BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039147
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4
PE=2 SV=3
Length = 265
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
MAR LKKH KRLNA G FAPKP + EC+P I +NRL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLPLILIIRNRL 52
>sp|O22424|RS4_MAIZE 40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1
Length = 265
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
MAR LKKH KRLNA G FAPKP + EC+P I +NRL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLPLILIIRNRL 52
>sp|P46299|RS4_GOSHI 40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1
Length = 262
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
MAR LKKH KRLNA G FAPKP + EC+P I +NRL
Sbjct: 1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKP-SSGPHKSRECLPLILILRNRL 52
>sp|O81363|RS4_PRUAR 40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1
Length = 261
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
MAR LKKH KRLNA G FAPKP + EC+P I +NRL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLPLILILRNRL 52
>sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1
Length = 264
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
MAR LKKH KRLNA G FAPKP + EC+P + +NRL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLPLVIIMRNRL 52
>sp|P49204|RS42_ARATH 40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2
SV=4
Length = 262
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
MAR LKKH KRLNA G FAPKP + EC+P + +NRL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLPLVLIIRNRL 52
>sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2
SV=2
Length = 262
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
MAR LKKH KRLNA G FAPKP + EC+P + +NRL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLPLVLIIRNRL 52
>sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2
SV=1
Length = 261
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
MAR LKKH KRLNA G FAPKP + EC+P + +NRL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLPLVLIIRNRL 52
>sp|Q9P4W9|RS4C_SCHPO 40S ribosomal protein S4-C OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps4c PE=1 SV=1
Length = 262
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
M R KKH KR+ A SGT+APKP P + EC+P I +NRL
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKP-SPGPHKARECLPLIVFLRNRL 52
>sp|Q9USW5|RS4B_SCHPO 40S ribosomal protein S4-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps4b PE=1 SV=1
Length = 262
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
M R KKH KR+ A SGT+APKP P + EC+P I +NRL
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKP-SPGPHKARECLPLIVFLRNRL 52
>sp|P87158|RS4A_SCHPO 40S ribosomal protein S4-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps4a PE=2 SV=2
Length = 262
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
M R KKH KR+ A SGT+APKP P + EC+P I +NRL
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKP-SPGPHKARECLPLIVFLRNRL 52
>sp|Q56FH2|RS4_LYSTE 40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2
SV=1
Length = 262
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
MAR KKH KRLNA G G +AP+P + EC+P + +NRL
Sbjct: 1 MARGPKKHLKRLNAPKSWMLGKLGGVYAPRPST-GPHKLRECLPLLIFLRNRL 52
>sp|Q95V34|RS4_SPOFR 40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2
SV=1
Length = 263
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNARGT-----CSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
MAR KKH KRLNA G +AP+P + EC+P + +NRL
Sbjct: 1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPST-GPHKLRECLPLVIFLRNRL 52
>sp|Q5UAP0|RS4_BOMMO 40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1
Length = 263
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNARGT-----CSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
MAR KKH KRLNA G +AP+P + EC+P + +NRL
Sbjct: 1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPST-GPHKLRECLPLVIFLRNRL 52
>sp|P51405|RS4_DICDI 40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1
SV=3
Length = 267
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 14/57 (24%)
Query: 1 MARYLKKHQKRLNARG-----TCSGTFAPKPLIPQTNSG----SECMPFICGPKNRL 48
MAR KKH KRL A SG +AP+P +SG EC+P I +NRL
Sbjct: 1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRP-----SSGPHKLRECLPLILVLRNRL 52
>sp|Q4PMB3|RS4_IXOSC 40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1
Length = 262
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 1 MARYLKKHQKRLNARGT-----CSGTFAPKPLIPQTNSGSECMPFICGPKNRL 48
MAR KKH KRLNA + G FAP+P + E +P I +NRL
Sbjct: 1 MARGPKKHLKRLNAPKSWMLDKLGGVFAPRPST-GPHKLRESLPLIIMLRNRL 52
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,313,103
Number of Sequences: 539616
Number of extensions: 906835
Number of successful extensions: 1992
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1989
Number of HSP's gapped (non-prelim): 16
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)