Query 039149
Match_columns 536
No_of_seqs 356 out of 3214
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.5E-58 9.7E-63 488.4 18.0 502 1-528 370-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.6E-41 1.9E-45 375.1 25.5 424 1-496 402-912 (1153)
3 PLN00113 leucine-rich repeat r 99.9 2.8E-22 6E-27 225.7 18.2 309 147-488 116-439 (968)
4 PLN03210 Resistant to P. syrin 99.9 7.5E-22 1.6E-26 222.5 19.7 324 130-492 592-945 (1153)
5 PLN00113 leucine-rich repeat r 99.9 6.1E-22 1.3E-26 222.9 18.0 333 130-497 121-472 (968)
6 KOG0444 Cytoskeletal regulator 99.9 1.9E-24 4.1E-29 210.7 -4.4 318 129-496 34-381 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 3.4E-22 7.4E-27 195.1 -3.0 288 144-484 98-393 (1255)
8 KOG4194 Membrane glycoprotein 99.8 7.4E-20 1.6E-24 177.7 4.9 311 146-493 99-431 (873)
9 KOG4194 Membrane glycoprotein 99.7 4.1E-19 8.9E-24 172.6 0.8 35 392-427 390-426 (873)
10 KOG0472 Leucine-rich repeat pr 99.7 2.1E-19 4.6E-24 167.3 -4.9 320 145-487 202-538 (565)
11 KOG4658 Apoptotic ATPase [Sign 99.7 1.3E-16 2.8E-21 171.6 7.4 337 130-513 526-878 (889)
12 KOG0472 Leucine-rich repeat pr 99.6 5.8E-18 1.3E-22 157.7 -6.1 317 147-507 181-533 (565)
13 PRK15387 E3 ubiquitin-protein 99.6 6.5E-15 1.4E-19 155.2 12.9 255 127-463 201-455 (788)
14 PRK15370 E3 ubiquitin-protein 99.6 1E-14 2.2E-19 154.7 11.2 116 151-281 180-295 (754)
15 PRK15387 E3 ubiquitin-protein 99.5 3.8E-14 8.3E-19 149.5 13.6 255 150-488 202-456 (788)
16 KOG0618 Serine/threonine phosp 99.5 9.2E-16 2E-20 157.3 -0.4 268 149-466 219-489 (1081)
17 KOG0617 Ras suppressor protein 99.5 3E-16 6.4E-21 129.8 -4.4 164 138-323 22-188 (264)
18 PRK15370 E3 ubiquitin-protein 99.5 1.2E-13 2.7E-18 146.5 9.6 117 149-280 199-315 (754)
19 KOG0617 Ras suppressor protein 99.4 2.8E-15 6E-20 124.1 -3.6 144 135-283 41-187 (264)
20 KOG0618 Serine/threonine phosp 99.4 2E-14 4.3E-19 147.6 1.1 280 170-497 44-329 (1081)
21 KOG4237 Extracellular matrix p 99.3 4.3E-14 9.2E-19 132.0 -5.1 62 355-427 269-332 (498)
22 KOG4237 Extracellular matrix p 99.3 2.6E-13 5.6E-18 126.9 -3.3 267 172-484 68-353 (498)
23 cd00116 LRR_RI Leucine-rich re 99.2 1.4E-11 3E-16 120.9 3.5 36 392-428 219-261 (319)
24 cd00116 LRR_RI Leucine-rich re 99.1 2.4E-11 5.2E-16 119.3 4.2 69 355-429 216-290 (319)
25 PF00931 NB-ARC: NB-ARC domain 99.0 8.8E-11 1.9E-15 113.3 3.5 74 2-76 211-284 (287)
26 KOG0532 Leucine-rich repeat (L 99.0 1.5E-11 3.2E-16 120.5 -4.5 166 175-370 79-244 (722)
27 KOG4341 F-box protein containi 99.0 2.1E-11 4.5E-16 115.3 -3.6 105 150-254 139-252 (483)
28 PF14580 LRR_9: Leucine-rich r 99.0 4.5E-10 9.7E-15 97.5 4.3 125 149-279 19-150 (175)
29 KOG4341 F-box protein containi 99.0 3.5E-11 7.5E-16 113.8 -3.5 295 171-495 138-444 (483)
30 PF14580 LRR_9: Leucine-rich r 98.9 2.1E-09 4.6E-14 93.3 4.8 123 129-254 21-150 (175)
31 KOG0532 Leucine-rich repeat (L 98.8 3.6E-10 7.9E-15 110.9 -4.0 188 134-345 82-271 (722)
32 KOG2120 SCF ubiquitin ligase, 98.7 7.5E-10 1.6E-14 100.3 -3.1 38 392-429 311-350 (419)
33 KOG3207 Beta-tubulin folding c 98.7 2.9E-09 6.2E-14 101.6 -0.2 207 194-425 119-334 (505)
34 KOG1259 Nischarin, modulator o 98.7 1.8E-09 3.9E-14 97.9 -1.6 133 168-322 281-413 (490)
35 KOG3207 Beta-tubulin folding c 98.7 7.7E-09 1.7E-13 98.7 1.8 161 146-324 118-287 (505)
36 COG4886 Leucine-rich repeat (L 98.6 2.2E-08 4.8E-13 101.2 4.1 103 171-279 116-219 (394)
37 KOG1259 Nischarin, modulator o 98.6 7.3E-09 1.6E-13 94.0 -0.3 131 192-345 280-410 (490)
38 COG4886 Leucine-rich repeat (L 98.6 4.8E-08 1E-12 98.8 5.0 158 145-324 112-271 (394)
39 KOG2120 SCF ubiquitin ligase, 98.6 2.5E-09 5.4E-14 97.0 -4.1 136 335-489 235-375 (419)
40 PF13855 LRR_8: Leucine rich r 98.5 1E-07 2.2E-12 67.8 3.2 56 197-254 2-59 (61)
41 PF13855 LRR_8: Leucine rich r 98.5 1.6E-07 3.4E-12 66.9 3.8 59 221-280 1-60 (61)
42 PLN03150 hypothetical protein; 98.4 5.4E-07 1.2E-11 95.8 8.8 89 173-263 420-509 (623)
43 PLN03150 hypothetical protein; 98.3 1.6E-06 3.4E-11 92.2 8.2 85 197-283 419-504 (623)
44 PF12799 LRR_4: Leucine Rich r 98.2 2.4E-06 5.1E-11 55.7 4.4 40 222-262 2-41 (44)
45 PRK15386 type III secretion pr 98.1 8.5E-06 1.8E-10 79.8 8.5 72 192-277 48-120 (426)
46 PF12799 LRR_4: Leucine Rich r 98.1 2.7E-06 5.8E-11 55.4 3.4 40 196-237 1-40 (44)
47 KOG0531 Protein phosphatase 1, 98.1 4.2E-07 9E-12 92.2 -1.9 124 150-281 73-198 (414)
48 KOG1909 Ran GTPase-activating 98.1 1.1E-06 2.4E-11 82.0 1.1 90 168-258 27-133 (382)
49 KOG1859 Leucine-rich repeat pr 98.1 3.2E-07 7E-12 93.1 -3.0 125 172-318 165-289 (1096)
50 PRK15386 type III secretion pr 98.1 1.1E-05 2.3E-10 79.0 7.5 82 148-241 51-135 (426)
51 KOG3665 ZYG-1-like serine/thre 98.0 5.3E-06 1.1E-10 88.1 4.8 130 149-283 122-264 (699)
52 KOG1909 Ran GTPase-activating 98.0 1.5E-06 3.1E-11 81.2 0.5 138 143-282 24-198 (382)
53 KOG2982 Uncharacterized conser 98.0 4.3E-06 9.4E-11 76.3 3.1 33 392-424 247-286 (418)
54 KOG3665 ZYG-1-like serine/thre 98.0 2.3E-06 5.1E-11 90.8 1.6 108 171-281 122-232 (699)
55 KOG0531 Protein phosphatase 1, 97.9 2.1E-06 4.5E-11 87.2 -1.2 128 145-281 91-220 (414)
56 KOG1947 Leucine rich repeat pr 97.8 6.6E-06 1.4E-10 85.7 0.4 38 455-492 403-442 (482)
57 KOG1859 Leucine-rich repeat pr 97.7 1.3E-06 2.8E-11 88.9 -5.9 129 143-282 158-292 (1096)
58 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.4E-09 63.7 5.3 101 150-253 43-149 (233)
59 KOG4579 Leucine-rich repeat (L 97.6 8.1E-06 1.8E-10 66.0 -1.6 89 170-262 52-140 (177)
60 KOG1947 Leucine rich repeat pr 97.5 1.6E-05 3.5E-10 82.7 -1.7 36 457-492 380-416 (482)
61 KOG2982 Uncharacterized conser 97.4 2.1E-05 4.7E-10 71.9 -1.3 82 192-280 67-157 (418)
62 KOG4579 Leucine-rich repeat (L 97.2 9.5E-05 2.1E-09 59.9 0.5 87 149-239 53-141 (177)
63 KOG1644 U2-associated snRNP A' 97.1 0.00092 2E-08 58.1 5.0 84 220-319 41-124 (233)
64 KOG2123 Uncharacterized conser 96.9 9E-05 1.9E-09 67.3 -2.4 103 170-278 18-126 (388)
65 PF00560 LRR_1: Leucine Rich R 96.3 0.0019 4.1E-08 34.9 1.0 17 223-239 2-18 (22)
66 KOG2123 Uncharacterized conser 96.0 0.00033 7.1E-09 63.8 -4.8 98 149-251 19-124 (388)
67 KOG3864 Uncharacterized conser 95.9 0.0011 2.4E-08 57.7 -1.5 68 355-430 120-189 (221)
68 KOG2739 Leucine-rich acidic nu 95.8 0.0044 9.6E-08 56.3 1.8 90 192-282 61-156 (260)
69 PF00560 LRR_1: Leucine Rich R 95.8 0.0044 9.5E-08 33.4 1.0 22 197-220 1-22 (22)
70 PF13306 LRR_5: Leucine rich r 95.6 0.038 8.3E-07 45.7 6.7 94 168-270 32-127 (129)
71 KOG2739 Leucine-rich acidic nu 95.6 0.0066 1.4E-07 55.2 1.9 40 242-282 63-104 (260)
72 COG5238 RNA1 Ran GTPase-activa 95.4 0.032 6.9E-07 51.1 5.4 111 170-281 29-169 (388)
73 KOG3864 Uncharacterized conser 94.8 0.0072 1.6E-07 52.7 -0.3 37 334-371 151-187 (221)
74 PF13504 LRR_7: Leucine rich r 94.6 0.024 5.1E-07 28.3 1.5 14 223-236 3-16 (17)
75 PF13504 LRR_7: Leucine rich r 94.2 0.031 6.7E-07 27.9 1.3 17 477-494 1-17 (17)
76 PF13306 LRR_5: Leucine rich r 93.1 0.25 5.5E-06 40.7 6.0 102 168-278 9-112 (129)
77 COG5238 RNA1 Ran GTPase-activa 92.4 0.22 4.7E-06 45.9 4.8 161 148-320 29-226 (388)
78 smart00370 LRR Leucine-rich re 91.1 0.18 3.9E-06 28.3 1.9 17 222-238 3-19 (26)
79 smart00369 LRR_TYP Leucine-ric 91.1 0.18 3.9E-06 28.3 1.9 17 222-238 3-19 (26)
80 KOG0473 Leucine-rich repeat pr 91.0 0.0086 1.9E-07 53.4 -5.4 84 168-255 39-122 (326)
81 smart00369 LRR_TYP Leucine-ric 89.4 0.37 8E-06 27.0 2.3 22 243-265 1-22 (26)
82 smart00370 LRR Leucine-rich re 89.4 0.37 8E-06 27.0 2.3 22 243-265 1-22 (26)
83 KOG0473 Leucine-rich repeat pr 88.2 0.017 3.7E-07 51.5 -5.7 95 184-282 30-124 (326)
84 smart00367 LRR_CC Leucine-rich 83.8 0.64 1.4E-05 26.0 1.2 17 476-492 1-17 (26)
85 smart00364 LRR_BAC Leucine-ric 72.0 2.4 5.1E-05 23.8 1.1 17 222-238 3-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 68.2 4.1 8.9E-05 22.9 1.6 14 221-234 2-15 (26)
87 PF13516 LRR_6: Leucine Rich r 64.4 3.6 7.9E-05 22.3 0.9 13 221-233 2-14 (24)
88 smart00368 LRR_RI Leucine rich 41.7 20 0.00043 20.4 1.5 12 222-233 3-14 (28)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-58 Score=488.35 Aligned_cols=502 Identities=40% Similarity=0.658 Sum_probs=410.4
Q ss_pred CCchhHHHHHHHHHcc-ccccCCchhhhHHHHHHhhcCCCchhHhHHHhhcccCCCCcccCHHHHHHHHHHhCCCCC-Cc
Q 039149 1 KKAEHWRRAIEELRRS-ASEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLGE-SD 78 (536)
Q Consensus 1 k~~~~W~~~~~~l~~~-~~~~~~~~~~i~~~L~lSY~~L~~~~lk~cFl~~a~fp~~~~i~~~~Li~~Wia~g~i~~-~~ 78 (536)
+++.+|++|.+.+.+. ..+.+++++.|+++|++|||+||+ ++|.||+|||+||+||+|++++||.+||||||+.+ +.
T Consensus 370 ~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~ 448 (889)
T KOG4658|consen 370 KTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDG 448 (889)
T ss_pred CcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCcccc
Confidence 3567999999999998 666677788999999999999996 99999999999999999999999999999999999 77
Q ss_pred hhcHHHHHHHHHHHHHhcCccccc----CCCeEEehHHHHHHHHHHhcccccccceEEEecCCCcccCccccccccceEE
Q 039149 79 RFGAENQGYDILDTLVRACLLEEV----EDDEVKMHDVVRDMALWITCEIEKEKRNFLVCAGEGLKEAPDVKRWENVRRL 154 (536)
Q Consensus 79 ~~~~~~~~~~~~~~L~~~sl~~~~----~~~~~~mhdli~dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 154 (536)
+..++++|+.|+.+|+++++++.. ...+|+|||+|||+|.++|++.+..++++++..+.+....|....|..+|++
T Consensus 449 ~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~ 528 (889)
T KOG4658|consen 449 GETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRM 528 (889)
T ss_pred ccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEE
Confidence 899999999999999999999886 3479999999999999999987777778777776677778889999999999
Q ss_pred EeecCCcccccCCCCCCCcceEecccccc-hhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCC
Q 039149 155 SLMQNQIETLSEVPTCPHLLTLFLDFNEN-LNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGI 233 (536)
Q Consensus 155 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~-l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i 233 (536)
+++++.+..++....++.|++|.+.++.. +..++..||..|+.||+|||++|..+. ++|++|++|.|||||+++++.+
T Consensus 529 s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I 607 (889)
T KOG4658|consen 529 SLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGI 607 (889)
T ss_pred EEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCc
Confidence 99999999999999999999999998753 788999999999999999999987788 9999999999999999999999
Q ss_pred cccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceE
Q 039149 234 RELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVL 313 (536)
Q Consensus 234 ~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 313 (536)
+.+|.++++|.+|.+|++..+..+..+|. +...|++||+|.+....... +...+.++..+++|+.+
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~-------------~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSN-------------DKLLLKELENLEHLENL 673 (889)
T ss_pred cccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeecccccc-------------chhhHHhhhcccchhhh
Confidence 99999999999999999999877777765 36679999999998765332 45678888889999988
Q ss_pred EEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcc-
Q 039149 314 ELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFV- 392 (536)
Q Consensus 314 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~- 392 (536)
++.......+..+.....+.+..+.+.+.++... ... +.+..+.+|+.|.+.+|...+... .+.. ..... .
T Consensus 674 s~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~--~~~~~l~~L~~L~i~~~~~~e~~~-~~~~---~~~~~-~~ 745 (889)
T KOG4658|consen 674 SITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLI--SSLGSLGNLEELSILDCGISEIVI-EWEE---SLIVL-LC 745 (889)
T ss_pred eeecchhHhHhhhhhhHHHHHHhHhhhhcccccc-eee--cccccccCcceEEEEcCCCchhhc-cccc---ccchh-hh
Confidence 8876665444555555554445555655443222 222 278889999999999996643322 1110 00000 3
Q ss_pred cCCccEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCcccee-ccccccccccccC
Q 039149 393 FRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRL-HVEDLPDLKSIHW 471 (536)
Q Consensus 393 ~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~L~~~~~ 471 (536)
|+++.++.+.+|.....+.|....|+|+.|.+..|..++++++...... ........|.++..+ .+.+.+.++++..
T Consensus 746 f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~--~l~~~i~~f~~~~~l~~~~~l~~l~~i~~ 823 (889)
T KOG4658|consen 746 FPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL--ELKELILPFNKLEGLRMLCSLGGLPQLYW 823 (889)
T ss_pred HHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh--hcccEEecccccccceeeecCCCCceeEe
Confidence 7789999999999999999998999999999999999988876332211 111124557777777 5777888888888
Q ss_pred CCcCCCccceEeeccCCCCCCCCCCCccccCC--ceEE-EehHhhhhccccCchhhhhhh
Q 039149 472 KPLPFTHLKEMGVRACDQLEKLPLDSSSAKER--KFVI-RGEADWWNRLQWEDEATQIAF 528 (536)
Q Consensus 472 ~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~--l~~i-~~~~~~~~~~~~~~~~~~~~~ 528 (536)
....++.|+.+.+..||++..+|......... -+.+ ..+.+|.+.+.|.++..+..+
T Consensus 824 ~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 824 LPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred cccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 88888999999999999999999987665522 2333 345678999999999888777
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.6e-41 Score=375.12 Aligned_cols=424 Identities=22% Similarity=0.310 Sum_probs=279.5
Q ss_pred CCchhHHHHHHHHHccccccCCchhhhHHHHHHhhcCCCchhHhHHHhhcccCCCCcccCHHHHHHHHHHhCCCCCCchh
Q 039149 1 KKAEHWRRAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLGESDRF 80 (536)
Q Consensus 1 k~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~lk~cFl~~a~fp~~~~i~~~~Li~~Wia~g~i~~~~~~ 80 (536)
|+.++|++++++|+..+.. +|.++|++||++|+++..|.||+||||||.++.+ +.+..|+|.+.+....
T Consensus 402 k~~~~W~~~l~~L~~~~~~------~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~~-- 470 (1153)
T PLN03210 402 RDKEDWMDMLPRLRNGLDG------KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVNI-- 470 (1153)
T ss_pred CCHHHHHHHHHHHHhCccH------HHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCchh--
Confidence 4678999999999875543 8999999999999863599999999999999755 3477888887665421
Q ss_pred cHHHHHHHHHHHHHhcCcccccCCCeEEehHHHHHHHHHHhcccc--cccceEEEecCCC--------------------
Q 039149 81 GAENQGYDILDTLVRACLLEEVEDDEVKMHDVVRDMALWITCEIE--KEKRNFLVCAGEG-------------------- 138 (536)
Q Consensus 81 ~~~~~~~~~~~~L~~~sl~~~~~~~~~~mhdli~dl~~~i~~~~~--~~~~~~~~~~~~~-------------------- 138 (536)
-++.|+++||++.. .+.++|||++|+||+.+++++. +.++.|++...+.
T Consensus 471 --------~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~ 541 (1153)
T PLN03210 471 --------GLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDI 541 (1153)
T ss_pred --------ChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEecc
Confidence 28999999999885 5789999999999999998753 2334455432100
Q ss_pred --cccC----cccccc-------------------------------ccceEEEeecCCcccccCCCCCCCcceEecccc
Q 039149 139 --LKEA----PDVKRW-------------------------------ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFN 181 (536)
Q Consensus 139 --~~~~----~~~~~~-------------------------------~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~ 181 (536)
..++ ..+..+ .++|.|.+.++.++.+|....+.+|+.|++.++
T Consensus 542 ~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s 621 (1153)
T PLN03210 542 DEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGS 621 (1153)
T ss_pred CccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCc
Confidence 0000 001112 235555555555666666666677777777765
Q ss_pred cchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccC-CCcccchhccCCCCCcEEeccCCCCCCcc
Q 039149 182 ENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHT-GIRELPEELKLLVNLKCLTLRWTFELNKI 260 (536)
Q Consensus 182 ~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~l 260 (536)
.+..++.+ +..+++|++|+|+++..+. .+|. ++.+++|++|++++| .+..+|.+++++++|+.|++++|..++.+
T Consensus 622 -~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 622 -KLEKLWDG-VHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred -cccccccc-cccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 56667666 5777888888887764455 6664 777788888888877 67778888888888888888887777788
Q ss_pred chHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhc------------
Q 039149 261 PRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLS------------ 328 (536)
Q Consensus 261 p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~------------ 328 (536)
|.+ + ++++|++|++++|..... +.. ...+|+.|.+..+....++....
T Consensus 698 p~~-i-~l~sL~~L~Lsgc~~L~~----------------~p~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~ 757 (1153)
T PLN03210 698 PTG-I-NLKSLYRLNLSGCSRLKS----------------FPD--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEM 757 (1153)
T ss_pred CCc-C-CCCCCCEEeCCCCCCccc----------------ccc--ccCCcCeeecCCCcccccccccccccccccccccc
Confidence 774 3 677888888887765431 000 01234444443333222211100
Q ss_pred ---------------CccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCccc
Q 039149 329 ---------------SNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVF 393 (536)
Q Consensus 329 ---------------~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 393 (536)
....+.+|+.|+++++.....++. .++++++|+.|++++|..++.+|... .+
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~~-----------~L 824 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPTGI-----------NL 824 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCCCC-----------Cc
Confidence 001122455555555554444433 45555556666665555555544221 34
Q ss_pred CCccEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccccccccCCC
Q 039149 394 RSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWKP 473 (536)
Q Consensus 394 ~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 473 (536)
++|+.|++++|..+..+|.+ .++|+.|++.++ .++.+| ..+..+++|+.|++.+|.+|+.++...
T Consensus 825 ~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n-~i~~iP------------~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 825 ESLESLDLSGCSRLRTFPDI--STNISDLNLSRT-GIEEVP------------WWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred cccCEEECCCCCcccccccc--ccccCEeECCCC-CCccCh------------HHHhcCCCCCEEECCCCCCcCccCccc
Confidence 55566666655555444322 345555555553 334443 367789999999999999999999888
Q ss_pred cCCCccceEeeccCCCCCCCCCC
Q 039149 474 LPFTHLKEMGVRACDQLEKLPLD 496 (536)
Q Consensus 474 ~~~~~L~~L~i~~C~~L~~lp~~ 496 (536)
..+++|+.+.+.+|++|+.++..
T Consensus 890 ~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 890 SKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred ccccCCCeeecCCCcccccccCC
Confidence 88999999999999999987653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=2.8e-22 Score=225.65 Aligned_cols=309 Identities=20% Similarity=0.180 Sum_probs=188.7
Q ss_pred ccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceE
Q 039149 147 RWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELL 226 (536)
Q Consensus 147 ~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L 226 (536)
.+.++++|++.+|++....+...+++|++|++++|.-...+|.. ++.+++|++|++++| .+.+.+|..++++.+|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccC-cccccCChhhhhCcCCCee
Confidence 45677777777776654333355777788887766333345555 777888888888887 6654677778888888888
Q ss_pred eeccCCCc-ccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCccccccccc
Q 039149 227 DVSHTGIR-ELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELL 305 (536)
Q Consensus 227 ~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (536)
++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|.... ..+..+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~---------------~~p~~l~ 257 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG---------------PIPSSLG 257 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc---------------ccChhHh
Confidence 88887654 56777888888888888877433466765 7788888888888776643 3455667
Q ss_pred CccCCceEEEEecCchh-hHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeeccccccc
Q 039149 306 GLKYLEVLELTLGSYHA-LQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIV 384 (536)
Q Consensus 306 ~l~~L~~L~l~~~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 384 (536)
.+++|+.|.++.+.... ++... ....+|+.|+++++.-....+. .+..+++|+.|+++++.....++...
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~~~---- 328 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSI---FSLQKLISLDLSDNSLSGEIPE--LVIQLQNLEILHLFSNNFTGKIPVAL---- 328 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhH---hhccCcCEEECcCCeeccCCCh--hHcCCCCCcEEECCCCccCCcCChhH----
Confidence 77777777776554321 11111 1123677777776643333322 45667777777777764332222111
Q ss_pred ccccCCcccCCccEEEeecCCCCcCCc-ccccCCCccEEEEecCchhhhhhccCC-cCCc-----------cccccCCCC
Q 039149 385 RKRREPFVFRSLHHVTIWRCAKLKDST-FLVFAPNLKSLVLRNCHAMEEIISVGK-FSEV-----------PEMMRHMSP 451 (536)
Q Consensus 385 ~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~-----------~~~~~~~~~ 451 (536)
+.+++|+.|++++|.-...+| .++.+++|+.|++++|.....++..-. .... ...+.....
T Consensus 329 ------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 329 ------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred ------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 156777777777773222333 356677777777776644333322000 0000 011223455
Q ss_pred CCccceeccccccccccccCCCcCCCccceEeeccCC
Q 039149 452 FENLQRLHVEDLPDLKSIHWKPLPFTHLKEMGVRACD 488 (536)
Q Consensus 452 ~~~L~~L~l~~~~~L~~~~~~~~~~~~L~~L~i~~C~ 488 (536)
+++|+.|++.++.-...++.....+++|+.|+++++.
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 6777777777765444555555667778888887764
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=7.5e-22 Score=222.55 Aligned_cols=324 Identities=22% Similarity=0.265 Sum_probs=240.5
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccCC-CCCCCcceEecccccchhcchhHHhcCCCcccEEEeecccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVN 208 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~ 208 (536)
.++...+..+..+|......+++.|++.++.++.++.. ..+++|+.|+++++..++.+|. +..+++|+.|++++|..
T Consensus 592 r~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~ 669 (1153)
T PLN03210 592 RLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS 669 (1153)
T ss_pred EEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC
Confidence 44555556667777766778999999999999888765 7899999999998878888886 78999999999999967
Q ss_pred ccccCcccccCCCCCceEeeccC-CCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccc
Q 039149 209 LTLKLPLGMSKLGSLELLDVSHT-GIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQA 287 (536)
Q Consensus 209 i~~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 287 (536)
+. .+|.+++++.+|++|++++| .++.+|..+ ++++|+.|++++|..+..+|. + ..+|++|++.++.+...+..
T Consensus 670 L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--~--~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 670 LV-ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--I--STNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred cc-ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc--c--cCCcCeeecCCCcccccccc
Confidence 77 99999999999999999998 889999877 799999999999988888886 3 46788999988875432210
Q ss_pred c----cc-ccccCC-ccc---ccc-----cccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceeccc
Q 039149 288 S----ED-SVLFGG-GEV---LIQ-----ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDA 353 (536)
Q Consensus 288 ~----~~-~~~~~~-~~~---~~~-----~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 353 (536)
. +. +.+... ... ... .....++|+.|.++.+.. +..++......++|+.|++++|..++.++.
T Consensus 744 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~--l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~- 820 (1153)
T PLN03210 744 LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS--LVELPSSIQNLHKLEHLEIENCINLETLPT- 820 (1153)
T ss_pred ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC--ccccChhhhCCCCCCEEECCCCCCcCeeCC-
Confidence 0 00 000000 000 000 001124677777664422 112222222334899999999998888764
Q ss_pred ccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCCc-ccccCCCccEEEEecCchhhh
Q 039149 354 TAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDST-FLVFAPNLKSLVLRNCHAMEE 432 (536)
Q Consensus 354 ~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~ 432 (536)
.+ .+++|++|++++|..++.++. .+.+|+.|+|.++ .++.+| ++..+++|+.|++.+|+.++.
T Consensus 821 -~~-~L~sL~~L~Ls~c~~L~~~p~-------------~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 821 -GI-NLESLESLDLSGCSRLRTFPD-------------ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred -CC-CccccCEEECCCCCccccccc-------------cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCc
Confidence 23 789999999999988776541 4578999999988 777765 578899999999999999998
Q ss_pred hhccCCcCCccccccCCCCCCccceeccccccccccccCCC-------------cCCCccceEeeccCCCCCC
Q 039149 433 IISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWKP-------------LPFTHLKEMGVRACDQLEK 492 (536)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~-------------~~~~~L~~L~i~~C~~L~~ 492 (536)
++. ....+++|+.|++.+|++|+.++... ..+|+...+.+.+|.+|..
T Consensus 885 l~~------------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 885 VSL------------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred cCc------------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 875 56778999999999999998665421 1245556678888888764
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=6.1e-22 Score=222.88 Aligned_cols=333 Identities=17% Similarity=0.169 Sum_probs=212.1
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCccc-ccCC-CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIET-LSEV-PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCV 207 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-l~~~-~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 207 (536)
+.+...+..+........+.+++.|++.+|.+.. +|.. ..+++|++|++++|.-...+|.. ++++++|++|++++|
T Consensus 121 ~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n- 198 (968)
T PLN00113 121 RYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN- 198 (968)
T ss_pred CEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCC-
Confidence 4444444444332223446789999999988763 4443 78899999999987444456665 789999999999999
Q ss_pred cccccCcccccCCCCCceEeeccCCCc-ccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccccccc
Q 039149 208 NLTLKLPLGMSKLGSLELLDVSHTGIR-ELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQ 286 (536)
Q Consensus 208 ~i~~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 286 (536)
.+.+.+|..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|....
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~--- 274 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSG--- 274 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeec---
Confidence 777678989999999999999999776 78888999999999999998444467775 8999999999999887654
Q ss_pred ccccccccCCcccccccccCccCCceEEEEecCch-hhHHHhcCccccccceeEeecccCCcceecccccccccccccce
Q 039149 287 ASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH-ALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNEL 365 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L 365 (536)
..+..+..+++|+.|+++.+... .++.... ..++|+.|++.++.-....+. .+..+++|+.|
T Consensus 275 ------------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L 337 (968)
T PLN00113 275 ------------PIPPSIFSLQKLISLDLSDNSLSGEIPELVI---QLQNLEILHLFSNNFTGKIPV--ALTSLPRLQVL 337 (968)
T ss_pred ------------cCchhHhhccCcCEEECcCCeeccCCChhHc---CCCCCcEEECCCCccCCcCCh--hHhcCCCCCEE
Confidence 23334445555555555544322 1111111 112455555544432222221 34444455555
Q ss_pred ecccccccceeecccc-------------cccccccC-CcccCCccEEEeecCCCCcCC-cccccCCCccEEEEecCchh
Q 039149 366 YINKGFELEELKIDYT-------------EIVRKRRE-PFVFRSLHHVTIWRCAKLKDS-TFLVFAPNLKSLVLRNCHAM 430 (536)
Q Consensus 366 ~l~~~~~l~~l~~~~~-------------~~~~~~~~-~~~~~~L~~L~l~~c~~l~~l-~~l~~l~~L~~L~l~~c~~l 430 (536)
++++|.....++.... ...+.++. .+.+++|+.|.+.++.-...+ ..++.+++|+.|++.+|...
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 5544422111111100 00000000 014566777777776322222 24667888888888887654
Q ss_pred hhhhccCCcCCccccccCCCCCCccceeccccccccccccCCCcCCCccceEeeccCCCCCCCCCCC
Q 039149 431 EEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWKPLPFTHLKEMGVRACDQLEKLPLDS 497 (536)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~ 497 (536)
..+|. ....+++|+.|+++++.-...++.....+++|+.|++.+|.-...+|...
T Consensus 418 ~~~p~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 418 GELPS------------EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred eECCh------------hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 44443 56778999999999885444555555678999999999998777777644
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.9e-24 Score=210.74 Aligned_cols=318 Identities=20% Similarity=0.278 Sum_probs=225.0
Q ss_pred ceEEEecCCCcccCcc-ccccccceEEEeecCCcccccCC-CCCCCcceEecccccchh--cchhHHhcCCCcccEEEee
Q 039149 129 RNFLVCAGEGLKEAPD-VKRWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNENLN--MIADGFFQLMPSLKVLKMS 204 (536)
Q Consensus 129 ~~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~l~--~~~~~~~~~l~~Lr~L~L~ 204 (536)
-.|+...+..+..+|. ...+.+++||++.+|++..+... +.+|.||++++..| +++ .+|.+ +-++..|.+|||+
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~d-iF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTD-IFRLKDLTILDLS 111 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-ccccCCCCch-hcccccceeeecc
Confidence 4788888888888874 56778999999999988876554 88999999999976 443 58887 6789999999999
Q ss_pred ccccccccCcccccCCCCCceEeeccCCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccc
Q 039149 205 NCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 205 ~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 283 (536)
++ .++ +.|..+..-+++-.|+|++|+|..+|.+ +.+|+.|-.||+++| ++..+|+. +..|.+|++|.++++....
T Consensus 112 hN-qL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 112 HN-QLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred hh-hhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhH
Confidence 99 999 9999999999999999999999999977 568999999999997 89999997 9999999999999987754
Q ss_pred cccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceeccccccccccccc
Q 039149 284 FHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLN 363 (536)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~ 363 (536)
..+..|.+++.|++|+++....+ +..++.......+|..++++. .++..++. .+.++++|+
T Consensus 188 ---------------fQLrQLPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~-N~Lp~vPe--cly~l~~Lr 248 (1255)
T KOG0444|consen 188 ---------------FQLRQLPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSE-NNLPIVPE--CLYKLRNLR 248 (1255)
T ss_pred ---------------HHHhcCccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccc-cCCCcchH--HHhhhhhhh
Confidence 45666777777777776643321 111222222222556666653 34444444 566667777
Q ss_pred ceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCCc-ccccCCCccEEEEecC---------------
Q 039149 364 ELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDST-FLVFAPNLKSLVLRNC--------------- 427 (536)
Q Consensus 364 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c--------------- 427 (536)
.|+++++ .++.+..... ...+|++|+++.+ +++.+| .+..++.|+.|.+.++
T Consensus 249 rLNLS~N-~iteL~~~~~----------~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 249 RLNLSGN-KITELNMTEG----------EWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred eeccCcC-ceeeeeccHH----------HHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 7777766 4454443221 3344555555444 444433 2334444444444332
Q ss_pred ---------chhhhhhccCCcCCccccccCCCCCCccceeccccccccccccCCCcCCCccceEeeccCCCCCCCCCC
Q 039149 428 ---------HAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWKPLPFTHLKEMGVRACDQLEKLPLD 496 (536)
Q Consensus 428 ---------~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~ 496 (536)
+.++-+| ..+..+++|+.|.|.. ..|-.+|....-+|.|+.|++++-|+|..-|..
T Consensus 317 ~Levf~aanN~LElVP------------EglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 317 QLEVFHAANNKLELVP------------EGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred hhHHHHhhccccccCc------------hhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 2333333 3677788888888864 477778877777888999999988888876543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=3.4e-22 Score=195.13 Aligned_cols=288 Identities=22% Similarity=0.286 Sum_probs=192.8
Q ss_pred cccccccceEEEeecCCcccccCC-CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCC
Q 039149 144 DVKRWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGS 222 (536)
Q Consensus 144 ~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~ 222 (536)
.+..++.+..|+++.|.+++.|.. ...+++-+|+|++| +++.||...|-++..|-+|||+++ .+. .+|+.+.+|.+
T Consensus 98 diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N-rLe-~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN-RLE-MLPPQIRRLSM 174 (1255)
T ss_pred hhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc-hhh-hcCHHHHHHhh
Confidence 455567777788888877777766 56677778888855 777788777777888888888887 777 78887878888
Q ss_pred CceEeeccCCCc-----ccchhccCCCCCcEEeccCCCC-CCccchHHhhcCccCcEEEeccCcccccccccccccccCC
Q 039149 223 LELLDVSHTGIR-----ELPEELKLLVNLKCLTLRWTFE-LNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGG 296 (536)
Q Consensus 223 L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~-l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 296 (536)
|++|+|++|.+. .+| .|++|++|.++++.+ +..+|.+ +..|.+|+.++++.+...
T Consensus 175 LqtL~Ls~NPL~hfQLrQLP----smtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp-------------- 235 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLP----SMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLP-------------- 235 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCc----cchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCC--------------
Confidence 888888877443 444 466777777777533 3467776 777888888888766554
Q ss_pred cccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceeccccccccee
Q 039149 297 GEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEEL 376 (536)
Q Consensus 297 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l 376 (536)
..++-+-.+++|+.|.++.+....+..-...- .++++|+++.. .++.++. .+..+++|+.|.+.++ .+.
T Consensus 236 --~vPecly~l~~LrrLNLS~N~iteL~~~~~~W---~~lEtLNlSrN-QLt~LP~--avcKL~kL~kLy~n~N-kL~-- 304 (1255)
T KOG0444|consen 236 --IVPECLYKLRNLRRLNLSGNKITELNMTEGEW---ENLETLNLSRN-QLTVLPD--AVCKLTKLTKLYANNN-KLT-- 304 (1255)
T ss_pred --cchHHHhhhhhhheeccCcCceeeeeccHHHH---hhhhhhccccc-hhccchH--HHhhhHHHHHHHhccC-ccc--
Confidence 35566667777777777766654433211111 26677777653 3455544 6777788888877655 221
Q ss_pred ecccccccccccCCcccCCccEEEeecCCCCcCCc-ccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCcc
Q 039149 377 KIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDST-FLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENL 455 (536)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 455 (536)
+.+.|+=+ |.+.+|+.+...++ .++-+| .+..++.|+.|.++++ .+-.+|+ .+.-+|-|
T Consensus 305 ---FeGiPSGI---GKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~N-rLiTLPe------------aIHlL~~l 364 (1255)
T KOG0444|consen 305 ---FEGIPSGI---GKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHN-RLITLPE------------AIHLLPDL 364 (1255)
T ss_pred ---ccCCccch---hhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccc-ceeechh------------hhhhcCCc
Confidence 11111111 37778888888777 666544 5778899999999764 4444554 77889999
Q ss_pred ceeccccccccccccCCCcCCCccceEee
Q 039149 456 QRLHVEDLPDLKSIHWKPLPFTHLKEMGV 484 (536)
Q Consensus 456 ~~L~l~~~~~L~~~~~~~~~~~~L~~L~i 484 (536)
+.|++...|+|.--|.-..+-.+|+.-+|
T Consensus 365 ~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 365 KVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred ceeeccCCcCccCCCCcchhhhcceeeec
Confidence 99999999999754443333334444333
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=7.4e-20 Score=177.74 Aligned_cols=311 Identities=15% Similarity=0.212 Sum_probs=179.8
Q ss_pred cccccceEEEeecCCcccccCCCC-CCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcc-cccCCCCC
Q 039149 146 KRWENVRRLSLMQNQIETLSEVPT-CPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPL-GMSKLGSL 223 (536)
Q Consensus 146 ~~~~~l~~L~l~~~~~~~l~~~~~-~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~-~i~~L~~L 223 (536)
..+.+++.+++..|.++.+|.... ..+|+.|+|..| .+.++..+.+..++.||.|||+.+ .|. ++|. ++..=.++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN-~is-~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRN-LIS-EIPKPSFPAKVNI 175 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhc-hhh-cccCCCCCCCCCc
Confidence 344566777777777777777633 345777777755 666665555777777888888877 777 6663 34455678
Q ss_pred ceEeeccCCCcccch-hccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccc
Q 039149 224 ELLDVSHTGIRELPE-ELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQ 302 (536)
Q Consensus 224 ~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (536)
++|+|++|.|+.+-. .+..|.+|..|.++.| +++.+|..++.+|++|+.|++..+.+.. ...-
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iri---------------ve~l 239 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRI---------------VEGL 239 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceee---------------ehhh
Confidence 888888887776643 3666777888888876 7777887766678888888887776542 1122
Q ss_pred cccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeeccccc
Q 039149 303 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTE 382 (536)
Q Consensus 303 ~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~ 382 (536)
.+..|+.|+.|.+..++.+.++.-. ..-..+++.|+|... .+..+... .+.+++.|+.|+++.+ .++.+..+...
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~--Fy~l~kme~l~L~~N-~l~~vn~g-~lfgLt~L~~L~lS~N-aI~rih~d~Ws 314 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGA--FYGLEKMEHLNLETN-RLQAVNEG-WLFGLTSLEQLDLSYN-AIQRIHIDSWS 314 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcc--eeeecccceeecccc-hhhhhhcc-cccccchhhhhccchh-hhheeecchhh
Confidence 2334444444555555544443210 011125566666532 23333222 5566777777777765 45555443221
Q ss_pred ccccccCCcccCCccEEEeecCCCCcCCcc--cccCCCccEEEEecCchhhhhhccCCcC----------------Cccc
Q 039149 383 IVRKRREPFVFRSLHHVTIWRCAKLKDSTF--LVFAPNLKSLVLRNCHAMEEIISVGKFS----------------EVPE 444 (536)
Q Consensus 383 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~----------------~~~~ 444 (536)
..++|+.|+|+.+ .++.++. +..|..|+.|.++++ .+..+-+..+.+ .++.
T Consensus 315 ---------ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 315 ---------FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred ---------hcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 5667777777766 5555442 333444444444442 222221100000 0000
Q ss_pred cccCCCCCCccceeccccccccccccCC-CcCCCccceEeeccCCCCCCC
Q 039149 445 MMRHMSPFENLQRLHVEDLPDLKSIHWK-PLPFTHLKEMGVRACDQLEKL 493 (536)
Q Consensus 445 ~~~~~~~~~~L~~L~l~~~~~L~~~~~~-~~~~~~L~~L~i~~C~~L~~l 493 (536)
-.....++++|+.|.+.+. ++++++.. +..+++||.|++.+ .-+.++
T Consensus 384 aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~-NaiaSI 431 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGD-NAIASI 431 (873)
T ss_pred chhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCC-Ccceee
Confidence 1124456788888888875 77777753 44578888888877 344444
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=4.1e-19 Score=172.61 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=21.3
Q ss_pred ccCCccEEEeecCCCCcCCc--ccccCCCccEEEEecC
Q 039149 392 VFRSLHHVTIWRCAKLKDST--FLVFAPNLKSLVLRNC 427 (536)
Q Consensus 392 ~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c 427 (536)
.+++|++|.+.|+ +++.++ .+.++++|+.|++.++
T Consensus 390 gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 390 GLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred cchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence 4566666666666 566554 3556666666666654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=2.1e-19 Score=167.25 Aligned_cols=320 Identities=20% Similarity=0.250 Sum_probs=161.8
Q ss_pred ccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCc
Q 039149 145 VKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLE 224 (536)
Q Consensus 145 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~ 224 (536)
.+.++++..+.+..|.+..+|....|+.|..|.+..| .++.+|....+++.+|.+||++.+ .++ ++|++++.|++|.
T Consensus 202 lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN-klk-e~Pde~clLrsL~ 278 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN-KLK-EVPDEICLLRSLE 278 (565)
T ss_pred hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc-ccc-cCchHHHHhhhhh
Confidence 4445555666666666666666666666666666643 566666665566666666666666 666 6666666666666
Q ss_pred eEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCcc--CcEEEe--ccCcccccccccccccccCCcccc
Q 039149 225 LLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSR--LRVLRM--LGTGLLNFHQASEDSVLFGGGEVL 300 (536)
Q Consensus 225 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~--L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~ 300 (536)
+||++++.|..+|.++|+| .|+.|.+.|| .+..+..+++.+=+. |++|.- ...+.... .|.-+. -.+.....
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s-e~~~e~-~~t~~~~~ 354 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS-EGGTET-AMTLPSES 354 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCC-cccccc-cCCCCCCc
Confidence 6666666666666666666 6666666665 455555443322110 111110 00000000 000000 01112223
Q ss_pred cccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeeccc
Q 039149 301 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDY 380 (536)
Q Consensus 301 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 380 (536)
........+.+.|.++....+.++.-........-.++.+++..+ +.++|- .+..+..+.+.-+.....+..++...
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk--~L~~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPK--RLVELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred ccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch-Hhhhhh--hhHHHHHHHHHHHhhcCccccchHHH
Confidence 333444556666666655544443211111111123344444321 222221 33333333333332322222222111
Q ss_pred ccccccccCCcccCCccEEEeecCCCCcCCcc-cccCCCccEEEEecCchhhhhhcc-----------CCcCCccccc-c
Q 039149 381 TEIVRKRREPFVFRSLHHVTIWRCAKLKDSTF-LVFAPNLKSLVLRNCHAMEEIISV-----------GKFSEVPEMM-R 447 (536)
Q Consensus 381 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~-----------~~~~~~~~~~-~ 447 (536)
+.+++|..|+++++ -+.++|. ++.+-.|+.|+|+.+ ....+|.- .....+..+. .
T Consensus 432 ----------~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 432 ----------SQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred ----------Hhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChH
Confidence 14556666666555 3444442 445555666666553 22222210 0000111111 2
Q ss_pred CCCCCCccceeccccccccccccCCCcCCCccceEeeccC
Q 039149 448 HMSPFENLQRLHVEDLPDLKSIHWKPLPFTHLKEMGVRAC 487 (536)
Q Consensus 448 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~L~~L~i~~C 487 (536)
.+..+.+|..|++.+. .++.+|...+.|.+|+.|++.|-
T Consensus 500 ~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred HhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCC
Confidence 4778899999999875 89999999999999999999985
No 11
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.65 E-value=1.3e-16 Score=171.58 Aligned_cols=337 Identities=20% Similarity=0.254 Sum_probs=214.1
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCC--cccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeec
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQ--IETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSN 205 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~ 205 (536)
+.++.-......++......+++.|-+..+. +..++. ...++.||+|++++|..+..+|.. ++.+-+||||++++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccC
Confidence 4455555555556555555679999999886 566665 478999999999999999999998 99999999999999
Q ss_pred cccccccCcccccCCCCCceEeeccC-CCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccccc
Q 039149 206 CVNLTLKLPLGMSKLGSLELLDVSHT-GIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNF 284 (536)
Q Consensus 206 ~~~i~~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~ 284 (536)
+ .+. .+|.++++|+.|.||++..+ .+..+|..+..|++||+|.+.... .. .....++.+.+|++|....+....
T Consensus 605 t-~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~-~~~~~l~el~~Le~L~~ls~~~~s- 679 (889)
T KOG4658|consen 605 T-GIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LS-NDKLLLKELENLEHLENLSITISS- 679 (889)
T ss_pred C-Ccc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cc-cchhhHHhhhcccchhhheeecch-
Confidence 9 999 99999999999999999998 555666666779999999998752 22 112225555566665554443332
Q ss_pred ccccccccccCCcccccccccCccCCceEEEEec-CchhhHHHhcCccccccceeEeecccCCcceecc--cc-ccc-cc
Q 039149 285 HQASEDSVLFGGGEVLIQELLGLKYLEVLELTLG-SYHALQILLSSNKLKSCIRSLFLQLAGDATSIVD--AT-AFA-DL 359 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~-~l~-~~ 359 (536)
...+..+..+..|+++..... ................+|+.|.+.+|...+.... .+ ... .+
T Consensus 680 -------------~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f 746 (889)
T KOG4658|consen 680 -------------VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCF 746 (889)
T ss_pred -------------hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhH
Confidence 122344444444443322111 1122222233333334888899888876533211 00 111 25
Q ss_pred ccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCC-cccccCCCccEEEEecCchhhhhhccCC
Q 039149 360 NHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDS-TFLVFAPNLKSLVLRNCHAMEEIISVGK 438 (536)
Q Consensus 360 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~l~~l~~L~~L~l~~c~~l~~~~~~~~ 438 (536)
+++.++.+.+|...+.+.... .+++|+.|.+..|+.++++ +....+..++.+.+.. ..+....
T Consensus 747 ~~l~~~~~~~~~~~r~l~~~~-----------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~~~l~---- 810 (889)
T KOG4658|consen 747 PNLSKVSILNCHMLRDLTWLL-----------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKLEGLR---- 810 (889)
T ss_pred HHHHHHHhhccccccccchhh-----------ccCcccEEEEecccccccCCCHHHHhhhcccEEecc-cccccce----
Confidence 567777777776666543221 7899999999999888774 4444555555433322 2222221
Q ss_pred cCCccccccCCCCCCccceeccccccccccccCCC----cCCCccceEeeccC-CCCCCCCCCCccccCCceEEEehHhh
Q 039149 439 FSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWKP----LPFTHLKEMGVRAC-DQLEKLPLDSSSAKERKFVIRGEADW 513 (536)
Q Consensus 439 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~----~~~~~L~~L~i~~C-~~L~~lp~~~~~~~~~l~~i~~~~~~ 513 (536)
.....+.|+++..+.+... .|+.+.... +.+|.+.++.|.+| +++..+|.+.. ++.|..+.+-
T Consensus 811 ------~~~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~-----~~~v~~~~~~ 878 (889)
T KOG4658|consen 811 ------MLCSLGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEW-----LEGVYWEDEL 878 (889)
T ss_pred ------eeecCCCCceeEecccCcc-chhheehhcCcccccCccccccceeccccceeecCCccc-----eeeEEehhhh
Confidence 0124455555555555543 255554444 56889999999997 99999997422 5555555443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=5.8e-18 Score=157.73 Aligned_cols=317 Identities=20% Similarity=0.243 Sum_probs=182.9
Q ss_pred ccccceEEEeecCCcccccCC-CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCccccc-CCCCCc
Q 039149 147 RWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMS-KLGSLE 224 (536)
Q Consensus 147 ~~~~l~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~-~L~~L~ 224 (536)
.|+.+++++...|.++.+|.. ..+.+|.-|++..| ++..+|+ |..+..|..|++..+ .|+ .+|.+++ +|.+|.
T Consensus 181 ~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPe--f~gcs~L~Elh~g~N-~i~-~lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN-KIRFLPE--FPGCSLLKELHVGEN-QIE-MLPAEHLKHLNSLL 255 (565)
T ss_pred HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc-ccccCCC--CCccHHHHHHHhccc-HHH-hhHHHHhcccccce
Confidence 356677777777777776665 66777777777765 6777775 777777777777777 777 7777776 688888
Q ss_pred eEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccc
Q 039149 225 LLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQEL 304 (536)
Q Consensus 225 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 304 (536)
+||++.+++++.|.+++.|.+|..||+++| .++.+|.+ +|+| .|+.|-+.|+.......+- +..+....++-+
T Consensus 256 vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~i----i~~gT~~vLKyL 328 (565)
T KOG0472|consen 256 VLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGNPLRTIRREI----ISKGTQEVLKYL 328 (565)
T ss_pred eeeccccccccCchHHHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCCchHHHHHHH----HcccHHHHHHHH
Confidence 888888888888888888888888888886 78888887 8888 7888888877654310000 000011111111
Q ss_pred cCccCCceEEEEecCc---h--hhHH--HhcCccccccceeEeecccCCcceecccccc--cccccccceecccccccce
Q 039149 305 LGLKYLEVLELTLGSY---H--ALQI--LLSSNKLKSCIRSLFLQLAGDATSIVDATAF--ADLNHLNELYINKGFELEE 375 (536)
Q Consensus 305 ~~l~~L~~L~l~~~~~---~--~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~l~~ 375 (536)
.+- .+.=+++.... + ..+. ++.. ....+.+.|++++- .++.+|.. .+ +.-.-....+++.+ .+.+
T Consensus 329 rs~--~~~dglS~se~~~e~~~t~~~~~~~~~-~~~i~tkiL~~s~~-qlt~VPdE-Vfea~~~~~Vt~VnfskN-qL~e 402 (565)
T KOG0472|consen 329 RSK--IKDDGLSQSEGGTETAMTLPSESFPDI-YAIITTKILDVSDK-QLTLVPDE-VFEAAKSEIVTSVNFSKN-QLCE 402 (565)
T ss_pred HHh--hccCCCCCCcccccccCCCCCCcccch-hhhhhhhhhccccc-ccccCCHH-HHHHhhhcceEEEecccc-hHhh
Confidence 110 00000000000 0 0000 0010 01114555665542 23333321 22 22223556666665 5555
Q ss_pred eecccccccccccCCcccCCccE-EEeecCCCCcCCc-ccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCC
Q 039149 376 LKIDYTEIVRKRREPFVFRSLHH-VTIWRCAKLKDST-FLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFE 453 (536)
Q Consensus 376 l~~~~~~~~~~~~~~~~~~~L~~-L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~ 453 (536)
+|.... .+..+.+ +.+++. .+..++ .+..+++|..|++++ +.+.++|. .++.+-
T Consensus 403 lPk~L~----------~lkelvT~l~lsnn-~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~------------e~~~lv 458 (565)
T KOG0472|consen 403 LPKRLV----------ELKELVTDLVLSNN-KISFVPLELSQLQKLTFLDLSN-NLLNDLPE------------EMGSLV 458 (565)
T ss_pred hhhhhH----------HHHHHHHHHHhhcC-ccccchHHHHhhhcceeeeccc-chhhhcch------------hhhhhh
Confidence 553321 2233333 334333 444443 367899999999998 47777776 445555
Q ss_pred ccceeccccc----------------------cccccccCC-CcCCCccceEeeccCCCCCCCCCCCccccCCceEE
Q 039149 454 NLQRLHVEDL----------------------PDLKSIHWK-PLPFTHLKEMGVRACDQLEKLPLDSSSAKERKFVI 507 (536)
Q Consensus 454 ~L~~L~l~~~----------------------~~L~~~~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i 507 (536)
.|+.|+++.. .++.+++.. .+.|.+|..|++.+ ..+..+|...... ++++.+
T Consensus 459 ~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgnm-tnL~hL 533 (565)
T KOG0472|consen 459 RLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNM-TNLRHL 533 (565)
T ss_pred hhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccc-cceeEE
Confidence 6777766642 123333332 55688999999987 6788888766554 455443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=6.5e-15 Score=155.21 Aligned_cols=255 Identities=21% Similarity=0.218 Sum_probs=155.3
Q ss_pred ccceEEEecCCCcccCccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecc
Q 039149 127 EKRNFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNC 206 (536)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 206 (536)
++...+.+....+..+|.... .+++.|++.+|+++.+|.. .++|++|++++| .++.+|.. .++|+.|+++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~l----p~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL--PPELRTLEVSGN-QLTSLPVL----PPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC--CCCCcEEEecCC-ccCcccCc----ccccceeeccCC
Confidence 345666677777777775333 4678888888888777753 577888888866 67666642 357778888887
Q ss_pred ccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccccccc
Q 039149 207 VNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQ 286 (536)
Q Consensus 207 ~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 286 (536)
.+. .+|.. ..+|+.|++++|+++.+|.. +++|+.|++++| .++.+|.. . .+|+.|++.+|.+..
T Consensus 273 -~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N~L~~--- 336 (788)
T PRK15387 273 -PLT-HLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNNQLTS--- 336 (788)
T ss_pred -chh-hhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccccccccCcccc---
Confidence 777 77652 35677788888888777753 467888888876 67777652 2 356667777665532
Q ss_pred ccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceeccccccccccccccee
Q 039149 287 ASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELY 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~ 366 (536)
+..+ ..+|+.|+++.+....++.+ +.+|+.|.+++. .+..++. .+.+|+.|+
T Consensus 337 --------------LP~l--p~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N-~L~~LP~-----l~~~L~~Ld 388 (788)
T PRK15387 337 --------------LPTL--PSGLQELSVSDNQLASLPTL------PSELYKLWAYNN-RLTSLPA-----LPSGLKELI 388 (788)
T ss_pred --------------cccc--ccccceEecCCCccCCCCCC------Ccccceehhhcc-ccccCcc-----cccccceEE
Confidence 1111 13577777776665544332 225666666543 2232221 124567777
Q ss_pred cccccccceeecccccccccccCCcccCCccEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCCccccc
Q 039149 367 INKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMM 446 (536)
Q Consensus 367 l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 446 (536)
++++ .+..++. .+++|+.|+++++ .+..+|.+ +.+|+.|+++++ .++.+|.
T Consensus 389 Ls~N-~Lt~LP~-------------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~N-qLt~LP~----------- 439 (788)
T PRK15387 389 VSGN-RLTSLPV-------------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRN-QLTRLPE----------- 439 (788)
T ss_pred ecCC-cccCCCC-------------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccC-cccccCh-----------
Confidence 7665 3333321 3456777777776 56655532 345666777664 3455543
Q ss_pred cCCCCCCccceeccccc
Q 039149 447 RHMSPFENLQRLHVEDL 463 (536)
Q Consensus 447 ~~~~~~~~L~~L~l~~~ 463 (536)
.+..+++|+.|+|+++
T Consensus 440 -sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 440 -SLIHLSSETTVNLEGN 455 (788)
T ss_pred -HHhhccCCCeEECCCC
Confidence 4555677777777765
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=1e-14 Score=154.67 Aligned_cols=116 Identities=24% Similarity=0.390 Sum_probs=54.3
Q ss_pred ceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeecc
Q 039149 151 VRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSH 230 (536)
Q Consensus 151 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~ 230 (536)
...+.+.++.++.+|... .++|+.|++++| .++.+|..++ .+|++|++++| .++ .+|..+. .+|+.|++++
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N-~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNN-ELKSLPENLQ---GNIKTLYANSN-QLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCC-CCCcCChhhc---cCCCEEECCCC-ccc-cCChhhh--ccccEEECcC
Confidence 344445444444444321 234555555543 4445544321 34555555555 555 5554332 2455555555
Q ss_pred CCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcc
Q 039149 231 TGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGL 281 (536)
Q Consensus 231 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 281 (536)
|.+..+|..+. .+|+.|++++| .++.+|.. +. ++|+.|++++|..
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSI 295 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCcc
Confidence 55555554432 34555555544 44455543 22 3455555555443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=3.8e-14 Score=149.46 Aligned_cols=255 Identities=20% Similarity=0.199 Sum_probs=188.5
Q ss_pred cceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeec
Q 039149 150 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVS 229 (536)
Q Consensus 150 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~ 229 (536)
+-..|++..+.++.+|... .++|+.|.+.+| .++.+|. ..++|++|++++| .++ .+|.. ..+|++|+++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N-~Lt~LP~----lp~~Lk~LdLs~N-~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDN-NLTSLPA----LPPELRTLEVSGN-QLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCC-cCCCCCC----CCCCCcEEEecCC-ccC-cccCc---ccccceeecc
Confidence 3567888888888888753 258999999976 7888875 2588999999999 999 88863 4688999999
Q ss_pred cCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccC
Q 039149 230 HTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKY 309 (536)
Q Consensus 230 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 309 (536)
+|.+..+|.. ..+|+.|++.+| .++.+|.. +++|+.|++++|.+.. +..+ ..+
T Consensus 271 ~N~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~L~~-----------------Lp~l--p~~ 323 (788)
T PRK15387 271 SNPLTHLPAL---PSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLAS-----------------LPAL--PSE 323 (788)
T ss_pred CCchhhhhhc---hhhcCEEECcCC-cccccccc----ccccceeECCCCcccc-----------------CCCC--ccc
Confidence 9999888864 367889999998 88888862 4789999999987653 1111 134
Q ss_pred CceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccC
Q 039149 310 LEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRRE 389 (536)
Q Consensus 310 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 389 (536)
|+.|.+..+....++.+ +.+|+.|+++++ .++.++. ..++|+.|+++++ .+..++.
T Consensus 324 L~~L~Ls~N~L~~LP~l------p~~Lq~LdLS~N-~Ls~LP~-----lp~~L~~L~Ls~N-~L~~LP~----------- 379 (788)
T PRK15387 324 LCKLWAYNNQLTSLPTL------PSGLQELSVSDN-QLASLPT-----LPSELYKLWAYNN-RLTSLPA----------- 379 (788)
T ss_pred ccccccccCcccccccc------ccccceEecCCC-ccCCCCC-----CCcccceehhhcc-ccccCcc-----------
Confidence 66677776666555432 248899999874 4444432 1357888888776 4544431
Q ss_pred CcccCCccEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccccccc
Q 039149 390 PFVFRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSI 469 (536)
Q Consensus 390 ~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 469 (536)
.+++|+.|+++++ .++.+|.. .++|+.|+++++. +..+|. .+.+|+.|++.++ +++.+
T Consensus 380 --l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~---------------l~~~L~~L~Ls~N-qLt~L 437 (788)
T PRK15387 380 --LPSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYRN-QLTRL 437 (788)
T ss_pred --cccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc---------------chhhhhhhhhccC-ccccc
Confidence 3468999999998 67777643 4789999999974 555543 2457889999886 68888
Q ss_pred cCCCcCCCccceEeeccCC
Q 039149 470 HWKPLPFTHLKEMGVRACD 488 (536)
Q Consensus 470 ~~~~~~~~~L~~L~i~~C~ 488 (536)
|.....+++|+.|++++.+
T Consensus 438 P~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ChHHhhccCCCeEECCCCC
Confidence 8877889999999998864
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=9.2e-16 Score=157.28 Aligned_cols=268 Identities=22% Similarity=0.274 Sum_probs=188.2
Q ss_pred ccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEee
Q 039149 149 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDV 228 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L 228 (536)
.++++|....|.+..+.......+|.+++++.+ .+..+| +.++.+.+|..|+..++ .+. .+|..|....+|++|++
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp-~wi~~~~nle~l~~n~N-~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLP-EWIGACANLEALNANHN-RLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchh-hhhcch-HHHHhcccceEecccch-hHH-hhHHHHhhhhhHHHHHh
Confidence 467777777777765555566778888888866 788888 55888999999999998 888 88888888999999999
Q ss_pred ccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCcc-CcEEEeccCcccccccccccccccCCcccccccccCc
Q 039149 229 SHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSR-LRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGL 307 (536)
Q Consensus 229 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 307 (536)
..|.++.+|.....+..|++|++..| .+..+|+..+..+.. |+.|+.+.+.....+ ..++ ..+
T Consensus 295 ~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp--------------~~~e-~~~ 358 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLP--------------SYEE-NNH 358 (1081)
T ss_pred hhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccc--------------cccc-hhh
Confidence 99999888888888899999999887 888888865554443 666666655543311 0000 012
Q ss_pred cCCceEEEEecCc--hhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccc
Q 039149 308 KYLEVLELTLGSY--HALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVR 385 (536)
Q Consensus 308 ~~L~~L~l~~~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 385 (536)
..|+.|.+..+.. ..++.+... .+|+.|+|++. .+...+.. .+.++..|++|+++|+ .++.++....
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~----~hLKVLhLsyN-rL~~fpas-~~~kle~LeeL~LSGN-kL~~Lp~tva---- 427 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNF----KHLKVLHLSYN-RLNSFPAS-KLRKLEELEELNLSGN-KLTTLPDTVA---- 427 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccc----cceeeeeeccc-ccccCCHH-HHhchHHhHHHhcccc-hhhhhhHHHH----
Confidence 2334444433322 122222222 26777777653 33444433 7888999999999998 7888875443
Q ss_pred cccCCcccCCccEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccc
Q 039149 386 KRREPFVFRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPD 465 (536)
Q Consensus 386 ~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 465 (536)
.++.|++|...++ .+..+|-+..++.|+.++++. +.+..+.- +..... |+|++|+++|...
T Consensus 428 ------~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l----------~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 428 ------NLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSC-NNLSEVTL----------PEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred ------hhhhhHHHhhcCC-ceeechhhhhcCcceEEeccc-chhhhhhh----------hhhCCC-cccceeeccCCcc
Confidence 7889999988877 788888889999999999975 56666532 112222 8999999998765
Q ss_pred c
Q 039149 466 L 466 (536)
Q Consensus 466 L 466 (536)
+
T Consensus 489 l 489 (1081)
T KOG0618|consen 489 L 489 (1081)
T ss_pred c
Confidence 3
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=3e-16 Score=129.80 Aligned_cols=164 Identities=23% Similarity=0.395 Sum_probs=124.5
Q ss_pred CcccCccccccccceEEEeecCCcccccCC-CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCccc
Q 039149 138 GLKEAPDVKRWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLG 216 (536)
Q Consensus 138 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~ 216 (536)
.+.+++....++++.+|.+++|.+..+|+. ..+.+|++|.+.. ..++++|.+ ++.+++||.|++.-+ .+. .+|..
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~-issl~klr~lnvgmn-rl~-~lprg 97 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTS-ISSLPKLRILNVGMN-RLN-ILPRG 97 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChh-hhhchhhhheecchh-hhh-cCccc
Confidence 345566666677788888888888777665 7788888888884 478888877 788888888888877 777 78888
Q ss_pred ccCCCCCceEeeccCCCc--ccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccccccccccccccc
Q 039149 217 MSKLGSLELLDVSHTGIR--ELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLF 294 (536)
Q Consensus 217 i~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 294 (536)
+|.++-|+.||+.++++. .+|..+-.|+-|+.|++++| ....+|+. ++++++||.|.+..+...
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll------------ 163 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL------------ 163 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh------------
Confidence 888888888888887554 77777777888888888886 67778877 888888888888877665
Q ss_pred CCcccccccccCccCCceEEEEecCchhh
Q 039149 295 GGGEVLIQELLGLKYLEVLELTLGSYHAL 323 (536)
Q Consensus 295 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 323 (536)
..+.+++.+..|++|++..+....+
T Consensus 164 ----~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 164 ----SLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred ----hCcHHHHHHHHHHHHhcccceeeec
Confidence 3567777777777777776655444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=1.2e-13 Score=146.52 Aligned_cols=117 Identities=25% Similarity=0.391 Sum_probs=56.9
Q ss_pred ccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEee
Q 039149 149 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDV 228 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L 228 (536)
.+++.|++.+|.++.+|... +++|++|++++| .++.+|..+. .+|+.|+|++| .+. .+|..+. .+|++|++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N-~LtsLP~~l~---~~L~~L~Ls~N-~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL-QGNIKTLYANSN-QLTSIPATLP---DTIQEMELSIN-RIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCcCChhh-ccCCCEEECCCC-ccccCChhhh---ccccEEECcCC-ccC-cCChhHh--CCCCEEEC
Confidence 34555555555555554431 235555555544 4445544321 24555555555 555 5554443 34555555
Q ss_pred ccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCc
Q 039149 229 SHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTG 280 (536)
Q Consensus 229 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 280 (536)
++|++..+|..+. .+|+.|++++| .++.+|.. +. ++|+.|++++|.
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNS 315 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCc
Confidence 5555555554432 35555555554 45555543 21 244445554443
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=2.8e-15 Score=124.11 Aligned_cols=144 Identities=31% Similarity=0.493 Sum_probs=127.6
Q ss_pred cCCCcccC-ccccccccceEEEeecCCcccccCC-CCCCCcceEecccccchhcchhHHhcCCCcccEEEeecccccc-c
Q 039149 135 AGEGLKEA-PDVKRWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLT-L 211 (536)
Q Consensus 135 ~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~-~ 211 (536)
+.+.+..+ |.+..+.+++.|.+.+|.++++|.. +.+++||.|.+..| .+..+|.+ |+.++.|++|||.++ ++. .
T Consensus 41 SHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprg-fgs~p~levldltyn-nl~e~ 117 (264)
T KOG0617|consen 41 SHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRG-FGSFPALEVLDLTYN-NLNEN 117 (264)
T ss_pred ccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccc-cCCCchhhhhhcccc-ccccc
Confidence 33444444 5677788999999999999999987 89999999999966 78888988 899999999999998 775 3
Q ss_pred cCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccc
Q 039149 212 KLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 212 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 283 (536)
.+|..+..+.-|+.|.++.+.++.+|..+++|++|+.|.++.| .+-.+|.+ ++.++.|++|++.++....
T Consensus 118 ~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 118 SLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceeee
Confidence 5888888899999999999999999999999999999999998 78899998 9999999999999988764
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=2e-14 Score=147.64 Aligned_cols=280 Identities=19% Similarity=0.231 Sum_probs=164.3
Q ss_pred CCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEE
Q 039149 170 CPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCL 249 (536)
Q Consensus 170 ~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 249 (536)
+-+|++|+++.| .+..+|.. +..+.+|+.|+++.+ .|. +.|.+++++.+|++|.|.++.+..+|.++..+.+|+.|
T Consensus 44 ~v~L~~l~lsnn-~~~~fp~~-it~l~~L~~ln~s~n-~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 44 RVKLKSLDLSNN-QISSFPIQ-ITLLSHLRQLNLSRN-YIR-SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL 119 (1081)
T ss_pred eeeeEEeecccc-ccccCCch-hhhHHHHhhcccchh-hHh-hCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence 344777777743 66666655 667777777777777 777 77777777777777777777777777777777777777
Q ss_pred eccCCCCCCccchHHhhcCccCcEEEeccCcccccccccc-----cccccCCcccccccccCccCCceEEEEecCchhhH
Q 039149 250 TLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASE-----DSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ 324 (536)
Q Consensus 250 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 324 (536)
++++| .+..+|.- +..++.+..+..+++.... ..|.. ...........+.++..+++ .|+++.+.....
T Consensus 120 dlS~N-~f~~~Pl~-i~~lt~~~~~~~s~N~~~~-~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~- 193 (1081)
T KOG0618|consen 120 DLSFN-HFGPIPLV-IEVLTAEEELAASNNEKIQ-RLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL- 193 (1081)
T ss_pred ccchh-ccCCCchh-HHhhhHHHHHhhhcchhhh-hhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh-
Confidence 77776 66667763 6667666666666651111 00000 00011112233444444444 355554443311
Q ss_pred HHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecC
Q 039149 325 ILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRC 404 (536)
Q Consensus 325 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 404 (536)
.+.... +|+.+.... ..+..+ .-.-++|+.|+.+.|+-. .+... . .+.+|+.++++..
T Consensus 194 dls~~~----~l~~l~c~r-n~ls~l-----~~~g~~l~~L~a~~n~l~-~~~~~----------p-~p~nl~~~dis~n 251 (1081)
T KOG0618|consen 194 DLSNLA----NLEVLHCER-NQLSEL-----EISGPSLTALYADHNPLT-TLDVH----------P-VPLNLQYLDISHN 251 (1081)
T ss_pred hhhhcc----chhhhhhhh-cccceE-----EecCcchheeeeccCcce-eeccc----------c-ccccceeeecchh
Confidence 111100 222222111 011111 112345666666665433 22111 1 6778999999887
Q ss_pred CCCcCC-cccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccccccccCCCcCCCccceEe
Q 039149 405 AKLKDS-TFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWKPLPFTHLKEMG 483 (536)
Q Consensus 405 ~~l~~l-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~L~~L~ 483 (536)
++..+ .|++.+++|+.|.+.++ .+..++. .+....+|+.|.+..+ .++.++.....+.+|+.|+
T Consensus 252 -~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~------------ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 252 -NLSNLPEWIGACANLEALNANHN-RLVALPL------------RISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred -hhhcchHHHHhcccceEecccch-hHHhhHH------------HHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeee
Confidence 56554 47889999999999875 4466654 4455667777777776 6777777766777888888
Q ss_pred eccCCCCCCCCCCC
Q 039149 484 VRACDQLEKLPLDS 497 (536)
Q Consensus 484 i~~C~~L~~lp~~~ 497 (536)
++. .+|..+|..+
T Consensus 317 L~~-N~L~~lp~~~ 329 (1081)
T KOG0618|consen 317 LQS-NNLPSLPDNF 329 (1081)
T ss_pred ehh-ccccccchHH
Confidence 876 5777777643
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.31 E-value=4.3e-14 Score=132.04 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=38.2
Q ss_pred cccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCCc--ccccCCCccEEEEecC
Q 039149 355 AFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDST--FLVFAPNLKSLVLRNC 427 (536)
Q Consensus 355 ~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c 427 (536)
.+..+++|++|+++++ .++.+...++. ....++.|.|..+ ++..+. .+..+..|+.|+++++
T Consensus 269 cf~~L~~L~~lnlsnN-~i~~i~~~aFe---------~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNN-KITRIEDGAFE---------GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred HHhhcccceEeccCCC-ccchhhhhhhc---------chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC
Confidence 5777888888888776 55555433332 4556666666666 455433 2446666777777664
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.26 E-value=2.6e-13 Score=126.89 Aligned_cols=267 Identities=19% Similarity=0.212 Sum_probs=154.4
Q ss_pred CcceEecccccchhcchhHHhcCCCcccEEEeeccccccccC-cccccCCCCCceEeecc-CCCcccchh-ccCCCCCcE
Q 039149 172 HLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLGSLELLDVSH-TGIRELPEE-LKLLVNLKC 248 (536)
Q Consensus 172 ~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~~L~~L~L~~-~~i~~lp~~-i~~L~~L~~ 248 (536)
.-..+.|..| .++.+|++.|+.+++||.|||+++ .|+ .+ |+.+..|.+|-.|-+.+ ++|+.+|+. ++.|..|+.
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N-~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKN-NIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceeccccc-chh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 3455666655 788888888888888888888888 887 54 77788888888887777 688888865 778888888
Q ss_pred EeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHHH--
Q 039149 249 LTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQIL-- 326 (536)
Q Consensus 249 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l-- 326 (536)
|.+.-| ++..++.+++..|++|..|.+.++.+.. ..-..+..+..++++++..+.....-.+
T Consensus 145 LllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~---------------i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 145 LLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQS---------------ICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred HhcChh-hhcchhHHHHHHhhhcchhcccchhhhh---------------hccccccchhccchHhhhcCccccccccch
Confidence 888876 7777887778888888888888776543 1222444555566555554332111000
Q ss_pred ----h----cCccccccceeEeecccCCcceecccccccccccccce---ecccccccceeecccccccccccCCcccCC
Q 039149 327 ----L----SSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNEL---YINKGFELEELKIDYTEIVRKRREPFVFRS 395 (536)
Q Consensus 327 ----~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L---~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 395 (536)
. ....-........+.+.. ..... .-.....++.+ -.+.|.-....|...+ ..+++
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~R-i~q~~---a~kf~c~~esl~s~~~~~d~~d~~cP~~cf---------~~L~~ 275 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKR-INQED---ARKFLCSLESLPSRLSSEDFPDSICPAKCF---------KKLPN 275 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHH-hcccc---hhhhhhhHHhHHHhhccccCcCCcChHHHH---------hhccc
Confidence 0 000000000000000000 00000 00000011111 0011101111111111 27888
Q ss_pred ccEEEeecCCCCcCC--cccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccccccccC-C
Q 039149 396 LHHVTIWRCAKLKDS--TFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHW-K 472 (536)
Q Consensus 396 L~~L~l~~c~~l~~l--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~-~ 472 (536)
|++|+++++ .++.+ .++..+..+++|.+..+ .++.+.. ..+.++..|+.|+|.+. +++.+.+ .
T Consensus 276 L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~-----------~~f~~ls~L~tL~L~~N-~it~~~~~a 341 (498)
T KOG4237|consen 276 LRKLNLSNN-KITRIEDGAFEGAAELQELYLTRN-KLEFVSS-----------GMFQGLSGLKTLSLYDN-QITTVAPGA 341 (498)
T ss_pred ceEeccCCC-ccchhhhhhhcchhhhhhhhcCcc-hHHHHHH-----------HhhhccccceeeeecCC-eeEEEeccc
Confidence 999999888 67765 35778888999998774 5665533 24567788888999886 4554433 3
Q ss_pred CcCCCccceEee
Q 039149 473 PLPFTHLKEMGV 484 (536)
Q Consensus 473 ~~~~~~L~~L~i 484 (536)
+..+.+|..|.+
T Consensus 342 F~~~~~l~~l~l 353 (498)
T KOG4237|consen 342 FQTLFSLSTLNL 353 (498)
T ss_pred ccccceeeeeeh
Confidence 444556666665
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=1.4e-11 Score=120.95 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=18.2
Q ss_pred ccCCccEEEeecCCCCcC--Ccccc-----cCCCccEEEEecCc
Q 039149 392 VFRSLHHVTIWRCAKLKD--STFLV-----FAPNLKSLVLRNCH 428 (536)
Q Consensus 392 ~~~~L~~L~l~~c~~l~~--l~~l~-----~l~~L~~L~l~~c~ 428 (536)
.+++|+.|++++| .+.+ +..+. ..+.|+.|++.+|.
T Consensus 219 ~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 219 SLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred ccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 4556666666666 3432 11111 13566666666653
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=2.4e-11 Score=119.29 Aligned_cols=69 Identities=19% Similarity=0.124 Sum_probs=37.8
Q ss_pred cccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcC------CcccccCCCccEEEEecCc
Q 039149 355 AFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKD------STFLVFAPNLKSLVLRNCH 428 (536)
Q Consensus 355 ~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~------l~~l~~l~~L~~L~l~~c~ 428 (536)
.+..+++|++|++++|. +......... ..+.. ..+.|++|++.+| .+++ ...+..+++|++++++++.
T Consensus 216 ~~~~~~~L~~L~ls~n~-l~~~~~~~l~--~~~~~--~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 216 TLASLKSLEVLNLGDNN-LTDAGAAALA--SALLS--PNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HhcccCCCCEEecCCCc-CchHHHHHHH--HHHhc--cCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 34556778888888763 3221111000 00000 2468899999888 5542 1123455778888887765
Q ss_pred h
Q 039149 429 A 429 (536)
Q Consensus 429 ~ 429 (536)
.
T Consensus 290 l 290 (319)
T cd00116 290 F 290 (319)
T ss_pred C
Confidence 4
No 25
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.05 E-value=8.8e-11 Score=113.33 Aligned_cols=74 Identities=38% Similarity=0.785 Sum_probs=63.8
Q ss_pred CchhHHHHHHHHHccccccCCchhhhHHHHHHhhcCCCchhHhHHHhhcccCCCCcccCHHHHHHHHHHhCCCCC
Q 039149 2 KAEHWRRAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLGE 76 (536)
Q Consensus 2 ~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~lk~cFl~~a~fp~~~~i~~~~Li~~Wia~g~i~~ 76 (536)
+..+|+.+++.+........+....+..++.+||+.||+ ++|+||+|||+||+++.|+++.||++|+++|||..
T Consensus 211 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 211 TVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccccccccccccccccccccccccccceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 467999999998888655444455899999999999999 99999999999999999999999999999999987
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=1.5e-11 Score=120.49 Aligned_cols=166 Identities=22% Similarity=0.239 Sum_probs=90.5
Q ss_pred eEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCC
Q 039149 175 TLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWT 254 (536)
Q Consensus 175 ~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~ 254 (536)
..+++.| .+..+|.. ++.+-.|..|.|..+ .+. .+|..+++|..|.||+|+.|.+..+|..++.|+ |+.|-+.+|
T Consensus 79 ~aDlsrN-R~~elp~~-~~~f~~Le~liLy~n-~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRN-RFSELPEE-ACAFVSLESLILYHN-CIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhcccc-ccccCchH-HHHHHHHHHHHHHhc-cce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 3444433 44455544 455555555555555 555 555555555555555555555555555555554 555555554
Q ss_pred CCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccc
Q 039149 255 FELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKS 334 (536)
Q Consensus 255 ~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~ 334 (536)
+++.+|.+ |+.+..|.+|+.+.|.+. ..+.++..+..|+.|.+..+....++.-....
T Consensus 154 -kl~~lp~~-ig~~~tl~~ld~s~nei~----------------slpsql~~l~slr~l~vrRn~l~~lp~El~~L---- 211 (722)
T KOG0532|consen 154 -KLTSLPEE-IGLLPTLAHLDVSKNEIQ----------------SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL---- 211 (722)
T ss_pred -ccccCCcc-cccchhHHHhhhhhhhhh----------------hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC----
Confidence 55555555 555555555555555443 23445555555555555444444333222222
Q ss_pred cceeEeecccCCcceecccccccccccccceecccc
Q 039149 335 CIRSLFLQLAGDATSIVDATAFADLNHLNELYINKG 370 (536)
Q Consensus 335 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 370 (536)
.|.+|+++ |.++..++. .+.+|..|+.|.|.++
T Consensus 212 pLi~lDfS-cNkis~iPv--~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 212 PLIRLDFS-CNKISYLPV--DFRKMRHLQVLQLENN 244 (722)
T ss_pred ceeeeecc-cCceeecch--hhhhhhhheeeeeccC
Confidence 45566665 455666665 6777777777777766
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.99 E-value=2.1e-11 Score=115.27 Aligned_cols=105 Identities=18% Similarity=0.170 Sum_probs=57.6
Q ss_pred cceEEEeecCCcccccCC----CCCCCcceEecccccchhcch-hHHhcCCCcccEEEeeccccccccCccccc-CCCCC
Q 039149 150 NVRRLSLMQNQIETLSEV----PTCPHLLTLFLDFNENLNMIA-DGFFQLMPSLKVLKMSNCVNLTLKLPLGMS-KLGSL 223 (536)
Q Consensus 150 ~l~~L~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~~l~~~~-~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~-~L~~L 223 (536)
.++.+++.+..-....+. ..|+++..|.+.+|..+++.. .++-..+++|++|++..|..+++..-..+. .+.+|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 456666666543332222 677777777777776655432 333456777777777776555522222222 36777
Q ss_pred ceEeeccC-CCcc--cchhccCCCCCcEEeccCC
Q 039149 224 ELLDVSHT-GIRE--LPEELKLLVNLKCLTLRWT 254 (536)
Q Consensus 224 ~~L~L~~~-~i~~--lp~~i~~L~~L~~L~l~~~ 254 (536)
.||++++| .|.. +-.-.....+++.+..+||
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 77777777 4432 1111233444555555555
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=4.5e-10 Score=97.51 Aligned_cols=125 Identities=28% Similarity=0.351 Sum_probs=41.6
Q ss_pred ccceEEEeecCCcccccCCC-CCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCccccc-CCCCCceE
Q 039149 149 ENVRRLSLMQNQIETLSEVP-TCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMS-KLGSLELL 226 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~-~L~~L~~L 226 (536)
.+.+.|++.++.+..+.... .+.+|++|++++| .++.++. +..++.|+.|+++++ .|+ .+++.+. .+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N-~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNN-RIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS-----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCC-CCC-ccccchHHhCCcCCEE
Confidence 45677777777776665553 4667777777755 5666654 566777777777777 676 6654442 46777777
Q ss_pred eeccCCCcccc--hhccCCCCCcEEeccCCCCCCccc---hHHhhcCccCcEEEeccC
Q 039149 227 DVSHTGIRELP--EELKLLVNLKCLTLRWTFELNKIP---RQLISNSSRLRVLRMLGT 279 (536)
Q Consensus 227 ~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp---~~~i~~l~~L~~L~l~~~ 279 (536)
++++|+|..+- ..+..+++|+.|++.+| .+..-+ .-++..+++|+.|+....
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEc
Confidence 77777665442 23556677777777766 333222 234566777777765544
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.95 E-value=3.5e-11 Score=113.76 Aligned_cols=295 Identities=16% Similarity=0.155 Sum_probs=157.6
Q ss_pred CCcceEecccccchhcch-hHHhcCCCcccEEEeeccccccccCccccc-CCCCCceEeeccC-CCccc--chhccCCCC
Q 039149 171 PHLLTLFLDFNENLNMIA-DGFFQLMPSLKVLKMSNCVNLTLKLPLGMS-KLGSLELLDVSHT-GIREL--PEELKLLVN 245 (536)
Q Consensus 171 ~~Lr~L~l~~~~~l~~~~-~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~-~L~~L~~L~L~~~-~i~~l--p~~i~~L~~ 245 (536)
..|+.|.+.|+.....-+ ..+...++++..|.+.+|..+++..-.+++ .+.+|++|++..| .++.. -.-....++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 567888888775444322 334567788888888888555533223333 3777888888776 55422 112334677
Q ss_pred CcEEeccCCCCCCc--cchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccc-cCccCCceEEEEecCchh
Q 039149 246 LKCLTLRWTFELNK--IPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQEL-LGLKYLEVLELTLGSYHA 322 (536)
Q Consensus 246 L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~ 322 (536)
|++|+++.|..++. +.. ...++.+++.+...||...+. ..+... .....+-++++..+...+
T Consensus 218 L~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~l--------------e~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELEL--------------EALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred HHHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccH--------------HHHHHHhccChHhhccchhhhcccc
Confidence 78888887765553 211 134555566666666644320 011110 111112222211111111
Q ss_pred hHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEee
Q 039149 323 LQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIW 402 (536)
Q Consensus 323 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 402 (536)
-..+.........|+.|..++|...++..+...-.+.++|+.|.+.+|..+........+ .+++.|+.+.+.
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~--------rn~~~Le~l~~e 354 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG--------RNCPHLERLDLE 354 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh--------cCChhhhhhccc
Confidence 111111122223667777777777665544323345677777777777665554443332 166777777777
Q ss_pred cCCCCcCC--ccc-ccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccccccccCC-CcCCCc
Q 039149 403 RCAKLKDS--TFL-VFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWK-PLPFTH 478 (536)
Q Consensus 403 ~c~~l~~l--~~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~-~~~~~~ 478 (536)
+|....+- ..+ .+.|.|+.|.+++|..+++... ..+.....+...|..+.+++||...+-... ...+++
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhh-------hhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 77544332 122 2567777787877776665421 111123445667777777777766543321 223567
Q ss_pred cceEeeccCCCCCCCCC
Q 039149 479 LKEMGVRACDQLEKLPL 495 (536)
Q Consensus 479 L~~L~i~~C~~L~~lp~ 495 (536)
|+.+++.+|....+=|.
T Consensus 428 Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAI 444 (483)
T ss_pred cceeeeechhhhhhhhh
Confidence 77777777766655443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=2.1e-09 Score=93.34 Aligned_cols=123 Identities=26% Similarity=0.321 Sum_probs=57.6
Q ss_pred ceEEEecCCCcccCcccc-ccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccc
Q 039149 129 RNFLVCAGEGLKEAPDVK-RWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCV 207 (536)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 207 (536)
..-+...+..+..+.... .+.+++.|++++|.++.+.....+++|++|++++| .++.+++.+...+++|+.|+++++
T Consensus 21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N- 98 (175)
T PF14580_consen 21 LRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNN- 98 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS-
T ss_pred cccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCC-
Confidence 344566666677666655 46789999999999999999999999999999976 888887664567999999999999
Q ss_pred cccccCc--ccccCCCCCceEeeccCCCcccch----hccCCCCCcEEeccCC
Q 039149 208 NLTLKLP--LGMSKLGSLELLDVSHTGIRELPE----ELKLLVNLKCLTLRWT 254 (536)
Q Consensus 208 ~i~~~lp--~~i~~L~~L~~L~L~~~~i~~lp~----~i~~L~~L~~L~l~~~ 254 (536)
.|. .+- ..+..+++|++|++.+|.+...+. -+..+++|+.||-...
T Consensus 99 ~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 99 KIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp ----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 887 553 346779999999999998876654 3788999999997553
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.76 E-value=3.6e-10 Score=110.91 Aligned_cols=188 Identities=27% Similarity=0.347 Sum_probs=123.3
Q ss_pred ecCCCcccCcc-ccccccceEEEeecCCcccccCC-CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccc
Q 039149 134 CAGEGLKEAPD-VKRWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTL 211 (536)
Q Consensus 134 ~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~ 211 (536)
...+.+.++|. ...+..+..+.+..|.+..+|.. .++..|..|+|+.| .+..+|.. ++.++ |++|-++++ +++
T Consensus 82 lsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~-lC~lp-Lkvli~sNN-kl~- 156 (722)
T KOG0532|consen 82 LSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDG-LCDLP-LKVLIVSNN-KLT- 156 (722)
T ss_pred ccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChh-hhcCc-ceeEEEecC-ccc-
Confidence 33344445542 22233455556666666665554 66667777777755 66667665 44443 677777777 777
Q ss_pred cCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccc
Q 039149 212 KLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDS 291 (536)
Q Consensus 212 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 291 (536)
.+|+.|+.+.+|..||.+.|.+..+|..++.|.+|+.|.++.| ++..+|++ +..| .|..|+++.|++.
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNkis--------- 224 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKIS--------- 224 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCcee---------
Confidence 7888888777788888888888888888888888888888776 77777776 5544 4777777777665
Q ss_pred cccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccC
Q 039149 292 VLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAG 345 (536)
Q Consensus 292 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 345 (536)
..+-.+..+++|++|-+..+...+-++-........-.+.|++.-|+
T Consensus 225 -------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -------YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -------ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 35667777888888888887776665443333322233456665553
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.5e-10 Score=100.28 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=16.5
Q ss_pred ccCCccEEEeecCCCCcC--CcccccCCCccEEEEecCch
Q 039149 392 VFRSLHHVTIWRCAKLKD--STFLVFAPNLKSLVLRNCHA 429 (536)
Q Consensus 392 ~~~~L~~L~l~~c~~l~~--l~~l~~l~~L~~L~l~~c~~ 429 (536)
.+|+|..|+|++|..++. ...+-+++.|++|+++.|..
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 344444444444443333 11223444555555555443
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.9e-09 Score=101.58 Aligned_cols=207 Identities=20% Similarity=0.153 Sum_probs=91.8
Q ss_pred CCCcccEEEeeccccccccCcc--cccCCCCCceEeeccCCC---cccchhccCCCCCcEEeccCCCCCCcc-chHHhhc
Q 039149 194 LMPSLKVLKMSNCVNLTLKLPL--GMSKLGSLELLDVSHTGI---RELPEELKLLVNLKCLTLRWTFELNKI-PRQLISN 267 (536)
Q Consensus 194 ~l~~Lr~L~L~~~~~i~~~lp~--~i~~L~~L~~L~L~~~~i---~~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~~i~~ 267 (536)
++++||...|.++ .+. ..+. -...|++++.|||++|-+ ..+-.-...|++|+.|+++.| ++... ....-..
T Consensus 119 n~kkL~~IsLdn~-~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLL 195 (505)
T ss_pred hHHhhhheeecCc-ccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhh
Confidence 4444555555554 444 3331 233355555555555422 222222344555555555554 22211 1111123
Q ss_pred CccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCc
Q 039149 268 SSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDA 347 (536)
Q Consensus 268 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 347 (536)
++.|+.|.+++|+..+. ....-+..+++|+.|.+..+........ .......|+.|+|++...+
T Consensus 196 l~~lK~L~l~~CGls~k--------------~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWK--------------DVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLI 259 (505)
T ss_pred hhhhheEEeccCCCCHH--------------HHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCccc
Confidence 44555555665555431 2223334445555555554431111110 1111225666666654443
Q ss_pred ceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCCc---ccccCCCccEEEE
Q 039149 348 TSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDST---FLVFAPNLKSLVL 424 (536)
Q Consensus 348 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l 424 (536)
..... ...+.++.|+.|+++.| ++.++..-..+ +.-. ...+++|+.|.+..+ ++.+++ .+-.+++|+.|.+
T Consensus 260 ~~~~~-~~~~~l~~L~~Lnls~t-gi~si~~~d~~-s~~k--t~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 260 DFDQG-YKVGTLPGLNQLNLSST-GIASIAEPDVE-SLDK--THTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccccc-cccccccchhhhhcccc-CcchhcCCCcc-chhh--hcccccceeeecccC-ccccccccchhhccchhhhhhc
Confidence 32222 25667777777777766 33333210000 0000 016778888888777 343333 3344556666654
Q ss_pred e
Q 039149 425 R 425 (536)
Q Consensus 425 ~ 425 (536)
.
T Consensus 334 ~ 334 (505)
T KOG3207|consen 334 T 334 (505)
T ss_pred c
Confidence 3
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=1.8e-09 Score=97.91 Aligned_cols=133 Identities=23% Similarity=0.232 Sum_probs=84.3
Q ss_pred CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCc
Q 039149 168 PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLK 247 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~ 247 (536)
.....|.+|++++| .++.+.++ .+-.+.+|+|+++++ +|. .+-. +..|.+|+.|||++|.+.++-.--.+|-|.+
T Consensus 281 dTWq~LtelDLS~N-~I~~iDES-vKL~Pkir~L~lS~N-~i~-~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGN-LITQIDES-VKLAPKLRRLILSQN-RIR-TVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred chHhhhhhcccccc-chhhhhhh-hhhccceeEEecccc-cee-eehh-hhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 34556777777765 66666666 566677777777777 665 4432 5567777777777776655533334556667
Q ss_pred EEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchh
Q 039149 248 CLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA 322 (536)
Q Consensus 248 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 322 (536)
+|.+.+| .+..+.. ++++-+|..|++.++.+.. ......+++++.|+.+.+..+....
T Consensus 356 tL~La~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~--------------ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQN-KIETLSG--LRKLYSLVNLDLSSNQIEE--------------LDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhh-hHhhhhh--hHhhhhheeccccccchhh--------------HHHhcccccccHHHHHhhcCCCccc
Confidence 7777775 5666654 6677777777777766653 1445666666666666666655543
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7.7e-09 Score=98.70 Aligned_cols=161 Identities=19% Similarity=0.159 Sum_probs=113.8
Q ss_pred cccccceEEEeecCCcccccC---CCCCCCcceEecccccchhcch--hHHhcCCCcccEEEeeccccccccCccc--cc
Q 039149 146 KRWENVRRLSLMQNQIETLSE---VPTCPHLLTLFLDFNENLNMIA--DGFFQLMPSLKVLKMSNCVNLTLKLPLG--MS 218 (536)
Q Consensus 146 ~~~~~l~~L~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~l~~~~--~~~~~~l~~Lr~L~L~~~~~i~~~lp~~--i~ 218 (536)
..++++|.+++.++.+...+. ...|+++|.|+|++| -+..+- ..+...+++|+.|+|+.+ .+. ..-++ -.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~-~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLS-NFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-ccc-CCccccchh
Confidence 335788999999988877663 388999999999986 333221 334788999999999998 665 33222 23
Q ss_pred CCCCCceEeeccCCCc--ccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCC
Q 039149 219 KLGSLELLDVSHTGIR--ELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGG 296 (536)
Q Consensus 219 ~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 296 (536)
.+.+|+.|.++.|++. ++-......++|+.|++.+|..+..-... ..-++.|++|+++++.....
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~------------ 261 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF------------ 261 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc------------
Confidence 5889999999999876 33334556789999999998433322221 34577899999999887642
Q ss_pred cccccccccCccCCceEEEEecCchhhH
Q 039149 297 GEVLIQELLGLKYLEVLELTLGSYHALQ 324 (536)
Q Consensus 297 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 324 (536)
......+.++.|+.|.++.++..++.
T Consensus 262 --~~~~~~~~l~~L~~Lnls~tgi~si~ 287 (505)
T KOG3207|consen 262 --DQGYKVGTLPGLNQLNLSSTGIASIA 287 (505)
T ss_pred --ccccccccccchhhhhccccCcchhc
Confidence 34456677788888887776665543
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.62 E-value=2.2e-08 Score=101.24 Aligned_cols=103 Identities=31% Similarity=0.419 Sum_probs=47.7
Q ss_pred CCcceEecccccchhcchhHHhcCCC-cccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEE
Q 039149 171 PHLLTLFLDFNENLNMIADGFFQLMP-SLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCL 249 (536)
Q Consensus 171 ~~Lr~L~l~~~~~l~~~~~~~~~~l~-~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 249 (536)
+.+..|.+..+ .+..++.. ...+. +|+.|+++++ .+. .+|..++.+++|+.|+++.|++.++|...+.+++|+.|
T Consensus 116 ~~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N-~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDN-KIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCc-ccccCccc-cccchhhccccccccc-chh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 44444444432 44444432 23332 4555555554 444 44444445555555555555555554444444555555
Q ss_pred eccCCCCCCccchHHhhcCccCcEEEeccC
Q 039149 250 TLRWTFELNKIPRQLISNSSRLRVLRMLGT 279 (536)
Q Consensus 250 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 279 (536)
+++++ .+..+|.. ++.+..|++|.+.++
T Consensus 192 ~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 192 DLSGN-KISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred eccCC-ccccCchh-hhhhhhhhhhhhcCC
Confidence 55544 44445443 333444444544444
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=7.3e-09 Score=94.05 Aligned_cols=131 Identities=20% Similarity=0.188 Sum_probs=104.2
Q ss_pred hcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccC
Q 039149 192 FQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRL 271 (536)
Q Consensus 192 ~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L 271 (536)
+...+.|..|||+++ .|+ .+.+++.-++.++.|++++|.|..+. ++..|++|++||+++| .+..+.. .-.++-|.
T Consensus 280 ~dTWq~LtelDLS~N-~I~-~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~G-wh~KLGNI 354 (490)
T KOG1259|consen 280 ADTWQELTELDLSGN-LIT-QIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGN-LLAECVG-WHLKLGNI 354 (490)
T ss_pred cchHhhhhhcccccc-chh-hhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccc-hhHhhhh-hHhhhcCE
Confidence 345677899999999 898 88888888999999999999988875 4888999999999997 6666654 35578888
Q ss_pred cEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccC
Q 039149 272 RVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAG 345 (536)
Q Consensus 272 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 345 (536)
++|.+.++.+ ..+..|+.+-.|..|++..+....+.......+++ +|+.+.+.+.+
T Consensus 355 KtL~La~N~i-----------------E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NP 410 (490)
T KOG1259|consen 355 KTLKLAQNKI-----------------ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNP 410 (490)
T ss_pred eeeehhhhhH-----------------hhhhhhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCC
Confidence 9999988765 35667777777888888888888877777666655 88888877654
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.58 E-value=4.8e-08 Score=98.83 Aligned_cols=158 Identities=27% Similarity=0.356 Sum_probs=125.4
Q ss_pred ccccccceEEEeecCCcccccCCCCCC--CcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCC
Q 039149 145 VKRWENVRRLSLMQNQIETLSEVPTCP--HLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGS 222 (536)
Q Consensus 145 ~~~~~~l~~L~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~ 222 (536)
......+..+++.++.+..++...... +|+.|+++++ .+..+|.. ++.+++|+.|+++++ .+. .+|...+.+.+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N-~l~-~l~~~~~~~~~ 187 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFN-DLS-DLPKLLSNLSN 187 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhh-hhccccccccccCCc-hhh-hhhhhhhhhhh
Confidence 344467899999999999999885554 8999999976 78888644 899999999999999 999 99998889999
Q ss_pred CceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccc
Q 039149 223 LELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQ 302 (536)
Q Consensus 223 L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (536)
|+.|+++++++..+|..+..+..|++|.+.++ ....++.. +.++.++..+.+.++.... .+.
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N-~~~~~~~~-~~~~~~l~~l~l~~n~~~~----------------~~~ 249 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNN-SIIELLSS-LSNLKNLSGLELSNNKLED----------------LPE 249 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCC-cceecchh-hhhcccccccccCCceeee----------------ccc
Confidence 99999999999999998888888999999997 34555554 8889999888866665432 245
Q ss_pred cccCccCCceEEEEecCchhhH
Q 039149 303 ELLGLKYLEVLELTLGSYHALQ 324 (536)
Q Consensus 303 ~l~~l~~L~~L~l~~~~~~~~~ 324 (536)
.++.+.+++.|+++.+....+.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred hhccccccceeccccccccccc
Confidence 5556666777766655544443
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.5e-09 Score=96.97 Aligned_cols=136 Identities=17% Similarity=0.128 Sum_probs=97.2
Q ss_pred cceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcC---Cc
Q 039149 335 CIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKD---ST 411 (536)
Q Consensus 335 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---l~ 411 (536)
+|+.|+|+.|.++++-...-.+.+++.|.+|++++|...+........ . --++|+.|+|+||..--. +.
T Consensus 235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~-------h-ise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA-------H-ISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh-------h-hchhhhhhhhhhhHhhhhhhHHH
Confidence 788888888888877655436788999999999999654433211110 0 456899999999974322 22
Q ss_pred cc-ccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccccccccc-ccCCCcCCCccceEeeccCCC
Q 039149 412 FL-VFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKS-IHWKPLPFTHLKEMGVRACDQ 489 (536)
Q Consensus 412 ~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~-~~~~~~~~~~L~~L~i~~C~~ 489 (536)
.+ ..+|+|..|++++|..++.-.. ..+..|+.|++|.++.|..+-- --......|+|.+|++.+|-.
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~-----------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCF-----------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHHHhCCceeeeccccccccCchHH-----------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 32 4789999999999988765322 2456799999999999976642 112456789999999999844
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.48 E-value=1e-07 Score=67.83 Aligned_cols=56 Identities=36% Similarity=0.544 Sum_probs=27.6
Q ss_pred cccEEEeeccccccccCcc-cccCCCCCceEeeccCCCcccch-hccCCCCCcEEeccCC
Q 039149 197 SLKVLKMSNCVNLTLKLPL-GMSKLGSLELLDVSHTGIRELPE-ELKLLVNLKCLTLRWT 254 (536)
Q Consensus 197 ~Lr~L~L~~~~~i~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~ 254 (536)
+|++|++++| .++ .+|. .+..+++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3455555555 555 4442 33445555555555555554443 3455555555555554
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.47 E-value=1.6e-07 Score=66.88 Aligned_cols=59 Identities=34% Similarity=0.474 Sum_probs=54.0
Q ss_pred CCCceEeeccCCCcccch-hccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCc
Q 039149 221 GSLELLDVSHTGIRELPE-ELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTG 280 (536)
Q Consensus 221 ~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 280 (536)
++|++|++++|+++.+|. .+..+++|++|++++| .++.+|++.+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999999995 5789999999999987 8999998889999999999999885
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=5.4e-07 Score=95.75 Aligned_cols=89 Identities=24% Similarity=0.347 Sum_probs=41.8
Q ss_pred cceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCc-ccchhccCCCCCcEEec
Q 039149 173 LLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIR-ELPEELKLLVNLKCLTL 251 (536)
Q Consensus 173 Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l 251 (536)
++.|+|+++.--..+|.. ++.+++|+.|+|+++ .+.|.+|..++.+.+|++|+|++|.+. .+|..+++|++|++|++
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 344444433211233333 445555555555555 444445555555555555555555444 44555555555555555
Q ss_pred cCCCCCCccchH
Q 039149 252 RWTFELNKIPRQ 263 (536)
Q Consensus 252 ~~~~~l~~lp~~ 263 (536)
++|.....+|..
T Consensus 498 s~N~l~g~iP~~ 509 (623)
T PLN03150 498 NGNSLSGRVPAA 509 (623)
T ss_pred cCCcccccCChH
Confidence 554222244443
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.30 E-value=1.6e-06 Score=92.23 Aligned_cols=85 Identities=27% Similarity=0.414 Sum_probs=73.0
Q ss_pred cccEEEeeccccccccCcccccCCCCCceEeeccCCCc-ccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEE
Q 039149 197 SLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIR-ELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLR 275 (536)
Q Consensus 197 ~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~ 275 (536)
.++.|+|+++ .+.|.+|..+++|.+|++|+|++|.+. .+|..++.+++|+.|++++|.-...+|.. ++++++|++|+
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEE
Confidence 3788899998 888789999999999999999999886 88888999999999999998433477876 89999999999
Q ss_pred eccCcccc
Q 039149 276 MLGTGLLN 283 (536)
Q Consensus 276 l~~~~~~~ 283 (536)
+++|....
T Consensus 497 Ls~N~l~g 504 (623)
T PLN03150 497 LNGNSLSG 504 (623)
T ss_pred CcCCcccc
Confidence 99887654
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=2.4e-06 Score=55.68 Aligned_cols=40 Identities=40% Similarity=0.538 Sum_probs=21.4
Q ss_pred CCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccch
Q 039149 222 SLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPR 262 (536)
Q Consensus 222 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 262 (536)
+|++|++++|+|+.+|..+++|++|+.|++++| .++.+|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 455555555555555555555666666666555 4554443
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.13 E-value=8.5e-06 Score=79.76 Aligned_cols=72 Identities=19% Similarity=0.364 Sum_probs=49.9
Q ss_pred hcCCCcccEEEeeccccccccCcccccCCCCCceEeeccC-CCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCcc
Q 039149 192 FQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHT-GIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSR 270 (536)
Q Consensus 192 ~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~ 270 (536)
+..+.+++.|++++| .++ .+|. --.+|+.|.+++| .+..+|..+ ..+|+.|++.+|..+..+|. +
T Consensus 48 ~~~~~~l~~L~Is~c-~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------S 113 (426)
T ss_pred HHHhcCCCEEEeCCC-CCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------c
Confidence 445678888888888 888 7772 2346888888876 677777655 35788888888766666665 3
Q ss_pred CcEEEec
Q 039149 271 LRVLRML 277 (536)
Q Consensus 271 L~~L~l~ 277 (536)
|+.|++.
T Consensus 114 Le~L~L~ 120 (426)
T PRK15386 114 VRSLEIK 120 (426)
T ss_pred cceEEeC
Confidence 5555554
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=2.7e-06 Score=55.41 Aligned_cols=40 Identities=35% Similarity=0.546 Sum_probs=32.8
Q ss_pred CcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccc
Q 039149 196 PSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELP 237 (536)
Q Consensus 196 ~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp 237 (536)
++|++|+++++ .|+ .+|..+++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N-~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QIT-DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47889999999 898 88888999999999999999888765
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=4.2e-07 Score=92.23 Aligned_cols=124 Identities=28% Similarity=0.372 Sum_probs=59.0
Q ss_pred cceEEEeecCCcccc-cCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEee
Q 039149 150 NVRRLSLMQNQIETL-SEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDV 228 (536)
Q Consensus 150 ~l~~L~l~~~~~~~l-~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L 228 (536)
.+..+++..+.+..+ .....+.+|..|++.+| .++.+... +..+.+|++|+++++ .|+ .+. .+..+..|+.|++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~-l~~~~~L~~L~ls~N-~I~-~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENL-LSSLVNLQVLDLSFN-KIT-KLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccc-hhhhhcchheecccc-ccc-ccc-chhhccchhhhee
Confidence 344444444444442 22344555555555543 44444332 344555555555555 555 442 2444555555555
Q ss_pred ccCCCcccchhccCCCCCcEEeccCCCCCCccch-HHhhcCccCcEEEeccCcc
Q 039149 229 SHTGIRELPEELKLLVNLKCLTLRWTFELNKIPR-QLISNSSRLRVLRMLGTGL 281 (536)
Q Consensus 229 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~ 281 (536)
.+|.|..++ .+..+.+|+.+++++| .+..+.. . ...+.+|+.+.+.++.+
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCch
Confidence 555554442 3334555555555554 4444443 1 24455555555554443
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.07 E-value=1.1e-06 Score=81.96 Aligned_cols=90 Identities=21% Similarity=0.156 Sum_probs=43.3
Q ss_pred CCCCCcceEecccccchh---cchhHHhcCCCcccEEEeeccc--cccccCccc-------ccCCCCCceEeeccCCCc-
Q 039149 168 PTCPHLLTLFLDFNENLN---MIADGFFQLMPSLKVLKMSNCV--NLTLKLPLG-------MSKLGSLELLDVSHTGIR- 234 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~---~~~~~~~~~l~~Lr~L~L~~~~--~i~~~lp~~-------i~~L~~L~~L~L~~~~i~- 234 (536)
..+..+..++|+||.--. ..-...+.+.+.||.-++++-- ....++|+. +-..++|++|+|+.|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 344555566666552111 1112224555666666666430 111133332 223446666666666322
Q ss_pred ----ccchhccCCCCCcEEeccCCCCCC
Q 039149 235 ----ELPEELKLLVNLKCLTLRWTFELN 258 (536)
Q Consensus 235 ----~lp~~i~~L~~L~~L~l~~~~~l~ 258 (536)
.+-.-+.....|++|++.+| .+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg 133 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNC-GLG 133 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcC-CCC
Confidence 22223556677777777776 444
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=3.2e-07 Score=93.11 Aligned_cols=125 Identities=28% Similarity=0.353 Sum_probs=83.9
Q ss_pred CcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEec
Q 039149 172 HLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTL 251 (536)
Q Consensus 172 ~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l 251 (536)
.|.+.++++| .+..+..+ +.-++.|+.|+|+++ .+. ..- .+..|.+|++|||++|.+..+|.--..-.+|+.|.+
T Consensus 165 ~L~~a~fsyN-~L~~mD~S-Lqll~ale~LnLshN-k~~-~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDES-LQLLPALESLNLSHN-KFT-KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchh-hHHhHHHH-HHHHHHhhhhccchh-hhh-hhH-HHHhcccccccccccchhccccccchhhhhheeeee
Confidence 4455555533 55555554 677788888888888 776 554 677788888888888888877753111224888888
Q ss_pred cCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEec
Q 039149 252 RWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLG 318 (536)
Q Consensus 252 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 318 (536)
++| .++.+-. |.+|.+|+.|+++.|-+.+. ..+.-|..|..|+.|.+.++
T Consensus 240 rnN-~l~tL~g--ie~LksL~~LDlsyNll~~h--------------seL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 240 RNN-ALTTLRG--IENLKSLYGLDLSYNLLSEH--------------SELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ccc-HHHhhhh--HHhhhhhhccchhHhhhhcc--------------hhhhHHHHHHHHHHHhhcCC
Confidence 887 7777765 88888888888887766532 33444445555555555544
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=1.1e-05 Score=79.03 Aligned_cols=82 Identities=21% Similarity=0.376 Sum_probs=61.3
Q ss_pred cccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEe
Q 039149 148 WENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLD 227 (536)
Q Consensus 148 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~ 227 (536)
+.++++|++.++.++.+|.. .++|++|.+.+|..++.+|..+ ..+|++|++++|..+. .+|++ |++|+
T Consensus 51 ~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~s------Le~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPES------VRSLE 118 (426)
T ss_pred hcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccccc------cceEE
Confidence 46788999999988888842 3479999999888888888653 3589999999986777 78764 55666
Q ss_pred eccC---CCcccchhcc
Q 039149 228 VSHT---GIRELPEELK 241 (536)
Q Consensus 228 L~~~---~i~~lp~~i~ 241 (536)
+.++ .+..+|.++.
T Consensus 119 L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 119 IKGSATDSIKNVPNGLT 135 (426)
T ss_pred eCCCCCcccccCcchHh
Confidence 6654 3567776643
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=5.3e-06 Score=88.11 Aligned_cols=130 Identities=19% Similarity=0.257 Sum_probs=91.6
Q ss_pred ccceEEEeecCCccc--cc--CCCCCCCcceEecccccchhcc-hhHHhcCCCcccEEEeeccccccccCcccccCCCCC
Q 039149 149 ENVRRLSLMQNQIET--LS--EVPTCPHLLTLFLDFNENLNMI-ADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSL 223 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~--l~--~~~~~~~Lr~L~l~~~~~l~~~-~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L 223 (536)
.++++|++.+...-. .+ -...+|.|++|.+.+- .+..- -.....++++|+.||+|++ +++ .+ .+|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~-nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NIS-NL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-Ccc-Cc-HHHhccccH
Confidence 578888887643211 11 1267899999999863 22111 1223678999999999999 999 77 789999999
Q ss_pred ceEeeccCCCcccc--hhccCCCCCcEEeccCCCCCCccchH------HhhcCccCcEEEeccCcccc
Q 039149 224 ELLDVSHTGIRELP--EELKLLVNLKCLTLRWTFELNKIPRQ------LISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 224 ~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~------~i~~l~~L~~L~l~~~~~~~ 283 (536)
+.|.+++-.+..-. ..+.+|++|++||++...... -+.- .-..|++||.|+++++....
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhH
Confidence 99999887665322 467889999999999864333 2210 01348999999999887654
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.00 E-value=1.5e-06 Score=81.21 Aligned_cols=138 Identities=16% Similarity=0.169 Sum_probs=84.1
Q ss_pred ccccccccceEEEeecCCccc-----ccC-CCCCCCcceEecccc---cchhcchhH------HhcCCCcccEEEeeccc
Q 039149 143 PDVKRWENVRRLSLMQNQIET-----LSE-VPTCPHLLTLFLDFN---ENLNMIADG------FFQLMPSLKVLKMSNCV 207 (536)
Q Consensus 143 ~~~~~~~~l~~L~l~~~~~~~-----l~~-~~~~~~Lr~L~l~~~---~~l~~~~~~------~~~~l~~Lr~L~L~~~~ 207 (536)
+.......+..|.+++|.+.. +.. ..+-+.||..+++.- .....+|+. .+..+++|++||||.+
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN- 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN- 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-
Confidence 334445788999999987643 111 145568888888752 112234432 2557789999999999
Q ss_pred cccccCcc----cccCCCCCceEeeccCCCcccc--------------hhccCCCCCcEEeccCCCCCCccch----HHh
Q 039149 208 NLTLKLPL----GMSKLGSLELLDVSHTGIRELP--------------EELKLLVNLKCLTLRWTFELNKIPR----QLI 265 (536)
Q Consensus 208 ~i~~~lp~----~i~~L~~L~~L~L~~~~i~~lp--------------~~i~~L~~L~~L~l~~~~~l~~lp~----~~i 265 (536)
.+....+. -|..+..|+.|.|.+|.+...- ..+++-++|+++....| ++..-+. ..+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAF 181 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHH
Confidence 66523332 2566899999999999765221 12344556777776665 4544332 123
Q ss_pred hcCccCcEEEeccCccc
Q 039149 266 SNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 266 ~~l~~L~~L~l~~~~~~ 282 (536)
...+.|+++.+..+.+.
T Consensus 182 ~~~~~leevr~~qN~I~ 198 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIR 198 (382)
T ss_pred HhccccceEEEeccccc
Confidence 44566666666665554
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=4.3e-06 Score=76.35 Aligned_cols=33 Identities=9% Similarity=-0.069 Sum_probs=20.1
Q ss_pred ccCCccEEEeecCCCCcCCcc-------cccCCCccEEEE
Q 039149 392 VFRSLHHVTIWRCAKLKDSTF-------LVFAPNLKSLVL 424 (536)
Q Consensus 392 ~~~~L~~L~l~~c~~l~~l~~-------l~~l~~L~~L~l 424 (536)
.|+.|.-|.+...+-+..+.. ++.+++++.|.=
T Consensus 247 ~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred CCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 667777777776665544432 456677766643
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=2.3e-06 Score=90.75 Aligned_cols=108 Identities=24% Similarity=0.243 Sum_probs=57.8
Q ss_pred CCcceEecccccchh-cchhHHhcCCCcccEEEeecccccc-ccCcccccCCCCCceEeeccCCCcccchhccCCCCCcE
Q 039149 171 PHLLTLFLDFNENLN-MIADGFFQLMPSLKVLKMSNCVNLT-LKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKC 248 (536)
Q Consensus 171 ~~Lr~L~l~~~~~l~-~~~~~~~~~l~~Lr~L~L~~~~~i~-~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 248 (536)
.+|+.|+++|...+. ..+...-..+|.||.|.+++- .+. +++-.-..++++|+.||+++|+++.+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 566666666643332 233333345566666666665 332 12222234566666667776666666 56666666666
Q ss_pred EeccCCCCCCccc-hHHhhcCccCcEEEeccCcc
Q 039149 249 LTLRWTFELNKIP-RQLISNSSRLRVLRMLGTGL 281 (536)
Q Consensus 249 L~l~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~~ 281 (536)
|.+++- .+..-. -..+.+|++|++|+++....
T Consensus 200 L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 200 LSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccCC-CCCchhhHHHHhcccCCCeeecccccc
Confidence 666653 222211 01155666666666665543
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.86 E-value=2.1e-06 Score=87.16 Aligned_cols=128 Identities=25% Similarity=0.425 Sum_probs=100.7
Q ss_pred ccccccceEEEeecCCcccccC-CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCC
Q 039149 145 VKRWENVRRLSLMQNQIETLSE-VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSL 223 (536)
Q Consensus 145 ~~~~~~l~~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L 223 (536)
...+.++..+++.+|.++.+.. ...+++|++|++++| .++.+.. +..+..|+.|++++| .|. .+. .+..+..|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N-~i~-~~~-~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGN-LIS-DIS-GLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhhheeccC-cch-hcc-CCccchhh
Confidence 3445789999999999999988 788999999999977 7877766 788888999999999 888 665 46669999
Q ss_pred ceEeeccCCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcc
Q 039149 224 ELLDVSHTGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGL 281 (536)
Q Consensus 224 ~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 281 (536)
+.++++++.+..+... ...+.+|+.+++.++ .+..+.. +..+..+..+++..+.+
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~--~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELDLGGN-SIREIEG--LDLLKKLVLLSLLDNKI 220 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHhccCC-chhcccc--hHHHHHHHHhhcccccc
Confidence 9999999988888654 578999999999997 5554443 44445555555555544
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.76 E-value=6.6e-06 Score=85.69 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=18.2
Q ss_pred cceeccccccccccccCCCcC--CCccceEeeccCCCCCC
Q 039149 455 LQRLHVEDLPDLKSIHWKPLP--FTHLKEMGVRACDQLEK 492 (536)
Q Consensus 455 L~~L~l~~~~~L~~~~~~~~~--~~~L~~L~i~~C~~L~~ 492 (536)
++.|.+..|.....-.....+ ..+++.+.+.+|+.+..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 566666665444322221111 44555566666655554
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=1.3e-06 Score=88.92 Aligned_cols=129 Identities=25% Similarity=0.367 Sum_probs=101.5
Q ss_pred ccccccccceEEEeecCCcccccCC-CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCccccc--C
Q 039149 143 PDVKRWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMS--K 219 (536)
Q Consensus 143 ~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~--~ 219 (536)
.+...|..+..+++.+|.+..+... .-++.|+.|+|+.| ++.... ++..+++|++|||+++ .+. .+|. ++ .
T Consensus 158 ~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~--~Lr~l~~LkhLDlsyN-~L~-~vp~-l~~~g 231 (1096)
T KOG1859|consen 158 SNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD--NLRRLPKLKHLDLSYN-CLR-HVPQ-LSMVG 231 (1096)
T ss_pred ccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH--HHHhcccccccccccc-hhc-cccc-cchhh
Confidence 3445578888899998887766555 45688999999987 666665 3899999999999999 888 8875 33 2
Q ss_pred CCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCC---ccchHHhhcCccCcEEEeccCccc
Q 039149 220 LGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELN---KIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 220 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~---~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
+. |+.|.+++|.+++| .+|.+|.+|+.||+++| -+. .+-+ ++.|..|+.|++.||...
T Consensus 232 c~-L~~L~lrnN~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~p--LwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 232 CK-LQLLNLRNNALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEP--LWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hh-heeeeecccHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhH--HHHHHHHHHHhhcCCccc
Confidence 44 99999999999888 58999999999999987 443 3333 778889999999988753
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.59 E-value=0.00011 Score=63.72 Aligned_cols=101 Identities=24% Similarity=0.365 Sum_probs=71.1
Q ss_pred cceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcc--cccCCCCCceEe
Q 039149 150 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPL--GMSKLGSLELLD 227 (536)
Q Consensus 150 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~--~i~~L~~L~~L~ 227 (536)
+...+++.+|++..++..+.+++|.+|.+..| .+..+.+..-..+++|..|.|.++ +|. ++-+ .+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN-si~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN-SIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCC-cceeeccchhhhccccceEEecCc-chh-hhhhcchhccCCccceee
Confidence 55677888888888777788888888888854 777777765556677888888888 776 5432 244577788888
Q ss_pred eccCCCcccch----hccCCCCCcEEeccC
Q 039149 228 VSHTGIRELPE----ELKLLVNLKCLTLRW 253 (536)
Q Consensus 228 L~~~~i~~lp~----~i~~L~~L~~L~l~~ 253 (536)
+-++.+..... -+..+++|++||+.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 87776655443 256677777777654
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.58 E-value=8.1e-06 Score=65.97 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=54.7
Q ss_pred CCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEE
Q 039149 170 CPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCL 249 (536)
Q Consensus 170 ~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 249 (536)
-..|...++++| .++.+|+.|-.+++.+..|+++++ .|. .+|.++..++.|+.|+++.|.+...|+-|..|.+|-.|
T Consensus 52 ~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n-eis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN-EIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccc-hhhhCCHHHhhccchhhhhhcchh-hhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 344555566644 566666665556666666666666 666 66666666666666666666666666666666666666
Q ss_pred eccCCCCCCccch
Q 039149 250 TLRWTFELNKIPR 262 (536)
Q Consensus 250 ~l~~~~~l~~lp~ 262 (536)
+..++ ....+|-
T Consensus 129 ds~~n-a~~eid~ 140 (177)
T KOG4579|consen 129 DSPEN-ARAEIDV 140 (177)
T ss_pred cCCCC-ccccCcH
Confidence 66654 4444443
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.46 E-value=1.6e-05 Score=82.74 Aligned_cols=36 Identities=17% Similarity=0.379 Sum_probs=19.4
Q ss_pred eecccccccc-ccccCCCcCCCccceEeeccCCCCCC
Q 039149 457 RLHVEDLPDL-KSIHWKPLPFTHLKEMGVRACDQLEK 492 (536)
Q Consensus 457 ~L~l~~~~~L-~~~~~~~~~~~~L~~L~i~~C~~L~~ 492 (536)
.+.+.+|+.+ .++.........++.|.+..|...+.
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccc
Confidence 3445556555 33333333334477888877765543
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=2.1e-05 Score=71.93 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=45.8
Q ss_pred hcCCCcccEEEeeccccccccCc---ccccCCCCCceEeeccCCC----cccchhccCCCCCcEEeccCCCCCC--ccch
Q 039149 192 FQLMPSLKVLKMSNCVNLTLKLP---LGMSKLGSLELLDVSHTGI----RELPEELKLLVNLKCLTLRWTFELN--KIPR 262 (536)
Q Consensus 192 ~~~l~~Lr~L~L~~~~~i~~~lp---~~i~~L~~L~~L~L~~~~i----~~lp~~i~~L~~L~~L~l~~~~~l~--~lp~ 262 (536)
-..+.+++.|||.++ .|. .-. .-+.+|++|++|+|+.|.+ ..+| -.+.+|++|-+.|+ .+. ...
T Consensus 67 ~~~~~~v~elDL~~N-~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT-~L~w~~~~- 139 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGN-LIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGT-GLSWTQST- 139 (418)
T ss_pred HHHhhhhhhhhcccc-hhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCC-CCChhhhh-
Confidence 345667777777777 555 221 1133577777777777643 3343 23456777777665 222 222
Q ss_pred HHhhcCccCcEEEeccCc
Q 039149 263 QLISNSSRLRVLRMLGTG 280 (536)
Q Consensus 263 ~~i~~l~~L~~L~l~~~~ 280 (536)
.....++.+++|+++.++
T Consensus 140 s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNS 157 (418)
T ss_pred hhhhcchhhhhhhhccch
Confidence 225556666666666553
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.22 E-value=9.5e-05 Score=59.93 Aligned_cols=87 Identities=22% Similarity=0.322 Sum_probs=77.9
Q ss_pred ccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceE
Q 039149 149 ENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELL 226 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L 226 (536)
..+..+++++|.++.+|.. ..++.+++|++..| .+.++|.. +..|+.||.|+++.+ .+. ..|.-|..|.+|-+|
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N-~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFN-PLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccC-ccc-cchHHHHHHHhHHHh
Confidence 4678889999999988876 67789999999965 89999999 899999999999999 888 899999999999999
Q ss_pred eeccCCCcccchh
Q 039149 227 DVSHTGIRELPEE 239 (536)
Q Consensus 227 ~L~~~~i~~lp~~ 239 (536)
+..++.+.++|..
T Consensus 129 ds~~na~~eid~d 141 (177)
T KOG4579|consen 129 DSPENARAEIDVD 141 (177)
T ss_pred cCCCCccccCcHH
Confidence 9999988888866
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.06 E-value=0.00092 Score=58.14 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=50.5
Q ss_pred CCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCccc
Q 039149 220 LGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEV 299 (536)
Q Consensus 220 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 299 (536)
+.+...+||+++.+..++ .+-.+..|.+|.+..| .++.+.+..-..+++|..|.+.++++.+. .
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l--------------~ 104 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQEL--------------G 104 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhh--------------h
Confidence 445566777777665553 4556677777777765 66666665333455677777777666532 3
Q ss_pred ccccccCccCCceEEEEecC
Q 039149 300 LIQELLGLKYLEVLELTLGS 319 (536)
Q Consensus 300 ~~~~l~~l~~L~~L~l~~~~ 319 (536)
.+..+..++.|+.|.+-.+.
T Consensus 105 dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 105 DLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred hcchhccCCccceeeecCCc
Confidence 45555556666666554443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=9e-05 Score=67.34 Aligned_cols=103 Identities=23% Similarity=0.183 Sum_probs=70.2
Q ss_pred CCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccch--hccCCCCCc
Q 039149 170 CPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPE--ELKLLVNLK 247 (536)
Q Consensus 170 ~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~ 247 (536)
+.+.+.|++.|| .+.++.- ..+|+.|++|.|+-+ .|+ .+. .+..+++|+.|.|+.|.|..+-+ -+.+|++|+
T Consensus 18 l~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvN-kIs-sL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVN-KIS-SLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCC-CccHHHH--HHhcccceeEEeecc-ccc-cch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 445566666665 5555543 678888888888888 777 664 36778888888888887765543 367888888
Q ss_pred EEeccCCCCCCccc----hHHhhcCccCcEEEecc
Q 039149 248 CLTLRWTFELNKIP----RQLISNSSRLRVLRMLG 278 (536)
Q Consensus 248 ~L~l~~~~~l~~lp----~~~i~~l~~L~~L~l~~ 278 (536)
.|-+..|.....-+ ..++.-|++|+.|+-..
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 88887765444333 23466678888775443
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.29 E-value=0.0019 Score=34.90 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=7.0
Q ss_pred CceEeeccCCCcccchh
Q 039149 223 LELLDVSHTGIRELPEE 239 (536)
Q Consensus 223 L~~L~L~~~~i~~lp~~ 239 (536)
|++|++++|.++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.00033 Score=63.79 Aligned_cols=98 Identities=28% Similarity=0.284 Sum_probs=73.2
Q ss_pred ccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcc--cccCCCCCceE
Q 039149 149 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPL--GMSKLGSLELL 226 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~--~i~~L~~L~~L 226 (536)
.+++.|.+.++.+.++.-...|+.|++|.|+-| .++.+.. +..|++|+.|.|..+ .|. .+-+ -+.+|++|++|
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvN-kIssL~p--l~rCtrLkElYLRkN-~I~-sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVN-KISSLAP--LQRCTRLKELYLRKN-CIE-SLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeecc-ccccchh--HHHHHHHHHHHHHhc-ccc-cHHHHHHHhcCchhhhH
Confidence 567888888888888877788999999999866 7777766 788999999999988 776 5532 35678889999
Q ss_pred eeccC-CCcccch-----hccCCCCCcEEec
Q 039149 227 DVSHT-GIRELPE-----ELKLLVNLKCLTL 251 (536)
Q Consensus 227 ~L~~~-~i~~lp~-----~i~~L~~L~~L~l 251 (536)
.|..| ...+-+. -+.-|++|+.||=
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 88876 2222222 2566888888863
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.0011 Score=57.69 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=39.8
Q ss_pred cccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcC--CcccccCCCccEEEEecCchh
Q 039149 355 AFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKD--STFLVFAPNLKSLVLRNCHAM 430 (536)
Q Consensus 355 ~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~l~~l~~L~~L~l~~c~~l 430 (536)
.+.+++.++.|.+.+|..+.....+..+ +..++|+.|+|++|+.+++ +.++..+++|+.|.|.+.+.+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~--------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG--------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc--------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 3455566666666666555444333322 1556677777777776665 556666666666666665544
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.83 E-value=0.0044 Score=56.29 Aligned_cols=90 Identities=27% Similarity=0.240 Sum_probs=48.0
Q ss_pred hcCCCcccEEEeeccccc--cccCcccccCCCCCceEeeccCCCcccc--hhccCCCCCcEEeccCCCCCC--ccchHHh
Q 039149 192 FQLMPSLKVLKMSNCVNL--TLKLPLGMSKLGSLELLDVSHTGIRELP--EELKLLVNLKCLTLRWTFELN--KIPRQLI 265 (536)
Q Consensus 192 ~~~l~~Lr~L~L~~~~~i--~~~lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~--~lp~~~i 265 (536)
+-.+++|+.|+++.+ .. .+.++...-.+++|++|++++|+|+.+- ..+..+.+|..|++..|.... .--..++
T Consensus 61 ~P~Lp~LkkL~lsdn-~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDN-YRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCC-cccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 444556666666555 21 1233333444566666666666554321 134566677777777773221 2223335
Q ss_pred hcCccCcEEEeccCccc
Q 039149 266 SNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 266 ~~l~~L~~L~l~~~~~~ 282 (536)
.-+++|.+|+-..+...
T Consensus 140 ~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVDGE 156 (260)
T ss_pred HHhhhhccccccccCCc
Confidence 55777777776655443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.78 E-value=0.0044 Score=33.44 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=16.5
Q ss_pred cccEEEeeccccccccCcccccCC
Q 039149 197 SLKVLKMSNCVNLTLKLPLGMSKL 220 (536)
Q Consensus 197 ~Lr~L~L~~~~~i~~~lp~~i~~L 220 (536)
+|++||+++| .++ .+|+++++|
T Consensus 1 ~L~~Ldls~n-~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EES-EEGTTTTT-
T ss_pred CccEEECCCC-cCE-eCChhhcCC
Confidence 4788888888 888 888776653
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.63 E-value=0.038 Score=45.68 Aligned_cols=94 Identities=23% Similarity=0.351 Sum_probs=29.7
Q ss_pred CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcc-cccCCCCCceEeeccCCCcccchh-ccCCCC
Q 039149 168 PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPL-GMSKLGSLELLDVSHTGIRELPEE-LKLLVN 245 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~ 245 (536)
..+++|+.+.+.. .+..++...|..++.|+.+.+... +. .++. .+..+.+|+.+.+..+ +..++.. +.+. +
T Consensus 32 ~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~--~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 32 SNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPNN--LK-SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETST--T--EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred ccccccccccccc--cccccceeeeeccccccccccccc--cc-ccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 3444455555442 244444444555545555555321 22 2222 2333455555555332 3333322 3333 4
Q ss_pred CcEEeccCCCCCCccchHHhhcCcc
Q 039149 246 LKCLTLRWTFELNKIPRQLISNSSR 270 (536)
Q Consensus 246 L~~L~l~~~~~l~~lp~~~i~~l~~ 270 (536)
|+.+.+.. .+..++...+.++++
T Consensus 105 l~~i~~~~--~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 105 LKEINIPS--NITKIEENAFKNCTK 127 (129)
T ss_dssp --EEE-TT--B-SS----GGG----
T ss_pred ceEEEECC--CccEECCcccccccc
Confidence 44444433 234444443444433
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.58 E-value=0.0066 Score=55.19 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=19.3
Q ss_pred CCCCCcEEeccCC--CCCCccchHHhhcCccCcEEEeccCccc
Q 039149 242 LLVNLKCLTLRWT--FELNKIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 242 ~L~~L~~L~l~~~--~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
.|++|+.|.++.| .....++.- +.++++|++|++++|++.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc
Confidence 4555555555554 222233332 334466666666655543
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.36 E-value=0.032 Score=51.09 Aligned_cols=111 Identities=20% Similarity=0.164 Sum_probs=56.0
Q ss_pred CCCcceEecccccchhcch---hHHhcCCCcccEEEeecc--ccccccCcc-------cccCCCCCceEeeccCCCc-cc
Q 039149 170 CPHLLTLFLDFNENLNMIA---DGFFQLMPSLKVLKMSNC--VNLTLKLPL-------GMSKLGSLELLDVSHTGIR-EL 236 (536)
Q Consensus 170 ~~~Lr~L~l~~~~~l~~~~---~~~~~~l~~Lr~L~L~~~--~~i~~~lp~-------~i~~L~~L~~L~L~~~~i~-~l 236 (536)
+..+..++|+||.--+.-. ...+.+-++|++.+++.- ....+++|+ .+-++++|+..+|+.|-+. +.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4455556666652211111 112444566666666543 011112232 2445677777777776432 22
Q ss_pred c----hhccCCCCCcEEeccCCCCCCccchHHhh-------------cCccCcEEEeccCcc
Q 039149 237 P----EELKLLVNLKCLTLRWTFELNKIPRQLIS-------------NSSRLRVLRMLGTGL 281 (536)
Q Consensus 237 p----~~i~~L~~L~~L~l~~~~~l~~lp~~~i~-------------~l~~L~~L~l~~~~~ 281 (536)
| .-|++-+.|.||.+++| .+..+..+-|+ +-+.|++..+..+..
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 2 23566677888888776 55544433233 345566666665544
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.0072 Score=52.75 Aligned_cols=37 Identities=19% Similarity=0.038 Sum_probs=22.7
Q ss_pred ccceeEeecccCCcceecccccccccccccceeccccc
Q 039149 334 SCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGF 371 (536)
Q Consensus 334 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 371 (536)
++|+.|+|++|..+++-.+. .+..+++|+.|.+.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCch
Confidence 36666666666666665554 55566666666665543
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.64 E-value=0.024 Score=28.31 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=4.7
Q ss_pred CceEeeccCCCccc
Q 039149 223 LELLDVSHTGIREL 236 (536)
Q Consensus 223 L~~L~L~~~~i~~l 236 (536)
|++|++++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.19 E-value=0.031 Score=27.90 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=9.7
Q ss_pred CccceEeeccCCCCCCCC
Q 039149 477 THLKEMGVRACDQLEKLP 494 (536)
Q Consensus 477 ~~L~~L~i~~C~~L~~lp 494 (536)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467788888875 77766
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.09 E-value=0.25 Score=40.66 Aligned_cols=102 Identities=21% Similarity=0.324 Sum_probs=56.8
Q ss_pred CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcc-cccCCCCCceEeeccCCCcccchh-ccCCCC
Q 039149 168 PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPL-GMSKLGSLELLDVSHTGIRELPEE-LKLLVN 245 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~ 245 (536)
..+++|+.+.+.. .+..++...|..+.+|+.+++... +. .++. .+.++.+|+++.+.. .+..++.. +..+.+
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred hCCCCCCEEEECC--CeeEeChhhccccccccccccccc--cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 4667788887762 566777777888888888888663 55 4543 455677788888865 55555543 556788
Q ss_pred CcEEeccCCCCCCccchHHhhcCccCcEEEecc
Q 039149 246 LKCLTLRWTFELNKIPRQLISNSSRLRVLRMLG 278 (536)
Q Consensus 246 L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 278 (536)
|+.+++.. .+..++...+.+. +|+.+.+..
T Consensus 83 l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 88888865 3667777667776 777777664
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.40 E-value=0.22 Score=45.87 Aligned_cols=161 Identities=16% Similarity=0.212 Sum_probs=95.5
Q ss_pred cccceEEEeecCCccc-----ccCC-CCCCCcceEeccccc---chhcchhH------HhcCCCcccEEEeecccccccc
Q 039149 148 WENVRRLSLMQNQIET-----LSEV-PTCPHLLTLFLDFNE---NLNMIADG------FFQLMPSLKVLKMSNCVNLTLK 212 (536)
Q Consensus 148 ~~~l~~L~l~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~---~l~~~~~~------~~~~l~~Lr~L~L~~~~~i~~~ 212 (536)
+..+..+++++|.+.. +... .+-.+|++..++.-. .-..++.. .+-+|++|+..+||.+ .+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCcc
Confidence 4567778888876643 2111 456677777776421 11122221 2567889999999988 66545
Q ss_pred Cccc----ccCCCCCceEeeccCCCccc-----ch---------hccCCCCCcEEeccCCCCCCccchHH----hhcCcc
Q 039149 213 LPLG----MSKLGSLELLDVSHTGIREL-----PE---------ELKLLVNLKCLTLRWTFELNKIPRQL----ISNSSR 270 (536)
Q Consensus 213 lp~~----i~~L~~L~~L~L~~~~i~~l-----p~---------~i~~L~~L~~L~l~~~~~l~~lp~~~----i~~l~~ 270 (536)
.|+. |++-..|.+|.+++|.+.-+ .. ....-+.|++.....| ++...|... +..=.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhcC
Confidence 5544 55677888888988865422 11 2345678999988887 677666531 112247
Q ss_pred CcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCc
Q 039149 271 LRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 320 (536)
Q Consensus 271 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 320 (536)
|+++.+..+.+...-. ..-....+..+++|+.|++..+..
T Consensus 187 lk~vki~qNgIrpegv----------~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 187 LKEVKIQQNGIRPEGV----------TMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred ceeEEeeecCcCcchh----------HHHHHHHHHHhCcceeeeccccch
Confidence 7888888776653100 011233455667777777765443
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.06 E-value=0.18 Score=28.27 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=7.8
Q ss_pred CCceEeeccCCCcccch
Q 039149 222 SLELLDVSHTGIRELPE 238 (536)
Q Consensus 222 ~L~~L~L~~~~i~~lp~ 238 (536)
+|++|+|++|.++.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44444444444444443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.06 E-value=0.18 Score=28.27 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=7.8
Q ss_pred CCceEeeccCCCcccch
Q 039149 222 SLELLDVSHTGIRELPE 238 (536)
Q Consensus 222 ~L~~L~L~~~~i~~lp~ 238 (536)
+|++|+|++|.++.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44444444444444443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.00 E-value=0.0086 Score=53.39 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=65.5
Q ss_pred CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCc
Q 039149 168 PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLK 247 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~ 247 (536)
..+...++|+++.+ .+..+... |+.+..|..||++.+ .+. .+|...+++..++.+++..|+...+|.+.+.+++++
T Consensus 39 ~~~kr~tvld~~s~-r~vn~~~n-~s~~t~~~rl~~skn-q~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSN-RLVNLGKN-FSILTRLVRLDLSKN-QIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hccceeeeehhhhh-HHHhhccc-hHHHHHHHHHhccHh-hHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 45566777777755 44444444 566777888888888 888 888888888888888888888888898888888888
Q ss_pred EEeccCCC
Q 039149 248 CLTLRWTF 255 (536)
Q Consensus 248 ~L~l~~~~ 255 (536)
.++..++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 88888874
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.43 E-value=0.37 Score=26.96 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=18.3
Q ss_pred CCCCcEEeccCCCCCCccchHHh
Q 039149 243 LVNLKCLTLRWTFELNKIPRQLI 265 (536)
Q Consensus 243 L~~L~~L~l~~~~~l~~lp~~~i 265 (536)
|++|+.|++.+| .++.+|.+++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 578999999998 8999998744
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.43 E-value=0.37 Score=26.96 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=18.3
Q ss_pred CCCCcEEeccCCCCCCccchHHh
Q 039149 243 LVNLKCLTLRWTFELNKIPRQLI 265 (536)
Q Consensus 243 L~~L~~L~l~~~~~l~~lp~~~i 265 (536)
|++|+.|++.+| .++.+|.+++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 578999999998 8999998744
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.22 E-value=0.017 Score=51.54 Aligned_cols=95 Identities=20% Similarity=0.176 Sum_probs=80.1
Q ss_pred hhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchH
Q 039149 184 LNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQ 263 (536)
Q Consensus 184 l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 263 (536)
+..+|---+..++...+||++.+ .+. .+-..++.++.|..|+++.+.+..+|...+.+..+++++++.| .....|.+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~-r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s 106 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSN-RLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS 106 (326)
T ss_pred hcccchhhhhccceeeeehhhhh-HHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc
Confidence 33444323667788999999999 777 7777788899999999999999999999999999999999987 88999987
Q ss_pred HhhcCccCcEEEeccCccc
Q 039149 264 LISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 264 ~i~~l~~L~~L~l~~~~~~ 282 (536)
.++++.+++++.-++...
T Consensus 107 -~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 -QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred -ccccCCcchhhhccCcch
Confidence 899999999988877654
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.77 E-value=0.64 Score=26.03 Aligned_cols=17 Identities=18% Similarity=0.612 Sum_probs=11.8
Q ss_pred CCccceEeeccCCCCCC
Q 039149 476 FTHLKEMGVRACDQLEK 492 (536)
Q Consensus 476 ~~~L~~L~i~~C~~L~~ 492 (536)
+|+|+.|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36677777777777654
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.99 E-value=2.4 Score=23.78 Aligned_cols=17 Identities=47% Similarity=0.688 Sum_probs=9.9
Q ss_pred CCceEeeccCCCcccch
Q 039149 222 SLELLDVSHTGIRELPE 238 (536)
Q Consensus 222 ~L~~L~L~~~~i~~lp~ 238 (536)
+|++|++++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45566666666665554
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.16 E-value=4.1 Score=22.88 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=7.3
Q ss_pred CCCceEeeccCCCc
Q 039149 221 GSLELLDVSHTGIR 234 (536)
Q Consensus 221 ~~L~~L~L~~~~i~ 234 (536)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555543
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=64.41 E-value=3.6 Score=22.30 Aligned_cols=13 Identities=46% Similarity=0.590 Sum_probs=4.9
Q ss_pred CCCceEeeccCCC
Q 039149 221 GSLELLDVSHTGI 233 (536)
Q Consensus 221 ~~L~~L~L~~~~i 233 (536)
++|++|+|++|+|
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3444444444443
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=41.66 E-value=20 Score=20.36 Aligned_cols=12 Identities=42% Similarity=0.553 Sum_probs=6.2
Q ss_pred CCceEeeccCCC
Q 039149 222 SLELLDVSHTGI 233 (536)
Q Consensus 222 ~L~~L~L~~~~i 233 (536)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555544
Done!