Query 039147
Match_columns 71
No_of_seqs 102 out of 226
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 11:06:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039147.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039147hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ycya1 b.38.1.4 (A:5-70) Hypo 22.3 15 0.0011 20.7 1.1 23 41-66 36-59 (66)
2 d1b3ta_ d.58.8.1 (A:) Epstein 18.3 17 0.0013 23.2 0.8 28 17-45 78-107 (147)
3 d1owla2 c.28.1.1 (A:3-204) DNA 15.1 35 0.0026 20.6 1.7 15 39-53 2-16 (202)
4 d1pn0a2 c.47.1.10 (A:462-662) 14.9 18 0.0013 23.0 0.2 31 36-70 21-51 (201)
5 d2j07a2 c.28.1.1 (A:2-171) DNA 14.8 36 0.0026 20.3 1.7 15 39-53 2-16 (170)
6 d1x4ka1 g.39.1.3 (A:35-66) Fou 7.9 55 0.004 15.9 0.6 11 59-69 12-23 (32)
7 d1nzja_ c.26.1.1 (A:) Glutamyl 6.9 65 0.0048 20.6 0.8 8 20-27 5-12 (286)
8 d2glia5 g.37.1.1 (A:229-257) F 6.5 29 0.0021 16.7 -0.9 9 3-11 18-26 (29)
9 d1s28a_ d.198.1.1 (A:) AvrPphF 6.5 69 0.005 19.9 0.7 7 64-70 29-35 (130)
10 d1vlba2 d.15.4.2 (A:1-80) Alde 5.8 37 0.0027 19.0 -0.9 18 37-54 20-37 (80)
No 1
>d1ycya1 b.38.1.4 (A:5-70) Hypothetical protein PF1955 {Pyrococcus furiosus [TaxId: 2261]}
Probab=22.35 E-value=15 Score=20.67 Aligned_cols=23 Identities=4% Similarity=-0.119 Sum_probs=17.6
Q ss_pred eeeecccccCcccc-hhhheeeeeecC
Q 039147 41 ICGPKNRLIPGRWN-PCCMSQILKANE 66 (71)
Q Consensus 41 ~i~lRd~Lk~A~~~-~ic~q~~ik~~~ 66 (71)
.++|||+-.|+-|. + |.+++||.
T Consensus 36 viLL~dV~D~~GNk~k---~llv~idD 59 (66)
T d1ycya1 36 VILLKDVVDVIGNRGK---QMLIGLED 59 (66)
T ss_dssp EEEEEEEEETTEEEEE---EEEEEGGG
T ss_pred eEeehhhHHHhccccc---eeEEEecc
Confidence 47889999998873 4 77778775
No 2
>d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1) {Epstein-Barr virus [TaxId: 10376]}
Probab=18.30 E-value=17 Score=23.22 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=18.6
Q ss_pred ccccccccCCCCCCCCCCCcccc--eeeeec
Q 039147 17 TCSGTFAPKPLIPQTNSGSECMP--FICGPK 45 (71)
Q Consensus 17 kk~~~fa~kps~pGPH~~~~slP--L~i~lR 45 (71)
|+-.-+||-|- |.|-+++||.- +++||.
T Consensus 78 RLPyG~a~gpG-PqPgPl~ES~~~yFlvFlq 107 (147)
T d1b3ta_ 78 RLPFGMAPGPG-PQPGPLRESIVCYFMVFLQ 107 (147)
T ss_dssp EEECCCCSSSS-CCCCTTCEEEEEEEEEEES
T ss_pred ccccCcCCCCC-CCCCcchhheeeeeeeeee
Confidence 45555677777 77888888854 455543
No 3
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=15.06 E-value=35 Score=20.64 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=14.0
Q ss_pred ceeeeecccccCccc
Q 039147 39 PFICGPKNRLIPGRW 53 (71)
Q Consensus 39 PL~i~lRd~Lk~A~~ 53 (71)
|.++|+|+=|.+.||
T Consensus 2 ~~l~Wfr~DLRl~DN 16 (202)
T d1owla2 2 PILFWHRRDLRLSDN 16 (202)
T ss_dssp CEEEEESSCCCSSSC
T ss_pred CEEEEECCCCccchH
Confidence 789999999999998
No 4
>d1pn0a2 c.47.1.10 (A:462-662) Phenol hydroxylase, C-terminal domain {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}
Probab=14.89 E-value=18 Score=23.04 Aligned_cols=31 Identities=3% Similarity=-0.180 Sum_probs=24.0
Q ss_pred cccceeeeecccccCcccchhhheeeeeecCceee
Q 039147 36 ECMPFICGPKNRLIPGRWNPCCMSQILKANENYCF 70 (71)
Q Consensus 36 ~slPL~i~lRd~Lk~A~~~~ic~q~~ik~~~~~~~ 70 (71)
+.+|-..++| +||-+.+.+|+.|+.||++..
T Consensus 21 ~R~~sa~V~R----~aDa~p~~L~~~~~adGrfrI 51 (201)
T d1pn0a2 21 TRFKSQPVVR----HSEGLWMHFGDRLVTDGRFRI 51 (201)
T ss_dssp SBCCCCEEEE----TTTTEEEEGGGGCCCSSCEEE
T ss_pred eecCCceEEE----ecCCCEeehhccccCCCcEEE
Confidence 3455555655 688888999999999999874
No 5
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]}
Probab=14.76 E-value=36 Score=20.30 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=13.7
Q ss_pred ceeeeecccccCccc
Q 039147 39 PFICGPKNRLIPGRW 53 (71)
Q Consensus 39 PL~i~lRd~Lk~A~~ 53 (71)
|.++|+|+=|.+.||
T Consensus 2 p~l~Wfr~DLRl~Dn 16 (170)
T d2j07a2 2 PLLVWHRGDLRLHDH 16 (170)
T ss_dssp CEEEEESSCCCSTTC
T ss_pred CEEEEECCCCcccch
Confidence 779999999999997
No 6
>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.87 E-value=55 Score=15.91 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=7.0
Q ss_pred eeee-eecCcee
Q 039147 59 SQIL-KANENYC 69 (71)
Q Consensus 59 q~~i-k~~~~~~ 69 (71)
+.|| |.|++||
T Consensus 12 ksfipk~~~~yC 23 (32)
T d1x4ka1 12 KSFIPKDNQNFC 23 (32)
T ss_dssp SSEEEETTEEEE
T ss_pred cccccCCCCceE
Confidence 3444 6677888
No 7
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}
Probab=6.93 E-value=65 Score=20.64 Aligned_cols=8 Identities=63% Similarity=1.207 Sum_probs=5.6
Q ss_pred cccccCCC
Q 039147 20 GTFAPKPL 27 (71)
Q Consensus 20 ~~fa~kps 27 (71)
+-|||.|+
T Consensus 5 tRFAPsPt 12 (286)
T d1nzja_ 5 GRFAPSPS 12 (286)
T ss_dssp EEECCCTT
T ss_pred EeeCcCCC
Confidence 35788777
No 8
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.50 E-value=29 Score=16.67 Aligned_cols=9 Identities=44% Similarity=0.567 Sum_probs=6.4
Q ss_pred ccchhcccc
Q 039147 3 RYLKKHQKR 11 (71)
Q Consensus 3 ~g~~kHlKR 11 (71)
++++||+|-
T Consensus 18 SSLRKH~k~ 26 (29)
T d2glia5 18 SSLRKHVKT 26 (29)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 467888874
No 9
>d1s28a_ d.198.1.1 (A:) AvrPphF ORF1, chaperone of AvrPphF ORF2 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
Probab=6.49 E-value=69 Score=19.85 Aligned_cols=7 Identities=57% Similarity=1.374 Sum_probs=5.5
Q ss_pred ecCceee
Q 039147 64 ANENYCF 70 (71)
Q Consensus 64 ~~~~~~~ 70 (71)
+||-|||
T Consensus 29 e~EVYcF 35 (130)
T d1s28a_ 29 EHEVYCF 35 (130)
T ss_dssp TTCCEEE
T ss_pred cceEEEE
Confidence 5788887
No 10
>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=5.82 E-value=37 Score=19.03 Aligned_cols=18 Identities=6% Similarity=-0.300 Sum_probs=14.6
Q ss_pred ccceeeeecccccCcccc
Q 039147 37 CMPFICGPKNRLIPGRWN 54 (71)
Q Consensus 37 slPL~i~lRd~Lk~A~~~ 54 (71)
..+|+=+||+.|++-.+.
T Consensus 20 ~~~Lld~LR~~lgltg~K 37 (80)
T d1vlba2 20 EALLSDVLRQQLGLTGVK 37 (80)
T ss_dssp TSBHHHHHHHTTCCTTSC
T ss_pred CCCHHHHHhHhhCCcccc
Confidence 468888999999987763
Done!