte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 3 SGSSGKRKTKEQLAILKSFFLQCQ-WARREDYQKLEQITG----LPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHC----cCHHHhhHHhHhhHHHHHHH
Confidence 467899999999999999999995 999999999999996 99999999999999999864
No 50
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.76 E-value=1.3e-19 Score=131.80 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=56.0
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHH
Q 039144 4 AGSTRWCPTPEQLMILEEMY---RSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRR 70 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F---~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~ 70 (208)
++|.|+.||.+|+.+||..| ..++ ||+.++|.+||..|+ |++.+|++||||||+|+|++...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSC-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhhhcccc
Confidence 47899999999999999999 7885 999999999999996 99999999999999999986544
No 51
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.76 E-value=2e-19 Score=122.94 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=52.2
Q ss_pred CCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 7 TRWCPTPEQLMILEEMYRS---GVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 7 ~Rt~FT~eQLqiLE~~F~~---n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
+|+.||++|+.+||..|.. ++ ||+.++|.+||.+++ |++.+|++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~g----l~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNTS----LSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHccccc
Confidence 4889999999999999999 85 999999999999996 9999999999999999986
No 52
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=3.4e-19 Score=126.15 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRS---GVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~---n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
+..++.|+.||++|+.+||..|.. + +||+.++|.+||..|+ |++.+|+|||||||+|.|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGH-PYPTEDEKKQIAAQTN----LTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHC----cCHHHHHHHhHHHHhhccccc
Confidence 356899999999999999999987 7 5999999999999996 999999999999999999764
No 53
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.75 E-value=9.6e-20 Score=138.85 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=54.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcc--------------CC---CCCCceeeccccchhhHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHF--------------GK---IEGKNVFYWFQNHKARER 65 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~--------------g~---LsE~qVqvWFQNRRAReK 65 (208)
..+|.|+.||++||.+||..|+.++ ||+..+|.+||+.++.. +| |++.+|+|||||||||+|
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~~~-yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 3578999999999999999999995 99999999999995432 45 999999999999999998
Q ss_pred HHHHH
Q 039144 66 QKLRR 70 (208)
Q Consensus 66 Rk~r~ 70 (208)
++...
T Consensus 87 ~k~~~ 91 (99)
T 1lfb_A 87 FRHKL 91 (99)
T ss_dssp CCC--
T ss_pred Hhchh
Confidence 77644
No 54
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.75 E-value=3e-19 Score=133.20 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=55.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 4 AGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
.+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++++|++||||||+|+|+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVRTQ-WPSPEEYDKLAKESG----LARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----CCHHHeeecchhhhhHhhhhc
Confidence 568999999999999999999995 999999999999996 999999999999999999864
No 55
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.74 E-value=5.3e-19 Score=129.33 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRS---GVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~---n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
+..+++|+.||.+|+.+||..|.. ++ ||+.++|.+||..|+ |++++|++||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~g----L~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNTS----LSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhhcc
Confidence 346788999999999999999999 85 999999999999996 999999999999999987
No 56
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.1e-19 Score=125.14 Aligned_cols=57 Identities=23% Similarity=0.391 Sum_probs=53.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 5 GSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 5 ~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
...+..++++|+.+||..|..++ ||+..+|.+||.+|+ |++++|+|||||||||+++
T Consensus 4 g~~~~~p~~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 4 GSSGQPPLKNLLSLLKAYYALNA-QPSAEELSKIADSVN----LPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCSCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCSC
T ss_pred CCCCCCccHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----cChhhcCcchhcccCCCCC
Confidence 45678899999999999999995 999999999999997 9999999999999999875
No 57
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.74 E-value=3.3e-19 Score=142.42 Aligned_cols=60 Identities=22% Similarity=0.338 Sum_probs=54.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQK 67 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk 67 (208)
..+|+|+.||.+|+.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||||+||+
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHS-KPSSQEIMRMAEELN----LEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----CChhhchhhhHhhhhhhhcc
Confidence 4688999999999999999999995 999999999999996 99999999999999999975
No 58
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.73 E-value=6.4e-19 Score=142.14 Aligned_cols=60 Identities=20% Similarity=0.371 Sum_probs=54.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQK 67 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk 67 (208)
..+|.|+.||.+|+.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||||+||+
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQ-KPTSEDITLIAEQLN----MEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHC----CChHHhhHhhHHhhhhhhcc
Confidence 4688999999999999999999995 999999999999997 99999999999999999974
No 59
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.73 E-value=1e-18 Score=139.32 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
..+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+|+ |++++|+|||||||+|+||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNP-LPTGQEITEMAKELN----YDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----CCHHHhHHHHHHHHhccCC
Confidence 4688999999999999999999995 999999999999997 9999999999999999986
No 60
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-18 Score=129.32 Aligned_cols=60 Identities=13% Similarity=0.262 Sum_probs=53.9
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHH
Q 039144 6 STRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRR 70 (208)
Q Consensus 6 R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~ 70 (208)
+++..||++||.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||||+|++.+.
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~~----l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSS-FPTQAELDRLRVETK----LSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTSCSC
T ss_pred cccccCCHHHHHHHHHHHccCC-CCCHHHHHHHHHHhC----CCHHhccHhhHhHHHHHHHHhHh
Confidence 4555699999999999999995 999999999999997 99999999999999999876543
No 61
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.72 E-value=2e-18 Score=126.26 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSG--VRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLR 69 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n--~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r 69 (208)
+..+++|+.||.+|+.+||..|..+ .+||+.++|.+||..++ |++.+|+|||||||+|.|+...
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~g----Ls~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTN----LSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC----cCHHHhhHHhhhhHhhhcHHHH
Confidence 4578999999999999999999873 24999999999999996 9999999999999999987543
No 62
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=3.6e-19 Score=127.75 Aligned_cols=59 Identities=12% Similarity=0.289 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHH
Q 039144 4 AGSTRWCPTPEQLMILEEMY-RSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQK 67 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F-~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk 67 (208)
-.+.|..++.+|+.+||..| ..+. ||+..+|.+||.+|+ |++++|+|||||||||+|+.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~-yp~~~~r~~LA~~l~----l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTK-YPDEKRLKGLSKQLD----WSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----CChhhcchhhhhcccCCCCC
Confidence 35778889999999999999 9995 999999999999997 99999999999999999863
No 63
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.72 E-value=1.7e-18 Score=126.19 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 5 GSTRWCPTPEQLMILEEMYRS---GVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 5 ~R~Rt~FT~eQLqiLE~~F~~---n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
++.|+.||.+|+.+||..|.. ++ ||+.++|.+||..|+ |++.+|++||||||+|.|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~-yP~~~~r~~La~~~g----Lt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNTS----LSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHHHC----CCHHHcccccHHHHccccccc
Confidence 456777999999999999999 85 999999999999996 999999999999999999754
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.71 E-value=1.3e-18 Score=141.74 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=51.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRR 70 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~ 70 (208)
..+|+|+.||.+|+.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||+|+||..+.
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCP-KPSAHEITGLADSLQ----LEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cCCCCceeccHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHC----CChhhhhhhhHHhhHHHhhccCC
Confidence 4678999999999999999999995 999999999999997 99999999999999999986543
No 65
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.2e-18 Score=129.66 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHH
Q 039144 7 TRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLR 69 (208)
Q Consensus 7 ~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r 69 (208)
+.-.||.+||.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||||+|++.+
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~lg----Lte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSS-VLTDEELNRLRAQTK----LTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHSCCS
T ss_pred hhccCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----cChHHCeecccccchHHHHHHH
Confidence 444999999999999999996 999999999999996 9999999999999999987553
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.1e-18 Score=126.86 Aligned_cols=59 Identities=24% Similarity=0.405 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRS-GVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~-n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
|.++|+||.||.+||.+|+..|+. +. ||+.+.|++||++|+ |++++|+|||||||.-.|
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~-yPd~~~r~~La~~tG----L~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGL-YPDQEAIHTLSAQLD----LPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHSC----CCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CCHHHHHHhhccceeeec
Confidence 468999999999999999999999 95 999999999999996 999999999999997544
No 67
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.70 E-value=2.2e-18 Score=138.28 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=54.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLR 69 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r 69 (208)
..+|.|+.||++|+.+||..|+.++ ||+.++|.+||..|+ |++++|+|||||||+|.|+...
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~la~~l~----L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENK-RPSKELQITISQQLG----LELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHC----cCHHHhhhcChhhhccccccCC
Confidence 3689999999999999999999995 999999999999997 9999999999999999997543
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.69 E-value=3.9e-18 Score=137.15 Aligned_cols=60 Identities=25% Similarity=0.395 Sum_probs=56.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQK 67 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk 67 (208)
..+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yps~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSP-KPSLQQITHIANQLG----LEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCC-CCCHHHHHHHHHHcC----CChhheeeccccccccccCC
Confidence 5788999999999999999999995 999999999999996 99999999999999999974
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-18 Score=123.59 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHH
Q 039144 10 CPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLR 69 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r 69 (208)
..|++|+.+||..|..++ ||+..+|.+||..|+ |++++|+|||||||||+|++..
T Consensus 10 ~~t~~ql~~LE~~F~~~~-yp~~~~r~~LA~~l~----Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQK-YLSAPERAHLAKNLK----LTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CChhheeecchhhhhhhhhhhh
Confidence 479999999999999996 999999999999996 9999999999999999998654
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.68 E-value=7.7e-18 Score=121.88 Aligned_cols=52 Identities=17% Similarity=0.379 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHH
Q 039144 11 PTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQK 67 (208)
Q Consensus 11 FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk 67 (208)
-|.+||.+||..|..++ ||+..+|.+||..|+ |++++|++||||||+|+|+-
T Consensus 11 ~~~~Ql~~LE~~F~~~~-YPs~~er~eLA~~tg----Lt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQ-FPDDAEVYRLIEVTG----LARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGG-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----cCHHHhhHhcccchhhhhcc
Confidence 48999999999999995 999999999999996 99999999999999999964
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=9.7e-18 Score=119.95 Aligned_cols=50 Identities=18% Similarity=0.514 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 12 TPEQLMILEEMY-RSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 12 T~eQLqiLE~~F-~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
.++|+.+||..| ..+ .||+..+|.+||.+|+ |++++|+|||||||+|+|+
T Consensus 8 ~~~~~~~LE~~F~~~~-~yp~~~~r~~LA~~l~----LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 8 TAQPNAILEKVFTAIT-KHPDEKRLEGLSKQLD----WDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SSCHHHHHHHHHHTTC-SSCCHHHHHHHHHHHC----SCHHHHHHHHHHHHHHSCC
T ss_pred CchHHHHHHHHHHHcC-CCcCHHHHHHHHHHhC----CCHHHHHHHHHHHHhccCC
Confidence 356899999999 457 5999999999999997 9999999999999999985
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=5.9e-17 Score=114.42 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHHHH
Q 039144 10 CPTPEQLMILEEMYR---SGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRRKL 72 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~---~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~~~ 72 (208)
.||++|+.+||..|. .++ ||+.++|.+||..++ |++.+|++||||||+|.|+...+..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~p-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHP-YPSEEQKKQLAQDTG----LTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHhC----cCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 699999999999999 885 999999999999996 9999999999999999998765543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.57 E-value=2.1e-16 Score=132.97 Aligned_cols=64 Identities=19% Similarity=0.355 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhc-------------cCC----CCCCceeeccccchhhHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSH-------------FGK----IEGKNVFYWFQNHKARER 65 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~-------------~g~----LsE~qVqvWFQNRRAReK 65 (208)
..+|.|+.||+.|+.+||..|+.++ ||+..+|.+||+.|+. ||- |++.+|+|||||||+|+|
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~~-yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHC-CCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred cCCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 3589999999999999999999995 9999999999999972 233 899999999999999988
Q ss_pred HH
Q 039144 66 QK 67 (208)
Q Consensus 66 Rk 67 (208)
.+
T Consensus 193 ~~ 194 (194)
T 1ic8_A 193 FR 194 (194)
T ss_dssp --
T ss_pred cC
Confidence 53
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.5e-15 Score=108.63 Aligned_cols=49 Identities=20% Similarity=0.497 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhH
Q 039144 11 PTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARE 64 (208)
Q Consensus 11 FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRARe 64 (208)
+=++|+.+||.+|..++ +|+.++|.+||+.|+ |+.++|+|||||||++.
T Consensus 12 ~~k~ql~~Lk~yF~~n~-~Ps~eei~~LA~~lg----L~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 12 PYKDHMSVLKAYYAMNM-EPNSDELLKISIAVG----LPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp SSTHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHHHHHHhhccccc
Confidence 34799999999999996 999999999999997 99999999999999843
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.48 E-value=7.5e-15 Score=126.56 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=54.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcc-----------------CCCCCCceeeccccchhhHH
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHF-----------------GKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~-----------------g~LsE~qVqvWFQNRRAReK 65 (208)
..+|.|+.|+++|+.+||..|+.++ ||+..+|.+||+.++.. ..|++.+|+|||||||+++.
T Consensus 141 k~RR~R~~ft~~ql~~Le~~F~~~~-YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~~ 219 (221)
T 2h8r_A 141 KMRRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 219 (221)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhhh
Confidence 4689999999999999999999995 99999999999998731 24899999999999999864
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.41 E-value=2.3e-14 Score=123.00 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=51.5
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 6 STRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 6 R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
+.|..++.+|+.+||+.|+.++ ||+..+|.+||.+|+ |+++||+|||||||+|.|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~-yp~~~~~~~la~~~~----l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQ-SLNSKEKEEVAKKCG----ITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCC-CcCHHHHHHHHHHHC----cCHHHhhHhhhhcccccC
Confidence 4577899999999999999995 999999999999997 999999999999999976
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.36 E-value=1.8e-13 Score=103.62 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHHHH
Q 039144 9 WCPTPEQLMILEEMYRS---GVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLRRK 71 (208)
Q Consensus 9 t~FT~eQLqiLE~~F~~---n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r~~ 71 (208)
.-|+++++++|++-|.. + +||+.++|.+||.+++ |++++|++||||||+|.|+...+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~n-pYPs~~ek~~LA~~tg----Lt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYN-AYPSEQEKALLSQQTH----LSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGG-GSCCHHHHHHHHHHSS----SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhhhHHHHh
Confidence 45899999999999987 6 5999999999999996 999999999999999999875554
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.74 E-value=7.4e-10 Score=72.18 Aligned_cols=22 Identities=18% Similarity=0.551 Sum_probs=19.2
Q ss_pred CceeeccccchhhHHHHHHHHH
Q 039144 51 KNVFYWFQNHKARERQKLRRKL 72 (208)
Q Consensus 51 ~qVqvWFQNRRAReKRk~r~~~ 72 (208)
++|+|||||||||+|++.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 5899999999999999887753
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.55 E-value=0.43 Score=34.80 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccc
Q 039144 15 QLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQ 58 (208)
Q Consensus 15 QLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQ 58 (208)
=.+.|+++|.... ....++...|..+-. |+-.+|+-||-
T Consensus 17 ~~e~L~~Yy~~hk-~L~EeDl~~L~~ksk----ms~qqvkdwFa 55 (70)
T 2ys9_A 17 DIQPLERYWAAHQ-QLRETDIPQLSQASR----LSTQQVLDWFD 55 (70)
T ss_dssp CCHHHHHHHHHTC-CCCTTHHHHHHHHTT----CCHHHHHHHHH
T ss_pred cchHHHHHHHHhc-ccchhhHHHHHHHhC----CCHHHHHHHHH
Confidence 3578999999996 999999998888875 99999999994
No 80
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=79.09 E-value=1.1 Score=31.47 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 10 CPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
.+++.|.++|.-.|..+ +... +||+.|+ |++..|+.+...=|.|.|
T Consensus 37 ~L~~~~r~vl~l~~~~g--~s~~----eIA~~lg----is~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG--WSTA----QIATDLG----IAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp TSCHHHHHHHHHHHTSC--CCHH----HHHHHHT----SCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--CCHH----HHHHHHC----cCHHHHHHHHHHHHHHHH
Confidence 36788999999988777 3433 7999997 999999965544333333
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=76.56 E-value=1.2 Score=29.11 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccc
Q 039144 7 TRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQ 58 (208)
Q Consensus 7 ~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQ 58 (208)
+|..||+|.......++..+. .......+||.+++ |+...|..|..
T Consensus 2 ~r~~ys~efK~~~~~~~~~g~--s~~~~~~~vA~~~g----Is~~tl~~W~~ 47 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRNDN--DCKGNQRATARKYN----IHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHHCT--TTTTCHHHHHHHTT----SCHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHcCC--CcchHHHHHHHHHC----cCHHHHHHHHH
Confidence 466899999877777777662 31112347899986 98899999964
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=76.20 E-value=1.8 Score=31.67 Aligned_cols=51 Identities=12% Similarity=0.014 Sum_probs=37.8
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhH
Q 039144 6 STRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARE 64 (208)
Q Consensus 6 R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRARe 64 (208)
++|..+|.++...+-..+..+. .... .+||+.++ |+...|..|..+++...
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g-~~~~---~~~A~~~g----vs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENP-DLRK---GEIARRFN----IPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCT-TSCH---HHHHHHHT----CCHHHHHHHHHTHHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCC-CCcH---HHHHHHhC----CCHHHHHHHHhchhhhc
Confidence 4688999999977776764442 4554 25888886 99999999987776543
No 83
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=72.86 E-value=1.7 Score=31.50 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccch
Q 039144 10 CPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHK 61 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRR 61 (208)
.+++.|..+|. .|-.+ +... +||+.|+ ++...|+.+...=|
T Consensus 109 ~L~~~~r~v~~-~~~~g--~s~~----EIA~~lg----is~~tV~~~~~ra~ 149 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG--YSYR----EIATILS----KNLKSIDNTIQRIR 149 (164)
T ss_dssp HSCHHHHHHHH-HHTTT--CCHH----HHHHHHT----CCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC--CCHH----HHHHHHC----CCHHHHHHHHHHHH
Confidence 36788899999 67666 4443 7999997 99999976554333
No 84
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=71.83 E-value=1.3 Score=26.65 Aligned_cols=42 Identities=10% Similarity=0.202 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccch
Q 039144 10 CPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHK 61 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRR 61 (208)
.++++++..+..++..+. + ..+||+.|+ ++...|+.|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g~---s---~~~ia~~lg----vs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKGH---P---RQQLAIIFG----IGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTTC---C---HHHHHHTTS----CCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcCC---C---HHHHHHHHC----CCHHHHHHHHHHcc
Confidence 567777777777777652 2 346888886 99999999996544
No 85
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=71.35 E-value=1.3 Score=28.73 Aligned_cols=42 Identities=14% Similarity=-0.064 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccch
Q 039144 10 CPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHK 61 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRR 61 (208)
.+++.+.++|.-.|..+. ... +||+.|+ ++...|+.+...=|
T Consensus 15 ~L~~~~r~il~l~~~~g~--s~~----eIA~~lg----is~~tv~~~~~ra~ 56 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL--SYA----DAAAVCG----CPVGTIRSRVARAR 56 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC--CHH----HHHHHHT----SCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC--CHH----HHHHHHC----cCHHHHHHHHHHHH
Confidence 478999999999887763 433 7999996 99999986554333
No 86
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=69.38 E-value=3.1 Score=29.15 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=30.7
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeecc
Q 039144 6 STRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWF 57 (208)
Q Consensus 6 R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWF 57 (208)
+.|..||+++....-..+..+ .. ..+||.+|+ |+...|+.|.
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g--~s----~~~iA~~~g----Is~sTl~rW~ 59 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG--ES----KASVARDIG----VPESTLRGWC 59 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT--CC----HHHHHHHHT----CCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC--CC----HHHHHHHHC----cCHHHHHHHH
Confidence 456789999965555566655 22 347899996 9999999995
No 87
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=67.11 E-value=3 Score=24.36 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeecccc
Q 039144 10 CPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQN 59 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQN 59 (208)
.+++++...+-..+..+. . ..+||+.|+ |+...|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~g~--s----~~~IA~~lg----is~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV--S----LHEMSRKIS----RSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC--C----HHHHHHHHT----CCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCC--C----HHHHHHHHC----cCHHHHHHHHhh
Confidence 577888766666776663 3 347999996 999999988743
No 88
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=66.02 E-value=2.5 Score=31.02 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=35.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchh
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKA 62 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRA 62 (208)
+.+.+.-.+|+.|.++|+-++ .+ +.. ++||+.|+ |++..|+++..+=+.
T Consensus 27 ~~~~~~~~Lt~re~~Vl~l~~-~G--~s~----~EIA~~L~----iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 27 AGGYGDKRLSPKESEVLRLFA-EG--FLV----TEIAKKLN----RSIKTISSQKKSAMM 75 (99)
T ss_dssp CCCCSSSSCCHHHHHHHHHHH-HT--CCH----HHHHHHHT----SCHHHHHHHHHHHHH
T ss_pred cCCcccCCCCHHHHHHHHHHH-cC--CCH----HHHHHHHC----cCHHHHHHHHHHHHH
Confidence 344556789999999998865 44 333 37999997 999999876654333
No 89
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=64.66 E-value=3.4 Score=30.94 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 10 CPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
.+++.|.++|.-.|..+. ... +||+.|+ ++...|+.|...=|.+.++..
T Consensus 22 ~L~~~~r~vl~l~y~~g~--s~~----EIA~~lg----iS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY--SLA----EIADEFG----VSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC--CHH----HHHHHHT----CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--CHH----HHHHHHC----cCHHHHHHHHHHHHHHHHHHH
Confidence 478999999999988873 443 6999997 999999988876666666544
No 90
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=62.63 E-value=13 Score=27.80 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=29.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhh
Q 039144 4 AGSTRWCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLS 43 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~ 43 (208)
.+.+|..+|++|++.|.++|.. +.++.+..+...+-..|+
T Consensus 3 ~~~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg 46 (153)
T 3i5g_B 3 EAPRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLG 46 (153)
T ss_dssp ----CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTT
T ss_pred CcccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcC
Confidence 3456788999999999999963 336899987777777765
No 91
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=60.51 E-value=9.8 Score=28.17 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHHH
Q 039144 10 CPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKLR 69 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~r 69 (208)
.+++.|.++|.-.|..+ +... +||+.|+ +++..|+.+...=|.+.|+...
T Consensus 25 ~L~~~~r~vl~l~~~~g--~s~~----EIA~~lg----iS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED--YSLS----EIADTFN----VSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp GSCHHHHHHHHHHHTSC--CCHH----HHHHHTT----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--CCHH----HHHHHHC----cCHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999998887 3444 6999996 9999999877666666655443
No 92
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=59.22 E-value=8.5 Score=27.47 Aligned_cols=51 Identities=8% Similarity=0.002 Sum_probs=38.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhhccCCCCCCceeecc
Q 039144 5 GSTRWCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLSHFGKIEGKNVFYWF 57 (208)
Q Consensus 5 ~R~Rt~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWF 57 (208)
.+....++.+|++.|.++|.. +..+.+..+...+...|+. .+++..|+.+|
T Consensus 24 ~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~--~~~~~ei~~l~ 78 (100)
T 2lv7_A 24 EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGY--MPNEVELEVII 78 (100)
T ss_dssp TCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTC--CCCTTTHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 345567899999999999953 2368999988888888863 47777776555
No 93
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=57.94 E-value=3.7 Score=28.38 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhhccCCCCCCcee
Q 039144 9 WCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLSHFGKIEGKNVF 54 (208)
Q Consensus 9 t~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~~~g~LsE~qVq 54 (208)
|.+|++|+..++++|.. +..+.+.++...+-..++ +++..|.
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g----~~~~~~~ 46 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK----LPILELS 46 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHS----SCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC----CCHHHHH
Confidence 88999999999999965 225777776666655553 6555444
No 94
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=56.93 E-value=4.3 Score=31.35 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 10 CPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
.+++.|..+|.-.|..+ +.-. +||+.|+ |+...|+.+...=|.|.|+
T Consensus 187 ~L~~~~r~vl~l~~~~g--~s~~----EIA~~lg----is~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE--LPAK----EVAKILE----TSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTSC--CCHH----HHHHHTT----SCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC--CCHH----HHHHHhC----CCHHHHHHHHHHHHHHHHH
Confidence 36788888999888776 3433 6999996 9999998665544444443
No 95
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=56.17 E-value=2.9 Score=28.98 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 9 WCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 9 t~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
-.+|+.|.++|.-+ ..+ +... +||+.|+ |++..|+.+..+=+.|.+
T Consensus 20 ~~Lt~~e~~vl~l~-~~g--~s~~----eIA~~l~----is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLI-AQG--LPNK----MIARRLD----ITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHH-TTT--CCHH----HHHHHHT----SCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH-HcC--CCHH----HHHHHHC----cCHHHHHHHHHHHHHHHc
Confidence 35899999999985 444 3333 7999997 999999876654444443
No 96
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=56.07 E-value=4.6 Score=26.24 Aligned_cols=48 Identities=17% Similarity=0.132 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 7 TRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 7 ~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
.-..+|+.|.++|.-+ ..+ +.. .+||+.|+ ++...|+.+..+=+.|.+
T Consensus 8 ~~~~L~~~e~~il~~~-~~g--~s~----~eIA~~l~----is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 8 SKPLLTKREREVFELL-VQD--KTT----KEIASELF----ISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCCHHHHHHHHHH-TTT--CCH----HHHHHHHT----SCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHH-HcC--CCH----HHHHHHHC----CCHHHHHHHHHHHHHHHC
Confidence 4457899999999984 444 333 37999997 999999876655444443
No 97
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=55.33 E-value=7.7 Score=29.64 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHH----HhhccCCCCCCceeeccccc
Q 039144 1 MSPAGSTRWCPTPEQLMILEEMY-RSGVRTPNASQIQHITA----HLSHFGKIEGKNVFYWFQNH 60 (208)
Q Consensus 1 ~sp~~R~Rt~FT~eQLqiLE~~F-~~n~~yP~~~~R~qLA~----~L~~~g~LsE~qVqvWFQNR 60 (208)
|+ .++|..+|-+|...|=..+ +.++ -.+.. +||. +.+. +++...|..|..|+
T Consensus 4 m~--~~~R~~lT~~qK~~i~~~~~~~~~-~~~q~---~la~wa~~~f~~--~is~stis~ilk~k 60 (144)
T 1iuf_A 4 MG--KIKRRAITEHEKRALRHYFFQLQN-RSGQQ---DLIEWFREKFGK--DISQPSVSQILSSK 60 (144)
T ss_dssp CC--CCSSSCCCSHHHHHHHHHHHSSSS-CCCHH---HHHHHHHHHHSS--CCSSSSTTHHHHHH
T ss_pred CC--CCcCccCCHHHHHHHHHHHHHhCC-CCCHH---HHHHHHHHHHCC--CCcHHHHHHHHhhH
Confidence 55 6899999999999999999 5553 44443 5777 5532 58888999887553
No 98
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=55.16 E-value=3.1 Score=30.77 Aligned_cols=52 Identities=8% Similarity=0.063 Sum_probs=30.6
Q ss_pred CCCCHHHH-HH-HHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 9 WCPTPEQL-MI-LEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 9 t~FT~eQL-qi-LE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
..-+.++| .. ++.+|... +|-+. ...+||++.+ ++...|++.|.|+-.=..-
T Consensus 22 ~~~~r~~Il~aA~~~lf~~~-G~~~~-t~~~Ia~~ag----vs~~t~Y~~F~sK~~L~~~ 75 (212)
T 3nxc_A 22 KRNRREEILQSLALMLESSD-GSQRI-TTAKLAASVG----VSEAALYRHFPSKTRMFDS 75 (212)
T ss_dssp -CTTHHHHHHHHHHHHHC-------C-CHHHHHHHTT----SCHHHHHTTCSSHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcC-Chhhc-CHHHHHHHhC----CChhHHHHHCCCHHHHHHH
Confidence 44444443 22 33366664 25444 4668999996 9999999999998764443
No 99
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=54.23 E-value=7 Score=29.12 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCCCCCCCCCCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 1 MSPAGSTRWCPTPEQ-LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 1 ~sp~~R~Rt~FT~eQ-LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
|+.+++.|..-+.++ |+...++|... +|-.. .+.+||+..+ |+...|+..|.|+-.=..
T Consensus 4 M~r~~~~~~~~~r~~Il~aA~~lf~~~-G~~~~-s~~~Ia~~ag----vs~~t~Y~yF~sKe~L~~ 63 (203)
T 3ccy_A 4 MARTRSADYENIRDTIIERAAAMFARQ-GYSET-SIGDIARACE----CSKSRLYHYFDSKEAVLR 63 (203)
T ss_dssp --------CTTHHHHHHHHHHHHHHHT-CTTTS-CHHHHHHHTT----CCGGGGTTTCSCHHHHHH
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHc-CcccC-CHHHHHHHhC----CCcCeeeeeeCCHHHHHH
Confidence 444444444444443 45566788887 46655 4668999996 999999999999765444
No 100
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=53.43 E-value=2.5 Score=26.63 Aligned_cols=42 Identities=17% Similarity=0.374 Sum_probs=30.9
Q ss_pred CCCCCC--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccc
Q 039144 7 TRWCPT--PEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQ 58 (208)
Q Consensus 7 ~Rt~FT--~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQ 58 (208)
.|+.++ +++.+.+..++..+ +. ..+||+.|+ ++...|+.|..
T Consensus 10 ~~~~l~~~~~~~~~i~~l~~~g--~s----~~eIA~~lg----is~~TV~~~l~ 53 (55)
T 2x48_A 10 VRYYVESEDDLVSVAHELAKMG--YT----VQQIANALG----VSERKVRRYLE 53 (55)
T ss_dssp EEEEECSHHHHHHHHHHHHHTT--CC----HHHHHHHHT----SCHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHcC--CC----HHHHHHHHC----cCHHHHHHHHH
Confidence 344677 88888888887766 33 237999997 99999988864
No 101
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=53.10 E-value=6.4 Score=28.32 Aligned_cols=47 Identities=9% Similarity=-0.010 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchh
Q 039144 9 WCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKA 62 (208)
Q Consensus 9 t~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRA 62 (208)
..+++++...+... ..++ .-+.. +|+..|+ ..++...|..|+.....
T Consensus 59 ~~l~~~~~~~i~~~-~~~~-~~s~~---~i~~~lg--~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRA-ASNS-CKTAR---DIRNELQ--LSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHH-HHHC-CCCHH---HHHHHTT--CCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHH-HhCC-CCCHH---HHHHHHC--CCccHHHHHHHHHHCCC
Confidence 35899999888877 4432 34543 6888884 23777889999976554
No 102
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=50.72 E-value=6.1 Score=29.75 Aligned_cols=44 Identities=11% Similarity=-0.037 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhH
Q 039144 11 PTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARE 64 (208)
Q Consensus 11 FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRARe 64 (208)
+++.|.++|.-.|-.+ ++.. +||+.|+ +++..|+.+...=|.+.
T Consensus 141 L~~~~r~vl~l~~~~g--~s~~----EIA~~lg----is~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 141 LPEDLRMAITLRELDG--LSYE----EIAAIMD----CPVGTVRSRIFRAREAI 184 (194)
T ss_dssp SCHHHHHHHHHHHTTC--CCHH----HHHHHTT----SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC--CCHH----HHHHHHC----CCHHHHHHHHHHHHHHH
Confidence 5677888888877766 3443 6999996 99999986554433333
No 103
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=50.20 E-value=7.5 Score=27.59 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccc
Q 039144 10 CPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQ 58 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQ 58 (208)
.+|+.|.++|.-+ ..+ +.. ++||+.|+ |++..|+.+..
T Consensus 27 ~Lt~~e~~vl~l~-~~g--~s~----~eIA~~l~----is~~tV~~~l~ 64 (95)
T 3c57_A 27 GLTDQERTLLGLL-SEG--LTN----KQIADRMF----LAEKTVKNYVS 64 (95)
T ss_dssp CCCHHHHHHHHHH-HTT--CCH----HHHHHHHT----CCHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HcC--CCH----HHHHHHHC----cCHHHHHHHHH
Confidence 5899999999996 444 333 37999997 99999986544
No 104
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=49.07 E-value=6.8 Score=26.11 Aligned_cols=39 Identities=8% Similarity=0.018 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHhhccCCCCCCceeeccc
Q 039144 10 CPTPEQLMILEEMYR----SGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQ 58 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~----~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQ 58 (208)
.+++.|.++|.-.|. .+ +.. ++||+.|+ +++..|+.+..
T Consensus 10 ~L~~~er~il~l~~~l~~~~~--~s~----~eIA~~l~----is~~tV~~~~~ 52 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGRE--HTL----EEVGAYFG----VTRERIRQIEN 52 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC--CCH----HHHHHHHT----CCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCC--CCH----HHHHHHHC----CCHHHHHHHHH
Confidence 478999999999996 44 233 37999996 99999986543
No 105
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=47.66 E-value=1.6 Score=32.80 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=36.5
Q ss_pred CCCCCCCCCCCCH---HHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 1 MSPAGSTRWCPTP---EQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 1 ~sp~~R~Rt~FT~---eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
|++.+++|-.... .=|+.-.++|... +| + ....+||++.+ ++...|+..|.|+-.=..
T Consensus 1 M~~~r~~~~~~~~~r~~Il~aA~~lf~~~-G~-~-~t~~~IA~~ag----vs~~tlY~~F~sK~~L~~ 61 (196)
T 2qwt_A 1 MSLTRPLRADAARNRARVLEVAYDTFAAE-GL-G-VPMDEIARRAG----VGAGTVYRHFPTKQALVV 61 (196)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHT-CT-T-SCHHHHHHHTT----SCHHHHHHHCSSHHHHHH
T ss_pred CCCCccccchhhhHHHHHHHHHHHHHHhc-CC-C-CCHHHHHHHhC----CCHHHHHHHCCCHHHHHH
Confidence 6665544432222 2244456678887 48 6 57888999996 999999999999876444
No 106
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=46.80 E-value=3.6 Score=27.32 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 11 PTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 11 FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
+|+.|.++|.-+ ..+ +... +||+.|+ +++..|+.+..+=+.|.+
T Consensus 17 L~~~e~~vl~l~-~~g--~s~~----eIA~~l~----is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSAV-VAG--LPNK----SIAYDLD----ISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHHH-TTT--CCHH----HHHHHTT----SCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHH-HcC--CCHH----HHHHHHC----cCHHHHHHHHHHHHHHHc
Confidence 678899999884 444 3443 7999996 999999876654444444
No 107
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=46.52 E-value=7.9 Score=27.01 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHHh-c-CCCCCCHHHHHHHHHHhhccCCCCCCceeecccc
Q 039144 8 RWCPTPEQLMILEEMYR-S-GVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQN 59 (208)
Q Consensus 8 Rt~FT~eQLqiLE~~F~-~-n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQN 59 (208)
|..||+++....-..+. . + .. ..+||..++ |+...|+.|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g--~s----~~~ia~~~g----Is~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG--AS----LQQIANDLG----INRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG--SC----HHHHHHHHT----SCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--Ch----HHHHHHHHC----cCHHHHHHHHHH
Confidence 45799988866555553 3 4 22 347999996 999999999743
No 108
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=45.98 E-value=3.4 Score=28.86 Aligned_cols=45 Identities=22% Similarity=0.147 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 10 CPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
.+|+.|.++|.-+ ..+ +... +||+.|+ |++..|+.+..+=+.|.+
T Consensus 29 ~Lt~~e~~vl~l~-~~g--~s~~----eIA~~l~----is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLLI-AKG--YSNQ----EIASASH----ITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHHH-HTT--CCTT----HHHHHHT----CCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHH-HcC--CCHH----HHHHHHC----cCHHHHHHHHHHHHHHHC
Confidence 4788999999885 444 4554 6999996 999999976654444443
No 109
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=45.33 E-value=5.4 Score=29.13 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 18 ILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 18 iLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
.-.++|... ......+||+..+ ++...|+..|.|+-.=..
T Consensus 22 aA~~lf~~~----~~~t~~~Ia~~ag----vs~~t~Y~~F~sK~~L~~ 61 (190)
T 2v57_A 22 AAMLVLADH----PTAALGDIAAAAG----VGRSTVHRYYPERTDLLR 61 (190)
T ss_dssp HHHHHHTTC----TTCCHHHHHHHHT----CCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHc----CCCCHHHHHHHhC----CCHHHHHHHcCCHHHHHH
Confidence 334556554 4455668999996 999999999999765444
No 110
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=44.94 E-value=6.8 Score=25.73 Aligned_cols=39 Identities=5% Similarity=0.064 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHH----hcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccc
Q 039144 10 CPTPEQLMILEEMY----RSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQ 58 (208)
Q Consensus 10 ~FT~eQLqiLE~~F----~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQ 58 (208)
.+++.|.++|.-.| ..+ +.. ++||+.|+ +++..|+.+..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g--~s~----~eIA~~lg----is~~tV~~~~~ 47 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD--YTL----EEVGKQFD----VTRERIRQIEA 47 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC--CCH----HHHHHHHT----CCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCC--CCH----HHHHHHHC----cCHHHHHHHHH
Confidence 47899999999999 344 233 37999996 99999986543
No 111
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=43.39 E-value=7.7 Score=26.98 Aligned_cols=42 Identities=10% Similarity=0.183 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhhccCCCCCCcee
Q 039144 9 WCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLSHFGKIEGKNVF 54 (208)
Q Consensus 9 t~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~~~g~LsE~qVq 54 (208)
|.+|++|++.|+++|.. +..+.+.++...+-..+ ++++..|.
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~ 47 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT----GLPSTLLA 47 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTT----TCCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHc----CCCHHHHH
Confidence 78899999999999953 22577877555554443 35554444
No 112
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=43.20 E-value=15 Score=26.72 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=30.5
Q ss_pred CCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHhhccCCCCCCcee
Q 039144 7 TRWCPTPEQLMILEEMYRS---GVRTPNASQIQHITAHLSHFGKIEGKNVF 54 (208)
Q Consensus 7 ~Rt~FT~eQLqiLE~~F~~---n~~yP~~~~R~qLA~~L~~~g~LsE~qVq 54 (208)
..|.+|++++..+.++|.. +..+.+.++...+-..+ |+++..|.
T Consensus 5 ~~w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~----gl~~~el~ 51 (106)
T 1eh2_A 5 SPWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNS----KLPVDILG 51 (106)
T ss_dssp -CCSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTT----TCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHc----CCCHHHHH
Confidence 3589999999999999964 33578887555554444 36665555
No 113
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=42.38 E-value=12 Score=26.93 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeecccc
Q 039144 9 WCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQN 59 (208)
Q Consensus 9 t~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQN 59 (208)
..+|.++...+-.++..+. . ..+||+.|+ ++...|+.|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G~--s----~~~ia~~lg----is~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV--S----LHEMSRKIS----RSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC--C----HHHHHHHHT----CCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcCC--C----HHHHHHHHC----cCHHHHHHHHHc
Confidence 5689999888888887763 3 237899996 999999999864
No 114
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=42.17 E-value=11 Score=27.36 Aligned_cols=45 Identities=9% Similarity=0.071 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
|+.-.++|.... |-. ....+||++.+ ++...|++.|.|+..=..-
T Consensus 18 l~aA~~lf~~~G-~~~-~t~~~IA~~ag----vs~~t~Y~~F~sK~~L~~~ 62 (199)
T 3on2_A 18 LARAESTLEKDG-VDG-LSLRQLAREAG----VSHAAPSKHFRDRQALLDA 62 (199)
T ss_dssp HHHHHHHHHHHC-GGG-CCHHHHHHHTC---------CCCSSSSHHHHHHH
T ss_pred HHHHHHHHHhcC-hhh-hhHHHHHHHhC----CChHHHHHHhCCHHHHHHH
Confidence 445566777663 543 34668999986 9999999999997765443
No 115
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=42.14 E-value=6.6 Score=29.51 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
|+...++|.... |-.. ...+||++.+ ++...|+..|.|+-.=..-
T Consensus 36 l~aa~~l~~~~G-~~~~-ti~~IA~~ag----vs~~t~Y~~F~sK~~Ll~~ 80 (212)
T 2np3_A 36 LTAARVCFAERG-FDAT-SLRRIAETAG----VDQSLVHHFYGTKENLFLQ 80 (212)
T ss_dssp HHHHHHHC---------------------------------CCC-CHHHHH
T ss_pred HHHHHHHHHHcC-cccc-cHHHHHHHcC----CCHHHHHHHhCCHHHHHHH
Confidence 566677887773 5544 5678999986 9999999999998765443
No 116
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=40.81 E-value=5.4 Score=25.28 Aligned_cols=41 Identities=22% Similarity=0.147 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 14 EQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 14 eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
.|.++|.- +..+ +... +||+.|+ +++..|+.+..+=+.|.+
T Consensus 2 re~~vl~l-~~~g--~s~~----eIA~~l~----is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 2 RERQVLKL-IDEG--YTNH----GISEKLH----ISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHHHH-HHTS--CCSH----HHHHHTC----SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHcC--CCHH----HHHHHhC----CCHHHHHHHHHHHHHHHC
Confidence 46778877 5555 4555 6999996 999999876554443333
No 117
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=40.67 E-value=18 Score=28.87 Aligned_cols=55 Identities=5% Similarity=0.031 Sum_probs=35.4
Q ss_pred CCCCCCCCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhH
Q 039144 4 AGSTRWCPTPEQ-LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARE 64 (208)
Q Consensus 4 ~~R~Rt~FT~eQ-LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRARe 64 (208)
++++|...|.++ +..-.++|...- |-.. ...+||++++ ++...|+..|.||-.=.
T Consensus 9 ~r~~~~~~~r~~Il~aA~~l~~~~G-~~~~-s~~~IA~~aG----vs~~tlY~hF~~K~~Ll 64 (237)
T 2hxo_A 9 PERRQEPLSRERIVGAAVELLDTVG-ERGL-TFRALAERLA----TGPGAIYWHITGKAELL 64 (237)
T ss_dssp -------CCHHHHHHHHHHHHHHTT-TTTC-CHHHHHHHHT----SCGGGGGGTCCCHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHHhcC-cccC-CHHHHHHHHC----CChHHHHHhcCCHHHHH
Confidence 345556677766 455667777773 5554 4568999996 99999999999975543
No 118
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=40.42 E-value=12 Score=27.79 Aligned_cols=46 Identities=9% Similarity=0.189 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 17 MILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 17 qiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
+.-.++|... +|-.. ...+||++.+ ++...|+..|.|+-.=..--.
T Consensus 24 ~aA~~l~~~~-G~~~~-t~~~IA~~ag----vs~~t~Y~~F~sK~~L~~~~~ 69 (218)
T 3gzi_A 24 LAARNLFIER-PYAQV-SIREIASLAG----TDPGLIRYYFGSKEKLFSTMI 69 (218)
T ss_dssp HHHHHHHHTS-CCSCC-CHHHHHHHHT----SCTHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCcC-CHHHHHHHhC----CCHHHHHHHcCCHHHHHHHHH
Confidence 4455678777 36554 4668999996 999999999999876554433
No 119
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=38.78 E-value=14 Score=26.20 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=30.2
Q ss_pred CCCCCHHHHH-HHHHHHhcCCCCCCH-HHHHHHHHHhhccCCCCCCceeecc
Q 039144 8 RWCPTPEQLM-ILEEMYRSGVRTPNA-SQIQHITAHLSHFGKIEGKNVFYWF 57 (208)
Q Consensus 8 Rt~FT~eQLq-iLE~~F~~n~~yP~~-~~R~qLA~~L~~~g~LsE~qVqvWF 57 (208)
|..||+++.. +++.+.+.+..+++. ..+.+||.+++ |+...|+.|-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~g----Is~~tl~~W~ 51 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIG----CTPETLRVWV 51 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT----SCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHC----cCHHHHHHHH
Confidence 4578999885 444444443112331 35668999996 9999999995
No 120
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=38.06 E-value=3.2 Score=31.23 Aligned_cols=46 Identities=7% Similarity=0.057 Sum_probs=33.7
Q ss_pred HHHHHHHHh-cCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHH
Q 039144 16 LMILEEMYR-SGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQK 67 (208)
Q Consensus 16 LqiLE~~F~-~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk 67 (208)
+....++|. ... |-.. ...+||+..+ ++...|++.|.|+-.=..--
T Consensus 17 l~aa~~l~~~~~G-~~~~-ti~~Ia~~Ag----vs~~t~Y~~F~sK~~Ll~~~ 63 (220)
T 3lsj_A 17 MSAARHLMESGRG-FGSL-SLREVTRAAG----IVPAGFYRHFSDMDQLGLAL 63 (220)
T ss_dssp HHHHHHHTTTSCC-GGGC-CHHHHHHHHT----SCGGGGTTTCSSHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cccC-CHHHHHHHhC----CChhHHHHHcCCHHHHHHHH
Confidence 556667787 663 5443 5668999996 99999999999976654433
No 121
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=37.23 E-value=5.6 Score=30.70 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
++...++|.... |-. ....+||++.+ ++...|++.|.|+-.=..
T Consensus 19 l~AA~~l~~~~G-~~~-~tv~~IA~~ag----vs~~t~Y~~F~sK~~Ll~ 62 (231)
T 2qib_A 19 IGVALDLFSRRS-PDE-VSIDEIASAAG----ISRPLVYHYFPGKLSLYE 62 (231)
T ss_dssp HHHHHHHHHHSC-GGG-CCHHHHHHHHT----SCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcC-chh-cCHHHHHHHhC----CCHHHHHHHCCCHHHHHH
Confidence 344556787773 543 45678999996 999999999999765443
No 122
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=36.99 E-value=3 Score=30.77 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=35.4
Q ss_pred CCCCCCCCCCCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 1 MSPAGSTRWCPTPEQ-LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 1 ~sp~~R~Rt~FT~eQ-LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
|+.+++.|..-+.++ ++...++|.... |-. ....+||++.+ ++...|+..|.|+-.=..-
T Consensus 2 m~~~~~~~~~~~r~~Il~aa~~l~~~~G-~~~-~t~~~Ia~~ag----vs~~t~Y~~F~sK~~L~~~ 62 (202)
T 3lwj_A 2 MPIPLEKQNKERRQKILTCSLDLFIEKG-YYN-TSIRDIIALSE----VGTGTFYNYFVDKEDILKN 62 (202)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHC-TTT-CCHHHHHHHHC----SCHHHHHHHCSSHHHHHHH
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHcC-ccc-CCHHHHHHHhC----CCchhHHHHcCCHHHHHHH
Confidence 444554443333333 345566787763 543 35668999996 9999999999997654443
No 123
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=36.67 E-value=10 Score=26.22 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHhhccCCCCCCceeeccc
Q 039144 10 CPTPEQLMILEEMYR----SGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQ 58 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~----~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQ 58 (208)
.+++.|.++|.-.|. .+ +.. ++||+.|+ ++...|+.+..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~--~s~----~EIA~~lg----is~~tV~~~~~ 60 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKP--KTL----EEVGQYFN----VTRERIRQIEV 60 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC--CCH----HHHHHHHT----CCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCC--CCH----HHHHHHHC----CCHHHHHHHHH
Confidence 468899999999986 44 233 37999996 99999986643
No 124
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=36.64 E-value=4 Score=30.16 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=34.8
Q ss_pred CCCCCCCCCCCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 1 MSPAGSTRWCPTPEQ-LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 1 ~sp~~R~Rt~FT~eQ-LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
|..++++|..-+.++ |+...++|.... |-. ....+||+..+ ++...|+..|.|+-.=..
T Consensus 4 M~~~~~~~~~~~r~~Il~aa~~l~~~~G-~~~-~ti~~IA~~ag----vs~~t~Y~~F~sK~~L~~ 63 (212)
T 3knw_A 4 MTTHQVKKSEAKRQHILDSGFHLVLRKG-FVG-VGLQEILKTSG----VPKGSFYHYFESKEAFGC 63 (212)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHC-STT-CCHHHHHHHHT----CCHHHHHHHCSSHHHHHH
T ss_pred ccccccccchhhHHHHHHHHHHHHHHcC-Ccc-CCHHHHHHHhC----CChHHHHHHCCCHHHHHH
Confidence 334444443333333 355666787763 544 35668999996 999999999999876443
No 125
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=36.34 E-value=29 Score=30.42 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCC
Q 039144 9 WCPTPEQLMILEEMYRSGVRTPN 31 (208)
Q Consensus 9 t~FT~eQLqiLE~~F~~n~~yP~ 31 (208)
..-|+++++++|+.|+..+ -+.
T Consensus 353 ~~~t~~~l~e~~~Ff~~~~-~~~ 374 (419)
T 3rjo_A 353 QFSTRTRLEEVKGFFSSLK-ENG 374 (419)
T ss_dssp TCCSHHHHHHHHHHHHTTT-TC-
T ss_pred cCCCHHHHHHHHHHHHhCc-ccc
Confidence 3468999999999999874 443
No 126
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=35.27 E-value=7.9 Score=28.63 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
|+.-.++|... +| + ....+||+..+ ++...|+..|-|+-.=..
T Consensus 21 l~aA~~lf~~~-G~-~-~s~~~IA~~ag----vs~~tlY~~F~sK~~L~~ 63 (194)
T 2q24_A 21 LAAAVRVFSEE-GL-D-AHLERIAREAG----VGSGTLYRNFPTREALIE 63 (194)
T ss_dssp HHHHHHHHHHH-CT-T-CCHHHHHHHTT----CCHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHhc-Cc-C-CCHHHHHHHhC----CChHHHHHHcCCHHHHHH
Confidence 45566778777 47 6 68889999996 999999999999865444
No 127
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=33.74 E-value=2.7 Score=31.51 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
|+.-.++|... +|-.. ...+||+..+ ++...|+..|.|+-+=..
T Consensus 18 l~aA~~lf~~~-G~~~~-s~~~IA~~aG----vs~~tlY~~F~sKe~L~~ 61 (197)
T 2hyt_A 18 LATARKVFSER-GYADT-SMDDLTAQAS----LTRGALYHHFGDKKGLLA 61 (197)
T ss_dssp HHHHHHHHHHH-CTTTC-CHHHHHHHHT----CCTTHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHh-CcccC-CHHHHHHHhC----CCHHHHHHHcCCHHHHHH
Confidence 55666788776 36554 4668999996 999999999999765444
No 128
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.48 E-value=12 Score=30.53 Aligned_cols=48 Identities=21% Similarity=0.069 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHH
Q 039144 9 WCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQK 67 (208)
Q Consensus 9 t~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk 67 (208)
-.+++.|.++|.-.+ .+ +... +||+.|+ |++..|++...+=|.|.|..
T Consensus 196 ~~L~~~erevl~L~~-~G--~s~~----EIA~~L~----iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIR-KG--LSSK----EIAATLY----ISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHH-TT--CCHH----HHHHHHT----CCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHH-cC--CCHH----HHHHHHC----cCHHHHHHHHHHHHHHHcCC
Confidence 368999999999975 44 4554 7999997 99999997666555555443
No 129
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=33.13 E-value=20 Score=24.88 Aligned_cols=47 Identities=21% Similarity=0.075 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccC------CCCCCceeecccc
Q 039144 9 WCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFG------KIEGKNVFYWFQN 59 (208)
Q Consensus 9 t~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g------~LsE~qVqvWFQN 59 (208)
..+++++...+.++...++ .-+.. +|+..|...| .++...|..|...
T Consensus 74 ~~l~~~~~~~i~~~~~~~~-~~s~~---~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSP-GMFSW---EIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCT-TCCHH---HHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHHhCc-chHHH---HHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 4678888888888887763 45544 6777775442 2566778877653
No 130
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.69 E-value=14 Score=28.12 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhh
Q 039144 8 RWCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLS 43 (208)
Q Consensus 8 Rt~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~ 43 (208)
+..+|++|++.|+++|.. +..+.+..+...+-..|+
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg 41 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLG 41 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcC
Confidence 467999999999999963 236888887777776665
No 131
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=32.62 E-value=39 Score=24.87 Aligned_cols=50 Identities=16% Similarity=0.015 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccC----C--CCCCceeeccccch
Q 039144 8 RWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFG----K--IEGKNVFYWFQNHK 61 (208)
Q Consensus 8 Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g----~--LsE~qVqvWFQNRR 61 (208)
+..+++++...+.++...++ .-+.. +|+..|...+ + ++...|..|...+.
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~-~~s~~---~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNP-TMFAW---EIRDRLLAERVCDNDTVPSVSSINRIIRTKV 143 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCT-TCCHH---HHHHHHHHTTSSCTTTSCCHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHhCc-chhHH---HHHHHHHHhcccccCCCcCHHHHHHHHHHHh
Confidence 45689999999999998774 45554 5777774332 2 66677887775443
No 132
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=32.61 E-value=9.8 Score=28.13 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
++...++|.... |-.. ...+||++.+ ++...|++.|.|+-.=..
T Consensus 23 l~aa~~l~~~~G-~~~~-ti~~Ia~~ag----vs~~t~Y~~F~sK~~Ll~ 66 (207)
T 2rae_A 23 STVGIELFTEQG-FDAT-SVDEVAEASG----IARRTLFRYFPSKNAIPW 66 (207)
T ss_dssp HHHHHHHHHHHC-TTTS-CHHHHHHHTT----SCHHHHHHHCSSTTTGGG
T ss_pred HHHHHHHHHHcC-cccC-CHHHHHHHhC----CCcchHhhhCCCHHHHHH
Confidence 455666787763 6443 4668999986 999999999999875443
No 133
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.54 E-value=31 Score=23.02 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=35.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCC-ceeeccccch
Q 039144 3 PAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGK-NVFYWFQNHK 61 (208)
Q Consensus 3 p~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~-qVqvWFQNRR 61 (208)
+.|...-.+|++..+++++.|..-. -+- ..||..|. +=+.. .|..|+.+++
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~g--k~w---~~Ia~~l~---~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHP--KNF---GLIASYLE---RKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHST--TCH---HHHHHHCT---TSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhC--CCH---HHHHHHcC---CCCHHHHHHHHHHhcC
Confidence 4566778999999999999999853 233 46787775 23333 3668877665
No 134
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=32.53 E-value=28 Score=25.63 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
|+.-.++|.... |-.. ...+||++.+ ++...|+..|.|+-.=..
T Consensus 25 l~aA~~lf~~~G-~~~~-t~~~IA~~ag----vs~~tlY~~F~sK~~L~~ 68 (216)
T 3qqa_A 25 KAVALELFLTKG-YQET-SLSDIIKLSG----GSYSNIYDGFKSKEGLFF 68 (216)
T ss_dssp HHHHHHHHHHTC-TTTC-CHHHHHHHHT----TSCCSSSCSCCSHHHHHH
T ss_pred HHHHHHHHHHcC-hhhC-CHHHHHHHhC----CCHHHHHHhcCCHHHHHH
Confidence 455667787773 5544 4668999996 999999999999765433
No 135
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=32.34 E-value=16 Score=26.02 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeecc
Q 039144 8 RWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWF 57 (208)
Q Consensus 8 Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWF 57 (208)
-..+|+.+.++|.-++ .+ +... +||+.|+ |+++.|+...
T Consensus 27 ~~~Lt~rE~~Vl~l~~-~G--~s~~----eIA~~L~----iS~~TV~~~~ 65 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-KG--FTNQ----EIADALH----LSKRSIEYSL 65 (90)
T ss_dssp --CCCHHHHHHHHHHH-TT--CCHH----HHHHHHT----CCHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH-cC--CCHH----HHHHHHC----cCHHHHHHHH
Confidence 4569999999999887 44 3443 7999997 9999998543
No 136
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=32.26 E-value=19 Score=27.05 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHhhccCCCCCCceeec
Q 039144 10 CPTPEQLMILEEMYRS------GVRTPNASQIQHITAHLSHFGKIEGKNVFYW 56 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~------n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvW 56 (208)
-+|++|++.|.++|.. +.++.+..+...+-..|+. .+++..|+.-
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~--~~t~~el~~~ 52 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGM--NPTEAQVHQH 52 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTC--CCCHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCC--CCCHHHHHHH
Confidence 4799999999999852 2357888877777677762 2455555433
No 137
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=32.15 E-value=19 Score=28.78 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhH
Q 039144 7 TRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARE 64 (208)
Q Consensus 7 ~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRARe 64 (208)
+...+|+.|.++|.-++ .+ +.+. +||+.|+ |+++.|++...|=+.|.
T Consensus 172 ~~~~Lt~~e~~vl~~~~-~g--~s~~----eIa~~l~----is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 172 PKQMLSPREMLCLVWAS-KG--KTAS----VTANLTG----INARTVQHYLDKARAKL 218 (236)
T ss_dssp GGGSCCHHHHHHHHHHH-TT--CCHH----HHHHHHC----CCHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHH-cC--CCHH----HHHHHHC----cCHHHHHHHHHHHHHHh
Confidence 34579999999998754 55 3444 6999996 99999997665544443
No 138
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=31.92 E-value=19 Score=26.68 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
++...++|.+.. |-.. ...+||++.+ |+...|+..|.|+-.=...
T Consensus 19 l~aa~~lf~~~G-~~~~-tv~~Ia~~ag----vs~~t~Y~~F~sK~~L~~~ 63 (195)
T 2iu5_A 19 AKAFKDLMQSNA-YHQI-SVSDIMQTAK----IRRQTFYNYFQNQEELLSW 63 (195)
T ss_dssp HHHHHHHHHHSC-GGGC-CHHHHHHHHT----SCGGGGGGTCSSHHHHHHH
T ss_pred HHHHHHHHHhCC-CCee-CHHHHHHHhC----CCHHHHHHHcCCHHHHHHH
Confidence 556667888773 5543 5668999996 9999999999997665443
No 139
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=31.41 E-value=23 Score=27.30 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=29.5
Q ss_pred CCCCCCCHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHhhccCCCCCCcee-ec
Q 039144 6 STRWCPTPEQLMILEEMYRSGV---RTPNASQIQHITAHLSHFGKIEGKNVF-YW 56 (208)
Q Consensus 6 R~Rt~FT~eQLqiLE~~F~~n~---~yP~~~~R~qLA~~L~~~g~LsE~qVq-vW 56 (208)
+..|..|+++...++++|..-. .|.+.++ +..-+.. .+|++..+. +|
T Consensus 22 ~~~W~it~ee~~~y~~iF~~lD~~dG~Isg~e---lr~~~~~-sgLp~~~L~~Iw 72 (121)
T 3fia_A 22 LDTWAITVEERAKHDQQFHSLKPISGFITGDQ---ARNFFFQ-SGLPQPVLAQIW 72 (121)
T ss_dssp TTTSCCCHHHHHHHHHHHHHTCCBTTBEEHHH---HHHHHGG-GCCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCeECHHH---HHHHHHH-cCCCHHHHHHHH
Confidence 4689999999999999997543 3455543 3333322 246655543 55
No 140
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=30.84 E-value=33 Score=24.05 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=34.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhhccCCCCCCceeecc
Q 039144 5 GSTRWCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLSHFGKIEGKNVFYWF 57 (208)
Q Consensus 5 ~R~Rt~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWF 57 (208)
...+..+|++|++.|+.+|.. +..+.+..+...+...++. .+++..|...|
T Consensus 11 ~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~~~~~~~~~l~ 65 (161)
T 3fwb_A 11 GPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGF--ELPKREILDLI 65 (161)
T ss_dssp TTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTC--CCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCC--CCCHHHHHHHH
Confidence 345678999999999999963 2257888877766666642 24444444333
No 141
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=30.64 E-value=49 Score=22.84 Aligned_cols=47 Identities=6% Similarity=0.024 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHhhccCCCCCCceeecccc
Q 039144 11 PTPEQLMILEEMYRSG----VRTPNASQIQHITAHLSHFGKIEGKNVFYWFQN 59 (208)
Q Consensus 11 FT~eQLqiLE~~F~~n----~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQN 59 (208)
||++|++.|+++|..- ..+.+..+...+...++. .+++..|...|..
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~~~~~ 51 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGK--NPTDEYLEGMMSE 51 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSC--CCCHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCC--CCCHHHHHHHHHh
Confidence 6899999999999642 257888877777777653 3566667666654
No 142
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=30.28 E-value=9.3 Score=28.56 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 17 MILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 17 qiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
+.-.++|... +|-.. ...+||+..+ |+...|+..|.|+-.=..
T Consensus 21 ~aA~~lf~~~-G~~~~-s~~~IA~~ag----vs~~tlY~~F~sKe~L~~ 63 (204)
T 2ibd_A 21 DIAATLFAER-GLRAT-TVRDIADAAG----ILSGSLYHHFDSKESMVD 63 (204)
T ss_dssp HHHHHHHHHH-CSTTC-CHHHHHHHTT----SCHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHc-Cchhc-CHHHHHHHhC----CCchhHHHhcCCHHHHHH
Confidence 3445677766 35544 4668999996 999999999999876544
No 143
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=30.18 E-value=31 Score=22.38 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhh
Q 039144 7 TRWCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLS 43 (208)
Q Consensus 7 ~Rt~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~ 43 (208)
....+|++|+..|+.+|.. +..+.+..+...+...++
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g 44 (86)
T 1j7q_A 4 KARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLG 44 (86)
T ss_dssp CCCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTS
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHc
Confidence 4456899999999999953 225888887777776665
No 144
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=30.04 E-value=9.5 Score=28.29 Aligned_cols=60 Identities=8% Similarity=0.136 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 1 MSPAGSTRWCPTPEQ-LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 1 ~sp~~R~Rt~FT~eQ-LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
|+..+..|..-+.++ |+.-.++|.... |-+. .+.+||+..+ ++...|+..|.|+-.=..-
T Consensus 1 M~~~~~~~~~~~r~~Il~aA~~lf~~~G-~~~~-ti~~Ia~~ag----vs~~t~Y~~F~sK~~L~~~ 61 (216)
T 3f0c_A 1 MTDNKIKNEDGKLELIINAAQKRFAHYG-LCKT-TMNEIASDVG----MGKASLYYYFPDKETLFEA 61 (216)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHC-SSSC-CHHHHHHHHT----CCHHHHHHHCSSHHHHHHH
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHcC-CCcC-CHHHHHHHhC----CCHHHHHHHcCCHHHHHHH
Confidence 444444454444444 355566787773 6444 4668999996 9999999999997665443
No 145
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=28.69 E-value=19 Score=26.60 Aligned_cols=45 Identities=11% Similarity=0.383 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeecc
Q 039144 2 SPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWF 57 (208)
Q Consensus 2 sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWF 57 (208)
.+.++.||+.. +-+.+++++...+. +. .++|++.+ |+...|..|-
T Consensus 26 ~~~~~rrWs~~-~Kl~VV~~~~~g~~---s~---~e~arry~----Is~s~i~~W~ 70 (95)
T 2jrt_A 26 PPLDTRRWVAS-RKAAVVKAVIHGLI---TE---REALDRYS----LSEEEFALWR 70 (95)
T ss_dssp CCSSCCCCCHH-HHHHHHHHHHTTSS---CH---HHHHHHTT----CCHHHHHHHH
T ss_pred ChHhhhccCHH-HHHHHHHHHHcCCC---CH---HHHHHHhC----CCHHHHHHHH
Confidence 34555665543 45777777776663 33 35777775 9999999994
No 146
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=28.34 E-value=11 Score=27.88 Aligned_cols=44 Identities=5% Similarity=0.069 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
|+.-.++|... +| . ....+||++.+ ++...|+..|.|+-.=..-
T Consensus 22 l~aA~~lf~~~-G~-~-~s~~~Ia~~ag----vs~~t~Y~~F~sK~~L~~~ 65 (199)
T 2rek_A 22 IEAAAAEVARH-GA-D-ASLEEIARRAG----VGSATLHRHFPSRWGLLQA 65 (199)
T ss_dssp HHHHHHHHHHH-GG-G-CCHHHHHHHHT----CCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHhc-CC-C-CCHHHHHHHhC----CchHHHHHHCCCHHHHHHH
Confidence 44556778777 48 6 57889999996 9999999999998765443
No 147
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=28.05 E-value=39 Score=23.27 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhhccCCCCCCceeecc
Q 039144 10 CPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLSHFGKIEGKNVFYWF 57 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWF 57 (208)
.+|++|++.|+.+|.. +..+.+..+...+...++. .+++..|...|
T Consensus 1 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~--~~~~~~~~~l~ 50 (149)
T 2mys_C 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQ--NPTNAEINKIL 50 (149)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 3789999999999952 2257888777666666642 24444555444
No 148
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=27.76 E-value=10 Score=27.60 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=34.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhhccCCCCCCceeecc
Q 039144 4 AGSTRWCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLSHFGKIEGKNVFYWF 57 (208)
Q Consensus 4 ~~R~Rt~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWF 57 (208)
.....|.+|++++..|.++|.. +..+.+.+ +|..-|... ++++..|..+|
T Consensus 9 ~~~~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~---el~~~l~~~-gl~~~el~~i~ 62 (110)
T 1iq3_A 9 YPDEPWRITEEQREYYVNQFRSLQPDPSSFISGS---VAKNFFTKS-KLSIPELSYIW 62 (110)
T ss_dssp CCCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHH---HHHHHCCSS-SCSSCCHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHCCCCCCeEcHH---HHHHHHHHc-CCCHHHHHHHH
Confidence 3457899999999999999964 22467766 455555433 47777776544
No 149
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.40 E-value=45 Score=26.93 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHhhccCCCCCCceeeccccch
Q 039144 29 TPNASQIQHITAHLSHFGKIEGKNVFYWFQNHK 61 (208)
Q Consensus 29 yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRR 61 (208)
..+.+++..|.+.+... ....|-.||=||+
T Consensus 58 ~Lt~~ei~~l~~~i~~~---~~~~ip~w~lNr~ 87 (152)
T 3iz6_M 58 ELSAEEMDRLMAVVHNP---RQFKVPDWFLNRK 87 (152)
T ss_dssp TSCHHHHHHHHHHHHSC---SSCCCCCCSCSCC
T ss_pred cCCHHHHHHHHHHHHhh---cccCcchhhhhhh
Confidence 56778888888888621 2234778999998
No 150
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=27.28 E-value=5.2 Score=29.33 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
|+.-.++|.... |-.. ...+||+..+ ++...|++.|.|+-.=..-
T Consensus 17 l~aA~~lf~~~G-~~~~-s~~~Ia~~ag----vs~~t~Y~~F~sK~~L~~~ 61 (203)
T 3b81_A 17 ANKIWDIFIANG-YENT-TLAFIINKLG----ISKGALYHYFSSKEECADA 61 (203)
T ss_dssp HHHHHHHHHHHC-STTC-CHHHHHHHHT----CCHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHcC-cccC-cHHHHHHHhC----CCchhHHHHcCCHHHHHHH
Confidence 455667787763 5543 4668999996 9999999999997654443
No 151
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=26.86 E-value=26 Score=25.45 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
|+...++|.... |-.. ...+||++.+ ++...|+..|.|+-.=..
T Consensus 22 l~aa~~l~~~~G-~~~~-t~~~Ia~~ag----vs~~t~Y~~F~sK~~Ll~ 65 (211)
T 3him_A 22 RAAAIEVFAAKG-YGAT-TTREIAASLD----MSPGAVYPHYKTKESLLY 65 (211)
T ss_dssp HHHHHHHHHHHC-STTC-CHHHHHHHTT----CCTTSSTTTCSSHHHHHH
T ss_pred HHHHHHHHHHcC-CCcC-CHHHHHHHhC----CCcChhhhcCCCHHHHHH
Confidence 455567777763 6544 4668999986 999999999999865444
No 152
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=26.66 E-value=30 Score=24.81 Aligned_cols=45 Identities=9% Similarity=0.190 Sum_probs=29.5
Q ss_pred CCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhhccCCCCCCcee
Q 039144 6 STRWCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLSHFGKIEGKNVF 54 (208)
Q Consensus 6 R~Rt~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~~~g~LsE~qVq 54 (208)
-.-|.+|+++++.|+++|.. +..+.+.++...+... .++++..|.
T Consensus 3 ~~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~----~~~~~~~~~ 51 (111)
T 2kgr_A 3 VAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQ----SSLPQAQLA 51 (111)
T ss_dssp SCCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHT----TCCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHh----CCCCHHHHH
Confidence 36799999999999999964 2246676655444331 235554444
No 153
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=26.56 E-value=28 Score=26.12 Aligned_cols=47 Identities=17% Similarity=0.046 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccC------CCCCCceeeccc
Q 039144 8 RWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFG------KIEGKNVFYWFQ 58 (208)
Q Consensus 8 Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g------~LsE~qVqvWFQ 58 (208)
+..+++++.+.|.++...++ .-+.. +|++.|...+ .++...|..|..
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~-~~s~~---~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNP-TMFAW---EIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCS-SSCHH---HHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCc-cchHH---HHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 45678888888888887763 44543 5677775433 355556665543
No 154
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=26.43 E-value=5.5 Score=29.10 Aligned_cols=58 Identities=7% Similarity=0.053 Sum_probs=34.7
Q ss_pred CCCCCCCCCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 3 PAGSTRWCPTPEQ-LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 3 p~~R~Rt~FT~eQ-LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
+++..|..-+.++ |..-.++|.... | +.....+||++.+ ++...|+..|.|+-.=..-
T Consensus 6 ~~~~~~~~~~r~~Il~aA~~l~~~~G-~-~~~t~~~IA~~ag----vs~~t~Y~~F~sK~~L~~~ 64 (191)
T 4aci_A 6 VAAGDKPTNSRQEILEGARRCFAEHG-Y-EGATVRRLEEATG----KSRGAIFHHFGDKENLFLA 64 (191)
T ss_dssp --------CHHHHHHHHHHHHHHHHH-H-HHCCHHHHHHHHT----CCHHHHHHHHSSHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhC-c-ccCCHHHHHHHHC----CCchHHHHHCCCHHHHHHH
Confidence 3444444444444 345566776663 3 3345668999996 9999999999998765543
No 155
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=25.70 E-value=27 Score=26.11 Aligned_cols=44 Identities=5% Similarity=0.018 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
|+...++|.... |-.. ...+||++.+ |+...|+..|.|+-.=..
T Consensus 34 l~aa~~lf~~~G-~~~~-tv~~IA~~ag----vs~~t~Y~~F~sK~~Ll~ 77 (215)
T 2qko_A 34 VNAAIEVLAREG-ARGL-TFRAVDVEAN----VPKGTASNYFPSRDDLFD 77 (215)
T ss_dssp HHHHHHHHHHTC-TTTC-CHHHHHHHSS----STTTCHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHhC-hhhc-cHHHHHHHcC----CCcchHHHhCCCHHHHHH
Confidence 455667888773 6443 5668999986 999999999999765444
No 156
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=25.03 E-value=15 Score=26.60 Aligned_cols=50 Identities=6% Similarity=0.151 Sum_probs=35.3
Q ss_pred CCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 11 PTPEQ-LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 11 FT~eQ-LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
-|.++ ++...++|.... |-. ....+||++.+ ++...|+..|.|+-.=..-
T Consensus 8 ~~r~~Il~aa~~l~~~~G-~~~-~t~~~Ia~~ag----vs~~t~Y~~F~sK~~L~~~ 58 (183)
T 1zk8_A 8 LTLQKIVETAAEIADANG-VQE-VTLASLAQTLG----VRSPSLYNHVKGLQDVRKN 58 (183)
T ss_dssp CCHHHHHHHHHHHHHHHC-GGG-CCHHHHHHHHT----SCHHHHTTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-ccc-cCHHHHHHHcC----CCchHHHHHcCCHHHHHHH
Confidence 34443 456677787763 543 35668999996 9999999999997665443
No 157
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=24.94 E-value=34 Score=25.16 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
++.-.++|.... |-. ....+||++.+ ++...|++.|.|+-.=..
T Consensus 19 l~aA~~lf~~~G-~~~-~t~~~IA~~ag----vs~~tlY~~F~sK~~L~~ 62 (217)
T 3nrg_A 19 IDVLLDEFAQND-YDS-VSINRITERAG----IAKGSFYQYFADKKDCYL 62 (217)
T ss_dssp HHHHHHHHHHSC-GGG-CCHHHHHHHHT----CCTTGGGGTCSSHHHHHH
T ss_pred HHHHHHHHHhcC-ccc-CCHHHHHHHhC----CcHHHHHHHcCCHHHHHH
Confidence 455667787773 543 35668999996 999999999999765443
No 158
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=24.85 E-value=35 Score=24.64 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
|+.-.++|.... |-+. ...+||+..+ |+...|++.|.|+-.=..
T Consensus 23 l~aa~~l~~~~G-~~~~-s~~~Ia~~ag----vs~~t~Y~~F~sK~~L~~ 66 (206)
T 3kz9_A 23 MEIALEVFARRG-IGRG-GHADIAEIAQ----VSVATVFNYFPTREDLVD 66 (206)
T ss_dssp HHHHHHHHHHSC-CSSC-CHHHHHHHHT----SCHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHhcC-cccc-cHHHHHHHhC----CCHHHHHHHcCCHHHHHH
Confidence 344556777773 5544 4668999996 999999999999765443
No 159
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=24.35 E-value=25 Score=22.80 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhhccCCCCCCcee
Q 039144 10 CPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLSHFGKIEGKNVF 54 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~~~g~LsE~qVq 54 (208)
.+|+++++.|+.+|.. +..+.+..+...+...++ .+++..|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g---~~~~~~~~ 49 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG---SVTPDEVR 49 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT---TCCHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC---CCCHHHHH
Confidence 5799999999999953 224677775555554443 34444443
No 160
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=24.09 E-value=20 Score=22.61 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhh
Q 039144 11 PTPEQLMILEEMYRS----GVRTPNASQIQHITAHLS 43 (208)
Q Consensus 11 FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~ 43 (208)
+|++++..|..+|.. +..+.+..+...+...++
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g 37 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALG 37 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhC
Confidence 578999999999953 224777777666666664
No 161
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=23.83 E-value=15 Score=28.69 Aligned_cols=47 Identities=13% Similarity=0.264 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQKL 68 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk~ 68 (208)
|+.-.++|...- |-.. ...+||+..+ |+...|++.|.|+..=..--.
T Consensus 49 l~AA~~lf~~~G-~~~~-t~~~IA~~aG----vs~~tlY~~F~sK~~L~~~v~ 95 (255)
T 3g1o_A 49 LATAENLLEDRP-LADI-SVDDLAKGAG----ISRPTFYFYFPSKEAVLLTLL 95 (255)
T ss_dssp HHHHHHHHTTSC-GGGC-CHHHHHHHHT----CCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CccC-cHHHHHHHhC----CCHHHHHHHcCCHHHHHHHHH
Confidence 566677887773 5443 4668999996 999999999999876554433
No 162
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=23.68 E-value=24 Score=28.30 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=36.4
Q ss_pred CCCCCCCCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 4 AGSTRWCPTPEQ-LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 4 ~~R~Rt~FT~eQ-LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
++++|...|.++ +..-.++|... .|-.. ...+||++++ ++...|+..|.||-.=..
T Consensus 22 ~~~~~~~~tr~~Il~aA~~l~~~~-G~~~~-s~~~IA~~aG----vs~~tlY~hF~~K~~Ll~ 78 (241)
T 2hxi_A 22 HMAGRRRWSTEQILDAAAELLLAG-DAETF-SVRKLAASLG----TDSSSLYRHFRNKTELLR 78 (241)
T ss_dssp ------CCCHHHHHHHHHHHHSSS-SCCCC-CHHHHHHHTT----SCHHHHHHHTSSHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHHhc-CcccC-CHHHHHHHhC----cCHHHHHHHcCCHHHHHH
Confidence 344556677766 45666778777 35554 4557999996 999999999999765443
No 163
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=23.37 E-value=38 Score=27.01 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=33.4
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhh
Q 039144 7 TRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKAR 63 (208)
Q Consensus 7 ~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAR 63 (208)
+...+|+.|+++|.-+ ..+ +... +||+.|+ |+++.|++...|=+.|
T Consensus 170 ~~~~Lt~~e~~vl~~~-~~g--~s~~----eIa~~l~----is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 170 DAAWLDPKEATYLRWI-AVG--KTME----EIADVEG----VKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCCCHHHHHHHHHH-TTT--CCHH----HHHHHHT----CCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH-HcC--CCHH----HHHHHHC----cCHHHHHHHHHHHHHH
Confidence 3457999999999875 455 3444 6999996 9999998665543333
No 164
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=23.36 E-value=38 Score=25.32 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeecccc
Q 039144 9 WCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQN 59 (208)
Q Consensus 9 t~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQN 59 (208)
..+|.++...+-..+..+. + ..+||+.|+ ++...|..|+..
T Consensus 24 ~~~s~e~r~~ii~l~~~G~---s---~~~IA~~lg----is~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQGV---R---PCDISRQLR----VSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHTC---C---HHHHHHHHT----CCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcCC---C---HHHHHHHHC----cCHHHHHHHHHH
Confidence 3688888877777787663 2 236899996 999999999864
No 165
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=23.30 E-value=61 Score=22.86 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhhccCCCCCCceeecccc
Q 039144 9 WCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQN 59 (208)
Q Consensus 9 t~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQN 59 (208)
..+|++|+..|+.+|.. +..+.+.++...+...++. .+++..|...|.+
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~~~~~ 62 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGR--APDDKELTAMLKE 62 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSS--CCCHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHHHh
Confidence 46899999999999953 2358888877777777752 3566667666653
No 166
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=23.13 E-value=33 Score=29.56 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=39.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCcee
Q 039144 1 MSPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVF 54 (208)
Q Consensus 1 ~sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVq 54 (208)
||-+.-+-..+|.++|..|+-.=..+. -++.+++.+|+..|.. .|++..+|.
T Consensus 6 ~~~~~np~~~ps~d~L~~l~~~~~Sn~-vAT~eei~~I~~~l~~-lGvp~~~v~ 57 (226)
T 4dox_A 6 MSTPNIAFPAITQEQMSSIKVDPTSNL-LPSQEQLKSVSTLMVA-AKVPAASVT 57 (226)
T ss_dssp -----CCSCCCCHHHHHHCCCCCCCSS-SCCHHHHHHHHHHHHH-TTCCGGGHH
T ss_pred cCCCCCCCCCCCHHHHHHccCCccccC-CCCHHHHHHHHHHHHH-cCCCHHHHH
Confidence 566677788899999999987777775 8999999999999975 678887654
No 167
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=22.83 E-value=11 Score=29.08 Aligned_cols=45 Identities=11% Similarity=0.262 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
|+.-.++|...- |-.. ...+||++.+ |+...|+..|.|+-.=..-
T Consensus 50 l~aA~~lf~e~G-~~~~-t~~~IA~~aG----vs~~tlY~~F~sK~~L~~a 94 (236)
T 3q0w_A 50 LATAENLLEDRP-LADI-SVDDLAKGAG----ISRPTFYFYFPSKEAVLLT 94 (236)
T ss_dssp HHHHHHHHHHSC-GGGC-CHHHHHHHHT----CCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcC-cccC-CHHHHHHHhC----CcHHHHHHHCCCHHHHHHH
Confidence 455567787773 5433 4668999996 9999999999998765543
No 168
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=22.49 E-value=19 Score=26.08 Aligned_cols=47 Identities=9% Similarity=0.227 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 14 EQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 14 eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
.=++...++|.... |-.. ...+||+..+ ++...|+..|.|+-.=..-
T Consensus 15 ~il~aa~~lf~~~G-~~~~-tv~~Ia~~ag----vs~~t~Y~~F~sK~~L~~~ 61 (196)
T 3he0_A 15 QILAAAEQLIAESG-FQGL-SMQKLANEAG----VAAGTIYRYFSDKEHLLEE 61 (196)
T ss_dssp HHHHHHHHHHHHHC-TTTC-CHHHHHHHHT----SCHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccC-CHHHHHHHhC----CCcchHHHhcCCHHHHHHH
Confidence 34566777887773 5544 5668999996 9999999999997655443
No 169
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=22.45 E-value=25 Score=25.20 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeecccc-chhhHH
Q 039144 14 EQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQN-HKARER 65 (208)
Q Consensus 14 eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQN-RRAReK 65 (208)
.=++...++|.... |-.. ...+||++.+ ++...|+..|.| +-.=..
T Consensus 10 ~Il~aa~~l~~~~G-~~~~-t~~~Ia~~ag----vs~~t~Y~~F~~sK~~L~~ 56 (191)
T 1sgm_A 10 KILHTASRLSQLQG-YHAT-GLNQIVKESG----APKGSLYHFFPNGKEELAI 56 (191)
T ss_dssp HHHHHHHHHHHHHC-TTTC-CHHHHHHHHC----CCSCHHHHSTTTCHHHHHH
T ss_pred HHHHHHHHHHHHcC-cccc-CHHHHHHHHC----CCchhHHHHccccHHHHHH
Confidence 34566677887773 5444 4668999996 999999999998 765444
No 170
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=22.42 E-value=14 Score=27.55 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
|+.-.++|.... |-.. ...+||+..+ |+...|++.|.|+-.=..
T Consensus 29 l~aA~~lf~~~G-~~~~-t~~~IA~~ag----vs~~t~Y~~F~sK~~L~~ 72 (214)
T 2zb9_A 29 LHAVGELLLTEG-TAQL-TFERVARVSG----VSKTTLYKWWPSKGALAL 72 (214)
T ss_dssp HHHHHHHHHHHC-GGGC-CHHHHHHHHC----CCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhC-cccC-CHHHHHHHHC----CCHHHHHHHCCCHHHHHH
Confidence 455566777763 5443 4668999996 999999999999765443
No 171
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=22.20 E-value=22 Score=26.14 Aligned_cols=44 Identities=11% Similarity=0.341 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
|+...++|.... |-.. ...+||++.+ ++...|+..|.|+-.=..
T Consensus 37 l~aa~~l~~~~G-~~~~-tv~~Ia~~ag----vs~~t~Y~~F~sK~~Ll~ 80 (218)
T 3dcf_A 37 IKVATELFREKG-YYAT-SLDDIADRIG----FTKPAIYYYFKSKEDVLF 80 (218)
T ss_dssp HHHHHHHHHHTC-TTTC-CHHHHHHHHT----CCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcC-cccC-cHHHHHHHhC----CCHHHHHHHcCCHHHHHH
Confidence 456667787773 6544 4668999996 999999999999876443
No 172
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=22.09 E-value=22 Score=25.49 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 15 QLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 15 QLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
=+....++|.... |-+. ...+||++.+ ++...|+..|.|+-.=..
T Consensus 14 Il~aa~~l~~~~G-~~~~-tv~~Ia~~ag----vs~~t~Y~~F~sK~~L~~ 58 (195)
T 3ppb_A 14 ILETALQLFVSQG-FHGT-STATIAREAG----VATGTLFHHFPSKEQLLE 58 (195)
T ss_dssp HHHHHHHHHHHTC-STTS-CHHHHHHHHT----CCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhcC-cccC-CHHHHHHHhC----CChhHHHHHcCCHHHHHH
Confidence 3566677888773 6544 4678999996 999999999999866443
No 173
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.89 E-value=54 Score=21.87 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHhhccC-CCCCCce
Q 039144 9 WCPTPEQLMILEEMYRSG-VRTPNASQIQHITAHLSHFG-KIEGKNV 53 (208)
Q Consensus 9 t~FT~eQLqiLE~~F~~n-~~yP~~~~R~qLA~~L~~~g-~LsE~qV 53 (208)
...|+.++.+|+.+.+.+ . .++.+ +|++.|...+ +++...|
T Consensus 13 ~~~t~~r~~IL~~l~~~~~~-~~s~~---el~~~l~~~~~~is~~TV 55 (83)
T 2fu4_A 13 LKVTLPRLKILEVLQEPDNH-HVSAE---DLYKRLIDMGEEIGLATV 55 (83)
T ss_dssp CCCCHHHHHHHHHHTSGGGS-SBCHH---HHHHHHHHTTCCCCHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHhCCCCCHhhH
Confidence 467999999999877653 3 57776 5677774322 3554444
No 174
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=21.88 E-value=44 Score=21.40 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhh
Q 039144 7 TRWCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLS 43 (208)
Q Consensus 7 ~Rt~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~ 43 (208)
....+|++++..|+.+|.. +..+.+..+...+...++
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g 44 (85)
T 2ktg_A 4 QKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALG 44 (85)
T ss_dssp CCCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTS
T ss_pred hhhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC
Confidence 3456899999999999964 224677776655555543
No 175
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=21.86 E-value=47 Score=21.78 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhh
Q 039144 10 CPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLS 43 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~ 43 (208)
.++++++..|..+|.. +..+.+..+...+...++
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g 50 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG 50 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC
Confidence 4789999999999953 225788887776666664
No 176
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=21.68 E-value=57 Score=26.29 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHhcC
Q 039144 11 PTPEQLMILEEMYRSG 26 (208)
Q Consensus 11 FT~eQLqiLE~~F~~n 26 (208)
..+.|++.||+.|+.-
T Consensus 229 lkp~~~k~le~~f~k~ 244 (278)
T 4ffb_C 229 LKPIQVKDLHKLFAKV 244 (278)
T ss_dssp SCHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 4566777777777654
No 177
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=21.28 E-value=68 Score=23.64 Aligned_cols=50 Identities=6% Similarity=-0.027 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCcee
Q 039144 1 MSPAGSTRWCPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVF 54 (208)
Q Consensus 1 ~sp~~R~Rt~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVq 54 (208)
||........+|+++-..||.+...-. .-+...=..||+.|. |=+..+|+
T Consensus 1 ~~~~~~~~~~WT~eEd~~L~~al~~~~-~~~~~rW~~IA~~vp---GRT~~q~k 50 (93)
T 2cjj_A 1 MASTRGSGRPWSAKENKAFERALAVYD-KDTPDRWANVARAVE---GRTPEEVK 50 (93)
T ss_dssp -------CCSCCHHHHHHHHHHHHHSC-TTCTTHHHHHHHHST---TCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHcC---CCCHHHHH
Confidence 666666778899999999999887542 111234567999985 34455554
No 178
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=21.17 E-value=19 Score=26.03 Aligned_cols=45 Identities=11% Similarity=0.202 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
|+.-.++|.... |-+. ...+||++.+ ++...|+..|.|+-.=..-
T Consensus 13 l~aa~~l~~~~G-~~~~-t~~~IA~~ag----vs~~t~Y~~F~sK~~L~~~ 57 (199)
T 3qbm_A 13 VAQAAALFNVSG-YAGT-AISDIMAATG----LEKGGIYRHFESKEQLALA 57 (199)
T ss_dssp HHHHHHHHHHHC-STTC-CHHHHHHHHT----CCHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcC-CHHHHHHHhC----CCccHHHHhCCCHHHHHHH
Confidence 455667777763 5544 4668999996 9999999999997665443
No 179
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=20.77 E-value=22 Score=26.74 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARE 64 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRARe 64 (208)
|+.=.++|... +|-.. ...+||+..+ ++...|+..|.|+-.=.
T Consensus 17 l~aA~~lf~~~-G~~~~-s~~~IA~~aG----vskgtlY~~F~sKe~L~ 59 (210)
T 2wui_A 17 LDAAERVFLEK-GVGTT-AMADLADAAG----VSRGAVYGHYKNKIEVC 59 (210)
T ss_dssp HHHHHHHHHHS-CTTTC-CHHHHHHHHT----SCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHc-Ccccc-CHHHHHHHhC----CCHHHHHHHcCCHHHHH
Confidence 34445677777 36554 4668999996 99999999999976533
No 180
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=20.52 E-value=8.1 Score=29.06 Aligned_cols=39 Identities=13% Similarity=-0.009 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccc
Q 039144 10 CPTPEQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQ 58 (208)
Q Consensus 10 ~FT~eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQ 58 (208)
.+++.|.++|.-.|-.+ ++.. +||+.|+ |++..|+....
T Consensus 93 ~Lp~~~r~vl~L~~~~g--~s~~----EIA~~lg----is~~tV~~~l~ 131 (157)
T 2lfw_A 93 RMTPLSRQALLLTAMEG--FSPE----DAAYLIE----VDTSEVETLVT 131 (157)
T ss_dssp TSCTTHHHHHTTTSSSC--CCHH----HHHHTTT----SCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCHH----HHHHHHC----cCHHHHHHHHH
Confidence 36777888888777666 3433 7999996 99999986543
No 181
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=20.38 E-value=17 Score=26.84 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHHH
Q 039144 14 EQLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQK 67 (208)
Q Consensus 14 eQLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKRk 67 (208)
.=++...++|.... |-. ....+||++.+ ++...|+..|.|+-.=..--
T Consensus 13 ~Il~aa~~l~~~~G-~~~-~ti~~IA~~ag----vs~~t~Y~~F~sK~~L~~~~ 60 (193)
T 2dg8_A 13 RILAATLDLIAEEG-IAR-VSHRRIAQRAG----VPLGSMTYHFTGIEQLLREA 60 (193)
T ss_dssp HHHHHHHHHHHHHC-GGG-CCHHHHHHHHT----SCTHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhh-ccHHHHHHHhC----CCchhhheeCCCHHHHHHHH
Confidence 33566677787763 543 35668999996 99999999999987655543
No 182
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=20.26 E-value=25 Score=25.17 Aligned_cols=45 Identities=7% Similarity=0.204 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
++...++|.... |-. ....+||++.+ ++...++..|.|+-.=..-
T Consensus 14 l~aa~~l~~~~G-~~~-~ti~~Ia~~ag----vs~~t~Y~~F~sK~~L~~~ 58 (188)
T 3qkx_A 14 FSATDRLMAREG-LNQ-LSMLKLAKEAN----VAAGTIYLYFKNKDELLEQ 58 (188)
T ss_dssp HHHHHHHHHHSC-STT-CCHHHHHHHHT----CCHHHHHHHSSSHHHHHHH
T ss_pred HHHHHHHHHhcC-ccc-CCHHHHHHHhC----CCcchHHHHcCCHHHHHHH
Confidence 455667787774 544 45678999996 9999999999997665443
No 183
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=20.16 E-value=22 Score=26.10 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhH
Q 039144 15 QLMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARE 64 (208)
Q Consensus 15 QLqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRARe 64 (208)
-++...++|.... |-.. ...+||++.+ ++...|+..|.|+-.=.
T Consensus 12 Il~aA~~l~~~~G-~~~~-t~~~Ia~~ag----vs~~t~Y~~F~sK~~Ll 55 (195)
T 2dg7_A 12 LKRAALELYSEHG-YDNV-TVTDIAERAG----LTRRSYFRYFPDKREVL 55 (195)
T ss_dssp HHHHHHHHHHHSC-GGGC-CHHHHHHHTT----CCHHHHHHHCSSTTGGG
T ss_pred HHHHHHHHHHhcC-cccc-CHHHHHHHhC----CCHHHHHHHcCCHHHHH
Confidence 3556667787773 5443 4668999986 99999999999986543
No 184
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=20.16 E-value=29 Score=25.85 Aligned_cols=44 Identities=9% Similarity=0.235 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARER 65 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReK 65 (208)
|+.-.++|... +|-.. .+.+||+..+ ++...|+..|.|+-.=..
T Consensus 17 l~aA~~lf~~~-G~~~~-s~~~IA~~aG----vskgtlY~~F~sKe~L~~ 60 (210)
T 2xdn_A 17 IEAAERAFYKR-GVART-TLADIAELAG----VTRGAIYWHFNNKAELVQ 60 (210)
T ss_dssp HHHHHHHHHHH-CSTTC-CHHHHHHHHT----CCTTHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHc-CcccC-cHHHHHHHHC----CChHHHHHHhCCHHHHHH
Confidence 44556778776 36554 4668999996 999999999999765443
No 185
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=20.16 E-value=43 Score=31.36 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHhhccCCCCCCcee
Q 039144 7 TRWCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHLSHFGKIEGKNVF 54 (208)
Q Consensus 7 ~Rt~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L~~~g~LsE~qVq 54 (208)
.|-.||++|++.|+++|.. +..+.+.++...+-..|+. .+++..|+
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~--~~TeeEI~ 341 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ--NPTEAELQ 341 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC--CCCHHHHH
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCC--CCCHHHHH
Confidence 3567999999999999952 3368888877777777652 24554454
No 186
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=20.07 E-value=46 Score=30.09 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=34.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccc
Q 039144 18 ILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNH 60 (208)
Q Consensus 18 iLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNR 60 (208)
+|+++...+.--++.+++.+....++...|++...|.-|++++
T Consensus 339 il~~Ia~~e~I~vt~eev~~~i~~~A~~yg~~~~~~~~~~~~~ 381 (433)
T 3gty_X 339 VIEVLAQEKGISVNDEELEKEAEELAPFWGISPDRAKSLVKAR 381 (433)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHTTSTTTTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 6788886666688999888888888888888888888898753
No 187
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=20.04 E-value=1.1e+02 Score=21.33 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=25.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHh
Q 039144 5 GSTRWCPTPEQLMILEEMYRS----GVRTPNASQIQHITAHL 42 (208)
Q Consensus 5 ~R~Rt~FT~eQLqiLE~~F~~----n~~yP~~~~R~qLA~~L 42 (208)
...+..+|++|++.|..+|.. +..+.+..+...+...|
T Consensus 4 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~ 45 (153)
T 2ovk_B 4 APRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSL 45 (153)
T ss_dssp ---CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTT
T ss_pred CcccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHh
Confidence 456889999999999999963 22577877554444443
No 188
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=20.00 E-value=26 Score=25.02 Aligned_cols=45 Identities=2% Similarity=0.131 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhhccCCCCCCceeeccccchhhHHH
Q 039144 16 LMILEEMYRSGVRTPNASQIQHITAHLSHFGKIEGKNVFYWFQNHKARERQ 66 (208)
Q Consensus 16 LqiLE~~F~~n~~yP~~~~R~qLA~~L~~~g~LsE~qVqvWFQNRRAReKR 66 (208)
++...++|.... |-.. ...+||+..+ |+...++..|.|+-.=...
T Consensus 18 l~aa~~l~~~~G-~~~~-tv~~Ia~~ag----vs~~t~Y~~F~sK~~L~~~ 62 (177)
T 3kkc_A 18 YNAFISLLQEND-YSKI-TVQDVIGLAN----VGRSTFYSHYESKEVLLKE 62 (177)
T ss_dssp HHHHHHHTTTSC-TTTC-CHHHHHHHHC----CCHHHHTTTCSSTHHHHHH
T ss_pred HHHHHHHHHhCC-hhHh-hHHHHHHHhC----CcHhhHHHHcCCHHHHHHH
Confidence 456677887773 5544 4668999996 9999999999998655443
Done!