BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039149
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 131 FLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIA 188
+L G L + +K N+ L L NQ+++L +L L L N+ L +
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLP 125
Query: 189 DGFFQLMPSLKVLKMSNCVNLTLKLPLGM-SKLGSLELLDVSHTGIRELPE 238
DG F + +L L +++ N LP G+ KL +L LD+S+ ++ LPE
Sbjct: 126 DGVFDKLTNLTYLNLAH--NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 181 NENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPE 238
N+ L +I F +P L +++ NL P L +L+ L +S+TGI+ LP+
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 478 HLKEMGVRACDQLEKLPLDSSSAKERKFVIRGEADWWNRLQWEDE 522
H+KE ++ ++ EK+P SSSA+ VIR DW L W DE
Sbjct: 25 HVKETALKELNRYEKIP--SSSAESS--VIRNYIDWLVALPWTDE 65
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 181 NENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPE 238
N+ L +I F +P L +++ NL P L +L+ L +S+TGI+ LP+
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 122 CEIEKEKRNFLV-CAGEGLKE-APDVKRWENVRRLSLMQNQIETLSEVPTCPH--LLTLF 177
CE+ K + V C L PD+ + + LS +N + T S P+ L L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLS--ENLLYTFSLATLMPYTRLTQLN 61
Query: 178 LDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELP 237
LD E + DG +P L L +S+ N LPL L +L +LDVS + LP
Sbjct: 62 LDRAELTKLQVDG---TLPVLGTLDLSH--NQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 238 EEXXXXXXXXXXXXRWTFELNKIPRQLISNSSRLRVLRM-------LGTGLLN 283
EL +P L++ + +L L + L GLLN
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 122 CEIEKEKRNFLV-CAGEGLKE-APDVKRWENVRRLSLMQNQIETLSEVPTCPH--LLTLF 177
CE+ K + V C L PD+ + + LS +N + T S P+ L L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLS--ENLLYTFSLATLMPYTRLTQLN 61
Query: 178 LDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELP 237
LD E + DG +P L L +S+ N LPL L +L +LDVS + LP
Sbjct: 62 LDRAELTKLQVDGT---LPVLGTLDLSH--NQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 238 EEXXXXXXXXXXXXRWTFELNKIPRQLISNSSRLRVLRM-------LGTGLLN 283
EL +P L++ + +L L + L GLLN
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 150 NVRRLSLMQNQIETLSE-VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVN 208
N+R L L N + TL E + + L + L +N ++ ++ F+ M L+ L +S N
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ--N 146
Query: 209 LTLKLPLGM----SKLGSLELLDVSHTGIRELP 237
+ P+ + +KL L LLD+S +++LP
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 122 CEIEKEKRNFLV-CAGEGLKE-APDVKRWENVRRLSLMQNQIETLSEVPTCPH--LLTLF 177
CE+ K + V C L PD+ + + LS +N + T S P+ L L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLS--ENLLYTFSLATLMPYTRLTQLN 61
Query: 178 LDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELP 237
LD E + DG +P L L +S+ N LPL L +L +LDVS + LP
Sbjct: 62 LDRAELTKLQVDGT---LPVLGTLDLSH--NQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 238 EEXXXXXXXXXXXXRWTFELNKIPRQLISNSSRLRVLRM-------LGTGLLN 283
EL +P L++ + +L L + L GLLN
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 122 CEIEKEKRNFLV-CAGEGLKE-APDVKRWENVRRLSLMQNQIETLSEVPTCPH--LLTLF 177
CE+ K + V C L PD+ + + LS +N + T S P+ L L
Sbjct: 4 CEVSKVASHLEVNCDKRDLTALPPDLPKDTTILHLS--ENLLYTFSLATLMPYTRLTQLN 61
Query: 178 LDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELP 237
LD E + DG +P L L +S+ N LPL L +L +LDVS + LP
Sbjct: 62 LDRCELTKLQVDG---TLPVLGTLDLSH--NQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 238 EEXXXXXXXXXXXXRWTFELNKIPRQLISNSSRLRVLRM-------LGTGLLN 283
EL +P L++ + +L L + L GLLN
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLN 169
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 122 CEIEKEKRNFLV-CAGEGLKE-APDVKRWENVRRLSLMQNQIETLSEVPTCPH--LLTLF 177
CE+ K + V C L PD+ + + LS +N + T S P+ L L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLS--ENLLYTFSLATLMPYTRLTQLN 61
Query: 178 LDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELP 237
LD E + DG +P L L +S+ N LPL L +L +LDVS + LP
Sbjct: 62 LDRCELTKLQVDG---TLPVLGTLDLSH--NQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 238 EEXXXXXXXXXXXXRWTFELNKIPRQLISNSSRLRVLRM-------LGTGLLN 283
EL +P L++ + +L L + L GLLN
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 163 TLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGS 222
+L+E+P P L L N NL ++D L P L+ L +SN N KLP +
Sbjct: 102 SLTELPELPQSLKSLLVDNNNLKALSD----LPPLLEYLGVSN--NQLEKLP-ELQNSSF 154
Query: 223 LELLDVSHTGIRELPE 238
L+++DV + +++LP+
Sbjct: 155 LKIIDVDNNSLKKLPD 170
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 122 CEIEKEKRNFLV-CAGEGLKE-APDVKRWENVRRLSLMQNQIETLSEVPTCPH--LLTLF 177
CE+ K + V C L PD+ + + LS +N + T S P+ L L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLS--ENLLYTFSLATLMPYTRLTQLN 61
Query: 178 LDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELP 237
LD E + DG +P L L +S+ N LPL L +L +LDVS + LP
Sbjct: 62 LDRCELTKLQVDG---TLPVLGTLDLSH--NQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 238 EEXXXXXXXXXXXXRWTFELNKIPRQLISNSSRLRVLRM-------LGTGLLN 283
EL +P L++ + +L L + L GLLN
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 122 CEIEKEKRNFLV-CAGEGLKE-APDVKRWENVRRLSLMQNQIETLSEVPTCPH--LLTLF 177
CE+ K + V C L PD+ + + LS +N + T S P+ L L
Sbjct: 4 CEVSKVASHLEVNCDKRDLTALPPDLPKDTTILHLS--ENLLYTFSLATLMPYTRLTQLN 61
Query: 178 LDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELP 237
LD E + DG +P L L +S+ N LPL L +L +LDVS + LP
Sbjct: 62 LDRCELTKLQVDGT---LPVLGTLDLSH--NQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 238 EEXXXXXXXXXXXXRWTFELNKIPRQLISNSSRLRVLRM-------LGTGLLN 283
EL +P L++ + +L L + L GLLN
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 132 LVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNE 182
++ +K ++ N+ L+L NQI +S + P++ LFL+ N+
Sbjct: 49 IIANNSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNK 99
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 122 CEIEKEKRNFLV-CAGEGLKE-APDVKRWENVRRLSLMQNQIETLSEVPTCPH--LLTLF 177
CE+ K + V C L PD+ + + LS +N + T S P+ L L
Sbjct: 5 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLS--ENLLYTFSLATLMPYTRLTQLN 62
Query: 178 LDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELP 237
LD E + DG +P L L +S+ N LPL L +L +LDVS + LP
Sbjct: 63 LDRCELTKLQVDGT---LPVLGTLDLSH--NQLQSLPLLGQTLPALTVLDVSFNRLTSLP 117
Query: 238 EEXXXXXXXXXXXXRWTFELNKIPRQLISNSSRLRVLRM-------LGTGLLN 283
EL +P L++ + +L L + L GLLN
Sbjct: 118 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 170
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 122 CEIEKEKRNFLV-CAGEGLKE-APDVKRWENVRRLSLMQNQIETLSEVPTCPH--LLTLF 177
CE+ K + V C L PD+ + + LS +N + T S P+ L L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLS--ENLLYTFSLATLMPYTRLTQLN 61
Query: 178 LDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELP 237
LD E + DG +P L L +S+ N LPL L +L +LDVS + LP
Sbjct: 62 LDRCELTKLQVDGT---LPVLGTLDLSH--NQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 238 EEXXXXXXXXXXXXRWTFELNKIPRQLISNSSRLRVLRM-------LGTGLLN 283
EL +P L++ + +L L + L GLLN
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 122 CEIEKEKRNFLV-CAGEGLKE-APDVKRWENVRRLSLMQNQIETLSEVPTCPH--LLTLF 177
CE+ K + V C L PD+ + + LS +N + T S P+ L L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLS--ENLLYTFSLATLMPYTRLTQLN 61
Query: 178 LDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELP 237
LD E + DG +P L L +S+ N LPL L +L +LDVS + LP
Sbjct: 62 LDRCELTKLQVDGT---LPVLGTLDLSH--NQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 238 EEXXXXXXXXXXXXRWTFELNKIPRQLISNSSRLRVLRM-------LGTGLLN 283
EL +P L++ + +L L + L GLLN
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
>pdb|3HTK|C Chain C, Crystal Structure Of Mms21 And Smc5 Complex
Length = 267
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 78 DRFGAEN--QGYDILDTLVRACLLEEVEDDEVKMHDVVRDMALWITCEIEKEKRN 130
DR G +N QGY D AC V M D VRD + + C+I K K +
Sbjct: 205 DRDGIQNYLQGYTTRDCPQAAC------SQVVSMRDFVRDPIMELRCKIAKMKES 253
>pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
Length = 934
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 64 LIDCWIGEGFLGESDRFGAENQGYDILDTLVRACLLEEVEDDEV 107
+I+C + E ++ E+QGYDI++ + C LE + +++
Sbjct: 840 VIECAKQKALELEEFQYIGESQGYDIMEPAAKKCYLEREQGEKI 883
>pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|A Chain A, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8F|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
pdb|3THW|A Chain A, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|A Chain A, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|A Chain A, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|A Chain A, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 934
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 64 LIDCWIGEGFLGESDRFGAENQGYDILDTLVRACLLEEVEDDEV 107
+I+C + E ++ E+QGYDI++ + C LE + +++
Sbjct: 840 VIECAKQKALELEEFQYIGESQGYDIMEPAAKKCYLEREQGEKI 883
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,983,342
Number of Sequences: 62578
Number of extensions: 592902
Number of successful extensions: 1197
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 42
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)