Query 039146
Match_columns 84
No_of_seqs 100 out of 1004
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 11:05:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4drs_A Pyruvate kinase; glycol 99.8 3.5E-21 1.2E-25 145.8 9.1 83 1-83 385-467 (526)
2 3hqn_D Pyruvate kinase, PK; TI 99.8 5.1E-21 1.7E-25 144.2 8.5 83 1-83 354-436 (499)
3 3gr4_A Pyruvate kinase isozyme 99.8 7.1E-21 2.4E-25 144.6 8.7 83 1-83 404-486 (550)
4 3khd_A Pyruvate kinase; malari 99.8 9.9E-21 3.4E-25 143.1 9.1 83 1-83 379-461 (520)
5 3gg8_A Pyruvate kinase; malari 99.8 1.5E-20 5.3E-25 141.8 9.2 83 1-83 370-452 (511)
6 1a3w_A Pyruvate kinase; allost 99.8 4.5E-20 1.5E-24 139.1 8.6 83 1-83 355-437 (500)
7 3t05_A Pyruvate kinase, PK; te 99.8 2.4E-19 8.3E-24 137.5 7.7 81 1-83 355-435 (606)
8 2e28_A Pyruvate kinase, PK; al 99.8 7.8E-19 2.7E-23 134.4 9.2 81 1-83 336-416 (587)
9 1e0t_A Pyruvate kinase, PK; ph 99.8 3E-19 1E-23 133.8 4.4 61 23-83 353-413 (470)
10 3qtg_A Pyruvate kinase, PK; TI 99.7 3E-18 1E-22 128.1 7.4 63 20-83 354-416 (461)
11 1vp8_A Hypothetical protein AF 96.4 0.011 3.8E-07 39.9 6.6 49 23-71 26-74 (201)
12 1t57_A Conserved protein MTH16 96.1 0.019 6.4E-07 38.9 6.2 48 23-71 34-81 (206)
13 3hgm_A Universal stress protei 88.9 1.3 4.5E-05 26.1 5.6 42 27-69 97-147 (147)
14 2z08_A Universal stress protei 87.8 2.5 8.4E-05 24.8 6.3 42 27-69 86-136 (137)
15 3tnj_A Universal stress protei 87.2 2.1 7.1E-05 25.4 5.8 45 27-72 96-148 (150)
16 1mjh_A Protein (ATP-binding do 85.7 3.6 0.00012 24.7 6.4 42 27-69 107-157 (162)
17 3dlo_A Universal stress protei 83.9 2.7 9.4E-05 25.6 5.3 42 27-69 104-154 (155)
18 2dum_A Hypothetical protein PH 83.1 5.7 0.00019 24.0 6.5 45 27-72 104-157 (170)
19 3s3t_A Nucleotide-binding prot 82.2 4.7 0.00016 23.6 5.7 42 27-69 94-145 (146)
20 1tq8_A Hypothetical protein RV 82.1 5.1 0.00017 24.5 6.0 43 28-71 107-158 (163)
21 3fdx_A Putative filament prote 81.8 5.5 0.00019 23.2 5.9 42 27-69 93-142 (143)
22 1q77_A Hypothetical protein AQ 81.6 2.5 8.5E-05 24.7 4.3 41 28-69 97-137 (138)
23 3pfn_A NAD kinase; structural 81.6 1.1 3.7E-05 32.5 3.0 34 38-71 244-281 (365)
24 2xhz_A KDSD, YRBH, arabinose 5 80.8 2.2 7.6E-05 26.6 4.0 34 40-74 96-134 (183)
25 3fg9_A Protein of universal st 79.8 4.2 0.00014 24.3 4.9 42 27-69 105-155 (156)
26 2gm3_A Unknown protein; AT3G01 79.2 8.1 0.00028 23.5 6.2 45 28-73 112-165 (175)
27 3sho_A Transcriptional regulat 78.5 2.8 9.7E-05 26.2 4.0 34 40-74 87-125 (187)
28 1m3s_A Hypothetical protein YC 77.0 2.8 9.6E-05 26.2 3.6 32 41-73 80-116 (186)
29 1jmv_A USPA, universal stress 76.4 8.9 0.00031 22.2 5.9 44 27-71 89-138 (141)
30 3idf_A USP-like protein; unive 76.3 4.7 0.00016 23.4 4.3 39 28-69 91-137 (138)
31 3afo_A NADH kinase POS5; alpha 76.1 1.9 6.7E-05 31.3 3.0 33 39-71 227-263 (388)
32 1tk9_A Phosphoheptose isomeras 72.1 3.6 0.00012 25.6 3.2 34 40-74 110-148 (188)
33 2yva_A DNAA initiator-associat 71.4 4.3 0.00015 25.5 3.5 34 40-74 109-147 (196)
34 1tzb_A Glucose-6-phosphate iso 71.4 5.6 0.00019 27.2 4.3 32 41-73 80-116 (302)
35 3odp_A Putative tagatose-6-pho 71.1 2.2 7.5E-05 30.8 2.2 34 41-74 109-148 (393)
36 1x92_A APC5045, phosphoheptose 70.9 4.5 0.00015 25.6 3.5 33 40-73 113-150 (199)
37 2xbl_A Phosphoheptose isomeras 70.4 4.5 0.00015 25.4 3.4 33 40-73 116-153 (198)
38 3etn_A Putative phosphosugar i 68.5 5.6 0.00019 26.0 3.6 35 40-74 106-146 (220)
39 1jeo_A MJ1247, hypothetical pr 68.0 6.2 0.00021 24.4 3.6 33 41-74 83-120 (180)
40 3fxa_A SIS domain protein; str 67.0 4.6 0.00016 25.6 2.9 34 40-74 92-130 (201)
41 3g68_A Putative phosphosugar i 65.9 5.3 0.00018 28.1 3.3 34 40-74 82-120 (352)
42 1vim_A Hypothetical protein AF 65.9 3.8 0.00013 26.3 2.3 33 41-74 90-127 (200)
43 1moq_A Glucosamine 6-phosphate 65.8 3.9 0.00013 28.8 2.5 33 41-73 100-137 (368)
44 3trj_A Phosphoheptose isomeras 64.4 6.4 0.00022 25.4 3.3 34 40-74 114-152 (201)
45 3fj1_A Putative phosphosugar i 64.0 6.2 0.00021 27.7 3.3 33 41-74 92-129 (344)
46 2e5f_A Hypothetical protein PH 63.9 8.1 0.00028 26.7 3.9 31 42-72 81-112 (325)
47 3loq_A Universal stress protei 63.7 13 0.00045 24.5 4.8 45 27-72 238-291 (294)
48 3eua_A Putative fructose-amino 63.2 5.1 0.00018 27.9 2.8 34 40-74 74-112 (329)
49 3c3j_A Putative tagatose-6-pho 62.9 4 0.00014 29.0 2.2 34 40-73 103-142 (384)
50 1z0s_A Probable inorganic poly 60.9 5.4 0.00019 27.7 2.5 22 39-60 171-192 (278)
51 2aml_A SIS domain protein; 469 60.5 6 0.0002 28.0 2.7 34 40-73 97-135 (373)
52 2a3n_A Putative glucosamine-fr 60.4 9 0.00031 26.8 3.6 33 40-73 102-139 (355)
53 2i2w_A Phosphoheptose isomeras 59.0 6.7 0.00023 25.2 2.6 33 40-73 131-168 (212)
54 3fkj_A Putative phosphosugar i 59.0 4.8 0.00016 28.3 2.0 33 41-74 90-127 (347)
55 3knz_A Putative sugar binding 57.9 8.3 0.00029 27.4 3.1 34 39-73 96-134 (366)
56 3olq_A Universal stress protei 57.9 28 0.00094 23.0 5.6 45 27-72 98-151 (319)
57 3loq_A Universal stress protei 57.0 33 0.0011 22.5 5.9 37 35-72 118-163 (294)
58 2poc_A D-fructose-6- PH, isome 56.5 7.6 0.00026 27.4 2.7 32 41-73 98-134 (367)
59 3tbf_A Glucosamine--fructose-6 56.3 6.2 0.00021 28.0 2.2 34 41-74 102-140 (372)
60 3i0z_A Putative tagatose-6-pho 56.2 6.1 0.00021 28.4 2.2 35 40-74 109-149 (389)
61 3mt0_A Uncharacterized protein 55.5 33 0.0011 22.5 5.7 42 27-69 224-274 (290)
62 3cvj_A Putative phosphoheptose 55.2 6.9 0.00024 25.7 2.2 33 40-73 108-145 (243)
63 1j5x_A Glucosamine-6-phosphate 54.1 8 0.00027 27.0 2.5 31 42-73 102-137 (342)
64 2bpl_A Glucosamine--fructose-6 53.5 8.1 0.00028 29.2 2.5 33 41-73 340-377 (608)
65 2zj3_A Glucosamine--fructose-6 53.5 9.3 0.00032 27.0 2.8 32 41-73 108-144 (375)
66 2i2c_A Probable inorganic poly 50.9 12 0.00042 25.2 3.0 32 40-71 148-183 (272)
67 3hba_A Putative phosphosugar i 50.1 12 0.0004 26.2 2.8 34 40-74 90-128 (334)
68 1ve1_A O-acetylserine sulfhydr 46.9 48 0.0016 22.3 5.5 41 32-72 156-202 (304)
69 1nri_A Hypothetical protein HI 46.7 15 0.00052 25.2 2.9 34 40-74 140-178 (306)
70 3dwg_A Cysteine synthase B; su 46.6 47 0.0016 22.8 5.5 42 31-72 167-213 (325)
71 2v03_A Cysteine synthase B; py 45.7 50 0.0017 22.3 5.4 42 32-73 155-202 (303)
72 2an1_A Putative kinase; struct 45.5 18 0.00061 24.4 3.1 32 40-71 175-210 (292)
73 2qip_A Protein of unknown func 44.5 29 0.001 21.5 3.8 49 25-75 95-145 (165)
74 3jx9_A Putative phosphoheptose 44.5 20 0.0007 23.0 3.1 31 40-71 77-112 (170)
75 3iuy_A Probable ATP-dependent 44.1 41 0.0014 21.1 4.6 40 40-79 58-110 (228)
76 4h27_A L-serine dehydratase/L- 44.0 66 0.0022 22.5 6.0 41 32-72 185-232 (364)
77 1y7l_A O-acetylserine sulfhydr 42.7 50 0.0017 22.4 5.1 42 32-73 158-206 (316)
78 3tbh_A O-acetyl serine sulfhyd 42.6 64 0.0022 22.3 5.7 42 31-72 166-213 (334)
79 3cis_A Uncharacterized protein 41.9 73 0.0025 21.0 5.9 38 29-69 258-304 (309)
80 1yt5_A Inorganic polyphosphate 41.6 11 0.00036 25.4 1.4 32 40-71 147-182 (258)
81 2rkb_A Serine dehydratase-like 41.6 73 0.0025 21.5 5.8 42 31-72 144-192 (318)
82 1z7w_A Cysteine synthase; tran 41.5 64 0.0022 21.9 5.5 41 32-72 162-208 (322)
83 1p5j_A L-serine dehydratase; l 41.4 72 0.0025 22.4 5.8 42 31-72 184-232 (372)
84 2q3b_A Cysteine synthase A; py 41.2 66 0.0023 21.7 5.5 42 32-73 162-209 (313)
85 3fwz_A Inner membrane protein 40.1 46 0.0016 19.5 4.1 41 39-79 70-114 (140)
86 1u0t_A Inorganic polyphosphate 39.1 22 0.00077 24.4 2.8 31 40-70 187-221 (307)
87 3pc3_A CG1753, isoform A; CBS, 39.1 64 0.0022 23.7 5.4 43 31-73 210-258 (527)
88 3eod_A Protein HNR; response r 38.3 51 0.0017 18.2 6.0 44 32-75 43-91 (130)
89 4d9b_A D-cysteine desulfhydras 38.2 66 0.0023 22.2 5.2 42 32-73 187-236 (342)
90 2pqm_A Cysteine synthase; OASS 37.6 60 0.0021 22.4 4.9 40 34-73 175-220 (343)
91 3l6b_A Serine racemase; pyrido 37.5 75 0.0026 22.0 5.4 41 32-72 167-212 (346)
92 3ist_A Glutamate racemase; str 37.3 28 0.00096 23.7 3.1 42 29-70 56-98 (269)
93 2gn0_A Threonine dehydratase c 36.7 81 0.0028 21.7 5.5 41 32-72 179-224 (342)
94 1tdj_A Biosynthetic threonine 36.5 76 0.0026 23.8 5.5 41 32-72 170-215 (514)
95 1v71_A Serine racemase, hypoth 36.4 77 0.0026 21.5 5.2 41 32-72 165-210 (323)
96 2egu_A Cysteine synthase; O-ac 36.1 59 0.002 21.9 4.6 42 32-73 159-206 (308)
97 3l9w_A Glutathione-regulated p 34.6 54 0.0019 23.5 4.4 46 34-79 62-111 (413)
98 2qr3_A Two-component system re 34.5 61 0.0021 18.0 6.1 41 34-74 41-91 (140)
99 1j0a_A 1-aminocyclopropane-1-c 34.3 1E+02 0.0035 20.9 5.6 42 31-72 170-217 (325)
100 1qde_A EIF4A, translation init 33.9 84 0.0029 19.4 5.2 38 42-79 54-98 (224)
101 1ve5_A Threonine deaminase; ri 33.9 89 0.003 21.0 5.2 33 40-72 169-205 (311)
102 3ljk_A Glucose-6-phosphate iso 33.9 19 0.00066 27.4 1.9 40 42-81 195-249 (543)
103 2oxc_A Probable ATP-dependent 33.9 56 0.0019 20.6 4.0 38 42-79 64-108 (230)
104 1vec_A ATP-dependent RNA helic 33.8 56 0.0019 19.9 3.9 38 42-79 43-87 (206)
105 1o58_A O-acetylserine sulfhydr 32.8 58 0.002 22.0 4.1 42 32-73 159-207 (303)
106 3mnf_A PAC2 family protein; PS 32.5 21 0.00072 24.1 1.8 55 23-81 95-149 (250)
107 2gdl_A Myeloid antimicrobial p 31.9 0.98 3.3E-05 21.1 -3.5 12 55-66 12-23 (31)
108 1t6n_A Probable ATP-dependent 31.7 61 0.0021 20.1 3.8 38 42-79 54-98 (220)
109 2pl3_A Probable ATP-dependent 31.1 89 0.003 19.6 4.6 40 40-79 63-113 (236)
110 3ber_A Probable ATP-dependent 31.0 1.1E+02 0.0037 19.7 5.1 38 42-79 83-127 (249)
111 2aef_A Calcium-gated potassium 30.7 62 0.0021 20.5 3.8 40 39-78 70-113 (234)
112 2hqr_A Putative transcriptiona 30.5 96 0.0033 19.0 4.7 42 32-74 36-79 (223)
113 4aec_A Cysteine synthase, mito 30.4 93 0.0032 22.7 5.0 42 31-72 269-316 (430)
114 1jbq_A B, cystathionine beta-s 30.4 1E+02 0.0034 22.4 5.2 41 32-72 259-305 (435)
115 1z0s_A Probable inorganic poly 30.3 38 0.0013 23.4 2.8 32 40-71 68-99 (278)
116 2hfr_A Fowlicidin-3, cathelici 30.1 12 0.0004 16.9 0.1 8 59-66 2-9 (27)
117 4em6_D Glucose-6-phosphate iso 30.1 24 0.00082 27.0 1.9 40 42-81 204-257 (553)
118 3f6c_A Positive transcription 29.9 74 0.0025 17.5 5.4 40 35-74 41-85 (134)
119 3lua_A Response regulator rece 29.4 79 0.0027 17.7 4.4 41 34-74 43-92 (140)
120 3kto_A Response regulator rece 28.7 50 0.0017 18.6 2.8 37 38-74 48-91 (136)
121 3n0r_A Response regulator; sig 28.7 1.3E+02 0.0045 20.0 5.5 43 32-74 197-244 (286)
122 2rjn_A Response regulator rece 28.7 86 0.0029 17.9 6.0 43 32-74 43-90 (154)
123 3uhf_A Glutamate racemase; str 28.6 32 0.0011 23.6 2.2 40 31-70 77-117 (274)
124 2z3g_A Blasticidin-S deaminase 28.6 1E+02 0.0034 18.6 4.8 34 39-72 69-110 (130)
125 3c85_A Putative glutathione-re 28.5 78 0.0027 19.2 3.9 39 40-78 105-147 (183)
126 4e7p_A Response regulator; DNA 28.3 87 0.003 17.8 5.5 42 33-74 59-105 (150)
127 2rdm_A Response regulator rece 28.2 79 0.0027 17.3 6.4 41 34-74 43-90 (132)
128 3eul_A Possible nitrate/nitrit 28.2 87 0.003 17.8 5.9 40 35-74 56-100 (152)
129 4d9b_A D-cysteine desulfhydras 27.8 1.3E+02 0.0045 20.6 5.3 49 24-72 64-115 (342)
130 3hv2_A Response regulator/HD d 27.7 90 0.0031 17.8 5.1 41 34-74 52-97 (153)
131 1k8r_B Protein kinase BYR2; si 27.7 61 0.0021 19.4 3.0 31 22-52 19-49 (110)
132 3hjb_A Glucose-6-phosphate iso 27.5 27 0.00093 26.8 1.8 40 42-81 226-280 (574)
133 2q5c_A NTRC family transcripti 27.2 1.2E+02 0.0043 19.2 4.9 31 38-72 49-79 (196)
134 1tzj_A ACC deaminase, 1-aminoc 27.0 1.1E+02 0.0036 20.8 4.7 32 40-72 189-225 (338)
135 1qkk_A DCTD, C4-dicarboxylate 27.0 93 0.0032 17.7 5.0 38 37-74 44-86 (155)
136 2yv2_A Succinyl-COA synthetase 26.9 1E+02 0.0035 21.0 4.5 39 33-71 199-242 (297)
137 2z0m_A 337AA long hypothetical 26.5 78 0.0027 20.6 3.8 40 40-79 32-72 (337)
138 2gzm_A Glutamate racemase; enz 26.3 61 0.0021 21.6 3.3 37 33-69 58-95 (267)
139 1tmy_A CHEY protein, TMY; chem 26.2 83 0.0028 16.9 5.5 38 37-74 44-86 (120)
140 3pey_A ATP-dependent RNA helic 26.0 1.4E+02 0.0047 19.8 5.0 37 43-79 48-91 (395)
141 1srr_A SPO0F, sporulation resp 26.0 86 0.0029 17.0 5.5 39 36-74 43-86 (124)
142 3q9s_A DNA-binding response re 26.0 1.3E+02 0.0045 19.1 5.9 41 33-74 74-119 (249)
143 1r5t_A Cytidine deaminase; zin 25.8 1.2E+02 0.0041 18.6 5.1 33 41-73 79-120 (142)
144 3out_A Glutamate racemase; str 25.7 38 0.0013 23.0 2.1 40 31-70 60-101 (268)
145 1mzh_A Deoxyribose-phosphate a 25.7 49 0.0017 21.6 2.6 40 29-70 134-182 (225)
146 3f6p_A Transcriptional regulat 25.4 90 0.0031 17.0 5.4 42 32-74 38-84 (120)
147 3oj6_A Blasticidin-S deaminase 25.3 1.3E+02 0.0046 19.0 4.8 37 36-72 90-134 (158)
148 1gox_A (S)-2-hydroxy-acid oxid 25.2 1E+02 0.0035 21.7 4.4 38 32-69 238-286 (370)
149 1gvf_A Tagatose-bisphosphate a 25.2 88 0.003 21.7 4.0 42 26-68 28-79 (286)
150 3r0j_A Possible two component 25.1 1.3E+02 0.0046 18.9 5.7 42 33-74 60-106 (250)
151 1v8z_A Tryptophan synthase bet 25.1 1.4E+02 0.005 20.6 5.1 50 24-73 81-132 (388)
152 2zsj_A Threonine synthase; PLP 24.7 1.3E+02 0.0045 20.7 4.8 49 24-73 62-112 (352)
153 3hdg_A Uncharacterized protein 24.6 97 0.0033 17.1 5.2 39 36-74 47-90 (137)
154 3cz5_A Two-component response 24.6 1E+02 0.0036 17.5 6.4 42 33-74 44-90 (153)
155 3aey_A Threonine synthase; PLP 24.3 1.2E+02 0.0041 20.9 4.5 49 24-73 60-110 (351)
156 1zzg_A Glucose-6-phosphate iso 24.3 33 0.0011 25.1 1.6 38 43-80 119-174 (415)
157 1f2d_A 1-aminocyclopropane-1-c 24.2 1E+02 0.0035 21.1 4.1 42 31-72 178-228 (341)
158 2j0s_A ATP-dependent RNA helic 24.1 1.2E+02 0.0041 20.6 4.5 38 42-79 77-121 (410)
159 3sr7_A Isopentenyl-diphosphate 24.1 40 0.0014 24.1 2.1 21 31-51 221-241 (365)
160 1zuw_A Glutamate racemase 1; ( 24.0 76 0.0026 21.3 3.4 39 32-70 57-97 (272)
161 3b2n_A Uncharacterized protein 23.8 1E+02 0.0035 17.1 5.9 40 35-74 44-88 (133)
162 3n53_A Response regulator rece 23.7 1E+02 0.0035 17.1 5.8 41 34-74 40-87 (140)
163 3gt7_A Sensor protein; structu 23.5 1.1E+02 0.0039 17.5 6.1 43 32-74 43-92 (154)
164 3jte_A Response regulator rece 23.5 1.1E+02 0.0036 17.1 6.1 37 38-74 47-88 (143)
165 1qop_B Tryptophan synthase bet 23.4 1.6E+02 0.0056 20.6 5.2 34 40-73 222-258 (396)
166 2gxq_A Heat resistant RNA depe 23.2 1.3E+02 0.0045 18.1 5.3 38 42-79 41-88 (207)
167 1c4o_A DNA nucleotide excision 23.2 1.4E+02 0.0046 22.7 5.0 38 43-80 32-70 (664)
168 1fuu_A Yeast initiation factor 23.1 56 0.0019 21.9 2.6 38 42-79 61-105 (394)
169 3h5i_A Response regulator/sens 22.8 1.1E+02 0.0038 17.1 5.7 35 39-74 49-89 (140)
170 1id1_A Putative potassium chan 22.8 1.2E+02 0.0042 17.7 5.2 41 38-78 69-113 (153)
171 1rvg_A Fructose-1,6-bisphospha 22.8 1E+02 0.0035 21.6 3.9 40 27-68 28-77 (305)
172 2d1f_A Threonine synthase; ami 22.7 1.4E+02 0.0048 20.6 4.7 49 24-73 68-118 (360)
173 2wam_A RV2714, conserved hypot 22.6 75 0.0026 22.7 3.2 57 21-81 152-208 (351)
174 3gl9_A Response regulator; bet 22.6 1.1E+02 0.0036 16.8 5.7 41 33-73 39-86 (122)
175 2o2e_A Tryptophan synthase bet 22.5 1.3E+02 0.0043 21.6 4.5 49 25-73 113-163 (422)
176 1qop_B Tryptophan synthase bet 22.3 1.3E+02 0.0045 21.1 4.5 48 25-72 86-135 (396)
177 1s2m_A Putative ATP-dependent 22.1 1.5E+02 0.005 20.0 4.6 38 42-79 61-105 (400)
178 1q0u_A Bstdead; DEAD protein, 22.0 83 0.0028 19.5 3.1 38 42-79 44-88 (219)
179 2d30_A Cytidine deaminase; pur 21.9 1.5E+02 0.005 18.3 5.0 36 37-72 75-118 (141)
180 3pfn_A NAD kinase; structural 21.6 1.4E+02 0.0048 21.3 4.5 31 40-70 108-139 (365)
181 3cg4_A Response regulator rece 21.5 1.2E+02 0.0039 16.9 5.8 43 32-74 43-92 (142)
182 2oqr_A Sensory transduction pr 21.5 1.5E+02 0.0051 18.2 5.7 39 36-75 44-87 (230)
183 1wkv_A Cysteine synthase; homo 21.5 1.4E+02 0.0048 21.2 4.5 33 40-72 252-288 (389)
184 1hv8_A Putative ATP-dependent 21.5 1.3E+02 0.0046 19.6 4.2 36 44-79 49-90 (367)
185 2vvt_A Glutamate racemase; iso 21.3 80 0.0027 21.4 3.1 38 33-70 79-117 (290)
186 2q8n_A Glucose-6-phosphate iso 21.2 35 0.0012 25.3 1.3 30 43-72 143-184 (460)
187 1jfl_A Aspartate racemase; alp 21.0 76 0.0026 20.4 2.9 45 24-69 59-103 (228)
188 3csu_A Protein (aspartate carb 20.7 1.8E+02 0.0062 20.2 4.9 30 41-70 99-129 (310)
189 3kht_A Response regulator; PSI 20.7 1.2E+02 0.0042 16.9 6.0 42 32-73 43-91 (144)
190 3snk_A Response regulator CHEY 20.4 85 0.0029 17.4 2.7 37 38-74 57-98 (135)
191 3gve_A YFKN protein; alpha-bet 20.4 1.4E+02 0.0046 20.8 4.2 53 22-75 190-253 (341)
192 3e35_A Uncharacterized protein 20.3 73 0.0025 22.5 2.8 57 21-81 115-171 (325)
193 2gml_A Ribosomal large subunit 20.2 65 0.0022 21.7 2.4 20 40-59 56-75 (237)
194 3a10_A Response regulator; pho 20.2 1.1E+02 0.0038 16.2 6.2 42 34-75 39-85 (116)
195 1iy9_A Spermidine synthase; ro 20.1 1.3E+02 0.0045 19.9 3.9 38 40-77 76-113 (275)
196 3ia7_A CALG4; glycosysltransfe 20.1 2E+02 0.0069 19.1 6.0 41 31-72 93-133 (402)
197 2pln_A HP1043, response regula 20.0 1.2E+02 0.0043 16.7 5.0 38 35-73 57-96 (137)
No 1
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=99.84 E-value=3.5e-21 Score=145.79 Aligned_cols=83 Identities=31% Similarity=0.458 Sum_probs=78.9
Q ss_pred CCcccchHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhcccc
Q 039146 1 AEKVFNHNLFFKKVINYVGEPMSHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTNQLR 80 (84)
Q Consensus 1 aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r~L~ 80 (84)
+|+.++|+.+|+.+....+.+.+..++||.+++.+|.++++++||++|.||+||+++|||||.+||||+|++++++|+|+
T Consensus 385 aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~sG~tA~~iSr~RP~~pI~a~T~~~~~~r~l~ 464 (526)
T 4drs_A 385 AETCIDYPVLYHAIHSSVPKPVAVPEAIACSAVESAHDVNAKLIITITETGNTARLISKYRPSQTIIACTAKPEVARGLK 464 (526)
T ss_dssp HHTTCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHHHHHHTCCSSEEEEEESCHHHHHHGG
T ss_pred HhhcccchhhhhhhhhccCCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHhhh
Confidence 48889999999888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 039146 81 WTF 83 (84)
Q Consensus 81 l~~ 83 (84)
|.+
T Consensus 465 L~w 467 (526)
T 4drs_A 465 IAR 467 (526)
T ss_dssp GST
T ss_pred ccC
Confidence 976
No 2
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=99.84 E-value=5.1e-21 Score=144.18 Aligned_cols=83 Identities=37% Similarity=0.562 Sum_probs=76.0
Q ss_pred CCcccchHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhcccc
Q 039146 1 AEKVFNHNLFFKKVINYVGEPMSHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTNQLR 80 (84)
Q Consensus 1 aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r~L~ 80 (84)
+|+.++|...|.......+.+.+..++||.+++.+|.++++++||++|.||+||+++|||||.+||||+|++++++|||+
T Consensus 354 aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~tA~~isr~RP~~pIia~T~~~~~~r~l~ 433 (499)
T 3hqn_D 354 AQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLN 433 (499)
T ss_dssp HHHHCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHHHHTCSEEEEECSSSHHHHHHHHTCCSSCEEEEESCHHHHHHGG
T ss_pred HHhcchhHHHHhhhhhccCCCCCHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHHHHhh
Confidence 47778888888777766666678999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 039146 81 WTF 83 (84)
Q Consensus 81 l~~ 83 (84)
|.+
T Consensus 434 L~~ 436 (499)
T 3hqn_D 434 ITQ 436 (499)
T ss_dssp GST
T ss_pred ccC
Confidence 975
No 3
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=99.83 E-value=7.1e-21 Score=144.61 Aligned_cols=83 Identities=28% Similarity=0.380 Sum_probs=76.2
Q ss_pred CCcccchHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhcccc
Q 039146 1 AEKVFNHNLFFKKVINYVGEPMSHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTNQLR 80 (84)
Q Consensus 1 aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r~L~ 80 (84)
+|+.++|..+|..+....+.+.+..++||.+++.+|.++++++||++|.||+||+++|||||.+||||+|+++.++|||+
T Consensus 404 aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~TA~~iSr~RP~~PIia~T~~~~~aR~l~ 483 (550)
T 3gr4_A 404 AEAAIYHLQLFEELRRLAPITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTARQAH 483 (550)
T ss_dssp HHHTSCHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHTTCSCEEEECSSSHHHHHHHTTCCSSCEEEEESCHHHHHHGG
T ss_pred HhhcchhHHHHHhhhhccCCCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHHHHHh
Confidence 47778888888777666666778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 039146 81 WTF 83 (84)
Q Consensus 81 l~~ 83 (84)
|.+
T Consensus 484 L~~ 486 (550)
T 3gr4_A 484 LYR 486 (550)
T ss_dssp GST
T ss_pred ccC
Confidence 975
No 4
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=99.83 E-value=9.9e-21 Score=143.10 Aligned_cols=83 Identities=33% Similarity=0.511 Sum_probs=75.9
Q ss_pred CCcccchHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhcccc
Q 039146 1 AEKVFNHNLFFKKVINYVGEPMSHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTNQLR 80 (84)
Q Consensus 1 aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r~L~ 80 (84)
+|+.++|...|+......+.+.+..++||.+++.+|.++++++||++|.||+||+++|||||.+||||+|++++++|||+
T Consensus 379 aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~TA~~vSr~RP~~PIia~T~~~~~~r~l~ 458 (520)
T 3khd_A 379 AEACIDYKLLYQSLVNAIETPISVQEAVARSAVETAESIQASLIIALTETGYTARLIAKYKPSCTILALSASDSTVKCLN 458 (520)
T ss_dssp HHTTCCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHHHHHHTCCSSEEEEEESCHHHHHHGG
T ss_pred HHhhhhhhhhHhhhhhccCCCCCHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhcCCCCCEEEEcCCHHHHHHHh
Confidence 47788888888777666666678999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 039146 81 WTF 83 (84)
Q Consensus 81 l~~ 83 (84)
|.+
T Consensus 459 L~~ 461 (520)
T 3khd_A 459 VHR 461 (520)
T ss_dssp GST
T ss_pred ccC
Confidence 975
No 5
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=99.83 E-value=1.5e-20 Score=141.85 Aligned_cols=83 Identities=31% Similarity=0.479 Sum_probs=75.1
Q ss_pred CCcccchHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhcccc
Q 039146 1 AEKVFNHNLFFKKVINYVGEPMSHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTNQLR 80 (84)
Q Consensus 1 aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r~L~ 80 (84)
+|+.++|...|+........+.+..++||.+++.+|.++++++||++|.||+||+++|||||.+||||+|+++.++|+|+
T Consensus 370 aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~tA~~iSr~RP~~PIia~T~~~~~~r~l~ 449 (511)
T 3gg8_A 370 AETCVDYPALYRAMCLAVPPPISTQEAVARAAVETAECVNAAIILALTETGQTARLIAKYRPMQPILALSASESTIKHLQ 449 (511)
T ss_dssp HHTTCCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSHHHHHHHHTCCSSCEEEEESCHHHHHHGG
T ss_pred HHhchhHHHHHhhhhhcccCCCCHHHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCCEEEEcCCHHHHHHhh
Confidence 47778888777766655555678899999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 039146 81 WTF 83 (84)
Q Consensus 81 l~~ 83 (84)
|.+
T Consensus 450 L~~ 452 (511)
T 3gg8_A 450 VIR 452 (511)
T ss_dssp GST
T ss_pred ccC
Confidence 975
No 6
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=99.81 E-value=4.5e-20 Score=139.14 Aligned_cols=83 Identities=29% Similarity=0.389 Sum_probs=71.2
Q ss_pred CCcccchHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhcccc
Q 039146 1 AEKVFNHNLFFKKVINYVGEPMSHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTNQLR 80 (84)
Q Consensus 1 aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r~L~ 80 (84)
+|+.++|...|.......+.+.+..++||.+++.+|.++++++||++|.||+||+++|||||.+||||+|+++.++|||+
T Consensus 355 aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~a~~~~a~aIv~~T~sG~ta~~isr~RP~~pI~a~t~~~~~~r~l~ 434 (500)
T 1a3w_A 355 AEQAIAYLPNYDDMRNCTPKPTSTTETVAASAVAAVFEQKAKAIIVLSTSGTTPRLVSKYRPNCPIILVTRCPRAARFSH 434 (500)
T ss_dssp HTTSCCHHHHHHHHTTSCCSSCCHHHHHHHHHHHHHHHHTCSCEEEECSSSHHHHHHHHTCCSSCEEEEESCTTHHHHGG
T ss_pred hhhhhhhhhHHHhhhhccccccchHHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCCEEEEcCCHHHHHhhh
Confidence 47777777666554321232346789999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 039146 81 WTF 83 (84)
Q Consensus 81 l~~ 83 (84)
|.+
T Consensus 435 l~~ 437 (500)
T 1a3w_A 435 LYR 437 (500)
T ss_dssp GST
T ss_pred hhC
Confidence 975
No 7
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=99.78 E-value=2.4e-19 Score=137.52 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=71.4
Q ss_pred CCcccchHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhcccc
Q 039146 1 AEKVFNHNLFFKKVINYVGEPMSHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTNQLR 80 (84)
Q Consensus 1 aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r~L~ 80 (84)
+|+.++|...|+..... .+.+..+++|.+++.+|.++++++||++|.||+||+++|||||++||||+|++++++|||+
T Consensus 355 aE~~~~~~~~~~~~~~~--~~~~~~~aia~aa~~~a~~l~a~aIv~~T~sG~ta~~isr~RP~~pIia~t~~~~~~r~l~ 432 (606)
T 3t05_A 355 AEAAQDYKKLLSDRTKL--VETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCS 432 (606)
T ss_dssp HHHTSCHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSHHHHHHHHTCCSSEEEEEESCHHHHHHHH
T ss_pred HHhhhhhHhhhhhhccc--cCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHhhCCCCCEEEEcCCHHHHHhhh
Confidence 46777887776655332 2457899999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 039146 81 WTF 83 (84)
Q Consensus 81 l~~ 83 (84)
|.+
T Consensus 433 L~~ 435 (606)
T 3t05_A 433 IVW 435 (606)
T ss_dssp TSS
T ss_pred ccC
Confidence 975
No 8
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=99.77 E-value=7.8e-19 Score=134.39 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=68.3
Q ss_pred CCcccchHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhcccc
Q 039146 1 AEKVFNHNLFFKKVINYVGEPMSHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTNQLR 80 (84)
Q Consensus 1 aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r~L~ 80 (84)
+|+.++|...+..... ..+.+..++|+++++.+|.++++++||++|.||+||+++|||||.+||||+|++++++|+|+
T Consensus 336 ~E~~~~~~~~~~~~~~--~~~~~~~~aia~aa~~~a~~~~a~aIv~~T~sG~ta~~isr~Rp~~pI~a~t~~~~~~r~l~ 413 (587)
T 2e28_A 336 TEQALEHRDILSQRTK--ESQTTITDAIGQSVAHTALNLDVAAIVTPTVSGKTPQMVAKYRPKAPIIAVTSNEAVSRRLA 413 (587)
T ss_dssp HHTTCCHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHHHHHHTCCSSCEEEEESSHHHHHHGG
T ss_pred HhhhhhhhhHhhhhhc--ccccchHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhcCCCCCEEEECCCHHHHHHHH
Confidence 3666666544443321 22246789999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 039146 81 WTF 83 (84)
Q Consensus 81 l~~ 83 (84)
|.+
T Consensus 414 l~~ 416 (587)
T 2e28_A 414 LVW 416 (587)
T ss_dssp GST
T ss_pred Hhc
Confidence 975
No 9
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=99.76 E-value=3e-19 Score=133.85 Aligned_cols=61 Identities=28% Similarity=0.395 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhccccccc
Q 039146 23 SHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTNQLRWTF 83 (84)
Q Consensus 23 ~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r~L~l~~ 83 (84)
+..++|+.+++.+|.++++++||++|.||+||+++|||||.+||||+|++++++|+|+|.+
T Consensus 353 ~~~~aia~aa~~~a~~l~a~aIv~~T~sG~ta~~isr~RP~~pI~a~t~~~~~~r~l~l~~ 413 (470)
T 1e0t_A 353 RITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSK 413 (470)
T ss_dssp -CHHHHHHHHHHHHHHTTCSBEEEECSSSHHHHHHHTTCCSSBEEEEESCHHHHHHGGGST
T ss_pred chHHHHHHHHHHHHHhcCCCEEEEECCChhHHHHHHhhCCCCCEEEECCCHHHHHHhhhhc
Confidence 5689999999999999999999999999999999999999999999999999999999975
No 10
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=99.74 E-value=3e-18 Score=128.10 Aligned_cols=63 Identities=25% Similarity=0.251 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhccccccc
Q 039146 20 EPMSHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTNQLRWTF 83 (84)
Q Consensus 20 ~~~~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r~L~l~~ 83 (84)
.+.+..+++|.+++.+|.+++++ ||++|.||+||+++|||||.+||||+|++++++|||+|.+
T Consensus 354 ~~~~~~~aia~aa~~~a~~~~a~-Iv~~T~SG~tA~~vsr~RP~~pIia~T~~~~~~r~l~l~~ 416 (461)
T 3qtg_A 354 LLQNSRDRFAKGLVELAQDLGAN-ILVFSMSGTLARRIAKFRPRGVVYVGTPNVRVARSLSIVW 416 (461)
T ss_dssp CCCSHHHHHHHHHHHHHHHHTCE-EEEECSSSHHHHHHHTTCCSSCEEEEESCHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHHHHhcCCC-EEEECCCcHHHHHHHhhCCCCCEEEeCCCHHHHhhceecc
Confidence 34678999999999999999999 9999999999999999999999999999999999999975
No 11
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=96.43 E-value=0.011 Score=39.90 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEec
Q 039146 23 SHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVI 71 (84)
Q Consensus 23 ~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~ 71 (84)
..++.....+.+-|.+++.+.||+.|.+|.||+.+...-....+++||.
T Consensus 26 eNT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~~~i~lVvVTh 74 (201)
T 1vp8_A 26 ENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTY 74 (201)
T ss_dssp GGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCTTCEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHhcCCeEEEEeC
Confidence 3477777888899999999999999999999998888767788999984
No 12
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=96.06 E-value=0.019 Score=38.95 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEec
Q 039146 23 SHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVI 71 (84)
Q Consensus 23 ~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~ 71 (84)
..++.....+.+-|.+++.+.||+.|.+|.||+.+...-.+ .+++||.
T Consensus 34 eNT~~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~~-~lVvVTh 81 (206)
T 1t57_A 34 ENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVEG-NIVSVTH 81 (206)
T ss_dssp GGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCCS-EEEEECC
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHccC-CEEEEeC
Confidence 34777778889999999999999999999999998885544 7888874
No 13
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=88.91 E-value=1.3 Score=26.11 Aligned_cols=42 Identities=26% Similarity=0.266 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC---------chHHHHHHhhCCCCCEEEE
Q 039146 27 SITSSAVRSAIKVKASAIICFTSS---------GRAARLIAKYRPTMPVLSV 69 (84)
Q Consensus 27 ~ia~~a~~~a~~~~~~aIv~~T~s---------G~ta~~iS~~Rp~~pIia~ 69 (84)
..+...++.+.+.+++.||+-++. |.++..+.+.-| |||+.+
T Consensus 97 ~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~-~pVlvV 147 (147)
T 3hgm_A 97 RPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAH-CPVLVV 147 (147)
T ss_dssp CHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCS-SCEEEC
T ss_pred CHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCC-CCEEEC
Confidence 455667778889999999987753 778888888765 998864
No 14
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=87.80 E-value=2.5 Score=24.78 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC---------chHHHHHHhhCCCCCEEEE
Q 039146 27 SITSSAVRSAIKVKASAIICFTSS---------GRAARLIAKYRPTMPVLSV 69 (84)
Q Consensus 27 ~ia~~a~~~a~~~~~~aIv~~T~s---------G~ta~~iS~~Rp~~pIia~ 69 (84)
..+...++.+.+.+++.||+-++. |.++..+.+.- +|||+.+
T Consensus 86 ~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~-~~pVlvv 136 (137)
T 2z08_A 86 VPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEA-PCPVLLV 136 (137)
T ss_dssp SHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHC-SSCEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcC-CCCEEEe
Confidence 356667788899999999998763 67888888774 6999876
No 15
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=87.18 E-value=2.1 Score=25.42 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC--------chHHHHHHhhCCCCCEEEEecC
Q 039146 27 SITSSAVRSAIKVKASAIICFTSS--------GRAARLIAKYRPTMPVLSVVIP 72 (84)
Q Consensus 27 ~ia~~a~~~a~~~~~~aIv~~T~s--------G~ta~~iS~~Rp~~pIia~t~~ 72 (84)
..+...++.+.+.+++.||+-++. |.++..+.+.= .|||+.+-++
T Consensus 96 ~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~-~~pVlvv~~~ 148 (150)
T 3tnj_A 96 EPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYA-KCDVLAVRLR 148 (150)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHC-SSEEEEEECC
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhC-CCCEEEEeCC
Confidence 445667788899999999988753 66788887765 4999988443
No 16
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=85.66 E-value=3.6 Score=24.69 Aligned_cols=42 Identities=24% Similarity=0.173 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEecC---------CchHHHHHHhhCCCCCEEEE
Q 039146 27 SITSSAVRSAIKVKASAIICFTS---------SGRAARLIAKYRPTMPVLSV 69 (84)
Q Consensus 27 ~ia~~a~~~a~~~~~~aIv~~T~---------sG~ta~~iS~~Rp~~pIia~ 69 (84)
..+...++.+.+.+++.||+-++ -|.++..+.+.- +|||+.+
T Consensus 107 ~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~-~~pVlvv 157 (162)
T 1mjh_A 107 IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKS-NKPVLVV 157 (162)
T ss_dssp CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHC-CSCEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhC-CCCEEEE
Confidence 35566778889999999999876 367888888875 6999988
No 17
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=83.94 E-value=2.7 Score=25.57 Aligned_cols=42 Identities=26% Similarity=0.203 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEecC---------CchHHHHHHhhCCCCCEEEE
Q 039146 27 SITSSAVRSAIKVKASAIICFTS---------SGRAARLIAKYRPTMPVLSV 69 (84)
Q Consensus 27 ~ia~~a~~~a~~~~~~aIv~~T~---------sG~ta~~iS~~Rp~~pIia~ 69 (84)
..+....+.|.+.+++.||+-+. -|.++..+.+.- .|||+.+
T Consensus 104 ~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a-~~PVLvV 154 (155)
T 3dlo_A 104 EPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKA-NKPVICI 154 (155)
T ss_dssp CHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHC-SSCEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhC-CCCEEEe
Confidence 45667778889999999998774 377888888854 6999876
No 18
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=83.09 E-value=5.7 Score=24.04 Aligned_cols=45 Identities=20% Similarity=0.107 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEecC---------CchHHHHHHhhCCCCCEEEEecC
Q 039146 27 SITSSAVRSAIKVKASAIICFTS---------SGRAARLIAKYRPTMPVLSVVIP 72 (84)
Q Consensus 27 ~ia~~a~~~a~~~~~~aIv~~T~---------sG~ta~~iS~~Rp~~pIia~t~~ 72 (84)
..+...++.+.+.+++.||+-++ -|.++..+.+.- .|||+.+-+.
T Consensus 104 ~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~-~~PVlvv~~~ 157 (170)
T 2dum_A 104 IPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKT-KKPVLIIKEV 157 (170)
T ss_dssp CHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHC-SSCEEEECCC
T ss_pred ChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhC-CCCEEEEccC
Confidence 35667778899999999999875 256777888775 5999998433
No 19
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=82.18 E-value=4.7 Score=23.58 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=32.1
Q ss_pred HHHHHHHH-HHHhcCCcEEEEecC---------CchHHHHHHhhCCCCCEEEE
Q 039146 27 SITSSAVR-SAIKVKASAIICFTS---------SGRAARLIAKYRPTMPVLSV 69 (84)
Q Consensus 27 ~ia~~a~~-~a~~~~~~aIv~~T~---------sG~ta~~iS~~Rp~~pIia~ 69 (84)
..+...++ .+++.+++.||+-++ -|.++..+.+.-| |||+.+
T Consensus 94 ~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~-~pVlvV 145 (146)
T 3s3t_A 94 IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAP-CNVIVI 145 (146)
T ss_dssp CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCS-SEEEEE
T ss_pred ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCC-CCEEEe
Confidence 35566677 788899999998774 3678888887764 999876
No 20
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=82.05 E-value=5.1 Score=24.51 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCcEEEEecC---------CchHHHHHHhhCCCCCEEEEec
Q 039146 28 ITSSAVRSAIKVKASAIICFTS---------SGRAARLIAKYRPTMPVLSVVI 71 (84)
Q Consensus 28 ia~~a~~~a~~~~~~aIv~~T~---------sG~ta~~iS~~Rp~~pIia~t~ 71 (84)
.+...++.|.+.+++.||+-++ -|.++..+.+.- +|||+.+-+
T Consensus 107 ~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a-~~PVlvV~~ 158 (163)
T 1tq8_A 107 PVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRA-KVDVLIVHT 158 (163)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHT-TCEEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhC-CCCEEEEeC
Confidence 4666778888999999999876 256777777765 599999843
No 21
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=81.84 E-value=5.5 Score=23.21 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEecC--------CchHHHHHHhhCCCCCEEEE
Q 039146 27 SITSSAVRSAIKVKASAIICFTS--------SGRAARLIAKYRPTMPVLSV 69 (84)
Q Consensus 27 ~ia~~a~~~a~~~~~~aIv~~T~--------sG~ta~~iS~~Rp~~pIia~ 69 (84)
..+....+.+.+.+++.||+-++ -|.++..+.+.- +|||+.+
T Consensus 93 ~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~~-~~pVlvv 142 (143)
T 3fdx_A 93 SPKDKILALAKSLPADLVIIASHRPDITTYLLGSNAAAVVRHA-ECSVLVV 142 (143)
T ss_dssp CHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSCHHHHHHHHHC-SSEEEEE
T ss_pred ChHHHHHHHHHHhCCCEEEEeCCCCCCeeeeeccHHHHHHHhC-CCCEEEe
Confidence 45667778899999999999875 367788888754 5999876
No 22
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=81.62 E-value=2.5 Score=24.73 Aligned_cols=41 Identities=5% Similarity=-0.081 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEE
Q 039146 28 ITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSV 69 (84)
Q Consensus 28 ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~ 69 (84)
.+...++.+.+.+++.||+-++.-.++..+.+.=| |||+.+
T Consensus 97 ~~~~I~~~a~~~~~dliV~G~~g~sv~~~vl~~a~-~PVlvv 137 (138)
T 1q77_A 97 LSEEVKKFVEGKGYELVVWACYPSAYLCKVIDGLN-LASLIV 137 (138)
T ss_dssp HHHHHHHHHTTSCCSEEEECSCCGGGTHHHHHHSS-SEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHhCC-CceEee
Confidence 55566778888899988887664367777776654 898865
No 23
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=81.56 E-value=1.1 Score=32.53 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=28.1
Q ss_pred hcCCcEEEEecCCchHHHHHHhh----CCCCCEEEEec
Q 039146 38 KVKASAIICFTSSGRAARLIAKY----RPTMPVLSVVI 71 (84)
Q Consensus 38 ~~~~~aIv~~T~sG~ta~~iS~~----Rp~~pIia~t~ 71 (84)
...++.+|+-|.+|.||.-+|.= .|..+.|.+|+
T Consensus 244 ~~~aDGlIVSTPTGSTAYslSAGGPIv~P~~~~i~ltP 281 (365)
T 3pfn_A 244 TVQGDGVIVSTPTGSTAYAAAAGASMIHPNVPAIMITP 281 (365)
T ss_dssp EECSSEEEEECGGGGGTHHHHTTCCEECTTSCCEEEEE
T ss_pred EEecCeEEEeCCccHHHHHHhCCCCccCCCCCeEEEEe
Confidence 34689999999999999999975 77777777764
No 24
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=80.79 E-value=2.2 Score=26.57 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=25.9
Q ss_pred CCcEEEEecCCchHHHHH-----HhhCCCCCEEEEecChh
Q 039146 40 KASAIICFTSSGRAARLI-----AKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~i-----S~~Rp~~pIia~t~~~~ 74 (84)
+-+.+|++|.||+|...+ +|-+ .+++|++|.+..
T Consensus 96 ~~d~vI~iS~sG~t~~~~~~~~~ak~~-g~~vi~IT~~~~ 134 (183)
T 2xhz_A 96 PQDVVIAISNSGESSEITALIPVLKRL-HVPLICITGRPE 134 (183)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHTT-TCCEEEEESCTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence 347899999999987644 4444 789999998653
No 25
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=79.76 E-value=4.2 Score=24.30 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=31.5
Q ss_pred HHHHHHHHH-HHhcCCcEEEEecCC--------chHHHHHHhhCCCCCEEEE
Q 039146 27 SITSSAVRS-AIKVKASAIICFTSS--------GRAARLIAKYRPTMPVLSV 69 (84)
Q Consensus 27 ~ia~~a~~~-a~~~~~~aIv~~T~s--------G~ta~~iS~~Rp~~pIia~ 69 (84)
..+...+.. +++.+++.||+-++. |.++..+.+.- +|||+.+
T Consensus 105 ~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~vl~~a-~~PVlvV 155 (156)
T 3fg9_A 105 DVDDVILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKA-PISVIVV 155 (156)
T ss_dssp CHHHHHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHC-SSEEEEE
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCccceeecchHHHHHHhC-CCCEEEe
Confidence 455566676 788899999988762 67888888765 5898876
No 26
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=79.15 E-value=8.1 Score=23.48 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC---------chHHHHHHhhCCCCCEEEEecCh
Q 039146 28 ITSSAVRSAIKVKASAIICFTSS---------GRAARLIAKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 28 ia~~a~~~a~~~~~~aIv~~T~s---------G~ta~~iS~~Rp~~pIia~t~~~ 73 (84)
.+...+..+.+.+++.||+-+.. |.++..+.+.- .|||+.+-.+.
T Consensus 112 ~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a-~~pVlvv~~~~ 165 (175)
T 2gm3_A 112 PKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHA-ECPVMTIKRNA 165 (175)
T ss_dssp HHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHC-SSCEEEEECCG
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCC-CCCEEEEcCCc
Confidence 45566778888899999998752 56777777775 59999985543
No 27
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=78.52 E-value=2.8 Score=26.16 Aligned_cols=34 Identities=12% Similarity=0.069 Sum_probs=26.0
Q ss_pred CCcEEEEecCCchHHHH-----HHhhCCCCCEEEEecChh
Q 039146 40 KASAIICFTSSGRAARL-----IAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~-----iS~~Rp~~pIia~t~~~~ 74 (84)
+-+.+|++|.||+|... .+|-| .++||++|.++.
T Consensus 87 ~~d~~i~iS~sG~t~~~~~~~~~ak~~-g~~vi~IT~~~~ 125 (187)
T 3sho_A 87 PTDLMIGVSVWRYLRDTVAALAGAAER-GVPTMALTDSSV 125 (187)
T ss_dssp TTEEEEEECCSSCCHHHHHHHHHHHHT-TCCEEEEESCTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence 45789999999998763 35555 799999997643
No 28
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=76.95 E-value=2.8 Score=26.22 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=24.2
Q ss_pred CcEEEEecCCchHHHH-----HHhhCCCCCEEEEecCh
Q 039146 41 ASAIICFTSSGRAARL-----IAKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 41 ~~aIv~~T~sG~ta~~-----iS~~Rp~~pIia~t~~~ 73 (84)
-+.+|++|.||.|... .+|-| .++||++|.++
T Consensus 80 ~d~vI~iS~sG~t~~~~~~~~~ak~~-g~~vi~IT~~~ 116 (186)
T 1m3s_A 80 GDLVIIGSGSGETKSLIHTAAKAKSL-HGIVAALTINP 116 (186)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHT-TCEEEEEESCT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHC-CCEEEEEECCC
Confidence 3678999999988543 44555 68999999865
No 29
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=76.44 E-value=8.9 Score=22.23 Aligned_cols=44 Identities=7% Similarity=0.060 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC------chHHHHHHhhCCCCCEEEEec
Q 039146 27 SITSSAVRSAIKVKASAIICFTSS------GRAARLIAKYRPTMPVLSVVI 71 (84)
Q Consensus 27 ~ia~~a~~~a~~~~~~aIv~~T~s------G~ta~~iS~~Rp~~pIia~t~ 71 (84)
..+...++.+.+.+++.||+-++. |.++..+.+.= +|||+.+-+
T Consensus 89 ~~~~~I~~~a~~~~~dliV~G~~~~~~~~lgs~~~~vl~~~-~~pVlvv~~ 138 (141)
T 1jmv_A 89 DLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTI-KIDMLVVPL 138 (141)
T ss_dssp CHHHHHHHHHHHTTCCEEEEEECCCCHHHHHHHHHHHHTTC-CSEEEEEEC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCchhhhhcchHHHHHhcC-CCCEEEeeC
Confidence 356667788899999999998762 34566666554 599998843
No 30
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=76.30 E-value=4.7 Score=23.42 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC--------chHHHHHHhhCCCCCEEEE
Q 039146 28 ITSSAVRSAIKVKASAIICFTSS--------GRAARLIAKYRPTMPVLSV 69 (84)
Q Consensus 28 ia~~a~~~a~~~~~~aIv~~T~s--------G~ta~~iS~~Rp~~pIia~ 69 (84)
.+....+.+. +++.||+-++. |.++..+.+.= .|||+.+
T Consensus 91 ~~~~I~~~a~--~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~-~~pVlvv 137 (138)
T 3idf_A 91 PVEMVLEEAK--DYNLLIIGSSENSFLNKIFASHQDDFIQKA-PIPVLIV 137 (138)
T ss_dssp HHHHHHHHHT--TCSEEEEECCTTSTTSSCCCCTTCHHHHHC-SSCEEEE
T ss_pred hHHHHHHHHh--cCCEEEEeCCCcchHHHHhCcHHHHHHhcC-CCCEEEe
Confidence 4445555565 88988887753 67777777765 4898875
No 31
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=76.15 E-value=1.9 Score=31.31 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=26.1
Q ss_pred cCCcEEEEecCCchHHHHHHh----hCCCCCEEEEec
Q 039146 39 VKASAIICFTSSGRAARLIAK----YRPTMPVLSVVI 71 (84)
Q Consensus 39 ~~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~ 71 (84)
..++.||+-|.+|.||.-+|. ..|..+.+.+++
T Consensus 227 ~~~DGliVsTPTGSTAYslSAGGpIv~P~~~~~~ltP 263 (388)
T 3afo_A 227 TTADGVALATPTGSTAYSLSAGGSIVSPLVPAILMTP 263 (388)
T ss_dssp EEEEEEEEECTGGGGTHHHHTTCCEECTTSCEEEEEE
T ss_pred ecCCeEEEeCCCcHHHHHHhccCCcccCCCCceEEee
Confidence 457899999999999999997 456666666653
No 32
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=72.10 E-value=3.6 Score=25.63 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=25.9
Q ss_pred CCcEEEEecCCchHHHH-----HHhhCCCCCEEEEecChh
Q 039146 40 KASAIICFTSSGRAARL-----IAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~-----iS~~Rp~~pIia~t~~~~ 74 (84)
+-+.+|++|.||+|... .+|-| .+++|++|.++.
T Consensus 110 ~~Dvvi~iS~sG~t~~~~~~~~~ak~~-g~~vi~iT~~~~ 148 (188)
T 1tk9_A 110 EKDVLIGISTSGKSPNVLEALKKAKEL-NMLCLGLSGKGG 148 (188)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHT-TCEEEEEEEGGG
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 45789999999998754 35555 789999987643
No 33
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=71.44 E-value=4.3 Score=25.53 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=25.4
Q ss_pred CCcEEEEecCCchHHHH-----HHhhCCCCCEEEEecChh
Q 039146 40 KASAIICFTSSGRAARL-----IAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~-----iS~~Rp~~pIia~t~~~~ 74 (84)
+-+.+|++|.||+|... .+|-| .++||++|.++.
T Consensus 109 ~~DvvI~iS~SG~t~~~i~~~~~ak~~-g~~vI~IT~~~~ 147 (196)
T 2yva_A 109 AGDVLLAISTRGNSRDIVKAVEAAVTR-DMTIVALTGYDG 147 (196)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHT-TCEEEEEECTTC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 44788999999998754 34444 789999998653
No 34
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Probab=71.39 E-value=5.6 Score=27.23 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=25.2
Q ss_pred CcEEEEecCCchHHHHH-----HhhCCCCCEEEEecCh
Q 039146 41 ASAIICFTSSGRAARLI-----AKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 41 ~~aIv~~T~sG~ta~~i-----S~~Rp~~pIia~t~~~ 73 (84)
-+.+|++|.||.|+-.+ +|-+ .+++|++|.+.
T Consensus 80 ~dlvI~iS~SG~T~e~~~a~~~ak~~-g~~~iaIT~~~ 116 (302)
T 1tzb_A 80 DGLLIAVSYSGNTIETLYTVEYAKRR-RIPAVAITTGG 116 (302)
T ss_dssp SSEEEEECSSSCCHHHHHHHHHHHHT-TCCEEEEESST
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHC-CCeEEEECCCc
Confidence 46789999999987543 4444 78999999887
No 35
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 2.35A {Clostridium novyi}
Probab=71.06 E-value=2.2 Score=30.79 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=26.4
Q ss_pred CcEEEEecCCchHHHHH-----HhhC-CCCCEEEEecChh
Q 039146 41 ASAIICFTSSGRAARLI-----AKYR-PTMPVLSVVIPQL 74 (84)
Q Consensus 41 ~~aIv~~T~sG~ta~~i-----S~~R-p~~pIia~t~~~~ 74 (84)
-+.+|++|.||.|+-.+ +|-+ +.+++|++|.++.
T Consensus 109 ~dlvI~iS~SGeT~e~l~al~~ak~~~~Ga~~iaIT~~~~ 148 (393)
T 3odp_A 109 PTLLISCARSGNSPESTAAVTLAEKIVDDISHLIITCNSE 148 (393)
T ss_dssp CEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhhcCCCcEEEEECCCC
Confidence 36789999999998754 5554 5799999998643
No 36
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=70.91 E-value=4.5 Score=25.57 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=24.9
Q ss_pred CCcEEEEecCCchHHHH-----HHhhCCCCCEEEEecCh
Q 039146 40 KASAIICFTSSGRAARL-----IAKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~-----iS~~Rp~~pIia~t~~~ 73 (84)
+-+.+|++|.||+|... .+|-| .++||++|.++
T Consensus 113 ~~DvvI~iS~SG~t~~~i~~~~~ak~~-g~~vI~IT~~~ 150 (199)
T 1x92_A 113 PGDVLLAISTSGNSANVIQAIQAAHDR-EMLVVALTGRD 150 (199)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHT-TCEEEEEECTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCEEEEEECCC
Confidence 44788999999998753 34444 78999998865
No 37
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=70.36 E-value=4.5 Score=25.40 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=25.1
Q ss_pred CCcEEEEecCCchHHHH-----HHhhCCCCCEEEEecCh
Q 039146 40 KASAIICFTSSGRAARL-----IAKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~-----iS~~Rp~~pIia~t~~~ 73 (84)
+-+.+|++|.||+|... .+|-| .++||++|.++
T Consensus 116 ~~d~vI~iS~SG~t~~~~~~~~~ak~~-g~~vI~IT~~~ 153 (198)
T 2xbl_A 116 EGDVLIGYSTSGKSPNILAAFREAKAK-GMTCVGFTGNR 153 (198)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHT-TCEEEEEECSC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 45789999999988654 34555 78999999764
No 38
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=68.47 E-value=5.6 Score=25.96 Aligned_cols=35 Identities=11% Similarity=0.301 Sum_probs=25.1
Q ss_pred CCcEEEEecCCchHHHHH-----Hhh-CCCCCEEEEecChh
Q 039146 40 KASAIICFTSSGRAARLI-----AKY-RPTMPVLSVVIPQL 74 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~i-----S~~-Rp~~pIia~t~~~~ 74 (84)
+-+.+|++|.||.|...+ +|- +-.++||++|.+..
T Consensus 106 ~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~ 146 (220)
T 3etn_A 106 ENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPD 146 (220)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCC
Confidence 346889999999986643 443 14899999997643
No 39
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=67.96 E-value=6.2 Score=24.44 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=24.8
Q ss_pred CcEEEEecCCchHHHHH-----HhhCCCCCEEEEecChh
Q 039146 41 ASAIICFTSSGRAARLI-----AKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 41 ~~aIv~~T~sG~ta~~i-----S~~Rp~~pIia~t~~~~ 74 (84)
-+.+|++|.||.+...+ +|-| .++||++|.+..
T Consensus 83 ~d~vi~iS~sG~t~~~~~~~~~ak~~-g~~vi~IT~~~~ 120 (180)
T 1jeo_A 83 DDLLILISGSGRTESVLTVAKKAKNI-NNNIIAIVCECG 120 (180)
T ss_dssp TCEEEEEESSSCCHHHHHHHHHHHTT-CSCEEEEESSCC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence 37789999999986543 4444 799999998653
No 40
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=66.96 E-value=4.6 Score=25.61 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=25.3
Q ss_pred CCcEEEEecCCchHHHHH-----HhhCCCCCEEEEecChh
Q 039146 40 KASAIICFTSSGRAARLI-----AKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~i-----S~~Rp~~pIia~t~~~~ 74 (84)
+-+.+|++|.||.|...+ +|-| .++||++|.++.
T Consensus 92 ~~dvvI~iS~sG~t~~~~~~~~~ak~~-g~~vi~IT~~~~ 130 (201)
T 3fxa_A 92 KEDILILISKGGNTGELLNLIPACKTK-GSTLIGVTENPD 130 (201)
T ss_dssp TTCEEEEECSSSCCHHHHTTHHHHHHH-TCEEEEEESCTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHc-CCeEEEEECCCC
Confidence 347889999999987643 4444 799999997643
No 41
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=65.87 E-value=5.3 Score=28.12 Aligned_cols=34 Identities=9% Similarity=0.110 Sum_probs=25.9
Q ss_pred CCcEEEEecCCchHHH-----HHHhhCCCCCEEEEecChh
Q 039146 40 KASAIICFTSSGRAAR-----LIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~-----~iS~~Rp~~pIia~t~~~~ 74 (84)
+-+.+|++|.||.|+- ..+|-+ .+++|++|.++.
T Consensus 82 ~~dlvI~iS~SG~T~e~l~a~~~ak~~-ga~~iaIT~~~~ 120 (352)
T 3g68_A 82 ENTLVVGVSQGGSSYSTYNAMKLAEDK-GCKIASMAGCKN 120 (352)
T ss_dssp TTEEEEEEESSSCCHHHHHHHHHHHHT-TCEEEEEESSTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence 3468899999999865 455555 799999997543
No 42
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=65.86 E-value=3.8 Score=26.26 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=24.6
Q ss_pred CcEEEEecCCchHHHH-----HHhhCCCCCEEEEecChh
Q 039146 41 ASAIICFTSSGRAARL-----IAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 41 ~~aIv~~T~sG~ta~~-----iS~~Rp~~pIia~t~~~~ 74 (84)
-+.+|++|.||+|... .+|-+ .+|||++|.+..
T Consensus 90 ~DvvI~iS~SG~t~~~i~~~~~ak~~-g~~vI~IT~~~~ 127 (200)
T 1vim_A 90 QDVLVGISGSGETTSVVNISKKAKDI-GSKLVAVTGKRD 127 (200)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHH-TCEEEEEESCTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHC-CCeEEEEECCCC
Confidence 3788999999998754 34444 689999998653
No 43
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=65.81 E-value=3.9 Score=28.81 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=24.5
Q ss_pred CcEEEEecCCchHHHHHH-----hhCCCCCEEEEecCh
Q 039146 41 ASAIICFTSSGRAARLIA-----KYRPTMPVLSVVIPQ 73 (84)
Q Consensus 41 ~~aIv~~T~sG~ta~~iS-----~~Rp~~pIia~t~~~ 73 (84)
-+.+|++|.||.|+-.+. |-+-.+++|++|.+.
T Consensus 100 ~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~viaIT~~~ 137 (368)
T 1moq_A 100 NSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVP 137 (368)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESST
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 478899999999876543 333228999999865
No 44
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=64.42 E-value=6.4 Score=25.37 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=26.0
Q ss_pred CCcEEEEecCCchHHHH-----HHhhCCCCCEEEEecChh
Q 039146 40 KASAIICFTSSGRAARL-----IAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~-----iS~~Rp~~pIia~t~~~~ 74 (84)
+-+.+|++|.||+|... .+|-+ .+++|++|.++.
T Consensus 114 ~~Dvvi~iS~SG~t~~~~~~~~~ak~~-g~~vi~iT~~~~ 152 (201)
T 3trj_A 114 EDDILLVITTSGDSENILSAVEEAHDL-EMKVIALTGGSG 152 (201)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHT-TCEEEEEEETTC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCcEEEEECCCC
Confidence 45789999999998764 35555 799999997543
No 45
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=63.98 E-value=6.2 Score=27.67 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=25.2
Q ss_pred CcEEEEecCCchHHH-----HHHhhCCCCCEEEEecChh
Q 039146 41 ASAIICFTSSGRAAR-----LIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 41 ~~aIv~~T~sG~ta~-----~iS~~Rp~~pIia~t~~~~ 74 (84)
-+.+|++|.||.|+- ..+|-+ .+++|++|.++.
T Consensus 92 ~dlvI~iS~SG~T~e~l~a~~~ak~~-Ga~~iaIT~~~~ 129 (344)
T 3fj1_A 92 RALCLAVSQSGKSPDIVAMTRNAGRD-GALCVALTNDAA 129 (344)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHC-CCcEEEEECCCC
Confidence 467889999999865 445555 799999997643
No 46
>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA, national on protein structural and functional analyses; 1.35A {Pyrococcus horikoshii} PDB: 2dec_A* 2df8_A 2cb0_A*
Probab=63.95 E-value=8.1 Score=26.69 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=23.5
Q ss_pred cEEEEecCCchHHHHHHhhCC-CCCEEEEecC
Q 039146 42 SAIICFTSSGRAARLIAKYRP-TMPVLSVVIP 72 (84)
Q Consensus 42 ~aIv~~T~sG~ta~~iS~~Rp-~~pIia~t~~ 72 (84)
+.+|++|.||.|+-.+.-.+- ++++|++|.+
T Consensus 81 dlvI~iS~SG~T~e~l~a~~~aka~viaIT~~ 112 (325)
T 2e5f_A 81 ELAVGISRSGETTEILLALEKINVKKLGITTR 112 (325)
T ss_dssp SEEEEECSSSCCHHHHHHHHTCCSCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCEEEEECC
Confidence 689999999999875543321 1999999985
No 47
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=63.73 E-value=13 Score=24.52 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC---------chHHHHHHhhCCCCCEEEEecC
Q 039146 27 SITSSAVRSAIKVKASAIICFTSS---------GRAARLIAKYRPTMPVLSVVIP 72 (84)
Q Consensus 27 ~ia~~a~~~a~~~~~~aIv~~T~s---------G~ta~~iS~~Rp~~pIia~t~~ 72 (84)
..+....+.+.+.+++.||+-+.. |.+++.+.+ +.+|||+.+-++
T Consensus 238 ~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~-~~~~pvLvv~~~ 291 (294)
T 3loq_A 238 TPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIR-RSPVPVFVCKRG 291 (294)
T ss_dssp CHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHH-HCSSCEEEECSC
T ss_pred CHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHh-cCCCCEEEECCC
Confidence 445566677888899988887752 556676765 567999998443
No 48
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=63.21 E-value=5.1 Score=27.86 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=25.7
Q ss_pred CCcEEEEecCCchHHHH-----HHhhCCCCCEEEEecChh
Q 039146 40 KASAIICFTSSGRAARL-----IAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~-----iS~~Rp~~pIia~t~~~~ 74 (84)
+-+.+|++|.||.|+-. .+|-+ .+++|++|.++.
T Consensus 74 ~~dlvI~iS~SG~T~e~l~a~~~ak~~-Ga~~iaIT~~~~ 112 (329)
T 3eua_A 74 EKSLVILCSHSGNTPETVKAAAFARGK-GALTIAMTFKPE 112 (329)
T ss_dssp TTEEEEEEESSSCCHHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence 34789999999998754 44545 799999997643
No 49
>3c3j_A Putative tagatose-6-phosphate ketose/aldose isome; tagatose-6-phosphate ketose/aldose isomerase, structural GEN PSI, MCSG; 1.80A {Escherichia coli}
Probab=62.91 E-value=4 Score=28.99 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=25.6
Q ss_pred CCcEEEEecCCchHHHHHH-----hhC-CCCCEEEEecCh
Q 039146 40 KASAIICFTSSGRAARLIA-----KYR-PTMPVLSVVIPQ 73 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~iS-----~~R-p~~pIia~t~~~ 73 (84)
.-+.+|++|.||.|+-.+. |-+ +.+++|++|.+.
T Consensus 103 ~~dlvI~iS~SG~T~e~l~a~~~ak~~~~ga~~iaIT~~~ 142 (384)
T 3c3j_A 103 HPLLLISFGRSGNSPESVAAVELANQFVPECYHLPITCNE 142 (384)
T ss_dssp SCEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCT
T ss_pred CCeEEEEEeCCcCCHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 3468899999999876554 333 578999999865
No 50
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=60.85 E-value=5.4 Score=27.70 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=19.4
Q ss_pred cCCcEEEEecCCchHHHHHHhh
Q 039146 39 VKASAIICFTSSGRAARLIAKY 60 (84)
Q Consensus 39 ~~~~aIv~~T~sG~ta~~iS~~ 60 (84)
..++.+|+-|.+|.||.-+|.-
T Consensus 171 ~~~DGlIVsTPTGSTAY~lSAG 192 (278)
T 1z0s_A 171 IRCDGFIVATQIGSTGYAFSAG 192 (278)
T ss_dssp EEESEEEEEESGGGGTHHHHTT
T ss_pred EecCeEEEecCCchhHHHhhCC
Confidence 3578999999999999999964
No 51
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=60.46 E-value=6 Score=28.00 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=25.6
Q ss_pred CCcEEEEecCCchHHHHH-----HhhCCCCCEEEEecCh
Q 039146 40 KASAIICFTSSGRAARLI-----AKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~i-----S~~Rp~~pIia~t~~~ 73 (84)
+-+.+|++|.||.|+-.+ ++-+..+++|++|.+.
T Consensus 97 ~~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~ 135 (373)
T 2aml_A 97 HLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDV 135 (373)
T ss_dssp TCCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 347889999999988654 3333268999999876
No 52
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=60.36 E-value=9 Score=26.81 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=25.7
Q ss_pred CCcEEEEecCCchHHHHH-----HhhCCCCCEEEEecCh
Q 039146 40 KASAIICFTSSGRAARLI-----AKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~i-----S~~Rp~~pIia~t~~~ 73 (84)
+-+.+|++|.||.|+-.+ +|-+ .+++|++|.+.
T Consensus 102 ~~dlvI~iS~SG~t~e~~~a~~~ak~~-Ga~vi~IT~~~ 139 (355)
T 2a3n_A 102 KDSVVITLSKSGDTKESVAIAEWCKAQ-GIRVVAITKNA 139 (355)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHT-TCEEEEEESCT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 447899999999987644 4555 78999999865
No 53
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=59.05 E-value=6.7 Score=25.23 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCcEEEEecCCchHHHH-----HHhhCCCCCEEEEecCh
Q 039146 40 KASAIICFTSSGRAARL-----IAKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~-----iS~~Rp~~pIia~t~~~ 73 (84)
+-+.+|++|.||++... .+|-| .++||++|.+.
T Consensus 131 ~~DvvI~iS~SG~t~~~i~~~~~ak~~-G~~vIaIT~~~ 168 (212)
T 2i2w_A 131 EGDVLLGISTSGNSANVIKAIAAAREK-GMKVITLTGKD 168 (212)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHH-TCEEEEEEETT
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 44778999999988643 34444 78999998764
No 54
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=58.97 E-value=4.8 Score=28.34 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=24.9
Q ss_pred CcEEEEecCCchHHHHH-----HhhCCCCCEEEEecChh
Q 039146 41 ASAIICFTSSGRAARLI-----AKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 41 ~~aIv~~T~sG~ta~~i-----S~~Rp~~pIia~t~~~~ 74 (84)
-+.+|++|.||.|+-.+ +|-+ .+++|++|.++.
T Consensus 90 ~dlvI~iS~SG~T~e~l~a~~~ak~~-Ga~~iaIT~~~~ 127 (347)
T 3fkj_A 90 NSVVILASQQGNTAETVAAARVAREK-GAATIGLVYQPD 127 (347)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHH-TCEEEEEESSTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence 46889999999987644 4444 799999997643
No 55
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=57.94 E-value=8.3 Score=27.36 Aligned_cols=34 Identities=9% Similarity=-0.020 Sum_probs=26.0
Q ss_pred cCCcEEEEecCCchHHH-----HHHhhCCCCCEEEEecCh
Q 039146 39 VKASAIICFTSSGRAAR-----LIAKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 39 ~~~~aIv~~T~sG~ta~-----~iS~~Rp~~pIia~t~~~ 73 (84)
.+-+.+|++|.||.|+- ..+|-+ .+++|++|.++
T Consensus 96 ~~~dlvI~iS~SGeT~e~l~a~~~ak~~-Ga~~IaIT~~~ 134 (366)
T 3knz_A 96 SGKALVVGISQGGGSLSTLAAMERARNV-GHITASMAGVA 134 (366)
T ss_dssp SCSEEEEEEESSSCCHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 34577899999999865 445555 79999999764
No 56
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=57.86 E-value=28 Score=23.04 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC---------chHHHHHHhhCCCCCEEEEecC
Q 039146 27 SITSSAVRSAIKVKASAIICFTSS---------GRAARLIAKYRPTMPVLSVVIP 72 (84)
Q Consensus 27 ~ia~~a~~~a~~~~~~aIv~~T~s---------G~ta~~iS~~Rp~~pIia~t~~ 72 (84)
..+......+.+.+++.||+-++. |.++..+.+.- .|||+.+-..
T Consensus 98 ~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~-~~PVlvv~~~ 151 (319)
T 3olq_A 98 RPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKC-PAPVWMVKDK 151 (319)
T ss_dssp CHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHC-SSCEEEEESS
T ss_pred ChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcC-CCCEEEecCc
Confidence 445566677778889999987753 77888887655 6999988544
No 57
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=56.98 E-value=33 Score=22.48 Aligned_cols=37 Identities=14% Similarity=0.014 Sum_probs=27.6
Q ss_pred HHHhcCCcEEEEecCC---------chHHHHHHhhCCCCCEEEEecC
Q 039146 35 SAIKVKASAIICFTSS---------GRAARLIAKYRPTMPVLSVVIP 72 (84)
Q Consensus 35 ~a~~~~~~aIv~~T~s---------G~ta~~iS~~Rp~~pIia~t~~ 72 (84)
.+...+++.||+-+.. |.++..+.+.-| |||+.+-..
T Consensus 118 ~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~-~PVlvv~~~ 163 (294)
T 3loq_A 118 IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSK-VPVYIFKHD 163 (294)
T ss_dssp HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCS-SCEEEECCC
T ss_pred eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCC-CCEEEecCc
Confidence 7788899998887653 456677777665 999988544
No 58
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=56.52 E-value=7.6 Score=27.36 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=24.8
Q ss_pred CcEEEEecCCchHHHHH-----HhhCCCCCEEEEecCh
Q 039146 41 ASAIICFTSSGRAARLI-----AKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 41 ~~aIv~~T~sG~ta~~i-----S~~Rp~~pIia~t~~~ 73 (84)
-+.+|++|.||.|+-.+ +|-+ .+++|++|.+.
T Consensus 98 ~dlvI~iS~SG~T~e~l~a~~~Ak~~-Ga~~iaIT~~~ 134 (367)
T 2poc_A 98 DDTCVFVSQSGETADSILALQYCLER-GALTVGIVNSV 134 (367)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHT-TCEEEEEESST
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHC-CCCEEEEECCC
Confidence 35889999999987644 4545 78999999864
No 59
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=56.28 E-value=6.2 Score=28.02 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=24.7
Q ss_pred CcEEEEecCCchHHHH-----HHhhCCCCCEEEEecChh
Q 039146 41 ASAIICFTSSGRAARL-----IAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 41 ~~aIv~~T~sG~ta~~-----iS~~Rp~~pIia~t~~~~ 74 (84)
-+.+|++|.||.|+-. .+|-+-.+++|++|.++.
T Consensus 102 ~dlvI~iS~SG~T~e~l~al~~ak~~G~a~~iaIT~~~~ 140 (372)
T 3tbf_A 102 GSLFVSISQSGETADTLESLRKSKKQNYVGSMCICNVPN 140 (372)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHTTTTEEEEEEEESSSS
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHcCCceEEEEcCCCC
Confidence 4678999999999764 344442289999997643
No 60
>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1, putative putative tagatose-6-phosphate ketose/A isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4}
Probab=56.19 E-value=6.1 Score=28.38 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=26.0
Q ss_pred CCcEEEEecCCchHHHH-----HHhhC-CCCCEEEEecChh
Q 039146 40 KASAIICFTSSGRAARL-----IAKYR-PTMPVLSVVIPQL 74 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~-----iS~~R-p~~pIia~t~~~~ 74 (84)
.-+.+|++|.||.|+-. .+|-+ +.+++|++|.+..
T Consensus 109 ~~dl~i~iS~SG~T~e~~~al~~ak~~~~g~~~i~IT~~~~ 149 (389)
T 3i0z_A 109 VATVLVSFARSGNSPESLATVDLAKSLVDELYQVTITCAAD 149 (389)
T ss_dssp SEEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhhcCCCcEEEEECCCC
Confidence 34678899999999764 44444 4799999998653
No 61
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=55.46 E-value=33 Score=22.51 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEecC---------CchHHHHHHhhCCCCCEEEE
Q 039146 27 SITSSAVRSAIKVKASAIICFTS---------SGRAARLIAKYRPTMPVLSV 69 (84)
Q Consensus 27 ~ia~~a~~~a~~~~~~aIv~~T~---------sG~ta~~iS~~Rp~~pIia~ 69 (84)
..+......+.+.+++.||+-+. -|.++..+.+ +.+|||+.+
T Consensus 224 ~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~-~~~~pVLvv 274 (290)
T 3mt0_A 224 PADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLD-TLESDVLVL 274 (290)
T ss_dssp CHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHT-TCSSEEEEE
T ss_pred CHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHh-cCCCCEEEE
Confidence 45666777888999999999874 3778888886 457999988
No 62
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=55.22 E-value=6.9 Score=25.66 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=24.9
Q ss_pred CCcEEEEecCCchHHHH-----HHhhCCCCCEEEEecCh
Q 039146 40 KASAIICFTSSGRAARL-----IAKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~-----iS~~Rp~~pIia~t~~~ 73 (84)
+-+.+|++|.||+|... .+|-| .++||++|...
T Consensus 108 ~~Dv~I~iS~SG~t~~~i~~~~~Ak~~-G~~vI~IT~~~ 145 (243)
T 3cvj_A 108 NKDVIMIISNSGRNTVPVEMAIESRNI-GAKVIAMTSMK 145 (243)
T ss_dssp TTCEEEEECSSCCSHHHHHHHHHHHHH-TCEEEEEECHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 44789999999998753 34444 68999998764
No 63
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=54.07 E-value=8 Score=26.97 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=24.4
Q ss_pred cEEEEecCCchHHHHH-----HhhCCCCCEEEEecCh
Q 039146 42 SAIICFTSSGRAARLI-----AKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 42 ~aIv~~T~sG~ta~~i-----S~~Rp~~pIia~t~~~ 73 (84)
+.+|++|.||.|+-.+ +|-+ .+++|++|.++
T Consensus 102 dlvI~iS~SG~T~e~l~a~~~ak~~-Ga~vIaIT~~~ 137 (342)
T 1j5x_A 102 GLAFLFSRTGNTTEVLLANDVLKKR-NHRTIGITIEE 137 (342)
T ss_dssp EEEEEECSSSCCHHHHHHHHHHHHT-TEEEEEEESCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHC-CCCEEEEECCC
Confidence 6899999999987644 4445 78999999765
No 64
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=53.51 E-value=8.1 Score=29.19 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=24.1
Q ss_pred CcEEEEecCCchHHHHH-----HhhCCCCCEEEEecCh
Q 039146 41 ASAIICFTSSGRAARLI-----AKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 41 ~~aIv~~T~sG~ta~~i-----S~~Rp~~pIia~t~~~ 73 (84)
-+.+|++|.||.|+-.+ +|-+-++++|++|.+.
T Consensus 340 ~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~~IaIT~~~ 377 (608)
T 2bpl_A 340 NSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVP 377 (608)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHTTCSEEEEEESST
T ss_pred CCEEEEEeCCcCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 36789999999987644 3444118999999864
No 65
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=53.51 E-value=9.3 Score=27.02 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=24.8
Q ss_pred CcEEEEecCCchHHHHH-----HhhCCCCCEEEEecCh
Q 039146 41 ASAIICFTSSGRAARLI-----AKYRPTMPVLSVVIPQ 73 (84)
Q Consensus 41 ~~aIv~~T~sG~ta~~i-----S~~Rp~~pIia~t~~~ 73 (84)
-+.+|++|.||.|+-.+ +|-+ .+++|++|.+.
T Consensus 108 ~dlvI~iS~SG~T~e~l~a~~~Ak~~-Ga~~iaIT~~~ 144 (375)
T 2zj3_A 108 DDVCFFLSQSGETADTLMGLRYCKER-GALTVGITNTV 144 (375)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHT-TCEEEEEESCT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHc-CCcEEEEECCC
Confidence 36889999999987644 4445 78999999865
No 66
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=50.85 E-value=12 Score=25.23 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=24.2
Q ss_pred CCcEEEEecCCchHHHHHHhh----CCCCCEEEEec
Q 039146 40 KASAIICFTSSGRAARLIAKY----RPTMPVLSVVI 71 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~iS~~----Rp~~pIia~t~ 71 (84)
.++++++-|.+|.||..+|.- -|..+.+.+++
T Consensus 148 ~~DGlivsTptGSTaY~~SaGGpiv~P~~~~~~ltp 183 (272)
T 2i2c_A 148 RGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTE 183 (272)
T ss_dssp EESEEEEECTGGGGTHHHHTTCCCCCTTSCEEEEEE
T ss_pred ECCEEEEEccccHHHHHHcCCCCeeCCCCCceEEeC
Confidence 468899999999999999854 44556666653
No 67
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=50.05 E-value=12 Score=26.20 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=25.6
Q ss_pred CCcEEEEecCCchHHH-----HHHhhCCCCCEEEEecChh
Q 039146 40 KASAIICFTSSGRAAR-----LIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~-----~iS~~Rp~~pIia~t~~~~ 74 (84)
+-+.+|++|.||.|+- ..+|-+ .+++|++|.++.
T Consensus 90 ~~dl~i~iS~SG~T~e~~~a~~~ak~~-g~~~i~IT~~~~ 128 (334)
T 3hba_A 90 AGGLVIVISQSGRSPDILAQARMAKNA-GAFCVALVNDET 128 (334)
T ss_dssp TTCEEEEEESSSCCHHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHc-CCcEEEEeCCCC
Confidence 3467899999999875 445555 799999997653
No 68
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=46.93 E-value=48 Score=22.34 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=31.9
Q ss_pred HHHHHHhcC--CcEEEEecCCchHHHHHHh----hCCCCCEEEEecC
Q 039146 32 AVRSAIKVK--ASAIICFTSSGRAARLIAK----YRPTMPVLSVVIP 72 (84)
Q Consensus 32 a~~~a~~~~--~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~ 72 (84)
+.++.+.++ .++||+.+-+|.+..-+++ ..|...||++.+.
T Consensus 156 ~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~ 202 (304)
T 1ve1_A 156 GPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPA 202 (304)
T ss_dssp HHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEG
T ss_pred HHHHHHHcCCCCCEEEEecCCchhHHHHHHHHHHhCCCCEEEEEecC
Confidence 456777764 7999999999999776655 4688899998654
No 69
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=46.68 E-value=15 Score=25.23 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=25.5
Q ss_pred CCcEEEEecCCchHHHHH-----HhhCCCCCEEEEecChh
Q 039146 40 KASAIICFTSSGRAARLI-----AKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~i-----S~~Rp~~pIia~t~~~~ 74 (84)
+-+.+|++|.||+|...+ +|-+ .+++|++|.++.
T Consensus 140 ~~DvvI~IS~SG~T~~vi~al~~Ak~~-Ga~~IaIT~~~~ 178 (306)
T 1nri_A 140 KNDVLVGIAASGRTPYVIAGLQYAKSL-GALTISIASNPK 178 (306)
T ss_dssp TTSEEEEECTTSCCHHHHHHHHHHHHH-TCEEEEEESSTT
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEECCCC
Confidence 458899999999987643 4444 789999987653
No 70
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=46.57 E-value=47 Score=22.83 Aligned_cols=42 Identities=0% Similarity=-0.061 Sum_probs=31.6
Q ss_pred HHHHHHHhc-CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecC
Q 039146 31 SAVRSAIKV-KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIP 72 (84)
Q Consensus 31 ~a~~~a~~~-~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~ 72 (84)
.+.++.+.+ +.++||+.+-+|.+.--+++ ..|...||++.+.
T Consensus 167 ~~~Ei~~q~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~ 213 (325)
T 3dwg_A 167 TGPELLADLPEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPR 213 (325)
T ss_dssp HHHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHSTTCEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEeeC
Confidence 345666666 48999999999988765554 4899999998653
No 71
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=45.66 E-value=50 Score=22.31 Aligned_cols=42 Identities=0% Similarity=-0.011 Sum_probs=32.1
Q ss_pred HHHHHHhcC--CcEEEEecCCchHHHHHHh----hCCCCCEEEEecCh
Q 039146 32 AVRSAIKVK--ASAIICFTSSGRAARLIAK----YRPTMPVLSVVIPQ 73 (84)
Q Consensus 32 a~~~a~~~~--~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~~ 73 (84)
+.++.+.++ .++||+.+-+|.+..-+++ ..|...||++.+..
T Consensus 155 ~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~ 202 (303)
T 2v03_A 155 GPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEE 202 (303)
T ss_dssp HHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECT
T ss_pred HHHHHHHhCCCCCEEEEEeCccHhHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 456676764 7999999999999876654 36888999997643
No 72
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=45.50 E-value=18 Score=24.39 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=25.6
Q ss_pred CCcEEEEecCCchHHHHHHh----hCCCCCEEEEec
Q 039146 40 KASAIICFTSSGRAARLIAK----YRPTMPVLSVVI 71 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~ 71 (84)
.++.+++.|.+|.||.-+|- .-|.+.++.+++
T Consensus 175 ~~dglivstptGSTay~~SaGG~iv~P~~~~~~l~p 210 (292)
T 2an1_A 175 RSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVP 210 (292)
T ss_dssp EESEEEEECTGGGGTHHHHTTCCEECTTCSEEEEEE
T ss_pred EeCEEEECCCCchHHHHHhCCCCCCCCCCCeEEEEe
Confidence 47889999999999998885 556777777764
No 73
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=44.52 E-value=29 Score=21.48 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCC--CCCEEEEecChhh
Q 039146 25 LESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRP--TMPVLSVVIPQLK 75 (84)
Q Consensus 25 ~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp--~~pIia~t~~~~~ 75 (84)
--.++.-+..++. +.+.+|.+|.+|.-...+.+.|- ...|+++......
T Consensus 95 Dv~laiD~~~~a~--~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~~~ 145 (165)
T 2qip_A 95 DVGITLDAIEIAP--DVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLT 145 (165)
T ss_dssp HHHHHHHHHHHGG--GCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGGGS
T ss_pred cHHHHHHHHHhhc--cCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCCcC
Confidence 3466666777763 45788889999999999998887 4888888765433
No 74
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=44.50 E-value=20 Score=22.97 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=23.6
Q ss_pred CCcEEEEecCCchHHH-----HHHhhCCCCCEEEEec
Q 039146 40 KASAIICFTSSGRAAR-----LIAKYRPTMPVLSVVI 71 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~-----~iS~~Rp~~pIia~t~ 71 (84)
..+.++++|+||+.+- ..+|-| ..|+|++|+
T Consensus 77 ~~D~vii~S~Sg~n~~~ie~A~~ake~-G~~vIaITs 112 (170)
T 3jx9_A 77 AVDRVLIFTPDTERSDLLASLARYDAW-HTPYSIITL 112 (170)
T ss_dssp TTCEEEEEESCSCCHHHHHHHHHHHHH-TCCEEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCcEEEEeC
Confidence 4688999999999763 334444 799999998
No 75
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=44.12 E-value=41 Score=21.11 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=25.5
Q ss_pred CCcEEEEecCCchHHHH-HH---hh---------CCCCCEEEEecChhhhccc
Q 039146 40 KASAIICFTSSGRAARL-IA---KY---------RPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~-iS---~~---------Rp~~pIia~t~~~~~~r~L 79 (84)
+--.+...|-+|.|.-. +. +. ++...++.++|....+.|+
T Consensus 58 ~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 110 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHV 110 (228)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHH
Confidence 33456778999999642 21 11 2556678888888877654
No 76
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=44.02 E-value=66 Score=22.52 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=30.3
Q ss_pred HHHHHHhcC--CcEEEEecCCchHHHHHHh----hC-CCCCEEEEecC
Q 039146 32 AVRSAIKVK--ASAIICFTSSGRAARLIAK----YR-PTMPVLSVVIP 72 (84)
Q Consensus 32 a~~~a~~~~--~~aIv~~T~sG~ta~~iS~----~R-p~~pIia~t~~ 72 (84)
+.++.+.++ .++||+.+-+|.+.--+++ .. |+++||++-+.
T Consensus 185 ~~Ei~~q~~~~~D~vvvpvG~GG~~aGi~~~~k~~~~p~~~vigVe~~ 232 (364)
T 4h27_A 185 VKELKETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETF 232 (364)
T ss_dssp HHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEET
T ss_pred HHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 456666663 7999999999988665443 33 88999999653
No 77
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=42.70 E-value=50 Score=22.39 Aligned_cols=42 Identities=7% Similarity=0.027 Sum_probs=32.8
Q ss_pred HHHHHHhcC--CcEEEEecCCchHHHHHHhh----C-CCCCEEEEecCh
Q 039146 32 AVRSAIKVK--ASAIICFTSSGRAARLIAKY----R-PTMPVLSVVIPQ 73 (84)
Q Consensus 32 a~~~a~~~~--~~aIv~~T~sG~ta~~iS~~----R-p~~pIia~t~~~ 73 (84)
+.++.+.++ .++||+.+-+|.+..-++++ . |...||++.+..
T Consensus 158 ~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~ 206 (316)
T 1y7l_A 158 GPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVE 206 (316)
T ss_dssp HHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETT
T ss_pred HHHHHHHcCCCCCEEEEeCCccccHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 567777774 69999999999998766653 4 899999997644
No 78
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=42.64 E-value=64 Score=22.26 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=31.5
Q ss_pred HHHHHHHhc--CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecC
Q 039146 31 SAVRSAIKV--KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIP 72 (84)
Q Consensus 31 ~a~~~a~~~--~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~ 72 (84)
.+.++.+.+ ..++||+..-+|.+.--+++ ..|...||++-+.
T Consensus 166 ~~~Ei~~q~~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~ 213 (334)
T 3tbh_A 166 TGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPT 213 (334)
T ss_dssp HHHHHHHHTTSCCSEEEEECSSSHHHHHHHHHHHHTTCCCEEEEEEET
T ss_pred HHHHHHHHhCCCCCEEEeccCCcHhHHHHHHHHHHhCCCCEEEEEeeC
Confidence 345666665 47999999999988765554 4799999999653
No 79
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=41.88 E-value=73 Score=20.99 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCcEEEEecC---------CchHHHHHHhhCCCCCEEEE
Q 039146 29 TSSAVRSAIKVKASAIICFTS---------SGRAARLIAKYRPTMPVLSV 69 (84)
Q Consensus 29 a~~a~~~a~~~~~~aIv~~T~---------sG~ta~~iS~~Rp~~pIia~ 69 (84)
+....+.+. +++.||+-+. -|.++..+.+.= .|||+.+
T Consensus 258 ~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~-~~pVlvv 304 (309)
T 3cis_A 258 ARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLA-RTPVIVA 304 (309)
T ss_dssp HHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHC-SSCEEEE
T ss_pred HHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcC-CCCEEEe
Confidence 334444454 8999999875 377888888765 6999988
No 80
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=41.62 E-value=11 Score=25.37 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=25.2
Q ss_pred CCcEEEEecCCchHHHHHHh----hCCCCCEEEEec
Q 039146 40 KASAIICFTSSGRAARLIAK----YRPTMPVLSVVI 71 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~ 71 (84)
.++++++.|.+|.||..+|- .-|..+++.+++
T Consensus 147 ~~dGlivsTptGSTaY~~SaGGpiv~P~~~~~~i~p 182 (258)
T 1yt5_A 147 FADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISP 182 (258)
T ss_dssp EESEEEEECTGGGGTTTTTTTCCCCCTTCCEEEEEE
T ss_pred EccEEEEEcCCCcHHHHhhCCCcccCCCCCEEEEEE
Confidence 46889999999999998874 556777777764
No 81
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=41.58 E-value=73 Score=21.55 Aligned_cols=42 Identities=7% Similarity=0.094 Sum_probs=31.4
Q ss_pred HHHHHHHhcC--CcEEEEecCCchHHHHHHhh-----CCCCCEEEEecC
Q 039146 31 SAVRSAIKVK--ASAIICFTSSGRAARLIAKY-----RPTMPVLSVVIP 72 (84)
Q Consensus 31 ~a~~~a~~~~--~~aIv~~T~sG~ta~~iS~~-----Rp~~pIia~t~~ 72 (84)
.+.++.+.++ .++||+.+-+|.+..-++++ .|...||++.+.
T Consensus 144 ~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~ 192 (318)
T 2rkb_A 144 LVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETH 192 (318)
T ss_dssp HHHHHHHHSSSCCSEEEEECSSSHHHHHHHHHHHHHTCTTSCEEEEEET
T ss_pred HHHHHHHhcCCCCCEEEEeeCCCcHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 3456666664 79999999999998766553 288899999764
No 82
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=41.47 E-value=64 Score=21.92 Aligned_cols=41 Identities=10% Similarity=-0.017 Sum_probs=31.7
Q ss_pred HHHHHHhc--CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecC
Q 039146 32 AVRSAIKV--KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIP 72 (84)
Q Consensus 32 a~~~a~~~--~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~ 72 (84)
+.++.+.+ +.++||+..-+|.+..-+++ ..|...|+++-+.
T Consensus 162 ~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~ 208 (322)
T 1z7w_A 162 GPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPV 208 (322)
T ss_dssp HHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEG
T ss_pred HHHHHHHhcCCCCEEEEecCccHhHHHHHHHHHHcCCCCEEEEEecC
Confidence 45666666 47999999999999865554 4699999999654
No 83
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=41.39 E-value=72 Score=22.42 Aligned_cols=42 Identities=12% Similarity=0.026 Sum_probs=31.5
Q ss_pred HHHHHHHhcC--CcEEEEecCCchHHHHHHh----hC-CCCCEEEEecC
Q 039146 31 SAVRSAIKVK--ASAIICFTSSGRAARLIAK----YR-PTMPVLSVVIP 72 (84)
Q Consensus 31 ~a~~~a~~~~--~~aIv~~T~sG~ta~~iS~----~R-p~~pIia~t~~ 72 (84)
.+.++.+.++ .++||+.+-+|.+.--+++ .. |...||++.+.
T Consensus 184 ~~~Ei~~ql~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~p~~~vigVe~~ 232 (372)
T 1p5j_A 184 IVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETF 232 (372)
T ss_dssp HHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEET
T ss_pred HHHHHHHHcCCCCCEEEEecCCchHHHHHHHHHHHhCCCCceEEEEecC
Confidence 3456666663 7999999999999866554 22 88999999764
No 84
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=41.24 E-value=66 Score=21.73 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=32.2
Q ss_pred HHHHHHhc--CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecCh
Q 039146 32 AVRSAIKV--KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIPQ 73 (84)
Q Consensus 32 a~~~a~~~--~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~~ 73 (84)
+.++.+.+ +.++||+.+-+|.+..-+++ ..|...||++.+..
T Consensus 162 ~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~ 209 (313)
T 2q3b_A 162 AEEVWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAA 209 (313)
T ss_dssp HHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETT
T ss_pred HHHHHHHcCCCCCEEEEccCcchhHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 56677666 47999999999999765554 46899999986643
No 85
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=40.09 E-value=46 Score=19.53 Aligned_cols=41 Identities=12% Similarity=0.061 Sum_probs=29.3
Q ss_pred cCCcEEEEecCCchHH----HHHHhhCCCCCEEEEecChhhhccc
Q 039146 39 VKASAIICFTSSGRAA----RLIAKYRPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 39 ~~~~aIv~~T~sG~ta----~~iS~~Rp~~pIia~t~~~~~~r~L 79 (84)
-+++++|+.+.+.... ..+.+..|...||+...++.-...|
T Consensus 70 ~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l 114 (140)
T 3fwz_A 70 ECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYI 114 (140)
T ss_dssp GGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESSHHHHHHH
T ss_pred ccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHH
Confidence 4678888877766544 3444567999999999988765443
No 86
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=39.06 E-value=22 Score=24.36 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=23.3
Q ss_pred CCcEEEEecCCchHHHHHHhhC----CCCCEEEEe
Q 039146 40 KASAIICFTSSGRAARLIAKYR----PTMPVLSVV 70 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~iS~~R----p~~pIia~t 70 (84)
.++.+++-|.+|.||..+|.-- |.++.+.++
T Consensus 187 ~~dGlivsTptGSTaY~lSaGGpiv~P~~~~~~l~ 221 (307)
T 1u0t_A 187 GCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVV 221 (307)
T ss_dssp EESEEEEECTGGGGTHHHHTTCCEECTTCCCEEEE
T ss_pred cCCEEEEccchhhHHHHhcCCCCccCCCCCeEEEE
Confidence 4788999999999999888653 444555554
No 87
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=39.06 E-value=64 Score=23.66 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=32.4
Q ss_pred HHHHHHHhc--CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecCh
Q 039146 31 SAVRSAIKV--KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIPQ 73 (84)
Q Consensus 31 ~a~~~a~~~--~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~~ 73 (84)
.+.++.+.+ ..++||+..-+|.+.--+++ ..|.+.||++-+..
T Consensus 210 ~~~Ei~~q~~~~~d~vv~~vG~GG~~~G~~~~~k~~~p~~~vigve~~~ 258 (527)
T 3pc3_A 210 TAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYG 258 (527)
T ss_dssp HHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEETT
T ss_pred HHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 355666666 37999999999988776554 38999999997643
No 88
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=38.28 E-value=51 Score=18.19 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=28.3
Q ss_pred HHHHHHhcCCcEEEEecC----Cc-hHHHHHHhhCCCCCEEEEecChhh
Q 039146 32 AVRSAIKVKASAIICFTS----SG-RAARLIAKYRPTMPVLSVVIPQLK 75 (84)
Q Consensus 32 a~~~a~~~~~~aIv~~T~----sG-~ta~~iS~~Rp~~pIia~t~~~~~ 75 (84)
+.......+.+.|++--. +| ...+.+-+..|..|||.++.....
T Consensus 43 a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~ 91 (130)
T 3eod_A 43 ALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENM 91 (130)
T ss_dssp HHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCCCH
T ss_pred HHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCH
Confidence 334445667787777532 33 344566667789999999876543
No 89
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=38.17 E-value=66 Score=22.18 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=31.0
Q ss_pred HHHHHHhc----CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecCh
Q 039146 32 AVRSAIKV----KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIPQ 73 (84)
Q Consensus 32 a~~~a~~~----~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~~ 73 (84)
+.++.+.+ +.++||+..-+|.|.--+++ ..|.+.||++-+..
T Consensus 187 ~~EI~~q~~~~~~~d~vv~~vGtGGt~aGi~~~~k~~~~~~~vigVe~~~ 236 (342)
T 4d9b_A 187 ALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSR 236 (342)
T ss_dssp HHHHHHHHTTTCCCCEEEEEESSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred HHHHHHHHhccCCCCEEEEeCCCCHHHHHHHHHHHhhCCCCeEEEEEecC
Confidence 44555554 47999999999988765554 47999999996643
No 90
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=37.60 E-value=60 Score=22.44 Aligned_cols=40 Identities=5% Similarity=0.060 Sum_probs=31.4
Q ss_pred HHHHhcC--CcEEEEecCCchHHHHHHh----hCCCCCEEEEecCh
Q 039146 34 RSAIKVK--ASAIICFTSSGRAARLIAK----YRPTMPVLSVVIPQ 73 (84)
Q Consensus 34 ~~a~~~~--~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~~ 73 (84)
++.+.++ .++||+.+-+|.+..-+++ ..|...||++.+..
T Consensus 175 Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigVe~~~ 220 (343)
T 2pqm_A 175 EIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEE 220 (343)
T ss_dssp HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGG
T ss_pred HHHHHcCCCCCEEEEecCCchhHHHHHHHHHHcCCCCEEEEEecCC
Confidence 7777774 6999999999999876554 46899999996643
No 91
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=37.51 E-value=75 Score=22.02 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=30.8
Q ss_pred HHHHHHhc-CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecC
Q 039146 32 AVRSAIKV-KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIP 72 (84)
Q Consensus 32 a~~~a~~~-~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~ 72 (84)
+.++.+.+ +.++||+..-+|.+.--+++ ..|.+.||++-+.
T Consensus 167 ~~Ei~~q~~~~d~vvv~vG~GG~~aGi~~~~k~~~p~~~vigVe~~ 212 (346)
T 3l6b_A 167 ALEVLNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPS 212 (346)
T ss_dssp HHHHHHHSTTCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEG
T ss_pred HHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 34555555 67999999999988765544 4799999999654
No 92
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=37.27 E-value=28 Score=23.69 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCcEEEEecCCchH-HHHHHhhCCCCCEEEEe
Q 039146 29 TSSAVRSAIKVKASAIICFTSSGRA-ARLIAKYRPTMPVLSVV 70 (84)
Q Consensus 29 a~~a~~~a~~~~~~aIv~~T~sG~t-a~~iS~~Rp~~pIia~t 70 (84)
+...++.-...++++||+..++... +..--+-+-..|||.+.
T Consensus 56 ~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvigii 98 (269)
T 3ist_A 56 TWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVI 98 (269)
T ss_dssp HHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESH
T ss_pred HHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEeec
Confidence 3344444456699999998887665 24333444469999864
No 93
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine deaminase, PLP, threonine DEH L-threonine metabolism; HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A* 2gn2_A*
Probab=36.74 E-value=81 Score=21.72 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=31.9
Q ss_pred HHHHHHhc-CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecC
Q 039146 32 AVRSAIKV-KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIP 72 (84)
Q Consensus 32 a~~~a~~~-~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~ 72 (84)
+.++.+.+ +.++||+..-+|.+..-+++ ..|...||++.+.
T Consensus 179 ~~Ei~~q~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~ 224 (342)
T 2gn0_A 179 GLEIMEDLYDVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAE 224 (342)
T ss_dssp HHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEET
T ss_pred HHHHHHHcCCCCEEEEecCCchHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 55666666 48999999999999775554 4699999999764
No 94
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=36.49 E-value=76 Score=23.77 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=32.3
Q ss_pred HHHHHHhc-CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecC
Q 039146 32 AVRSAIKV-KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIP 72 (84)
Q Consensus 32 a~~~a~~~-~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~ 72 (84)
+.++.+.+ +.++|++..-+|.+.--+++ .+|...||++.+.
T Consensus 170 g~EI~eQl~~~D~vvvpvGgGGliaGia~~lk~~~P~~kVIgVep~ 215 (514)
T 1tdj_A 170 ALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAE 215 (514)
T ss_dssp HHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEET
T ss_pred HHHHHHHCCCCCEEEEccCcHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 55666666 37999999999998776655 4799999999774
No 95
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*
Probab=36.37 E-value=77 Score=21.52 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=31.5
Q ss_pred HHHHHHhc-CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecC
Q 039146 32 AVRSAIKV-KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIP 72 (84)
Q Consensus 32 a~~~a~~~-~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~ 72 (84)
+.++.+.+ +.++||+..-+|.+.--+++ ..|...||++-+.
T Consensus 165 ~~Ei~~q~~~~d~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigve~~ 210 (323)
T 1v71_A 165 AKELFEEVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPE 210 (323)
T ss_dssp HHHHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEG
T ss_pred HHHHHHhcCCCCEEEEecCCcHHHHHHHHHHHHcCCCCEEEEEEeC
Confidence 45566555 47999999999999876554 4699999999764
No 96
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=36.12 E-value=59 Score=21.93 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=30.9
Q ss_pred HHHHHHhcC--CcEEEEecCCchHHHHHHh----hCCCCCEEEEecCh
Q 039146 32 AVRSAIKVK--ASAIICFTSSGRAARLIAK----YRPTMPVLSVVIPQ 73 (84)
Q Consensus 32 a~~~a~~~~--~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~~ 73 (84)
+.++.+.++ .+.||+.+-+|.+..-+++ ..|...||++.+..
T Consensus 159 ~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigve~~~ 206 (308)
T 2egu_A 159 GKEIVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPAD 206 (308)
T ss_dssp HHHHHHHHTTCCCEEEEEGGGTHHHHHHHHHHHHHCTTCEEEEEEECC
T ss_pred HHHHHHHcCCCCCEEEEeeCCchhHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 455555553 7999999999999765554 46889999986643
No 97
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=34.61 E-value=54 Score=23.51 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=32.8
Q ss_pred HHHHhcCCcEEEEecCCchHHHHH----HhhCCCCCEEEEecChhhhccc
Q 039146 34 RSAIKVKASAIICFTSSGRAARLI----AKYRPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 34 ~~a~~~~~~aIv~~T~sG~ta~~i----S~~Rp~~pIia~t~~~~~~r~L 79 (84)
..+.--+++++|+.+.+......+ -+..|+.+||+-+.+..-...|
T Consensus 62 ~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L 111 (413)
T 3l9w_A 62 ESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRL 111 (413)
T ss_dssp HHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHH
T ss_pred HhcCCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence 334444789888888776655443 3678999999999988766544
No 98
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=34.52 E-value=61 Score=17.99 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=26.3
Q ss_pred HHHHhcCCcEEEEecC---------Cch-HHHHHHhhCCCCCEEEEecChh
Q 039146 34 RSAIKVKASAIICFTS---------SGR-AARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 34 ~~a~~~~~~aIv~~T~---------sG~-ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
........+.|++--. +|. ..+.+-+..|..|||.++....
T Consensus 41 ~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 91 (140)
T 2qr3_A 41 TVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYAD 91 (140)
T ss_dssp HHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGG
T ss_pred HHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCC
Confidence 3444556787777533 232 3456666679999999987654
No 99
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=34.29 E-value=1e+02 Score=20.92 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=32.1
Q ss_pred HHHHHHHhc--CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecC
Q 039146 31 SAVRSAIKV--KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIP 72 (84)
Q Consensus 31 ~a~~~a~~~--~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~ 72 (84)
.+.++.+.+ +.++||+..-+|.|..-+++ ..|...||++-+.
T Consensus 170 ~~~Ei~~q~~~~~d~vv~~vGtGGt~~Gi~~~lk~~~~~~~vigVe~~ 217 (325)
T 1j0a_A 170 AVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVG 217 (325)
T ss_dssp HHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECS
T ss_pred HHHHHHHhhCCCCCEEEEeCCchHhHHHHHHHHHhcCCCceEEEEEec
Confidence 356666666 47999999999999865554 5789999999654
No 100
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=33.93 E-value=84 Score=19.42 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=25.0
Q ss_pred cEEEEecCCchHHHH----HHhh---CCCCCEEEEecChhhhccc
Q 039146 42 SAIICFTSSGRAARL----IAKY---RPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 42 ~aIv~~T~sG~ta~~----iS~~---Rp~~pIia~t~~~~~~r~L 79 (84)
-.+...|-+|.|... +.+. .....++.++|....+.|+
T Consensus 54 ~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 98 (224)
T 1qde_A 54 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 98 (224)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHH
Confidence 456678899999652 2222 3456788888887776554
No 101
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1
Probab=33.91 E-value=89 Score=21.01 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=26.6
Q ss_pred CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecC
Q 039146 40 KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIP 72 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~ 72 (84)
+.++||+.+-+|.+.--+++ ..|...|+++.+.
T Consensus 169 ~~d~vvvpvG~Gg~~~Gi~~~~k~~~~~~~vigve~~ 205 (311)
T 1ve5_A 169 FPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPE 205 (311)
T ss_dssp CCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEG
T ss_pred CCCEEEEccCchHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 47899999999999776554 4689999999764
No 102
>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733, cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES; 1.48A {Francisella tularensis} PDB: 3m5p_A* 3q7i_A* 3q88_A*
Probab=33.90 E-value=19 Score=27.40 Aligned_cols=40 Identities=8% Similarity=-0.019 Sum_probs=29.4
Q ss_pred cEEEEecCCchHHHHHHhhC---------------CCCCEEEEecChhhhccccc
Q 039146 42 SAIICFTSSGRAARLIAKYR---------------PTMPVLSVVIPQLKTNQLRW 81 (84)
Q Consensus 42 ~aIv~~T~sG~ta~~iS~~R---------------p~~pIia~t~~~~~~r~L~l 81 (84)
-.+||.|.||.|.--++.+| ...-++|+|.+.+.+..+++
T Consensus 195 TLfiViSKSgtT~ET~~n~~~ar~wl~~~~g~~~~~~khfvAvTt~~~~a~~~Gi 249 (543)
T 3ljk_A 195 TLLIIASKSFSTEETLLNSISAREWLLDHYEDEKAVANHFVAISSKLDKVKEFGI 249 (543)
T ss_dssp EEEEEECTTSCCHHHHHHHHHHHHHHHHHHCCGGGGGGTEEEECSCHHHHHHHTC
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHhcCCcccccCeEEEEcCChHHHHHcCC
Confidence 56888999999876555322 34569999999888777665
No 103
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=33.86 E-value=56 Score=20.64 Aligned_cols=38 Identities=8% Similarity=0.113 Sum_probs=24.9
Q ss_pred cEEEEecCCchHHH----HHHhh---CCCCCEEEEecChhhhccc
Q 039146 42 SAIICFTSSGRAAR----LIAKY---RPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 42 ~aIv~~T~sG~ta~----~iS~~---Rp~~pIia~t~~~~~~r~L 79 (84)
-.+...|-+|+|.. .+.+. .+...++.++|....+.|.
T Consensus 64 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 108 (230)
T 2oxc_A 64 LIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQI 108 (230)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHH
Confidence 34566788999954 23332 3456788888887776553
No 104
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=33.78 E-value=56 Score=19.93 Aligned_cols=38 Identities=8% Similarity=0.165 Sum_probs=23.6
Q ss_pred cEEEEecCCchHHHHH----Hhh---CCCCCEEEEecChhhhccc
Q 039146 42 SAIICFTSSGRAARLI----AKY---RPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 42 ~aIv~~T~sG~ta~~i----S~~---Rp~~pIia~t~~~~~~r~L 79 (84)
-.+...|-+|.|.-.+ .+. ++...++.++|....+.|.
T Consensus 43 ~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 87 (206)
T 1vec_A 43 ILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV 87 (206)
T ss_dssp EEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHH
T ss_pred EEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHH
Confidence 3455568999995322 222 2345688888887776553
No 105
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=32.78 E-value=58 Score=22.00 Aligned_cols=42 Identities=7% Similarity=0.085 Sum_probs=32.0
Q ss_pred HHHHHHhcC--CcEEEEecCCchHHHHHHhh----CCC-CCEEEEecCh
Q 039146 32 AVRSAIKVK--ASAIICFTSSGRAARLIAKY----RPT-MPVLSVVIPQ 73 (84)
Q Consensus 32 a~~~a~~~~--~~aIv~~T~sG~ta~~iS~~----Rp~-~pIia~t~~~ 73 (84)
+.++.+.++ .++||+.+-+|.+..-++++ .|. ..||++.+..
T Consensus 159 ~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~~vigve~~~ 207 (303)
T 1o58_A 159 GPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAK 207 (303)
T ss_dssp HHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETT
T ss_pred HHHHHHHcCCCCCEEEEeeCCcccHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 566777774 79999999999998766543 588 8899987643
No 106
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.97A {Streptomyces avermitilis}
Probab=32.48 E-value=21 Score=24.10 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhccccc
Q 039146 23 SHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTNQLRW 81 (84)
Q Consensus 23 ~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r~L~l 81 (84)
..-+.++.+....+++++++-||++ +|- ...+.+-|| .+|++...++.....+..
T Consensus 95 ~~w~~f~~~vl~~a~~~gv~~iv~l--gg~-~~~~phtrp-~~v~~~at~~~l~~~~~~ 149 (250)
T 3mnf_A 95 MRWRSFCNELLAFAHELGVELVVVL--GAL-LGDTPHTRP-VPVSGVTSDPDLARTMDL 149 (250)
T ss_dssp SCHHHHHHHHHHHHHHHTCCEEEEE--EEE-EESCCTTSC-CCEEEEECCHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEEE--eCc-cCCCCCCCC-cceEEEECCHHHHHhhhc
Confidence 3468999999999999999988875 333 223444555 678999888877766543
No 107
>2gdl_A Myeloid antimicrobial peptide 27; cathelicidin, alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=31.90 E-value=0.98 Score=21.10 Aligned_cols=12 Identities=33% Similarity=0.861 Sum_probs=8.2
Q ss_pred HHHHhhCCCCCE
Q 039146 55 RLIAKYRPTMPV 66 (84)
Q Consensus 55 ~~iS~~Rp~~pI 66 (84)
+.+-+|||++.|
T Consensus 12 rkirrfrpkvti 23 (31)
T 2gdl_A 12 RKIRRFRPKVTI 23 (31)
T ss_dssp SSCCCCTTCCHH
T ss_pred HHHHhcCCceEE
Confidence 456678888754
No 108
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=31.66 E-value=61 Score=20.10 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=24.2
Q ss_pred cEEEEecCCchHHHHH----Hhh---CCCCCEEEEecChhhhccc
Q 039146 42 SAIICFTSSGRAARLI----AKY---RPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 42 ~aIv~~T~sG~ta~~i----S~~---Rp~~pIia~t~~~~~~r~L 79 (84)
-.+...|-+|.|...+ ... .....++.++|....+.|+
T Consensus 54 ~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 98 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 98 (220)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH
T ss_pred EEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHH
Confidence 4456678899986421 222 2345788898987776654
No 109
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=31.08 E-value=89 Score=19.59 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=25.0
Q ss_pred CCcEEEEecCCchHHHH----HHhh-------CCCCCEEEEecChhhhccc
Q 039146 40 KASAIICFTSSGRAARL----IAKY-------RPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~----iS~~-------Rp~~pIia~t~~~~~~r~L 79 (84)
+--.+...|-+|.|... +.+. .+...++.++|....+.|.
T Consensus 63 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~ 113 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQT 113 (236)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHH
Confidence 33445667899999642 1111 3456688888887776554
No 110
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=31.02 E-value=1.1e+02 Score=19.73 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=23.7
Q ss_pred cEEEEecCCchHHHH-------HHhhCCCCCEEEEecChhhhccc
Q 039146 42 SAIICFTSSGRAARL-------IAKYRPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 42 ~aIv~~T~sG~ta~~-------iS~~Rp~~pIia~t~~~~~~r~L 79 (84)
-.+...|-+|.|... +.+......++.++|....+.|.
T Consensus 83 ~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~ 127 (249)
T 3ber_A 83 IIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQI 127 (249)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHH
T ss_pred EEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHH
Confidence 344556999999752 22222345688888887776554
No 111
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=30.72 E-value=62 Score=20.55 Aligned_cols=40 Identities=18% Similarity=0.063 Sum_probs=27.9
Q ss_pred cCCcEEEEecCCchHH----HHHHhhCCCCCEEEEecChhhhcc
Q 039146 39 VKASAIICFTSSGRAA----RLIAKYRPTMPVLSVVIPQLKTNQ 78 (84)
Q Consensus 39 ~~~~aIv~~T~sG~ta----~~iS~~Rp~~pIia~t~~~~~~r~ 78 (84)
-+++++|+.|.+.... ...-+..|+..|++.+.++.-...
T Consensus 70 ~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~ 113 (234)
T 2aef_A 70 RGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQ 113 (234)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEECSSGGGHHH
T ss_pred chhcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEEECCHhHHHH
Confidence 3788888887765433 344556788899999888776543
No 112
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=30.46 E-value=96 Score=19.03 Aligned_cols=42 Identities=7% Similarity=-0.101 Sum_probs=25.5
Q ss_pred HHHHHHhcCCcEEEEecCCchH-HHHHHhhCC-CCCEEEEecChh
Q 039146 32 AVRSAIKVKASAIICFTSSGRA-ARLIAKYRP-TMPVLSVVIPQL 74 (84)
Q Consensus 32 a~~~a~~~~~~aIv~~T~sG~t-a~~iS~~Rp-~~pIia~t~~~~ 74 (84)
+.........+.|+....+|.. .+.+-+. | .+|||.++....
T Consensus 36 al~~l~~~~~dlvilp~~~g~~~~~~lr~~-~~~~~ii~lt~~~~ 79 (223)
T 2hqr_A 36 GEYLMDIRNYDLVMVSDKNALSFVSRIKEK-HSSIVVLVSSDNPT 79 (223)
T ss_dssp HHHHHTTSCCSEEEECCTTHHHHHHHHHHH-CTTSEEEEEESSCC
T ss_pred HHHHHhcCCCCEEEeCCCCHHHHHHHHHhC-CCCCcEEEEECCCC
Confidence 3344455577877733345543 3445444 7 899999987643
No 113
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=30.45 E-value=93 Score=22.67 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=31.6
Q ss_pred HHHHHHHhc--CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecC
Q 039146 31 SAVRSAIKV--KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIP 72 (84)
Q Consensus 31 ~a~~~a~~~--~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~ 72 (84)
.+.++.+++ +.++||+..-+|.+.--+++ ..|.+.||++-+.
T Consensus 269 ~a~EI~eQl~~~~D~vVvpvG~GGtlaGi~~~lk~~~p~~kVigVep~ 316 (430)
T 4aec_A 269 TGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPT 316 (430)
T ss_dssp HHHHHHHHTTSCEEEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEG
T ss_pred HHHHHHHHcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 345666665 47999999999988765554 4899999999653
No 114
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=30.40 E-value=1e+02 Score=22.41 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=31.7
Q ss_pred HHHHHHhc--CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecC
Q 039146 32 AVRSAIKV--KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIP 72 (84)
Q Consensus 32 a~~~a~~~--~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~ 72 (84)
+.++.+.+ +.++||+..-+|.+..-+++ ..|.+.||++-+.
T Consensus 259 a~EI~eQl~~~~D~vVvpvGtGGtlaGi~~~lk~~~p~vrVigVep~ 305 (435)
T 1jbq_A 259 ADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPE 305 (435)
T ss_dssp HHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEET
T ss_pred HHHHHHHcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCEEEEEecC
Confidence 55666666 37999999999999765554 4799999999764
No 115
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=30.31 E-value=38 Score=23.38 Aligned_cols=32 Identities=16% Similarity=0.353 Sum_probs=25.5
Q ss_pred CCcEEEEecCCchHHHHHHhhCCCCCEEEEec
Q 039146 40 KASAIICFTSSGRAARLIAKYRPTMPVLSVVI 71 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~ 71 (84)
+++.||++--+|..-+...++.+..||+++-.
T Consensus 68 ~~DlvIvlGGDGT~L~aa~~~~~~~PilGIN~ 99 (278)
T 1z0s_A 68 NFDFIVSVGGDGTILRILQKLKRCPPIFGINT 99 (278)
T ss_dssp GSSEEEEEECHHHHHHHHTTCSSCCCEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHhCCCCcEEEECC
Confidence 57899999888888777777665599999953
No 116
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=30.12 E-value=12 Score=16.93 Aligned_cols=8 Identities=38% Similarity=1.045 Sum_probs=6.4
Q ss_pred hhCCCCCE
Q 039146 59 KYRPTMPV 66 (84)
Q Consensus 59 ~~Rp~~pI 66 (84)
||+|.+|+
T Consensus 2 RF~P~vpv 9 (27)
T 2hfr_A 2 RFWPLVPV 9 (27)
T ss_dssp CSCSSSSS
T ss_pred CccccCcc
Confidence 68898885
No 117
>4em6_D Glucose-6-phosphate isomerase; GPI, phosphoglucose isomerase phosphohexose isomerase, PHI, ssgcid; 1.90A {Brucella melitensis BV}
Probab=30.09 E-value=24 Score=26.96 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=29.3
Q ss_pred cEEEEecCCchHHHHHHhhC--------------CCCCEEEEecChhhhccccc
Q 039146 42 SAIICFTSSGRAARLIAKYR--------------PTMPVLSVVIPQLKTNQLRW 81 (84)
Q Consensus 42 ~aIv~~T~sG~ta~~iS~~R--------------p~~pIia~t~~~~~~r~L~l 81 (84)
-.+||.|.||.|.--++.+| ...-++|+|.+.+.++.+++
T Consensus 204 TLfiViSKSgtT~ET~~n~~~ar~wl~~~~~~~~~~kh~vAvTt~~~~a~~~Gi 257 (553)
T 4em6_D 204 TLIIVASKTFTTIETMTNAQTARKWVADTLGEAAVGAHFAAVSTALDKVAAFGI 257 (553)
T ss_dssp EEEEEECSSSCCHHHHHHHHHHHHHHHHHHCGGGGGGTEEEECSCHHHHHHHTC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcccccCeEEEEcCCcHHHHHcCC
Confidence 56888899999876554322 24579999998887777665
No 118
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=29.86 E-value=74 Score=17.52 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=25.6
Q ss_pred HHHhcCCcEEEEecC----Cc-hHHHHHHhhCCCCCEEEEecChh
Q 039146 35 SAIKVKASAIICFTS----SG-RAARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 35 ~a~~~~~~aIv~~T~----sG-~ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
.....+.+.|++-.. +| ...+.+-+..|..|||.++....
T Consensus 41 ~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 85 (134)
T 3f6c_A 41 RVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKND 85 (134)
T ss_dssp HHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC--
T ss_pred HHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 334456787777543 33 34556667788999999987654
No 119
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=29.43 E-value=79 Score=17.67 Aligned_cols=41 Identities=12% Similarity=-0.013 Sum_probs=25.3
Q ss_pred HHHHh-cCCcEEEEecCCc------hHHHHHHh--hCCCCCEEEEecChh
Q 039146 34 RSAIK-VKASAIICFTSSG------RAARLIAK--YRPTMPVLSVVIPQL 74 (84)
Q Consensus 34 ~~a~~-~~~~aIv~~T~sG------~ta~~iS~--~Rp~~pIia~t~~~~ 74 (84)
..... ...+.||+--.-+ ...+.+-+ ..|..|||.++....
T Consensus 43 ~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~ 92 (140)
T 3lua_A 43 SIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDN 92 (140)
T ss_dssp TTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCC
T ss_pred HHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCC
Confidence 33444 5678777754322 22345555 678999999987643
No 120
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=28.71 E-value=50 Score=18.56 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=23.3
Q ss_pred hcCCcEEEEecC------Cc-hHHHHHHhhCCCCCEEEEecChh
Q 039146 38 KVKASAIICFTS------SG-RAARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 38 ~~~~~aIv~~T~------sG-~ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
..+.+.|++--. +| ...+.+-+..|..|||.++....
T Consensus 48 ~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 91 (136)
T 3kto_A 48 SDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSD 91 (136)
T ss_dssp CTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCC
T ss_pred ccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCC
Confidence 345676776533 22 23445666678999999987654
No 121
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=28.71 E-value=1.3e+02 Score=19.99 Aligned_cols=43 Identities=19% Similarity=0.100 Sum_probs=26.7
Q ss_pred HHHHHHhcCCcEEEEe-----cCCchHHHHHHhhCCCCCEEEEecChh
Q 039146 32 AVRSAIKVKASAIICF-----TSSGRAARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 32 a~~~a~~~~~~aIv~~-----T~sG~ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
|.........+.|++. --+|......-|-.+..|||++|....
T Consensus 197 Al~~~~~~~~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI~lT~~~~ 244 (286)
T 3n0r_A 197 ALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAFPE 244 (286)
T ss_dssp HHHHHHHCCCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEEEEESCGG
T ss_pred HHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEEEEeCCHH
Confidence 3444456677877774 246655443333344999999998754
No 122
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=28.70 E-value=86 Score=17.88 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=27.9
Q ss_pred HHHHHHhcCCcEEEEecC----Cch-HHHHHHhhCCCCCEEEEecChh
Q 039146 32 AVRSAIKVKASAIICFTS----SGR-AARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 32 a~~~a~~~~~~aIv~~T~----sG~-ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
+.........+.|++--. +|. ..+.+-+..|.+|||.++....
T Consensus 43 a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 43 ALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYAD 90 (154)
T ss_dssp HHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGG
T ss_pred HHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 334445556787777543 332 3556666778999999987654
No 123
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=28.61 E-value=32 Score=23.59 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCcEEEEecCCchHH-HHHHhhCCCCCEEEEe
Q 039146 31 SAVRSAIKVKASAIICFTSSGRAA-RLIAKYRPTMPVLSVV 70 (84)
Q Consensus 31 ~a~~~a~~~~~~aIv~~T~sG~ta-~~iS~~Rp~~pIia~t 70 (84)
.+++.-...++++||+..++-.+. ..--|-+-+.|||.+.
T Consensus 77 ~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvigii 117 (274)
T 3uhf_A 77 EALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVI 117 (274)
T ss_dssp HHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEECSH
T ss_pred HHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEcCC
Confidence 344444566899999987765543 2222333479999875
No 124
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=28.57 E-value=1e+02 Score=18.61 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=24.7
Q ss_pred cCCcEEEEec--------CCchHHHHHHhhCCCCCEEEEecC
Q 039146 39 VKASAIICFT--------SSGRAARLIAKYRPTMPVLSVVIP 72 (84)
Q Consensus 39 ~~~~aIv~~T--------~sG~ta~~iS~~Rp~~pIia~t~~ 72 (84)
-+.++|++++ ..|...+.|..|.|..+|+....+
T Consensus 69 ~~~~~i~vv~~~~~~~~~PCG~Crq~l~e~~~~~~v~~~~~~ 110 (130)
T 2z3g_A 69 GNLTCIVAIGNENRGILSPCGRCRQVLLDLHPGIKAIVKDSD 110 (130)
T ss_dssp CCEEEEEEEETTTTEEECCCHHHHHHHHHHCTTCEEEEECTT
T ss_pred CceEEEEEEECCCCCccCcCHHHHHHHHHhCCCCEEEEECCC
Confidence 3556666544 557788999999999988876544
No 125
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=28.54 E-value=78 Score=19.16 Aligned_cols=39 Identities=0% Similarity=-0.050 Sum_probs=26.2
Q ss_pred CCcEEEEecCCchHH----HHHHhhCCCCCEEEEecChhhhcc
Q 039146 40 KASAIICFTSSGRAA----RLIAKYRPTMPVLSVVIPQLKTNQ 78 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta----~~iS~~Rp~~pIia~t~~~~~~r~ 78 (84)
+++.||+.+.+.... ..+.+..|...|++.+.++...+.
T Consensus 105 ~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 147 (183)
T 3c85_A 105 HVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEYPDQLEG 147 (183)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESSHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 678888766655443 344556678889988887765543
No 126
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=28.29 E-value=87 Score=17.81 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=27.6
Q ss_pred HHHHHhcCCcEEEEecC----Cc-hHHHHHHhhCCCCCEEEEecChh
Q 039146 33 VRSAIKVKASAIICFTS----SG-RAARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 33 ~~~a~~~~~~aIv~~T~----sG-~ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
.........+.|++--. +| ...+.+-+..|.+|||.++....
T Consensus 59 l~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 105 (150)
T 4e7p_A 59 IQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKR 105 (150)
T ss_dssp HHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCC
T ss_pred HHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 34445567787777543 33 23456666778999999987654
No 127
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=28.25 E-value=79 Score=17.29 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=25.9
Q ss_pred HHHHhc-CCcEEEEecC-----Cch-HHHHHHhhCCCCCEEEEecChh
Q 039146 34 RSAIKV-KASAIICFTS-----SGR-AARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 34 ~~a~~~-~~~aIv~~T~-----sG~-ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
...... ..+.|++-.. +|. ..+.+-+..|..|||.++....
T Consensus 43 ~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 90 (132)
T 2rdm_A 43 EMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAA 90 (132)
T ss_dssp HHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCC
T ss_pred HHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCcc
Confidence 334444 6787777532 332 3456666678999999987653
No 128
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=28.23 E-value=87 Score=17.80 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=26.6
Q ss_pred HHHhcCCcEEEEecC----Cc-hHHHHHHhhCCCCCEEEEecChh
Q 039146 35 SAIKVKASAIICFTS----SG-RAARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 35 ~a~~~~~~aIv~~T~----sG-~ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
.....+.+.|++.-. +| ...+.+-+..|..|||.++....
T Consensus 56 ~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 100 (152)
T 3eul_A 56 LIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDE 100 (152)
T ss_dssp HHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCC
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCC
Confidence 334456787777532 33 34456677789999999987654
No 129
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=27.80 E-value=1.3e+02 Score=20.65 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEec-CCchHHHHHHhh--CCCCCEEEEecC
Q 039146 24 HLESITSSAVRSAIKVKASAIICFT-SSGRAARLIAKY--RPTMPVLSVVIP 72 (84)
Q Consensus 24 ~~~~ia~~a~~~a~~~~~~aIv~~T-~sG~ta~~iS~~--Rp~~pIia~t~~ 72 (84)
..+-.+...+.-+.+.+.+.||+.+ .+|++++-+|.+ +-..+.+.+.+.
T Consensus 64 ~K~R~~~~~l~~a~~~G~~~vv~~s~tsGN~g~alA~aa~~~G~~~~iv~p~ 115 (342)
T 4d9b_A 64 NKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLEN 115 (342)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hHHHhHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHHHHHHhCCcEEEEEeC
Confidence 3444455556667777888888887 689998866533 224666666653
No 130
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=27.71 E-value=90 Score=17.81 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=26.6
Q ss_pred HHHHhcCCcEEEEecC----Cch-HHHHHHhhCCCCCEEEEecChh
Q 039146 34 RSAIKVKASAIICFTS----SGR-AARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 34 ~~a~~~~~~aIv~~T~----sG~-ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
........+.||+--. +|. ..+.+-+..|.+|||.++....
T Consensus 52 ~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 97 (153)
T 3hv2_A 52 QLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPD 97 (153)
T ss_dssp HHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCC
T ss_pred HHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCC
Confidence 3445567787777543 332 3446666678999999987654
No 131
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=27.71 E-value=61 Score=19.37 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEEecCCch
Q 039146 22 MSHLESITSSAVRSAIKVKASAIICFTSSGR 52 (84)
Q Consensus 22 ~~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ 52 (84)
.+..+.++.+.-.-..+...+.+|++|.+|+
T Consensus 19 ~~y~~~L~~ALkKF~ledpskw~Vcvtqssr 49 (110)
T 1k8r_B 19 GDYQKTLAIALKKFSLEDASKFIVCVSQSSR 49 (110)
T ss_dssp SCHHHHHHHHHHHHTCCCTTSEEEEEECSSS
T ss_pred hhHHHHHHHHHHHcCCCChhHeEEEEecCce
Confidence 3456777777777766677899999999875
No 132
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi glycolysis, structural genomics, center for STRU genomics of infectious diseases; HET: PG4; 1.50A {Vibrio cholerae} PDB: 3nbu_A
Probab=27.54 E-value=27 Score=26.80 Aligned_cols=40 Identities=0% Similarity=-0.061 Sum_probs=29.2
Q ss_pred cEEEEecCCchHHHHHHhh-----------C----CCCCEEEEecChhhhccccc
Q 039146 42 SAIICFTSSGRAARLIAKY-----------R----PTMPVLSVVIPQLKTNQLRW 81 (84)
Q Consensus 42 ~aIv~~T~sG~ta~~iS~~-----------R----p~~pIia~t~~~~~~r~L~l 81 (84)
-.+||.|.||.|.--++.+ . ...-++++|.+.+.+..+++
T Consensus 226 TLfiViSKSgtT~ET~~n~~~ar~wl~~~~~~~~~~~khfVavTt~~~~~~~fgi 280 (574)
T 3hjb_A 226 TLFLVASKTFTTQETMTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEFGI 280 (574)
T ss_dssp EEEEEECSSSCCHHHHHHHHHHHHHHHHHHCSGGGGGGTEEEESSCHHHHHHHTC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCcchhcCEEEEEcCChHHHHHcCC
Confidence 5688889999987665533 2 23568999988887776665
No 133
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=27.16 E-value=1.2e+02 Score=19.23 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=22.3
Q ss_pred hcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecC
Q 039146 38 KVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIP 72 (84)
Q Consensus 38 ~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~ 72 (84)
..++++||. -|.||.++-+. .+.||+-+-.+
T Consensus 49 ~~~~dVIIS---RGgta~~lr~~-~~iPVV~I~~s 79 (196)
T 2q5c_A 49 QDEVDAIIS---RGATSDYIKKS-VSIPSISIKVT 79 (196)
T ss_dssp TTTCSEEEE---EHHHHHHHHTT-CSSCEEEECCC
T ss_pred cCCCeEEEE---CChHHHHHHHh-CCCCEEEEcCC
Confidence 457775553 58899999876 68999977443
No 134
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=27.03 E-value=1.1e+02 Score=20.85 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=26.1
Q ss_pred CCcEEEEecCCchHHHHHHhh-----CCCCCEEEEecC
Q 039146 40 KASAIICFTSSGRAARLIAKY-----RPTMPVLSVVIP 72 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~iS~~-----Rp~~pIia~t~~ 72 (84)
+.++||+..-+|.++.-++++ .|. .||++.+.
T Consensus 189 ~~d~vv~~vG~GGt~~Gi~~~~k~~g~~~-~vigve~~ 225 (338)
T 1tzj_A 189 KFDYVVVCSVTGSTQAGMVVGFAADGRAD-RVIGVDAS 225 (338)
T ss_dssp CCSEEEEEESSSHHHHHHHHHHHTTTCGG-GEEEEECS
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhhCCCC-eEEEEEcc
Confidence 579999999999998877653 677 99999764
No 135
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=27.02 E-value=93 Score=17.74 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=24.6
Q ss_pred HhcCCcEEEEecC----Cch-HHHHHHhhCCCCCEEEEecChh
Q 039146 37 IKVKASAIICFTS----SGR-AARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 37 ~~~~~~aIv~~T~----sG~-ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
.....+.|++-.. +|. ..+.+.+..|.+|||.++....
T Consensus 44 ~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 44 SADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp CTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGG
T ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 3445777777543 232 3456666678999999987554
No 136
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=26.90 E-value=1e+02 Score=21.04 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=27.7
Q ss_pred HHHHHhcCCcEEEEecCCch-----HHHHHHhhCCCCCEEEEec
Q 039146 33 VRSAIKVKASAIICFTSSGR-----AARLIAKYRPTMPVLSVVI 71 (84)
Q Consensus 33 ~~~a~~~~~~aIv~~T~sG~-----ta~~iS~~Rp~~pIia~t~ 71 (84)
-.+.++-+.++|+++-++|. .++.+++.+-+.||+++..
T Consensus 199 ~~~~~D~~T~~I~l~~E~~~~~~~~~~~~~~~~~~~KPVv~~k~ 242 (297)
T 2yv2_A 199 KLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIA 242 (297)
T ss_dssp HHHHTCTTCSEEEEEECSSSSHHHHHHHHHHTTSCCSCEEEEES
T ss_pred HHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHhccCCCCEEEEEe
Confidence 34566778899999999875 3444444456789998853
No 137
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=26.54 E-value=78 Score=20.60 Aligned_cols=40 Identities=28% Similarity=0.212 Sum_probs=25.4
Q ss_pred CCcEEEEecCCchHHH-HHHhhCCCCCEEEEecChhhhccc
Q 039146 40 KASAIICFTSSGRAAR-LIAKYRPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~-~iS~~Rp~~pIia~t~~~~~~r~L 79 (84)
+--.+...|-+|.|.. .+.-..+...++.++|....+.|+
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~ 72 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQV 72 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHH
Confidence 4445666788998864 222233466788888887766553
No 138
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=26.29 E-value=61 Score=21.62 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=24.6
Q ss_pred HHHHHhcCCcEEEEecCCchH-HHHHHhhCCCCCEEEE
Q 039146 33 VRSAIKVKASAIICFTSSGRA-ARLIAKYRPTMPVLSV 69 (84)
Q Consensus 33 ~~~a~~~~~~aIv~~T~sG~t-a~~iS~~Rp~~pIia~ 69 (84)
++.....++++||+..++..+ +..--+-+-.+||+.+
T Consensus 58 ~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi 95 (267)
T 2gzm_A 58 TEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGV 95 (267)
T ss_dssp HHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee
Confidence 333445689999998777764 4444444457999985
No 139
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=26.23 E-value=83 Score=16.90 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=24.8
Q ss_pred HhcCCcEEEEecC----Cch-HHHHHHhhCCCCCEEEEecChh
Q 039146 37 IKVKASAIICFTS----SGR-AARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 37 ~~~~~~aIv~~T~----sG~-ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
.....+.|++--. +|. ..+.+.+..|..||+.++....
T Consensus 44 ~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (120)
T 1tmy_A 44 KELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQ 86 (120)
T ss_dssp HHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTC
T ss_pred HhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 3446777776532 343 3456666679999999987644
No 140
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=26.04 E-value=1.4e+02 Score=19.84 Aligned_cols=37 Identities=8% Similarity=0.164 Sum_probs=24.7
Q ss_pred EEEEecCCchHHH----HHHhhC---CCCCEEEEecChhhhccc
Q 039146 43 AIICFTSSGRAAR----LIAKYR---PTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 43 aIv~~T~sG~ta~----~iS~~R---p~~pIia~t~~~~~~r~L 79 (84)
.+...|-+|.|.. .+.+.. +...++.++|....+.|+
T Consensus 48 lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 91 (395)
T 3pey_A 48 IAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQT 91 (395)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHH
Confidence 4456799999964 233332 466788898988776654
No 141
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=26.01 E-value=86 Score=17.00 Aligned_cols=39 Identities=8% Similarity=0.045 Sum_probs=25.3
Q ss_pred HHhcCCcEEEEecC----Cch-HHHHHHhhCCCCCEEEEecChh
Q 039146 36 AIKVKASAIICFTS----SGR-AARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 36 a~~~~~~aIv~~T~----sG~-ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
......+.|++--. +|. ..+.+.+..|..|||.++....
T Consensus 43 ~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (124)
T 1srr_A 43 VTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGE 86 (124)
T ss_dssp HHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred HhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccCc
Confidence 33456787776532 443 3556666679999999987543
No 142
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=25.99 E-value=1.3e+02 Score=19.14 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHHHHhcCCcEEEEecC----CchH-HHHHHhhCCCCCEEEEecChh
Q 039146 33 VRSAIKVKASAIICFTS----SGRA-ARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 33 ~~~a~~~~~~aIv~~T~----sG~t-a~~iS~~Rp~~pIia~t~~~~ 74 (84)
.........+.|++.-. +|.. .+.+-+ .|..|||.++....
T Consensus 74 l~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~-~~~~~iI~lt~~~~ 119 (249)
T 3q9s_A 74 LIKAREDHPDLILLDLGLPDFDGGDVVQRLRK-NSALPIIVLTARDT 119 (249)
T ss_dssp HHHHHHSCCSEEEEECCSCHHHHHHHHHHHHT-TCCCCEEEEESCCS
T ss_pred HHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHc-CCCCCEEEEECCCC
Confidence 34445566787777644 3332 334444 68999999987653
No 143
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=25.79 E-value=1.2e+02 Score=18.57 Aligned_cols=33 Identities=9% Similarity=0.281 Sum_probs=24.1
Q ss_pred CcEEEEe--------cCCchHHHHHHhhC-CCCCEEEEecCh
Q 039146 41 ASAIICF--------TSSGRAARLIAKYR-PTMPVLSVVIPQ 73 (84)
Q Consensus 41 ~~aIv~~--------T~sG~ta~~iS~~R-p~~pIia~t~~~ 73 (84)
.++|++. +..|...+.|..|. |..+|+....+.
T Consensus 79 i~~i~vv~~~~~~~~~PCG~CRq~l~e~~~~~~~v~~~~~~g 120 (142)
T 1r5t_A 79 WKCMVICGDSEDQCVSPCGVCRQFINEFVVKDFPIVMLNSTG 120 (142)
T ss_dssp CCEEEEEESCSSSCCCCCHHHHHHHHTTSCTTCEEEEECSSS
T ss_pred eEEEEEEeCCCCcccCHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 5566665 56788889999997 678888765544
No 144
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=25.73 E-value=38 Score=22.97 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCcEEEEecCCchH-H-HHHHhhCCCCCEEEEe
Q 039146 31 SAVRSAIKVKASAIICFTSSGRA-A-RLIAKYRPTMPVLSVV 70 (84)
Q Consensus 31 ~a~~~a~~~~~~aIv~~T~sG~t-a-~~iS~~Rp~~pIia~t 70 (84)
.+++--...++++||+..++-.. + ..+...=|..|||.+.
T Consensus 60 ~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvigii 101 (268)
T 3out_A 60 QTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVIDVI 101 (268)
T ss_dssp HHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEEHH
T ss_pred HHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEecc
Confidence 34444456699999998776654 3 2222222589999853
No 145
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=25.70 E-value=49 Score=21.62 Aligned_cols=40 Identities=30% Similarity=0.276 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCcEEEEecCCch-----H---HHHHHhh-CCCCCEEEEe
Q 039146 29 TSSAVRSAIKVKASAIICFTSSGR-----A---ARLIAKY-RPTMPVLSVV 70 (84)
Q Consensus 29 a~~a~~~a~~~~~~aIv~~T~sG~-----t---a~~iS~~-Rp~~pIia~t 70 (84)
...+++++.+.++++|. |.+|. + .+.+.+. .+++||++..
T Consensus 134 ~~~~a~~a~eaGad~I~--tstg~~~gga~~~~i~~v~~~v~~~ipVia~G 182 (225)
T 1mzh_A 134 IKKAVEICIEAGADFIK--TSTGFAPRGTTLEEVRLIKSSAKGRIKVKASG 182 (225)
T ss_dssp HHHHHHHHHHHTCSEEE--CCCSCSSSCCCHHHHHHHHHHHTTSSEEEEES
T ss_pred HHHHHHHHHHhCCCEEE--ECCCCCCCCCCHHHHHHHHHHhCCCCcEEEEC
Confidence 45567888899999884 44432 3 3344432 4589999874
No 146
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=25.39 E-value=90 Score=17.01 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=24.6
Q ss_pred HHHHHHhcCCcEEEEecC----CchHH-HHHHhhCCCCCEEEEecChh
Q 039146 32 AVRSAIKVKASAIICFTS----SGRAA-RLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 32 a~~~a~~~~~~aIv~~T~----sG~ta-~~iS~~Rp~~pIia~t~~~~ 74 (84)
+.......+.+.|++.-. +|... +.+ +-++..|||.++....
T Consensus 38 al~~~~~~~~dlii~D~~~p~~~g~~~~~~l-r~~~~~~ii~~t~~~~ 84 (120)
T 3f6p_A 38 AVEMVEELQPDLILLDIMLPNKDGVEVCREV-RKKYDMPIIMLTAKDS 84 (120)
T ss_dssp HHHHHHTTCCSEEEEETTSTTTHHHHHHHHH-HTTCCSCEEEEEESSC
T ss_pred HHHHHhhCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCCCEEEEECCCC
Confidence 334445667787777543 33322 333 3356899999987543
No 147
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=25.32 E-value=1.3e+02 Score=18.98 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=25.5
Q ss_pred HHhcCCcEEEEe--------cCCchHHHHHHhhCCCCCEEEEecC
Q 039146 36 AIKVKASAIICF--------TSSGRAARLIAKYRPTMPVLSVVIP 72 (84)
Q Consensus 36 a~~~~~~aIv~~--------T~sG~ta~~iS~~Rp~~pIia~t~~ 72 (84)
...-+..+|++. +..|.--+.|+-|.|..+|+....+
T Consensus 90 ~G~~~~~ai~vv~~~~~~~~~PCG~CRQvL~Ef~~~~~vil~~~~ 134 (158)
T 3oj6_A 90 AGATKLTHIVAIANEGRGILSPCGRCRQVLADLHPGIKAIVIGKE 134 (158)
T ss_dssp TTCCCEEEEEEEETTTTEEECCCHHHHHHHHHHSTTCEEEECCSS
T ss_pred hCCCceEEEEEEeCCCCCcCCCCHHHHHHHHHhCCCCEEEEEcCC
Confidence 333355666655 3457778899999999998866544
No 148
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=25.22 E-value=1e+02 Score=21.69 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=23.5
Q ss_pred HHHHHHhcCCcEEEEecCCch-------H---HHHHHh-hCCCCCEEEE
Q 039146 32 AVRSAIKVKASAIICFTSSGR-------A---ARLIAK-YRPTMPVLSV 69 (84)
Q Consensus 32 a~~~a~~~~~~aIv~~T~sG~-------t---a~~iS~-~Rp~~pIia~ 69 (84)
-+..+.+.++++|++....|+ + ...+.+ .++++|||+-
T Consensus 238 ~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~ 286 (370)
T 1gox_A 238 DARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLD 286 (370)
T ss_dssp HHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEE
T ss_pred HHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEE
Confidence 446777889999888543343 1 122323 4558999974
No 149
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=25.20 E-value=88 Score=21.66 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCCc----------hHHHHHHhhCCCCCEEE
Q 039146 26 ESITSSAVRSAIKVKASAIICFTSSG----------RAARLIAKYRPTMPVLS 68 (84)
Q Consensus 26 ~~ia~~a~~~a~~~~~~aIv~~T~sG----------~ta~~iS~~Rp~~pIia 68 (84)
--..+++++.|++.++..|+-++.++ ...+.+++ +..+||..
T Consensus 28 ~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~-~~~VPVal 79 (286)
T 1gvf_A 28 AETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYST-TYNMPLAL 79 (286)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHH-HTTSCBEE
T ss_pred HHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHH-hCCCcEEE
Confidence 35678899999999999999988865 23344444 45688654
No 150
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=25.07 E-value=1.3e+02 Score=18.90 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=27.1
Q ss_pred HHHHHhcCCcEEEEec----CCch-HHHHHHhhCCCCCEEEEecChh
Q 039146 33 VRSAIKVKASAIICFT----SSGR-AARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 33 ~~~a~~~~~~aIv~~T----~sG~-ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
.........+.|++.- .+|. ..+.+-+..|..|||.++....
T Consensus 60 l~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 106 (250)
T 3r0j_A 60 LDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDS 106 (250)
T ss_dssp HHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTT
T ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 3344455678777753 2443 3456666678999999987653
No 151
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*
Probab=25.06 E-value=1.4e+02 Score=20.62 Aligned_cols=50 Identities=16% Similarity=-0.007 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhh--CCCCCEEEEecCh
Q 039146 24 HLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKY--RPTMPVLSVVIPQ 73 (84)
Q Consensus 24 ~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~--Rp~~pIia~t~~~ 73 (84)
..+-.+...+..+.+.+.+.+|+-+.+|.+++.+|.+ +-..+.+.+.+..
T Consensus 81 fK~R~a~~~i~~a~~~g~~~vv~~~ssGN~g~a~A~aa~~~G~~~~iv~p~~ 132 (388)
T 1v8z_A 81 HKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAE 132 (388)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 3455555555666777777777767889998865532 4467777776653
No 152
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=24.72 E-value=1.3e+02 Score=20.66 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhh--CCCCCEEEEecCh
Q 039146 24 HLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKY--RPTMPVLSVVIPQ 73 (84)
Q Consensus 24 ~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~--Rp~~pIia~t~~~ 73 (84)
..+-.+...+..+.+.+.+.||+. .||.+++.+|.+ +-..+.+.+.++.
T Consensus 62 ~KdR~a~~~l~~a~~~g~~~vv~~-SsGN~g~alA~~a~~~G~~~~i~~p~~ 112 (352)
T 2zsj_A 62 FKDRGMTLAISKAVEAGKRAVICA-STGNTSASAAAYAARAGLRAYVLLPKG 112 (352)
T ss_dssp TTHHHHHHHHHHHHHTTCCEEEEC-CSSHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEe-CCchHHHHHHHHHHhcCCcEEEEECCC
Confidence 345555556666667777878876 689988865532 3456767666654
No 153
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=24.63 E-value=97 Score=17.12 Aligned_cols=39 Identities=13% Similarity=-0.100 Sum_probs=25.7
Q ss_pred HHhcCCcEEEEecC----Cc-hHHHHHHhhCCCCCEEEEecChh
Q 039146 36 AIKVKASAIICFTS----SG-RAARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 36 a~~~~~~aIv~~T~----sG-~ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
......+.|++-.. +| ...+.+-+..|..|||.++....
T Consensus 47 l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 90 (137)
T 3hdg_A 47 FGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSE 90 (137)
T ss_dssp HHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCC
T ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcC
Confidence 34456787777543 33 24456667779999999987654
No 154
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=24.61 E-value=1e+02 Score=17.47 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=27.2
Q ss_pred HHHHHhcCCcEEEEecC----Cc-hHHHHHHhhCCCCCEEEEecChh
Q 039146 33 VRSAIKVKASAIICFTS----SG-RAARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 33 ~~~a~~~~~~aIv~~T~----sG-~ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
.........+.||+--. +| ...+.+-+..|..|||+++....
T Consensus 44 ~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 90 (153)
T 3cz5_A 44 YRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQG 90 (153)
T ss_dssp HHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCCS
T ss_pred HHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 34445556787777532 33 23556666778999999987643
No 155
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=24.33 E-value=1.2e+02 Score=20.86 Aligned_cols=49 Identities=27% Similarity=0.320 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhh--CCCCCEEEEecCh
Q 039146 24 HLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKY--RPTMPVLSVVIPQ 73 (84)
Q Consensus 24 ~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~--Rp~~pIia~t~~~ 73 (84)
..+--+...+..+.+.+.+.||+. .+|.+++.+|.+ +-..+.+.+.++.
T Consensus 60 ~KdR~a~~~l~~a~~~g~~~vv~~-SsGN~g~alA~~a~~~G~~~~iv~p~~ 110 (351)
T 3aey_A 60 FKDRGMTLAVSKAVEGGAQAVACA-STGNTAASAAAYAARAGILAIVVLPAG 110 (351)
T ss_dssp TTHHHHHHHHHHHHHTTCSEEEES-CSSHHHHHHHHHHHHHTSEEEEEEETT
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEe-CCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 345555555666667777878776 589888866532 3456767666654
No 156
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/PR initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus}
Probab=24.27 E-value=33 Score=25.07 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=24.6
Q ss_pred EEEEecCCchHHHHHHhhC-------------CCCCEEEEecC-----hhhhcccc
Q 039146 43 AIICFTSSGRAARLIAKYR-------------PTMPVLSVVIP-----QLKTNQLR 80 (84)
Q Consensus 43 aIv~~T~sG~ta~~iS~~R-------------p~~pIia~t~~-----~~~~r~L~ 80 (84)
.+|+.|.||.|.-.++.+| +...++|+|.+ .+.++..+
T Consensus 119 lviviSKSGtT~ET~~~~~~ar~~l~~~~G~~~~~~~vavT~~~~s~L~~~a~~~G 174 (415)
T 1zzg_A 119 LVNAVSKSGSTAETLAGLAVFLKWLKAHLGEDWRRHLVVTTDPKEGPLRAFAEREG 174 (415)
T ss_dssp EEEEEESSSCCHHHHHHHHHHHHHHHHHHGGGGGGGEEEEECSSSSHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHhcCccccCeEEEEeCCCCChHHHHHHHhC
Confidence 7888899998764333221 23679999887 45554443
No 157
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=24.16 E-value=1e+02 Score=21.09 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=30.7
Q ss_pred HHHHHHHhc-----CCcEEEEecCCchHHHHHHh----hCCCCCEEEEecC
Q 039146 31 SAVRSAIKV-----KASAIICFTSSGRAARLIAK----YRPTMPVLSVVIP 72 (84)
Q Consensus 31 ~a~~~a~~~-----~~~aIv~~T~sG~ta~~iS~----~Rp~~pIia~t~~ 72 (84)
.+.++.+.+ +.++||+..-+|.|+.-+++ ..|...||++-+.
T Consensus 178 ~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~ 228 (341)
T 1f2d_A 178 FADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDAS 228 (341)
T ss_dssp HHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECS
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHHHHHhcCCCceEEEEEec
Confidence 344455443 47999999999999775554 4688999999664
No 158
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=24.14 E-value=1.2e+02 Score=20.55 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=25.6
Q ss_pred cEEEEecCCchHHHH----HHhh---CCCCCEEEEecChhhhccc
Q 039146 42 SAIICFTSSGRAARL----IAKY---RPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 42 ~aIv~~T~sG~ta~~----iS~~---Rp~~pIia~t~~~~~~r~L 79 (84)
-.+...|-+|.|... +... .+...++.++|....+.|+
T Consensus 77 ~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~ 121 (410)
T 2j0s_A 77 VIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI 121 (410)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHH
Confidence 456678899999542 2222 2567889999988776654
No 159
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=24.12 E-value=40 Score=24.09 Aligned_cols=21 Identities=14% Similarity=0.261 Sum_probs=13.6
Q ss_pred HHHHHHHhcCCcEEEEecCCc
Q 039146 31 SAVRSAIKVKASAIICFTSSG 51 (84)
Q Consensus 31 ~a~~~a~~~~~~aIv~~T~sG 51 (84)
..+..+.+.++++|++.-..|
T Consensus 221 e~A~~l~~aGad~I~V~g~GG 241 (365)
T 3sr7_A 221 KTIQTAIDLGVKTVDISGRGG 241 (365)
T ss_dssp HHHHHHHHHTCCEEECCCBC-
T ss_pred HHHHHHHHcCCCEEEEeCCCC
Confidence 345556688999988754433
No 160
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=24.03 E-value=76 Score=21.28 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=25.7
Q ss_pred HHHHHHh-cCCcEEEEecCCchH-HHHHHhhCCCCCEEEEe
Q 039146 32 AVRSAIK-VKASAIICFTSSGRA-ARLIAKYRPTMPVLSVV 70 (84)
Q Consensus 32 a~~~a~~-~~~~aIv~~T~sG~t-a~~iS~~Rp~~pIia~t 70 (84)
+++.... .++++||+..+|... +..--+-+-..||+++.
T Consensus 57 ~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigii 97 (272)
T 1zuw_A 57 LTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVI 97 (272)
T ss_dssp HHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEESH
T ss_pred HHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEccc
Confidence 3444445 789999998777764 34344444578999864
No 161
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=23.83 E-value=1e+02 Score=17.08 Aligned_cols=40 Identities=15% Similarity=0.044 Sum_probs=25.5
Q ss_pred HHHhcCCcEEEEec----CCch-HHHHHHhhCCCCCEEEEecChh
Q 039146 35 SAIKVKASAIICFT----SSGR-AARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 35 ~a~~~~~~aIv~~T----~sG~-ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
.....+.+.|++-- .+|. ..+.+-+..|..|||.++....
T Consensus 44 ~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 88 (133)
T 3b2n_A 44 LIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKR 88 (133)
T ss_dssp HHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCC
T ss_pred HHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCC
Confidence 33445678777643 2443 3456666678999999987654
No 162
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=23.67 E-value=1e+02 Score=17.12 Aligned_cols=41 Identities=5% Similarity=0.085 Sum_probs=23.9
Q ss_pred HHHHhcCCcEEEEecC----Cc-hHHHHHHhhC--CCCCEEEEecChh
Q 039146 34 RSAIKVKASAIICFTS----SG-RAARLIAKYR--PTMPVLSVVIPQL 74 (84)
Q Consensus 34 ~~a~~~~~~aIv~~T~----sG-~ta~~iS~~R--p~~pIia~t~~~~ 74 (84)
......+.+.|++--. +| ...+.+-+.. |..|||.++....
T Consensus 40 ~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~ 87 (140)
T 3n53_A 40 EQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEH 87 (140)
T ss_dssp HHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC--
T ss_pred HHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCC
Confidence 3334556787777643 23 2344555554 8999999987643
No 163
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.49 E-value=1.1e+02 Score=17.48 Aligned_cols=43 Identities=28% Similarity=0.256 Sum_probs=25.7
Q ss_pred HHHHHHhcCCcEEEEecC----CchH-HHHHHhhC--CCCCEEEEecChh
Q 039146 32 AVRSAIKVKASAIICFTS----SGRA-ARLIAKYR--PTMPVLSVVIPQL 74 (84)
Q Consensus 32 a~~~a~~~~~~aIv~~T~----sG~t-a~~iS~~R--p~~pIia~t~~~~ 74 (84)
+.......+.+.|++-.. +|.. .+.+-+.. |.+|||+++....
T Consensus 43 al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~ 92 (154)
T 3gt7_A 43 AVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSD 92 (154)
T ss_dssp HHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCS
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCC
Confidence 344455667888888643 3432 33343332 7899999986543
No 164
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=23.46 E-value=1.1e+02 Score=17.11 Aligned_cols=37 Identities=24% Similarity=0.167 Sum_probs=25.3
Q ss_pred hcCCcEEEEecC----Cc-hHHHHHHhhCCCCCEEEEecChh
Q 039146 38 KVKASAIICFTS----SG-RAARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 38 ~~~~~aIv~~T~----sG-~ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
....+.|++-.. +| ...+.+-+..|..|||.++....
T Consensus 47 ~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 88 (143)
T 3jte_A 47 CNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGD 88 (143)
T ss_dssp TTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTC
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 356787777543 33 33456667789999999987654
No 165
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Probab=23.36 E-value=1.6e+02 Score=20.57 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=26.9
Q ss_pred CCcEEEEecCCchHHHHHH-hh--CCCCCEEEEecCh
Q 039146 40 KASAIICFTSSGRAARLIA-KY--RPTMPVLSVVIPQ 73 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~iS-~~--Rp~~pIia~t~~~ 73 (84)
..++||+..-+|.++--++ .+ .|.+.||++.+..
T Consensus 222 ~~d~vvvpvG~GG~~~Gi~~~~~~~~~~~vigVe~~~ 258 (396)
T 1qop_B 222 LPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGG 258 (396)
T ss_dssp CCSEEEEECSSSHHHHHHHGGGTTCTTSEEEEEEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4689999999999988776 33 4888999987643
No 166
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=23.24 E-value=1.3e+02 Score=18.13 Aligned_cols=38 Identities=11% Similarity=0.013 Sum_probs=24.1
Q ss_pred cEEEEecCCchHHH----HHHhh------CCCCCEEEEecChhhhccc
Q 039146 42 SAIICFTSSGRAAR----LIAKY------RPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 42 ~aIv~~T~sG~ta~----~iS~~------Rp~~pIia~t~~~~~~r~L 79 (84)
-.+...|-+|.|.. .+.+. .+...++.++|....+.|+
T Consensus 41 ~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~ 88 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQV 88 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHH
Confidence 44556789999964 22232 2455688888887766554
No 167
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=23.15 E-value=1.4e+02 Score=22.74 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=26.2
Q ss_pred EEEEecCCchHHHHHHhh-CCCCCEEEEecChhhhcccc
Q 039146 43 AIICFTSSGRAARLIAKY-RPTMPVLSVVIPQLKTNQLR 80 (84)
Q Consensus 43 aIv~~T~sG~ta~~iS~~-Rp~~pIia~t~~~~~~r~L~ 80 (84)
.+.-+|.||.|-.+..-+ +-+.|++.+++|...+.+|.
T Consensus 32 ~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~ 70 (664)
T 1c4o_A 32 TLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLA 70 (664)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHH
T ss_pred EEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHH
Confidence 466678888866543222 22558999999999887763
No 168
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=23.13 E-value=56 Score=21.92 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=24.5
Q ss_pred cEEEEecCCchHHHH----HHhh---CCCCCEEEEecChhhhccc
Q 039146 42 SAIICFTSSGRAARL----IAKY---RPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 42 ~aIv~~T~sG~ta~~----iS~~---Rp~~pIia~t~~~~~~r~L 79 (84)
-.+...|-+|.|... +.+. ....+++.++|....+.|+
T Consensus 61 ~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~ 105 (394)
T 1fuu_A 61 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 105 (394)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHH
Confidence 445667888999542 2222 2456888898887776553
No 169
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=22.83 E-value=1.1e+02 Score=17.11 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=22.8
Q ss_pred cCCcEEEEecC-----Cch-HHHHHHhhCCCCCEEEEecChh
Q 039146 39 VKASAIICFTS-----SGR-AARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 39 ~~~~aIv~~T~-----sG~-ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
...+.|++-.. +|. ..+.+-+. |..|||.++....
T Consensus 49 ~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii~ls~~~~ 89 (140)
T 3h5i_A 49 WYPDLILMDIELGEGMDGVQTALAIQQI-SELPVVFLTAHTE 89 (140)
T ss_dssp CCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEEEEESSSS
T ss_pred CCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEEEEECCCC
Confidence 56787877543 332 33445444 8999999987654
No 170
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=22.81 E-value=1.2e+02 Score=17.70 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=28.6
Q ss_pred hcCCcEEEEecCCchHHHH----HHhhCCCCCEEEEecChhhhcc
Q 039146 38 KVKASAIICFTSSGRAARL----IAKYRPTMPVLSVVIPQLKTNQ 78 (84)
Q Consensus 38 ~~~~~aIv~~T~sG~ta~~----iS~~Rp~~pIia~t~~~~~~r~ 78 (84)
--+++++|+.|.+...... .-+..|...|++...++.....
T Consensus 69 i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~ 113 (153)
T 1id1_A 69 IDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNK 113 (153)
T ss_dssp TTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHH
T ss_pred hhhCCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 3478989988877654443 2344588999999888776543
No 171
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=22.79 E-value=1e+02 Score=21.62 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCc----------hHHHHHHhhCCCCCEEE
Q 039146 27 SITSSAVRSAIKVKASAIICFTSSG----------RAARLIAKYRPTMPVLS 68 (84)
Q Consensus 27 ~ia~~a~~~a~~~~~~aIv~~T~sG----------~ta~~iS~~Rp~~pIia 68 (84)
-..+++++.|++.++..|+-++.++ ...+.+++ +.+||..
T Consensus 28 e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~--~~VPVal 77 (305)
T 1rvg_A 28 EFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKE--ARVPVAV 77 (305)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH--CSSCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHh--CCCcEEE
Confidence 5678899999999999999888754 23444555 7888654
No 172
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=22.66 E-value=1.4e+02 Score=20.64 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhh--CCCCCEEEEecCh
Q 039146 24 HLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKY--RPTMPVLSVVIPQ 73 (84)
Q Consensus 24 ~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~--Rp~~pIia~t~~~ 73 (84)
..+--+...+..+.+.+.+.||+. .+|.+++.+|.+ +-..+.+.+.++.
T Consensus 68 fKdR~a~~~l~~a~~~g~~~vv~a-SsGN~g~alA~~a~~~G~~~~i~~p~~ 118 (360)
T 2d1f_A 68 FKDRGMTMAVTDALAHGQRAVLCA-STGNTSASAAAYAARAGITCAVLIPQG 118 (360)
T ss_dssp TTHHHHHHHHHHHHHTTCSEEEEC-CSSHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 345555555666667777878876 589988855432 3467777776654
No 173
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=22.60 E-value=75 Score=22.71 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhccccc
Q 039146 21 PMSHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTNQLRW 81 (84)
Q Consensus 21 ~~~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r~L~l 81 (84)
|...-+.++.+....+++++++-||++.- --+ -+-..|| .||++...+++....+..
T Consensus 152 P~~~w~~fa~~vl~~a~~~gV~~vvtLgg--lp~-~vphtRp-~~V~~~at~~el~~~~~~ 208 (351)
T 2wam_A 152 PDLKWERFITAVRLLAERLGVRQTIGLGT--VPM-AVPHTRP-ITMTAHSNNRELISDFQP 208 (351)
T ss_dssp CSBCHHHHHHHHHHHHHHTTCCEEEEEEE--EEE-SCCTTSC-CCEEEEESSGGGGTTSCC
T ss_pred ChhHHHHHHHHHHHHHHHhCCCEEEEEec--ccC-CCCCccC-cceEEEECCHHHHHhcCC
Confidence 33456789999999999999998887642 111 1223565 448988888888766653
No 174
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.57 E-value=1.1e+02 Score=16.81 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=23.8
Q ss_pred HHHHHhcCCcEEEEec----CCchHH-HHHHhh--CCCCCEEEEecCh
Q 039146 33 VRSAIKVKASAIICFT----SSGRAA-RLIAKY--RPTMPVLSVVIPQ 73 (84)
Q Consensus 33 ~~~a~~~~~~aIv~~T----~sG~ta-~~iS~~--Rp~~pIia~t~~~ 73 (84)
.......+.+.|++-- .+|... +.+-+. .|..|||.+|...
T Consensus 39 l~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 39 LEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 3444556778777743 244333 333222 3689999998754
No 175
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A
Probab=22.53 E-value=1.3e+02 Score=21.62 Aligned_cols=49 Identities=10% Similarity=-0.052 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHh--hCCCCCEEEEecCh
Q 039146 25 LESITSSAVRSAIKVKASAIICFTSSGRAARLIAK--YRPTMPVLSVVIPQ 73 (84)
Q Consensus 25 ~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~--~Rp~~pIia~t~~~ 73 (84)
.+--+...+..+.+.+.+.+|+.+.+|.+++.+|. .+-..+.+.+.+..
T Consensus 113 K~R~a~~~~~~a~~~g~~~vI~~~ssGNhG~A~A~aaa~~G~~~~I~mp~~ 163 (422)
T 2o2e_A 113 KINNVLGQALLARRMGKTRVIAETGAGQHGVATATACALLGLDCVIYMGGI 163 (422)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHH
T ss_pred HHHHHHHHHHHHHHcCCCeEEEecCccHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 44445555666777777777777788998885553 24456666666654
No 176
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Probab=22.27 E-value=1.3e+02 Score=21.08 Aligned_cols=48 Identities=15% Similarity=-0.036 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhh--CCCCCEEEEecC
Q 039146 25 LESITSSAVRSAIKVKASAIICFTSSGRAARLIAKY--RPTMPVLSVVIP 72 (84)
Q Consensus 25 ~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~--Rp~~pIia~t~~ 72 (84)
.+--+...+..+.+.+.+.+|+-+.+|.+++.+|.+ +-..+.+.+.+.
T Consensus 86 K~R~a~~~~~~a~~~g~~~vi~e~ssGNhg~a~A~aa~~~G~~~~i~mp~ 135 (396)
T 1qop_B 86 KTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGA 135 (396)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEH
T ss_pred HHHHHHHHHHHHHHcCcCEEEEecCchHHHHHHHHHHHHCCCcEEEEEcC
Confidence 444455555567777777777767789988865532 345666666665
No 177
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=22.14 E-value=1.5e+02 Score=19.96 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=24.8
Q ss_pred cEEEEecCCchHHHH----HHhhC---CCCCEEEEecChhhhccc
Q 039146 42 SAIICFTSSGRAARL----IAKYR---PTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 42 ~aIv~~T~sG~ta~~----iS~~R---p~~pIia~t~~~~~~r~L 79 (84)
-.+...|-+|.|... +...+ ....++.++|....+.|+
T Consensus 61 ~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 105 (400)
T 1s2m_A 61 ILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQT 105 (400)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHH
Confidence 455667999999542 22332 455788888887776554
No 178
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=21.95 E-value=83 Score=19.53 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=23.9
Q ss_pred cEEEEecCCchHHHH----HHhh---CCCCCEEEEecChhhhccc
Q 039146 42 SAIICFTSSGRAARL----IAKY---RPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 42 ~aIv~~T~sG~ta~~----iS~~---Rp~~pIia~t~~~~~~r~L 79 (84)
-.+...|-+|.|... +.+. ++...++.++|....+.|.
T Consensus 44 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 88 (219)
T 1q0u_A 44 MVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQI 88 (219)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHH
Confidence 345667888888742 2222 2456788888887776554
No 179
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=21.94 E-value=1.5e+02 Score=18.26 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=26.0
Q ss_pred HhcCCcEEEEe-------cCCchHHHHHHhhC-CCCCEEEEecC
Q 039146 37 IKVKASAIICF-------TSSGRAARLIAKYR-PTMPVLSVVIP 72 (84)
Q Consensus 37 ~~~~~~aIv~~-------T~sG~ta~~iS~~R-p~~pIia~t~~ 72 (84)
..-..++|++. +..|.--+.|+.|. |..+|+....+
T Consensus 75 G~~~~~aiav~~~~~~~~~PCG~CRQ~l~E~~~~~~~V~~~~~~ 118 (141)
T 2d30_A 75 GDKEFVAIAIVADTKRPVPPCGACRQVMVELCKQDTKVYLSNLH 118 (141)
T ss_dssp TCCCEEEEEEEESCSSCCCCCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred CCCceEEEEEEeCCCCccCcCHHHHHHHHHhcCCCeEEEEECCC
Confidence 33456677776 56789999999996 67888776544
No 180
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=21.63 E-value=1.4e+02 Score=21.35 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=25.1
Q ss_pred CCcEEEEecCCchHHHHHHhhCC-CCCEEEEe
Q 039146 40 KASAIICFTSSGRAARLIAKYRP-TMPVLSVV 70 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~iS~~Rp-~~pIia~t 70 (84)
+++.||++--+|...+....+.. ..||+++-
T Consensus 108 ~~DlvI~lGGDGT~L~aa~~~~~~~~PvlGiN 139 (365)
T 3pfn_A 108 QIDFIICLGGDGTLLYASSLFQGSVPPVMAFH 139 (365)
T ss_dssp TCSEEEEESSTTHHHHHHHHCSSSCCCEEEEE
T ss_pred CCCEEEEEcChHHHHHHHHHhccCCCCEEEEc
Confidence 57899999999988877777654 57999984
No 181
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=21.54 E-value=1.2e+02 Score=16.86 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=26.8
Q ss_pred HHHHHHhcCCcEEEEecC----Cch-HHHHHHh--hCCCCCEEEEecChh
Q 039146 32 AVRSAIKVKASAIICFTS----SGR-AARLIAK--YRPTMPVLSVVIPQL 74 (84)
Q Consensus 32 a~~~a~~~~~~aIv~~T~----sG~-ta~~iS~--~Rp~~pIia~t~~~~ 74 (84)
+.........+.|++--. +|. ..+.+.+ ..|.+|||.++....
T Consensus 43 a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~ 92 (142)
T 3cg4_A 43 CIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNA 92 (142)
T ss_dssp HHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTC
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCC
Confidence 334444556787777543 333 3455655 578899999987643
No 182
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=21.51 E-value=1.5e+02 Score=18.16 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=24.3
Q ss_pred HHhcCCcEEEEecC----CchH-HHHHHhhCCCCCEEEEecChhh
Q 039146 36 AIKVKASAIICFTS----SGRA-ARLIAKYRPTMPVLSVVIPQLK 75 (84)
Q Consensus 36 a~~~~~~aIv~~T~----sG~t-a~~iS~~Rp~~pIia~t~~~~~ 75 (84)
......+.|++.-. +|.. .+.+-+ +|.+|||.++.....
T Consensus 44 ~~~~~~dlvllD~~l~~~~g~~~~~~l~~-~~~~~ii~lt~~~~~ 87 (230)
T 2oqr_A 44 FDRAGADIVLLDLMLPGMSGTDVCKQLRA-RSSVPVIMVTARDSE 87 (230)
T ss_dssp HHHHCCSEEEEESSCSSSCHHHHHHHHHH-HCSCSEEEEECCHHH
T ss_pred HhccCCCEEEEECCCCCCCHHHHHHHHHc-CCCCCEEEEeCCCcH
Confidence 34456787777532 4433 344444 489999999877653
No 183
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Probab=21.48 E-value=1.4e+02 Score=21.22 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=26.4
Q ss_pred CCcEEEEecCCchHHHHHHhh----CCCCCEEEEecC
Q 039146 40 KASAIICFTSSGRAARLIAKY----RPTMPVLSVVIP 72 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~iS~~----Rp~~pIia~t~~ 72 (84)
..++||+..-+|.++.-++++ .|.+.||++-+.
T Consensus 252 ~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vrvigVe~~ 288 (389)
T 1wkv_A 252 ALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPA 288 (389)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred CCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEecC
Confidence 468999999999998766543 788999999764
No 184
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=21.46 E-value=1.3e+02 Score=19.63 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=23.8
Q ss_pred EEEecCCchHHHHH----Hhh--CCCCCEEEEecChhhhccc
Q 039146 44 IICFTSSGRAARLI----AKY--RPTMPVLSVVIPQLKTNQL 79 (84)
Q Consensus 44 Iv~~T~sG~ta~~i----S~~--Rp~~pIia~t~~~~~~r~L 79 (84)
+...|-+|.|...+ ... .+...++.++|....+.|+
T Consensus 49 ~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 90 (367)
T 1hv8_A 49 AQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQV 90 (367)
T ss_dssp EECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHH
T ss_pred EECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHH
Confidence 33579999996522 222 3567788898987776554
No 185
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=21.33 E-value=80 Score=21.43 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=24.6
Q ss_pred HHHHHhcCCcEEEEecCCchH-HHHHHhhCCCCCEEEEe
Q 039146 33 VRSAIKVKASAIICFTSSGRA-ARLIAKYRPTMPVLSVV 70 (84)
Q Consensus 33 ~~~a~~~~~~aIv~~T~sG~t-a~~iS~~Rp~~pIia~t 70 (84)
++.....++++||+..++..+ +..--+-+-.+||+.+.
T Consensus 79 ~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigii 117 (290)
T 2vvt_A 79 ADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVI 117 (290)
T ss_dssp HHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESS
T ss_pred HHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEccc
Confidence 333345589999998877763 34333444579999863
No 186
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Probab=21.20 E-value=35 Score=25.31 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=21.5
Q ss_pred EEEEecCCchHHHHHHhh-----C-------CCCCEEEEecC
Q 039146 43 AIICFTSSGRAARLIAKY-----R-------PTMPVLSVVIP 72 (84)
Q Consensus 43 aIv~~T~sG~ta~~iS~~-----R-------p~~pIia~t~~ 72 (84)
.+|+.|.||.|.-.++.+ + ....++|+|.+
T Consensus 143 lvIviSKSGtT~ET~~~~~~ar~~l~~~~G~~~~~~VAvT~~ 184 (460)
T 2q8n_A 143 LFNVISKSGSTAEVMATYSIARGILEAYGLDPREHMLITTDP 184 (460)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHHHHHTTCCGGGTEEEEECS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCccCeEEEEeCC
Confidence 778899999886544333 1 23679999987
No 187
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=21.05 E-value=76 Score=20.37 Aligned_cols=45 Identities=18% Similarity=0.094 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEE
Q 039146 24 HLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSV 69 (84)
Q Consensus 24 ~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~ 69 (84)
....+...+-.+ ...++++|++..+|...+..--+-+-..||+.+
T Consensus 59 ~~~~l~~~~~~l-~~~g~d~iviaCnTa~~~~~~l~~~~~iPvi~i 103 (228)
T 1jfl_A 59 PRPQLIWTAKRL-EECGADFIIMPCNTAHAFVEDIRKAIKIPIISM 103 (228)
T ss_dssp CHHHHHHHHHHH-HHHTCSEEECSCTGGGGGHHHHHHHCSSCBCCH
T ss_pred HHHHHHHHHHHH-HHcCCCEEEEcCccHHHHHHHHHHhCCCCEech
Confidence 334444444443 567899999988888654433334457888875
No 188
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=20.67 E-value=1.8e+02 Score=20.23 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=19.4
Q ss_pred CcEEEEecCCchHHHHHHhhCCCCCEE-EEe
Q 039146 41 ASAIICFTSSGRAARLIAKYRPTMPVL-SVV 70 (84)
Q Consensus 41 ~~aIv~~T~sG~ta~~iS~~Rp~~pIi-a~t 70 (84)
+++|++=+..-..+..++++-|.+||| |.+
T Consensus 99 ~D~iviR~~~~~~~~~la~~~~~vPVINag~ 129 (310)
T 3csu_A 99 VDAIVMRHPQEGAARLATEFSGNVPVLNAGD 129 (310)
T ss_dssp CSEEEEEESSTTHHHHHHHHCTTCCEEEEEE
T ss_pred CCEEEEECCChhHHHHHHHhcCCCCEEcCcc
Confidence 466666666666677777776667777 443
No 189
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.66 E-value=1.2e+02 Score=16.87 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=26.0
Q ss_pred HHHHHHhcCCcEEEEecC----Cch-HHHHHHh--hCCCCCEEEEecCh
Q 039146 32 AVRSAIKVKASAIICFTS----SGR-AARLIAK--YRPTMPVLSVVIPQ 73 (84)
Q Consensus 32 a~~~a~~~~~~aIv~~T~----sG~-ta~~iS~--~Rp~~pIia~t~~~ 73 (84)
+.......+.+.||+-.. +|. ..+.+-+ ..|.+|||+++...
T Consensus 43 a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 43 ALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNV 91 (144)
T ss_dssp HHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTC
T ss_pred HHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCC
Confidence 334445667787777543 232 2344544 46889999998654
No 190
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=20.39 E-value=85 Score=17.44 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=24.6
Q ss_pred hcCCcEEEEecC----Cc-hHHHHHHhhCCCCCEEEEecChh
Q 039146 38 KVKASAIICFTS----SG-RAARLIAKYRPTMPVLSVVIPQL 74 (84)
Q Consensus 38 ~~~~~aIv~~T~----sG-~ta~~iS~~Rp~~pIia~t~~~~ 74 (84)
..+.+.|++-.. +| ...+.+-+..|..|||.++....
T Consensus 57 ~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 98 (135)
T 3snk_A 57 DTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELT 98 (135)
T ss_dssp TCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCC
T ss_pred ccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence 445677766432 22 34567777778999999987654
No 191
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=20.38 E-value=1.4e+02 Score=20.80 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEEecCCchHH-----------HHHHhhCCCCCEEEEecChhh
Q 039146 22 MSHLESITSSAVRSAIKVKASAIICFTSSGRAA-----------RLIAKYRPTMPVLSVVIPQLK 75 (84)
Q Consensus 22 ~~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta-----------~~iS~~Rp~~pIia~t~~~~~ 75 (84)
.++.+++-..+.++ ..-+++.||+++..|... ..+++.=|.+-+|...++...
T Consensus 190 ~d~~~~~~~~v~~L-k~~g~D~II~l~H~G~~~d~~~~~~e~~~~~lA~~v~giD~IigGHsH~~ 253 (341)
T 3gve_A 190 QDIVESANETIPKM-KAEGADVIIALAHTGIEKQAQSSGAENAVFDLATKTKGIDAIISGHQHGL 253 (341)
T ss_dssp CCHHHHHHHHHHHH-HHTTCSEEEEEECCCCCSSCCCTTCSSCHHHHHHHCSCCCEEEECSSCCE
T ss_pred cCHHHHHHHHHHHH-HhcCCCEEEEEeccCccccccccccchhHHHHHhcCCCCcEEEECCCCcc
Confidence 45555544443333 345799999999998642 357766688998887766543
No 192
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=20.30 E-value=73 Score=22.49 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhccccc
Q 039146 21 PMSHLESITSSAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTNQLRW 81 (84)
Q Consensus 21 ~~~~~~~ia~~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r~L~l 81 (84)
|...-+.++.+....+++++++-||++.- .+.-+..-|| .+|.+...+++....+..
T Consensus 115 P~~~w~~f~~avl~~a~~~gV~~vv~Lgg---ip~~vpHtRP-~~V~~~at~~el~~~~~~ 171 (325)
T 3e35_A 115 PDVEWERFAAAVGQIVERLGVRLSVSFHG---IPMGVPHTRP-VGITPHGSRTDLVPGHRS 171 (325)
T ss_dssp CSSCHHHHHHHHHHHHHHTTEEEEEEEEE---EEESCCTTSC-CCEEEEESCGGGCC----
T ss_pred CcchHHHHHHHHHHHHHHcCCCEEEEEeC---ccCCCCCCCC-ceeEEEeCCHHHHHhhcc
Confidence 33345789999999999999998887642 1111223354 678888888887766543
No 193
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=20.21 E-value=65 Score=21.68 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=17.7
Q ss_pred CCcEEEEecCCchHHHHHHh
Q 039146 40 KASAIICFTSSGRAARLIAK 59 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~iS~ 59 (84)
+...++++|.+|..++.+..
T Consensus 56 dTSGLLLlT~dg~~a~~L~~ 75 (237)
T 2gml_A 56 DSQGLIFLTNHGDLVNKILR 75 (237)
T ss_dssp TCEEEEEEESCHHHHHHHHH
T ss_pred CCeeEEEEEcCHHHHHHHhC
Confidence 56889999999999998885
No 194
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=20.17 E-value=1.1e+02 Score=16.20 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=26.6
Q ss_pred HHHHhcCCcEEEEec----CCch-HHHHHHhhCCCCCEEEEecChhh
Q 039146 34 RSAIKVKASAIICFT----SSGR-AARLIAKYRPTMPVLSVVIPQLK 75 (84)
Q Consensus 34 ~~a~~~~~~aIv~~T----~sG~-ta~~iS~~Rp~~pIia~t~~~~~ 75 (84)
......+.+.|++-- .+|. ..+.+-+..|..||+.++.....
T Consensus 39 ~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 85 (116)
T 3a10_A 39 KKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHY 85 (116)
T ss_dssp HHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGG
T ss_pred HHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcch
Confidence 334455678777643 2443 34566666789999999876543
No 195
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=20.15 E-value=1.3e+02 Score=19.91 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=31.1
Q ss_pred CCcEEEEecCCchHHHHHHhhCCCCCEEEEecChhhhc
Q 039146 40 KASAIICFTSSGRAARLIAKYRPTMPVLSVVIPQLKTN 77 (84)
Q Consensus 40 ~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~~~~~r 77 (84)
+.+.+.+.+-+|..++.++++.|...|.++=.|+.+.+
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~ 113 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIE 113 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHH
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHH
Confidence 45677888899999999999877788999987776653
No 196
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=20.07 E-value=2e+02 Score=19.08 Aligned_cols=41 Identities=17% Similarity=0.045 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCcEEEEecCCchHHHHHHhhCCCCCEEEEecC
Q 039146 31 SAVRSAIKVKASAIICFTSSGRAARLIAKYRPTMPVLSVVIP 72 (84)
Q Consensus 31 ~a~~~a~~~~~~aIv~~T~sG~ta~~iS~~Rp~~pIia~t~~ 72 (84)
...+...+.+.++||+.|..+..+..+++ +..+|++.+.++
T Consensus 93 ~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~-~~giP~v~~~~~ 133 (402)
T 3ia7_A 93 AAEEALGDNPPDLVVYDVFPFIAGRLLAA-RWDRPAVRLTGG 133 (402)
T ss_dssp HHHHHHTTCCCSEEEEESTTHHHHHHHHH-HHTCCEEEEESS
T ss_pred HHHHHHhccCCCEEEECchHHHHHHHHHH-hhCCCEEEEecc
Confidence 34455556688988886566666766665 458999988744
No 197
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=20.01 E-value=1.2e+02 Score=16.67 Aligned_cols=38 Identities=8% Similarity=-0.102 Sum_probs=22.8
Q ss_pred HHHhcCCcEEEEecCCch-HHHHHHhhCC-CCCEEEEecCh
Q 039146 35 SAIKVKASAIICFTSSGR-AARLIAKYRP-TMPVLSVVIPQ 73 (84)
Q Consensus 35 ~a~~~~~~aIv~~T~sG~-ta~~iS~~Rp-~~pIia~t~~~ 73 (84)
.......+.||....+|. ..+.+-+. | .+|||.++...
T Consensus 57 ~l~~~~~dlvi~~~~~g~~~~~~l~~~-~~~~~ii~ls~~~ 96 (137)
T 2pln_A 57 LMDIRNYDLVMVSDKNALSFVSRIKEK-HSSIVVLVSSDNP 96 (137)
T ss_dssp HHHHSCCSEEEECSTTHHHHHHHHHHH-STTSEEEEEESSC
T ss_pred HHHcCCCCEEEEcCccHHHHHHHHHhc-CCCccEEEEeCCC
Confidence 334456777772223443 23445445 7 89999998765
Done!