BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039148
         (82 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
           Of Oxalate Oxidase
          Length = 201

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 52/82 (63%)

Query: 1   NRLIIMVLKKGDVFVFLVGLVHFKCNVGYGNVVAIVAFSSQNLGVVTIANTAFGSNPAIV 60
           N+L   V++ G+ FV   GL+HF+ NVG      +V+F+SQN G+V +  T FGS+P I 
Sbjct: 116 NKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIP 175

Query: 61  TDMLAKAFQAEKKIVKQLQNTF 82
           T +L KA + E  +V+ L++ F
Sbjct: 176 TPVLTKALRVEAGVVELLKSKF 197


>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
 pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
          Length = 201

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 52/82 (63%)

Query: 1   NRLIIMVLKKGDVFVFLVGLVHFKCNVGYGNVVAIVAFSSQNLGVVTIANTAFGSNPAIV 60
           N+L   V++ G+ FV   GL+HF+ NVG      +V+F+SQN G+V +  T FGS+P I 
Sbjct: 116 NKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIP 175

Query: 61  TDMLAKAFQAEKKIVKQLQNTF 82
           T +L KA + E  +V+ L++ F
Sbjct: 176 TPVLTKALRVEAGVVELLKSKF 197


>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
 pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
           Glycolate
          Length = 201

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 52/82 (63%)

Query: 1   NRLIIMVLKKGDVFVFLVGLVHFKCNVGYGNVVAIVAFSSQNLGVVTIANTAFGSNPAIV 60
           N+L   V++ G+ FV   GL+HF+ NVG      +V+F+SQN G+V +  T FGS+P I 
Sbjct: 116 NKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIP 175

Query: 61  TDMLAKAFQAEKKIVKQLQNTF 82
           T +L KA + E  +V+ L++ F
Sbjct: 176 TPVLTKALRVEAGVVELLKSKF 197


>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
           From Amaranthus Hypochondriacus L
          Length = 465

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 8   LKKGDVFVFLVGLVHFKCNVGYGNVVAIVAFSSQN 42
           L++GD+F    G+ H+  N G   +VA++   + N
Sbjct: 134 LREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN 168


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.139    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,992,246
Number of Sequences: 62578
Number of extensions: 56780
Number of successful extensions: 233
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 5
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)