Query 039149
Match_columns 536
No_of_seqs 356 out of 3214
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 11:08:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 1.8E-25 6E-30 221.0 23.9 282 146-488 41-322 (347)
2 4fmz_A Internalin; leucine ric 99.9 1.8E-25 6.2E-30 220.9 21.8 299 129-488 46-344 (347)
3 2id5_A Lingo-1, leucine rich r 99.9 1.6E-24 5.5E-29 223.7 21.0 310 130-487 14-330 (477)
4 3v47_A TOLL-like receptor 5B a 99.9 3.8E-24 1.3E-28 219.5 22.4 350 129-508 12-401 (455)
5 3vq2_A TLR4, TOLL-like recepto 99.9 2.6E-24 8.8E-29 229.1 20.0 336 130-489 14-411 (606)
6 2id5_A Lingo-1, leucine rich r 99.9 9.7E-24 3.3E-28 217.8 23.3 308 152-508 14-326 (477)
7 1o6v_A Internalin A; bacterial 99.9 1.8E-23 6.2E-28 214.9 25.3 139 131-280 50-188 (466)
8 3o6n_A APL1; leucine-rich repe 99.9 3.4E-24 1.2E-28 215.3 19.1 289 145-495 41-335 (390)
9 4ecn_A Leucine-rich repeat pro 99.9 1.1E-24 3.9E-29 236.4 15.6 321 145-509 444-834 (876)
10 4eco_A Uncharacterized protein 99.9 1.8E-24 6.1E-29 230.6 14.5 323 145-511 202-596 (636)
11 3o6n_A APL1; leucine-rich repe 99.9 1.2E-23 4.2E-28 211.2 19.7 271 168-497 42-314 (390)
12 2z63_A TOLL-like receptor 4, v 99.9 3E-23 1E-27 219.2 23.3 149 129-283 9-163 (570)
13 2z7x_B TOLL-like receptor 1, v 99.9 2.5E-23 8.5E-28 217.2 22.3 143 129-281 2-150 (520)
14 3t6q_A CD180 antigen; protein- 99.9 2.1E-23 7.2E-28 222.0 21.9 149 129-283 14-167 (606)
15 1o6v_A Internalin A; bacterial 99.9 7.1E-23 2.4E-27 210.5 24.8 318 129-495 70-392 (466)
16 2z81_A CD282 antigen, TOLL-lik 99.9 1.6E-23 5.3E-28 220.3 19.2 148 132-283 10-162 (549)
17 3oja_B Anopheles plasmodium-re 99.9 1.5E-23 5.1E-28 222.2 18.1 302 146-487 48-355 (597)
18 2z63_A TOLL-like receptor 4, v 99.9 3.8E-23 1.3E-27 218.4 20.5 360 130-509 31-525 (570)
19 2ft3_A Biglycan; proteoglycan, 99.9 3.1E-23 1E-27 203.5 18.2 296 149-488 33-331 (332)
20 3vq2_A TLR4, TOLL-like recepto 99.9 7.1E-23 2.4E-27 217.9 21.5 149 130-282 35-194 (606)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-22 4.1E-27 213.9 22.4 143 129-281 33-181 (562)
22 3t6q_A CD180 antigen; protein- 99.9 2E-22 6.7E-27 214.5 23.1 151 130-284 36-194 (606)
23 3rgz_A Protein brassinosteroid 99.9 6E-23 2.1E-27 223.8 19.2 131 145-282 196-331 (768)
24 3v47_A TOLL-like receptor 5B a 99.9 8.4E-23 2.9E-27 209.5 18.8 319 152-509 13-378 (455)
25 1xku_A Decorin; proteoglycan, 99.9 3.1E-22 1E-26 196.2 22.0 294 149-487 31-329 (330)
26 3oja_B Anopheles plasmodium-re 99.9 8.1E-23 2.8E-27 216.5 19.1 279 168-495 48-341 (597)
27 3bz5_A Internalin-J, INLJ; leu 99.9 8E-23 2.7E-27 208.7 17.8 121 146-280 39-159 (457)
28 4ecn_A Leucine-rich repeat pro 99.9 1.2E-22 4.1E-27 220.6 19.8 330 129-494 450-843 (876)
29 3j0a_A TOLL-like receptor 5; m 99.9 8.3E-22 2.8E-26 217.1 26.0 151 129-283 6-162 (844)
30 4fcg_A Uncharacterized protein 99.9 1.8E-22 6.2E-27 197.2 18.3 240 194-520 79-319 (328)
31 4eco_A Uncharacterized protein 99.9 1.9E-22 6.5E-27 214.9 18.7 330 129-494 208-603 (636)
32 3rgz_A Protein brassinosteroid 99.9 6.7E-23 2.3E-27 223.5 14.9 334 130-496 203-557 (768)
33 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-22 1.1E-26 204.1 18.6 294 130-486 45-348 (457)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-21 4.2E-26 206.2 23.4 127 149-283 31-160 (562)
35 1ziw_A TOLL-like receptor 3; i 99.9 6.2E-22 2.1E-26 213.6 21.5 150 129-283 6-159 (680)
36 2z7x_B TOLL-like receptor 1, v 99.9 6.2E-22 2.1E-26 206.6 20.8 125 152-283 3-129 (520)
37 4fcg_A Uncharacterized protein 99.9 8.7E-22 3E-26 192.3 16.2 220 170-461 80-309 (328)
38 2z81_A CD282 antigen, TOLL-lik 99.9 2.5E-21 8.4E-26 203.5 19.6 171 305-508 331-503 (549)
39 1ziw_A TOLL-like receptor 3; i 99.9 7.2E-21 2.4E-25 205.3 23.0 175 152-345 7-182 (680)
40 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-20 4.5E-25 201.5 21.4 148 130-283 34-187 (635)
41 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-21 8.2E-26 188.1 14.2 128 150-281 51-186 (313)
42 3j0a_A TOLL-like receptor 5; m 99.9 1.6E-20 5.5E-25 206.8 22.4 196 152-370 7-214 (844)
43 1ogq_A PGIP-2, polygalacturona 99.9 6.9E-21 2.4E-25 184.8 16.7 130 171-320 50-186 (313)
44 2z80_A TOLL-like receptor 2, v 99.8 1.8E-20 6.3E-25 185.3 17.6 265 153-488 35-312 (353)
45 2z80_A TOLL-like receptor 2, v 99.8 1.3E-20 4.4E-25 186.4 15.5 194 131-345 35-233 (353)
46 2ft3_A Biglycan; proteoglycan, 99.8 3.7E-20 1.3E-24 181.4 16.9 262 172-489 34-306 (332)
47 1xku_A Decorin; proteoglycan, 99.8 8.8E-20 3E-24 178.6 18.5 245 171-470 31-279 (330)
48 2z66_A Variable lymphocyte rec 99.8 3.1E-20 1.1E-24 179.9 14.9 125 153-282 11-139 (306)
49 3zyj_A Leucine-rich repeat-con 99.8 2.1E-19 7.1E-24 183.2 20.4 238 131-428 47-290 (440)
50 3zyi_A Leucine-rich repeat-con 99.8 1.3E-19 4.5E-24 185.3 18.0 237 132-428 59-301 (452)
51 3g06_A SSPH2 (leucine-rich rep 99.8 2.3E-19 7.7E-24 188.7 19.7 253 130-464 43-295 (622)
52 4g8a_A TOLL-like receptor 4; l 99.8 3.5E-19 1.2E-23 190.4 21.4 136 130-269 55-197 (635)
53 1jl5_A Outer protein YOPM; leu 99.8 6.8E-19 2.3E-23 179.4 22.2 211 130-370 74-287 (454)
54 3o53_A Protein LRIM1, AGAP0063 99.8 1.5E-20 5.3E-25 182.8 8.1 266 168-491 31-300 (317)
55 3zyi_A Leucine-rich repeat-con 99.8 3.3E-19 1.1E-23 182.4 17.8 218 129-405 77-301 (452)
56 3zyj_A Leucine-rich repeat-con 99.8 3.6E-19 1.2E-23 181.5 17.3 243 150-464 44-290 (440)
57 1jl5_A Outer protein YOPM; leu 99.8 4.9E-19 1.7E-23 180.5 17.9 262 150-491 132-409 (454)
58 2z66_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 169.2 17.2 240 130-428 10-259 (306)
59 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-18 5.3E-23 182.3 19.7 256 149-488 40-295 (622)
60 1ozn_A Reticulon 4 receptor; N 99.8 1.7E-18 5.8E-23 165.8 16.6 219 152-429 14-237 (285)
61 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-18 4.9E-23 168.9 13.4 266 173-495 12-280 (317)
62 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-18 4.1E-23 166.8 12.5 218 130-405 14-236 (285)
63 1wwl_A Monocyte differentiatio 99.8 1.2E-19 4E-24 176.2 5.3 245 149-427 43-306 (312)
64 1h6u_A Internalin H; cell adhe 99.8 4.4E-18 1.5E-22 164.5 14.3 102 170-281 40-141 (308)
65 3oja_A Leucine-rich immune mol 99.7 3.4E-18 1.2E-22 176.0 11.1 216 169-430 32-250 (487)
66 1h6u_A Internalin H; cell adhe 99.7 3.4E-17 1.2E-21 158.3 15.9 151 144-321 36-186 (308)
67 1wwl_A Monocyte differentiatio 99.7 2.2E-18 7.6E-23 167.1 7.4 245 168-487 40-306 (312)
68 3oja_A Leucine-rich immune mol 99.7 3E-17 1E-21 169.0 14.9 236 194-485 32-270 (487)
69 2xwt_C Thyrotropin receptor; s 99.7 3.3E-17 1.1E-21 152.4 13.6 102 172-279 32-140 (239)
70 2z62_A TOLL-like receptor 4, v 99.7 5.4E-17 1.8E-21 154.5 14.8 219 131-405 11-235 (276)
71 1z7x_W Ribonuclease inhibitor; 99.7 1.9E-18 6.4E-23 177.4 4.9 268 192-488 109-409 (461)
72 2xwt_C Thyrotropin receptor; s 99.7 8E-17 2.7E-21 149.8 15.2 139 139-282 23-169 (239)
73 1p9a_G Platelet glycoprotein I 99.7 4.2E-17 1.4E-21 156.1 13.5 200 146-405 7-206 (290)
74 2z62_A TOLL-like receptor 4, v 99.7 8.7E-17 3E-21 153.1 15.4 216 154-428 12-235 (276)
75 2o6q_A Variable lymphocyte rec 99.7 7.3E-17 2.5E-21 153.0 14.6 128 150-282 17-146 (270)
76 2ast_B S-phase kinase-associat 99.7 1.4E-17 4.8E-22 163.4 7.8 85 192-280 64-153 (336)
77 3ogk_B Coronatine-insensitive 99.7 2.4E-17 8.4E-22 174.7 9.6 308 147-493 162-528 (592)
78 4ay9_X Follicle-stimulating ho 99.7 1.8E-16 6E-21 156.3 14.8 237 155-426 15-255 (350)
79 2o6q_A Variable lymphocyte rec 99.7 2.6E-16 8.8E-21 149.2 15.3 170 129-318 18-191 (270)
80 4ay9_X Follicle-stimulating ho 99.7 3.7E-16 1.3E-20 154.0 16.8 104 174-283 12-118 (350)
81 1z7x_W Ribonuclease inhibitor; 99.7 3.5E-18 1.2E-22 175.4 2.0 307 148-491 27-383 (461)
82 3ogk_B Coronatine-insensitive 99.7 5.3E-17 1.8E-21 172.1 10.0 306 150-488 139-499 (592)
83 3rfs_A Internalin B, repeat mo 99.7 1.8E-16 6.3E-21 150.4 12.7 156 143-319 35-192 (272)
84 2ast_B S-phase kinase-associat 99.7 3.1E-17 1.1E-21 160.9 5.2 105 171-279 70-178 (336)
85 3rfs_A Internalin B, repeat mo 99.6 1.2E-15 4.2E-20 144.7 14.5 170 130-318 44-215 (272)
86 1p9a_G Platelet glycoprotein I 99.6 1.5E-15 5E-20 145.4 14.0 170 130-321 13-185 (290)
87 4ezg_A Putative uncharacterize 99.6 2.6E-15 8.8E-20 135.1 14.0 152 146-320 41-193 (197)
88 3m19_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 139.5 14.8 171 130-320 17-191 (251)
89 1h6t_A Internalin B; cell adhe 99.6 3.1E-15 1.1E-19 143.2 14.2 153 143-322 40-192 (291)
90 2ca6_A RAN GTPase-activating p 99.6 2.3E-16 7.9E-21 157.8 6.1 85 168-254 29-132 (386)
91 4glp_A Monocyte differentiatio 99.6 1.3E-15 4.6E-20 147.4 11.2 116 194-324 89-213 (310)
92 2p1m_B Transport inhibitor res 99.6 1.1E-16 3.7E-21 169.8 3.1 302 147-489 154-518 (594)
93 2p1m_B Transport inhibitor res 99.6 1.5E-16 5.1E-21 168.7 3.8 302 147-489 128-493 (594)
94 3m19_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 138.7 12.9 151 149-319 14-166 (251)
95 2ca6_A RAN GTPase-activating p 99.6 9.1E-16 3.1E-20 153.5 8.2 243 183-464 20-314 (386)
96 1m9s_A Internalin B; cell inva 99.6 6.3E-16 2.2E-20 162.3 6.8 121 151-281 23-143 (605)
97 1h6t_A Internalin B; cell adhe 99.6 3E-14 1E-18 136.4 16.7 165 130-321 49-213 (291)
98 2a5y_B CED-4; apoptosis; HET: 99.6 2.2E-16 7.5E-21 164.8 1.4 112 5-125 344-472 (549)
99 1m9s_A Internalin B; cell inva 99.6 8.5E-15 2.9E-19 153.7 12.7 174 141-345 35-208 (605)
100 3goz_A Leucine-rich repeat-con 99.6 5.9E-15 2E-19 146.1 10.9 239 169-464 20-295 (362)
101 3e6j_A Variable lymphocyte rec 99.6 1.8E-14 6.2E-19 132.7 13.4 145 132-281 24-171 (229)
102 4ezg_A Putative uncharacterize 99.5 2.9E-14 1E-18 128.1 12.6 146 130-282 47-194 (197)
103 1xeu_A Internalin C; cellular 99.5 4.1E-14 1.4E-18 133.2 14.1 156 138-321 30-185 (263)
104 4glp_A Monocyte differentiatio 99.5 2.3E-14 7.8E-19 138.7 11.3 132 149-283 91-238 (310)
105 2v9t_B SLIT homolog 2 protein 99.5 4E-14 1.4E-18 129.5 12.0 149 152-319 14-163 (220)
106 2v9t_B SLIT homolog 2 protein 99.5 5.9E-14 2E-18 128.4 12.8 148 130-282 14-165 (220)
107 2o6s_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 124.4 13.4 145 132-281 12-160 (208)
108 2v70_A SLIT-2, SLIT homolog 2 99.5 1.1E-13 3.7E-18 126.6 12.2 147 153-319 15-164 (220)
109 3e6j_A Variable lymphocyte rec 99.5 1.2E-13 4.3E-18 127.1 12.5 148 151-319 21-170 (229)
110 2v70_A SLIT-2, SLIT homolog 2 99.5 9.4E-14 3.2E-18 127.0 11.4 148 130-282 14-166 (220)
111 3goz_A Leucine-rich repeat-con 99.5 6.5E-15 2.2E-19 145.8 3.8 253 176-488 3-295 (362)
112 1xeu_A Internalin C; cellular 99.5 2.2E-14 7.4E-19 135.1 7.1 145 148-320 18-162 (263)
113 2o6s_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 122.2 12.8 147 152-318 10-158 (208)
114 2xot_A Amphoterin-induced prot 99.5 1.6E-13 5.3E-18 135.7 11.2 149 130-283 21-177 (361)
115 2ell_A Acidic leucine-rich nuc 99.4 1.9E-13 6.5E-18 119.4 9.2 130 149-283 24-161 (168)
116 1a9n_A U2A', U2A'; complex (nu 99.4 1.6E-13 5.5E-18 120.8 8.0 130 147-282 17-153 (176)
117 3cvr_A Invasion plasmid antige 99.4 9.4E-13 3.2E-17 136.7 14.3 114 150-282 60-173 (571)
118 3cvr_A Invasion plasmid antige 99.4 6.8E-13 2.3E-17 137.8 12.9 187 172-434 60-247 (571)
119 2je0_A Acidic leucine-rich nuc 99.4 2.2E-13 7.6E-18 116.3 7.6 124 149-277 17-148 (149)
120 2ell_A Acidic leucine-rich nuc 99.4 4.3E-13 1.5E-17 117.1 8.9 135 168-320 21-159 (168)
121 2xot_A Amphoterin-induced prot 99.4 9.3E-13 3.2E-17 130.1 10.5 155 152-323 21-178 (361)
122 2je0_A Acidic leucine-rich nuc 99.4 4.8E-13 1.6E-17 114.3 6.8 109 169-283 15-127 (149)
123 2o6r_A Variable lymphocyte rec 99.4 4.4E-12 1.5E-16 111.7 11.6 127 151-282 9-137 (177)
124 2wfh_A SLIT homolog 2 protein 99.3 4.4E-12 1.5E-16 113.2 11.6 125 152-282 13-139 (193)
125 1a9n_A U2A', U2A'; complex (nu 99.3 6.9E-13 2.4E-17 116.7 5.8 139 165-322 13-154 (176)
126 1w8a_A SLIT protein; signaling 99.3 2.8E-12 9.7E-17 114.5 9.8 127 152-282 11-139 (192)
127 1dce_A Protein (RAB geranylger 99.3 8.7E-12 3E-16 130.0 10.6 135 168-324 406-549 (567)
128 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4E-16 110.4 9.7 125 174-320 13-138 (193)
129 1w8a_A SLIT protein; signaling 99.3 6.7E-12 2.3E-16 112.0 8.0 125 174-320 11-138 (192)
130 4b8c_D Glucose-repressible alc 99.3 4E-12 1.4E-16 136.8 7.4 110 168-283 221-330 (727)
131 1dce_A Protein (RAB geranylger 99.3 8.9E-12 3E-16 130.0 9.8 105 171-283 441-547 (567)
132 4b8c_D Glucose-repressible alc 99.3 8.3E-12 2.8E-16 134.3 9.4 152 149-321 173-329 (727)
133 1ds9_A Outer arm dynein; leuci 99.2 6.5E-13 2.2E-17 119.4 -1.8 84 192-281 44-127 (198)
134 2o6r_A Variable lymphocyte rec 99.1 2.3E-10 7.8E-15 100.6 11.1 124 131-259 11-138 (177)
135 2r9u_A Variable lymphocyte rec 99.1 1.1E-10 3.7E-15 102.2 8.9 102 174-282 15-118 (174)
136 2r9u_A Variable lymphocyte rec 99.1 1.7E-10 6E-15 100.9 9.1 107 152-263 15-123 (174)
137 1vt4_I APAF-1 related killer D 99.1 5.1E-11 1.8E-15 127.6 6.5 83 25-118 353-437 (1221)
138 3g39_A Variable lymphocyte rec 99.1 1.6E-10 5.5E-15 100.7 8.5 103 173-282 11-115 (170)
139 1ds9_A Outer arm dynein; leuci 99.1 8.6E-12 2.9E-16 112.0 0.4 127 150-283 24-154 (198)
140 3sfz_A APAF-1, apoptotic pepti 99.1 1.8E-10 6.1E-15 132.6 10.6 109 4-124 336-452 (1249)
141 3g39_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 98.7 8.6 106 151-261 11-118 (170)
142 3sb4_A Hypothetical leucine ri 99.0 1E-09 3.5E-14 106.7 12.2 36 243-280 100-135 (329)
143 3sb4_A Hypothetical leucine ri 98.9 6.5E-09 2.2E-13 101.1 11.3 57 170-230 100-157 (329)
144 4fdw_A Leucine rich hypothetic 98.8 1.6E-07 5.5E-12 93.4 19.5 97 171-277 113-211 (401)
145 1z6t_A APAF-1, apoptotic prote 98.8 6.7E-09 2.3E-13 109.6 9.9 106 4-121 336-449 (591)
146 2ifg_A High affinity nerve gro 98.8 1.5E-08 5.1E-13 99.3 9.3 93 183-281 20-115 (347)
147 4fdw_A Leucine rich hypothetic 98.8 1.9E-07 6.5E-12 92.9 17.2 234 149-427 113-355 (401)
148 2ifg_A High affinity nerve gro 98.7 2.8E-08 9.6E-13 97.3 9.9 105 153-259 12-117 (347)
149 3un9_A NLR family member X1; l 98.6 1.2E-08 4.1E-13 100.5 1.5 157 149-320 72-251 (372)
150 3un9_A NLR family member X1; l 98.5 4.7E-08 1.6E-12 96.3 3.2 84 196-282 101-196 (372)
151 3e4g_A ATP synthase subunit S, 98.4 1.6E-07 5.6E-12 80.6 3.1 90 335-432 62-154 (176)
152 4fs7_A Uncharacterized protein 98.3 7.8E-06 2.7E-10 81.3 13.9 77 392-485 295-374 (394)
153 4fs7_A Uncharacterized protein 98.2 1.6E-05 5.3E-10 79.1 14.2 268 168-495 68-359 (394)
154 3e4g_A ATP synthase subunit S, 98.2 2.2E-06 7.5E-11 73.6 6.1 37 245-281 115-151 (176)
155 4gt6_A Cell surface protein; l 98.1 0.0001 3.5E-09 73.1 18.3 101 172-278 65-169 (394)
156 2ra8_A Uncharacterized protein 98.1 8.8E-06 3E-10 79.4 9.0 62 307-370 251-317 (362)
157 2ra8_A Uncharacterized protein 97.9 2E-05 6.9E-10 76.9 8.5 136 168-321 169-320 (362)
158 1io0_A Tropomodulin; LRR prote 97.9 1.2E-05 4.1E-10 70.6 5.7 111 168-282 33-164 (185)
159 3rw6_A Nuclear RNA export fact 97.8 2.6E-05 8.8E-10 72.2 5.8 84 192-277 166-259 (267)
160 4h09_A Hypothetical leucine ri 97.7 0.0031 1.1E-07 61.9 20.6 120 149-278 46-167 (379)
161 1io0_A Tropomodulin; LRR prote 97.6 3.7E-05 1.3E-09 67.4 3.9 119 190-321 30-164 (185)
162 4gt6_A Cell surface protein; l 97.6 0.0013 4.5E-08 65.1 15.4 122 150-279 65-192 (394)
163 3rw6_A Nuclear RNA export fact 97.4 8.8E-05 3E-09 68.6 4.6 81 168-252 167-259 (267)
164 4h09_A Hypothetical leucine ri 97.1 0.033 1.1E-06 54.5 19.0 104 165-278 40-144 (379)
165 3rfe_A Platelet glycoprotein I 95.1 0.03 1E-06 45.4 5.6 54 225-281 12-67 (130)
166 3rfe_A Platelet glycoprotein I 92.6 0.14 4.7E-06 41.4 4.8 33 197-231 32-65 (130)
167 1pgv_A TMD-1, tropomodulin TMD 92.5 0.21 7.2E-06 43.4 6.1 83 170-254 40-136 (197)
168 1pgv_A TMD-1, tropomodulin TMD 89.5 0.42 1.4E-05 41.5 5.1 86 192-279 37-136 (197)
169 2lz0_A Uncharacterized protein 29.4 31 0.0011 25.8 2.5 43 185-230 9-52 (100)
170 2lz0_A Uncharacterized protein 28.4 45 0.0015 24.9 3.2 38 240-279 16-53 (100)
171 3lqv_P Splicing factor 3B subu 20.0 24 0.00081 21.0 0.1 9 51-59 30-38 (39)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.8e-25 Score=220.99 Aligned_cols=282 Identities=17% Similarity=0.203 Sum_probs=145.2
Q ss_pred cccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCce
Q 039149 146 KRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLEL 225 (536)
Q Consensus 146 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~ 225 (536)
..++++++|++.++.+..++....+++|++|++++| .++.++. +..+++|++|+++++ .++ .+| .++.+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n-~i~-~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTN-KIT-DIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCC-CCG-GGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCC-ccc-Cch-HHcCCCcCCE
Confidence 344556666666666666655555666666666655 4555554 566666666666666 565 544 3666666666
Q ss_pred EeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCccccccccc
Q 039149 226 LDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELL 305 (536)
Q Consensus 226 L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (536)
|++++|.+..+|. +..+++|++|++++|..+..++. +..+++|++|++.+|.... ...+.
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~-----------------~~~~~ 174 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD-----------------VTPIA 174 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC-----------------CGGGG
T ss_pred EECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC-----------------chhhc
Confidence 6666666666554 56666666666666644444444 5666666666666655432 11244
Q ss_pred CccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccc
Q 039149 306 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVR 385 (536)
Q Consensus 306 ~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 385 (536)
.+++|+.|+++.+....+..+.. .++|+.|.++++.-. ... .+..+++|++|++++| .+..++. .
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~----l~~L~~L~l~~n~l~-~~~---~~~~~~~L~~L~l~~n-~l~~~~~--~---- 239 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISPLAS----LTSLHYFTAYVNQIT-DIT---PVANMTRLNSLKIGNN-KITDLSP--L---- 239 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGGGGG----CTTCCEEECCSSCCC-CCG---GGGGCTTCCEEECCSS-CCCCCGG--G----
T ss_pred cCCCCCEEEccCCcccccccccC----CCccceeecccCCCC-CCc---hhhcCCcCCEEEccCC-ccCCCcc--h----
Confidence 55555555555544443333111 125555555543221 111 2445555555555555 2222221 0
Q ss_pred cccCCcccCCccEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccc
Q 039149 386 KRREPFVFRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPD 465 (536)
Q Consensus 386 ~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 465 (536)
..+++|+.|++++| .++.++.+..+++|+.|++++| .+..++ ....+++|+.|++++|.-
T Consensus 240 -----~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-------------~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 240 -----ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDIS-------------VLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp -----TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG-------------GGGGCTTCSEEECCSSCC
T ss_pred -----hcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCCh-------------hhcCCCCCCEEECcCCcC
Confidence 14555555555555 4455555555555555555554 222221 233455555555555532
Q ss_pred cccccCCCcCCCccceEeeccCC
Q 039149 466 LKSIHWKPLPFTHLKEMGVRACD 488 (536)
Q Consensus 466 L~~~~~~~~~~~~L~~L~i~~C~ 488 (536)
-...+.....+++|+.|++++|+
T Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 300 GNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CGGGHHHHHTCTTCSEEECCSSS
T ss_pred CCcChhHhhccccCCEEEccCCc
Confidence 22222223345555555555553
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.8e-25 Score=220.89 Aligned_cols=299 Identities=18% Similarity=0.219 Sum_probs=243.9
Q ss_pred ceEEEecCCCcccCccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecccc
Q 039149 129 RNFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVN 208 (536)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~ 208 (536)
-..+...+..+..++.+..+.+++.|++.++.+..++....+++|++|++++| .++.++. +..+++|++|+++++ .
T Consensus 46 L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n-~ 121 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNED-N 121 (347)
T ss_dssp CSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTS-C
T ss_pred ccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCC-c
Confidence 35667777778888888889999999999999999888899999999999987 7777764 899999999999999 8
Q ss_pred ccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccccccccc
Q 039149 209 LTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQAS 288 (536)
Q Consensus 209 i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 288 (536)
+. .+|. +..+++|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|++++|....
T Consensus 122 i~-~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~----- 191 (347)
T 4fmz_A 122 IS-DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED----- 191 (347)
T ss_dssp CC-CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC-----
T ss_pred cc-Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc-----
Confidence 98 8876 89999999999999944444456999999999999998 7888887 8999999999999997753
Q ss_pred ccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecc
Q 039149 289 EDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYIN 368 (536)
Q Consensus 289 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~ 368 (536)
+..+..+++|+.+.++.+.......+. ..++|+.|+++++.- ...+ .+..+++|++|+++
T Consensus 192 ------------~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~L~~L~l~~n~l-~~~~---~~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 192 ------------ISPLASLTSLHYFTAYVNQITDITPVA----NMTRLNSLKIGNNKI-TDLS---PLANLSQLTWLEIG 251 (347)
T ss_dssp ------------CGGGGGCTTCCEEECCSSCCCCCGGGG----GCTTCCEEECCSSCC-CCCG---GGTTCTTCCEEECC
T ss_pred ------------cccccCCCccceeecccCCCCCCchhh----cCCcCCEEEccCCcc-CCCc---chhcCCCCCEEECC
Confidence 233788899999999887766655422 233899999998753 3332 47889999999999
Q ss_pred cccccceeecccccccccccCCcccCCccEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCCccccccC
Q 039149 369 KGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRH 448 (536)
Q Consensus 369 ~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 448 (536)
+| .+..++ .. ..+++|+.|++++| .++.++.+..+++|+.|++++|......+. .
T Consensus 252 ~n-~l~~~~--~~---------~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~ 306 (347)
T 4fmz_A 252 TN-QISDIN--AV---------KDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDME------------V 306 (347)
T ss_dssp SS-CCCCCG--GG---------TTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHH------------H
T ss_pred CC-ccCCCh--hH---------hcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChh------------H
Confidence 98 444442 11 27899999999999 788888899999999999999865444332 4
Q ss_pred CCCCCccceeccccccccccccCCCcCCCccceEeeccCC
Q 039149 449 MSPFENLQRLHVEDLPDLKSIHWKPLPFTHLKEMGVRACD 488 (536)
Q Consensus 449 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~L~~L~i~~C~ 488 (536)
+..+++|+.|++++++ +..++. ...+++|+.|++++|+
T Consensus 307 l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp HHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred hhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 5678999999999985 666554 5678999999999974
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=223.68 Aligned_cols=310 Identities=21% Similarity=0.200 Sum_probs=202.4
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCV 207 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 207 (536)
..+.+.+..+..+|.... .+++.|++.+|.+..++. ...+++|++|++++| .++.+++..|.++++|++|+|+++
T Consensus 14 ~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n- 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN- 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-
Confidence 345666666777775433 678888888888887754 377888888888876 666665545788888888888888
Q ss_pred cccccCccc-ccCCCCCceEeeccCCCccc-chhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccc
Q 039149 208 NLTLKLPLG-MSKLGSLELLDVSHTGIREL-PEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFH 285 (536)
Q Consensus 208 ~i~~~lp~~-i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 285 (536)
.++ .+|.. ++++.+|++|++++|.+..+ |..+..+++|++|++++| .+..++...+.++++|++|++.+|....
T Consensus 91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 166 (477)
T 2id5_A 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTS-- 166 (477)
T ss_dssp CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSS--
T ss_pred cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcc--
Confidence 788 77654 67788888888888877765 456788888888888887 6666655457888888888888886653
Q ss_pred cccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccce
Q 039149 286 QASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNEL 365 (536)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L 365 (536)
.....+..+++|+.|++..+....+.. ......++|+.|+++++.....++. ......+|++|
T Consensus 167 -------------~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L 229 (477)
T 2id5_A 167 -------------IPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTP--NCLYGLNLTSL 229 (477)
T ss_dssp -------------CCHHHHTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECT--TTTTTCCCSEE
T ss_pred -------------cChhHhcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCc--ccccCccccEE
Confidence 233456677788888887665544321 1111223677777777666555543 33334467777
Q ss_pred ecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCCc--ccccCCCccEEEEecCchhhhhhccCCcCCcc
Q 039149 366 YINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDST--FLVFAPNLKSLVLRNCHAMEEIISVGKFSEVP 443 (536)
Q Consensus 366 ~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 443 (536)
+++++ .++.++..... .+++|+.|+|+++ .++.++ .+..+++|+.|+++++.. ..++.
T Consensus 230 ~l~~n-~l~~~~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~-------- 289 (477)
T 2id5_A 230 SITHC-NLTAVPYLAVR---------HLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQL-AVVEP-------- 289 (477)
T ss_dssp EEESS-CCCSCCHHHHT---------TCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCC-SEECT--------
T ss_pred ECcCC-cccccCHHHhc---------CccccCeeECCCC-cCCccChhhccccccCCEEECCCCcc-ceECH--------
Confidence 77766 44444432221 5677777777776 455433 255677777777777533 22211
Q ss_pred ccccCCCCCCccceeccccccccccccCC-CcCCCccceEeeccC
Q 039149 444 EMMRHMSPFENLQRLHVEDLPDLKSIHWK-PLPFTHLKEMGVRAC 487 (536)
Q Consensus 444 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~-~~~~~~L~~L~i~~C 487 (536)
..+..+++|+.|+|+++ .++.++.. ...+++|+.|++.++
T Consensus 290 ---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 290 ---YAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp ---TTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred ---HHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 24456677777777766 55555542 244667777777654
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=3.8e-24 Score=219.53 Aligned_cols=350 Identities=19% Similarity=0.197 Sum_probs=221.6
Q ss_pred ceEEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecc
Q 039149 129 RNFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNC 206 (536)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 206 (536)
...+.+.+.++..+|.. ..++++|++.+|.+..++. ...+++|++|++++|.....++...+.++++|++|+++++
T Consensus 12 ~~~~~c~~~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 12 GYNAICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTEEECCSSCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCcCCCCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 44567777788888873 2789999999999988743 3889999999999884444676666999999999999999
Q ss_pred ccccccCcccccCCCCCceEeeccCCCcc-cchh--ccCCCCCcEEeccCCCCCCcc-chHHhhcCccCcEEEeccCccc
Q 039149 207 VNLTLKLPLGMSKLGSLELLDVSHTGIRE-LPEE--LKLLVNLKCLTLRWTFELNKI-PRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 207 ~~i~~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~i~~l~~L~~L~l~~~~~~ 282 (536)
.+.+..|..++++.+|++|++++|.+.. .|.. ++.+++|++|++++| .++.+ |...++++++|++|++++|...
T Consensus 90 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 90 -QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp -TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred -ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCccc
Confidence 8883458889999999999999999885 4555 899999999999998 66666 5544789999999999999876
Q ss_pred cccccccccc---------ccCCcc----------cccccccCccCCceEEEEecCchhh-H-HHhcCccccccceeEee
Q 039149 283 NFHQASEDSV---------LFGGGE----------VLIQELLGLKYLEVLELTLGSYHAL-Q-ILLSSNKLKSCIRSLFL 341 (536)
Q Consensus 283 ~~~~~~~~~~---------~~~~~~----------~~~~~l~~l~~L~~L~l~~~~~~~~-~-~l~~~~~~~~~L~~L~l 341 (536)
......+... +..... .....+..+++|+.|+++.+..... + .+.... ...+++.|.+
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~~~L~~L~l 246 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI-AGTKIQSLIL 246 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT-TTCCEEEEEC
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc-cccceeeEee
Confidence 5322111000 000000 0001122345677777766554321 1 111111 1125666666
Q ss_pred cccCCcceeccc--------cccc--ccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCCc
Q 039149 342 QLAGDATSIVDA--------TAFA--DLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDST 411 (536)
Q Consensus 342 ~~~~~~~~~~~~--------~~l~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 411 (536)
+++......... ..+. ..++|++|+++++ .+........ +.+++|+.|++++| .+..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~---------~~l~~L~~L~Ls~n-~l~~~~ 315 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KIFALLKSVF---------SHFTDLEQLTLAQN-EINKID 315 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-CCCEECTTTT---------TTCTTCCEEECTTS-CCCEEC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCc-cccccchhhc---------ccCCCCCEEECCCC-cccccC
Confidence 654322110000 0111 1246777777766 3333322221 16677777777777 455432
Q ss_pred --ccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccccccc-cCCCcCCCccceEeeccCC
Q 039149 412 --FLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSI-HWKPLPFTHLKEMGVRACD 488 (536)
Q Consensus 412 --~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~-~~~~~~~~~L~~L~i~~C~ 488 (536)
.+..+++|+.|++++|.. ..++. ..+..+++|+.|+++++ .+..+ +.....+++|+.|+++++
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l-~~~~~-----------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N- 381 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFL-GSIDS-----------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN- 381 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCC-CEECG-----------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred hhHhcCcccCCEEECCCCcc-CCcCh-----------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-
Confidence 466777777777777633 33321 24456777777777776 34444 444556777777777774
Q ss_pred CCCCCCCCCccccCCceEEE
Q 039149 489 QLEKLPLDSSSAKERKFVIR 508 (536)
Q Consensus 489 ~L~~lp~~~~~~~~~l~~i~ 508 (536)
+++.+|...-.....|+.+.
T Consensus 382 ~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 382 QLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp CCSCCCTTTTTTCTTCCEEE
T ss_pred ccccCCHhHhccCCcccEEE
Confidence 67777664422224555554
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=2.6e-24 Score=229.07 Aligned_cols=336 Identities=18% Similarity=0.152 Sum_probs=211.3
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCV 207 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 207 (536)
..+.+.+.++..+|.... .++++|++.+|.+..++. ...+++|++|++++| .++.+++..|.++++|++|+++++
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n- 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGN- 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCC-
Confidence 456777778888886444 789999999999998876 379999999999987 777886666899999999999999
Q ss_pred cccccC-cccccCCCCCceEeeccCCCcccc-hhccCCCCCcEEeccCCCCCC--ccchHHhhcCccCcEEEeccCcccc
Q 039149 208 NLTLKL-PLGMSKLGSLELLDVSHTGIRELP-EELKLLVNLKCLTLRWTFELN--KIPRQLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 208 ~i~~~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~~i~~l~~L~~L~l~~~~~~~ 283 (536)
.++ .+ |..++++.+|++|++++|.+..+| ..++++++|++|++++| .+. .+|.. ++++++|++|++++|....
T Consensus 91 ~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 91 PIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred ccc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCccee
Confidence 898 55 888999999999999999998887 67999999999999998 666 47876 9999999999999998765
Q ss_pred ccccccc-----------ccccCCc-ccccccccCccCCceEEEEecCch--hhHHHhcCcc-cc---------------
Q 039149 284 FHQASED-----------SVLFGGG-EVLIQELLGLKYLEVLELTLGSYH--ALQILLSSNK-LK--------------- 333 (536)
Q Consensus 284 ~~~~~~~-----------~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~~~~~-~~--------------- 333 (536)
..++.+. ..+..+. ...........+|+.|+++.+... ..+....... +.
T Consensus 168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 3222110 1111110 111111122235666666655432 1111111110 00
Q ss_pred -------------ccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEE
Q 039149 334 -------------SCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVT 400 (536)
Q Consensus 334 -------------~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~ 400 (536)
-.++.+.+.....+..... .+..+++|+.|+++++ .+..++ .. ..+++|++|+
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~-~~~~l~-~l----------~~~~~L~~L~ 313 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV--KFHCLANVSAMSLAGV-SIKYLE-DV----------PKHFKWQSLS 313 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG--SCGGGTTCSEEEEESC-CCCCCC-CC----------CTTCCCSEEE
T ss_pred cccChHHhhhhhhccHhheecccccccccccc--ccccCCCCCEEEecCc-cchhhh-hc----------cccccCCEEE
Confidence 0122222222222221111 3556667777777666 233333 11 1566777777
Q ss_pred eecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCC----------ccc---cccCCCCCCccceeccccccccc
Q 039149 401 IWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSE----------VPE---MMRHMSPFENLQRLHVEDLPDLK 467 (536)
Q Consensus 401 l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~----------~~~---~~~~~~~~~~L~~L~l~~~~~L~ 467 (536)
+++| .+..+|.+ .+++|+.|++++|..+..+.. ..... +.. .+.....+++|+.|++.++ .+.
T Consensus 314 l~~n-~l~~lp~~-~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~ 389 (606)
T 3vq2_A 314 IIRC-QLKQFPTL-DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAI 389 (606)
T ss_dssp EESC-CCSSCCCC-CCSSCCEEEEESCSSCEECCC-CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEE
T ss_pred cccc-cCcccccC-CCCccceeeccCCcCccchhh-ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccc
Confidence 7777 44666655 667777777776644332211 00000 000 0122345566677777665 355
Q ss_pred cccCCCcCCCccceEeeccCCC
Q 039149 468 SIHWKPLPFTHLKEMGVRACDQ 489 (536)
Q Consensus 468 ~~~~~~~~~~~L~~L~i~~C~~ 489 (536)
.++.....+++|+.|++++|.-
T Consensus 390 ~~~~~~~~l~~L~~L~l~~n~l 411 (606)
T 3vq2_A 390 IMSANFMGLEELQHLDFQHSTL 411 (606)
T ss_dssp EECCCCTTCTTCCEEECTTSEE
T ss_pred cchhhccCCCCCCeeECCCCcc
Confidence 5555556677788888777643
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=9.7e-24 Score=217.84 Aligned_cols=308 Identities=18% Similarity=0.165 Sum_probs=240.8
Q ss_pred eEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccC
Q 039149 152 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHT 231 (536)
Q Consensus 152 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~ 231 (536)
+.+...++.+..+|.. -.+++++|++++| .++.++...|.++++|++|+|+++ .+.+..|..++++.+|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC
Confidence 5677777888888764 2478999999987 788887666999999999999999 888344788999999999999999
Q ss_pred CCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCC
Q 039149 232 GIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYL 310 (536)
Q Consensus 232 ~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 310 (536)
.+..+|.. ++++++|++|++++| .+..++...+.++++|++|++.++.... .....+..+++|
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L 154 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVY---------------ISHRAFSGLNSL 154 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCE---------------ECTTSSTTCTTC
T ss_pred cCCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccce---------------eChhhccCCCCC
Confidence 99999875 689999999999998 7777765559999999999999988764 345567888999
Q ss_pred ceEEEEecCchhhHH-HhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccC
Q 039149 311 EVLELTLGSYHALQI-LLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRRE 389 (536)
Q Consensus 311 ~~L~l~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 389 (536)
+.|+++.+....+.. .... .++|+.|++.++.-. .+... .+..+++|++|+++++..+..++....
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~---l~~L~~L~l~~n~i~-~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~-------- 221 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSH---LHGLIVLRLRHLNIN-AIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCL-------- 221 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTT---CTTCCEEEEESCCCC-EECTT-CSCSCTTCCEEEEECCTTCCEECTTTT--------
T ss_pred CEEECCCCcCcccChhHhcc---cCCCcEEeCCCCcCc-EeChh-hcccCcccceeeCCCCccccccCcccc--------
Confidence 999999887665542 1111 238999999986543 33322 688899999999999988777764432
Q ss_pred CcccCCccEEEeecCCCCcCCc--ccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccccc
Q 039149 390 PFVFRSLHHVTIWRCAKLKDST--FLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLK 467 (536)
Q Consensus 390 ~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 467 (536)
...+|+.|++++| .++.++ .+..+++|+.|+++++. +..++. ..+..+++|+.|+|.++ .+.
T Consensus 222 --~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~L~~n-~l~ 285 (477)
T 2id5_A 222 --YGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-----------SMLHELLRLQEIQLVGG-QLA 285 (477)
T ss_dssp --TTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-----------TSCTTCTTCCEEECCSS-CCS
T ss_pred --cCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh-----------hhccccccCCEEECCCC-ccc
Confidence 4559999999999 788876 47899999999999975 444432 24677899999999997 555
Q ss_pred cc-cCCCcCCCccceEeeccCCCCCCCCCCCccccCCceEEE
Q 039149 468 SI-HWKPLPFTHLKEMGVRACDQLEKLPLDSSSAKERKFVIR 508 (536)
Q Consensus 468 ~~-~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~ 508 (536)
.+ +.....+++|+.|+++++ +++.+|...-.....|+.+.
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 286 VVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp EECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEE
T ss_pred eECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEE
Confidence 55 445667899999999997 78888765422224555543
No 7
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.8e-23 Score=214.92 Aligned_cols=139 Identities=19% Similarity=0.319 Sum_probs=85.0
Q ss_pred EEEecCCCcccCccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecccccc
Q 039149 131 FLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLT 210 (536)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~ 210 (536)
.+...+..+..++.+..+.+++.|++.++.+..++....+++|++|++++| .+..++. +.++++|++|++++| .++
T Consensus 50 ~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n-~l~ 125 (466)
T 1o6v_A 50 TLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNN-QIT 125 (466)
T ss_dssp EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCC
T ss_pred EEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCC-CCC
Confidence 344445555566666666777777777777777666677777777777765 5555555 677777777777777 677
Q ss_pred ccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCc
Q 039149 211 LKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTG 280 (536)
Q Consensus 211 ~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 280 (536)
.+|. ++++++|++|++++|.+..+| .++.+++|++|++.+ .+..++. ++++++|++|++++|.
T Consensus 126 -~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 126 -DIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNK 188 (466)
T ss_dssp -CCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSC
T ss_pred -CChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCc
Confidence 6654 677777777777777666654 244444444444432 2233332 4444444444444443
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=3.4e-24 Score=215.26 Aligned_cols=289 Identities=15% Similarity=0.171 Sum_probs=216.3
Q ss_pred ccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccC-cccccCCC
Q 039149 145 VKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLG 221 (536)
Q Consensus 145 ~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~ 221 (536)
...+.+++.+++.++.+..+|.. ..+++|++|++++| .+..++...+..+++|++|+++++ .+. .+ |..+++++
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~ 117 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIR-YLPPHVFQNVP 117 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCC-CCCTTTTTTCT
T ss_pred ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCC-CCC-cCCHHHhcCCC
Confidence 34467899999999999998874 67899999999987 677887766899999999999999 898 65 45689999
Q ss_pred CCceEeeccCCCcccchhc-cCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccc
Q 039149 222 SLELLDVSHTGIRELPEEL-KLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVL 300 (536)
Q Consensus 222 ~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 300 (536)
+|++|++++|.+..+|..+ +++++|++|++++| .++.++...++++++|++|++++|.... .
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~- 180 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH---------------V- 180 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSB---------------C-
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCc---------------c-
Confidence 9999999999999999874 89999999999998 7788876668999999999999988754 1
Q ss_pred cccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeeccc
Q 039149 301 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDY 380 (536)
Q Consensus 301 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 380 (536)
.+..+++|+.|.++.+....+. ...+++.|+++++.- ...+ ....++|++|+++++ .+...+ .
T Consensus 181 --~~~~l~~L~~L~l~~n~l~~~~-------~~~~L~~L~l~~n~l-~~~~----~~~~~~L~~L~l~~n-~l~~~~--~ 243 (390)
T 3o6n_A 181 --DLSLIPSLFHANVSYNLLSTLA-------IPIAVEELDASHNSI-NVVR----GPVNVELTILKLQHN-NLTDTA--W 243 (390)
T ss_dssp --CGGGCTTCSEEECCSSCCSEEE-------CCSSCSEEECCSSCC-CEEE----CCCCSSCCEEECCSS-CCCCCG--G
T ss_pred --ccccccccceeecccccccccC-------CCCcceEEECCCCee-eecc----ccccccccEEECCCC-CCcccH--H
Confidence 3556677888887766544331 223777888877542 3332 123467888888877 333321 1
Q ss_pred ccccccccCCcccCCccEEEeecCCCCcCC--cccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCcccee
Q 039149 381 TEIVRKRREPFVFRSLHHVTIWRCAKLKDS--TFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRL 458 (536)
Q Consensus 381 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 458 (536)
. +.+++|+.|+++++ .++.+ ..+..+++|+.|+++++ .++.++. ....+++|+.|
T Consensus 244 l---------~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------~~~~l~~L~~L 300 (390)
T 3o6n_A 244 L---------LNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALNL------------YGQPIPTLKVL 300 (390)
T ss_dssp G---------GGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCEEEC------------SSSCCTTCCEE
T ss_pred H---------cCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCcccCc------------ccCCCCCCCEE
Confidence 1 16788888888887 55543 34677888888888886 3344432 44567888888
Q ss_pred ccccccccccccCCCcCCCccceEeeccCCCCCCCCC
Q 039149 459 HVEDLPDLKSIHWKPLPFTHLKEMGVRACDQLEKLPL 495 (536)
Q Consensus 459 ~l~~~~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~ 495 (536)
+++++ .+..++.....+++|+.|++++| +++.+|.
T Consensus 301 ~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~ 335 (390)
T 3o6n_A 301 DLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKL 335 (390)
T ss_dssp ECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCC
T ss_pred ECCCC-cceecCccccccCcCCEEECCCC-ccceeCc
Confidence 88887 56666665566788888888886 4676764
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.1e-24 Score=236.39 Aligned_cols=321 Identities=11% Similarity=0.131 Sum_probs=214.2
Q ss_pred ccccccceEEEeecCCccc------------------ccCC-C--CCCCcceEecccccchhcchhHHhcCCCcccEEEe
Q 039149 145 VKRWENVRRLSLMQNQIET------------------LSEV-P--TCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKM 203 (536)
Q Consensus 145 ~~~~~~l~~L~l~~~~~~~------------------l~~~-~--~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L 203 (536)
+..+.+++.|++.+|.+.. +|.. . .+++|++|++++|.....+|.. ++++++|++|++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEEC
Confidence 5567788899998888887 6765 3 6888999999887556667765 788888999998
Q ss_pred ecccc-ccc-cCcccccCCC-------CCceEeeccCCCcccch--hccCCCCCcEEeccCCCCCCccchHHhhcCccCc
Q 039149 204 SNCVN-LTL-KLPLGMSKLG-------SLELLDVSHTGIRELPE--ELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLR 272 (536)
Q Consensus 204 ~~~~~-i~~-~lp~~i~~L~-------~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~ 272 (536)
+++ . +++ .+|..++++. +|++|++++|.+..+|. .++++++|++|++++| .++.+| . ++++++|+
T Consensus 523 s~N-~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~ 598 (876)
T 4ecn_A 523 ACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLT 598 (876)
T ss_dssp TTC-TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEES
T ss_pred cCC-CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcce
Confidence 888 6 775 5787776665 88888888888888888 7888888888888887 677888 3 88888888
Q ss_pred EEEeccCcccccccccccccccCCcccccccccCccC-CceEEEEecCchhhHHHhcCcc--------------------
Q 039149 273 VLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKY-LEVLELTLGSYHALQILLSSNK-------------------- 331 (536)
Q Consensus 273 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~~~-------------------- 331 (536)
+|++++|.+.. ....+..+++ |+.|+++.+....++.......
T Consensus 599 ~L~Ls~N~l~~----------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 599 DLKLDYNQIEE----------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp EEECCSSCCSC----------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred EEECcCCcccc----------------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 88888887653 2233444555 5555555444433221111110
Q ss_pred --------ccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEeec
Q 039149 332 --------LKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWR 403 (536)
Q Consensus 332 --------~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 403 (536)
...+|+.|+++++.- ..++.. .+..+++|+.|+++++ .+..++..... ...+....+++|+.|+|++
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~-~~~~l~~L~~L~Ls~N-~L~~ip~~~~~--~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEI-QKFPTE-LFATGSPISTIILSNN-LMTSIPENSLK--PKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCC-CSCCHH-HHHTTCCCSEEECCSC-CCSCCCTTSSS--CTTSCCTTGGGCCEEECCS
T ss_pred chhhhccccCCCcCEEEccCCcC-CccCHH-HHccCCCCCEEECCCC-cCCccChHHhc--cccccccccCCccEEECCC
Confidence 011455555554432 222211 2335666777777666 44444432211 0000001234899999999
Q ss_pred CCCCcCCcc-cc--cCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccc------ccccccccCCCc
Q 039149 404 CAKLKDSTF-LV--FAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVED------LPDLKSIHWKPL 474 (536)
Q Consensus 404 c~~l~~l~~-l~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~L~~~~~~~~ 474 (536)
| .++.+|. +. .+++|+.|+|++|.. ..+|. .+..+++|+.|+|++ +.-...++....
T Consensus 738 N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~lp~------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 738 N-KLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPT------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp S-CCCCCCGGGSTTTCTTCCEEECCSSCC-SSCCC------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred C-CCccchHHhhhccCCCcCEEEeCCCCC-Cccch------------hhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 8 6777654 44 789999999998743 33543 566889999999976 333456666777
Q ss_pred CCCccceEeeccCCCCCCCCCCCccccCCceEEEe
Q 039149 475 PFTHLKEMGVRACDQLEKLPLDSSSAKERKFVIRG 509 (536)
Q Consensus 475 ~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~ 509 (536)
.+++|+.|++++| ++..+|.... ..|+.+.-
T Consensus 804 ~L~~L~~L~Ls~N-~L~~Ip~~l~---~~L~~LdL 834 (876)
T 4ecn_A 804 TCPSLIQLQIGSN-DIRKVDEKLT---PQLYILDI 834 (876)
T ss_dssp GCSSCCEEECCSS-CCCBCCSCCC---SSSCEEEC
T ss_pred cCCCCCEEECCCC-CCCccCHhhc---CCCCEEEC
Confidence 8999999999998 5599998744 35555543
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=1.8e-24 Score=230.59 Aligned_cols=323 Identities=12% Similarity=0.137 Sum_probs=213.6
Q ss_pred ccccccceEEEeecCCccc------------------ccCC-C--CCCCcceEecccccchhcchhHHhcCCCcccEEEe
Q 039149 145 VKRWENVRRLSLMQNQIET------------------LSEV-P--TCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKM 203 (536)
Q Consensus 145 ~~~~~~l~~L~l~~~~~~~------------------l~~~-~--~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L 203 (536)
+..+.+++.|++.+|.+.. +|.. . .+++|++|++++|.....+|.. ++++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEEC
Confidence 5566788888888888887 7765 5 6888888888887555667765 788888888888
Q ss_pred ecccc-ccc-cCcccccCC------CCCceEeeccCCCcccch--hccCCCCCcEEeccCCCCCC-ccchHHhhcCccCc
Q 039149 204 SNCVN-LTL-KLPLGMSKL------GSLELLDVSHTGIRELPE--ELKLLVNLKCLTLRWTFELN-KIPRQLISNSSRLR 272 (536)
Q Consensus 204 ~~~~~-i~~-~lp~~i~~L------~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~ 272 (536)
+++ . +++ .+|..++++ .+|++|++++|.+..+|. .++++++|++|++++| .++ .+| . ++++++|+
T Consensus 281 s~n-~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~-~~~l~~L~ 356 (636)
T 4eco_A 281 ACN-RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-A-FGSEIKLA 356 (636)
T ss_dssp TTC-TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-C-CEEEEEES
T ss_pred cCC-CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-h-hCCCCCCC
Confidence 888 6 775 588888776 888888888888888888 7888888888888887 566 788 4 88888888
Q ss_pred EEEeccCcccccccccccccccCCcccccccccCccC-CceEEEEecCchhhHHHhcCcc--------------------
Q 039149 273 VLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKY-LEVLELTLGSYHALQILLSSNK-------------------- 331 (536)
Q Consensus 273 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~~~-------------------- 331 (536)
+|++++|.... .+..+..+++ |+.|+++.+....++.......
T Consensus 357 ~L~L~~N~l~~----------------lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 357 SLNLAYNQITE----------------IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp EEECCSSEEEE----------------CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred EEECCCCcccc----------------ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 88888876653 2233444444 5555555444332221111000
Q ss_pred ----------ccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEe
Q 039149 332 ----------LKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTI 401 (536)
Q Consensus 332 ----------~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l 401 (536)
...+|+.|+++++.- ..++.. .+..+++|++|+++++ .+..++...... ..+....+++|+.|++
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~-~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~--~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQI-SKFPKE-LFSTGSPLSSINLMGN-MLTEIPKNSLKD--ENENFKNTYLLTSIDL 495 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCC-CSCCTH-HHHTTCCCSEEECCSS-CCSBCCSSSSEE--TTEECTTGGGCCEEEC
T ss_pred hhcccccccccCCCCCEEECcCCcc-CcCCHH-HHccCCCCCEEECCCC-CCCCcCHHHhcc--ccccccccCCccEEEC
Confidence 112455555555432 222221 2334566666666665 333444322110 0000002338999999
Q ss_pred ecCCCCcCCcc-cc--cCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccc------ccccccccCC
Q 039149 402 WRCAKLKDSTF-LV--FAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVED------LPDLKSIHWK 472 (536)
Q Consensus 402 ~~c~~l~~l~~-l~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~L~~~~~~ 472 (536)
++| .++.+|. +. .+++|+.|+++++.. ..+|. .+..+++|+.|++++ +.-...++..
T Consensus 496 s~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~ip~------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 496 RFN-KLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPT------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CSS-CCCBCCGGGSTTTCTTCCEEECCSSCC-SSCCC------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred cCC-cCCccChhhhhccCCCcCEEECCCCCC-CCcCh------------hhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 888 6666654 44 789999999988744 33543 566789999999954 4345567777
Q ss_pred CcCCCccceEeeccCCCCCCCCCCCccccCCceEEEehH
Q 039149 473 PLPFTHLKEMGVRACDQLEKLPLDSSSAKERKFVIRGEA 511 (536)
Q Consensus 473 ~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~ 511 (536)
...+++|+.|++++| ++..+|.... ..|+.+.-..
T Consensus 562 l~~l~~L~~L~Ls~N-~l~~ip~~~~---~~L~~L~Ls~ 596 (636)
T 4eco_A 562 ITLCPSLTQLQIGSN-DIRKVNEKIT---PNISVLDIKD 596 (636)
T ss_dssp GGGCSSCCEEECCSS-CCCBCCSCCC---TTCCEEECCS
T ss_pred HhcCCCCCEEECCCC-cCCccCHhHh---CcCCEEECcC
Confidence 778999999999997 5599998644 4666665443
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-23 Score=211.18 Aligned_cols=271 Identities=15% Similarity=0.212 Sum_probs=220.6
Q ss_pred CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCc-ccccCCCCCceEeeccCCCcccch-hccCCCC
Q 039149 168 PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLP-LGMSKLGSLELLDVSHTGIRELPE-ELKLLVN 245 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~ 245 (536)
..++++++|++.++ .++.+|..++..+++|++|+++++ .+. .+| ..++.+++|++|++++|.+..+|. .++.+++
T Consensus 42 ~~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n-~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 42 ITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTS-CCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCCceEEEecCC-chhhCChhHhcccccCcEEECCCC-ccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 56789999999976 789999998999999999999999 898 665 589999999999999999998865 4899999
Q ss_pred CcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHH
Q 039149 246 LKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQI 325 (536)
Q Consensus 246 L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 325 (536)
|++|++++| .++.+|.+.++++++|++|++++|.... .....+..+++|+.|+++.+....+.
T Consensus 119 L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~- 181 (390)
T 3o6n_A 119 LTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER---------------IEDDTFQATTSLQNLQLSSNRLTHVD- 181 (390)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB---------------CCTTTTSSCTTCCEEECCSSCCSBCC-
T ss_pred CCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCc---------------cChhhccCCCCCCEEECCCCcCCccc-
Confidence 999999998 8899998766899999999999998764 33455788899999999887765542
Q ss_pred HhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCC
Q 039149 326 LLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCA 405 (536)
Q Consensus 326 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 405 (536)
....++|+.|+++++. +. .+...+.|++|+++++ .+..++.. .+++|+.|+++++
T Consensus 182 ----~~~l~~L~~L~l~~n~-l~------~~~~~~~L~~L~l~~n-~l~~~~~~------------~~~~L~~L~l~~n- 236 (390)
T 3o6n_A 182 ----LSLIPSLFHANVSYNL-LS------TLAIPIAVEELDASHN-SINVVRGP------------VNVELTILKLQHN- 236 (390)
T ss_dssp ----GGGCTTCSEEECCSSC-CS------EEECCSSCSEEECCSS-CCCEEECC------------CCSSCCEEECCSS-
T ss_pred ----cccccccceeeccccc-cc------ccCCCCcceEEECCCC-eeeecccc------------ccccccEEECCCC-
Confidence 1223488889888753 22 3445568999999987 45554321 5689999999999
Q ss_pred CCcCCcccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccccccccCCCcCCCccceEeec
Q 039149 406 KLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWKPLPFTHLKEMGVR 485 (536)
Q Consensus 406 ~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~L~~L~i~ 485 (536)
.++..++++.+++|+.|+++++..-...+ ..+..+++|+.|+++++ .++.++.....+++|+.|+++
T Consensus 237 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMY------------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCCEEES------------GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECC
T ss_pred CCcccHHHcCCCCccEEECCCCcCCCcCh------------hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECC
Confidence 78888899999999999999985433222 25677899999999997 788888777789999999999
Q ss_pred cCCCCCCCCCCC
Q 039149 486 ACDQLEKLPLDS 497 (536)
Q Consensus 486 ~C~~L~~lp~~~ 497 (536)
+| +++.+|...
T Consensus 304 ~n-~l~~~~~~~ 314 (390)
T 3o6n_A 304 HN-HLLHVERNQ 314 (390)
T ss_dssp SS-CCCCCGGGH
T ss_pred CC-cceecCccc
Confidence 98 677777543
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=3e-23 Score=219.20 Aligned_cols=149 Identities=23% Similarity=0.287 Sum_probs=116.5
Q ss_pred ceEEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecc
Q 039149 129 RNFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNC 206 (536)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 206 (536)
..++.+.+.++..+|.... .++++|++.+|.++.++. ...+++|++|++++| .++.++...|.++++|++|+++++
T Consensus 9 ~~~~~c~~~~l~~ip~~l~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC-SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred CcEEEeCCCCccccCCCcc-ccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCC
Confidence 3456677777777775333 678999999988887764 378889999999877 677777666888899999999988
Q ss_pred ccccccCc-ccccCCCCCceEeeccCCCcccch-hccCCCCCcEEeccCCCCCCc--cchHHhhcCccCcEEEeccCccc
Q 039149 207 VNLTLKLP-LGMSKLGSLELLDVSHTGIRELPE-ELKLLVNLKCLTLRWTFELNK--IPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 207 ~~i~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
.++ .+| ..++.+.+|++|++++|.+..+|. .++++++|++|++++| .++. +|.. ++++++|++|++++|...
T Consensus 87 -~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 87 -PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp -CCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred -cCC-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccc
Confidence 787 554 678888888888888888888775 5888888888888887 5554 5765 888888888888887654
Q ss_pred c
Q 039149 283 N 283 (536)
Q Consensus 283 ~ 283 (536)
.
T Consensus 163 ~ 163 (570)
T 2z63_A 163 S 163 (570)
T ss_dssp E
T ss_pred e
Confidence 4
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.5e-23 Score=217.21 Aligned_cols=143 Identities=21% Similarity=0.251 Sum_probs=120.4
Q ss_pred ceEEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecc
Q 039149 129 RNFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNC 206 (536)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 206 (536)
++.+...+..+..+|.... .++++|++.+|.+..++. ...+++|++|++++| .++.+++..+.++++|++|+++++
T Consensus 2 ~~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CCEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred cceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence 3567777778888886544 799999999999988764 388999999999987 677775555899999999999999
Q ss_pred ccccccCcccccCCCCCceEeeccCCCcc--cchhccCCCCCcEEeccCCCCCCccchHHhhcCccC--cEEEeccCcc
Q 039149 207 VNLTLKLPLGMSKLGSLELLDVSHTGIRE--LPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRL--RVLRMLGTGL 281 (536)
Q Consensus 207 ~~i~~~lp~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~ 281 (536)
.++ .+|.. .+.+|++|++++|.+.. +|..++++++|++|++++| .++. . .+..+++| ++|++.+|..
T Consensus 80 -~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~--~-~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 -KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK--S-SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp -CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG--G-GGGGGTTSCEEEEEEEECTT
T ss_pred -cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch--h-hccccccceeeEEEeecccc
Confidence 999 89887 89999999999999885 5789999999999999998 5655 2 27788888 9999998876
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=2.1e-23 Score=222.01 Aligned_cols=149 Identities=21% Similarity=0.231 Sum_probs=124.3
Q ss_pred ceEEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecc
Q 039149 129 RNFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNC 206 (536)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 206 (536)
...+.+.+.++..+|.... ..+++|++.+|.++.+++ ...+++|++|++++| .+..+++..|.++++|++|+++++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCCC-CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCC
Confidence 3456777778888876443 689999999999998854 388999999999987 666675555899999999999999
Q ss_pred ccccccCcccccCCCCCceEeeccCCCccc-chhccCCCCCcEEeccCCCCCCcc--chHHhhcCccCcEEEeccCcccc
Q 039149 207 VNLTLKLPLGMSKLGSLELLDVSHTGIREL-PEELKLLVNLKCLTLRWTFELNKI--PRQLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 207 ~~i~~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l--p~~~i~~l~~L~~L~l~~~~~~~ 283 (536)
.+.+..|..++++++|++|++++|.+..+ |..++++++|++|++++| .+..+ |. +..+++|++|++++|....
T Consensus 92 -~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 92 -PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPK--GFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp -CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCT--TCCCTTCCEEECCSSCCCE
T ss_pred -cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCccc--ccCCcccCEEEcccCcccc
Confidence 88834578899999999999999999987 567999999999999998 67765 44 5669999999999987764
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=7.1e-23 Score=210.51 Aligned_cols=318 Identities=18% Similarity=0.235 Sum_probs=194.8
Q ss_pred ceEEEecCCCcccCccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecccc
Q 039149 129 RNFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVN 208 (536)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~ 208 (536)
-..+...+..+..++.+..+.+++.|++.++.+..++....+++|++|++++| .++.++. +.++++|++|+++++ .
T Consensus 70 L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n-~ 145 (466)
T 1o6v_A 70 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSN-T 145 (466)
T ss_dssp CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEEEEEE-E
T ss_pred CCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCC-CCCCChH--HcCCCCCCEEECCCC-c
Confidence 35667777777777778888899999999999988887889999999999977 6777776 889999999999999 8
Q ss_pred ccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccccccc-c
Q 039149 209 LTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQ-A 287 (536)
Q Consensus 209 i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~-~ 287 (536)
+. .+|. ++.+.+|++|++.+ .+..++ .++++++|++|++++| .+..++. +.++++|++|++.+|......+ +
T Consensus 146 l~-~~~~-~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~ 218 (466)
T 1o6v_A 146 IS-DISA-LSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQISDITPLG 218 (466)
T ss_dssp EC-CCGG-GTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCCGGGG
T ss_pred cC-CChh-hccCCcccEeecCC-cccCch-hhccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCccccccccc
Confidence 88 7664 77788888887753 444444 3777777777777776 5666654 6777777777777776543100 0
Q ss_pred c---cc-ccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceeccccccccccccc
Q 039149 288 S---ED-SVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLN 363 (536)
Q Consensus 288 ~---~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~ 363 (536)
. +. ..+.+.....+..+..+++|+.|+++.+.......+. ..++|+.|+++++.- ...+ .+..+++|+
T Consensus 219 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----~l~~L~~L~l~~n~l-~~~~---~~~~l~~L~ 290 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS----GLTKLTELKLGANQI-SNIS---PLAGLTALT 290 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGT----TCTTCSEEECCSSCC-CCCG---GGTTCTTCS
T ss_pred ccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhh----cCCCCCEEECCCCcc-Cccc---cccCCCccC
Confidence 0 00 0000001111223444444555544444333332211 112455555544322 1111 244455555
Q ss_pred ceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCCcc
Q 039149 364 ELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVP 443 (536)
Q Consensus 364 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 443 (536)
.|++++| .++.++. .+.+++|+.|++++| .+..++.+..+++|+.|++++|. +..++
T Consensus 291 ~L~L~~n-~l~~~~~-----------~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~--------- 347 (466)
T 1o6v_A 291 NLELNEN-QLEDISP-----------ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNK-VSDVS--------- 347 (466)
T ss_dssp EEECCSS-CCSCCGG-----------GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSC-CCCCG---------
T ss_pred eEEcCCC-cccCchh-----------hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCCc-cCCch---------
Confidence 5555554 2222221 015666777777666 55555556666777777776653 22221
Q ss_pred ccccCCCCCCccceeccccccccccccCCCcCCCccceEeeccCCCCCCCCC
Q 039149 444 EMMRHMSPFENLQRLHVEDLPDLKSIHWKPLPFTHLKEMGVRACDQLEKLPL 495 (536)
Q Consensus 444 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~ 495 (536)
....+++|+.|++.++. +..+.. ...+++|+.|++.+| .+..+|.
T Consensus 348 ----~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 348 ----SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp ----GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCE-EEECCCB
T ss_pred ----hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCC-cccCCch
Confidence 35567888888888774 444443 566788888888886 4444444
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=1.6e-23 Score=220.32 Aligned_cols=148 Identities=22% Similarity=0.285 Sum_probs=124.1
Q ss_pred EEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccc
Q 039149 132 LVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNL 209 (536)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i 209 (536)
+...+..+..+|.... .++++|++.+|.+..++. ...+++|++|++++| .++.+++..+..+++|++|+++++ .+
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-HL 86 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred EECCCCccccccccCC-CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC-cc
Confidence 3445556777776443 789999999999988754 388999999999987 777777666899999999999999 89
Q ss_pred cccCccc-ccCCCCCceEeeccCCCcc--cchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccc
Q 039149 210 TLKLPLG-MSKLGSLELLDVSHTGIRE--LPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 210 ~~~lp~~-i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 283 (536)
. .+|.. ++++.+|++|++++|.+.. .|..++++++|++|++++|..+..+|...++++++|++|++.+|....
T Consensus 87 ~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 87 S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp C-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred C-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 8 66654 9999999999999999884 467899999999999999865788886559999999999999988765
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.5e-23 Score=222.17 Aligned_cols=302 Identities=16% Similarity=0.167 Sum_probs=182.4
Q ss_pred cccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCc-ccccCCCC
Q 039149 146 KRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLP-LGMSKLGS 222 (536)
Q Consensus 146 ~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp-~~i~~L~~ 222 (536)
..+.+++.+++.++.+..+|.. ..+++|++|++++| .+..++...+..+++|++|+|+++ .+. .+| ..++++++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~~ 124 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIR-YLPPHVFQNVPL 124 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCC-CCCTTTTTTCTT
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCC-cCC-CCCHHHHcCCCC
Confidence 3457889999999988888874 67899999999977 677777655899999999999999 888 555 45688999
Q ss_pred CceEeeccCCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccccccccccccc-ccCCcccc
Q 039149 223 LELLDVSHTGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSV-LFGGGEVL 300 (536)
Q Consensus 223 L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~~ 300 (536)
|++|++++|.+..+|.. ++++++|++|++++| .++.+++..++++++|++|++++|.....+.+.+... .-.-....
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 203 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSC
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCc
Confidence 99999999999999877 488999999999998 7777776558899999999999987764211110000 00000001
Q ss_pred cccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeeccc
Q 039149 301 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDY 380 (536)
Q Consensus 301 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 380 (536)
+..+....+|+.|+++.+....++. ....+|+.|+++++.-.. . +.+..+++|+.|+++++ .+..+....
T Consensus 204 l~~l~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~n~l~~-~---~~l~~l~~L~~L~Ls~N-~l~~~~~~~ 273 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTD-T---AWLLNYPGLVEVDLSYN-ELEKIMYHP 273 (597)
T ss_dssp CSEEECCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCSSCCCC-C---GGGGGCTTCSEEECCSS-CCCEEESGG
T ss_pred cccccCCchhheeeccCCccccccc-----ccCCCCCEEECCCCCCCC-C---hhhccCCCCCEEECCCC-ccCCCCHHH
Confidence 1112222334444443333222211 011245555555543221 1 14555666666666655 333332221
Q ss_pred ccccccccCCcccCCccEEEeecCCCCcCCcc-cccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceec
Q 039149 381 TEIVRKRREPFVFRSLHHVTIWRCAKLKDSTF-LVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLH 459 (536)
Q Consensus 381 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 459 (536)
.. .+++|+.|+|++| .+..++. ...+|+|+.|+|++|. +..+|. .+..+++|+.|+
T Consensus 274 ~~---------~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~------------~~~~l~~L~~L~ 330 (597)
T 3oja_B 274 FV---------KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVER------------NQPQFDRLENLY 330 (597)
T ss_dssp GT---------TCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGG------------GHHHHTTCSEEE
T ss_pred hc---------CccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCc------------ccccCCCCCEEE
Confidence 11 4566666666665 4444332 2345666666666653 223332 334456666666
Q ss_pred cccccccccccCCCcCCCccceEeeccC
Q 039149 460 VEDLPDLKSIHWKPLPFTHLKEMGVRAC 487 (536)
Q Consensus 460 l~~~~~L~~~~~~~~~~~~L~~L~i~~C 487 (536)
++++ .+..++ ...+++|+.|+++++
T Consensus 331 L~~N-~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 331 LDHN-SIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp CCSS-CCCCCC--CCTTCCCSEEECCSS
T ss_pred CCCC-CCCCcC--hhhcCCCCEEEeeCC
Confidence 6665 344333 344566666666554
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=3.8e-23 Score=218.40 Aligned_cols=360 Identities=17% Similarity=0.119 Sum_probs=230.4
Q ss_pred eEEEecCCCcccCc--cccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeec
Q 039149 130 NFLVCAGEGLKEAP--DVKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSN 205 (536)
Q Consensus 130 ~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~ 205 (536)
..+...+..+..++ .+..+.++++|++.+|.+..++.. ..+++|++|++++| .++.+++..|.++++|++|++++
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVE 109 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccc
Confidence 34555555555554 456778999999999999887653 78999999999987 67778766699999999999999
Q ss_pred cccccccCcc-cccCCCCCceEeeccCCCcc--cchhccCCCCCcEEeccCCCCCCccchHHhhcCccC----cEEEecc
Q 039149 206 CVNLTLKLPL-GMSKLGSLELLDVSHTGIRE--LPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRL----RVLRMLG 278 (536)
Q Consensus 206 ~~~i~~~lp~-~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L----~~L~l~~ 278 (536)
+ .++ .+|. .++++++|++|++++|.+.. +|..++++++|++|++++| .++.++...++.+++| ++|++.+
T Consensus 110 n-~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 110 T-NLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp S-CCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred c-ccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCC
Confidence 9 898 7765 69999999999999998875 7999999999999999998 7777765557788877 7888877
Q ss_pred Cccccccccccccc------cc----------------------------------------------------------
Q 039149 279 TGLLNFHQASEDSV------LF---------------------------------------------------------- 294 (536)
Q Consensus 279 ~~~~~~~~~~~~~~------~~---------------------------------------------------------- 294 (536)
+.......+..... +.
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 76544322111000 00
Q ss_pred --CCcccccccccCccCCceEEEEecCchhhHHHhcC---------------------------------------cccc
Q 039149 295 --GGGEVLIQELLGLKYLEVLELTLGSYHALQILLSS---------------------------------------NKLK 333 (536)
Q Consensus 295 --~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~---------------------------------------~~~~ 333 (536)
.........+..+++|+.|+++.+....++..... ....
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 00001112233445555555554333222110000 0122
Q ss_pred ccceeEeecccCCcceecccccccccccccceecccccccceeecccc-------------ccccccc--CCcccCCccE
Q 039149 334 SCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYT-------------EIVRKRR--EPFVFRSLHH 398 (536)
Q Consensus 334 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~-------------~~~~~~~--~~~~~~~L~~ 398 (536)
++|+.|+++++.-.........+..+++|++|++++| .+..++.... ...+..+ ....+++|+.
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 3667777766542221111114667778888888776 2333332211 0001111 1125667777
Q ss_pred EEeecCCCCcC-C-cccccCCCccEEEEecCchhh-hhhccCCcCCccccccCCCCCCccceeccccccccccc-cCCCc
Q 039149 399 VTIWRCAKLKD-S-TFLVFAPNLKSLVLRNCHAME-EIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSI-HWKPL 474 (536)
Q Consensus 399 L~l~~c~~l~~-l-~~l~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~-~~~~~ 474 (536)
|++++| .+.. . ..+..+++|+.|++++|.... .+| ..+..+++|+.|++++| .+..+ +....
T Consensus 426 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 491 (570)
T 2z63_A 426 LDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDLSQC-QLEQLSPTAFN 491 (570)
T ss_dssp EECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEECTTS-CCCEECTTTTT
T ss_pred EeCcCC-cccccchhhhhcCCcCcEEECcCCcCccccch------------hhhhcccCCCEEECCCC-ccccCChhhhh
Confidence 777776 3333 2 235567777777777765431 233 36778899999999998 45555 55667
Q ss_pred CCCccceEeeccCCCCCCCCCCCccccCCceEEEe
Q 039149 475 PFTHLKEMGVRACDQLEKLPLDSSSAKERKFVIRG 509 (536)
Q Consensus 475 ~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~ 509 (536)
.+++|+.|++++| +++.+|...-.....++.+.-
T Consensus 492 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 492 SLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred cccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEe
Confidence 7899999999997 788887653322256666654
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=3.1e-23 Score=203.49 Aligned_cols=296 Identities=15% Similarity=0.115 Sum_probs=216.9
Q ss_pred ccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEee
Q 039149 149 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDV 228 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L 228 (536)
.+++.+++.++.++.+|... .++|++|++++| .++.++...+.++++|++|+++++ .+++..|..++++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 36789999999998888653 479999999987 677787656899999999999999 898334788999999999999
Q ss_pred ccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCcc
Q 039149 229 SHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLK 308 (536)
Q Consensus 229 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 308 (536)
++|.+..+|..+. ++|++|++++| .++.+|...+.++++|++|+++++.... .......+..+
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l- 172 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN-------------SGFEPGAFDGL- 172 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG-------------GGSCTTSSCSC-
T ss_pred CCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc-------------CCCCcccccCC-
Confidence 9999999998876 89999999998 7888888778999999999999987753 11234445555
Q ss_pred CCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeeccccccccccc
Q 039149 309 YLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRR 388 (536)
Q Consensus 309 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 388 (536)
+|+.|+++.+....++.. ..++|+.|+++++.- ...+.. .+..+++|++|+++++ .+..++.....
T Consensus 173 ~L~~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~i-~~~~~~-~l~~l~~L~~L~L~~N-~l~~~~~~~~~------ 238 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKD-----LPETLNELHLDHNKI-QAIELE-DLLRYSKLYRLGLGHN-QIRMIENGSLS------ 238 (332)
T ss_dssp CCSCCBCCSSBCSSCCSS-----SCSSCSCCBCCSSCC-CCCCTT-SSTTCTTCSCCBCCSS-CCCCCCTTGGG------
T ss_pred ccCEEECcCCCCCccCcc-----ccCCCCEEECCCCcC-CccCHH-HhcCCCCCCEEECCCC-cCCcCChhHhh------
Confidence 788888887766554321 124888999987643 333321 6788899999999987 55555433222
Q ss_pred CCcccCCccEEEeecCCCCcCCc-ccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccccccc-
Q 039149 389 EPFVFRSLHHVTIWRCAKLKDST-FLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDL- 466 (536)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L- 466 (536)
.+++|+.|++++| .++.+| .+..+++|+.|+++++ .++.++...+... .....+++|+.|++.+++..
T Consensus 239 ---~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~-----~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 239 ---FLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPV-----GFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp ---GCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCS-----SCCSSSCCBSEEECCSSSSCG
T ss_pred ---CCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHcccc-----ccccccccccceEeecCcccc
Confidence 7889999999998 677765 4788999999999986 4555544222211 01123678999999987633
Q ss_pred -ccccCCCcCCCccceEeeccCC
Q 039149 467 -KSIHWKPLPFTHLKEMGVRACD 488 (536)
Q Consensus 467 -~~~~~~~~~~~~L~~L~i~~C~ 488 (536)
...+.....+++|+.+++.++.
T Consensus 309 ~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 309 WEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGSCGGGGTTBCCSTTEEC----
T ss_pred cccCcccccccchhhhhhccccc
Confidence 1222234457788888888764
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=7.1e-23 Score=217.91 Aligned_cols=149 Identities=23% Similarity=0.244 Sum_probs=115.8
Q ss_pred eEEEecCCCcccCc--cccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeec
Q 039149 130 NFLVCAGEGLKEAP--DVKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSN 205 (536)
Q Consensus 130 ~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~ 205 (536)
..+...+..+..++ .+..+.++++|++.+|.+..+++. ..+++|++|++++| .++.+++..++++++|++|++++
T Consensus 35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTT
T ss_pred CEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccC
Confidence 44555665665554 356778999999999999887543 78999999999987 67777555589999999999999
Q ss_pred cccccccCc-ccccCCCCCceEeeccCCCc--ccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCc----EEEecc
Q 039149 206 CVNLTLKLP-LGMSKLGSLELLDVSHTGIR--ELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLR----VLRMLG 278 (536)
Q Consensus 206 ~~~i~~~lp-~~i~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~----~L~l~~ 278 (536)
| .+. .+| ..++++.+|++|++++|.+. .+|..++++++|++|++++| .++.++...++.+++|+ +|++++
T Consensus 114 n-~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 114 T-KLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp S-CCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred C-ccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeeccC
Confidence 9 888 665 77999999999999999887 57999999999999999998 67766544355555443 555555
Q ss_pred Cccc
Q 039149 279 TGLL 282 (536)
Q Consensus 279 ~~~~ 282 (536)
+...
T Consensus 191 n~l~ 194 (606)
T 3vq2_A 191 NPID 194 (606)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 5443
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.2e-22 Score=213.91 Aligned_cols=143 Identities=22% Similarity=0.277 Sum_probs=116.3
Q ss_pred ceEEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecc
Q 039149 129 RNFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNC 206 (536)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 206 (536)
...+.+.+..+..+|.... .+++.|++.+|.+..++. ...+++|++|++++| .++.++++.|.++++|++|+++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC
Confidence 3567777778888876443 789999999999988864 488899999999977 777776666899999999999999
Q ss_pred ccccccCcccccCCCCCceEeeccCCCcccc--hhccCCCCCcEEeccCCCCCCccchHHhhcCccC--cEEEeccCcc
Q 039149 207 VNLTLKLPLGMSKLGSLELLDVSHTGIRELP--EELKLLVNLKCLTLRWTFELNKIPRQLISNSSRL--RVLRMLGTGL 281 (536)
Q Consensus 207 ~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~ 281 (536)
.++ .+|.. .+.+|++|++++|.+..+| ..++++++|++|++++| .++..+ +..+++| ++|++.+|..
T Consensus 111 -~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 -RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp -CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred -cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 898 88877 7999999999999888765 78999999999999987 555432 5556666 9999988876
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=2e-22 Score=214.53 Aligned_cols=151 Identities=19% Similarity=0.173 Sum_probs=122.2
Q ss_pred eEEEecCCCcccCc--cccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeec
Q 039149 130 NFLVCAGEGLKEAP--DVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSN 205 (536)
Q Consensus 130 ~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~ 205 (536)
..+...+..+..++ .+..+.++++|++.+|.+..+.+ ...+++|++|++++| .+..+++..++++++|++|++++
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~ 114 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQ 114 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTT
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeeccc
Confidence 45566666666553 45677899999999999887644 388999999999987 66666555589999999999999
Q ss_pred cccccccC-cccccCCCCCceEeeccCCCcccc-hhccCCCCCcEEeccCCCCCCccchHHhhcCccCc--EEEeccCcc
Q 039149 206 CVNLTLKL-PLGMSKLGSLELLDVSHTGIRELP-EELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLR--VLRMLGTGL 281 (536)
Q Consensus 206 ~~~i~~~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~--~L~l~~~~~ 281 (536)
+ .++ .+ |..++++++|++|++++|.+..++ ..+..+++|++|++++| .++.++...++.+++|+ +|++.+|..
T Consensus 115 n-~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 115 T-GIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp S-CCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred c-Ccc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCcc
Confidence 9 898 66 677999999999999999998763 23445999999999998 78887666699999999 888888876
Q ss_pred ccc
Q 039149 282 LNF 284 (536)
Q Consensus 282 ~~~ 284 (536)
...
T Consensus 192 ~~~ 194 (606)
T 3t6q_A 192 AGI 194 (606)
T ss_dssp CEE
T ss_pred Ccc
Confidence 654
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=6e-23 Score=223.82 Aligned_cols=131 Identities=23% Similarity=0.284 Sum_probs=80.1
Q ss_pred ccccccceEEEeecCCccc-ccCCCCCCCcceEecccccchh-cchhHHhcCCCcccEEEeeccccccccCcccccCCCC
Q 039149 145 VKRWENVRRLSLMQNQIET-LSEVPTCPHLLTLFLDFNENLN-MIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGS 222 (536)
Q Consensus 145 ~~~~~~l~~L~l~~~~~~~-l~~~~~~~~Lr~L~l~~~~~l~-~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~ 222 (536)
...+.+++.|++.+|.+.. ++....+++|++|++++| .+. .+|.. +..+++|++|++++| .+.+.+|.. .+.+
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~--~l~~ 270 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGDFSRA-ISTCTELKLLNISSN-QFVGPIPPL--PLKS 270 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS-CCCSCHHHH-TTTCSSCCEEECCSS-CCEESCCCC--CCTT
T ss_pred cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC-cCCCcccHH-HhcCCCCCEEECCCC-cccCccCcc--ccCC
Confidence 3455677777777776655 344467777788887766 444 33433 677777777777777 665344432 5566
Q ss_pred CceEeeccCCCc-ccchhccCC-CCCcEEeccCCCCCC-ccchHHhhcCccCcEEEeccCccc
Q 039149 223 LELLDVSHTGIR-ELPEELKLL-VNLKCLTLRWTFELN-KIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 223 L~~L~L~~~~i~-~lp~~i~~L-~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
|++|++++|.+. .+|..+..+ ++|++|++++| .++ .+|.. ++++++|++|++.+|...
T Consensus 271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPF-FGSCSLLESLALSSNNFS 331 (768)
T ss_dssp CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGG-GGGCTTCCEEECCSSEEE
T ss_pred CCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchH-HhcCCCccEEECCCCccc
Confidence 666666666554 556555554 66666666666 333 44543 666666666666666544
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=8.4e-23 Score=209.54 Aligned_cols=319 Identities=14% Similarity=0.103 Sum_probs=214.6
Q ss_pred eEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccC-cccccCCCCCceEeecc
Q 039149 152 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLGSLELLDVSH 230 (536)
Q Consensus 152 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~~L~~L~L~~ 230 (536)
+.+...++.++.+|. -.++|++|++++| .++.+++..+.++++|++|+++++ .+.+.+ |..++++++|++|++++
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCC-ccCcCChhHhccCccccEEECcCC-cccceECcccccccccCCEEeCCC
Confidence 456777778888887 4489999999987 677775555999999999999999 775345 56789999999999999
Q ss_pred CCCccc-chhccCCCCCcEEeccCCCCCCc-cc-hHHhhcCccCcEEEeccCcccccccccccccccCCccccccc-ccC
Q 039149 231 TGIREL-PEELKLLVNLKCLTLRWTFELNK-IP-RQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQE-LLG 306 (536)
Q Consensus 231 ~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~-lp-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 306 (536)
|.+..+ |..++++++|++|++++| .++. +| ...++++++|++|++++|.+.. ..... +..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------------~~~~~~~~~ 152 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKK---------------IQPASFFLN 152 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCS---------------CCCCGGGGG
T ss_pred CccCccChhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCc---------------cCcccccCC
Confidence 999876 778999999999999998 6664 23 2337889999999999998764 22333 778
Q ss_pred ccCCceEEEEecCchhhHH--HhcCccccccceeEeecccCCcceeccc------ccccccccccceecccccc------
Q 039149 307 LKYLEVLELTLGSYHALQI--LLSSNKLKSCIRSLFLQLAGDATSIVDA------TAFADLNHLNELYINKGFE------ 372 (536)
Q Consensus 307 l~~L~~L~l~~~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~------~~l~~~~~L~~L~l~~~~~------ 372 (536)
+++|+.|+++.+....... +... ...+++.|+++++.-....... ..+..+++|++|+++++.-
T Consensus 153 l~~L~~L~L~~n~l~~~~~~~l~~l--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 153 MRRFHVLDLTFNKVKSICEEDLLNF--QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp CTTCCEEECTTCCBSCCCTTTSGGG--TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred CCcccEEeCCCCcccccChhhhhcc--ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence 8899999988766543311 1111 0125666666654322111100 0122345666666666521
Q ss_pred ----------cceeeccccc----------cc----ccccCCcccCCccEEEeecCCCCcCC--cccccCCCccEEEEec
Q 039149 373 ----------LEELKIDYTE----------IV----RKRREPFVFRSLHHVTIWRCAKLKDS--TFLVFAPNLKSLVLRN 426 (536)
Q Consensus 373 ----------l~~l~~~~~~----------~~----~~~~~~~~~~~L~~L~l~~c~~l~~l--~~l~~l~~L~~L~l~~ 426 (536)
++.+...... .. ..+... ..++|+.|+++++ .+... ..++.+++|+.|++++
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL-EASGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGG-TTSCCCEEECCSS-CCCEECTTTTTTCTTCCEEECTT
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccc-cccCceEEEecCc-cccccchhhcccCCCCCEEECCC
Confidence 1111111000 00 000011 3478999999999 56543 3478899999999999
Q ss_pred CchhhhhhccCCcCCccccccCCCCCCccceecccccccccccc-CCCcCCCccceEeeccCCCCCCC-CCCCccccCCc
Q 039149 427 CHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIH-WKPLPFTHLKEMGVRACDQLEKL-PLDSSSAKERK 504 (536)
Q Consensus 427 c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~-~~~~~~~~L~~L~i~~C~~L~~l-p~~~~~~~~~l 504 (536)
|..-...+ ..+..+++|+.|+++++ .+..+. .....+++|+.|++++| +++.+ |...... .+|
T Consensus 309 n~l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L 373 (455)
T 3v47_A 309 NEINKIDD------------NAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGL-PNL 373 (455)
T ss_dssp SCCCEECT------------TTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTC-TTC
T ss_pred CcccccCh------------hHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhhcccc-ccc
Confidence 85433222 25677899999999998 556553 44567899999999998 56665 4444433 566
Q ss_pred eEEEe
Q 039149 505 FVIRG 509 (536)
Q Consensus 505 ~~i~~ 509 (536)
+.+.-
T Consensus 374 ~~L~L 378 (455)
T 3v47_A 374 KELAL 378 (455)
T ss_dssp CEEEC
T ss_pred cEEEC
Confidence 66544
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=3.1e-22 Score=196.19 Aligned_cols=294 Identities=17% Similarity=0.168 Sum_probs=218.9
Q ss_pred ccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccC-cccccCCCCCceEe
Q 039149 149 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLGSLELLD 227 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~~L~~L~ 227 (536)
.+++.+++.++.+..+|... .+++++|++++| .++.++...+.++++|++|+++++ .+. .+ |..++++++|++|+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KIS-KISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCC-CBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCC-eeCHHHhcCCCCCCEEE
Confidence 46788999988888887643 478999999987 788888766999999999999999 898 55 88899999999999
Q ss_pred eccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCc
Q 039149 228 VSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGL 307 (536)
Q Consensus 228 L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 307 (536)
+++|.++.+|..+. ++|++|++++| .++.++...+.++++|++|+++++.... .......+..+
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l 170 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGM 170 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGC
T ss_pred CCCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc-------------cCcChhhccCC
Confidence 99999999998775 79999999998 7888888779999999999999987753 12345667888
Q ss_pred cCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccc
Q 039149 308 KYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKR 387 (536)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 387 (536)
++|+.|.++.+....++.. ..++|+.|+++++. +...... .+..+++|++|+++++ .+..++.....
T Consensus 171 ~~L~~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~~----- 237 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQG-----LPPSLTELHLDGNK-ITKVDAA-SLKGLNNLAKLGLSFN-SISAVDNGSLA----- 237 (330)
T ss_dssp TTCCEEECCSSCCCSCCSS-----CCTTCSEEECTTSC-CCEECTG-GGTTCTTCCEEECCSS-CCCEECTTTGG-----
T ss_pred CCcCEEECCCCccccCCcc-----ccccCCEEECCCCc-CCccCHH-HhcCCCCCCEEECCCC-cCceeChhhcc-----
Confidence 9999999987776554321 12489999998865 3333222 6788899999999987 45555433222
Q ss_pred cCCcccCCccEEEeecCCCCcCCc-ccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccccccc
Q 039149 388 REPFVFRSLHHVTIWRCAKLKDST-FLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDL 466 (536)
Q Consensus 388 ~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 466 (536)
.+++|+.|++++| .++.+| ++..+++|++|+++++ .++.++...+... .....++.|+.|++.+.+ +
T Consensus 238 ----~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~-----~~~~~~~~l~~l~l~~N~-~ 305 (330)
T 1xku_A 238 ----NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPP-----GYNTKKASYSGVSLFSNP-V 305 (330)
T ss_dssp ----GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCS-----SCCTTSCCCSEEECCSSS-S
T ss_pred ----CCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCc-----ccccccccccceEeecCc-c
Confidence 7789999999998 676664 4778899999999986 4555544222211 112235788888888875 3
Q ss_pred cccc---CCCcCCCccceEeeccC
Q 039149 467 KSIH---WKPLPFTHLKEMGVRAC 487 (536)
Q Consensus 467 ~~~~---~~~~~~~~L~~L~i~~C 487 (536)
..+. .....+++|+.++++++
T Consensus 306 ~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 306 QYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccCccccccccceeEEEeccc
Confidence 3222 23344667777777664
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=8.1e-23 Score=216.51 Aligned_cols=279 Identities=14% Similarity=0.191 Sum_probs=190.7
Q ss_pred CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCc-ccccCCCCCceEeeccCCCcccchh-ccCCCC
Q 039149 168 PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLP-LGMSKLGSLELLDVSHTGIRELPEE-LKLLVN 245 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~ 245 (536)
..+++++.|++.++ .+..+|..++..+++|++|+++++ .+. .+| ..++.+.+|++|+|++|.+..+|.. ++.+++
T Consensus 48 l~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 48 ITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GGGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTS-CCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCC-CCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 46789999999976 788999998999999999999999 898 554 5899999999999999999988765 699999
Q ss_pred CcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHH
Q 039149 246 LKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQI 325 (536)
Q Consensus 246 L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 325 (536)
|++|++++| .++.+|.+.++++++|++|++++|.+.. .....+..+++|+.|+++.+....++
T Consensus 125 L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~~- 187 (597)
T 3oja_B 125 LTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER---------------IEDDTFQATTSLQNLQLSSNRLTHVD- 187 (597)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCB---------------CCTTTTTTCTTCCEEECTTSCCSBCC-
T ss_pred CCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCC---------------CChhhhhcCCcCcEEECcCCCCCCcC-
Confidence 999999998 8899998866999999999999998764 33445777888888888776654432
Q ss_pred HhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeeccc-----------ccccccccCCcccC
Q 039149 326 LLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDY-----------TEIVRKRREPFVFR 394 (536)
Q Consensus 326 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~-----------~~~~~~~~~~~~~~ 394 (536)
....++|+.|+++++. +. .+...++|+.|+++++ .+..++... ....+ .+..+.++
T Consensus 188 ----~~~l~~L~~L~l~~n~-l~------~l~~~~~L~~L~ls~n-~l~~~~~~~~~~L~~L~L~~n~l~~-~~~l~~l~ 254 (597)
T 3oja_B 188 ----LSLIPSLFHANVSYNL-LS------TLAIPIAVEELDASHN-SINVVRGPVNVELTILKLQHNNLTD-TAWLLNYP 254 (597)
T ss_dssp ----GGGCTTCSEEECCSSC-CS------EEECCTTCSEEECCSS-CCCEEECSCCSCCCEEECCSSCCCC-CGGGGGCT
T ss_pred ----hhhhhhhhhhhcccCc-cc------cccCCchhheeeccCC-cccccccccCCCCCEEECCCCCCCC-ChhhccCC
Confidence 1112256666665532 11 2223344555555544 222221100 00000 00001556
Q ss_pred CccEEEeecCCCCcCC--cccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccccccccCC
Q 039149 395 SLHHVTIWRCAKLKDS--TFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWK 472 (536)
Q Consensus 395 ~L~~L~l~~c~~l~~l--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 472 (536)
+|+.|+|++| .+..+ ..++.+++|+.|++++|. +..++ .....+|+|+.|+|+++ .+..++..
T Consensus 255 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~------------~~~~~l~~L~~L~Ls~N-~l~~i~~~ 319 (597)
T 3oja_B 255 GLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALN------------LYGQPIPTLKVLDLSHN-HLLHVERN 319 (597)
T ss_dssp TCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSC-CCEEE------------CSSSCCTTCCEEECCSS-CCCCCGGG
T ss_pred CCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCC-CCCCC------------cccccCCCCcEEECCCC-CCCccCcc
Confidence 6666666666 44432 245566666666666642 33332 24456788888888887 56666666
Q ss_pred CcCCCccceEeeccCCCCCCCCC
Q 039149 473 PLPFTHLKEMGVRACDQLEKLPL 495 (536)
Q Consensus 473 ~~~~~~L~~L~i~~C~~L~~lp~ 495 (536)
...+++|+.|++++| ++..+|.
T Consensus 320 ~~~l~~L~~L~L~~N-~l~~~~~ 341 (597)
T 3oja_B 320 QPQFDRLENLYLDHN-SIVTLKL 341 (597)
T ss_dssp HHHHTTCSEEECCSS-CCCCCCC
T ss_pred cccCCCCCEEECCCC-CCCCcCh
Confidence 666788888888886 4666664
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=8e-23 Score=208.65 Aligned_cols=121 Identities=18% Similarity=0.233 Sum_probs=67.7
Q ss_pred cccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCce
Q 039149 146 KRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLEL 225 (536)
Q Consensus 146 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~ 225 (536)
..+.+++.|++.++.+..+|....+++|++|++++| .++.++ ++.+++|++|+++++ .++ .+| ++++.+|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N-~l~-~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSN-KLT-NLD--VTPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSS-CCS-CCC--CTTCTTCCE
T ss_pred hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCC-CCc-eee--cCCCCcCCE
Confidence 334555666666655555554455566666666654 444443 455566666666665 555 443 555666666
Q ss_pred EeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCc
Q 039149 226 LDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTG 280 (536)
Q Consensus 226 L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 280 (536)
|++++|.+..+| ++.+++|++|++++| .++.+| ++++++|++|++.+|.
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNK 159 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCS
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCC
Confidence 666666555554 555566666666555 455543 4555556666655553
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.2e-22 Score=220.63 Aligned_cols=330 Identities=15% Similarity=0.184 Sum_probs=238.3
Q ss_pred ceEEEecCCCccc------------------Ccccc---ccccceEEEeecCCc-ccccCC-CCCCCcceEecccccchh
Q 039149 129 RNFLVCAGEGLKE------------------APDVK---RWENVRRLSLMQNQI-ETLSEV-PTCPHLLTLFLDFNENLN 185 (536)
Q Consensus 129 ~~~~~~~~~~~~~------------------~~~~~---~~~~l~~L~l~~~~~-~~l~~~-~~~~~Lr~L~l~~~~~l~ 185 (536)
-..+...+..+.. +|... .+.+++.|++.+|.+ ..+|.. ..+++|++|++++|..++
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 3556666666666 66533 688999999999874 445653 789999999999884255
Q ss_pred --cchhHHhcC-------CCcccEEEeeccccccccCcc--cccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCC
Q 039149 186 --MIADGFFQL-------MPSLKVLKMSNCVNLTLKLPL--GMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWT 254 (536)
Q Consensus 186 --~~~~~~~~~-------l~~Lr~L~L~~~~~i~~~lp~--~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~ 254 (536)
.+|.. ++. +++|++|+++++ .+. .+|. .++++.+|++|++++|.+..+| .++.+++|+.|++++|
T Consensus 530 g~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 530 AAQLKAD-WTRLADDEDTGPKIQIFYMGYN-NLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp HHHHHHH-HHHHHHCTTTTTTCCEEECCSS-CCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS
T ss_pred cccchHH-HHhhhhcccccCCccEEEeeCC-cCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC
Confidence 36765 444 459999999999 999 9999 8999999999999999999999 8999999999999998
Q ss_pred CCCCccchHHhhcCcc-CcEEEeccCccccccc--cccc------ccccCCc-----cccccccc--CccCCceEEEEec
Q 039149 255 FELNKIPRQLISNSSR-LRVLRMLGTGLLNFHQ--ASED------SVLFGGG-----EVLIQELL--GLKYLEVLELTLG 318 (536)
Q Consensus 255 ~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~--~~~~------~~~~~~~-----~~~~~~l~--~l~~L~~L~l~~~ 318 (536)
.+..+|.. +.++++ |++|++++|.+...+. +... +.+..+. +.....+. .+++|+.|+++.+
T Consensus 606 -~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 606 -QIEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp -CCSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred -ccccchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 77899987 899999 9999999998764321 0000 0011110 11111222 2347888888887
Q ss_pred CchhhHHHhcCccccccceeEeecccCCcceeccccc-------ccccccccceecccccccceeecccccccccccCCc
Q 039149 319 SYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATA-------FADLNHLNELYINKGFELEELKIDYTEIVRKRREPF 391 (536)
Q Consensus 319 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 391 (536)
....++.... ...++|+.|+++++. +..++.. . +.++++|+.|++++| .+..++.... . .
T Consensus 684 ~L~~lp~~~~--~~l~~L~~L~Ls~N~-L~~ip~~-~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~-------~-~ 750 (876)
T 4ecn_A 684 EIQKFPTELF--ATGSPISTIILSNNL-MTSIPEN-SLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR-------A-T 750 (876)
T ss_dssp CCCSCCHHHH--HTTCCCSEEECCSCC-CSCCCTT-SSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGS-------T-T
T ss_pred cCCccCHHHH--ccCCCCCEEECCCCc-CCccChH-HhccccccccccCCccEEECCCC-CCccchHHhh-------h-c
Confidence 7765543221 112389999999864 3344331 1 224459999999998 5666654332 0 1
Q ss_pred ccCCccEEEeecCCCCcCCc-ccccCCCccEEEEecCc------hhhhhhccCCcCCccccccCCCCCCccceecccccc
Q 039149 392 VFRSLHHVTIWRCAKLKDST-FLVFAPNLKSLVLRNCH------AMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLP 464 (536)
Q Consensus 392 ~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~------~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 464 (536)
.+++|+.|+|++| .+..+| .+..+++|+.|+|++++ ....+ +..+..+++|+.|+|+++
T Consensus 751 ~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i------------p~~l~~L~~L~~L~Ls~N- 816 (876)
T 4ecn_A 751 TLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW------------PTGITTCPSLIQLQIGSN- 816 (876)
T ss_dssp TCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCC------------CTTGGGCSSCCEEECCSS-
T ss_pred cCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccC------------hHHHhcCCCCCEEECCCC-
Confidence 6899999999999 677665 57899999999998854 22233 236778999999999998
Q ss_pred ccccccCCCcCCCccceEeeccCCCCCCCC
Q 039149 465 DLKSIHWKPLPFTHLKEMGVRACDQLEKLP 494 (536)
Q Consensus 465 ~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp 494 (536)
.+..+|... +++|+.|++++|+ +..+.
T Consensus 817 ~L~~Ip~~l--~~~L~~LdLs~N~-l~~i~ 843 (876)
T 4ecn_A 817 DIRKVDEKL--TPQLYILDIADNP-NISID 843 (876)
T ss_dssp CCCBCCSCC--CSSSCEEECCSCT-TCEEE
T ss_pred CCCccCHhh--cCCCCEEECCCCC-CCccC
Confidence 458888664 3799999999986 44443
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=8.3e-22 Score=217.06 Aligned_cols=151 Identities=18% Similarity=0.227 Sum_probs=128.0
Q ss_pred ceEEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecc
Q 039149 129 RNFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNC 206 (536)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 206 (536)
...+.+...++..+|. -..++++|++++|.+..+.. ...+++|++|++++|.....+++..|.++++|++|+|++|
T Consensus 6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 4677788888999997 45899999999999988754 3899999999999986677786666999999999999999
Q ss_pred ccccccCcccccCCCCCceEeeccCCCcc-cchh--ccCCCCCcEEeccCCCCCCcc-chHHhhcCccCcEEEeccCccc
Q 039149 207 VNLTLKLPLGMSKLGSLELLDVSHTGIRE-LPEE--LKLLVNLKCLTLRWTFELNKI-PRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 207 ~~i~~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~i~~l~~L~~L~l~~~~~~ 282 (536)
.+.+..|..++++.+|++|++++|.+.. +|.. ++++++|++|++++| .++.+ |...++++++|++|++++|.+.
T Consensus 84 -~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 84 -KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp -CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred -cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCC
Confidence 8883458899999999999999998875 5655 899999999999998 66655 3234899999999999998775
Q ss_pred c
Q 039149 283 N 283 (536)
Q Consensus 283 ~ 283 (536)
.
T Consensus 162 ~ 162 (844)
T 3j0a_A 162 L 162 (844)
T ss_dssp C
T ss_pred e
Confidence 4
No 30
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.8e-22 Score=197.18 Aligned_cols=240 Identities=22% Similarity=0.312 Sum_probs=172.7
Q ss_pred CCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcE
Q 039149 194 LMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRV 273 (536)
Q Consensus 194 ~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~ 273 (536)
...++++|+++++ .++ .+|..++++.+|++|++++|.+..+|..++++++|++|++++| .++.+|.. ++++++|++
T Consensus 79 ~~~~l~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESS-CCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCE
T ss_pred cccceeEEEccCC-Cch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCE
Confidence 4578999999999 899 9999999999999999999999899998999999999999998 77889886 899999999
Q ss_pred EEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceeccc
Q 039149 274 LRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDA 353 (536)
Q Consensus 274 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 353 (536)
|++++|.... .....+.. ..+.
T Consensus 155 L~L~~n~~~~---------------~~p~~~~~--------------------------------~~~~----------- 176 (328)
T 4fcg_A 155 LSIRACPELT---------------ELPEPLAS--------------------------------TDAS----------- 176 (328)
T ss_dssp EEEEEETTCC---------------CCCSCSEE--------------------------------EC-C-----------
T ss_pred EECCCCCCcc---------------ccChhHhh--------------------------------ccch-----------
Confidence 9999876553 11111111 0000
Q ss_pred ccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCCc-ccccCCCccEEEEecCchhhh
Q 039149 354 TAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDST-FLVFAPNLKSLVLRNCHAMEE 432 (536)
Q Consensus 354 ~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~ 432 (536)
..++.+++|++|+++++ .++.++... +.+++|+.|++++| .+..++ .++.+++|+.|++++|...+.
T Consensus 177 ~~~~~l~~L~~L~L~~n-~l~~lp~~l----------~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWT-GIRSLPASI----------ANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp CCEEESTTCCEEEEEEE-CCCCCCGGG----------GGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred hhhccCCCCCEEECcCC-CcCcchHhh----------cCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhh
Confidence 03455666666666665 344443222 15677777777777 455543 466778888888888776666
Q ss_pred hhccCCcCCccccccCCCCCCccceeccccccccccccCCCcCCCccceEeeccCCCCCCCCCCCccccCCceEEEehHh
Q 039149 433 IISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWKPLPFTHLKEMGVRACDQLEKLPLDSSSAKERKFVIRGEAD 512 (536)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~ 512 (536)
++. .+..+++|+.|++.+|..+..++.....+++|+.|++++|+.+..+|...... ..+..+..+..
T Consensus 245 ~p~------------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~ 311 (328)
T 4fcg_A 245 YPP------------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPH 311 (328)
T ss_dssp CCC------------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGG
T ss_pred hHH------------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHH
Confidence 554 56677888888888887777777777778888888888888888888776665 66777776666
Q ss_pred hhhccccC
Q 039149 513 WWNRLQWE 520 (536)
Q Consensus 513 ~~~~~~~~ 520 (536)
+.+.+.+.
T Consensus 312 ~~~~l~~~ 319 (328)
T 4fcg_A 312 LQAQLDQH 319 (328)
T ss_dssp GSCC----
T ss_pred HHHHHhhh
Confidence 66555543
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.9e-22 Score=214.94 Aligned_cols=330 Identities=13% Similarity=0.178 Sum_probs=239.2
Q ss_pred ceEEEecCCCccc------------------Cccc-c--ccccceEEEeecCCcc-cccCC-CCCCCcceEecccccchh
Q 039149 129 RNFLVCAGEGLKE------------------APDV-K--RWENVRRLSLMQNQIE-TLSEV-PTCPHLLTLFLDFNENLN 185 (536)
Q Consensus 129 ~~~~~~~~~~~~~------------------~~~~-~--~~~~l~~L~l~~~~~~-~l~~~-~~~~~Lr~L~l~~~~~l~ 185 (536)
-+.+...+..+.. +|.. . .+.+++.|++.+|.+. .+|.. ..+++|++|++++|..++
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 3556666666666 6643 3 5889999999998754 45554 789999999999885355
Q ss_pred --cchhHHhcCC------CcccEEEeeccccccccCcc--cccCCCCCceEeeccCCCc-ccchhccCCCCCcEEeccCC
Q 039149 186 --MIADGFFQLM------PSLKVLKMSNCVNLTLKLPL--GMSKLGSLELLDVSHTGIR-ELPEELKLLVNLKCLTLRWT 254 (536)
Q Consensus 186 --~~~~~~~~~l------~~Lr~L~L~~~~~i~~~lp~--~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~ 254 (536)
.+|.. ++.+ ++|++|+++++ .++ .+|. .++++.+|++|++++|.+. .+| .++.+++|++|++++|
T Consensus 288 ~~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 288 GEQLKDD-WQALADAPVGEKIQIIYIGYN-NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp HHHHHHH-HHHHHHSGGGGTCCEEECCSS-CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred cccchHH-HHhhhccccCCCCCEEECCCC-cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence 47776 5555 99999999999 999 9998 8999999999999999998 999 8999999999999998
Q ss_pred CCCCccchHHhhcCcc-CcEEEeccCcccccccc--ccc------ccccCC--ccccccccc-------CccCCceEEEE
Q 039149 255 FELNKIPRQLISNSSR-LRVLRMLGTGLLNFHQA--SED------SVLFGG--GEVLIQELL-------GLKYLEVLELT 316 (536)
Q Consensus 255 ~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~--~~~------~~~~~~--~~~~~~~l~-------~l~~L~~L~l~ 316 (536)
.++.+|.. ++++++ |++|++++|.....+.. ... ..+..+ ....+..+. .+++|+.|+++
T Consensus 364 -~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 364 -QITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp -EEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred -ccccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence 77789987 899999 99999999887643211 000 001111 112223344 56788899988
Q ss_pred ecCchhhHHHhcCccccccceeEeecccCCcceeccccccc-------ccccccceecccccccceeecccccccccccC
Q 039149 317 LGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFA-------DLNHLNELYINKGFELEELKIDYTEIVRKRRE 389 (536)
Q Consensus 317 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 389 (536)
.+....++.... ...++|+.|+++++.- ..++.. .+. ++++|+.|+++++ .+..++.....
T Consensus 442 ~N~l~~lp~~~~--~~l~~L~~L~Ls~N~l-~~i~~~-~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~------- 509 (636)
T 4eco_A 442 NNQISKFPKELF--STGSPLSSINLMGNML-TEIPKN-SLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRA------- 509 (636)
T ss_dssp SSCCCSCCTHHH--HTTCCCSEEECCSSCC-SBCCSS-SSEETTEECTTGGGCCEEECCSS-CCCBCCGGGST-------
T ss_pred CCccCcCCHHHH--ccCCCCCEEECCCCCC-CCcCHH-HhccccccccccCCccEEECcCC-cCCccChhhhh-------
Confidence 877665543211 1123899999998654 344331 222 3349999999998 55566543320
Q ss_pred CcccCCccEEEeecCCCCcCCc-ccccCCCccEEEEecCc------hhhhhhccCCcCCccccccCCCCCCccceecccc
Q 039149 390 PFVFRSLHHVTIWRCAKLKDST-FLVFAPNLKSLVLRNCH------AMEEIISVGKFSEVPEMMRHMSPFENLQRLHVED 462 (536)
Q Consensus 390 ~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~------~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 462 (536)
..+++|+.|+++++ .++.+| .+..+++|+.|+++++. ..+.+| ..+..+++|+.|++++
T Consensus 510 -~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p------------~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 510 -TTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP------------EGITLCPSLTQLQIGS 575 (636)
T ss_dssp -TTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC------------TTGGGCSSCCEEECCS
T ss_pred -ccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccCh------------HHHhcCCCCCEEECCC
Confidence 06899999999999 676664 57899999999997654 223333 3677899999999999
Q ss_pred ccccccccCCCcCCCccceEeeccCCCCCCCC
Q 039149 463 LPDLKSIHWKPLPFTHLKEMGVRACDQLEKLP 494 (536)
Q Consensus 463 ~~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp 494 (536)
+ .+..++... +++|+.|++++|+ +.+++
T Consensus 576 N-~l~~ip~~~--~~~L~~L~Ls~N~-l~~~~ 603 (636)
T 4eco_A 576 N-DIRKVNEKI--TPNISVLDIKDNP-NISID 603 (636)
T ss_dssp S-CCCBCCSCC--CTTCCEEECCSCT-TCEEE
T ss_pred C-cCCccCHhH--hCcCCEEECcCCC-Ccccc
Confidence 8 458888654 3899999999984 44444
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=6.7e-23 Score=223.48 Aligned_cols=334 Identities=18% Similarity=0.163 Sum_probs=205.2
Q ss_pred eEEEecCCCccc-CccccccccceEEEeecCCccc-ccC-CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecc
Q 039149 130 NFLVCAGEGLKE-APDVKRWENVRRLSLMQNQIET-LSE-VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNC 206 (536)
Q Consensus 130 ~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~-l~~-~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 206 (536)
..+...+..+.. +|.+..+.++++|++.+|.+.. ++. ...+++|++|++++|.-...+|. ..+++|++|++++|
T Consensus 203 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~L~~n 279 (768)
T 3rgz_A 203 EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAEN 279 (768)
T ss_dssp CEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC---CCCTTCCEEECCSS
T ss_pred CEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc---cccCCCCEEECcCC
Confidence 344444444433 4556677899999999998874 332 37889999999998743334443 27888999999998
Q ss_pred ccccccCcccccCC-CCCceEeeccCCCc-ccchhccCCCCCcEEeccCCCCCC-ccchHHhhcCccCcEEEeccCcccc
Q 039149 207 VNLTLKLPLGMSKL-GSLELLDVSHTGIR-ELPEELKLLVNLKCLTLRWTFELN-KIPRQLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 207 ~~i~~~lp~~i~~L-~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~~ 283 (536)
.+.+.+|..++.+ .+|++|++++|.+. .+|..++.+++|++|++++| .+. .+|...++++++|++|++++|....
T Consensus 280 -~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 280 -KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp -EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred -ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence 7876788888775 89999999998776 77888889999999999988 454 7887668889999999998887653
Q ss_pred cccccc-------c-ccccCC--cccccccccC--ccCCceEEEEecCch-hhHHHhcCccccccceeEeecccCCccee
Q 039149 284 FHQASE-------D-SVLFGG--GEVLIQELLG--LKYLEVLELTLGSYH-ALQILLSSNKLKSCIRSLFLQLAGDATSI 350 (536)
Q Consensus 284 ~~~~~~-------~-~~~~~~--~~~~~~~l~~--l~~L~~L~l~~~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 350 (536)
..+..+ . ..+..+ ....+..+.. +++|+.|.++.+... .++.. ....++|+.|+++++.-....
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT---LSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG---GGGCTTCCEEECCSSEEESCC
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH---HhcCCCCCEEECcCCcccCcc
Confidence 100000 0 000000 0011112221 334444444433322 11111 111124555555544322222
Q ss_pred cccccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCc-CC-cccccCCCccEEEEecCc
Q 039149 351 VDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLK-DS-TFLVFAPNLKSLVLRNCH 428 (536)
Q Consensus 351 ~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l-~~l~~l~~L~~L~l~~c~ 428 (536)
+. .+..+++|+.|++++|.....++... +.+++|+.|++++| .+. .+ ..++.+++|+.|++++|.
T Consensus 435 p~--~l~~l~~L~~L~L~~n~l~~~~p~~~----------~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 435 PS--SLGSLSKLRDLKLWLNMLEGEIPQEL----------MYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNR 501 (768)
T ss_dssp CG--GGGGCTTCCEEECCSSCCCSCCCGGG----------GGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred cH--HHhcCCCCCEEECCCCcccCcCCHHH----------cCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCCc
Confidence 21 45555555555555553222222211 15677777777777 444 23 346677778888877776
Q ss_pred hhhhhhccCCcCCccccccCCCCCCccceeccccccccccccCCCcCCCccceEeeccCCCCCCCCCC
Q 039149 429 AMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWKPLPFTHLKEMGVRACDQLEKLPLD 496 (536)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~ 496 (536)
....+|. .+..+++|+.|+++++.-...++.....+++|+.|++++|+--..+|..
T Consensus 502 l~~~~p~------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 502 LTGEIPK------------WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CCSCCCG------------GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred cCCcCCh------------HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 5444443 5567888888888888555567767777888888888887655566654
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=3.3e-22 Score=204.12 Aligned_cols=294 Identities=17% Similarity=0.192 Sum_probs=220.5
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNL 209 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i 209 (536)
..+...+..+..+|.+..+.+++.|++.+|.++.++ ...+++|++|++++| .++.++ ++.+++|++|+++++ .+
T Consensus 45 ~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N-~l 118 (457)
T 3bz5_A 45 TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTN-KL 118 (457)
T ss_dssp CEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSS-CC
T ss_pred CEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCC-cC
Confidence 556667777777888888899999999999999886 788999999999987 677774 789999999999999 99
Q ss_pred cccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccc
Q 039149 210 TLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASE 289 (536)
Q Consensus 210 ~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 289 (536)
+ .+| ++.+++|++|++++|.++.+| ++.+++|++|++++|..+..++ ++.+++|++|++++|....
T Consensus 119 ~-~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~------ 184 (457)
T 3bz5_A 119 T-KLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE------ 184 (457)
T ss_dssp S-CCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC------
T ss_pred C-eec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce------
Confidence 9 776 899999999999999999885 8899999999999997777773 7899999999999997753
Q ss_pred cccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceeccc
Q 039149 290 DSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINK 369 (536)
Q Consensus 290 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 369 (536)
+. +..+++|+.|.++.+....++ ....++|+.|+++++. ++.+ .+..+++|+.|++++
T Consensus 185 -----------l~-l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~-l~~i----p~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 185 -----------LD-VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNK-LTEI----DVTPLTQLTYFDCSV 242 (457)
T ss_dssp -----------CC-CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSC-CSCC----CCTTCTTCSEEECCS
T ss_pred -----------ec-cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCc-cccc----CccccCCCCEEEeeC
Confidence 22 677888999998877766552 1223488999998864 3333 367888999999988
Q ss_pred ccccceeecccccccccccCCcccCCc----------cEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCc
Q 039149 370 GFELEELKIDYTEIVRKRREPFVFRSL----------HHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKF 439 (536)
Q Consensus 370 ~~~l~~l~~~~~~~~~~~~~~~~~~~L----------~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~ 439 (536)
+ .++.++.. .+++| +.|++++|..+..++ .+.+++|+.|++++|..++.++...
T Consensus 243 N-~l~~~~~~------------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~-- 306 (457)
T 3bz5_A 243 N-PLTELDVS------------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQA-- 306 (457)
T ss_dssp S-CCSCCCCT------------TCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTT--
T ss_pred C-cCCCcCHH------------HCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCC--
Confidence 7 45444321 34444 455555554343343 4678999999999998777775411
Q ss_pred CCccccccCCCCCCccceeccccccccccccCCCcCCCccceEeecc
Q 039149 440 SEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWKPLPFTHLKEMGVRA 486 (536)
Q Consensus 440 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~L~~L~i~~ 486 (536)
..+..+ .+..+++|+.|+++++ .++.++ ...+++|+.|++++
T Consensus 307 ~~L~~L--~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 307 AGITEL--DLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVN 348 (457)
T ss_dssp CCCSCC--CCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCS
T ss_pred CcceEe--chhhcccCCEEECCCC-cccccc--cccCCcCcEEECCC
Confidence 111111 2445567777777765 455553 55678888888765
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.2e-21 Score=206.24 Aligned_cols=127 Identities=19% Similarity=0.283 Sum_probs=110.7
Q ss_pred ccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccC-cccccCCCCCceEe
Q 039149 149 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLGSLELLD 227 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~~L~~L~ 227 (536)
...+++++.+++++.+|... .++|++|++++| .++.++...+.++++|++|+++++ .++ .+ |..++++++|++|+
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHN-RIR-SLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp --CCEEECTTSCCCSCCTTS-CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSC-CCC-EECTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCC-CccccChhhhccCCCccEEECCCC-CCC-cCCHHHhCCCCCCCEEE
Confidence 34589999999999988753 389999999987 788887666999999999999999 998 55 77899999999999
Q ss_pred eccCCCcccchhccCCCCCcEEeccCCCCCCccc--hHHhhcCccCcEEEeccCcccc
Q 039149 228 VSHTGIRELPEELKLLVNLKCLTLRWTFELNKIP--RQLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 228 L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~i~~l~~L~~L~l~~~~~~~ 283 (536)
+++|.++.+|.. .+++|++|++++| .++.+| .. ++++++|++|+++++....
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSBCCT
T ss_pred CCCCcCCccCcc--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCcccc
Confidence 999999999987 8999999999998 777765 54 9999999999999987754
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=6.2e-22 Score=213.58 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=126.8
Q ss_pred ceEEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecc
Q 039149 129 RNFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNC 206 (536)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 206 (536)
...+.+.+..+..+|.... .++++|++.+|.+..++. ...+++|++|++++| .+..+++..+.++++|++|+++++
T Consensus 6 ~~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CCeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCC
Confidence 3567777778888886444 789999999999998876 378999999999977 677776666899999999999999
Q ss_pred ccccccCcc-cccCCCCCceEeeccCCCcccc-hhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccc
Q 039149 207 VNLTLKLPL-GMSKLGSLELLDVSHTGIRELP-EELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 207 ~~i~~~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 283 (536)
.++ .+|. .++++.+|++|++++|.+..+| ..++++++|++|++++| .+..++.+.++++++|++|++++|....
T Consensus 84 -~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 84 -ELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp -CCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred -ccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccc
Confidence 999 8886 5999999999999999998887 56999999999999998 6666655458899999999999987654
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=6.2e-22 Score=206.65 Aligned_cols=125 Identities=20% Similarity=0.199 Sum_probs=109.8
Q ss_pred eEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccC
Q 039149 152 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHT 231 (536)
Q Consensus 152 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~ 231 (536)
+.++++++.++.+|.... ++|++|++++| .++.++...+.++++|++|+++++ .+++..|..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQN-YISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCC-cccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence 678999999999887543 89999999987 677887666999999999999999 898334788999999999999999
Q ss_pred CCcccchhccCCCCCcEEeccCCCCCCc--cchHHhhcCccCcEEEeccCcccc
Q 039149 232 GIRELPEELKLLVNLKCLTLRWTFELNK--IPRQLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 232 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~ 283 (536)
.++.+|.. .+++|++|++++| .++. +|.. ++++++|++|++++|....
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESSCCG
T ss_pred ceeecCcc--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCcccch
Confidence 99999987 8999999999998 6665 5665 9999999999999988754
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=8.7e-22 Score=192.34 Aligned_cols=220 Identities=23% Similarity=0.289 Sum_probs=129.7
Q ss_pred CCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEE
Q 039149 170 CPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCL 249 (536)
Q Consensus 170 ~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 249 (536)
.++++.|+++++ .++.+|.. +.++++|++|+++++ .+. .+|..++++.+|++|++++|.+..+|..++++++|++|
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQ-AFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSC-GGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCC-CchhcChh-hhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 355666666654 55566655 555777777777777 677 77777777777777777777777777777777777777
Q ss_pred eccCCCCCCccchHHhhc---------CccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCc
Q 039149 250 TLRWTFELNKIPRQLISN---------SSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 320 (536)
Q Consensus 250 ~l~~~~~l~~lp~~~i~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 320 (536)
++++|..+..+|.. ++. +++|++|++++|.... ....+..+++|+.|+++.+..
T Consensus 156 ~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------------lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 156 SIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRS----------------LPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCC----------------CCGGGGGCTTCCEEEEESSCC
T ss_pred ECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCc----------------chHhhcCCCCCCEEEccCCCC
Confidence 77776566666654 433 6666666666665432 233455555555555554332
Q ss_pred hhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEE
Q 039149 321 HALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVT 400 (536)
Q Consensus 321 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~ 400 (536)
..+ +. .+..+++|++|++++|.....++.... .+++|+.|+
T Consensus 219 ~~l---------------------------~~--~l~~l~~L~~L~Ls~n~~~~~~p~~~~----------~l~~L~~L~ 259 (328)
T 4fcg_A 219 SAL---------------------------GP--AIHHLPKLEELDLRGCTALRNYPPIFG----------GRAPLKRLI 259 (328)
T ss_dssp CCC---------------------------CG--GGGGCTTCCEEECTTCTTCCBCCCCTT----------CCCCCCEEE
T ss_pred CcC---------------------------ch--hhccCCCCCEEECcCCcchhhhHHHhc----------CCCCCCEEE
Confidence 211 11 344555566666665544443332221 455666666
Q ss_pred eecCCCCcCCc-ccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccc
Q 039149 401 IWRCAKLKDST-FLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVE 461 (536)
Q Consensus 401 l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 461 (536)
+++|.....+| .++.+++|+.|+|++|+.++.+|. .+..+++|+.+.+.
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~------------~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS------------LIAQLPANCIILVP 309 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG------------GGGGSCTTCEEECC
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH------------HHhhccCceEEeCC
Confidence 66664444443 355666666666666666555554 45556666666555
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=2.5e-21 Score=203.54 Aligned_cols=171 Identities=16% Similarity=0.127 Sum_probs=114.7
Q ss_pred cCccCCceEEEEecCchhh-HHHhcCccccccceeEeecccCCcceecc-cccccccccccceecccccccceeeccccc
Q 039149 305 LGLKYLEVLELTLGSYHAL-QILLSSNKLKSCIRSLFLQLAGDATSIVD-ATAFADLNHLNELYINKGFELEELKIDYTE 382 (536)
Q Consensus 305 ~~l~~L~~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~ 382 (536)
..+++|+.|+++.+..... ..........++|+.|+++++. ++.++. ...+..+++|++|++++| .++.++....
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~- 407 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQ- 407 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCC-
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccCChhhc-
Confidence 4688999999988776542 2212222233489999999864 333321 114788999999999998 5665553321
Q ss_pred ccccccCCcccCCccEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccc
Q 039149 383 IVRKRREPFVFRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVED 462 (536)
Q Consensus 383 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 462 (536)
.+++|+.|++++| .++.++.. ..++|+.|++++|. ++.+ ...+++|+.|++++
T Consensus 408 ---------~~~~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~Ls~N~-l~~~---------------~~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 408 ---------WPEKMRFLNLSST-GIRVVKTC-IPQTLEVLDVSNNN-LDSF---------------SLFLPRLQELYISR 460 (549)
T ss_dssp ---------CCTTCCEEECTTS-CCSCCCTT-SCTTCSEEECCSSC-CSCC---------------CCCCTTCCEEECCS
T ss_pred ---------ccccccEEECCCC-Ccccccch-hcCCceEEECCCCC-hhhh---------------cccCChhcEEECCC
Confidence 6788999999998 56665432 23689999998873 2222 24678899999988
Q ss_pred ccccccccCCCcCCCccceEeeccCCCCCCCCCCCccccCCceEEE
Q 039149 463 LPDLKSIHWKPLPFTHLKEMGVRACDQLEKLPLDSSSAKERKFVIR 508 (536)
Q Consensus 463 ~~~L~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~ 508 (536)
+ .++.++. ...+++|+.|+++++ +++.+|.+.-.....++.+.
T Consensus 461 N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 461 N-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIW 503 (549)
T ss_dssp S-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEE
T ss_pred C-ccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEE
Confidence 7 6777775 346788999999886 77777665322225555554
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=7.2e-21 Score=205.25 Aligned_cols=175 Identities=19% Similarity=0.192 Sum_probs=138.3
Q ss_pred eEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccC
Q 039149 152 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHT 231 (536)
Q Consensus 152 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~ 231 (536)
+.++.+++.+..+|... .+++++|++++| .++.++...+.++++|++|+++++ .+.+..|..++++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCC
Confidence 46778888888888653 379999999987 788888777999999999999999 888344777899999999999999
Q ss_pred CCcccch-hccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCC
Q 039149 232 GIRELPE-ELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYL 310 (536)
Q Consensus 232 ~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 310 (536)
.+..+|. .++++++|++|++++| .++.+|+..++++++|++|++++|.... .....+..+++|
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------------~~~~~~~~l~~L 147 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSS---------------TKLGTQVQLENL 147 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSC---------------CCCCSSSCCTTC
T ss_pred ccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccc---------------cCchhhcccccC
Confidence 9999997 5999999999999998 7888886559999999999999998764 344556778888
Q ss_pred ceEEEEecCchhhHHHhcCccccccceeEeecccC
Q 039149 311 EVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAG 345 (536)
Q Consensus 311 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 345 (536)
+.|+++.+....+..........++|+.|+++++.
T Consensus 148 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 88888876554432211000011377888887753
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.3e-20 Score=201.47 Aligned_cols=148 Identities=24% Similarity=0.297 Sum_probs=127.1
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCV 207 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 207 (536)
..+.+.+.++..+|...+ .++++|++++|.++.++.. ..+++|++|+|++| .++.++++.|.++++|++|+|++|
T Consensus 34 ~~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N- 110 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN- 110 (635)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-
T ss_pred CEEECCCCCcCccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-
Confidence 345677778888886543 6899999999999998764 88999999999987 788898887999999999999999
Q ss_pred cccccCcc-cccCCCCCceEeeccCCCcccchh-ccCCCCCcEEeccCCCCCCc--cchHHhhcCccCcEEEeccCcccc
Q 039149 208 NLTLKLPL-GMSKLGSLELLDVSHTGIRELPEE-LKLLVNLKCLTLRWTFELNK--IPRQLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 208 ~i~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~ 283 (536)
.++ .+|. .+++|.+|++|++++|+++.+|.. ++++++|++|++++| .++. +|.. ++.+++|++|++++|.+..
T Consensus 111 ~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 111 PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred cCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCccccc
Confidence 999 8875 578999999999999999999864 899999999999998 6654 4554 8899999999999987654
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=2.4e-21 Score=188.08 Aligned_cols=128 Identities=21% Similarity=0.283 Sum_probs=58.6
Q ss_pred cceEEEeecCCccc---ccCC-CCCCCcceEeccc-ccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCc
Q 039149 150 NVRRLSLMQNQIET---LSEV-PTCPHLLTLFLDF-NENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLE 224 (536)
Q Consensus 150 ~l~~L~l~~~~~~~---l~~~-~~~~~Lr~L~l~~-~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~ 224 (536)
+++.|++.++.+.. +|.. ..+++|++|++++ +.-...+|.. +.++++|++|+++++ .+.+.+|..++++++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCC
Confidence 45555555554442 2222 4444555555543 2111233333 444555555555554 44434444455555555
Q ss_pred eEeeccCCCc-ccchhccCCCCCcEEeccCCCCCC-ccchHHhhcCc-cCcEEEeccCcc
Q 039149 225 LLDVSHTGIR-ELPEELKLLVNLKCLTLRWTFELN-KIPRQLISNSS-RLRVLRMLGTGL 281 (536)
Q Consensus 225 ~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~l~-~L~~L~l~~~~~ 281 (536)
+|++++|.+. .+|..++.+++|++|++++| .++ .+|.. +++++ +|++|++++|..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEE
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCee
Confidence 5555555444 44444555555555555544 333 44443 44444 455555544443
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=1.6e-20 Score=206.78 Aligned_cols=196 Identities=16% Similarity=0.207 Sum_probs=143.0
Q ss_pred eEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccC-cccccCCCCCceEeecc
Q 039149 152 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLGSLELLDVSH 230 (536)
Q Consensus 152 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~~L~~L~L~~ 230 (536)
+..+.++++++.+|. -.++|++|++++| .++.++...+.++++|++|+++++ ...+.+ |..++++.+|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCC
Confidence 567777888899988 6789999999987 677776555999999999999999 443366 77899999999999999
Q ss_pred CCCccc-chhccCCCCCcEEeccCCCCCCc-cch-HHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCc
Q 039149 231 TGIREL-PEELKLLVNLKCLTLRWTFELNK-IPR-QLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGL 307 (536)
Q Consensus 231 ~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~-lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 307 (536)
|.+..+ |..++++++|++|++++| .+.. +|. ..++++++|++|++++|..... .....++.+
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~--------------~~~~~~~~L 147 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSL--------------YLHPSFGKL 147 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCC--------------CCCGGGGTC
T ss_pred CcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCccccc--------------ccchhHhhC
Confidence 999877 788999999999999998 5654 443 3478999999999999987641 223568889
Q ss_pred cCCceEEEEecCchhh--HHHhcCccccccceeEeecccCCcceeccccccccccc------ccceecccc
Q 039149 308 KYLEVLELTLGSYHAL--QILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNH------LNELYINKG 370 (536)
Q Consensus 308 ~~L~~L~l~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~------L~~L~l~~~ 370 (536)
++|+.|+++.+..... ..+.... .++|+.|+++++.-....+. .++.+++ |+.|+++++
T Consensus 148 ~~L~~L~Ls~N~i~~~~~~~l~~l~--~~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 148 NSLKSIDFSSNQIFLVCEHELEPLQ--GKTLSFFSLAANSLYSRVSV--DWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp SSCCEEEEESSCCCCCCSGGGHHHH--HCSSCCCEECCSBSCCCCCC--CCCSSSCTTTTCCBSEEBCSSC
T ss_pred CCCCEEECCCCcCCeeCHHHccccc--CCccceEECCCCcccccccc--chhhcCCccccCceeEEecCCC
Confidence 9999999987765332 1111110 02677777766543332221 2233322 666666655
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=6.9e-21 Score=184.80 Aligned_cols=130 Identities=21% Similarity=0.306 Sum_probs=110.1
Q ss_pred CCcceEecccccchh---cchhHHhcCCCcccEEEeec-cccccccCcccccCCCCCceEeeccCCCc-ccchhccCCCC
Q 039149 171 PHLLTLFLDFNENLN---MIADGFFQLMPSLKVLKMSN-CVNLTLKLPLGMSKLGSLELLDVSHTGIR-ELPEELKLLVN 245 (536)
Q Consensus 171 ~~Lr~L~l~~~~~l~---~~~~~~~~~l~~Lr~L~L~~-~~~i~~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~ 245 (536)
.+++.|+++++ .+. .+|.. +.++++|++|++++ + .+.+.+|..++++++|++|++++|.+. .+|..++++++
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~-l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSS-LANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGG-GGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCC-CccCCcccChh-HhCCCCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 68999999987 555 56766 89999999999995 7 777689999999999999999999998 88999999999
Q ss_pred CcEEeccCCCCCC-ccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCcc-CCceEEEEecCc
Q 039149 246 LKCLTLRWTFELN-KIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLK-YLEVLELTLGSY 320 (536)
Q Consensus 246 L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~ 320 (536)
|++|++++| .+. .+|.. ++++++|++|++++|.+.. ..+..+..++ +|+.|+++.+..
T Consensus 127 L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N~l~~---------------~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 127 LVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNRISG---------------AIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp CCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCEE---------------ECCGGGGCCCTTCCEEECCSSEE
T ss_pred CCEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCCcccC---------------cCCHHHhhhhhcCcEEECcCCee
Confidence 999999998 555 77876 9999999999999998764 3556677776 788887765543
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=1.8e-20 Score=185.29 Aligned_cols=265 Identities=18% Similarity=0.222 Sum_probs=172.0
Q ss_pred EEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccC-cccccCCCCCceEeeccC
Q 039149 153 RLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLGSLELLDVSHT 231 (536)
Q Consensus 153 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~~L~~L~L~~~ 231 (536)
..+..++.++.+|.. -.++|++|++++| .++.++...+.++++|++|+++++ .++ .+ |..++++.+|++|++++|
T Consensus 35 ~c~~~~~~l~~iP~~-~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 35 ICKGSSGSLNSIPSG-LTEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN-GIN-TIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EEECCSTTCSSCCTT-CCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCC-EECTTTTTTCTTCCEEECCSS
T ss_pred EeeCCCCCccccccc-ccccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC-ccC-ccCHhhcCCCCCCCEEECCCC
Confidence 356666777777664 2357888888876 677777655788888888888888 787 54 456888888888888888
Q ss_pred CCcccchh-ccCCCCCcEEeccCCCCCCccch-HHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccC
Q 039149 232 GIRELPEE-LKLLVNLKCLTLRWTFELNKIPR-QLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKY 309 (536)
Q Consensus 232 ~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 309 (536)
.+..+|.. ++.+++|++|++++| .++.+|. ..+.++++|++|++++|.... ......+..+++
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~--------------~~~~~~~~~l~~ 175 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT--------------KIQRKDFAGLTF 175 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC--------------EECTTTTTTCCE
T ss_pred cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc--------------ccCHHHccCCCC
Confidence 88888776 788888888888887 7777776 447788888888888774322 022344555666
Q ss_pred CceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccC
Q 039149 310 LEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRRE 389 (536)
Q Consensus 310 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 389 (536)
|+.|+++.+..... .+. .+..+++|++|+++++. +..++.....
T Consensus 176 L~~L~l~~n~l~~~--------------------------~~~--~l~~l~~L~~L~l~~n~-l~~~~~~~~~------- 219 (353)
T 2z80_A 176 LEELEIDASDLQSY--------------------------EPK--SLKSIQNVSHLILHMKQ-HILLLEIFVD------- 219 (353)
T ss_dssp EEEEEEEETTCCEE--------------------------CTT--TTTTCSEEEEEEEECSC-STTHHHHHHH-------
T ss_pred CCEEECCCCCcCcc--------------------------CHH--HHhccccCCeecCCCCc-cccchhhhhh-------
Confidence 66666654432211 111 45566667777776653 3333322211
Q ss_pred CcccCCccEEEeecCCCCcCCc-----ccccCCCccEEEEecCchh----hhhhccCCcCCccccccCCCCCCccceecc
Q 039149 390 PFVFRSLHHVTIWRCAKLKDST-----FLVFAPNLKSLVLRNCHAM----EEIISVGKFSEVPEMMRHMSPFENLQRLHV 460 (536)
Q Consensus 390 ~~~~~~L~~L~l~~c~~l~~l~-----~l~~l~~L~~L~l~~c~~l----~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 460 (536)
.+++|+.|+++++ .++..+ .....+.++.++++++..- ..++. .+..+++|+.|++
T Consensus 220 --~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~------------~l~~l~~L~~L~L 284 (353)
T 2z80_A 220 --VTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK------------LLNQISGLLELEF 284 (353)
T ss_dssp --HTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH------------HHHTCTTCCEEEC
T ss_pred --hcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHH------------HHhcccCCCEEEC
Confidence 4667777777776 444432 1224556677777665422 22322 4456788888888
Q ss_pred ccccccccccCCC-cCCCccceEeeccCC
Q 039149 461 EDLPDLKSIHWKP-LPFTHLKEMGVRACD 488 (536)
Q Consensus 461 ~~~~~L~~~~~~~-~~~~~L~~L~i~~C~ 488 (536)
+++ .++.++... ..+++|+.|++++++
T Consensus 285 s~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 285 SRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 877 666777654 567888888888774
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=186.39 Aligned_cols=194 Identities=23% Similarity=0.274 Sum_probs=157.5
Q ss_pred EEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecccc
Q 039149 131 FLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVN 208 (536)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~ 208 (536)
.+...+..+..+|.... .+++.|++.++.++.++. ...+++|++|++++| .++.++...+.++++|++|+++++ .
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-Y 111 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-c
Confidence 45566667788876433 689999999999999876 488999999999987 777777666899999999999999 9
Q ss_pred ccccCccc-ccCCCCCceEeeccCCCcccch--hccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccc
Q 039149 209 LTLKLPLG-MSKLGSLELLDVSHTGIRELPE--ELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFH 285 (536)
Q Consensus 209 i~~~lp~~-i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 285 (536)
++ .+|.. ++++++|++|++++|.+..+|. .++.+++|++|++++|..+..++...++++++|++|++++|....
T Consensus 112 l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-- 188 (353)
T 2z80_A 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-- 188 (353)
T ss_dssp CS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--
T ss_pred CC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc--
Confidence 99 88876 8899999999999999999987 689999999999999866888876568999999999999998764
Q ss_pred cccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccC
Q 039149 286 QASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAG 345 (536)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 345 (536)
.....+..+++|+.|+++.+....++.... ...++|+.|+++++.
T Consensus 189 -------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 189 -------------YEPKSLKSIQNVSHLILHMKQHILLLEIFV--DVTSSVECLELRDTD 233 (353)
T ss_dssp -------------ECTTTTTTCSEEEEEEEECSCSTTHHHHHH--HHTTTEEEEEEESCB
T ss_pred -------------cCHHHHhccccCCeecCCCCccccchhhhh--hhcccccEEECCCCc
Confidence 345677888899999998877655543211 112367777777653
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.7e-20 Score=181.44 Aligned_cols=262 Identities=16% Similarity=0.210 Sum_probs=194.6
Q ss_pred CcceEecccccchhcchhHHhcCCCcccEEEeeccccccccC-cccccCCCCCceEeeccCCCccc-chhccCCCCCcEE
Q 039149 172 HLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLGSLELLDVSHTGIREL-PEELKLLVNLKCL 249 (536)
Q Consensus 172 ~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L 249 (536)
++++++++++ .++.+|..+ .++|++|+++++ .+. .+ |..++++.+|++|++++|.+..+ |..++.+++|++|
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~---~~~l~~L~l~~n-~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI---SPDTTLLDLQNN-DIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC---CTTCCEEECCSS-CCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCC-CccccCCCC---CCCCeEEECCCC-cCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 7899999976 788888753 478999999999 898 66 55799999999999999999977 6789999999999
Q ss_pred eccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcC
Q 039149 250 TLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSS 329 (536)
Q Consensus 250 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~ 329 (536)
++++| .++.+|.. +. ++|++|+++++.... .....+..+++|+.|+++.+...........
T Consensus 108 ~L~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 168 (332)
T 2ft3_A 108 YISKN-HLVEIPPN-LP--SSLVELRIHDNRIRK---------------VPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168 (332)
T ss_dssp ECCSS-CCCSCCSS-CC--TTCCEEECCSSCCCC---------------CCSGGGSSCSSCCEEECCSCCCBGGGSCTTS
T ss_pred ECCCC-cCCccCcc-cc--ccCCEEECCCCccCc---------------cCHhHhCCCccCCEEECCCCccccCCCCccc
Confidence 99998 88899986 44 899999999998764 2334578889999999987766543222222
Q ss_pred ccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcC
Q 039149 330 NKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKD 409 (536)
Q Consensus 330 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 409 (536)
.... +|+.|+++++. ++.++. .+ .++|++|+++++ .++.++.... ..+++|+.|+++++ .+..
T Consensus 169 ~~~l-~L~~L~l~~n~-l~~l~~--~~--~~~L~~L~l~~n-~i~~~~~~~l---------~~l~~L~~L~L~~N-~l~~ 231 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAK-LTGIPK--DL--PETLNELHLDHN-KIQAIELEDL---------LRYSKLYRLGLGHN-QIRM 231 (332)
T ss_dssp SCSC-CCSCCBCCSSB-CSSCCS--SS--CSSCSCCBCCSS-CCCCCCTTSS---------TTCTTCSCCBCCSS-CCCC
T ss_pred ccCC-ccCEEECcCCC-CCccCc--cc--cCCCCEEECCCC-cCCccCHHHh---------cCCCCCCEEECCCC-cCCc
Confidence 2222 77888887754 333322 22 268999999887 4444443222 16788999999988 6666
Q ss_pred Cc--ccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccccccccCCCc-------CCCccc
Q 039149 410 ST--FLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWKPL-------PFTHLK 480 (536)
Q Consensus 410 l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~-------~~~~L~ 480 (536)
++ .+..+++|+.|++++| .+..+|. .+..+++|+.|+++++ .++.++.... .+++|+
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N-~l~~lp~------------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNN-KLSRVPA------------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSS-CCCBCCT------------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBS
T ss_pred CChhHhhCCCCCCEEECCCC-cCeecCh------------hhhcCccCCEEECCCC-CCCccChhHcccccccccccccc
Confidence 54 4778899999999887 4445543 5677889999999886 5666654211 157788
Q ss_pred eEeeccCCC
Q 039149 481 EMGVRACDQ 489 (536)
Q Consensus 481 ~L~i~~C~~ 489 (536)
.|.+.++|-
T Consensus 298 ~L~l~~N~~ 306 (332)
T 2ft3_A 298 GISLFNNPV 306 (332)
T ss_dssp EEECCSSSS
T ss_pred ceEeecCcc
Confidence 999988764
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=8.8e-20 Score=178.65 Aligned_cols=245 Identities=18% Similarity=0.234 Sum_probs=156.8
Q ss_pred CCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcc-cccCCCCCceEeeccCCCccc-chhccCCCCCcE
Q 039149 171 PHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPL-GMSKLGSLELLDVSHTGIREL-PEELKLLVNLKC 248 (536)
Q Consensus 171 ~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~ 248 (536)
.++++++++++ .++.+|..+ .++|++|+++++ .++ .+|. .++++.+|++|++++|.+..+ |..++.+++|++
T Consensus 31 c~l~~l~~~~~-~l~~lp~~~---~~~l~~L~L~~n-~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 31 CHLRVVQCSDL-GLEKVPKDL---PPDTALLDLQNN-KIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp EETTEEECTTS-CCCSCCCSC---CTTCCEEECCSS-CCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCCeEEEecCC-CccccCccC---CCCCeEEECCCC-cCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 37899999865 677888652 368999999999 899 7665 799999999999999999877 788999999999
Q ss_pred EeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhc
Q 039149 249 LTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLS 328 (536)
Q Consensus 249 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~ 328 (536)
|++++| .++.+|.. +. ++|++|++++|.... .....+..+++|+.|+++.+..........
T Consensus 105 L~Ls~n-~l~~l~~~-~~--~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 165 (330)
T 1xku_A 105 LYLSKN-QLKELPEK-MP--KTLQELRVHENEITK---------------VRKSVFNGLNQMIVVELGTNPLKSSGIENG 165 (330)
T ss_dssp EECCSS-CCSBCCSS-CC--TTCCEEECCSSCCCB---------------BCHHHHTTCTTCCEEECCSSCCCGGGBCTT
T ss_pred EECCCC-cCCccChh-hc--ccccEEECCCCcccc---------------cCHhHhcCCccccEEECCCCcCCccCcChh
Confidence 999998 78899976 43 799999999987764 344457788888888887665432211111
Q ss_pred CccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCc
Q 039149 329 SNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLK 408 (536)
Q Consensus 329 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 408 (536)
.....++|+.|+++++. +..++. .+ .++|++|+++++ .++.+...... .+++|+.|+++++ .++
T Consensus 166 ~~~~l~~L~~L~l~~n~-l~~l~~--~~--~~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~Ls~n-~l~ 229 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTN-ITTIPQ--GL--PPSLTELHLDGN-KITKVDAASLK---------GLNNLAKLGLSFN-SIS 229 (330)
T ss_dssp GGGGCTTCCEEECCSSC-CCSCCS--SC--CTTCSEEECTTS-CCCEECTGGGT---------TCTTCCEEECCSS-CCC
T ss_pred hccCCCCcCEEECCCCc-cccCCc--cc--cccCCEEECCCC-cCCccCHHHhc---------CCCCCCEEECCCC-cCc
Confidence 11112255666665543 222211 11 155666666655 33333222211 4556666666665 344
Q ss_pred CCc--ccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccccccccccc
Q 039149 409 DST--FLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIH 470 (536)
Q Consensus 409 ~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~ 470 (536)
.++ .+..+++|+.|++++| .+..+|. .+..+++|++|++.++ .++.++
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N-~l~~lp~------------~l~~l~~L~~L~l~~N-~i~~~~ 279 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNN-KLVKVPG------------GLADHKYIQVVYLHNN-NISAIG 279 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSS-CCSSCCT------------TTTTCSSCCEEECCSS-CCCCCC
T ss_pred eeChhhccCCCCCCEEECCCC-cCccCCh------------hhccCCCcCEEECCCC-cCCccC
Confidence 332 3555666666666655 2333332 3445566666666654 344433
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=3.1e-20 Score=179.88 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=73.2
Q ss_pred EEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccC---cccccCCCCCceEeec
Q 039149 153 RLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL---PLGMSKLGSLELLDVS 229 (536)
Q Consensus 153 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l---p~~i~~L~~L~~L~L~ 229 (536)
.++..++.++.+|.. -.++|++|++++| .++.+|..++.++++|++|+++++ .+. .+ |..+..+.+|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN-GLS-FKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCC-EEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCC-ccC-cccCcccccccccccCEEECC
Confidence 344555555555542 2246666666654 455666555566666666666666 554 33 4455556666666666
Q ss_pred cCCCcccchhccCCCCCcEEeccCCCCCCccch-HHhhcCccCcEEEeccCccc
Q 039149 230 HTGIRELPEELKLLVNLKCLTLRWTFELNKIPR-QLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 230 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 282 (536)
+|.+..+|..+..+++|++|++++| .++.++. ..+.++++|++|++++|...
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred CCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCC
Confidence 6666666666666666666666665 4555543 23566666666666666543
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=2.1e-19 Score=183.23 Aligned_cols=238 Identities=24% Similarity=0.299 Sum_probs=147.4
Q ss_pred EEEecCCCcccCccccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeecccc
Q 039149 131 FLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVN 208 (536)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~ 208 (536)
.+.+.+..+..+|.... .+++.|++.+|.+..++.. ..+++|++|++++| .+..++...|.++++|++|+|+++ .
T Consensus 47 ~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~ 123 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-R 123 (440)
T ss_dssp EEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS-C
T ss_pred EEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC-c
Confidence 34455555666654332 5666677776666665432 56666777777655 555555555666677777777766 6
Q ss_pred ccccCcc-cccCCCCCceEeeccCCCcccch-hccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccccccc
Q 039149 209 LTLKLPL-GMSKLGSLELLDVSHTGIRELPE-ELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQ 286 (536)
Q Consensus 209 i~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 286 (536)
++ .+|. .+..+.+|++|++++|.+..+|. .+..+++|++|++++|..+..++.+.+.++++|++|++++|....
T Consensus 124 l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--- 199 (440)
T 3zyj_A 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--- 199 (440)
T ss_dssp CS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS---
T ss_pred CC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc---
Confidence 66 5554 46666677777777766666654 466666777777766656666666556666677777776665432
Q ss_pred ccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceeccccccccccccccee
Q 039149 287 ASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELY 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~ 366 (536)
+..+..++ +|+.|+++++. +..+... .+..+++|++|+
T Consensus 200 --------------~~~~~~l~--------------------------~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~ 237 (440)
T 3zyj_A 200 --------------IPNLTPLI--------------------------KLDELDLSGNH-LSAIRPG-SFQGLMHLQKLW 237 (440)
T ss_dssp --------------CCCCTTCS--------------------------SCCEEECTTSC-CCEECTT-TTTTCTTCCEEE
T ss_pred --------------ccccCCCc--------------------------ccCEEECCCCc-cCccChh-hhccCccCCEEE
Confidence 22334444 44555555442 2222221 677788888888
Q ss_pred cccccccceeecccccccccccCCcccCCccEEEeecCCCCcCCcc--cccCCCccEEEEecCc
Q 039149 367 INKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDSTF--LVFAPNLKSLVLRNCH 428 (536)
Q Consensus 367 l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~ 428 (536)
++++ .++.+...... .+++|+.|+|+++ .++.++. +..+++|+.|++++++
T Consensus 238 L~~n-~l~~~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 238 MIQS-QIQVIERNAFD---------NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTC-CCCEECTTSST---------TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCC-ceeEEChhhhc---------CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 8877 55555433322 6788888888888 6766553 5678888888887754
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.3e-19 Score=185.32 Aligned_cols=237 Identities=23% Similarity=0.273 Sum_probs=133.2
Q ss_pred EEecCCCcccCccccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccc
Q 039149 132 LVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNL 209 (536)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i 209 (536)
+.+.+..+..+|.... .+++.|++.+|.+..++.. ..+++|++|++++| .++.++...|.++++|++|+|+++ .+
T Consensus 59 v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l 135 (452)
T 3zyi_A 59 VVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WL 135 (452)
T ss_dssp EECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred EEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-cC
Confidence 4444445555553222 4556666666655554322 45556666666654 444454444555666666666665 55
Q ss_pred cccCccc-ccCCCCCceEeeccCCCcccch-hccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccc
Q 039149 210 TLKLPLG-MSKLGSLELLDVSHTGIRELPE-ELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQA 287 (536)
Q Consensus 210 ~~~lp~~-i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 287 (536)
+ .+|.. ++.+.+|++|++++|.+..+|. .+.++++|+.|++++|..+..+|.+.+.++++|++|++++|....
T Consensus 136 ~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---- 210 (452)
T 3zyi_A 136 T-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---- 210 (452)
T ss_dssp S-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS----
T ss_pred C-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc----
Confidence 5 44433 5556666666666665555554 355566666666665555555555445556666666665554432
Q ss_pred cccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceec
Q 039149 288 SEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYI 367 (536)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l 367 (536)
+..+..++ +|+.|+++++.- ..+... .+..+++|++|++
T Consensus 211 -------------~~~~~~l~--------------------------~L~~L~Ls~N~l-~~~~~~-~~~~l~~L~~L~L 249 (452)
T 3zyi_A 211 -------------MPNLTPLV--------------------------GLEELEMSGNHF-PEIRPG-SFHGLSSLKKLWV 249 (452)
T ss_dssp -------------CCCCTTCT--------------------------TCCEEECTTSCC-SEECGG-GGTTCTTCCEEEC
T ss_pred -------------cccccccc--------------------------cccEEECcCCcC-cccCcc-cccCccCCCEEEe
Confidence 12233334 455555555432 222111 6777788888888
Q ss_pred ccccccceeecccccccccccCCcccCCccEEEeecCCCCcCCcc--cccCCCccEEEEecCc
Q 039149 368 NKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDSTF--LVFAPNLKSLVLRNCH 428 (536)
Q Consensus 368 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~ 428 (536)
+++ .+..+...... .+++|+.|+|+++ .++.++. +..+++|+.|++++++
T Consensus 250 ~~n-~l~~~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 250 MNS-QVSLIERNAFD---------GLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTS-CCCEECTTTTT---------TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCC-cCceECHHHhc---------CCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 877 45554433222 6778888888887 6666543 5677888888887754
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.3e-19 Score=188.68 Aligned_cols=253 Identities=22% Similarity=0.231 Sum_probs=144.8
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNL 209 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i 209 (536)
..+.+.+..+..+|.... .+++.|++.+|.++.+|. .+++|++|++++| .++.+|. .+++|++|++++| .+
T Consensus 43 ~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N-~l 113 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSN-PL 113 (622)
T ss_dssp CEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEECSC-CC
T ss_pred cEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEECcCC-cC
Confidence 455556666666654333 566777777776666665 5566777777755 4555554 4566777777776 66
Q ss_pred cccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccc
Q 039149 210 TLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASE 289 (536)
Q Consensus 210 ~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 289 (536)
+ .+|. .+.+|++|++++|++..+|.. +++|++|++++| .++.+|. .+.+|+.|++.+|.+..
T Consensus 114 ~-~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~------ 175 (622)
T 3g06_A 114 T-HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTS------ 175 (622)
T ss_dssp C-CCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC------
T ss_pred C-CCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCC------
Confidence 6 6665 456667777777766666653 366677777766 5666654 23566666666665542
Q ss_pred cccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceeccc
Q 039149 290 DSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINK 369 (536)
Q Consensus 290 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 369 (536)
+. ..+++|+.|+++.+....++. ..++|+.|.++++. +..++ ..+++|++|++++
T Consensus 176 -----------l~--~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~-l~~l~-----~~~~~L~~L~Ls~ 230 (622)
T 3g06_A 176 -----------LP--MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNR-LTSLP-----ALPSGLKELIVSG 230 (622)
T ss_dssp -----------CC--CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSC-CSSCC-----CCCTTCCEEECCS
T ss_pred -----------Cc--ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCc-ccccC-----CCCCCCCEEEccC
Confidence 11 334666666666555443322 12356666665542 22221 1235566666665
Q ss_pred ccccceeecccccccccccCCcccCCccEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCCccccccCC
Q 039149 370 GFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHM 449 (536)
Q Consensus 370 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 449 (536)
+ .++.++ ..+++|+.|++++| .++.+|. .+++|+.|++++| .+..+|. .+
T Consensus 231 N-~L~~lp-------------~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~------------~l 280 (622)
T 3g06_A 231 N-RLTSLP-------------VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPE------------SL 280 (622)
T ss_dssp S-CCSCCC-------------CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSCCG------------GG
T ss_pred C-ccCcCC-------------CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcCCH------------HH
Confidence 5 343333 04566666666666 5555554 4566666666665 3334433 34
Q ss_pred CCCCccceecccccc
Q 039149 450 SPFENLQRLHVEDLP 464 (536)
Q Consensus 450 ~~~~~L~~L~l~~~~ 464 (536)
..+++|+.|+|.+++
T Consensus 281 ~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 281 IHLSSETTVNLEGNP 295 (622)
T ss_dssp GGSCTTCEEECCSCC
T ss_pred hhccccCEEEecCCC
Confidence 556666666666653
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=3.5e-19 Score=190.38 Aligned_cols=136 Identities=26% Similarity=0.291 Sum_probs=114.2
Q ss_pred eEEEecCCCcccCc--cccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeec
Q 039149 130 NFLVCAGEGLKEAP--DVKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSN 205 (536)
Q Consensus 130 ~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~ 205 (536)
+.+....+.+..++ .+..+.+++.|++.+|.++.+++. ..+++|++|+|++| .++.+|.+.|.++++|++|++++
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTT
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCC
Confidence 55667777777776 367788999999999999998764 78999999999987 78899988899999999999999
Q ss_pred cccccccCcc-cccCCCCCceEeeccCCCcc--cchhccCCCCCcEEeccCCCCCCccchHHhhcCc
Q 039149 206 CVNLTLKLPL-GMSKLGSLELLDVSHTGIRE--LPEELKLLVNLKCLTLRWTFELNKIPRQLISNSS 269 (536)
Q Consensus 206 ~~~i~~~lp~-~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~ 269 (536)
+ .++ .+|. .++++++|++|++++|.+.. +|..++.+++|++|++++| .++.++.+.+..+.
T Consensus 134 N-~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 134 T-NLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH 197 (635)
T ss_dssp S-CCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH
T ss_pred C-cCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchh
Confidence 9 999 7775 58999999999999998874 5788999999999999998 67666543344433
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=6.8e-19 Score=179.41 Aligned_cols=211 Identities=22% Similarity=0.265 Sum_probs=121.3
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNL 209 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i 209 (536)
..+...+..+..+|.. ..+++.|++.+|.+..+|.. +++|++|++++| .++.++.. .++|++|+++++ .+
T Consensus 74 ~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n-~l~~l~~~----~~~L~~L~L~~n-~l 143 (454)
T 1jl5_A 74 HELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNN-NLKALSDL----PPLLEYLGVSNN-QL 143 (454)
T ss_dssp SEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSS-CCSCCCSC----CTTCCEEECCSS-CC
T ss_pred CEEEecCCccccCCCC--cCCCCEEEccCCcCCccccc--cCCCcEEECCCC-ccCcccCC----CCCCCEEECcCC-CC
Confidence 4455555555555543 25677777777777666542 366777777655 45444331 156777777777 66
Q ss_pred cccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccccccc--c
Q 039149 210 TLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQ--A 287 (536)
Q Consensus 210 ~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~--~ 287 (536)
+ .+| +++++.+|++|++++|.++.+|..+ .+|++|++++| .++.+|. ++++++|++|++.+|.....+. .
T Consensus 144 ~-~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~ 215 (454)
T 1jl5_A 144 E-KLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLPDLPL 215 (454)
T ss_dssp S-SCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred C-CCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCCCCcC
Confidence 6 566 4667777777777777666666443 36677777766 5666663 6667777777776665543210 0
Q ss_pred ccc-ccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceeccccccccccccccee
Q 039149 288 SED-SVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELY 366 (536)
Q Consensus 288 ~~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~ 366 (536)
.+. ..+..+....+..+..+++|+.|+++.+....++. ...+|+.|+++++. +..++. .+++|++|+
T Consensus 216 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~ 283 (454)
T 1jl5_A 216 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNY-LTDLPE-----LPQSLTFLD 283 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEE
T ss_pred cccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCc-ccccCc-----ccCcCCEEE
Confidence 010 01111111123346677788888887666554332 12377777777654 222221 135677777
Q ss_pred cccc
Q 039149 367 INKG 370 (536)
Q Consensus 367 l~~~ 370 (536)
++++
T Consensus 284 ls~N 287 (454)
T 1jl5_A 284 VSEN 287 (454)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 7766
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=1.5e-20 Score=182.82 Aligned_cols=266 Identities=15% Similarity=0.166 Sum_probs=149.4
Q ss_pred CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCc
Q 039149 168 PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLK 247 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~ 247 (536)
..+++|++|++++| .++.++...+..+++|++|+++++ .+. ..++ ++.+.+|++|++++|.+..+| ..++|+
T Consensus 31 ~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLY-ETLD-LESLSTLRTLDLNNNYVQELL----VGPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS-CCE-EEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred ccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC-cCC-cchh-hhhcCCCCEEECcCCcccccc----CCCCcC
Confidence 45667777887766 566666555777788888888777 776 5544 777778888888877776665 236777
Q ss_pred EEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhH--H
Q 039149 248 CLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ--I 325 (536)
Q Consensus 248 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~ 325 (536)
+|++++| .++.++.. .+++|++|++++|.... .....+..+++|+.|+++.+....+. .
T Consensus 103 ~L~l~~n-~l~~~~~~---~~~~L~~L~l~~N~l~~---------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 103 TLHAANN-NISRVSCS---RGQGKKNIYLANNKITM---------------LRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEECCSS-CCSEEEEC---CCSSCEEEECCSSCCCS---------------GGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred EEECCCC-ccCCcCcc---ccCCCCEEECCCCCCCC---------------ccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 8888776 66666643 46777777777776653 22334555666666666555443321 1
Q ss_pred HhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCC
Q 039149 326 LLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCA 405 (536)
Q Consensus 326 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 405 (536)
+.. ..++|+.|+++++. ++.++ ....+++|++|+++++ .++.++..+. .+++|+.|+++++
T Consensus 164 ~~~---~l~~L~~L~L~~N~-l~~~~---~~~~l~~L~~L~Ls~N-~l~~l~~~~~----------~l~~L~~L~L~~N- 224 (317)
T 3o53_A 164 LAA---SSDTLEHLNLQYNF-IYDVK---GQVVFAKLKTLDLSSN-KLAFMGPEFQ----------SAAGVTWISLRNN- 224 (317)
T ss_dssp GGG---GTTTCCEEECTTSC-CCEEE---CCCCCTTCCEEECCSS-CCCEECGGGG----------GGTTCSEEECTTS-
T ss_pred Hhh---ccCcCCEEECCCCc-Ccccc---cccccccCCEEECCCC-cCCcchhhhc----------ccCcccEEECcCC-
Confidence 110 11255566665543 22221 2233566666666665 4444443221 4566666666666
Q ss_pred CCcCCc-ccccCCCccEEEEecCchh-hhhhccCCcCCccccccCCCCCCccceeccccccccccccCCCcCCCccceEe
Q 039149 406 KLKDST-FLVFAPNLKSLVLRNCHAM-EEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWKPLPFTHLKEMG 483 (536)
Q Consensus 406 ~l~~l~-~l~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~L~~L~ 483 (536)
.++.++ .+..+++|+.|++++++.. ..++. ....+++|+.|++.++..++.........+.+....
T Consensus 225 ~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~------------~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~ 292 (317)
T 3o53_A 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD------------FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292 (317)
T ss_dssp CCCEECTTCCCCTTCCEEECTTCCCBHHHHHH------------HHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEET
T ss_pred cccchhhHhhcCCCCCEEEccCCCccCcCHHH------------HHhccccceEEECCCchhccCCchhccCCCceeccc
Confidence 444433 2455666666666665443 22222 334456666666665555554443333333333333
Q ss_pred eccCCCCC
Q 039149 484 VRACDQLE 491 (536)
Q Consensus 484 i~~C~~L~ 491 (536)
-..|..+.
T Consensus 293 ~~cc~~l~ 300 (317)
T 3o53_A 293 AYCCEDLP 300 (317)
T ss_dssp TEEEBCCT
T ss_pred ceeeccCC
Confidence 33444443
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=3.3e-19 Score=182.41 Aligned_cols=218 Identities=23% Similarity=0.288 Sum_probs=167.9
Q ss_pred ceEEEecCCCcccCc--cccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEee
Q 039149 129 RNFLVCAGEGLKEAP--DVKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMS 204 (536)
Q Consensus 129 ~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~ 204 (536)
-..+...+..+..++ .+..+.+++.|++.+|.+..++.. ..+++|++|++++| .++.++...+..+++|++|+++
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECC
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECC
Confidence 355666666666553 456778999999999999987643 78999999999987 7888888879999999999999
Q ss_pred ccccccccCcc-cccCCCCCceEeeccC-CCcccch-hccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcc
Q 039149 205 NCVNLTLKLPL-GMSKLGSLELLDVSHT-GIRELPE-ELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGL 281 (536)
Q Consensus 205 ~~~~i~~~lp~-~i~~L~~L~~L~L~~~-~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 281 (536)
++ .+. .+|. .+.++.+|++|++++| .+..+|. .+..+++|++|++++| .++.+|. +..+++|++|++++|.+
T Consensus 156 ~N-~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 156 NN-PIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN--LTPLVGLEELEMSGNHF 230 (452)
T ss_dssp SC-CCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC--CTTCTTCCEEECTTSCC
T ss_pred CC-Ccc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc--ccccccccEEECcCCcC
Confidence 99 898 7765 6889999999999996 7888876 4889999999999998 8899986 89999999999999987
Q ss_pred cccccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceeccccccccccc
Q 039149 282 LNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNH 361 (536)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 361 (536)
.. .....+..+++|+.|.++.+... .+... .+..+++
T Consensus 231 ~~---------------~~~~~~~~l~~L~~L~L~~n~l~---------------------------~~~~~-~~~~l~~ 267 (452)
T 3zyi_A 231 PE---------------IRPGSFHGLSSLKKLWVMNSQVS---------------------------LIERN-AFDGLAS 267 (452)
T ss_dssp SE---------------ECGGGGTTCTTCCEEECTTSCCC---------------------------EECTT-TTTTCTT
T ss_pred cc---------------cCcccccCccCCCEEEeCCCcCc---------------------------eECHH-HhcCCCC
Confidence 65 34556777777777766544322 11111 4566777
Q ss_pred ccceecccccccceeecccccccccccCCcccCCccEEEeecCC
Q 039149 362 LNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCA 405 (536)
Q Consensus 362 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 405 (536)
|+.|+++++ .++.++..... .+++|+.|+|++++
T Consensus 268 L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 268 LVELNLAHN-NLSSLPHDLFT---------PLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECCSS-CCSCCCTTSST---------TCTTCCEEECCSSC
T ss_pred CCEEECCCC-cCCccChHHhc---------cccCCCEEEccCCC
Confidence 777777776 45555433322 56777777777763
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=3.6e-19 Score=181.47 Aligned_cols=243 Identities=18% Similarity=0.266 Sum_probs=185.4
Q ss_pred cceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCc-ccccCCCCCceEee
Q 039149 150 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLP-LGMSKLGSLELLDV 228 (536)
Q Consensus 150 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp-~~i~~L~~L~~L~L 228 (536)
..+.++..+..++.+|... .++++.|++++| .++.++...|.++++|++|+|+++ .+. .++ ..+.++.+|++|+|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI-STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN-HIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC-CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSS-CCC-EECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCC-cCC-ccChhhccCCccCCEEEC
Confidence 3467778888888888653 378999999977 777777666899999999999999 888 554 67889999999999
Q ss_pred ccCCCcccch-hccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCc
Q 039149 229 SHTGIRELPE-ELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGL 307 (536)
Q Consensus 229 ~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 307 (536)
++|.++.+|. .+..+++|++|++++| .++.+|...+.++++|++|++.++.... ......+..+
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~l 184 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLS--------------YISEGAFEGL 184 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTTC
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcc--------------eeCcchhhcc
Confidence 9999998886 4889999999999998 7888888778999999999999865543 0122345556
Q ss_pred cCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccc
Q 039149 308 KYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKR 387 (536)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 387 (536)
++|+.|+++.+. ++.+ +.+..+++|++|+++++ .+..+......
T Consensus 185 ~~L~~L~L~~n~---------------------------l~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~----- 228 (440)
T 3zyj_A 185 SNLRYLNLAMCN---------------------------LREI---PNLTPLIKLDELDLSGN-HLSAIRPGSFQ----- 228 (440)
T ss_dssp SSCCEEECTTSC---------------------------CSSC---CCCTTCSSCCEEECTTS-CCCEECTTTTT-----
T ss_pred cccCeecCCCCc---------------------------Cccc---cccCCCcccCEEECCCC-ccCccChhhhc-----
Confidence 666665554332 1222 15677889999999998 56666543332
Q ss_pred cCCcccCCccEEEeecCCCCcCCc--ccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccccc
Q 039149 388 REPFVFRSLHHVTIWRCAKLKDST--FLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLP 464 (536)
Q Consensus 388 ~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 464 (536)
.+++|+.|+++++ .++.++ .+..+++|+.|+|+++ .++.++. ..+..+++|+.|+|.+.+
T Consensus 229 ----~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 ----GLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPH-----------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ----TCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCT-----------TTTSSCTTCCEEECCSSC
T ss_pred ----cCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccCh-----------hHhccccCCCEEEcCCCC
Confidence 7899999999998 676643 4778999999999997 4455543 245678999999998754
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=4.9e-19 Score=180.46 Aligned_cols=262 Identities=23% Similarity=0.263 Sum_probs=139.6
Q ss_pred cceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeec
Q 039149 150 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVS 229 (536)
Q Consensus 150 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~ 229 (536)
+++.|++.+|.++.+|....+++|++|++++| .++.+|.. ..+|++|+++++ .++ .+| +++++++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~lp~~----~~~L~~L~L~~n-~l~-~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPDL----PPSLEFIAAGNN-QLE-ELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSS-CCS-SCC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCC-cCcccCCC----cccccEEECcCC-cCC-cCc-cccCCCCCCEEECC
Confidence 44444444444444444444444444444443 33333321 234455555554 444 444 35555555555555
Q ss_pred cCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccC
Q 039149 230 HTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKY 309 (536)
Q Consensus 230 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 309 (536)
+|.+..+|... .+|++|++++| .++.+|. ++.+++|++|++++|.... +.. .+++
T Consensus 204 ~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~-----------------l~~--~~~~ 258 (454)
T 1jl5_A 204 NNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKT-----------------LPD--LPPS 258 (454)
T ss_dssp SSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSS-----------------CCS--CCTT
T ss_pred CCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCc-----------------ccc--cccc
Confidence 55555544322 35556666655 5556663 6666667777776665432 111 2378
Q ss_pred CceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccC
Q 039149 310 LEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRRE 389 (536)
Q Consensus 310 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 389 (536)
|+.|+++.+....++.. .++|+.|+++++. ++.++. -.++|+.|+++++ .+..++
T Consensus 259 L~~L~l~~N~l~~l~~~------~~~L~~L~ls~N~-l~~l~~-----~~~~L~~L~l~~N-~l~~i~------------ 313 (454)
T 1jl5_A 259 LEALNVRDNYLTDLPEL------PQSLTFLDVSENI-FSGLSE-----LPPNLYYLNASSN-EIRSLC------------ 313 (454)
T ss_dssp CCEEECCSSCCSCCCCC------CTTCCEEECCSSC-CSEESC-----CCTTCCEEECCSS-CCSEEC------------
T ss_pred cCEEECCCCcccccCcc------cCcCCEEECcCCc-cCcccC-----cCCcCCEEECcCC-cCCccc------------
Confidence 88898887766554322 2488999998764 333321 1268889998877 444432
Q ss_pred CcccCCccEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccccccccc-
Q 039149 390 PFVFRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKS- 468 (536)
Q Consensus 390 ~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~- 468 (536)
..+++|+.|+++++ .++.++.. +++|+.|++++| .++.++ . .+++|++|+++++. +..
T Consensus 314 -~~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N-~l~~lp-------------~--~l~~L~~L~L~~N~-l~~l 372 (454)
T 1jl5_A 314 -DLPPSLEELNVSNN-KLIELPAL--PPRLERLIASFN-HLAEVP-------------E--LPQNLKQLHVEYNP-LREF 372 (454)
T ss_dssp -CCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSCCC-------------C--CCTTCCEEECCSSC-CSSC
T ss_pred -CCcCcCCEEECCCC-cccccccc--CCcCCEEECCCC-cccccc-------------c--hhhhccEEECCCCC-CCcC
Confidence 03358888888887 66666543 688888888886 344442 1 46788888888763 333
Q ss_pred --ccCCCcCC-------------CccceEeeccCCCCC
Q 039149 469 --IHWKPLPF-------------THLKEMGVRACDQLE 491 (536)
Q Consensus 469 --~~~~~~~~-------------~~L~~L~i~~C~~L~ 491 (536)
+|.....+ ++|+.|++++++ ++
T Consensus 373 ~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~ 409 (454)
T 1jl5_A 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LR 409 (454)
T ss_dssp CCCCTTCCEEECCC------------------------
T ss_pred CCChHHHHhhhhcccccccccccCcCCEEECCCCc-CC
Confidence 44333333 788999998864 44
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1e-18 Score=169.16 Aligned_cols=240 Identities=23% Similarity=0.274 Sum_probs=173.0
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcc---hhHHhcCCCcccEEEee
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMI---ADGFFQLMPSLKVLKMS 204 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~---~~~~~~~l~~Lr~L~L~ 204 (536)
..+.+.+..+..+|.... .++++|++.++.++.++.. ..+++|++|++++| .++.+ +.. +..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECC
Confidence 345666677777776433 6899999999999998874 78999999999987 55544 444 6679999999999
Q ss_pred ccccccccCcccccCCCCCceEeeccCCCcccch--hccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccc
Q 039149 205 NCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPE--ELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 205 ~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
++ .+. .+|..+..+++|++|++++|.+..++. .+..+++|++|++++| .+..++...+.++++|++|++++|...
T Consensus 87 ~n-~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 87 FN-GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp SC-SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CC-ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccc
Confidence 99 999 899999999999999999999998875 6899999999999998 666555555889999999999998764
Q ss_pred ccccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccc
Q 039149 283 NFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHL 362 (536)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L 362 (536)
. ......+..+++|+.|+++.+.. ...... .+..+++|
T Consensus 164 ~--------------~~~~~~~~~l~~L~~L~Ls~n~l---------------------------~~~~~~-~~~~l~~L 201 (306)
T 2z66_A 164 E--------------NFLPDIFTELRNLTFLDLSQCQL---------------------------EQLSPT-AFNSLSSL 201 (306)
T ss_dssp G--------------GEECSCCTTCTTCCEEECTTSCC---------------------------CEECTT-TTTTCTTC
T ss_pred c--------------ccchhHHhhCcCCCEEECCCCCc---------------------------CCcCHH-HhcCCCCC
Confidence 2 12334455566565555543321 122111 55667777
Q ss_pred cceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCC--cccccCC-CccEEEEecCc
Q 039149 363 NELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDS--TFLVFAP-NLKSLVLRNCH 428 (536)
Q Consensus 363 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~~l~~l~-~L~~L~l~~c~ 428 (536)
++|+++++ .+..++..... .+++|+.|+++++ .+... ..+..++ +|+.|++++++
T Consensus 202 ~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 202 QVLNMSHN-NFFSLDTFPYK---------CLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CEEECTTS-CCSBCCSGGGT---------TCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CEEECCCC-ccCccChhhcc---------CcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence 77777776 34443322211 5677777777777 44442 2345553 77777777754
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=1.6e-18 Score=182.32 Aligned_cols=256 Identities=20% Similarity=0.200 Sum_probs=207.0
Q ss_pred ccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEee
Q 039149 149 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDV 228 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L 228 (536)
.+++.|++.++.++.+|.... ++|++|++++| .++.+|. .+++|++|+|++| .++ .+|. .+.+|++|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N-~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGN-QLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSC-CCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCC-cCC-cCCC---CCCCCCEEEC
Confidence 368999999999999887543 89999999987 7888876 5799999999999 899 8987 7899999999
Q ss_pred ccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCcc
Q 039149 229 SHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLK 308 (536)
Q Consensus 229 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 308 (536)
++|.+..+|. .+.+|+.|++++| .++.+|.. +++|++|++++|.+.. ... .+.
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~----------------l~~---~~~ 161 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLAS----------------LPA---LPS 161 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSC----------------CCC---CCT
T ss_pred cCCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCC----------------cCC---ccC
Confidence 9999999987 6789999999998 78999873 4899999999997653 111 346
Q ss_pred CCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeeccccccccccc
Q 039149 309 YLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRR 388 (536)
Q Consensus 309 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 388 (536)
+|+.|.++.+....++ ...++|+.|+++++. +..++. .+++|+.|++++| .+..++.
T Consensus 162 ~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~-l~~l~~-----~~~~L~~L~L~~N-~l~~l~~---------- 218 (622)
T 3g06_A 162 ELCKLWAYNNQLTSLP------MLPSGLQELSVSDNQ-LASLPT-----LPSELYKLWAYNN-RLTSLPA---------- 218 (622)
T ss_dssp TCCEEECCSSCCSCCC------CCCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSS-CCSSCCC----------
T ss_pred CCCEEECCCCCCCCCc------ccCCCCcEEECCCCC-CCCCCC-----ccchhhEEECcCC-cccccCC----------
Confidence 7888888877766654 223589999998864 333322 3478999999987 4544431
Q ss_pred CCcccCCccEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccccccccc
Q 039149 389 EPFVFRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKS 468 (536)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 468 (536)
.+++|+.|++++| .++.++ ..+++|+.|++++| .++.++. .+++|+.|+++++ .++.
T Consensus 219 ---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~---------------~~~~L~~L~Ls~N-~L~~ 275 (622)
T 3g06_A 219 ---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLPM---------------LPSGLLSLSVYRN-QLTR 275 (622)
T ss_dssp ---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC---------------CCTTCCEEECCSS-CCCS
T ss_pred ---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCCc---------------ccccCcEEeCCCC-CCCc
Confidence 5689999999999 788877 67899999999997 4555531 5789999999998 7888
Q ss_pred ccCCCcCCCccceEeeccCC
Q 039149 469 IHWKPLPFTHLKEMGVRACD 488 (536)
Q Consensus 469 ~~~~~~~~~~L~~L~i~~C~ 488 (536)
++.....+++|+.|++.+++
T Consensus 276 lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 276 LPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCGGGGGSCTTCEEECCSCC
T ss_pred CCHHHhhccccCEEEecCCC
Confidence 88778889999999999975
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=1.7e-18 Score=165.77 Aligned_cols=219 Identities=19% Similarity=0.219 Sum_probs=148.2
Q ss_pred eEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccC-cccccCCCCCceEeecc
Q 039149 152 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLGSLELLDVSH 230 (536)
Q Consensus 152 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~~L~~L~L~~ 230 (536)
+.++..++.++.+|.. -.++|++|+++++ .++.++...+..+++|++|+++++ .++ .+ |..++.+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n-~l~-~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLA-RIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCC-EECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC-ccc-eeCHhhcCCccCCCEEeCCC
Confidence 5566666667666653 3467888888866 677777655788888888888888 777 44 67788888888888888
Q ss_pred CC-Cccc-chhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCcc
Q 039149 231 TG-IREL-PEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLK 308 (536)
Q Consensus 231 ~~-i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 308 (536)
|. +..+ |..+..+++|++|++++| .++.++...+.++++|++|++++|.... .....+..++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~ 153 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQA---------------LPDDTFRDLG 153 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCT
T ss_pred CCCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccc---------------cCHhHhccCC
Confidence 85 7777 566788888888888887 6666655557788888888888876653 2223355556
Q ss_pred CCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeeccccccccccc
Q 039149 309 YLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRR 388 (536)
Q Consensus 309 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 388 (536)
+|+.|+++.+.. +.++.. .+..+++|++|+++++ .+..+......
T Consensus 154 ~L~~L~l~~n~l---------------------------~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~------ 198 (285)
T 1ozn_A 154 NLTHLFLHGNRI---------------------------SSVPER-AFRGLHSLDRLLLHQN-RVAHVHPHAFR------ 198 (285)
T ss_dssp TCCEEECCSSCC---------------------------CEECTT-TTTTCTTCCEEECCSS-CCCEECTTTTT------
T ss_pred CccEEECCCCcc---------------------------cccCHH-HhcCccccCEEECCCC-cccccCHhHcc------
Confidence 666555543322 122211 4566777888888777 34444322221
Q ss_pred CCcccCCccEEEeecCCCCcCCcc--cccCCCccEEEEecCch
Q 039149 389 EPFVFRSLHHVTIWRCAKLKDSTF--LVFAPNLKSLVLRNCHA 429 (536)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~~ 429 (536)
.+++|+.|+++++ .++.++. +..+++|+.|++++++.
T Consensus 199 ---~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 199 ---DLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ---TCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ---CcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 6678888888887 5666543 66788888888877653
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.4e-18 Score=168.89 Aligned_cols=266 Identities=17% Similarity=0.106 Sum_probs=194.8
Q ss_pred cceEecccccchhcchhHHhcCCCcccEEEeeccccccccC-cccccCCCCCceEeeccCCCcccchhccCCCCCcEEec
Q 039149 173 LLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTL 251 (536)
Q Consensus 173 Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l 251 (536)
++..+++.+ .+...+..++..+++|++|+++++ .++ .+ |..++.+++|++|++++|.+...+. ++.+++|++|++
T Consensus 12 l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDS-SLKQALASLRQSAWNVKELDLSGN-PLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTT-THHHHHHHHHTTGGGCSEEECTTS-CCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEEC
T ss_pred eeEeecccc-chhhhHHHHhccCCCCCEEECcCC-ccC-cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEEC
Confidence 445555543 666677777888899999999999 998 55 4689999999999999999987775 999999999999
Q ss_pred cCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCcc
Q 039149 252 RWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNK 331 (536)
Q Consensus 252 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~ 331 (536)
++| .++.+|. .++|++|++++|.+.. ... ..+++|+.|.++.+....+... ...
T Consensus 88 s~n-~l~~l~~-----~~~L~~L~l~~n~l~~---------------~~~---~~~~~L~~L~l~~N~l~~~~~~--~~~ 141 (317)
T 3o53_A 88 NNN-YVQELLV-----GPSIETLHAANNNISR---------------VSC---SRGQGKKNIYLANNKITMLRDL--DEG 141 (317)
T ss_dssp CSS-EEEEEEE-----CTTCCEEECCSSCCSE---------------EEE---CCCSSCEEEECCSSCCCSGGGB--CTG
T ss_pred cCC-ccccccC-----CCCcCEEECCCCccCC---------------cCc---cccCCCCEEECCCCCCCCccch--hhh
Confidence 998 6776653 4899999999998764 121 2367899999988776655321 112
Q ss_pred ccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCC-
Q 039149 332 LKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDS- 410 (536)
Q Consensus 332 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l- 410 (536)
..++|+.|+++++.- ...........+++|++|+++++ .++.++... .+++|+.|++++| .++.+
T Consensus 142 ~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-----------~l~~L~~L~Ls~N-~l~~l~ 207 (317)
T 3o53_A 142 CRSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-----------VFAKLKTLDLSSN-KLAFMG 207 (317)
T ss_dssp GGSSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC-----------CCTTCCEEECCSS-CCCEEC
T ss_pred ccCCCCEEECCCCCC-CcccHHHHhhccCcCCEEECCCC-cCccccccc-----------ccccCCEEECCCC-cCCcch
Confidence 234889999988643 33332212346789999999988 455553221 6789999999998 66664
Q ss_pred cccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccccccc-ccccCCCcCCCccceEeeccCCC
Q 039149 411 TFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDL-KSIHWKPLPFTHLKEMGVRACDQ 489 (536)
Q Consensus 411 ~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L-~~~~~~~~~~~~L~~L~i~~C~~ 489 (536)
+.+..+++|+.|+++++ .++.++. .+..+++|+.|++++++-. ..++.....+++|+.|.+.+|+.
T Consensus 208 ~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNN-KLVLIEK------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp GGGGGGTTCSEEECTTS-CCCEECT------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhcccCcccEEECcCC-cccchhh------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchh
Confidence 44778899999999887 4455543 5667889999999987544 24444456678899999988877
Q ss_pred CCCCCC
Q 039149 490 LEKLPL 495 (536)
Q Consensus 490 L~~lp~ 495 (536)
++..+.
T Consensus 275 l~~~~~ 280 (317)
T 3o53_A 275 LTGQNE 280 (317)
T ss_dssp HHSSSS
T ss_pred ccCCch
Confidence 776543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=1.2e-18 Score=166.83 Aligned_cols=218 Identities=25% Similarity=0.355 Sum_probs=167.5
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCV 207 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 207 (536)
..+.+.+..+..+|... ..++++|++.++.+..++. ...+++|++|++++| .++.++...+..+++|++|+++++
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n- 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN- 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC-
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC-
Confidence 34566666777777533 3789999999999998875 378999999999987 677775555899999999999999
Q ss_pred c-ccccC-cccccCCCCCceEeeccCCCccc-chhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccccc
Q 039149 208 N-LTLKL-PLGMSKLGSLELLDVSHTGIREL-PEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNF 284 (536)
Q Consensus 208 ~-i~~~l-p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~ 284 (536)
. +. .+ |..++.+.+|++|++++|.+..+ |..++.+++|++|++++| .++.+|...++++++|++|++++|.+..
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 167 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISS- 167 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCE-
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccc-
Confidence 6 77 66 67899999999999999999877 556899999999999998 7888887668999999999999997754
Q ss_pred ccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccc
Q 039149 285 HQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNE 364 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~ 364 (536)
.....+..+++|+.|+++.+.. ..... ..+..+++|+.
T Consensus 168 --------------~~~~~~~~l~~L~~L~l~~n~l---------------------------~~~~~-~~~~~l~~L~~ 205 (285)
T 1ozn_A 168 --------------VPERAFRGLHSLDRLLLHQNRV---------------------------AHVHP-HAFRDLGRLMT 205 (285)
T ss_dssp --------------ECTTTTTTCTTCCEEECCSSCC---------------------------CEECT-TTTTTCTTCCE
T ss_pred --------------cCHHHhcCccccCEEECCCCcc---------------------------cccCH-hHccCcccccE
Confidence 2223466667677666654322 11111 15677788888
Q ss_pred eecccccccceeecccccccccccCCcccCCccEEEeecCC
Q 039149 365 LYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCA 405 (536)
Q Consensus 365 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 405 (536)
|+++++ .+..++..... .+++|+.|++++++
T Consensus 206 L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 206 LYLFAN-NLSALPTEALA---------PLRALQYLRLNDNP 236 (285)
T ss_dssp EECCSS-CCSCCCHHHHT---------TCTTCCEEECCSSC
T ss_pred eeCCCC-cCCcCCHHHcc---------cCcccCEEeccCCC
Confidence 888887 45555433222 67888888888874
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=1.2e-19 Score=176.18 Aligned_cols=245 Identities=16% Similarity=0.096 Sum_probs=146.0
Q ss_pred ccceEEEeecCCcccccCCCCCCCcceEecccccchh--cchhHHhc-------CCCcccEEEeeccccccccCcccc--
Q 039149 149 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLN--MIADGFFQ-------LMPSLKVLKMSNCVNLTLKLPLGM-- 217 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~--~~~~~~~~-------~l~~Lr~L~L~~~~~i~~~lp~~i-- 217 (536)
.+++.+.+.++.+ .+|.. -...|++|+++++ .++ .++.. +. ++++|++|+++++ .+.+.+|..+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~-~~~~L~~L~L~~n-~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQ-FTDIIKSLSLKRL-TVRAARIPSR-ILFGALRVLGISGLQELTLENL-EVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT-CCCHH-HHHHHHHCCCCEE-EEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSS
T ss_pred CCceeEeeccccc-ccHHH-HHHHHhhcccccc-cccCCCcCHH-HHHHHHHhcCcCCccEEEccCC-cccchhHHHHHH
Confidence 3455566666666 44442 1122888888876 443 24443 33 6889999999999 8876778876
Q ss_pred cCCCCCceEeeccCCCcccchhccCC-----CCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccccccccccccc
Q 039149 218 SKLGSLELLDVSHTGIRELPEELKLL-----VNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSV 292 (536)
Q Consensus 218 ~~L~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 292 (536)
+.+++|++|++++|.+..+|..++.+ ++|++|++++| .+..++...++++++|++|++++|....
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------- 187 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELG--------- 187 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCH---------
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCc---------
Confidence 88999999999999888888777777 89999999987 7777775558889999999999887543
Q ss_pred ccCCcccccccc--cCccCCceEEEEecCchhhHHHhcC-ccccccceeEeecccCCcceecccccccccccccceeccc
Q 039149 293 LFGGGEVLIQEL--LGLKYLEVLELTLGSYHALQILLSS-NKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINK 369 (536)
Q Consensus 293 ~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 369 (536)
....+..+ ..+++|+.|+++.+....++.+... ....++|+.|+++++.-....+. +.+..+++|++|++++
T Consensus 188 ----~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 188 ----ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-PSCDWPSQLNSLNLSF 262 (312)
T ss_dssp ----HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-SCCCCCTTCCEEECTT
T ss_pred ----chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-hhhhhcCCCCEEECCC
Confidence 11123334 6677788887776665543322211 01112555555554432211111 1333445555555555
Q ss_pred ccccceeecccccccccccCCcccCCccEEEeecCCCCcCCcccccCCCccEEEEecC
Q 039149 370 GFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNC 427 (536)
Q Consensus 370 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c 427 (536)
+ .++.++.. .+++|+.|+++++ .++.+|.+..+++|+.|+++++
T Consensus 263 N-~l~~ip~~------------~~~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 263 T-GLKQVPKG------------LPAKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp S-CCSSCCSS------------CCSEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred C-ccChhhhh------------ccCCceEEECCCC-CCCCChhHhhCCCCCEEeccCC
Confidence 4 23322211 1145555555555 4444444445555555555443
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=4.4e-18 Score=164.53 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=48.8
Q ss_pred CCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEE
Q 039149 170 CPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCL 249 (536)
Q Consensus 170 ~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 249 (536)
+++|++|+++++ .++.++. +..+++|++|+++++ .+. .++. ++.+++|++|++++|.+..+| .++.+++|++|
T Consensus 40 l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n-~i~-~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDN-QIT-DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCC-CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred cCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCC-cCC-CChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 344444444433 3333432 444555555555555 444 4444 445555555555555544443 34445555555
Q ss_pred eccCCCCCCccchHHhhcCccCcEEEeccCcc
Q 039149 250 TLRWTFELNKIPRQLISNSSRLRVLRMLGTGL 281 (536)
Q Consensus 250 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 281 (536)
++++| .++.+|. +..+++|++|++++|..
T Consensus 113 ~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l 141 (308)
T 1h6u_A 113 DLTST-QITDVTP--LAGLSNLQVLYLDLNQI 141 (308)
T ss_dssp ECTTS-CCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCC-CCCCchh--hcCCCCCCEEECCCCcc
Confidence 55554 4444443 44555555555554443
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=3.4e-18 Score=175.99 Aligned_cols=216 Identities=16% Similarity=0.145 Sum_probs=122.4
Q ss_pred CCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcE
Q 039149 169 TCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKC 248 (536)
Q Consensus 169 ~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 248 (536)
.+++|++|++++| .+..+++..+..+++|++|+|++| .+. ..++ ++.+.+|++|++++|.+..+|. .++|++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLY-ETLD-LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTS-CCE-EEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCC-CCC-CCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCE
Confidence 4456777777765 555555444677777777777777 666 4443 6777777777777777666653 267777
Q ss_pred EeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhH--HH
Q 039149 249 LTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ--IL 326 (536)
Q Consensus 249 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~l 326 (536)
|++++| .+..+|.. .+++|++|++++|.+.. .....+..+++|+.|+++.+...... .+
T Consensus 104 L~L~~N-~l~~~~~~---~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 164 (487)
T 3oja_A 104 LHAANN-NISRVSCS---RGQGKKNIYLANNKITM---------------LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (487)
T ss_dssp EECCSS-CCCCEEEC---CCSSCEEEECCSSCCCS---------------GGGBCGGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred EECcCC-cCCCCCcc---ccCCCCEEECCCCCCCC---------------CCchhhcCCCCCCEEECCCCCCCCcChHHH
Confidence 777776 56666542 45677777777776543 22334455566666665544433211 11
Q ss_pred hcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCC
Q 039149 327 LSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAK 406 (536)
Q Consensus 327 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 406 (536)
.. ..++|+.|+++++. +...+ ....+++|+.|+++++ .+..++.... .+++|+.|+++++ .
T Consensus 165 ~~---~l~~L~~L~Ls~N~-l~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~~----------~l~~L~~L~Ls~N-~ 225 (487)
T 3oja_A 165 AA---SSDTLEHLNLQYNF-IYDVK---GQVVFAKLKTLDLSSN-KLAFMGPEFQ----------SAAGVTWISLRNN-K 225 (487)
T ss_dssp GG---GTTTCCEEECTTSC-CCEEE---CCCCCTTCCEEECCSS-CCCEECGGGG----------GGTTCSEEECTTS-C
T ss_pred hh---hCCcccEEecCCCc-ccccc---ccccCCCCCEEECCCC-CCCCCCHhHc----------CCCCccEEEecCC-c
Confidence 10 11255555555543 22221 2334666666666665 4444443321 5566666666666 4
Q ss_pred CcCCc-ccccCCCccEEEEecCchh
Q 039149 407 LKDST-FLVFAPNLKSLVLRNCHAM 430 (536)
Q Consensus 407 l~~l~-~l~~l~~L~~L~l~~c~~l 430 (536)
+..+| .+..+++|+.|++++++..
T Consensus 226 l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 226 LVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CcccchhhccCCCCCEEEcCCCCCc
Confidence 54433 3455666666666665443
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=3.4e-17 Score=158.27 Aligned_cols=151 Identities=21% Similarity=0.293 Sum_probs=129.5
Q ss_pred cccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCC
Q 039149 144 DVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSL 223 (536)
Q Consensus 144 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L 223 (536)
....+.+++.|++.++.+..++....+++|++|++++| .+..++. +..+++|++|+++++ .++ .+| .++.+.+|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n-~l~-~~~-~~~~l~~L 109 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGN-PLK-NVS-AIAGLQSI 109 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSC-CCS-CCG-GGTTCTTC
T ss_pred cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCC-cCC-Cch-hhcCCCCC
Confidence 34456789999999999999988889999999999987 7888877 899999999999999 898 776 69999999
Q ss_pred ceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCccccccc
Q 039149 224 ELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQE 303 (536)
Q Consensus 224 ~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (536)
++|++++|.+..+|. ++.+++|++|++++| .++.++. ++.+++|++|++++|.... +..
T Consensus 110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~ 168 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD-----------------LTP 168 (308)
T ss_dssp CEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC-----------------CGG
T ss_pred CEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCC-----------------Chh
Confidence 999999999999875 999999999999998 8888887 8999999999999997653 223
Q ss_pred ccCccCCceEEEEecCch
Q 039149 304 LLGLKYLEVLELTLGSYH 321 (536)
Q Consensus 304 l~~l~~L~~L~l~~~~~~ 321 (536)
+..+++|+.|+++.+...
T Consensus 169 l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp GTTCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCccC
Confidence 777777777777655443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=2.2e-18 Score=167.11 Aligned_cols=245 Identities=16% Similarity=0.164 Sum_probs=168.7
Q ss_pred CCCCCcceEecccccchhcchhHHhcCCCcccEEEeecccccc-ccCccccc-------CCCCCceEeeccCCCc-ccch
Q 039149 168 PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLT-LKLPLGMS-------KLGSLELLDVSHTGIR-ELPE 238 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~-~~lp~~i~-------~L~~L~~L~L~~~~i~-~lp~ 238 (536)
...++|+.|++++| .+ .+|..+... |++|+++++ .+. ..+|..++ ++.+|++|++++|.+. .+|.
T Consensus 40 ~~~~~L~~l~l~~n-~l-~~p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 40 GGGRSLEYLLKRVD-TE-ADLGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEECTTHHHHCC-TT-CCCHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred ccCCCceeEeeccc-cc-ccHHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34577888999877 45 778764433 899999998 774 34677666 7999999999999998 6888
Q ss_pred hc--cCCCCCcEEeccCCCCCCccchHHhhcC-----ccCcEEEeccCcccccccccccccccCCcccccccccCccCCc
Q 039149 239 EL--KLLVNLKCLTLRWTFELNKIPRQLISNS-----SRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLE 311 (536)
Q Consensus 239 ~i--~~L~~L~~L~l~~~~~l~~lp~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 311 (536)
.+ +.+++|++|++++| .++.+|.. ++.+ ++|++|++++|.+.. .....+..+++|+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNV-SWATRDAW-LAELQQWLKPGLKVLSIAQAHSLN---------------FSCEQVRVFPALS 176 (312)
T ss_dssp CSSSCCSCCCSEEEEESC-BCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCC---------------CCTTTCCCCSSCC
T ss_pred HHHHhcCCCccEEEccCC-CCcchhHH-HHHHHHhhcCCCcEEEeeCCCCcc---------------chHHHhccCCCCC
Confidence 76 89999999999998 78877764 7777 999999999998764 3446677888888
Q ss_pred eEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceee---ccccccccccc
Q 039149 312 VLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELK---IDYTEIVRKRR 388 (536)
Q Consensus 312 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~---~~~~~~~~~~~ 388 (536)
.|+++.+.......++... .+..+++|++|+++++ .++.++ .....
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~------------------------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~------ 225 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISAL------------------------CPLKFPTLQVLALRNA-GMETPSGVCSALAA------ 225 (312)
T ss_dssp EEECCSCTTCHHHHHHHHS------------------------CTTSCTTCCEEECTTS-CCCCHHHHHHHHHH------
T ss_pred EEECCCCCcCcchHHHHHH------------------------HhccCCCCCEEECCCC-cCcchHHHHHHHHh------
Confidence 8888766532211111000 2245666777777766 333221 11110
Q ss_pred CCcccCCccEEEeecCCCCcCC---cccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccc
Q 039149 389 EPFVFRSLHHVTIWRCAKLKDS---TFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPD 465 (536)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~l---~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 465 (536)
.+++|+.|+++++ .++.. +....+++|+.|++++|. ++.+|. ... ++|+.|+++++ .
T Consensus 226 ---~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~------------~~~--~~L~~L~Ls~N-~ 285 (312)
T 1wwl_A 226 ---ARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK------------GLP--AKLSVLDLSYN-R 285 (312)
T ss_dssp ---TTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS------------SCC--SEEEEEECCSS-C
T ss_pred ---cCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChhhh------------hcc--CCceEEECCCC-C
Confidence 4567788888777 45552 234456788888887764 344443 222 78888888876 5
Q ss_pred cccccCCCcCCCccceEeeccC
Q 039149 466 LKSIHWKPLPFTHLKEMGVRAC 487 (536)
Q Consensus 466 L~~~~~~~~~~~~L~~L~i~~C 487 (536)
++.++. ...+++|+.|++++.
T Consensus 286 l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 286 LDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCSCCC-TTTSCEEEEEECTTC
T ss_pred CCCChh-HhhCCCCCEEeccCC
Confidence 666654 667788888888774
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=3e-17 Score=168.95 Aligned_cols=236 Identities=17% Similarity=0.120 Sum_probs=167.8
Q ss_pred CCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcE
Q 039149 194 LMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRV 273 (536)
Q Consensus 194 ~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~ 273 (536)
.+++|++|+|+++ .+.+..|..++.+++|++|+|++|.+...+. ++.+++|++|++++| .++.+|. .++|++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV-----GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE-----CTTCCE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC-----CCCcCE
Confidence 3458999999999 9983345789999999999999999987765 999999999999998 7777764 389999
Q ss_pred EEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceeccc
Q 039149 274 LRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDA 353 (536)
Q Consensus 274 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 353 (536)
|++++|.+.. ... ..+++|+.|+++.+....+... .....++|+.|+++++.-....+.
T Consensus 104 L~L~~N~l~~---------------~~~---~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~- 162 (487)
T 3oja_A 104 LHAANNNISR---------------VSC---SRGQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTVNFA- 162 (487)
T ss_dssp EECCSSCCCC---------------EEE---CCCSSCEEEECCSSCCCSGGGB--CGGGGSSEEEEECTTSCCCEEEGG-
T ss_pred EECcCCcCCC---------------CCc---cccCCCCEEECCCCCCCCCCch--hhcCCCCCCEEECCCCCCCCcChH-
Confidence 9999998764 111 2457888888887776554321 112234788888887643332222
Q ss_pred cccc-ccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCC-cccccCCCccEEEEecCchhh
Q 039149 354 TAFA-DLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDS-TFLVFAPNLKSLVLRNCHAME 431 (536)
Q Consensus 354 ~~l~-~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~l~~l~~L~~L~l~~c~~l~ 431 (536)
.+. .+++|++|++++| .+..++... .+++|+.|+|+++ .++.+ +.+..+++|+.|++++|. +.
T Consensus 163 -~l~~~l~~L~~L~Ls~N-~l~~~~~~~-----------~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~ 227 (487)
T 3oja_A 163 -ELAASSDTLEHLNLQYN-FIYDVKGQV-----------VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LV 227 (487)
T ss_dssp -GGGGGTTTCCEEECTTS-CCCEEECCC-----------CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CC
T ss_pred -HHhhhCCcccEEecCCC-ccccccccc-----------cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc-Cc
Confidence 443 6788888888887 455443211 6788888888888 56654 456788888888888864 44
Q ss_pred hhhccCCcCCccccccCCCCCCccceecccccccc-ccccCCCcCCCccceEeec
Q 039149 432 EIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDL-KSIHWKPLPFTHLKEMGVR 485 (536)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L-~~~~~~~~~~~~L~~L~i~ 485 (536)
.+|. .+..+++|+.|++.+++-. ..++.....++.|+.+.+.
T Consensus 228 ~lp~------------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 228 LIEK------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECT------------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccch------------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 4543 5667788888888887543 2333334556777777775
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=3.3e-17 Score=152.44 Aligned_cols=102 Identities=21% Similarity=0.234 Sum_probs=52.1
Q ss_pred CcceEecccccchhcchhHHhcCCCcccEEEeecccc-ccccCcc-cccCCCCCceEeecc-CCCcccch-hccCCCCCc
Q 039149 172 HLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVN-LTLKLPL-GMSKLGSLELLDVSH-TGIRELPE-ELKLLVNLK 247 (536)
Q Consensus 172 ~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~-i~~~lp~-~i~~L~~L~~L~L~~-~~i~~lp~-~i~~L~~L~ 247 (536)
+|++|++++| .++.++...+..+++|++|+++++ . ++ .+|. .++.+++|++|++++ +.++.+|. .+..+++|+
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n-~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSID-VTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECC-SSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCC-CCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 4555555544 444454444555555555555555 3 44 4433 345555555555555 45555542 345555555
Q ss_pred EEeccCCCCCCccchHHhhcCccCc---EEEeccC
Q 039149 248 CLTLRWTFELNKIPRQLISNSSRLR---VLRMLGT 279 (536)
Q Consensus 248 ~L~l~~~~~l~~lp~~~i~~l~~L~---~L~l~~~ 279 (536)
+|++++| .++.+|. ++.+++|+ +|+++++
T Consensus 109 ~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 109 FLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred EEeCCCC-CCccccc--cccccccccccEEECCCC
Confidence 5555554 4445554 44455554 5555554
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=5.4e-17 Score=154.51 Aligned_cols=219 Identities=22% Similarity=0.269 Sum_probs=149.5
Q ss_pred EEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecccc
Q 039149 131 FLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVN 208 (536)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~ 208 (536)
.+.+.+..+..+|.... .++++|++.++.+..++. ...+++|++|++++| .+..++...+..+++|++|+++++ .
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-P 87 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC-c
Confidence 44555666666765333 578899999888888764 377888999999877 677777666888899999999998 8
Q ss_pred ccccCc-ccccCCCCCceEeeccCCCcccch-hccCCCCCcEEeccCCCCCCc--cchHHhhcCccCcEEEeccCccccc
Q 039149 209 LTLKLP-LGMSKLGSLELLDVSHTGIRELPE-ELKLLVNLKCLTLRWTFELNK--IPRQLISNSSRLRVLRMLGTGLLNF 284 (536)
Q Consensus 209 i~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~ 284 (536)
+. .++ ..++++.+|++|++++|.+..++. .++.+++|++|++++| .++. +|.. ++++++|++|++++|....
T Consensus 88 l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~- 163 (276)
T 2z62_A 88 IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS- 163 (276)
T ss_dssp CC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCE-
T ss_pred cC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCc-
Confidence 87 544 668889999999999988887765 5888899999999887 6665 5665 8889999999998887654
Q ss_pred ccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccc
Q 039149 285 HQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNE 364 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~ 364 (536)
.....+..+++|+.+.+ .|++++.. +..++. ......+|++
T Consensus 164 --------------~~~~~~~~l~~L~~l~l----------------------~L~ls~n~-l~~~~~--~~~~~~~L~~ 204 (276)
T 2z62_A 164 --------------IYCTDLRVLHQMPLLNL----------------------SLDLSLNP-MNFIQP--GAFKEIRLKE 204 (276)
T ss_dssp --------------ECGGGGHHHHTCTTCCE----------------------EEECCSSC-CCEECT--TSSCSCCEEE
T ss_pred --------------CCHHHhhhhhhccccce----------------------eeecCCCc-ccccCc--cccCCCcccE
Confidence 12223333333331110 23333321 222221 2223347888
Q ss_pred eecccccccceeecccccccccccCCcccCCccEEEeecCC
Q 039149 365 LYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCA 405 (536)
Q Consensus 365 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 405 (536)
|+++++ .++.++..... .+++|+.|++++++
T Consensus 205 L~L~~n-~l~~~~~~~~~---------~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 205 LALDTN-QLKSVPDGIFD---------RLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSS-CCSCCCTTTTT---------TCCSCCEEECCSSC
T ss_pred EECCCC-ceeecCHhHhc---------ccccccEEEccCCc
Confidence 888877 46555543322 67888899888773
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=1.9e-18 Score=177.44 Aligned_cols=268 Identities=18% Similarity=0.154 Sum_probs=144.4
Q ss_pred hcCCCcccEEEeeccccccccCccccc-----CCCCCceEeeccCCCcc-----cchhccCCCCCcEEeccCCCCCCccc
Q 039149 192 FQLMPSLKVLKMSNCVNLTLKLPLGMS-----KLGSLELLDVSHTGIRE-----LPEELKLLVNLKCLTLRWTFELNKIP 261 (536)
Q Consensus 192 ~~~l~~Lr~L~L~~~~~i~~~lp~~i~-----~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp 261 (536)
+..+++|++|+++++ .+.+..+..+. .+.+|++|++++|.+.. ++..+..+++|++|++++| .+...+
T Consensus 109 l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~ 186 (461)
T 1z7x_W 109 LRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DINEAG 186 (461)
T ss_dssp TTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHH
T ss_pred HccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHH
Confidence 455555555555555 44311121111 13345555555554442 3344455555666666555 233221
Q ss_pred hHHhh-----cCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhh--HHHhc-Ccccc
Q 039149 262 RQLIS-----NSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHAL--QILLS-SNKLK 333 (536)
Q Consensus 262 ~~~i~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~l~~-~~~~~ 333 (536)
...+. ..++|++|++++|..... ........+..+++|+.|+++.+..... ..+.. .....
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~-----------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~ 255 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSD-----------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS 255 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTT-----------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHH-----------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCC
Confidence 11121 234566666655544320 0001244566778888888887765432 12211 11113
Q ss_pred ccceeEeecccCCcceec---ccccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCC
Q 039149 334 SCIRSLFLQLAGDATSIV---DATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDS 410 (536)
Q Consensus 334 ~~L~~L~l~~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 410 (536)
++|+.|+++++. ++... +...+..+++|++|+++++. +......... ..+. ...++|+.|++++| .++..
T Consensus 256 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~--~~l~--~~~~~L~~L~L~~n-~l~~~ 328 (461)
T 1z7x_W 256 SRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLC--ETLL--EPGCQLESLWVKSC-SFTAA 328 (461)
T ss_dssp CCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHH--HHHT--STTCCCCEEECTTS-CCBGG
T ss_pred CCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHH--HHhc--cCCccceeeEcCCC-CCchH
Confidence 488899998873 33321 11246668899999998873 3322111110 0000 03469999999999 56542
Q ss_pred ------cccccCCCccEEEEecCchhhhhhccCCcCCccccccCC-CCCCccceeccccccccc-----cccCCCcCCCc
Q 039149 411 ------TFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHM-SPFENLQRLHVEDLPDLK-----SIHWKPLPFTH 478 (536)
Q Consensus 411 ------~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~L~-----~~~~~~~~~~~ 478 (536)
..+..+++|+.|++++|. +...... .+...+ ...++|++|++++| .+. .++.....+++
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~-------~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNR-LEDAGVR-------ELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSB-CHHHHHH-------HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhhCCCccEEEccCCc-cccccHH-------HHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCC
Confidence 235578999999999984 3332110 000011 12679999999998 455 44444455899
Q ss_pred cceEeeccCC
Q 039149 479 LKEMGVRACD 488 (536)
Q Consensus 479 L~~L~i~~C~ 488 (536)
|+.|++++|+
T Consensus 400 L~~L~l~~N~ 409 (461)
T 1z7x_W 400 LRELDLSNNC 409 (461)
T ss_dssp CCEEECCSSS
T ss_pred ccEEECCCCC
Confidence 9999999983
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=8e-17 Score=149.80 Aligned_cols=139 Identities=17% Similarity=0.331 Sum_probs=120.3
Q ss_pred cccCccccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeec-cccccccCc-
Q 039149 139 LKEAPDVKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSN-CVNLTLKLP- 214 (536)
Q Consensus 139 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~-~~~i~~~lp- 214 (536)
+..+|. -..+++.|++.++.++.++.. ..+++|++|++++|..++.++...|.++++|++|++++ + .++ .+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~-~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLT-YIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCC-EECT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-Cee-EcCH
Confidence 566666 235899999999999998873 78999999999988548888876689999999999998 7 888 776
Q ss_pred ccccCCCCCceEeeccCCCcccchhccCCCCCc---EEeccCCCCCCccchHHhhcCccCc-EEEeccCccc
Q 039149 215 LGMSKLGSLELLDVSHTGIRELPEELKLLVNLK---CLTLRWTFELNKIPRQLISNSSRLR-VLRMLGTGLL 282 (536)
Q Consensus 215 ~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~---~L~l~~~~~l~~lp~~~i~~l~~L~-~L~l~~~~~~ 282 (536)
..++.+.+|++|++++|.++.+|. ++.+++|+ +|++++|..++.+|...+.++++|+ +|+++++...
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 568899999999999999999997 88888888 9999998688889887788999999 9999887654
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=4.2e-17 Score=156.10 Aligned_cols=200 Identities=20% Similarity=0.202 Sum_probs=146.8
Q ss_pred cccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCce
Q 039149 146 KRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLEL 225 (536)
Q Consensus 146 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~ 225 (536)
..+.+++.+++.++.++.+|... .+++++|++++| .++.++...+..+++|++|+++++ .++ .+|.. +.+.+|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELT-KLQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCC-EEECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC-ccC-cccCC-CCCCcCCE
Confidence 34467889999999988887653 378999999977 677776666899999999999999 888 77764 78999999
Q ss_pred EeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCccccccccc
Q 039149 226 LDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELL 305 (536)
Q Consensus 226 L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (536)
|++++|.+..+|..+..+++|++|++++| .++.+|.+.+.++++|++|++++|.+.. .....+.
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~ 145 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKT---------------LPPGLLT 145 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCC---------------CCTTTTT
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCc---------------cChhhcc
Confidence 99999999999998999999999999998 8888887668999999999999887654 2223344
Q ss_pred CccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccc
Q 039149 306 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVR 385 (536)
Q Consensus 306 ~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 385 (536)
.+++|+.|+++.+. ++.++.. .+..+++|+.|+++++ .++.++....
T Consensus 146 ~l~~L~~L~L~~N~---------------------------l~~l~~~-~~~~l~~L~~L~L~~N-~l~~ip~~~~---- 192 (290)
T 1p9a_G 146 PTPKLEKLSLANNN---------------------------LTELPAG-LLNGLENLDTLLLQEN-SLYTIPKGFF---- 192 (290)
T ss_dssp TCTTCCEEECTTSC---------------------------CSCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTT----
T ss_pred cccCCCEEECCCCc---------------------------CCccCHH-HhcCcCCCCEEECCCC-cCCccChhhc----
Confidence 55555555544322 1222211 4556677777777766 4555543322
Q ss_pred cccCCcccCCccEEEeecCC
Q 039149 386 KRREPFVFRSLHHVTIWRCA 405 (536)
Q Consensus 386 ~~~~~~~~~~L~~L~l~~c~ 405 (536)
..++|+.|.+.+++
T Consensus 193 ------~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 193 ------GSHLLPFAFLHGNP 206 (290)
T ss_dssp ------TTCCCSEEECCSCC
T ss_pred ------ccccCCeEEeCCCC
Confidence 44567777777663
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=8.7e-17 Score=153.07 Aligned_cols=216 Identities=19% Similarity=0.187 Sum_probs=155.7
Q ss_pred EEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCc-ccccCCCCCceEeeccCC
Q 039149 154 LSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLP-LGMSKLGSLELLDVSHTG 232 (536)
Q Consensus 154 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp-~~i~~L~~L~~L~L~~~~ 232 (536)
+...+..+..+|... .++|++|++++| .++.++...+.++++|++|+++++ .+. .++ ..++++.+|++|++++|.
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQ-TIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCccccCCCC-CCCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCC-ccCHHHccCCcCCCEEECCCCc
Confidence 444455566666532 357999999977 777777655899999999999999 888 655 468889999999999999
Q ss_pred Ccccc-hhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCc
Q 039149 233 IRELP-EELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLE 311 (536)
Q Consensus 233 i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 311 (536)
+..++ ..+..+++|++|++++| .+..++...++++++|++|+++++..... .....+..+++|+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~l~~~~~~l~~L~ 152 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSF--------------KLPEYFSNLTNLE 152 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCC--------------CCCGGGGGCTTCC
T ss_pred cCccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCcccee--------------cCchhhccCCCCC
Confidence 98776 56889999999999998 77777764488999999999998876531 1245566667777
Q ss_pred eEEEEecCchhhHHHhcCccccccceeEeecccCCcceeccccccccccccc----ceecccccccceeecccccccccc
Q 039149 312 VLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLN----ELYINKGFELEELKIDYTEIVRKR 387 (536)
Q Consensus 312 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~l~~l~~~~~~~~~~~ 387 (536)
.|+++.+... ..+.. .+..+++|+ +|+++++ .+..++....
T Consensus 153 ~L~Ls~N~l~---------------------------~~~~~-~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~------ 197 (276)
T 2z62_A 153 HLDLSSNKIQ---------------------------SIYCT-DLRVLHQMPLLNLSLDLSLN-PMNFIQPGAF------ 197 (276)
T ss_dssp EEECCSSCCC---------------------------EECGG-GGHHHHTCTTCCEEEECCSS-CCCEECTTSS------
T ss_pred EEECCCCCCC---------------------------cCCHH-HhhhhhhccccceeeecCCC-cccccCcccc------
Confidence 6666544321 11111 444555555 7778776 4555543332
Q ss_pred cCCcccCCccEEEeecCCCCcCCcc--cccCCCccEEEEecCc
Q 039149 388 REPFVFRSLHHVTIWRCAKLKDSTF--LVFAPNLKSLVLRNCH 428 (536)
Q Consensus 388 ~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~l~~c~ 428 (536)
...+|+.|+++++ .++.++. +..+++|+.|++++++
T Consensus 198 ----~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 198 ----KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ----CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ----CCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 4458999999998 5777653 5678999999998753
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=7.3e-17 Score=153.01 Aligned_cols=128 Identities=23% Similarity=0.344 Sum_probs=91.2
Q ss_pred cceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccc-cCCCCCceEee
Q 039149 150 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGM-SKLGSLELLDV 228 (536)
Q Consensus 150 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i-~~L~~L~~L~L 228 (536)
+.+.+++.++.++.+|... .++++.|++++| .++.++...+.++++|++|+++++ .++ .+|..+ .++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccC-eeChhhhcCCCCCCEEEC
Confidence 4566777777777766532 256778888765 566666655777888888888887 777 666554 66788888888
Q ss_pred ccCCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccc
Q 039149 229 SHTGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 229 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
++|.+..+|.. +..+++|++|++++| .++.+|...++.+++|++|++++|.+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 88877777654 567778888888776 677776655677778888888777654
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=1.4e-17 Score=163.40 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=56.8
Q ss_pred hcCC--CcccEEEeeccccccccCcccccCCCCCceEeeccCCCcc--cchhccCCCCCcEEeccCCCCCC-ccchHHhh
Q 039149 192 FQLM--PSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRE--LPEELKLLVNLKCLTLRWTFELN-KIPRQLIS 266 (536)
Q Consensus 192 ~~~l--~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~-~lp~~~i~ 266 (536)
+..+ +++++|+++++ .+. ..+..+..+.+|++|++++|.+.. +|..+..+++|++|++++| .++ ..|.. ++
T Consensus 64 ~~~~~~~~l~~L~l~~n-~l~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~-l~ 139 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRS-FMD-QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNT-LA 139 (336)
T ss_dssp HHHHHHTTCSEEECTTC-EEC-SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHH-HT
T ss_pred HHhhhhccceEEEcCCc-ccc-ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHH-Hh
Confidence 4444 67777777777 666 444556667777777777776652 6666777777777777776 444 34443 66
Q ss_pred cCccCcEEEeccCc
Q 039149 267 NSSRLRVLRMLGTG 280 (536)
Q Consensus 267 ~l~~L~~L~l~~~~ 280 (536)
++++|++|++++|.
T Consensus 140 ~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 140 KNSNLVRLNLSGCS 153 (336)
T ss_dssp TCTTCSEEECTTCB
T ss_pred cCCCCCEEECCCCC
Confidence 77777777777763
No 77
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=2.4e-17 Score=174.66 Aligned_cols=308 Identities=16% Similarity=0.133 Sum_probs=155.6
Q ss_pred ccccceEEEeecCCccccc-----CC-CCCCCcceEecccccchh-----cchhHHhcCCCcccEEEeeccccccccCcc
Q 039149 147 RWENVRRLSLMQNQIETLS-----EV-PTCPHLLTLFLDFNENLN-----MIADGFFQLMPSLKVLKMSNCVNLTLKLPL 215 (536)
Q Consensus 147 ~~~~l~~L~l~~~~~~~l~-----~~-~~~~~Lr~L~l~~~~~l~-----~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~ 215 (536)
.+++++.|++.++.+.... .. ..+++|++|+++++ .++ .++. ++.++++|++|++++| .+. .+|.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~-~~~~~~~L~~L~L~~~-~~~-~l~~ 237 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLET-IARNCRSLVSVKVGDF-EIL-ELVG 237 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHH-HHHHCTTCCEEECSSC-BGG-GGHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHH-HHhhCCCCcEEeccCc-cHH-HHHH
Confidence 3467788888777653321 11 45677778877765 332 2222 2566777888888777 676 6666
Q ss_pred cccCCCCCceEeeccCC-C---cccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccc
Q 039149 216 GMSKLGSLELLDVSHTG-I---RELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDS 291 (536)
Q Consensus 216 ~i~~L~~L~~L~L~~~~-i---~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 291 (536)
.++++++|++|++++.. . ...+..+..+++|+.|++.++ ....+|.. +..+++|++|++++|....
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~-------- 307 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLET-------- 307 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCH--------
T ss_pred HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCH--------
Confidence 66677777777776431 1 133344555566666666553 34445543 5556666666666655321
Q ss_pred cccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecc----------cCCcceecccccccc---
Q 039149 292 VLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQL----------AGDATSIVDATAFAD--- 358 (536)
Q Consensus 292 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~~l~~--- 358 (536)
......+..+++|+.|.+. +.. ....+.......++|+.|++.+ |..++..........
T Consensus 308 ------~~~~~~~~~~~~L~~L~L~-~~~-~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (592)
T 3ogk_B 308 ------EDHCTLIQKCPNLEVLETR-NVI-GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE 379 (592)
T ss_dssp ------HHHHHHHTTCTTCCEEEEE-GGG-HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT
T ss_pred ------HHHHHHHHhCcCCCEEecc-Ccc-CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc
Confidence 0111223444555555554 111 1111111111112455555542 333332211111223
Q ss_pred ----------------------cccccceeccc---ccccceeecccccccccccCCcccCCccEEEeecCCC-CcC--C
Q 039149 359 ----------------------LNHLNELYINK---GFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAK-LKD--S 410 (536)
Q Consensus 359 ----------------------~~~L~~L~l~~---~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~--l 410 (536)
+++|++|++++ |..++..+.+.. .+... ..+++|++|+++.|.+ +.+ +
T Consensus 380 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~-~~~~~---~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG-VRSLL---IGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH-HHHHH---HHCTTCCEEEEECCGGGCCHHHH
T ss_pred CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH-HHHHH---HhCCCCCEEEEecCCCCccHHHH
Confidence 44455555542 222222211100 00000 1466777777766543 222 2
Q ss_pred cccc-cCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccccccccc--ccCCCcCCCccceEeeccC
Q 039149 411 TFLV-FAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKS--IHWKPLPFTHLKEMGVRAC 487 (536)
Q Consensus 411 ~~l~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~--~~~~~~~~~~L~~L~i~~C 487 (536)
..++ .+++|+.|+|++|..-.... ......+++|+.|+|++|+ +.. ++.....+++|+.|++++|
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~-----------~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGL-----------MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHH-----------HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred HHHHHhCccceEeeccCCCCCHHHH-----------HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence 2222 36777777777764221111 1133567899999999987 432 2222345799999999999
Q ss_pred CCCCCC
Q 039149 488 DQLEKL 493 (536)
Q Consensus 488 ~~L~~l 493 (536)
. ++..
T Consensus 524 ~-it~~ 528 (592)
T 3ogk_B 524 R-ASMT 528 (592)
T ss_dssp B-CCTT
T ss_pred c-CCHH
Confidence 7 5543
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=1.8e-16 Score=156.31 Aligned_cols=237 Identities=15% Similarity=0.111 Sum_probs=124.8
Q ss_pred EeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcc-cccCCCCCce-EeeccCC
Q 039149 155 SLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPL-GMSKLGSLEL-LDVSHTG 232 (536)
Q Consensus 155 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~-~i~~L~~L~~-L~L~~~~ 232 (536)
...+++++.+|... .+++++|+|++| .++.+|.+.|.++++|++|+|+++ .+.+.+|. .+.++.+|++ +.+.+++
T Consensus 15 ~C~~~~Lt~iP~~l-~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 15 LCQESKVTEIPSDL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEESTTCCSCCTTC-CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EecCCCCCccCcCc-CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccCCc
Confidence 33334444444321 234555555543 444555444555555555555555 43213332 2344444443 2233344
Q ss_pred Ccccc-hhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCc-cCC
Q 039149 233 IRELP-EELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGL-KYL 310 (536)
Q Consensus 233 i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L 310 (536)
+..+| ..++.+++|++|++++| .++.+|........++..|++.++..... .....+..+ ..+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~--------------l~~~~f~~~~~~l 156 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHT--------------IERNSFVGLSFES 156 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCE--------------ECTTSSTTSBSSC
T ss_pred ccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccc--------------ccccchhhcchhh
Confidence 55443 23455555555555554 44444432222333444444433222110 001111121 224
Q ss_pred ceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCC
Q 039149 311 EVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREP 390 (536)
Q Consensus 311 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 390 (536)
+.|.++.+....++.-... ..+++.|.+.++..++.++.. .+..+++|+.|+++++ .++.++..
T Consensus 157 ~~L~L~~N~i~~i~~~~f~---~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N-~l~~lp~~----------- 220 (350)
T 4ay9_X 157 VILWLNKNGIQEIHNSAFN---GTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRT-RIHSLPSY----------- 220 (350)
T ss_dssp EEEECCSSCCCEECTTSST---TEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTS-CCCCCCSS-----------
T ss_pred hhhccccccccCCChhhcc---ccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCC-CcCccChh-----------
Confidence 4444444433332211111 126777888777777777653 6788999999999988 66666532
Q ss_pred cccCCccEEEeecCCCCcCCcccccCCCccEEEEec
Q 039149 391 FVFRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRN 426 (536)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~ 426 (536)
.+.+|++|.+.++.+++.+|.+..+++|+.+++.+
T Consensus 221 -~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 -GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp -SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred -hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 67889999988888899999899999999999865
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=2.6e-16 Score=149.20 Aligned_cols=170 Identities=24% Similarity=0.422 Sum_probs=140.7
Q ss_pred ceEEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecc
Q 039149 129 RNFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNC 206 (536)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 206 (536)
...+.+.+..+..+|.... .+++.|++.++.+..++. ...+++|++|++++| .++.++..++..+++|++|+++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC
Confidence 3567777778888876443 689999999999998875 478999999999977 788898887899999999999999
Q ss_pred ccccccCcc-cccCCCCCceEeeccCCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccccc
Q 039149 207 VNLTLKLPL-GMSKLGSLELLDVSHTGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNF 284 (536)
Q Consensus 207 ~~i~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~ 284 (536)
.+. .+|. .++.+.+|++|++++|.+..+|.. ++.+++|++|++++| .++.+|...++.+++|++|++++|.+..
T Consensus 96 -~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 171 (270)
T 2o6q_A 96 -KLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKR- 171 (270)
T ss_dssp -CCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred -cCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcE-
Confidence 898 7765 468899999999999999988754 789999999999998 8899998778999999999999987754
Q ss_pred ccccccccccCCcccccccccCccCCceEEEEec
Q 039149 285 HQASEDSVLFGGGEVLIQELLGLKYLEVLELTLG 318 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 318 (536)
.....+..+++|+.|+++.+
T Consensus 172 --------------~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 172 --------------VPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp --------------CCTTTTTTCTTCCEEECCSS
T ss_pred --------------eChhHhccCCCcCEEECCCC
Confidence 22334566676766666543
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=3.7e-16 Score=153.98 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=79.9
Q ss_pred ceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcc-cccCCCCCceEeeccCCC-cccch-hccCCCCCcEEe
Q 039149 174 LTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPL-GMSKLGSLELLDVSHTGI-RELPE-ELKLLVNLKCLT 250 (536)
Q Consensus 174 r~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~-~i~~L~~L~~L~L~~~~i-~~lp~-~i~~L~~L~~L~ 250 (536)
++++.+++ .++.+|.++ .+++++|+|+++ .|+ .+|. .+++|++|++|+|++|.+ +.+|. .+.++++|+.+.
T Consensus 12 ~~v~C~~~-~Lt~iP~~l---~~~l~~L~Ls~N-~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL---PRNAIELRFVLT-KLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEEST-TCCSCCTTC---CTTCSEEEEESC-CCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCC-CCCccCcCc---CCCCCEEEccCC-cCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 56666643 788888763 367899999999 898 8886 578899999999999976 45664 467888887755
Q ss_pred ccCCCCCCccchHHhhcCccCcEEEeccCcccc
Q 039149 251 LRWTFELNKIPRQLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 251 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 283 (536)
..++..++.+|++++..+++|++|+++++.+..
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred cccCCcccccCchhhhhcccccccccccccccc
Confidence 554458888877768889999999999887653
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=3.5e-18 Score=175.37 Aligned_cols=307 Identities=18% Similarity=0.181 Sum_probs=137.0
Q ss_pred cccceEEEeecCCccc-----ccCC-CCCCCcceEecccccchhc-chhHHhcCCC----cccEEEeeccccccc----c
Q 039149 148 WENVRRLSLMQNQIET-----LSEV-PTCPHLLTLFLDFNENLNM-IADGFFQLMP----SLKVLKMSNCVNLTL----K 212 (536)
Q Consensus 148 ~~~l~~L~l~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~~l~~-~~~~~~~~l~----~Lr~L~L~~~~~i~~----~ 212 (536)
+++++.|++.++.+.. ++.. ..+++|++|++++| .+.. .+..+...++ +|++|++++| .+.+ .
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 104 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGV 104 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHH
Confidence 4455566665555442 1211 34455666666554 2322 1222233333 4666666655 4441 2
Q ss_pred CcccccCCCCCceEeeccCCCccc-chhc-----cCCCCCcEEeccCCCCCCc-----cchHHhhcCccCcEEEeccCcc
Q 039149 213 LPLGMSKLGSLELLDVSHTGIREL-PEEL-----KLLVNLKCLTLRWTFELNK-----IPRQLISNSSRLRVLRMLGTGL 281 (536)
Q Consensus 213 lp~~i~~L~~L~~L~L~~~~i~~l-p~~i-----~~L~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~ 281 (536)
+|..+..+++|++|++++|.+... +..+ ...++|++|++++| .++. ++.. +..+++|++|++++|..
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASV-LRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHH-HHHCTTCCEEECCSSBC
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHH-HhhCCCCCEEECcCCCc
Confidence 345555556666666665554321 1111 12345666666555 3332 2222 44555666666665554
Q ss_pred cccccccccccccCCccccccccc-----CccCCceEEEEecCchhh--HHHhcCccccccceeEeecccCCcceeccc-
Q 039149 282 LNFHQASEDSVLFGGGEVLIQELL-----GLKYLEVLELTLGSYHAL--QILLSSNKLKSCIRSLFLQLAGDATSIVDA- 353 (536)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~- 353 (536)
.. ..+..+. ..++|+.|+++.+..... ..+.......++|+.|+++++. +......
T Consensus 183 ~~---------------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~ 246 (461)
T 1z7x_W 183 NE---------------AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAE 246 (461)
T ss_dssp HH---------------HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHH
T ss_pred ch---------------HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHH
Confidence 32 1111111 234555665554443321 1111111112255666665542 2211100
Q ss_pred --c-cccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCCc--ccc-----cCCCccEEE
Q 039149 354 --T-AFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDST--FLV-----FAPNLKSLV 423 (536)
Q Consensus 354 --~-~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~-----~l~~L~~L~ 423 (536)
+ ....+++|++|++++| .+........ +..+ ..+++|++|+++++ .+.+.. .+. ..++|+.|+
T Consensus 247 l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l--~~~l---~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWEC-GITAKGCGDL--CRVL---RAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTS-CCCHHHHHHH--HHHH---HHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHhcCCCCceEEECcCC-CCCHHHHHHH--HHHH---hhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeE
Confidence 0 1123556666666655 2322110000 0000 03566666666666 343211 111 225666676
Q ss_pred EecCchhhhhhccCCcCCccccccCCCCCCccceeccccccccccccCC------CcCCCccceEeeccCCCCC
Q 039149 424 LRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIHWK------PLPFTHLKEMGVRACDQLE 491 (536)
Q Consensus 424 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~------~~~~~~L~~L~i~~C~~L~ 491 (536)
+++|..-..... .++..+..+++|+.|+++++ .+...... ....++|+.|++++| +++
T Consensus 320 L~~n~l~~~~~~--------~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 320 VKSCSFTAACCS--------HFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp CTTSCCBGGGHH--------HHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred cCCCCCchHHHH--------HHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence 666642211000 01113345688888888877 44432211 112578999999998 455
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=5.3e-17 Score=172.11 Aligned_cols=306 Identities=13% Similarity=0.040 Sum_probs=189.0
Q ss_pred cceEEEeecCCc-c--cccCC-CCCCCcceEecccccchhcc----hhHHhcCCCcccEEEeecccccc----ccCcccc
Q 039149 150 NVRRLSLMQNQI-E--TLSEV-PTCPHLLTLFLDFNENLNMI----ADGFFQLMPSLKVLKMSNCVNLT----LKLPLGM 217 (536)
Q Consensus 150 ~l~~L~l~~~~~-~--~l~~~-~~~~~Lr~L~l~~~~~l~~~----~~~~~~~l~~Lr~L~L~~~~~i~----~~lp~~i 217 (536)
+++.|++.++.. . .++.. ..+++|++|++++| .+... -..++..+++|++|+++++ .+. +.++..+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHH
Confidence 499999987652 1 12221 47899999999988 43332 2234678999999999998 664 2445556
Q ss_pred cCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCC---CccchHHhhcCccCcEEEeccCccccccccccccccc
Q 039149 218 SKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFEL---NKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLF 294 (536)
Q Consensus 218 ~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l---~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 294 (536)
.++++|++|++++|.+..+|..++.+++|++|+++++... ...+.. +..+++|+.|.+..+...
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~------------ 283 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVFPRKLCRLGLSYMGPN------------ 283 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCCCTTCCEEEETTCCTT------------
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-hhccccccccCccccchh------------
Confidence 7899999999999999999999999999999999864222 223333 778899999999875332
Q ss_pred CCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceeccc-----
Q 039149 295 GGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINK----- 369 (536)
Q Consensus 295 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~----- 369 (536)
.....+..+++|+.|+++.+..... .+.......++|+.|++.++ ............+++|++|++++
T Consensus 284 ----~l~~~~~~~~~L~~L~Ls~~~l~~~-~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~ 356 (592)
T 3ogk_B 284 ----EMPILFPFAAQIRKLDLLYALLETE-DHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQ 356 (592)
T ss_dssp ----TGGGGGGGGGGCCEEEETTCCCCHH-HHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSS
T ss_pred ----HHHHHHhhcCCCcEEecCCCcCCHH-HHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecCcccc
Confidence 3445566788999999987663222 22211222348999999843 22222221346788999999994
Q ss_pred -----ccccc---------------eeeccccccccc-ccC-CcccCCccEEEeec---CCCCcCCc-------ccccCC
Q 039149 370 -----GFELE---------------ELKIDYTEIVRK-RRE-PFVFRSLHHVTIWR---CAKLKDST-------FLVFAP 417 (536)
Q Consensus 370 -----~~~l~---------------~l~~~~~~~~~~-~~~-~~~~~~L~~L~l~~---c~~l~~l~-------~l~~l~ 417 (536)
|..+. .+........+. +.. ...+++|+.|.+.+ |..++..| .+..++
T Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~ 436 (592)
T 3ogk_B 357 GMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436 (592)
T ss_dssp TTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT
T ss_pred ccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC
Confidence 53333 222100000000 000 00255666666653 33444321 133466
Q ss_pred CccEEEEecCch-hhhhhccCCcCCccccccCCCCCCccceecccccccccc--ccCCCcCCCccceEeeccCC
Q 039149 418 NLKSLVLRNCHA-MEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKS--IHWKPLPFTHLKEMGVRACD 488 (536)
Q Consensus 418 ~L~~L~l~~c~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~--~~~~~~~~~~L~~L~i~~C~ 488 (536)
+|+.|+++.|.. +..... ......+++|+.|++.+|. +.. ++.....+++|+.|++++|+
T Consensus 437 ~L~~L~L~~~~~~l~~~~~----------~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 437 KLRRFAFYLRQGGLTDLGL----------SYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp TCCEEEEECCGGGCCHHHH----------HHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CCCEEEEecCCCCccHHHH----------HHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 777777765543 111100 0011246788888888774 432 22223467999999999997
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=1.8e-16 Score=150.37 Aligned_cols=156 Identities=21% Similarity=0.303 Sum_probs=122.7
Q ss_pred ccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCccc-ccCCC
Q 039149 143 PDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLG-MSKLG 221 (536)
Q Consensus 143 ~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~-i~~L~ 221 (536)
.....+.+++.|.+.++.+..++....+++|++|++++| .+..++. +..+++|++|+++++ .++ .+|.. ++++.
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~ 109 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDISA--LKELTNLTYLILTGN-QLQ-SLPNGVFDKLT 109 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECTTS-CCC-CCCTTTTTTCT
T ss_pred cccccccceeeeeeCCCCcccccccccCCCCcEEECCCC-CCCCchh--hcCCCCCCEEECCCC-ccC-ccChhHhcCCc
Confidence 334556788999999988888888888999999999977 5666653 788999999999999 888 66544 68899
Q ss_pred CCceEeeccCCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccc
Q 039149 222 SLELLDVSHTGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVL 300 (536)
Q Consensus 222 ~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 300 (536)
+|++|++++|.+..+|.. ++.+++|++|++++| .++.+|...++++++|++|++++|.... ..
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~ 173 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS---------------LP 173 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC---------------CC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc---------------cC
Confidence 999999999988888765 688999999999998 7888887657889999999999887654 22
Q ss_pred cccccCccCCceEEEEecC
Q 039149 301 IQELLGLKYLEVLELTLGS 319 (536)
Q Consensus 301 ~~~l~~l~~L~~L~l~~~~ 319 (536)
...+..+++|+.|+++.+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred HHHhcCCccCCEEECCCCc
Confidence 3335666777776665443
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=3.1e-17 Score=160.88 Aligned_cols=105 Identities=15% Similarity=0.095 Sum_probs=63.9
Q ss_pred CCcceEecccccchhcchhHHhcCCCcccEEEeecccccccc-CcccccCCCCCceEeeccCCCc-ccchhccCCCCCcE
Q 039149 171 PHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLK-LPLGMSKLGSLELLDVSHTGIR-ELPEELKLLVNLKC 248 (536)
Q Consensus 171 ~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~-lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~ 248 (536)
++++.|++.++ .+...+.. +..+++|++|++++| .+.+. +|..++.+++|++|++++|.+. ..|..++.+++|++
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCc-cccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 56666666654 34443333 445666777777766 55522 5555666677777777766655 45556666677777
Q ss_pred EeccCCCCCCc--cchHHhhcCccCcEEEeccC
Q 039149 249 LTLRWTFELNK--IPRQLISNSSRLRVLRMLGT 279 (536)
Q Consensus 249 L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~ 279 (536)
|++++|..++. +|.. +.++++|++|++++|
T Consensus 147 L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp EECTTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred EECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 77776644552 4443 666677777777666
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=1.2e-15 Score=144.68 Aligned_cols=170 Identities=26% Similarity=0.404 Sum_probs=143.9
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNL 209 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i 209 (536)
..+...+..+..++....+.+++.|++.+|.+..++....+++|++|++++| .++.++...+..+++|++|++++| .+
T Consensus 44 ~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l 121 (272)
T 3rfs_A 44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-QL 121 (272)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred eeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-cC
Confidence 4556666677777888888999999999999999887899999999999987 788888877899999999999999 89
Q ss_pred cccCccc-ccCCCCCceEeeccCCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccc
Q 039149 210 TLKLPLG-MSKLGSLELLDVSHTGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQA 287 (536)
Q Consensus 210 ~~~lp~~-i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 287 (536)
+ .+|.. ++.+.+|++|++++|.+..+|.. ++.+++|++|++++| .++.+|...++.+++|++|++.+|....
T Consensus 122 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~---- 195 (272)
T 3rfs_A 122 Q-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKS---- 195 (272)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC----
T ss_pred C-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCc----
Confidence 8 66654 78999999999999999988865 689999999999998 7888888767899999999999998764
Q ss_pred cccccccCCcccccccccCccCCceEEEEec
Q 039149 288 SEDSVLFGGGEVLIQELLGLKYLEVLELTLG 318 (536)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 318 (536)
.....+..+++|+.|++..+
T Consensus 196 -----------~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 196 -----------VPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp -----------CCTTTTTTCTTCCEEECCSS
T ss_pred -----------cCHHHHhCCcCCCEEEccCC
Confidence 23344667777777776644
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=1.5e-15 Score=145.36 Aligned_cols=170 Identities=28% Similarity=0.331 Sum_probs=141.8
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCV 207 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 207 (536)
..+.+.+..+..+|.... .+++.|++.+|.+..++. ...+++|++|++++| .++.++. ...+++|++|+++++
T Consensus 13 ~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N- 87 (290)
T 1p9a_G 13 LEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHN- 87 (290)
T ss_dssp CEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSS-
T ss_pred cEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC--CCCCCcCCEEECCCC-
Confidence 456666777777775443 789999999999988754 388999999999987 7777776 488999999999999
Q ss_pred cccccCcccccCCCCCceEeeccCCCcccc-hhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccccccc
Q 039149 208 NLTLKLPLGMSKLGSLELLDVSHTGIRELP-EELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQ 286 (536)
Q Consensus 208 ~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 286 (536)
.++ .+|..+..+.+|++|++++|.++.+| ..+..+++|++|++++| .++.+|.+++..+++|++|++++|.+..
T Consensus 88 ~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~--- 162 (290)
T 1p9a_G 88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTE--- 162 (290)
T ss_dssp CCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSC---
T ss_pred cCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCc---
Confidence 999 99999999999999999999999988 45899999999999998 8899998878899999999999998764
Q ss_pred ccccccccCCcccccccccCccCCceEEEEecCch
Q 039149 287 ASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 321 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 321 (536)
.....+..+++|+.|+++.+...
T Consensus 163 ------------l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 163 ------------LPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ------------CCTTTTTTCTTCCEEECCSSCCC
T ss_pred ------------cCHHHhcCcCCCCEEECCCCcCC
Confidence 22334566788888877765443
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=2.6e-15 Score=135.07 Aligned_cols=152 Identities=15% Similarity=0.215 Sum_probs=130.6
Q ss_pred cccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCce
Q 039149 146 KRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLEL 225 (536)
Q Consensus 146 ~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~ 225 (536)
..+.+++.|++.++.+..++....+++|++|++++| .+..++. +..+++|++|+++++ .+.+..|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCCE
Confidence 456789999999999999887789999999999988 6766664 899999999999999 888457888999999999
Q ss_pred EeeccCCCcc-cchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccc
Q 039149 226 LDVSHTGIRE-LPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQEL 304 (536)
Q Consensus 226 L~L~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 304 (536)
|++++|.+.. .|..++.+++|++|++++|..++.+|. +..+++|++|++++|.+.. +..+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-----------------~~~l 177 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-----------------YRGI 177 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-----------------CTTG
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-----------------hHHh
Confidence 9999999884 678899999999999999954889984 9999999999999998753 3367
Q ss_pred cCccCCceEEEEecCc
Q 039149 305 LGLKYLEVLELTLGSY 320 (536)
Q Consensus 305 ~~l~~L~~L~l~~~~~ 320 (536)
..+++|+.|+++.+..
T Consensus 178 ~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQTI 193 (197)
T ss_dssp GGCSSCCEEEECBC--
T ss_pred ccCCCCCEEEeeCccc
Confidence 7888899998876654
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=3.8e-15 Score=139.51 Aligned_cols=171 Identities=25% Similarity=0.364 Sum_probs=130.3
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCV 207 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 207 (536)
..+.+.+..+..+|.... .+++.|++.++.+..++.. ..+++|++|++++| .++.++...+..+++|++|+++++
T Consensus 17 ~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n- 93 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN- 93 (251)
T ss_dssp TEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred eEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-
Confidence 456667777777775443 6788888888888876653 67888888888876 677777666788888888888888
Q ss_pred cccccCc-ccccCCCCCceEeeccCCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccc
Q 039149 208 NLTLKLP-LGMSKLGSLELLDVSHTGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFH 285 (536)
Q Consensus 208 ~i~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 285 (536)
.++ .+| ..++.+.+|++|++++|.+..+|.. ++.+++|++|++++| .++.+|.+.++.+++|++|++++|....
T Consensus 94 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-- 169 (251)
T 3m19_A 94 QLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQS-- 169 (251)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC--
T ss_pred ccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCc--
Confidence 888 665 4467888888888888888888765 578888888888887 7888887558888888888888887654
Q ss_pred cccccccccCCcccccccccCccCCceEEEEecCc
Q 039149 286 QASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 320 (536)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 320 (536)
.....+..+++|+.|.++.+..
T Consensus 170 -------------~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 170 -------------VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp -------------CCTTTTTTCTTCCEEECCSCCB
T ss_pred -------------cCHHHHhCCCCCCEEEeeCCce
Confidence 2334566777788887776543
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=3.1e-15 Score=143.18 Aligned_cols=153 Identities=22% Similarity=0.316 Sum_probs=118.5
Q ss_pred ccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCC
Q 039149 143 PDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGS 222 (536)
Q Consensus 143 ~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~ 222 (536)
.....+.+++.|++.++.+..++....+++|++|++++| .++.++. +..+++|++|+++++ .++ .+|. ++.+.+
T Consensus 40 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~-~~~~-l~~l~~ 113 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN-KVK-DLSS-LKDLKK 113 (291)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCC-CGGG-GTTCTT
T ss_pred cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCC-cCC-CChh-hccCCC
Confidence 334456788888888888888877788888899988876 6777766 788888999999888 888 6654 888888
Q ss_pred CceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccc
Q 039149 223 LELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQ 302 (536)
Q Consensus 223 L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (536)
|++|++++|.+..++ .++.+++|++|++++| .++.++. ++.+++|++|++++|.+.. +.
T Consensus 114 L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~-----------------~~ 172 (291)
T 1h6t_A 114 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISD-----------------IV 172 (291)
T ss_dssp CCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCC-----------------CG
T ss_pred CCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCcccc-----------------ch
Confidence 999999888888874 6788888899998887 7777754 8888889999888887653 12
Q ss_pred cccCccCCceEEEEecCchh
Q 039149 303 ELLGLKYLEVLELTLGSYHA 322 (536)
Q Consensus 303 ~l~~l~~L~~L~l~~~~~~~ 322 (536)
.+..+++|+.|+++.+....
T Consensus 173 ~l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 173 PLAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp GGTTCTTCCEEECCSSCCCB
T ss_pred hhcCCCccCEEECCCCcCCC
Confidence 26677777777776554433
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=2.3e-16 Score=157.79 Aligned_cols=85 Identities=16% Similarity=0.101 Sum_probs=46.7
Q ss_pred CCCCCcceEecccccchhcchh----HHhcCCCcccEEEeecccccc---ccCcccc-------cCCCCCceEeeccCCC
Q 039149 168 PTCPHLLTLFLDFNENLNMIAD----GFFQLMPSLKVLKMSNCVNLT---LKLPLGM-------SKLGSLELLDVSHTGI 233 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~~~~~----~~~~~l~~Lr~L~L~~~~~i~---~~lp~~i-------~~L~~L~~L~L~~~~i 233 (536)
..+++|++|++++| .+..... ..+..+++|++|+|+++ .+. +.+|..+ ..+++|++|++++|.+
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 44566666666655 3332211 11455666666666665 322 2233333 4566666666666655
Q ss_pred cc-----cchhccCCCCCcEEeccCC
Q 039149 234 RE-----LPEELKLLVNLKCLTLRWT 254 (536)
Q Consensus 234 ~~-----lp~~i~~L~~L~~L~l~~~ 254 (536)
.. +|..+..+++|++|++++|
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 54 5556666666666666665
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=147.38 Aligned_cols=116 Identities=15% Similarity=0.042 Sum_probs=85.7
Q ss_pred CCCcccEEEeeccccccccCcccc--cCCCCCceEeeccCCCccc-c----hhccCCCCCcEEeccCCCCCCccchHHhh
Q 039149 194 LMPSLKVLKMSNCVNLTLKLPLGM--SKLGSLELLDVSHTGIREL-P----EELKLLVNLKCLTLRWTFELNKIPRQLIS 266 (536)
Q Consensus 194 ~l~~Lr~L~L~~~~~i~~~lp~~i--~~L~~L~~L~L~~~~i~~l-p----~~i~~L~~L~~L~l~~~~~l~~lp~~~i~ 266 (536)
.+++|++|+++++ .+.+..|..+ +.+.+|++|++++|.+... | ..+..+++|++|++++| .+..++...++
T Consensus 89 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~ 166 (310)
T 4glp_A 89 AYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVR 166 (310)
T ss_dssp HHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCC
T ss_pred ccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhc
Confidence 3467999999999 8875777777 8899999999999988742 2 34567999999999998 77777765588
Q ss_pred cCccCcEEEeccCcccccccccccccccCCcccc--cccccCccCCceEEEEecCchhhH
Q 039149 267 NSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVL--IQELLGLKYLEVLELTLGSYHALQ 324 (536)
Q Consensus 267 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~ 324 (536)
++++|++|++++|.... .... ...+..+++|++|.++.+....++
T Consensus 167 ~l~~L~~L~Ls~N~l~~-------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLG-------------ERGLMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp CCTTCCEEECCSCTTCH-------------HHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred cCCCCCEEECCCCCCcc-------------chhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 99999999999987542 1011 122356677777777766554443
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=1.1e-16 Score=169.78 Aligned_cols=302 Identities=16% Similarity=0.185 Sum_probs=156.2
Q ss_pred ccccceEEEeecCCccc-----ccCC-CCCCCcceEeccccc-chh-cchhHHhcCCCcccEEEeeccccccccCccccc
Q 039149 147 RWENVRRLSLMQNQIET-----LSEV-PTCPHLLTLFLDFNE-NLN-MIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMS 218 (536)
Q Consensus 147 ~~~~l~~L~l~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~-~l~-~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~ 218 (536)
.+++++.|++.++.+.. ++.. ..+++|++|++++|. .+. .....++..+++|++|++++|..+. .+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHh
Confidence 45678888888776443 2222 467788888888764 111 1112224557888888888875555 5666677
Q ss_pred CCCCCceEeeccCC-------Cc------------------------ccchhccCCCCCcEEeccCCCCCCcc-chHHhh
Q 039149 219 KLGSLELLDVSHTG-------IR------------------------ELPEELKLLVNLKCLTLRWTFELNKI-PRQLIS 266 (536)
Q Consensus 219 ~L~~L~~L~L~~~~-------i~------------------------~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~~i~ 266 (536)
++++|++|++.++. +. .+|..+..+++|++|++++|. ++.. ....+.
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~ 311 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLC 311 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHT
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHh
Confidence 77777777754431 11 233333345666666666653 3321 111244
Q ss_pred cCccCcEEEeccCcccccccccccccccCCcccccccc-cCccCCceEEEEec---------Cc--hhhHHHhcCccccc
Q 039149 267 NSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQEL-LGLKYLEVLELTLG---------SY--HALQILLSSNKLKS 334 (536)
Q Consensus 267 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~---------~~--~~~~~l~~~~~~~~ 334 (536)
++++|++|++.+| ... ..+..+ ..+++|+.|++... .. ..+..+.. ..+
T Consensus 312 ~~~~L~~L~l~~~-~~~---------------~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~---~~~ 372 (594)
T 2p1m_B 312 QCPKLQRLWVLDY-IED---------------AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM---GCP 372 (594)
T ss_dssp TCTTCCEEEEEGG-GHH---------------HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH---HCT
T ss_pred cCCCcCEEeCcCc-cCH---------------HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH---hch
Confidence 5666666666655 211 112211 23555666665321 11 11111111 112
Q ss_pred cceeEeecccCCcceecccccc-cccccccceecc-----cccccceeecccccccccccCCcccCCccEEEeecCCCCc
Q 039149 335 CIRSLFLQLAGDATSIVDATAF-ADLNHLNELYIN-----KGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLK 408 (536)
Q Consensus 335 ~L~~L~l~~~~~~~~~~~~~~l-~~~~~L~~L~l~-----~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 408 (536)
+|+.|.+ +|..++..... .+ ..+++|++|+++ +|..+...+.+..- ...+ ..+++|+.|++++ .++
T Consensus 373 ~L~~L~~-~~~~l~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~-~~l~---~~~~~L~~L~L~~--~l~ 444 (594)
T 2p1m_B 373 KLESVLY-FCRQMTNAALI-TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF-GAIV---EHCKDLRRLSLSG--LLT 444 (594)
T ss_dssp TCCEEEE-EESCCCHHHHH-HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH-HHHH---HHCTTCCEEECCS--SCC
T ss_pred hHHHHHH-hcCCcCHHHHH-HHHhhCCCcceeEeecccCCCcccccCCchhhHH-HHHH---hhCCCccEEeecC--ccc
Confidence 5566633 33333332221 22 246677777776 34444433221000 0000 1566777777755 333
Q ss_pred C--Cccccc-CCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccccccccccc--CCCcCCCccceEe
Q 039149 409 D--STFLVF-APNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSIH--WKPLPFTHLKEMG 483 (536)
Q Consensus 409 ~--l~~l~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~--~~~~~~~~L~~L~ 483 (536)
+ +..++. +++|+.|++++|..-...+. .....+++|+.|+|++|+. .... .....+++|+.|+
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLW 512 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEE
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEe
Confidence 2 233333 77888888887753222211 0114578888888888864 3221 1234578888888
Q ss_pred eccCCC
Q 039149 484 VRACDQ 489 (536)
Q Consensus 484 i~~C~~ 489 (536)
+++|+.
T Consensus 513 l~~~~~ 518 (594)
T 2p1m_B 513 MSSCSV 518 (594)
T ss_dssp EESSCC
T ss_pred eeCCCC
Confidence 888865
No 93
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=1.5e-16 Score=168.68 Aligned_cols=302 Identities=15% Similarity=0.090 Sum_probs=178.0
Q ss_pred ccccceEEEeecC-Cccc--ccCC-CCCCCcceEecccccchhcchh----HHhcCCCcccEEEeecccc--ccc-cCcc
Q 039149 147 RWENVRRLSLMQN-QIET--LSEV-PTCPHLLTLFLDFNENLNMIAD----GFFQLMPSLKVLKMSNCVN--LTL-KLPL 215 (536)
Q Consensus 147 ~~~~l~~L~l~~~-~~~~--l~~~-~~~~~Lr~L~l~~~~~l~~~~~----~~~~~l~~Lr~L~L~~~~~--i~~-~lp~ 215 (536)
.+.+++.|++.++ .+.. ++.. ..+++|++|++++|. ++.... .+...+++|++|+++++ . +.+ .++.
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~l~~ 205 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCL-ASEVSFSALER 205 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTC-CSCCCHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEeccc-CCcCCHHHHHH
Confidence 3579999999987 4433 3333 478999999999874 443221 22447889999999998 4 220 2223
Q ss_pred cccCCCCCceEeeccC-CCcccchhccCCCCCcEEeccCCCC------CCccchH-----------------------Hh
Q 039149 216 GMSKLGSLELLDVSHT-GIRELPEELKLLVNLKCLTLRWTFE------LNKIPRQ-----------------------LI 265 (536)
Q Consensus 216 ~i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~l~~~~~------l~~lp~~-----------------------~i 265 (536)
-+.++++|++|++++| .+..+|..+..+++|++|++..+.. +..++.. .+
T Consensus 206 l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~ 285 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY 285 (594)
T ss_dssp HHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH
T ss_pred HHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHH
Confidence 3456899999999999 7778888899999999998765421 1112221 12
Q ss_pred hcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecc--
Q 039149 266 SNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQL-- 343 (536)
Q Consensus 266 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~-- 343 (536)
..+++|++|++++|.... .....-+..+++|+.|.+..+ . ....+.......++|+.|++.+
T Consensus 286 ~~~~~L~~L~L~~~~l~~--------------~~l~~~~~~~~~L~~L~l~~~-~-~~~~l~~l~~~~~~L~~L~L~~~~ 349 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQS--------------YDLVKLLCQCPKLQRLWVLDY-I-EDAGLEVLASTCKDLRELRVFPSE 349 (594)
T ss_dssp HHHTTCCEEECTTCCCCH--------------HHHHHHHTTCTTCCEEEEEGG-G-HHHHHHHHHHHCTTCCEEEEECSC
T ss_pred HhhCCCCEEEccCCCCCH--------------HHHHHHHhcCCCcCEEeCcCc-c-CHHHHHHHHHhCCCCCEEEEecCc
Confidence 345666666666665321 112222456677777777754 1 1111221111123677777743
Q ss_pred ------cCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEee-----cCCCCcCCcc
Q 039149 344 ------AGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIW-----RCAKLKDSTF 412 (536)
Q Consensus 344 ------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~-----~c~~l~~l~~ 412 (536)
+..++..........+++|++|.+. |..+......... ..+++|+.|++. +|..++..+.
T Consensus 350 ~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~--------~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 350 PFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIA--------RNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp TTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHH--------HHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred ccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHH--------hhCCCcceeEeecccCCCcccccCCch
Confidence 2333322221112346777777543 3333322111110 047888999888 5666664332
Q ss_pred -------cccCCCccEEEEecCchhhhhhccCCcCCccccccCC-CCCCccceeccccccccccccC--CCcCCCccceE
Q 039149 413 -------LVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHM-SPFENLQRLHVEDLPDLKSIHW--KPLPFTHLKEM 482 (536)
Q Consensus 413 -------l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~L~~~~~--~~~~~~~L~~L 482 (536)
+..+++|+.|++++ .+..... ..+ ..+++|+.|++.+|. +..... ....+++|+.|
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~--~l~~~~~-----------~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L 486 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG--LLTDKVF-----------EYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKL 486 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS--SCCHHHH-----------HHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEE
T ss_pred hhHHHHHHhhCCCccEEeecC--cccHHHH-----------HHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEE
Confidence 45778899998866 2222211 011 237889999999885 322111 11348999999
Q ss_pred eeccCCC
Q 039149 483 GVRACDQ 489 (536)
Q Consensus 483 ~i~~C~~ 489 (536)
++++|+-
T Consensus 487 ~L~~n~~ 493 (594)
T 2p1m_B 487 EIRDCPF 493 (594)
T ss_dssp EEESCSC
T ss_pred ECcCCCC
Confidence 9999974
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=5e-15 Score=138.66 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=124.2
Q ss_pred ccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccC-cccccCCCCCceEe
Q 039149 149 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLGSLELLD 227 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~~L~~L~ 227 (536)
...+++++.++.++.+|.... ++++.|++++| .+..++...+.++++|++|+++++ .++ .+ |..++.+.+|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYN-QLQ-TLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCC-cCC-ccCHhHhccCCcCCEEE
Confidence 356789999999998887533 78999999977 677777766899999999999999 898 55 45588999999999
Q ss_pred eccCCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccC
Q 039149 228 VSHTGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLG 306 (536)
Q Consensus 228 L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (536)
+++|.+..+|.. ++.+++|++|++++| .++.+|.+.+.++++|++|++++|.+.. .....+..
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~ 153 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQS---------------IPAGAFDK 153 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTT
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCc---------------cCHHHcCc
Confidence 999999988854 689999999999998 8899998767899999999999997754 22335667
Q ss_pred ccCCceEEEEecC
Q 039149 307 LKYLEVLELTLGS 319 (536)
Q Consensus 307 l~~L~~L~l~~~~ 319 (536)
+++|+.|+++.+.
T Consensus 154 l~~L~~L~L~~N~ 166 (251)
T 3m19_A 154 LTNLQTLSLSTNQ 166 (251)
T ss_dssp CTTCCEEECCSSC
T ss_pred CcCCCEEECCCCc
Confidence 7777777766543
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=9.1e-16 Score=153.45 Aligned_cols=243 Identities=15% Similarity=0.115 Sum_probs=127.5
Q ss_pred chhcchhHHhcCCCcccEEEeecccccccc----CcccccCCCCCceEeeccCCCc----ccchhc-------cCCCCCc
Q 039149 183 NLNMIADGFFQLMPSLKVLKMSNCVNLTLK----LPLGMSKLGSLELLDVSHTGIR----ELPEEL-------KLLVNLK 247 (536)
Q Consensus 183 ~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~----lp~~i~~L~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~ 247 (536)
.+..++.. +..+++|++|+|++| .+.+. ++..+..+++|++|++++|.+. .+|.++ ..+++|+
T Consensus 20 ~~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 20 DEKSVFAV-LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp HHHTTSHH-HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHH-HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 34444444 566667777777776 55522 2333556777777777765433 233333 5667777
Q ss_pred EEeccCCCCCCc-----cchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCc---------cCCceE
Q 039149 248 CLTLRWTFELNK-----IPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGL---------KYLEVL 313 (536)
Q Consensus 248 ~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~~L 313 (536)
+|++++| .++. +|.. +.++++|++|++++|.+.... .......+..+ ++|+.|
T Consensus 98 ~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~-----------~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 98 TVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQA-----------GAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp EEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHH-----------HHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred EEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHH-----------HHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 7777776 4444 4543 666777777777776654200 00111123333 667777
Q ss_pred EEEecCch--hhHHHhcCccccccceeEeecccCCcceec---ccc-cccccccccceeccccccc----ceeecccccc
Q 039149 314 ELTLGSYH--ALQILLSSNKLKSCIRSLFLQLAGDATSIV---DAT-AFADLNHLNELYINKGFEL----EELKIDYTEI 383 (536)
Q Consensus 314 ~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~---~~~-~l~~~~~L~~L~l~~~~~l----~~l~~~~~~~ 383 (536)
.++.+... .++.+.......++|+.|+++++.- .... ..+ .+..+++|++|++++|.-- ..++...
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l--- 240 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI-RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL--- 240 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC-CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG---
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCC-CHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH---
Confidence 76665543 3333322222223667777766532 2110 111 4556667777777766311 1121111
Q ss_pred cccccCCcccCCccEEEeecCCCCcCC------ccc--ccCCCccEEEEecCchhh----hhhccCCcCCccccccCC-C
Q 039149 384 VRKRREPFVFRSLHHVTIWRCAKLKDS------TFL--VFAPNLKSLVLRNCHAME----EIISVGKFSEVPEMMRHM-S 450 (536)
Q Consensus 384 ~~~~~~~~~~~~L~~L~l~~c~~l~~l------~~l--~~l~~L~~L~l~~c~~l~----~~~~~~~~~~~~~~~~~~-~ 450 (536)
..+++|+.|+|++| .++.. ..+ +.+++|+.|+|++|..-. .++. .+ .
T Consensus 241 -------~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~------------~l~~ 300 (386)
T 2ca6_A 241 -------KSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT------------VIDE 300 (386)
T ss_dssp -------GGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH------------HHHH
T ss_pred -------ccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH------------HHHh
Confidence 15567777777777 44432 122 236777777777764333 2432 22 3
Q ss_pred CCCccceecccccc
Q 039149 451 PFENLQRLHVEDLP 464 (536)
Q Consensus 451 ~~~~L~~L~l~~~~ 464 (536)
.+++|++|++.+++
T Consensus 301 ~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 301 KMPDLLFLELNGNR 314 (386)
T ss_dssp HCTTCCEEECTTSB
T ss_pred cCCCceEEEccCCc
Confidence 46777777777763
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=6.3e-16 Score=162.29 Aligned_cols=121 Identities=17% Similarity=0.271 Sum_probs=70.3
Q ss_pred ceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeecc
Q 039149 151 VRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSH 230 (536)
Q Consensus 151 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~ 230 (536)
+..+.+..+.+..+.....+++|+.|++++| .+..++. +..+++|++|+|++| .+. .+|. ++.+.+|++|+|++
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N-~l~-~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGN-KLT-DIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTS-CCC-CCGG-GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCC-CCC-CChh-hccCCCCCEEECcC
Confidence 3333444444444444455566666666644 4555543 566666666666666 666 5554 66666666666666
Q ss_pred CCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcc
Q 039149 231 TGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGL 281 (536)
Q Consensus 231 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 281 (536)
|.+..+| .+..+++|++|++++| .+..+|. +..+++|+.|++++|.+
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKI 143 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSSCC
T ss_pred CCCCCCh-hhccCCCCCEEEecCC-CCCCCcc--ccCCCccCEEECCCCcc
Confidence 6666554 5666666666666665 5555543 56666666666666544
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=3e-14 Score=136.36 Aligned_cols=165 Identities=23% Similarity=0.363 Sum_probs=144.0
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNL 209 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i 209 (536)
..+...+..+..++.+..+.+++.|++.+|.+..++....+++|++|++++| .++.++. +..+++|++|++++| .+
T Consensus 49 ~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n-~i 124 (291)
T 1h6t_A 49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSLEHN-GI 124 (291)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCGGG--GTTCTTCCEEECTTS-CC
T ss_pred cEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCC-cCCCChh--hccCCCCCEEECCCC-cC
Confidence 4566666677777888888999999999999999888889999999999987 6777766 899999999999999 99
Q ss_pred cccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccc
Q 039149 210 TLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASE 289 (536)
Q Consensus 210 ~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 289 (536)
. .++ .++.+++|++|++++|.+..+ ..++.+++|++|++++| .++.++. +..+++|++|++++|.+..
T Consensus 125 ~-~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~~------ 192 (291)
T 1h6t_A 125 S-DIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD------ 192 (291)
T ss_dssp C-CCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB------
T ss_pred C-CCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCCC------
Confidence 8 774 689999999999999999988 57999999999999998 8888887 8999999999999997753
Q ss_pred cccccCCcccccccccCccCCceEEEEecCch
Q 039149 290 DSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 321 (536)
Q Consensus 290 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 321 (536)
+..+..+++|+.|+++.+...
T Consensus 193 -----------l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 -----------LRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -----------CGGGTTCTTCSEEEEEEEEEE
T ss_pred -----------ChhhccCCCCCEEECcCCccc
Confidence 345888899999998876543
No 98
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.58 E-value=2.2e-16 Score=164.76 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=90.3
Q ss_pred hHHHHHHHHHccccccCCchhhhHHHHHHhhcCCCchhHhHHHh-----------hcccCCCCcccCHHHHHHHHHHh--
Q 039149 5 HWRRAIEELRRSASEFAGLGKEVYPLLKFSYDSLQNETIRSCFL-----------YCCLYPEDYGILKWDLIDCWIGE-- 71 (536)
Q Consensus 5 ~W~~~~~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~lk~cFl-----------~~a~fp~~~~i~~~~Li~~Wia~-- 71 (536)
.|+.+ +.+.+..+... .++|.++|++||++||+ ++|.||+ |||+||+|+.|+ +++|+|+
T Consensus 344 ~w~~~-~~l~~~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~ 415 (549)
T 2a5y_B 344 TFEKM-AQLNNKLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIP 415 (549)
T ss_dssp SHHHH-HHHHHHHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSC
T ss_pred hHHHH-HHhHHHhhccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeecc
Confidence 57665 66776655432 23799999999999999 9999999 999999999998 8999999
Q ss_pred CCCCCCc-hhcHHHHHHHHHHHHHhcCccccc---CCCeEEehHHHHHHHHHHhcccc
Q 039149 72 GFLGESD-RFGAENQGYDILDTLVRACLLEEV---EDDEVKMHDVVRDMALWITCEIE 125 (536)
Q Consensus 72 g~i~~~~-~~~~~~~~~~~~~~L~~~sl~~~~---~~~~~~mhdli~dl~~~i~~~~~ 125 (536)
||+.... +..++++++ ||++|+++||++.. ....|+|||+||++|+.++++++
T Consensus 416 G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 416 VDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp C-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred ceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9998844 677888888 99999999999976 34689999999999999987643
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=8.5e-15 Score=153.73 Aligned_cols=174 Identities=21% Similarity=0.300 Sum_probs=132.9
Q ss_pred cCccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCC
Q 039149 141 EAPDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKL 220 (536)
Q Consensus 141 ~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L 220 (536)
.+.....+.+++.|++.++.+..++....+++|+.|+|++| .+..++. +..+++|++|+|++| .+. .+| .++.+
T Consensus 35 ~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N-~l~-~l~-~l~~l 108 (605)
T 1m9s_A 35 DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDEN-KIK-DLS-SLKDL 108 (605)
T ss_dssp SEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSS-CCC-CCT-TSTTC
T ss_pred cccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCC-CCC-CCh-hhccC
Confidence 33444556788888888888888887788889999999876 6777776 788889999999988 888 666 68888
Q ss_pred CCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccc
Q 039149 221 GSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVL 300 (536)
Q Consensus 221 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 300 (536)
.+|++|+|++|.+..+| .+..+++|+.|++++| .+..++. ++.+++|+.|++++|.+.. .
T Consensus 109 ~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~----------------~ 168 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISD----------------I 168 (605)
T ss_dssp TTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCC----------------C
T ss_pred CCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCC----------------c
Confidence 99999999998888875 5888889999999887 7777754 8888999999998887653 1
Q ss_pred cccccCccCCceEEEEecCchhhHHHhcCccccccceeEeecccC
Q 039149 301 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAG 345 (536)
Q Consensus 301 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 345 (536)
..+..+++|+.|+++.+....++.+.. .++|+.|+|+++.
T Consensus 169 -~~l~~l~~L~~L~Ls~N~i~~l~~l~~----l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 169 -VPLAGLTKLQNLYLSKNHISDLRALAG----LKNLDVLELFSQE 208 (605)
T ss_dssp -GGGTTCTTCCEEECCSSCCCBCGGGTT----CTTCSEEECCSEE
T ss_pred -hhhccCCCCCEEECcCCCCCCChHHcc----CCCCCEEEccCCc
Confidence 127778888888888776665543222 2367777777653
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=5.9e-15 Score=146.10 Aligned_cols=239 Identities=15% Similarity=0.150 Sum_probs=127.9
Q ss_pred CCCCcceEecccccchhcchh----HHhcCCC-cccEEEeeccccccccCcccccCC-----CCCceEeeccCCCcccch
Q 039149 169 TCPHLLTLFLDFNENLNMIAD----GFFQLMP-SLKVLKMSNCVNLTLKLPLGMSKL-----GSLELLDVSHTGIRELPE 238 (536)
Q Consensus 169 ~~~~Lr~L~l~~~~~l~~~~~----~~~~~l~-~Lr~L~L~~~~~i~~~lp~~i~~L-----~~L~~L~L~~~~i~~lp~ 238 (536)
..++|++|++++| .++..+. ..+..++ +|++|++++| .+.+..+..++.+ .+|++|++++|.+...+.
T Consensus 20 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 20 IPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp SCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3344777777765 4555553 4466666 6777777777 6663334445443 677777777776664432
Q ss_pred h-----ccCC-CCCcEEeccCCCCCCccchHHhhc-----CccCcEEEeccCcccccccccccccccCCcccccccccCc
Q 039149 239 E-----LKLL-VNLKCLTLRWTFELNKIPRQLISN-----SSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGL 307 (536)
Q Consensus 239 ~-----i~~L-~~L~~L~l~~~~~l~~lp~~~i~~-----l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 307 (536)
. +..+ ++|++|++++| .++..+...+.. .++|++|++++|..... ........+..+
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-----------~~~~l~~~l~~~ 165 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-----------SSDELIQILAAI 165 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-----------CHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-----------HHHHHHHHHhcC
Confidence 2 3344 67777777776 555555432322 24677777777655420 000111222223
Q ss_pred cCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceec--cccccccc-ccccceecccccccceeeccccccc
Q 039149 308 KYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIV--DATAFADL-NHLNELYINKGFELEELKIDYTEIV 384 (536)
Q Consensus 308 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~~-~~L~~L~l~~~~~l~~l~~~~~~~~ 384 (536)
+ .+|+.|+++++.-..... +...+... ++|++|++++|. +........ +
T Consensus 166 ~-------------------------~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l--~ 217 (362)
T 3goz_A 166 P-------------------------ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAEL--A 217 (362)
T ss_dssp C-------------------------TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHH--H
T ss_pred C-------------------------ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHH--H
Confidence 2 144455554442111110 00123334 478888887773 333111100 0
Q ss_pred ccccCCcccCCccEEEeecCCCCcCCcc------cccCCCccEEEEecCc-------hhhhhhccCCcCCccccccCCCC
Q 039149 385 RKRREPFVFRSLHHVTIWRCAKLKDSTF------LVFAPNLKSLVLRNCH-------AMEEIISVGKFSEVPEMMRHMSP 451 (536)
Q Consensus 385 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~------l~~l~~L~~L~l~~c~-------~l~~~~~~~~~~~~~~~~~~~~~ 451 (536)
..+. ...++|+.|+|++| .+...+. +..+++|+.|++++|. .+..+. .....
T Consensus 218 ~~l~--~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~------------~~~~~ 282 (362)
T 3goz_A 218 YIFS--SIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG------------AAFPN 282 (362)
T ss_dssp HHHH--HSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH------------TTSTT
T ss_pred HHHh--cCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH------------HHhcc
Confidence 0000 02458888888888 5665432 3567888999988875 122332 25567
Q ss_pred CCccceecccccc
Q 039149 452 FENLQRLHVEDLP 464 (536)
Q Consensus 452 ~~~L~~L~l~~~~ 464 (536)
+++|+.|++++.+
T Consensus 283 l~~L~~LdL~~N~ 295 (362)
T 3goz_A 283 IQKIILVDKNGKE 295 (362)
T ss_dssp CCEEEEECTTSCB
T ss_pred CCceEEEecCCCc
Confidence 7888888888763
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=1.8e-14 Score=132.71 Aligned_cols=145 Identities=27% Similarity=0.368 Sum_probs=86.5
Q ss_pred EEecCCCcccCccccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccc
Q 039149 132 LVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNL 209 (536)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i 209 (536)
+.+.+..+..+|.... .+++.|++.+|.+..++.. ..+++|++|++++| .++.++...+..+++|++|+|+++ .+
T Consensus 24 v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l 100 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QL 100 (229)
T ss_dssp EECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred eEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cC
Confidence 3444445555554322 5666666666666655332 45666666666655 455565555566666666666666 66
Q ss_pred cccCccc-ccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcc
Q 039149 210 TLKLPLG-MSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGL 281 (536)
Q Consensus 210 ~~~lp~~-i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 281 (536)
+ .+|.. ++.+.+|++|++++|.+..+|..+..+++|++|++++| .++.+|.+.+..+++|++|++.++..
T Consensus 101 ~-~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 101 T-VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred C-ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 6 55433 45566666666666666666666666666666666665 56666654456666666666666544
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=2.9e-14 Score=128.11 Aligned_cols=146 Identities=16% Similarity=0.240 Sum_probs=125.6
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhc-chhHHhcCCCcccEEEeecccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNM-IADGFFQLMPSLKVLKMSNCVN 208 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~-~~~~~~~~l~~Lr~L~L~~~~~ 208 (536)
..+...+..+..++....+.+++.|++.+|.+..++....+++|++|++++| .++. .+.. +..+++|++|++++| .
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~~L~~L~Ls~n-~ 123 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK-DVTSDKIPN-LSGLTSLTLLDISHS-A 123 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT-TCBGGGSCC-CTTCTTCCEEECCSS-B
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC-ccCcccChh-hcCCCCCCEEEecCC-c
Confidence 4566677777788888888999999999999888888899999999999987 5554 3444 889999999999999 8
Q ss_pred ccccCcccccCCCCCceEeeccCC-CcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccc
Q 039149 209 LTLKLPLGMSKLGSLELLDVSHTG-IRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 209 i~~~lp~~i~~L~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
+.+..|..++.+++|++|++++|. +..+| .+..+++|++|++++| .++.++. +..+++|++|++.++.+.
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC---
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccC
Confidence 884578889999999999999997 98987 7999999999999998 7888884 999999999999998764
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=4.1e-14 Score=133.24 Aligned_cols=156 Identities=22% Similarity=0.265 Sum_probs=130.3
Q ss_pred CcccCccccccccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccc
Q 039149 138 GLKEAPDVKRWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGM 217 (536)
Q Consensus 138 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i 217 (536)
.+..++....+.+++.|++.++.+..++....+++|++|++++| .++.++. +..+++|++|+++++ .++ .+|...
T Consensus 30 ~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N-~l~-~l~~~~ 104 (263)
T 1xeu_A 30 SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRN-RLK-NLNGIP 104 (263)
T ss_dssp CTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSS-CCS-CCTTCC
T ss_pred CcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCC-ccC-CcCccc
Confidence 44455556667899999999999998887788999999999977 7888877 889999999999999 898 787643
Q ss_pred cCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCc
Q 039149 218 SKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGG 297 (536)
Q Consensus 218 ~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 297 (536)
. .+|++|++++|.+..+| .++.+++|++|++++| .++.+|. ++.+++|++|++++|.+..
T Consensus 105 ~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~-------------- 164 (263)
T 1xeu_A 105 S--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITN-------------- 164 (263)
T ss_dssp C--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCB--------------
T ss_pred c--CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcc--------------
Confidence 3 99999999999998886 6889999999999998 7888874 8999999999999988753
Q ss_pred ccccccccCccCCceEEEEecCch
Q 039149 298 EVLIQELLGLKYLEVLELTLGSYH 321 (536)
Q Consensus 298 ~~~~~~l~~l~~L~~L~l~~~~~~ 321 (536)
+..+..+++|+.|+++.+...
T Consensus 165 ---~~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 ---TGGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ---CTTSTTCCCCCEEEEEEEEEE
T ss_pred ---hHHhccCCCCCEEeCCCCccc
Confidence 266778888888888876543
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=2.3e-14 Score=138.67 Aligned_cols=132 Identities=20% Similarity=0.132 Sum_probs=94.7
Q ss_pred ccceEEEeecCCccccc-CC---CCCCCcceEecccccchhc----chhHHhcCCCcccEEEeeccccccccCcccccCC
Q 039149 149 ENVRRLSLMQNQIETLS-EV---PTCPHLLTLFLDFNENLNM----IADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKL 220 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~-~~---~~~~~Lr~L~l~~~~~l~~----~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L 220 (536)
.+++.|++.+|.+.... .. ..+++|++|++++| .+.. ++...+..+++|++|++++| .+.+..|..++.+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccC
Confidence 46888888888776533 22 56888889988877 4433 22233567888999999988 7873344678888
Q ss_pred CCCceEeeccCCCcc---cchh--ccCCCCCcEEeccCCCCCCccchH---HhhcCccCcEEEeccCcccc
Q 039149 221 GSLELLDVSHTGIRE---LPEE--LKLLVNLKCLTLRWTFELNKIPRQ---LISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 221 ~~L~~L~L~~~~i~~---lp~~--i~~L~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~~~~ 283 (536)
++|++|++++|.+.. ++.. ++.+++|++|++++| .++.+|.. .++.+++|++|++++|.+..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 899999998887653 4333 367888999999887 67766652 35678889999998887754
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=4e-14 Score=129.48 Aligned_cols=149 Identities=18% Similarity=0.252 Sum_probs=92.6
Q ss_pred eEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccC
Q 039149 152 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHT 231 (536)
Q Consensus 152 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~ 231 (536)
+.++..++.++.+|... .++|+.|++++| .++.++...|..+++|++|+|+++ .+.+..|..+..+.+|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555566555432 256777777755 566666544667777777777777 666223566777777777777777
Q ss_pred CCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCC
Q 039149 232 GIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYL 310 (536)
Q Consensus 232 ~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 310 (536)
.+..+|.. +..+++|++|++++| .++.++...+..+++|++|++++|.+.. .....+..+++|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L 154 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQT---------------IAKGTFSPLRAI 154 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC---------------CCTTTTTTCTTC
T ss_pred cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCE---------------ECHHHHhCCCCC
Confidence 77766655 466777777777776 5666654446677777777777766543 222335556666
Q ss_pred ceEEEEecC
Q 039149 311 EVLELTLGS 319 (536)
Q Consensus 311 ~~L~l~~~~ 319 (536)
+.|++..+.
T Consensus 155 ~~L~L~~N~ 163 (220)
T 2v9t_B 155 QTMHLAQNP 163 (220)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 666665443
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=5.9e-14 Score=128.40 Aligned_cols=148 Identities=26% Similarity=0.362 Sum_probs=127.7
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccC--CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCV 207 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~ 207 (536)
..+.+.+..+..+|.... .+++.|++.+|.+..++. ...+++|++|++++| .++.+++..|..+++|++|+|+++
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-
Confidence 456677777888876443 789999999999999875 378999999999987 777775555999999999999999
Q ss_pred cccccCccc-ccCCCCCceEeeccCCCcccc-hhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccc
Q 039149 208 NLTLKLPLG-MSKLGSLELLDVSHTGIRELP-EELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 208 ~i~~~lp~~-i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
.++ .+|.. +..+.+|++|++++|.+..++ ..+..+++|++|++++| .++.++.+.+..+++|++|++.+|...
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999 88876 578999999999999999874 56899999999999998 888888877899999999999998764
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.6e-13 Score=124.41 Aligned_cols=145 Identities=25% Similarity=0.395 Sum_probs=95.5
Q ss_pred EEecCCCcccCccccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccc
Q 039149 132 LVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNL 209 (536)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i 209 (536)
+.+.+.++..+|... ..+++.|++.++.+..++.. ..+++|++|++++| .++.++...+..+++|++|+++++ .+
T Consensus 12 v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l 88 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QL 88 (208)
T ss_dssp EECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cC
Confidence 444444555555322 25677777777777766553 56777777777765 566666655677777777777777 67
Q ss_pred cccCccc-ccCCCCCceEeeccCCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcc
Q 039149 210 TLKLPLG-MSKLGSLELLDVSHTGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGL 281 (536)
Q Consensus 210 ~~~lp~~-i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 281 (536)
+ .+|.. ++.+.+|++|++++|.+..+|.. +..+++|++|++++| .++.+|...+..+++|++|++.+|..
T Consensus 89 ~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 89 Q-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred C-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe
Confidence 6 55543 46677777777777777766654 566777777777776 66666665566777777777776644
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=126.62 Aligned_cols=147 Identities=18% Similarity=0.277 Sum_probs=74.8
Q ss_pred EEEeecCCcccccCCCCCCCcceEecccccchhcc-hhHHhcCCCcccEEEeeccccccccCcc-cccCCCCCceEeecc
Q 039149 153 RLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMI-ADGFFQLMPSLKVLKMSNCVNLTLKLPL-GMSKLGSLELLDVSH 230 (536)
Q Consensus 153 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~-~~~~~~~l~~Lr~L~L~~~~~i~~~lp~-~i~~L~~L~~L~L~~ 230 (536)
.+++.++.++.+|.. -.+.++.|++++| .++.+ +..++..+++|++|+++++ .++ .++. .++.+.+|++|++++
T Consensus 15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~-~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH-IPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KIT-DIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCC-EECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcccCccC-CCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCC-EECHHHhCCCCCCCEEECCC
Confidence 455555555554432 1234455555544 44444 2233455555555555555 555 3332 455555555555555
Q ss_pred CCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccC
Q 039149 231 TGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKY 309 (536)
Q Consensus 231 ~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 309 (536)
|.+..+|.. ++.+++|++|++++| .++.+++..+..+++|++|++++|.+.. .....+..+++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~ 154 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITT---------------VAPGAFDTLHS 154 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCC---------------BCTTTTTTCTT
T ss_pred CccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCE---------------ECHHHhcCCCC
Confidence 555555433 555555555555555 4454433335555555555555555443 22344445555
Q ss_pred CceEEEEecC
Q 039149 310 LEVLELTLGS 319 (536)
Q Consensus 310 L~~L~l~~~~ 319 (536)
|+.|+++.+.
T Consensus 155 L~~L~L~~N~ 164 (220)
T 2v70_A 155 LSTLNLLANP 164 (220)
T ss_dssp CCEEECCSCC
T ss_pred CCEEEecCcC
Confidence 5555555443
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=1.2e-13 Score=127.08 Aligned_cols=148 Identities=22% Similarity=0.282 Sum_probs=124.9
Q ss_pred ceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCccc-ccCCCCCceEeec
Q 039149 151 VRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLG-MSKLGSLELLDVS 229 (536)
Q Consensus 151 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~-i~~L~~L~~L~L~ 229 (536)
.+.++..++.+..+|... .++|++|++++| .+..++...+..+++|++|+|+++ .+. .+|.. ++.+.+|++|+|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N-~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSN-QLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCC-CCC-CcChhhcccCCCcCEEECC
Confidence 456888888888888753 389999999987 777776666899999999999999 898 88754 6889999999999
Q ss_pred cCCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCcc
Q 039149 230 HTGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLK 308 (536)
Q Consensus 230 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 308 (536)
+|.++.+|.. +..+++|++|++++| .++.+|.. +..+++|++|++++|.+.. .....+..++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~ 159 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKS---------------IPHGAFDRLS 159 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCC---------------CCTTTTTTCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCc---------------cCHHHHhCCC
Confidence 9999999866 689999999999998 89999987 8999999999999998764 2234577788
Q ss_pred CCceEEEEecC
Q 039149 309 YLEVLELTLGS 319 (536)
Q Consensus 309 ~L~~L~l~~~~ 319 (536)
+|+.|.+..+.
T Consensus 160 ~L~~L~l~~N~ 170 (229)
T 3e6j_A 160 SLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECTTSC
T ss_pred CCCEEEeeCCC
Confidence 88888887554
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=9.4e-14 Score=127.02 Aligned_cols=148 Identities=17% Similarity=0.246 Sum_probs=125.2
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccC---CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeecc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSE---VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNC 206 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 206 (536)
..+.+.+..+..+|... ...++.|++.+|.+..++. ...+++|++|++++| .++.++...|..+++|++|+|+++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 45667777777777543 3578999999999998844 368999999999977 788888766999999999999999
Q ss_pred ccccccCcc-cccCCCCCceEeeccCCCccc-chhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccc
Q 039149 207 VNLTLKLPL-GMSKLGSLELLDVSHTGIREL-PEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 207 ~~i~~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
.++ .+|. .++.+.+|++|++++|.+..+ |..+..+++|++|++++| .++.+++..+..+++|++|++.+|...
T Consensus 92 -~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 -RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp -CCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred -ccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 998 6654 588999999999999999987 567999999999999998 788885555999999999999998764
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=6.5e-15 Score=145.82 Aligned_cols=253 Identities=14% Similarity=0.052 Sum_probs=152.3
Q ss_pred EecccccchhcchhHHhcCCCcccEEEeeccccccccCc-----ccccCCC-CCceEeeccCCCccc-chhccCC-----
Q 039149 176 LFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLP-----LGMSKLG-SLELLDVSHTGIREL-PEELKLL----- 243 (536)
Q Consensus 176 L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp-----~~i~~L~-~L~~L~L~~~~i~~l-p~~i~~L----- 243 (536)
+.++.+ .++...+.++...++|++|++++| .+. ..+ ..+..++ +|++|++++|.+... +..+..+
T Consensus 3 ~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n-~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLH-PGSNPVEEFTSIPHGVTSLDLSLN-NLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCC-TTCCHHHHHHTSCTTCCEEECTTS-CGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccc-cchHHHHHHHhCCCCceEEEccCC-CCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 345544 555555555666677888888888 777 544 5566777 888888888877754 3445554
Q ss_pred CCCcEEeccCCCCCCccchHHhhc----C-ccCcEEEeccCcccccccccccccccCCccccccc----ccCc-cCCceE
Q 039149 244 VNLKCLTLRWTFELNKIPRQLISN----S-SRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQE----LLGL-KYLEVL 313 (536)
Q Consensus 244 ~~L~~L~l~~~~~l~~lp~~~i~~----l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~l-~~L~~L 313 (536)
++|++|++++| .++..+...+.. + ++|++|++++|.+.. ..... +..+ +
T Consensus 80 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~---------------~~~~~l~~~l~~~~~----- 138 (362)
T 3goz_A 80 ANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS---------------KSSSEFKQAFSNLPA----- 138 (362)
T ss_dssp TTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG---------------SCHHHHHHHHTTSCT-----
T ss_pred CCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCc---------------HHHHHHHHHHHhCCC-----
Confidence 88888888887 566544432333 3 788888888887653 11111 2221 3
Q ss_pred EEEecCchhhHHHhcCccccccceeEeecccCCccee--cccccccccc-cccceecccccccceeecccccccccccCC
Q 039149 314 ELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSI--VDATAFADLN-HLNELYINKGFELEELKIDYTEIVRKRREP 390 (536)
Q Consensus 314 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~l~~~~-~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 390 (536)
+|+.|+++++.-.... .+...+..++ +|++|++++| .+......... ..+.
T Consensus 139 ---------------------~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~--~~l~-- 192 (362)
T 3goz_A 139 ---------------------SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELA--KFLA-- 192 (362)
T ss_dssp ---------------------TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHH--HHHH--
T ss_pred ---------------------ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHH--HHHH--
Confidence 4445555543211100 0011334454 9999999998 44433321110 0000
Q ss_pred ccc-CCccEEEeecCCCCcC-----Cc-cccc-CCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccc
Q 039149 391 FVF-RSLHHVTIWRCAKLKD-----ST-FLVF-APNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVED 462 (536)
Q Consensus 391 ~~~-~~L~~L~l~~c~~l~~-----l~-~l~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 462 (536)
.+ ++|+.|+|++| .+.. ++ .+.. .++|+.|++++|.. +..+. ..+......+++|+.|++++
T Consensus 193 -~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~-------~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 193 -SIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCL-HGPSL-------ENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp -TSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCC-CCCCH-------HHHHHTTTTTTTCSEEEEEH
T ss_pred -hCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCC-CcHHH-------HHHHHHHhcCCCccEEEecc
Confidence 33 69999999999 5665 22 2334 46999999999743 22211 01112456789999999998
Q ss_pred cc-------ccccccCCCcCCCccceEeeccCC
Q 039149 463 LP-------DLKSIHWKPLPFTHLKEMGVRACD 488 (536)
Q Consensus 463 ~~-------~L~~~~~~~~~~~~L~~L~i~~C~ 488 (536)
+. .+..+......+++|+.|++++.+
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 84 133444455567889999998864
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=2.2e-14 Score=135.13 Aligned_cols=145 Identities=23% Similarity=0.253 Sum_probs=113.8
Q ss_pred cccceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEe
Q 039149 148 WENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLD 227 (536)
Q Consensus 148 ~~~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~ 227 (536)
+.++..+.+..+.++.++....+++|++|++++| .++.++. +..+++|++|+++++ .++ .+|. ++++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~L~~N-~i~-~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHN-QIS-DLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCC-CCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCC-CcccchH--HhhCCCCCEEECCCC-ccC-CChh-hccCCCCCEEE
Confidence 4556666777778877776678889999999977 7777773 788999999999999 888 7776 88899999999
Q ss_pred eccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCc
Q 039149 228 VSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGL 307 (536)
Q Consensus 228 L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 307 (536)
+++|.+..+|.... .+|++|++++| .++.+|. ++++++|++|++++|.+.. +..+..+
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~-----------------~~~l~~l 149 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKS-----------------IVMLGFL 149 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCB-----------------CGGGGGC
T ss_pred CCCCccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCC-----------------ChHHccC
Confidence 99998888875433 88999999998 7888875 8899999999999887653 2356667
Q ss_pred cCCceEEEEecCc
Q 039149 308 KYLEVLELTLGSY 320 (536)
Q Consensus 308 ~~L~~L~l~~~~~ 320 (536)
++|+.|+++.+..
T Consensus 150 ~~L~~L~L~~N~i 162 (263)
T 1xeu_A 150 SKLEVLDLHGNEI 162 (263)
T ss_dssp TTCCEEECTTSCC
T ss_pred CCCCEEECCCCcC
Confidence 7777766654443
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=3.5e-13 Score=122.16 Aligned_cols=147 Identities=24% Similarity=0.321 Sum_probs=119.0
Q ss_pred eEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCccc-ccCCCCCceEeecc
Q 039149 152 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLG-MSKLGSLELLDVSH 230 (536)
Q Consensus 152 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~-i~~L~~L~~L~L~~ 230 (536)
+.+...++.+..+|.. -.++|++|++++| .++.++...+..+++|++|+++++ .++ .+|.. ++.+.+|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccC-ccChhhcCCCCCcCEEECCC
Confidence 4677777777777754 3568999999987 778888877899999999999999 999 77654 58899999999999
Q ss_pred CCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccC
Q 039149 231 TGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKY 309 (536)
Q Consensus 231 ~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 309 (536)
|.+..+|.. ++.+++|++|++++| .++.+|...+.++++|++|++++|.+.. .....+..+++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~---------------~~~~~~~~l~~ 149 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKS---------------VPDGVFDRLTS 149 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC---------------CCTTTTTTCTT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccce---------------eCHHHhccCCC
Confidence 999988865 689999999999998 7888888767899999999999987654 22233566666
Q ss_pred CceEEEEec
Q 039149 310 LEVLELTLG 318 (536)
Q Consensus 310 L~~L~l~~~ 318 (536)
|+.|+++.+
T Consensus 150 L~~L~l~~N 158 (208)
T 2o6s_A 150 LQYIWLHDN 158 (208)
T ss_dssp CCEEECCSC
T ss_pred ccEEEecCC
Confidence 766666543
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=1.6e-13 Score=135.72 Aligned_cols=149 Identities=26% Similarity=0.396 Sum_probs=118.7
Q ss_pred eEEEecCCCcccCccccccccceEEEeecCCcccccCC--C-CCCCcceEecccccchhcchhHHhcCCCcccEEEeecc
Q 039149 130 NFLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEV--P-TCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNC 206 (536)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~-~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~ 206 (536)
+.+.+.+..+..+|.... ..++.|++.+|.+..++.. . .+++|++|++++| .++.++...|..+++|++|+|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence 456667777777775433 5688999999998887765 3 7899999999976 777887666889999999999999
Q ss_pred ccccccCcc-cccCCCCCceEeeccCCCccc-chhccCCCCCcEEeccCCCCCCccchHHh---hcCccCcEEEeccCcc
Q 039149 207 VNLTLKLPL-GMSKLGSLELLDVSHTGIREL-PEELKLLVNLKCLTLRWTFELNKIPRQLI---SNSSRLRVLRMLGTGL 281 (536)
Q Consensus 207 ~~i~~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i---~~l~~L~~L~l~~~~~ 281 (536)
.++ .+|. .+..+.+|++|+|++|.+..+ |..+..+++|++|++++| .++.+|...+ ..+++|++|++++|.+
T Consensus 99 -~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 99 -HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp -CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred -cCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 888 6654 578899999999999988877 456888999999999997 8888888744 5789999999998877
Q ss_pred cc
Q 039149 282 LN 283 (536)
Q Consensus 282 ~~ 283 (536)
..
T Consensus 176 ~~ 177 (361)
T 2xot_A 176 KK 177 (361)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=1.9e-13 Score=119.39 Aligned_cols=130 Identities=23% Similarity=0.212 Sum_probs=102.8
Q ss_pred ccceEEEeecCCcc--cccCC-CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCce
Q 039149 149 ENVRRLSLMQNQIE--TLSEV-PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLEL 225 (536)
Q Consensus 149 ~~l~~L~l~~~~~~--~l~~~-~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~ 225 (536)
.+++.|++.++.+. .++.. ..+++|++|++++| .++.+ . .+..+++|++|++++| .+.+.+|..++++++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-S-NLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-S-SCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-h-hhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCE
Confidence 57888888888887 67766 77888888888877 56666 2 2788888888998888 887237776777888888
Q ss_pred EeeccCCCcccc--hhccCCCCCcEEeccCCCCCCccch---HHhhcCccCcEEEeccCcccc
Q 039149 226 LDVSHTGIRELP--EELKLLVNLKCLTLRWTFELNKIPR---QLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 226 L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~~~~ 283 (536)
|++++|.+..+| ..++.+++|++|++++| .++.+|. ..+..+++|++|++.+|...+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 988888888876 67888888888888887 6777776 348888888888888886654
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.6e-13 Score=120.80 Aligned_cols=130 Identities=20% Similarity=0.259 Sum_probs=87.3
Q ss_pred ccccceEEEeecCCcccccCCCCCC-CcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccc-cCCCCCc
Q 039149 147 RWENVRRLSLMQNQIETLSEVPTCP-HLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGM-SKLGSLE 224 (536)
Q Consensus 147 ~~~~l~~L~l~~~~~~~l~~~~~~~-~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i-~~L~~L~ 224 (536)
...+++.|++.+|.+..++....+. +|++|++++| .++.++. +..+++|++|++++| .++ .+|..+ +.+++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N-~l~-~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDG--FPLLRRLKTLLVNNN-RIC-RIGEGLDQALPDLT 91 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEECC--CCCCSSCCEEECCSS-CCC-EECSCHHHHCTTCC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcccc--cccCCCCCEEECCCC-ccc-ccCcchhhcCCCCC
Confidence 3456777777777777665554444 7777777765 5555522 677777777777777 777 666554 6677777
Q ss_pred eEeeccCCCcccch--hccCCCCCcEEeccCCCCCCccchH---HhhcCccCcEEEeccCccc
Q 039149 225 LLDVSHTGIRELPE--ELKLLVNLKCLTLRWTFELNKIPRQ---LISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 225 ~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~~~ 282 (536)
+|++++|.+..+|. .++.+++|++|++++| .+..+|.. +++.+++|+.|++.++...
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777777765 6677777777777776 56666653 3667777777777766543
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=9.4e-13 Score=136.71 Aligned_cols=114 Identities=26% Similarity=0.363 Sum_probs=83.3
Q ss_pred cceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeec
Q 039149 150 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVS 229 (536)
Q Consensus 150 ~l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~ 229 (536)
+++.|++.++.+..+|... +++|++|++++| .++.+| ..+++|++|++++| .++ .+|. +++ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N-~l~-~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQN-ALISLP----ELPASLEYLDACDN-RLS-TLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCS-CCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCC-CCcccc----cccCCCCEEEccCC-CCC-Ccch-hhc--CCCEEECC
Confidence 6777777777777766643 367888888866 666666 34677888888888 777 6777 655 78888888
Q ss_pred cCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccc
Q 039149 230 HTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 230 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
+|.+..+|. .+++|++|++++| .++.+|. .+++|++|++++|.+.
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS
T ss_pred CCcCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCC
Confidence 887777776 5778888888877 6777775 4677888888877654
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=6.8e-13 Score=137.79 Aligned_cols=187 Identities=21% Similarity=0.248 Sum_probs=110.6
Q ss_pred CcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEec
Q 039149 172 HLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTL 251 (536)
Q Consensus 172 ~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l 251 (536)
+|++|++++| .++.+|..+ +++|++|++++| .++ .+| +.+.+|++|++++|.+..+|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l---~~~L~~L~Ls~N-~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL---PPQITVLEITQN-ALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC---CTTCSEEECCSS-CCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CccEEEeCCC-CCCccCHhH---cCCCCEEECcCC-CCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 6777777755 566666542 366777777777 777 676 346777777777777777776 544 7777777
Q ss_pred cCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCchhhHHHhcCcc
Q 039149 252 RWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNK 331 (536)
Q Consensus 252 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~ 331 (536)
++| .++.+|. .+++|++|++++|.+.. +.. .+++|+.|+++.+....
T Consensus 128 s~N-~l~~lp~----~l~~L~~L~Ls~N~l~~-----------------lp~--~l~~L~~L~Ls~N~L~~--------- 174 (571)
T 3cvr_A 128 DNN-QLTMLPE----LPALLEYINADNNQLTM-----------------LPE--LPTSLEVLSVRNNQLTF--------- 174 (571)
T ss_dssp CSS-CCSCCCC----CCTTCCEEECCSSCCSC-----------------CCC--CCTTCCEEECCSSCCSC---------
T ss_pred CCC-cCCCCCC----cCccccEEeCCCCccCc-----------------CCC--cCCCcCEEECCCCCCCC---------
Confidence 776 6666665 46677777777765542 111 23444444444333222
Q ss_pred ccccceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCCcccCCccEEEeecCCCCcCCc
Q 039149 332 LKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREPFVFRSLHHVTIWRCAKLKDST 411 (536)
Q Consensus 332 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 411 (536)
++ .+. ++|+.|+++++ .++.++. .. ..+. ...+.|+.|++++| .++.+|
T Consensus 175 ------------------lp---~l~--~~L~~L~Ls~N-~L~~lp~-~~---~~L~--~~~~~L~~L~Ls~N-~l~~lp 223 (571)
T 3cvr_A 175 ------------------LP---ELP--ESLEALDVSTN-LLESLPA-VP---VRNH--HSEETEIFFRCREN-RITHIP 223 (571)
T ss_dssp ------------------CC---CCC--TTCCEEECCSS-CCSSCCC-CC-------------CCEEEECCSS-CCCCCC
T ss_pred ------------------cc---hhh--CCCCEEECcCC-CCCchhh-HH---Hhhh--cccccceEEecCCC-cceecC
Confidence 21 122 56777777666 4444442 10 0000 02233488888888 677766
Q ss_pred c-cccCCCccEEEEecCchhhhhh
Q 039149 412 F-LVFAPNLKSLVLRNCHAMEEII 434 (536)
Q Consensus 412 ~-l~~l~~L~~L~l~~c~~l~~~~ 434 (536)
. +..+++|+.|+|++++....+|
T Consensus 224 ~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 224 ENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp GGGGGSCTTEEEECCSSSCCHHHH
T ss_pred HHHhcCCCCCEEEeeCCcCCCcCH
Confidence 4 6678888888888876555544
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=2.2e-13 Score=116.34 Aligned_cols=124 Identities=25% Similarity=0.237 Sum_probs=87.0
Q ss_pred ccceEEEeecCCcc--cccCC-CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCce
Q 039149 149 ENVRRLSLMQNQIE--TLSEV-PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLEL 225 (536)
Q Consensus 149 ~~l~~L~l~~~~~~--~l~~~-~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~ 225 (536)
.+++.|++.++.+. .++.. ..+++|++|++++| .++.+ . .+..+++|++|++++| .+.+.+|..++.+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~-~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-A-NLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-T-TCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-h-hhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 56777788777776 56554 66777777777766 55555 2 2677777777777777 777226666666777777
Q ss_pred EeeccCCCcccc--hhccCCCCCcEEeccCCCCCCccch---HHhhcCccCcEEEec
Q 039149 226 LDVSHTGIRELP--EELKLLVNLKCLTLRWTFELNKIPR---QLISNSSRLRVLRML 277 (536)
Q Consensus 226 L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~ 277 (536)
|++++|.+..+| ..++.+++|++|++++| .++.+|. ..++.+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 777777777665 66777777777777776 6666665 347777777777654
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=4.3e-13 Score=117.10 Aligned_cols=135 Identities=22% Similarity=0.175 Sum_probs=103.9
Q ss_pred CCCCCcceEecccccchh--cchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcc-cchhccCCC
Q 039149 168 PTCPHLLTLFLDFNENLN--MIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRE-LPEELKLLV 244 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~--~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~~L~ 244 (536)
...++|++|++++| .+. .+|.. +..+++|++|++++| .++ .+ ..++.+++|++|++++|.+.. +|..++.++
T Consensus 21 ~~~~~L~~L~l~~n-~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 21 RTPAAVRELVLDNC-KSNDGKIEGL-TAEFVNLEFLSLINV-GLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp SCTTSCSEEECCSC-BCBTTBCSSC-CGGGGGCCEEEEESS-CCC-CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred CCcccCCEEECCCC-CCChhhHHHH-HHhCCCCCEEeCcCC-CCC-Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 34588999999987 565 67765 688999999999999 888 66 678889999999999998887 777777899
Q ss_pred CCcEEeccCCCCCCccch-HHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCc
Q 039149 245 NLKCLTLRWTFELNKIPR-QLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 320 (536)
Q Consensus 245 ~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 320 (536)
+|++|++++| .++.+|. ..+..+++|++|++++|..... .......+..+++|+.|++..+..
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~------------~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNL------------NDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTS------------TTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcch------------HHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999998 7888762 2388899999999999877541 000013566777777776665543
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=9.3e-13 Score=130.13 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=122.9
Q ss_pred eEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhc-CCCcccEEEeeccccccccCc-ccccCCCCCceEeec
Q 039149 152 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQ-LMPSLKVLKMSNCVNLTLKLP-LGMSKLGSLELLDVS 229 (536)
Q Consensus 152 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~-~l~~Lr~L~L~~~~~i~~~lp-~~i~~L~~L~~L~L~ 229 (536)
+.+++.++.++.+|.. -.+.++.|++++| .++.++...+. .+++|++|+|+++ .+. .++ ..++.+.+|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCC-ccChhhccCCCCCCEEECC
Confidence 5788888889888864 3457999999987 78888877676 8999999999999 998 665 568999999999999
Q ss_pred cCCCcccch-hccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCcc
Q 039149 230 HTGIRELPE-ELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLK 308 (536)
Q Consensus 230 ~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 308 (536)
+|.+..+|. .+..+++|++|++++| .++.++...+.++++|++|++++|.+... ....+..+..++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l------------~~~~~~~~~~l~ 163 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRF------------PVELIKDGNKLP 163 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSC------------CGGGTC----CT
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCee------------CHHHhcCcccCC
Confidence 999998876 4889999999999998 78888665699999999999999987641 111222336678
Q ss_pred CCceEEEEecCchhh
Q 039149 309 YLEVLELTLGSYHAL 323 (536)
Q Consensus 309 ~L~~L~l~~~~~~~~ 323 (536)
+|+.|+++.+....+
T Consensus 164 ~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 164 KLMLLDLSSNKLKKL 178 (361)
T ss_dssp TCCEEECCSSCCCCC
T ss_pred cCCEEECCCCCCCcc
Confidence 888888877665443
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=4.8e-13 Score=114.27 Aligned_cols=109 Identities=21% Similarity=0.263 Sum_probs=90.8
Q ss_pred CCCCcceEecccccchh--cchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcc-cchhccCCCC
Q 039149 169 TCPHLLTLFLDFNENLN--MIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRE-LPEELKLLVN 245 (536)
Q Consensus 169 ~~~~Lr~L~l~~~~~l~--~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~~L~~ 245 (536)
..++|+.|++++| .++ .+|.. +..+++|++|++++| .++ .+ ..++.+.+|++|++++|.+.. +|..++.+++
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~-~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGKLEGL-TDEFEELEFLSTINV-GLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTBCCSC-CTTCTTCCEEECTTS-CCC-CC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CCccCeEEEccCC-cCChhHHHHH-HhhcCCCcEEECcCC-CCC-Cc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 4578999999987 565 67764 788999999999999 888 66 678899999999999998887 7877888999
Q ss_pred CcEEeccCCCCCCccch-HHhhcCccCcEEEeccCcccc
Q 039149 246 LKCLTLRWTFELNKIPR-QLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 246 L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~ 283 (536)
|++|++++| .++.+|. ..++.+++|++|++++|....
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 999999998 7887651 238899999999999987754
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.35 E-value=4.4e-12 Score=111.66 Aligned_cols=127 Identities=20% Similarity=0.314 Sum_probs=106.9
Q ss_pred ceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCccc-ccCCCCCceEeec
Q 039149 151 VRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLG-MSKLGSLELLDVS 229 (536)
Q Consensus 151 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~-i~~L~~L~~L~L~ 229 (536)
.+.+++.++.+..+|.. ..++|++|++++| .++.++...+..+++|++|+++++ .++ .+|.. ++.+.+|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQ-SLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTT-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCC-CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cce-EeChhHccCCCccCEEECC
Confidence 35677888888877754 3478999999977 677888776889999999999999 898 77654 6889999999999
Q ss_pred cCCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccc
Q 039149 230 HTGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 230 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
+|.+..+|.. ++.+++|++|++++| .++.+|...+..+++|++|++.+|...
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 9999988875 688999999999998 888898876688999999999988765
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=4.4e-12 Score=113.21 Aligned_cols=125 Identities=19% Similarity=0.285 Sum_probs=101.4
Q ss_pred eEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCc-ccccCCCCCceEeecc
Q 039149 152 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLP-LGMSKLGSLELLDVSH 230 (536)
Q Consensus 152 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp-~~i~~L~~L~~L~L~~ 230 (536)
+.+++.++.+..+|.. -.++|++|++++| .++.+|.. +..+++|++|+++++ .++ .++ ..+..+.+|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n-~i~~ip~~-~~~l~~L~~L~Ls~N-~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGN-QFTLVPKE-LSNYKHLTLIDLSNN-RIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSS-CCCSCCGG-GGGCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCC-cCchhHHH-hhcccCCCEEECCCC-cCC-EeCHhHccCCCCCCEEECCC
Confidence 4677777788877764 2468899999876 67788754 888999999999999 888 665 4688899999999999
Q ss_pred CCCcccch-hccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccc
Q 039149 231 TGIRELPE-ELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 231 ~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
|.+..+|. .++.+++|++|++++| .++.+|.+.+..+++|++|++.++...
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 98888775 5888999999999987 788888876888899999999887653
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=6.9e-13 Score=116.73 Aligned_cols=139 Identities=18% Similarity=0.187 Sum_probs=109.1
Q ss_pred cCCCCCCCcceEecccccchhcchhHHhcCC-CcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhc-cC
Q 039149 165 SEVPTCPHLLTLFLDFNENLNMIADGFFQLM-PSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEEL-KL 242 (536)
Q Consensus 165 ~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l-~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i-~~ 242 (536)
+....+++|++|++++| .++.++. +..+ ++|++|+++++ .++ .+ ..++.+.+|++|++++|.+..+|..+ +.
T Consensus 13 ~~~~~~~~L~~L~l~~n-~l~~i~~--~~~~~~~L~~L~Ls~N-~l~-~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGY-KIPVIEN--LGATLDQFDAIDFSDN-EIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp CEEECTTSCEEEECTTS-CCCSCCC--GGGGTTCCSEEECCSS-CCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred HhcCCcCCceEEEeeCC-CCchhHH--hhhcCCCCCEEECCCC-CCC-cc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 34467889999999987 6777765 4444 49999999999 898 77 67999999999999999999998765 89
Q ss_pred CCCCcEEeccCCCCCCccch-HHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCch
Q 039149 243 LVNLKCLTLRWTFELNKIPR-QLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 321 (536)
Q Consensus 243 L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 321 (536)
+++|++|++++| .++.+|. ..+..+++|++|++.+|..... .......+..+++|+.|+++.+...
T Consensus 87 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~------------~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 87 LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNK------------KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGS------------TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCc------------HhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999998 7888886 2388999999999999987531 0011113667788888887766554
Q ss_pred h
Q 039149 322 A 322 (536)
Q Consensus 322 ~ 322 (536)
.
T Consensus 154 ~ 154 (176)
T 1a9n_A 154 E 154 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=2.8e-12 Score=114.46 Aligned_cols=127 Identities=19% Similarity=0.237 Sum_probs=102.8
Q ss_pred eEEEeecCCcccccCCCCCCCcceEecccccchhcchh-HHhcCCCcccEEEeeccccccccCcccccCCCCCceEeecc
Q 039149 152 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIAD-GFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSH 230 (536)
Q Consensus 152 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~-~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~ 230 (536)
+.+++.++.++.+|... .++|++|++++| .++.++. .++..+++|++|+|+++ .+++..|..++.+.+|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 67888888888887642 348999999977 6777765 35788999999999999 88833477889999999999999
Q ss_pred CCCcccchh-ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCccc
Q 039149 231 TGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 231 ~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
|.+..++.. ++.+++|++|++++| .++.+++..+..+++|++|++.++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999887755 888999999999998 777665445888999999999988764
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=8.7e-12 Score=130.05 Aligned_cols=135 Identities=24% Similarity=0.278 Sum_probs=105.0
Q ss_pred CCCCCcceEe-cccccchhcchhHH-----hcC--CCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchh
Q 039149 168 PTCPHLLTLF-LDFNENLNMIADGF-----FQL--MPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEE 239 (536)
Q Consensus 168 ~~~~~Lr~L~-l~~~~~l~~~~~~~-----~~~--l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~ 239 (536)
..+++|+.|+ ++.+ .+..++.-. +.. ...|++|+++++ .++ .+|. ++.+.+|++|++++|.+..+|..
T Consensus 406 ~~l~~L~~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~-~lp~-~~~l~~L~~L~Ls~N~l~~lp~~ 481 (567)
T 1dce_A 406 QYFSTLKAVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLT-VLCH-LEQLLLVTHLDLSHNRLRALPPA 481 (567)
T ss_dssp HHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCS-SCCC-GGGGTTCCEEECCSSCCCCCCGG
T ss_pred HHHHhcccCcchhhc-ccchhhhhhhhcccccccCccCceEEEecCC-CCC-CCcC-ccccccCcEeecCcccccccchh
Confidence 4567788887 4433 333322210 111 135899999999 999 8887 99999999999999999999999
Q ss_pred ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccc-cccccCccCCceEEEEec
Q 039149 240 LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVL-IQELLGLKYLEVLELTLG 318 (536)
Q Consensus 240 i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~ 318 (536)
++.+++|++|++++| .++.+| . ++++++|++|++++|.+.. .. +..+..+++|+.|+++.+
T Consensus 482 ~~~l~~L~~L~Ls~N-~l~~lp-~-l~~l~~L~~L~Ls~N~l~~---------------~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 482 LAALRCLEVLQASDN-ALENVD-G-VANLPRLQELLLCNNRLQQ---------------SAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp GGGCTTCCEEECCSS-CCCCCG-G-GTTCSSCCEEECCSSCCCS---------------SSTTGGGGGCTTCCEEECTTS
T ss_pred hhcCCCCCEEECCCC-CCCCCc-c-cCCCCCCcEEECCCCCCCC---------------CCCcHHHhcCCCCCEEEecCC
Confidence 999999999999998 788888 4 9999999999999988764 22 677888899999999988
Q ss_pred CchhhH
Q 039149 319 SYHALQ 324 (536)
Q Consensus 319 ~~~~~~ 324 (536)
.....+
T Consensus 544 ~l~~~~ 549 (567)
T 1dce_A 544 SLCQEE 549 (567)
T ss_dssp GGGGSS
T ss_pred cCCCCc
Confidence 776654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.2e-11 Score=110.43 Aligned_cols=125 Identities=21% Similarity=0.299 Sum_probs=105.5
Q ss_pred ceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccch-hccCCCCCcEEecc
Q 039149 174 LTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPE-ELKLLVNLKCLTLR 252 (536)
Q Consensus 174 r~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~ 252 (536)
++++++++ .++.+|..+ .++|++|+++++ .++ .+|..++.+.+|++|++++|.+..++. .+..+++|++|+++
T Consensus 13 ~~l~~~~~-~l~~ip~~~---~~~l~~L~L~~n-~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGI---PRDVTELYLDGN-QFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTS-CCSSCCSCC---CTTCCEEECCSS-CCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CCCcCCCCC---CCCCCEEECCCC-cCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 57888865 788888753 368999999999 999 999999999999999999999998875 58999999999999
Q ss_pred CCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCc
Q 039149 253 WTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 320 (536)
Q Consensus 253 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 320 (536)
+| .++.+|...+..+++|++|++.+|.+.. .....+..+++|+.|++..+..
T Consensus 87 ~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 87 YN-RLRCIPPRTFDGLKSLRLLSLHGNDISV---------------VPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SS-CCCBCCTTTTTTCTTCCEEECCSSCCCB---------------CCTTTTTTCTTCCEEECCSSCE
T ss_pred CC-ccCEeCHHHhCCCCCCCEEECCCCCCCe---------------eChhhhhcCccccEEEeCCCCe
Confidence 98 8888887779999999999999998764 2233466788888888876543
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=6.7e-12 Score=111.99 Aligned_cols=125 Identities=15% Similarity=0.222 Sum_probs=105.0
Q ss_pred ceEecccccchhcchhHHhcCCCcccEEEeeccccccccCccc--ccCCCCCceEeeccCCCccc-chhccCCCCCcEEe
Q 039149 174 LTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLG--MSKLGSLELLDVSHTGIREL-PEELKLLVNLKCLT 250 (536)
Q Consensus 174 r~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~--i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~ 250 (536)
++++++++ .++.+|..+ ..+|++|+++++ .+. .+|.. ++.+.+|++|++++|.+..+ |..++.+++|++|+
T Consensus 11 ~~l~~s~~-~l~~ip~~~---~~~l~~L~l~~n-~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDI---PLHTTELLLNDN-ELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTS-CCSSCCSCC---CTTCSEEECCSC-CCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCC-CcCcCccCC---CCCCCEEECCCC-cCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 78899866 788888753 238999999999 998 77754 88999999999999999987 67899999999999
Q ss_pred ccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCceEEEEecCc
Q 039149 251 LRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 320 (536)
Q Consensus 251 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 320 (536)
+++| .++.++...+.++++|++|++++|.+.. .....+..+++|+.|+++.+..
T Consensus 85 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 85 LGEN-KIKEISNKMFLGLHQLKTLNLYDNQISC---------------VMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCSC-CCCEECSSSSTTCTTCCEEECCSSCCCE---------------ECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCC-cCCccCHHHhcCCCCCCEEECCCCcCCe---------------eCHHHhhcCCCCCEEEeCCCCc
Confidence 9998 8888887668899999999999998865 3456677788888888876543
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=4e-12 Score=136.85 Aligned_cols=110 Identities=25% Similarity=0.273 Sum_probs=79.1
Q ss_pred CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCc
Q 039149 168 PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLK 247 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~ 247 (536)
..+++|++|+|++| .+..+|.. +..+++|++|+|++| .++ .+|..|++|.+|++|+|++|.+..+|..++.|++|+
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~~-~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISAN-IFKYDFLTRLYLNGN-SLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCGG-GGGCCSCSCCBCTTS-CCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred ccCCCCcEEECCCC-CCCCCChh-hcCCCCCCEEEeeCC-cCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 55677777777765 55666666 446777777777777 777 777777777777777777777777777777777777
Q ss_pred EEeccCCCCCCccchHHhhcCccCcEEEeccCcccc
Q 039149 248 CLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 248 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 283 (536)
+|++++| .++.+|.+ ++++++|++|++++|.+..
T Consensus 297 ~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 297 YFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred EEECCCC-CCCccChh-hhcCCCccEEeCCCCccCC
Confidence 7777776 66777776 7777777777777776654
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=8.9e-12 Score=129.98 Aligned_cols=105 Identities=22% Similarity=0.346 Sum_probs=95.7
Q ss_pred CCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEe
Q 039149 171 PHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLT 250 (536)
Q Consensus 171 ~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 250 (536)
..|++|++++| .++.+|. ++.+++|++|+|++| .++ .+|..++++++|++|+|++|.++.+| .++.+++|++|+
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHN-RLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELL 514 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred cCceEEEecCC-CCCCCcC--ccccccCcEeecCcc-ccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEE
Confidence 35999999987 7888886 899999999999999 999 99999999999999999999999998 899999999999
Q ss_pred ccCCCCCCcc--chHHhhcCccCcEEEeccCcccc
Q 039149 251 LRWTFELNKI--PRQLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 251 l~~~~~l~~l--p~~~i~~l~~L~~L~l~~~~~~~ 283 (536)
+++| .++.+ |.. ++++++|++|++++|....
T Consensus 515 Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 515 LCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CCSS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGG
T ss_pred CCCC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCC
Confidence 9998 78888 665 9999999999999998765
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=8.3e-12 Score=134.33 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=99.5
Q ss_pred ccceEEEeecCCcccccCC-CCCCCcceEeccc----ccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCC
Q 039149 149 ENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDF----NENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSL 223 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~----~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L 223 (536)
..++++++..+.+...+.. .....|+.+.+.+ +..+. ++...+..+.+|++|+|+++ .+. .+|..++++.+|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL-QIF-NISANIFKYDFL 249 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS-CCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC-CCC-CCChhhcCCCCC
Confidence 4578888888877765443 3334444444332 11233 44555899999999999999 999 999999999999
Q ss_pred ceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCccccccc
Q 039149 224 ELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQE 303 (536)
Q Consensus 224 ~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (536)
++|+|++|.+..+|..+++|++|++|++++| .++.+|.. +++|++|++|++++|.+.. .+..
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~----------------lp~~ 311 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLKYFYFFDNMVTT----------------LPWE 311 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCSEEECCSSCCCC----------------CCSS
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCCEEECCCCCCCc----------------cChh
Confidence 9999999999999999999999999999998 78899987 9999999999999997753 4556
Q ss_pred ccCccCCceEEEEecCch
Q 039149 304 LLGLKYLEVLELTLGSYH 321 (536)
Q Consensus 304 l~~l~~L~~L~l~~~~~~ 321 (536)
+..+++|+.|+++.+...
T Consensus 312 ~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TTSCTTCCCEECTTSCCC
T ss_pred hhcCCCccEEeCCCCccC
Confidence 889999999999887765
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=6.5e-13 Score=119.36 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=40.2
Q ss_pred hcCCCcccEEEeeccccccccCcccccCCCCCceEeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccC
Q 039149 192 FQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRL 271 (536)
Q Consensus 192 ~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L 271 (536)
+..+++|++|+++++ .++ .+| .++.+.+|++|++++|.+..+|..++.+++|++|++++| .++.+|. ++++++|
T Consensus 44 ~~~l~~L~~L~ls~n-~l~-~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~--~~~l~~L 117 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG--IEKLVNL 117 (198)
T ss_dssp HHHTTTCSEEECSEE-EES-CCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHH--HHHHHHS
T ss_pred HhcCCCCCEEECCCC-CCc-ccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCc--cccCCCC
Confidence 444445555555544 444 444 444445555555555544444444444444555555444 4444442 4444555
Q ss_pred cEEEeccCcc
Q 039149 272 RVLRMLGTGL 281 (536)
Q Consensus 272 ~~L~l~~~~~ 281 (536)
++|++++|.+
T Consensus 118 ~~L~l~~N~i 127 (198)
T 1ds9_A 118 RVLYMSNNKI 127 (198)
T ss_dssp SEEEESEEEC
T ss_pred CEEECCCCcC
Confidence 5555544443
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=2.3e-10 Score=100.56 Aligned_cols=124 Identities=24% Similarity=0.401 Sum_probs=104.1
Q ss_pred EEEecCCCcccCccccccccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeecccc
Q 039149 131 FLVCAGEGLKEAPDVKRWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVN 208 (536)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~ 208 (536)
-+.+.+..+..+|... ..+++.|++.++.+..++.. ..+++|++|++++| .++.++...+..+++|++|+++++ .
T Consensus 11 ~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~ 87 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-K 87 (177)
T ss_dssp EEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-C
Confidence 3555666677776433 37899999999999988764 68899999999977 788888877899999999999999 9
Q ss_pred ccccCccc-ccCCCCCceEeeccCCCcccchh-ccCCCCCcEEeccCCCCCCc
Q 039149 209 LTLKLPLG-MSKLGSLELLDVSHTGIRELPEE-LKLLVNLKCLTLRWTFELNK 259 (536)
Q Consensus 209 i~~~lp~~-i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~ 259 (536)
++ .+|.. ++.+.+|++|++++|.+..+|.. +..+++|++|++++| .+..
T Consensus 88 l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~~ 138 (177)
T 2o6r_A 88 LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWDC 138 (177)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBCC
T ss_pred cc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-Ceec
Confidence 99 77664 68899999999999999999877 478999999999998 4443
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=1.1e-10 Score=102.21 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=53.2
Q ss_pred ceEecccccchhcchhHHhcCCCcccEEEeeccccccccC-cccccCCCCCceEeeccCCCcccchh-ccCCCCCcEEec
Q 039149 174 LTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLGSLELLDVSHTGIRELPEE-LKLLVNLKCLTL 251 (536)
Q Consensus 174 r~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l 251 (536)
++++++++ .++.+|..+ .++|++|+|+++ .++ .+ |..++++.+|++|+|++|.+..+|.. ++.+++|++|++
T Consensus 15 ~~l~~~~n-~l~~iP~~~---~~~L~~L~Ls~N-~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGI---PTDKQRLWLNNN-QIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSS-CCSSCCSCC---CTTCSEEECCSS-CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCC-CCCccCCCc---CCCCcEEEeCCC-Ccc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 34444433 444454431 245555555555 555 33 34455555555555555555555544 345555555555
Q ss_pred cCCCCCCccchHHhhcCccCcEEEeccCccc
Q 039149 252 RWTFELNKIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 252 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
++| .++.+|.+.+..+++|++|++.+|...
T Consensus 89 ~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 NDN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CSS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 554 555555544555555555555555443
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=1.7e-10 Score=100.86 Aligned_cols=107 Identities=20% Similarity=0.301 Sum_probs=88.9
Q ss_pred eEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCccc-ccCCCCCceEeecc
Q 039149 152 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLG-MSKLGSLELLDVSH 230 (536)
Q Consensus 152 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~-i~~L~~L~~L~L~~ 230 (536)
+.+++.++.+..+|... .++|++|++++| .++.+++..+.++++|++|+|+++ .++ .+|.. ++++.+|++|+|++
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLT-AIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCC-ccChhHhCCcchhhEEECCC
Confidence 67888888888888753 388999999977 777776666889999999999999 898 88776 47899999999999
Q ss_pred CCCcccchh-ccCCCCCcEEeccCCCCCCccchH
Q 039149 231 TGIRELPEE-LKLLVNLKCLTLRWTFELNKIPRQ 263 (536)
Q Consensus 231 ~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~ 263 (536)
|.+..+|.. +..+++|++|++++| .+...+.+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~~ 123 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNN-PWDCECRD 123 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSS-CBCTTBGG
T ss_pred CccceeCHHHhccccCCCEEEeCCC-Cccccccc
Confidence 999988876 888999999999998 66655543
No 137
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.11 E-value=5.1e-11 Score=127.60 Aligned_cols=83 Identities=13% Similarity=0.243 Sum_probs=74.5
Q ss_pred hhhHHHHHHhhcCCCchhH-hHHHhhcccCCCCcccCHHHHHHHHHHhCCCCCCchhcHHHHHHHHHHHHHhcCccccc-
Q 039149 25 KEVYPLLKFSYDSLQNETI-RSCFLYCCLYPEDYGILKWDLIDCWIGEGFLGESDRFGAENQGYDILDTLVRACLLEEV- 102 (536)
Q Consensus 25 ~~i~~~L~lSY~~L~~~~l-k~cFl~~a~fp~~~~i~~~~Li~~Wia~g~i~~~~~~~~~~~~~~~~~~L~~~sl~~~~- 102 (536)
..|..+|++||+.||+ ++ |+||+|||+||+++.|.++.++.+|+++| ++.+..++++|+++||++..
T Consensus 353 ~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~ 421 (1221)
T 1vt4_I 353 DKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQP 421 (1221)
T ss_dssp HHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCS
T ss_pred hHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeC
Confidence 4899999999999999 88 99999999999999999999999999887 13578899999999999975
Q ss_pred CCCeEEehHHHHHHHH
Q 039149 103 EDDEVKMHDVVRDMAL 118 (536)
Q Consensus 103 ~~~~~~mhdli~dl~~ 118 (536)
....|+|||++++++.
T Consensus 422 ~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 422 KESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSEEBCCCHHHHHHH
T ss_pred CCCEEEehHHHHHHhc
Confidence 4578999999999663
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=1.6e-10 Score=100.71 Aligned_cols=103 Identities=25% Similarity=0.309 Sum_probs=69.9
Q ss_pred cceEecccccchhcchhHHhcCCCcccEEEeeccccccccC-cccccCCCCCceEeeccCCCcccchh-ccCCCCCcEEe
Q 039149 173 LLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLGSLELLDVSHTGIRELPEE-LKLLVNLKCLT 250 (536)
Q Consensus 173 Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 250 (536)
.++++++++ .++.+|..+ .++|++|+|+++ .++ .+ |..++.+.+|++|+|++|.+..+|.. +..+++|++|+
T Consensus 11 ~~~l~~s~n-~l~~ip~~~---~~~l~~L~L~~N-~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI---PTTTQVLYLYDN-QIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC---CTTCSEEECCSS-CCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCC-CcCccCccC---CCCCcEEEcCCC-cCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 355666644 566666542 366777777777 777 55 55577777777777777777777665 46777777777
Q ss_pred ccCCCCCCccchHHhhcCccCcEEEeccCccc
Q 039149 251 LRWTFELNKIPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 251 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
+++| .++.+|.+.+.++++|++|++.+|...
T Consensus 85 L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 85 LNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7776 677777655677777777777776553
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=8.6e-12 Score=111.96 Aligned_cols=127 Identities=23% Similarity=0.278 Sum_probs=104.3
Q ss_pred cceEEEeecC--CcccccC-CCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceE
Q 039149 150 NVRRLSLMQN--QIETLSE-VPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELL 226 (536)
Q Consensus 150 ~l~~L~l~~~--~~~~l~~-~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L 226 (536)
.++...+.+. .++.++. ...+++|++|++++| .++.+| . +..+++|++|++++| .++ .+|..++.+++|++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~-~~~l~~L~~L~l~~n-~l~-~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-S-LSGMENLRILSLGRN-LIK-KIENLDAVADTLEEL 98 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-C-HHHHTTCCEEEEEEE-EEC-SCSSHHHHHHHCSEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-c-cccCCCCCEEECCCC-Ccc-cccchhhcCCcCCEE
Confidence 4555555543 4455553 367899999999987 777787 3 889999999999999 999 999888888999999
Q ss_pred eeccCCCcccchhccCCCCCcEEeccCCCCCCccch-HHhhcCccCcEEEeccCcccc
Q 039149 227 DVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPR-QLISNSSRLRVLRMLGTGLLN 283 (536)
Q Consensus 227 ~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~ 283 (536)
++++|.+..+| .++.+++|++|++++| .++.+|. ..+..+++|++|++.+|....
T Consensus 99 ~L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 99 WISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred ECcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 99999999987 7889999999999998 7887765 348899999999999987643
No 140
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.09 E-value=1.8e-10 Score=132.65 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHcccccc-C----CchhhhHHHHHHhhcCCCchhHhHHHhhcccCCCCcccCHHHHHHHHHHhCCCCCCc
Q 039149 4 EHWRRAIEELRRSASEF-A----GLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLGESD 78 (536)
Q Consensus 4 ~~W~~~~~~l~~~~~~~-~----~~~~~i~~~L~lSY~~L~~~~lk~cFl~~a~fp~~~~i~~~~Li~~Wia~g~i~~~~ 78 (536)
..|+.+++.|....+.. . ...+.+..++.+||+.||+ ++|.||+|||+||+++.|+++.++.+|.++
T Consensus 336 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------- 407 (1249)
T 3sfz_A 336 NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE------- 407 (1249)
T ss_dssp SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------
T ss_pred hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------
Confidence 57999999998876432 1 1123699999999999999 999999999999999999999999999654
Q ss_pred hhcHHHHHHHHHHHHHhcCcccccCC---CeEEehHHHHHHHHHHhccc
Q 039149 79 RFGAENQGYDILDTLVRACLLEEVED---DEVKMHDVVRDMALWITCEI 124 (536)
Q Consensus 79 ~~~~~~~~~~~~~~L~~~sl~~~~~~---~~~~mhdli~dl~~~i~~~~ 124 (536)
++.++.++++|+++||++.... ..|+|||++|++++..+.++
T Consensus 408 ----~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 ----TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ----HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ----HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 4677889999999999987622 35999999999999987664
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=3.3e-10 Score=98.74 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=90.8
Q ss_pred ceEEEeecCCcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCccc-ccCCCCCceEeec
Q 039149 151 VRRLSLMQNQIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLG-MSKLGSLELLDVS 229 (536)
Q Consensus 151 l~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~-i~~L~~L~~L~L~ 229 (536)
.+.+++.++.++.+|... .++|++|++++| .++.+++..|..+++|++|+|+++ .++ .+|.. +..+.+|++|+|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLT-VLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcC-ccChhhccCCCCCCEEECC
Confidence 467888899998888653 489999999977 788887666899999999999999 999 88765 5889999999999
Q ss_pred cCCCcccchh-ccCCCCCcEEeccCCCCCCccc
Q 039149 230 HTGIRELPEE-LKLLVNLKCLTLRWTFELNKIP 261 (536)
Q Consensus 230 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp 261 (536)
+|.++.+|.. +..+++|++|++++| .+...+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNN-PWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCC-CCCCCc
Confidence 9999999875 889999999999998 555443
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=1e-09 Score=106.73 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=17.0
Q ss_pred CCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCc
Q 039149 243 LVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTG 280 (536)
Q Consensus 243 L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 280 (536)
+.+|+.|++.+ .++.++.+++.++++|+.+++..+.
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKT 135 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSS
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCC
Confidence 45555555544 3444444444455555555554443
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=6.5e-09 Score=101.07 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=34.2
Q ss_pred CCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCc-ccccCCCCCceEeecc
Q 039149 170 CPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLP-LGMSKLGSLELLDVSH 230 (536)
Q Consensus 170 ~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp-~~i~~L~~L~~L~L~~ 230 (536)
|++|+.|.+.. .++.++...|.++++|+.|+++++ .+. .++ ..+..+.++.++.+..
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n-~i~-~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKK-TAP-NLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS-SCC-EECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCC-Ccc-ccchhhhcCCCceEEecCcc
Confidence 67777777763 566676666777777777777766 555 443 3344455555554433
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=1.6e-07 Score=93.41 Aligned_cols=97 Identities=13% Similarity=0.163 Sum_probs=43.9
Q ss_pred CCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcc-cccCCCCCceEeeccCCCcccch-hccCCCCCcE
Q 039149 171 PHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPL-GMSKLGSLELLDVSHTGIRELPE-ELKLLVNLKC 248 (536)
Q Consensus 171 ~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~ 248 (536)
..++.+.+.. .++.++...|.++ +|+.+.+..+ ++ .++. .+.+ .+|+.+.+.. .++.++. .+..+.+|+.
T Consensus 113 ~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~--i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG--LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp SSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT--CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred CCccEEEECC--ccCEehHhhcccC-CccEEEeCCC--cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 4444444441 3444444444443 4555555432 33 3332 2222 2455555543 3444432 2445555555
Q ss_pred EeccCCCCCCccchHHhhcCccCcEEEec
Q 039149 249 LTLRWTFELNKIPRQLISNSSRLRVLRML 277 (536)
Q Consensus 249 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 277 (536)
+++.++ .++.+|.+++. ..+|+.+.+.
T Consensus 185 l~l~~n-~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 185 ADLSKT-KITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp EECTTS-CCSEECTTTTT-TCCCSEEECC
T ss_pred eecCCC-cceEechhhEe-ecccCEEEeC
Confidence 555543 45555554333 3455555554
No 145
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.84 E-value=6.7e-09 Score=109.60 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHccccc-c----CCchhhhHHHHHHhhcCCCchhHhHHHhhcccCCCCcccCHHHHHHHHHHhCCCCCCc
Q 039149 4 EHWRRAIEELRRSASE-F----AGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLGESD 78 (536)
Q Consensus 4 ~~W~~~~~~l~~~~~~-~----~~~~~~i~~~L~lSY~~L~~~~lk~cFl~~a~fp~~~~i~~~~Li~~Wia~g~i~~~~ 78 (536)
.+|+.+++.|....+. + ......|..++..||+.||+ +.|.||+++|+||+|+.|+.+.++..|.++
T Consensus 336 ~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------- 407 (591)
T 1z6t_A 336 NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME------- 407 (591)
T ss_dssp TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------
T ss_pred hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-------
Confidence 4699999998876432 1 11123799999999999999 899999999999999999999999999643
Q ss_pred hhcHHHHHHHHHHHHHhcCccccc---CCCeEEehHHHHHHHHHHh
Q 039149 79 RFGAENQGYDILDTLVRACLLEEV---EDDEVKMHDVVRDMALWIT 121 (536)
Q Consensus 79 ~~~~~~~~~~~~~~L~~~sl~~~~---~~~~~~mhdli~dl~~~i~ 121 (536)
.+.+..++++|+++||++.. ....|+||+++|++++...
T Consensus 408 ----~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 ----TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ----HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 23567889999999999864 2347999999999998773
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=1.5e-08 Score=99.26 Aligned_cols=93 Identities=23% Similarity=0.344 Sum_probs=45.5
Q ss_pred chhcchhHHhcCCCcccEEEeec-cccccccCc-ccccCCCCCceEeeccCCCcccch-hccCCCCCcEEeccCCCCCCc
Q 039149 183 NLNMIADGFFQLMPSLKVLKMSN-CVNLTLKLP-LGMSKLGSLELLDVSHTGIRELPE-ELKLLVNLKCLTLRWTFELNK 259 (536)
Q Consensus 183 ~l~~~~~~~~~~l~~Lr~L~L~~-~~~i~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~ 259 (536)
.++.+|. +..+.+|++|+|++ + .+. .+| ..++.|.+|++|+|++|.+..+|. .+++|++|++|+|++| .++.
T Consensus 20 ~l~~ip~--l~~~~~L~~L~l~~~n-~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~ 94 (347)
T 2ifg_A 20 ALDSLHH--LPGAENLTELYIENQQ-HLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALES 94 (347)
T ss_dssp CCTTTTT--SCSCSCCSEEECCSCS-SCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSC
T ss_pred CCCccCC--CCCCCCeeEEEccCCC-CCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccce
Confidence 3444544 45555555555553 4 454 333 335555555555555555554433 3455555555555554 4555
Q ss_pred cchHHhhcCccCcEEEeccCcc
Q 039149 260 IPRQLISNSSRLRVLRMLGTGL 281 (536)
Q Consensus 260 lp~~~i~~l~~L~~L~l~~~~~ 281 (536)
+|.+.+..++ |+.|++.++..
T Consensus 95 ~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 95 LSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSTTTCSCC-CCEEECCSSCC
T ss_pred eCHHHcccCC-ceEEEeeCCCc
Confidence 5544233333 55555554443
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.77 E-value=1.9e-07 Score=92.92 Aligned_cols=234 Identities=13% Similarity=0.105 Sum_probs=151.2
Q ss_pred ccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCc-ccccCCCCCce
Q 039149 149 ENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLP-LGMSKLGSLEL 225 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp-~~i~~L~~L~~ 225 (536)
..+..+.+.+ .++.++.. ..+ +|+.+.+.. .++.++...|.++ +|+.+.+.. .++ .++ ..+.++.+|+.
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~--~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS--TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT--TCC-EECSSTTTTCTTCCE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCC--CccEECHHhcCCC-CceEEEeCC--Ccc-EehHHHhhCcccCCe
Confidence 3455555543 34444443 344 688888874 4778887778775 688988875 466 554 46778999999
Q ss_pred EeeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCccccccccc
Q 039149 226 LDVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELL 305 (536)
Q Consensus 226 L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (536)
+++..++++.+|...-...+|+.+.+.. .++.++..++.++++|+.+.+..+- .. .....+.
T Consensus 185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l-~~---------------I~~~aF~ 246 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENV-ST---------------IGQEAFR 246 (401)
T ss_dssp EECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTC-CE---------------ECTTTTT
T ss_pred eecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCc-cC---------------ccccccc
Confidence 9999888988887755578899999975 4888888888889999999887532 11 1111222
Q ss_pred CccCCceEEEEecCchhhHHHhcCccccccceeEeecccCC----cceecccccccccccccceecccccccceeecccc
Q 039149 306 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGD----ATSIVDATAFADLNHLNELYINKGFELEELKIDYT 381 (536)
Q Consensus 306 ~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 381 (536)
. .+|+.+.+.. ....+.. .......+|+.+.+.+... ...++.. .+..+++|+.+.+.+ .++.+....+
T Consensus 247 ~-~~L~~i~lp~-~i~~I~~--~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~-aF~~c~~L~~l~l~~--~i~~I~~~aF 319 (401)
T 4fdw_A 247 E-SGITTVKLPN-GVTNIAS--RAFYYCPELAEVTTYGSTFNDDPEAMIHPY-CLEGCPKLARFEIPE--SIRILGQGLL 319 (401)
T ss_dssp T-CCCSEEEEET-TCCEECT--TTTTTCTTCCEEEEESSCCCCCTTCEECTT-TTTTCTTCCEECCCT--TCCEECTTTT
T ss_pred c-CCccEEEeCC-CccEECh--hHhhCCCCCCEEEeCCccccCCcccEECHH-HhhCCccCCeEEeCC--ceEEEhhhhh
Confidence 2 4567776632 2222211 1111223677777754321 1123322 778888999998874 4677765544
Q ss_pred cccccccCCcccCCccEEEeecCCCCcCCc--ccccCCCccEEEEecC
Q 039149 382 EIVRKRREPFVFRSLHHVTIWRCAKLKDST--FLVFAPNLKSLVLRNC 427 (536)
Q Consensus 382 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c 427 (536)
. .+++|+.+.|.. +++.+. .+..+ +|+.+.+.++
T Consensus 320 ~---------~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 320 G---------GNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp T---------TCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred c---------CCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 3 678899998854 355432 35567 8999999875
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=2.8e-08 Score=97.31 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=85.3
Q ss_pred EEEeecC-CcccccCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceEeeccC
Q 039149 153 RLSLMQN-QIETLSEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELLDVSHT 231 (536)
Q Consensus 153 ~L~l~~~-~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L~L~~~ 231 (536)
.++..++ .+..+|....+++|+.|+|+++..++.++...|..+++|++|+|+++ .+++..|..+++|.+|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 77888877778889999999634888888777999999999999999 898334556899999999999999
Q ss_pred CCcccchhccCCCCCcEEeccCCCCCCc
Q 039149 232 GIRELPEELKLLVNLKCLTLRWTFELNK 259 (536)
Q Consensus 232 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~ 259 (536)
.+..+|..+.....|+.|++.+| .+..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N-~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGN-PLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSS-CCCC
T ss_pred ccceeCHHHcccCCceEEEeeCC-CccC
Confidence 99999977555445999999997 5553
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.56 E-value=1.2e-08 Score=100.54 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=84.7
Q ss_pred ccceEEEeecCCcccccC-----C--CCCCCcceEecccccchhcc-hhHHhcCCCcccEEEeeccccccccCcccc---
Q 039149 149 ENVRRLSLMQNQIETLSE-----V--PTCPHLLTLFLDFNENLNMI-ADGFFQLMPSLKVLKMSNCVNLTLKLPLGM--- 217 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~-----~--~~~~~Lr~L~l~~~~~l~~~-~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i--- 217 (536)
..++.|++.++.+..... . ...++|++|++++| .++.. ...+...+++|++|+|++| .+.+.-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 456677777766654211 1 23357777777766 33221 1222334456777777777 6651111222
Q ss_pred --cCCCCCceEeeccCCCcc-----cchhccCCCCCcEEeccCCCCCCcc-----chHHhhcCccCcEEEeccCcccccc
Q 039149 218 --SKLGSLELLDVSHTGIRE-----LPEELKLLVNLKCLTLRWTFELNKI-----PRQLISNSSRLRVLRMLGTGLLNFH 285 (536)
Q Consensus 218 --~~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~l-----p~~~i~~l~~L~~L~l~~~~~~~~~ 285 (536)
....+|++|+|++|.+.. ++..+..+++|++|++++| .++.. +.. +...++|++|++++|.+...
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~- 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDT- 226 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHH-
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHH-
Confidence 235667777777776643 4445566777777777776 44432 222 55666777777777765430
Q ss_pred cccccccccCCcccccccccCccCCceEEEEecCc
Q 039149 286 QASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 320 (536)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 320 (536)
........+...++|+.|+++.+..
T Consensus 227 ----------g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 227 ----------AALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp ----------HHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred ----------HHHHHHHHHHhCCCCCEEeccCCCC
Confidence 0001223344456666666665544
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.48 E-value=4.7e-08 Score=96.30 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=40.5
Q ss_pred CcccEEEeeccccccccCccccc-CCCCCceEeeccCCCcccc-----hhc-cCCCCCcEEeccCCCCCCc-----cchH
Q 039149 196 PSLKVLKMSNCVNLTLKLPLGMS-KLGSLELLDVSHTGIRELP-----EEL-KLLVNLKCLTLRWTFELNK-----IPRQ 263 (536)
Q Consensus 196 ~~Lr~L~L~~~~~i~~~lp~~i~-~L~~L~~L~L~~~~i~~lp-----~~i-~~L~~L~~L~l~~~~~l~~-----lp~~ 263 (536)
.+|++|+|++| .+.+.-...+. .+.+|++|+|++|.+.... ..+ ...++|++|++++| .++. ++..
T Consensus 101 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH
T ss_pred CCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHH
Confidence 46666666666 55411111121 2455666666666554221 112 23455666666665 3432 2222
Q ss_pred HhhcCccCcEEEeccCccc
Q 039149 264 LISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 264 ~i~~l~~L~~L~l~~~~~~ 282 (536)
+..+++|++|++++|.+.
T Consensus 179 -L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 179 -LAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp -HHTCSSCCEEECTTSSCH
T ss_pred -HhcCCCcCEEeCCCCCCC
Confidence 345556666666665543
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=1.6e-07 Score=80.64 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=46.0
Q ss_pred cceeEeecccCCcceecccccccccccccceecccccccceeecccccccccccCC-cccCCccEEEeecCCCCcC--Cc
Q 039149 335 CIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIVRKRREP-FVFRSLHHVTIWRCAKLKD--ST 411 (536)
Q Consensus 335 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~--l~ 411 (536)
.|+.|++++|. +++..+. .+..+++|++|++++|..++........ .. ...++|++|+|++|+++++ +.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~------~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLS------QLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCC-CCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHH------TCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCC-ccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHH------hcccccCCCCEEEcCCCCcCCHHHHH
Confidence 56666666665 4444332 4555666666666666554433222111 00 0123566666666655554 44
Q ss_pred ccccCCCccEEEEecCchhhh
Q 039149 412 FLVFAPNLKSLVLRNCHAMEE 432 (536)
Q Consensus 412 ~l~~l~~L~~L~l~~c~~l~~ 432 (536)
.+..+++|+.|+|++|+.+++
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 455556666666666655443
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.28 E-value=7.8e-06 Score=81.30 Aligned_cols=77 Identities=21% Similarity=0.146 Sum_probs=45.9
Q ss_pred ccCCccEEEeecCCCCcCCc--ccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceeccccccccccc
Q 039149 392 VFRSLHHVTIWRCAKLKDST--FLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLPDLKSI 469 (536)
Q Consensus 392 ~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 469 (536)
.+.+|+.+.+.+. ++.+. .+..+.+|+.+.|.+ .++.+.. ....++.+|+.+.+.. +++.+
T Consensus 295 ~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-----------~aF~~c~~L~~i~lp~--~l~~I 357 (394)
T 4fs7_A 295 GCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGK-----------RSFRGCTSLSNINFPL--SLRKI 357 (394)
T ss_dssp TCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECT-----------TTTTTCTTCCEECCCT--TCCEE
T ss_pred ccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhH-----------HhccCCCCCCEEEECc--cccEe
Confidence 5677888877542 44332 345677888888753 3555533 2345567788887753 35555
Q ss_pred cCC-CcCCCccceEeec
Q 039149 470 HWK-PLPFTHLKEMGVR 485 (536)
Q Consensus 470 ~~~-~~~~~~L~~L~i~ 485 (536)
... +..+++|+.+.+.
T Consensus 358 ~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 358 GANAFQGCINLKKVELP 374 (394)
T ss_dssp CTTTBTTCTTCCEEEEE
T ss_pred hHHHhhCCCCCCEEEEC
Confidence 442 3345677777664
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.21 E-value=1.6e-05 Score=79.10 Aligned_cols=268 Identities=13% Similarity=0.137 Sum_probs=125.8
Q ss_pred CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCc-ccccCCCCCceEeeccC---------------
Q 039149 168 PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLP-LGMSKLGSLELLDVSHT--------------- 231 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp-~~i~~L~~L~~L~L~~~--------------- 231 (536)
..|.+|+.+.+.. .++.++..+|.++.+|+.+++..+ ++ .++ ..+..+.+|+.+.+..+
T Consensus 68 ~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 68 QGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VK-MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CC-EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred hCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ce-EccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 4566666666652 455566655666666666666432 33 332 23444555554443321
Q ss_pred ------CCcccc-hhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcccccccccccccccCCcccccccc
Q 039149 232 ------GIRELP-EELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQEL 304 (536)
Q Consensus 232 ------~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 304 (536)
.+..+. ..+..+.+|+.+.+.. .+..++.+++.++.+|+.+.+..+-.. ..-..+
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~~~~----------------I~~~~F 204 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRNLKI----------------IRDYCF 204 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTTCCE----------------ECTTTT
T ss_pred ccccCccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCCceE----------------eCchhh
Confidence 111111 2345566667666654 345566555666666666666543111 011122
Q ss_pred cCccCCceEEEEecCchhhHHHhcCccccccceeEeecccCCcceecccccccccccccceecccccccceeeccccccc
Q 039149 305 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLQLAGDATSIVDATAFADLNHLNELYINKGFELEELKIDYTEIV 384 (536)
Q Consensus 305 ~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 384 (536)
..+..|+.+.+..... .+... ......|+.+.+.. ....+... .+..+..|+.+.+... ...+......
T Consensus 205 ~~~~~L~~i~~~~~~~-~i~~~---~~~~~~l~~i~ip~--~~~~i~~~-~f~~~~~l~~~~~~~~--~~~i~~~~F~-- 273 (394)
T 4fs7_A 205 AECILLENMEFPNSLY-YLGDF---ALSKTGVKNIIIPD--SFTELGKS-VFYGCTDLESISIQNN--KLRIGGSLFY-- 273 (394)
T ss_dssp TTCTTCCBCCCCTTCC-EECTT---TTTTCCCCEEEECT--TCCEECSS-TTTTCSSCCEEEECCT--TCEECSCTTT--
T ss_pred ccccccceeecCCCce-Eeehh---hcccCCCceEEECC--Cceecccc-cccccccceeEEcCCC--cceeeccccc--
Confidence 2233333322211100 00000 00112455555532 22222221 4556666776666542 2233322211
Q ss_pred ccccCCcccCCccEEEeecCCCCcCCcccccCCCccEEEEecCchhhhhhccCCcCCccccccCCCCCCccceecccccc
Q 039149 385 RKRREPFVFRSLHHVTIWRCAKLKDSTFLVFAPNLKSLVLRNCHAMEEIISVGKFSEVPEMMRHMSPFENLQRLHVEDLP 464 (536)
Q Consensus 385 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 464 (536)
.+..++.+..... .+.. .....+.+|+.+.+.+ .++.+.. .....+.+|+.+.|.+
T Consensus 274 -------~~~~l~~~~~~~~-~i~~-~~F~~~~~L~~i~l~~--~i~~I~~-----------~aF~~c~~L~~i~lp~-- 329 (394)
T 4fs7_A 274 -------NCSGLKKVIYGSV-IVPE-KTFYGCSSLTEVKLLD--SVKFIGE-----------EAFESCTSLVSIDLPY-- 329 (394)
T ss_dssp -------TCTTCCEEEECSS-EECT-TTTTTCTTCCEEEECT--TCCEECT-----------TTTTTCTTCCEECCCT--
T ss_pred -------cccccceeccCce-eecc-cccccccccccccccc--ccceech-----------hhhcCCCCCCEEEeCC--
Confidence 5566666655433 1111 1245678888888854 3555543 2345567788887743
Q ss_pred ccccccCC-CcCCCccceEeeccCCCCCCCCC
Q 039149 465 DLKSIHWK-PLPFTHLKEMGVRACDQLEKLPL 495 (536)
Q Consensus 465 ~L~~~~~~-~~~~~~L~~L~i~~C~~L~~lp~ 495 (536)
+++.+... +..+.+|+.+.+.. +++.++.
T Consensus 330 ~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~ 359 (394)
T 4fs7_A 330 LVEEIGKRSFRGCTSLSNINFPL--SLRKIGA 359 (394)
T ss_dssp TCCEECTTTTTTCTTCCEECCCT--TCCEECT
T ss_pred cccEEhHHhccCCCCCCEEEECc--cccEehH
Confidence 35555432 33456677766632 3444443
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=2.2e-06 Score=73.59 Aligned_cols=37 Identities=5% Similarity=-0.104 Sum_probs=18.2
Q ss_pred CCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcc
Q 039149 245 NLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGL 281 (536)
Q Consensus 245 ~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 281 (536)
+|++|++++|..++.-.-..+.++++|++|++++|..
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTT
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCC
Confidence 4555555555444432222244555555555555543
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.13 E-value=0.0001 Score=73.12 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=56.6
Q ss_pred CcceEecccccchhcchhHHhcCCCcccEEEeecc--ccccccCc-ccccCCCCCceEeeccCCCcccch-hccCCCCCc
Q 039149 172 HLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNC--VNLTLKLP-LGMSKLGSLELLDVSHTGIRELPE-ELKLLVNLK 247 (536)
Q Consensus 172 ~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~--~~i~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~ 247 (536)
.|+.+.+.. .++.++...|.++.+|+.+.+..+ ..++ .+. ..+..+.+|+.+.+..+ ++.++. .+..+.+|+
T Consensus 65 ~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred cCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence 467777652 466666666777777777776543 1233 332 23445666666555432 344432 245566666
Q ss_pred EEeccCCCCCCccchHHhhcCccCcEEEecc
Q 039149 248 CLTLRWTFELNKIPRQLISNSSRLRVLRMLG 278 (536)
Q Consensus 248 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 278 (536)
.+.+.. .+..++...+..+.+|+.+.+..
T Consensus 141 ~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 141 TVTIPE--GVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred cccccc--eeeeecccceecccccccccccc
Confidence 666654 34555555556666666666543
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.07 E-value=8.8e-06 Score=79.41 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=29.9
Q ss_pred ccCCceEEEEecCchh--hHHHhcCccccccceeEeecccCCcceec---ccccccccccccceecccc
Q 039149 307 LKYLEVLELTLGSYHA--LQILLSSNKLKSCIRSLFLQLAGDATSIV---DATAFADLNHLNELYINKG 370 (536)
Q Consensus 307 l~~L~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~l~~~~~L~~L~l~~~ 370 (536)
+++|+.|.+..+.... ...+.... ..++|+.|+|+.+ .+.... +...+.++++|+.|+++.|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~-~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESD-ILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCS-SGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCc-cCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 4566666665444332 11222211 1236667776543 233211 1113456677888888766
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.93 E-value=2e-05 Score=76.86 Aligned_cols=136 Identities=19% Similarity=0.187 Sum_probs=73.2
Q ss_pred CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCccccc--CCCCCceEeeccC--------CCcccc
Q 039149 168 PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMS--KLGSLELLDVSHT--------GIRELP 237 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~--~L~~L~~L~L~~~--------~i~~lp 237 (536)
..+|+|+.|.++++..+ .++. + .+++|+.|++..+ .+.......++ .+++|++|+|+.+ .+..+.
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred hcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 45677777777765322 2332 2 2677777777766 44412222233 5777777777421 122222
Q ss_pred hhc--cCCCCCcEEeccCCCCCC-ccchHHh---hcCccCcEEEeccCcccccccccccccccCCcccccccccCccCCc
Q 039149 238 EEL--KLLVNLKCLTLRWTFELN-KIPRQLI---SNSSRLRVLRMLGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLE 311 (536)
Q Consensus 238 ~~i--~~L~~L~~L~l~~~~~l~-~lp~~~i---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 311 (536)
..+ +.+++|++|++.+| .+. ..+.. + ..+++|++|+++.|.+... ........+..+++|+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~-la~a~~~~~L~~LdLs~n~L~d~-----------G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDA-EEQNVVVEM-FLESDILPQLETMDISAGVLTDE-----------GARLLLDHVDKIKHLK 310 (362)
T ss_dssp GGSCTTTCTTCCEEEEESC-TTHHHHHHH-HHHCSSGGGCSEEECCSSCCBHH-----------HHHHHHTTHHHHTTCS
T ss_pred HHHhcCCCCCcCEEeCCCC-CCchHHHHH-HHhCccCCCCCEEECCCCCCChH-----------HHHHHHhhcccCCcce
Confidence 222 24677777777776 332 12221 2 2466777777776654320 0113555566677777
Q ss_pred eEEEEecCch
Q 039149 312 VLELTLGSYH 321 (536)
Q Consensus 312 ~L~l~~~~~~ 321 (536)
.|+++.+...
T Consensus 311 ~L~L~~n~i~ 320 (362)
T 2ra8_A 311 FINMKYNYLS 320 (362)
T ss_dssp EEECCSBBCC
T ss_pred EEECCCCcCC
Confidence 7777765543
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.89 E-value=1.2e-05 Score=70.62 Aligned_cols=111 Identities=18% Similarity=0.107 Sum_probs=72.1
Q ss_pred CCCCCcceEecccccchh-----cchhHHhcCCCcccEEEeeccccccc----cCcccccCCCCCceEeeccCCCcc---
Q 039149 168 PTCPHLLTLFLDFNENLN-----MIADGFFQLMPSLKVLKMSNCVNLTL----KLPLGMSKLGSLELLDVSHTGIRE--- 235 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~-----~~~~~~~~~l~~Lr~L~L~~~~~i~~----~lp~~i~~L~~L~~L~L~~~~i~~--- 235 (536)
...+.|++|++++|..+. .+... +...++|++|+|++| .+.+ .+...+....+|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 456778888887652332 22232 566788888888888 6652 133445556778888888887763
Q ss_pred --cchhccCCCCCcEEec--cCCCCCCc-----cchHHhhcCccCcEEEeccCccc
Q 039149 236 --LPEELKLLVNLKCLTL--RWTFELNK-----IPRQLISNSSRLRVLRMLGTGLL 282 (536)
Q Consensus 236 --lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~~ 282 (536)
+...+...+.|++|++ ++| .+.. +... +...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANM-LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHH-HHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHH-HHhCCCcCEEeccCCCCC
Confidence 5566777778888888 666 4543 3332 556677888888777654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.76 E-value=2.6e-05 Score=72.18 Aligned_cols=84 Identities=20% Similarity=0.173 Sum_probs=62.9
Q ss_pred hcCCCcccEEEeeccccccc--cCcccccCCCCCceEeeccCCCcccchhccCCC--CCcEEeccCCCCCCccc------
Q 039149 192 FQLMPSLKVLKMSNCVNLTL--KLPLGMSKLGSLELLDVSHTGIRELPEELKLLV--NLKCLTLRWTFELNKIP------ 261 (536)
Q Consensus 192 ~~~l~~Lr~L~L~~~~~i~~--~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lp------ 261 (536)
..++++|+.|+|+++ .+.+ .+|..++.+++|++|+|++|.+..+ ..+..+. +|++|++.+|.-...+|
T Consensus 166 ~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 357889999999999 8882 3345667899999999999988877 3455555 89999999984333444
Q ss_pred hHHhhcCccCcEEEec
Q 039149 262 RQLISNSSRLRVLRML 277 (536)
Q Consensus 262 ~~~i~~l~~L~~L~l~ 277 (536)
..++..+++|+.|+-.
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 2347788899888654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.72 E-value=0.0031 Score=61.94 Aligned_cols=120 Identities=12% Similarity=0.168 Sum_probs=49.5
Q ss_pred ccceEEEeecCCcccccCC--CCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcccccCCCCCceE
Q 039149 149 ENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLGSLELL 226 (536)
Q Consensus 149 ~~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~~L~~L 226 (536)
.+++.+.+. ..++.+... ..|.+|+.+.+.. .++.++..+|.++ .|..+.+.. .++ .++.......+|+.+
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~--~l~-~I~~~aF~~~~L~~i 118 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME--RVK-KFGDYVFQGTDLDDF 118 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT--TCC-EECTTTTTTCCCSEE
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc--eee-EeccceeccCCcccc
Confidence 344555443 223333332 4555555555542 3444555445554 333333332 233 333222222345555
Q ss_pred eeccCCCcccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEecc
Q 039149 227 DVSHTGIRELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLG 278 (536)
Q Consensus 227 ~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 278 (536)
.+..+ +..+....-.-.+|+...+.. .++.+....+..+.+++...+..
T Consensus 119 ~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp ECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECT
T ss_pred cCCCc-cccccccccccceeeeeeccc--eeeccccchhccccccccccccc
Confidence 55432 222222211122344444433 23444433344555555555543
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.59 E-value=3.7e-05 Score=67.42 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=80.1
Q ss_pred HHhcCCCcccEEEeeccccccc----cCcccccCCCCCceEeeccCCCc-----ccchhccCCCCCcEEeccCCCCCCc-
Q 039149 190 GFFQLMPSLKVLKMSNCVNLTL----KLPLGMSKLGSLELLDVSHTGIR-----ELPEELKLLVNLKCLTLRWTFELNK- 259 (536)
Q Consensus 190 ~~~~~l~~Lr~L~L~~~~~i~~----~lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~- 259 (536)
.++...+.|++|+|++|..+.+ .+...+....+|++|+|++|.+. .+...+...++|++|++++| .+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence 3477889999999998733431 34455677889999999999875 34555667788999999998 6654
Q ss_pred ----cchHHhhcCccCcEEEe--ccCcccccccccccccccCCcccccccccCccCCceEEEEecCch
Q 039149 260 ----IPRQLISNSSRLRVLRM--LGTGLLNFHQASEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 321 (536)
Q Consensus 260 ----lp~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 321 (536)
+... +...++|++|++ .+|.+... ........+...++|+.|+++.+...
T Consensus 109 g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~-----------g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEA-LQSNTSLIELRIDNQSQPLGNN-----------VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHG-GGGCSSCCEEECCCCSSCCCHH-----------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHH-HHhCCCceEEEecCCCCCCCHH-----------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3443 667788999999 66766430 00012334455577777777665543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.57 E-value=0.0013 Score=65.06 Aligned_cols=122 Identities=11% Similarity=0.216 Sum_probs=82.1
Q ss_pred cceEEEeecCCcccccCC--CCCCCcceEecccc--cchhcchhHHhcCCCcccEEEeeccccccccCc-ccccCCCCCc
Q 039149 150 NVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFN--ENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLP-LGMSKLGSLE 224 (536)
Q Consensus 150 ~l~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~--~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp-~~i~~L~~L~ 224 (536)
.++.+.+.. .++.+... .+|.+|+.+.+..+ ..++.++...|..+.+|+.+.+... ++ .++ ..+..+.+|+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~-~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VT-EIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CS-EECTTTTTTCTTCC
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cc-eehhhhhhhhcccc
Confidence 477777764 35666554 78899999988754 2477788777888888887766543 44 444 3456788888
Q ss_pred eEeeccCCCcccch-hccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccC
Q 039149 225 LLDVSHTGIRELPE-ELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGT 279 (536)
Q Consensus 225 ~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 279 (536)
.+.+... +..++. .+....+|+.+.+.. .++.+...++. ..+|+.+.+...
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~-~~~l~~i~ip~~ 192 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFT-GTALTQIHIPAK 192 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-TCCCSEEEECTT
T ss_pred cccccce-eeeecccceecccccccccccc--eeeEecccccc-ccceeEEEECCc
Confidence 8888653 444443 466778888888875 46677666454 356777777643
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.45 E-value=8.8e-05 Score=68.61 Aligned_cols=81 Identities=26% Similarity=0.286 Sum_probs=63.1
Q ss_pred CCCCCcceEecccccchhcchh--HHhcCCCcccEEEeeccccccccCcccccCCC--CCceEeeccCCCc-ccc-----
Q 039149 168 PTCPHLLTLFLDFNENLNMIAD--GFFQLMPSLKVLKMSNCVNLTLKLPLGMSKLG--SLELLDVSHTGIR-ELP----- 237 (536)
Q Consensus 168 ~~~~~Lr~L~l~~~~~l~~~~~--~~~~~l~~Lr~L~L~~~~~i~~~lp~~i~~L~--~L~~L~L~~~~i~-~lp----- 237 (536)
..+++|++|+|++| .+..++. ..+..+++|++|+|+++ .|+ .+ ..+..+. +|++|+|++|.+. .+|
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~-~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELK-SE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCC-SG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccC-Cc-hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 46889999999987 6666542 33678999999999999 888 65 3455555 9999999999876 344
Q ss_pred --hhccCCCCCcEEecc
Q 039149 238 --EELKLLVNLKCLTLR 252 (536)
Q Consensus 238 --~~i~~L~~L~~L~l~ 252 (536)
..+..+++|+.||-.
T Consensus 243 ~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHCTTCCEESSC
T ss_pred HHHHHHHCcccCeECCc
Confidence 237789999999853
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.08 E-value=0.033 Score=54.47 Aligned_cols=104 Identities=8% Similarity=0.084 Sum_probs=70.4
Q ss_pred cCCCCCCCcceEecccccchhcchhHHhcCCCcccEEEeeccccccccCcc-cccCCCCCceEeeccCCCcccchhccCC
Q 039149 165 SEVPTCPHLLTLFLDFNENLNMIADGFFQLMPSLKVLKMSNCVNLTLKLPL-GMSKLGSLELLDVSHTGIRELPEELKLL 243 (536)
Q Consensus 165 ~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~i~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~i~~L 243 (536)
|......+|+.+.+.. .++.++..+|.++.+|+.+++.. .++ .++. .+.++ +|+.+.+.. +++.++...-..
T Consensus 40 ~~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~-~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~ 112 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVT-SIGDGAFADT-KLQSYTGME-RVKKFGDYVFQG 112 (379)
T ss_dssp TTGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCC-EECTTTTTTC-CCCEEEECT-TCCEECTTTTTT
T ss_pred cccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cce-EechhhhcCC-CCceEECCc-eeeEeccceecc
Confidence 3345667899999973 68889998899999999999965 466 5543 34455 677777654 466666543344
Q ss_pred CCCcEEeccCCCCCCccchHHhhcCccCcEEEecc
Q 039149 244 VNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLG 278 (536)
Q Consensus 244 ~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 278 (536)
.+|+.+.+.. .++.+...++.+. +|..+.+..
T Consensus 113 ~~L~~i~lp~--~~~~i~~~~F~~~-~l~~~~~~~ 144 (379)
T 4h09_A 113 TDLDDFEFPG--ATTEIGNYIFYNS-SVKRIVIPK 144 (379)
T ss_dssp CCCSEEECCT--TCCEECTTTTTTC-CCCEEEECT
T ss_pred CCcccccCCC--ccccccccccccc-eeeeeeccc
Confidence 5899999876 3566666544443 566665543
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.14 E-value=0.03 Score=45.36 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=37.6
Q ss_pred eEeeccCCCc--ccchhccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccCcc
Q 039149 225 LLDVSHTGIR--ELPEELKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGTGL 281 (536)
Q Consensus 225 ~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 281 (536)
.++-++.+++ .+|..+ -.+|++|+|++| .++.+|.+++..+++|+.|++.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 5556666666 777553 246778888876 77777777677778888888777654
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.58 E-value=0.14 Score=41.38 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=17.2
Q ss_pred cccEEEeeccccccccCccc-ccCCCCCceEeeccC
Q 039149 197 SLKVLKMSNCVNLTLKLPLG-MSKLGSLELLDVSHT 231 (536)
Q Consensus 197 ~Lr~L~L~~~~~i~~~lp~~-i~~L~~L~~L~L~~~ 231 (536)
+|++|+|+++ .|+ .+|.. +..+.+|++|+|.+|
T Consensus 32 ~l~~L~Ls~N-~l~-~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGN-NLT-ALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTS-CCS-SCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCC-ccChhhhhhccccCEEEecCC
Confidence 3555555555 555 55433 334555555555554
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.47 E-value=0.21 Score=43.40 Aligned_cols=83 Identities=10% Similarity=0.046 Sum_probs=41.2
Q ss_pred CCCcceEecccccchh-----cchhHHhcCCCcccEEEeecccccccc----CcccccCCCCCceEeeccCCCc-----c
Q 039149 170 CPHLLTLFLDFNENLN-----MIADGFFQLMPSLKVLKMSNCVNLTLK----LPLGMSKLGSLELLDVSHTGIR-----E 235 (536)
Q Consensus 170 ~~~Lr~L~l~~~~~l~-----~~~~~~~~~l~~Lr~L~L~~~~~i~~~----lp~~i~~L~~L~~L~L~~~~i~-----~ 235 (536)
-+.|+.|+|+++..+. .+... +..-..|+.|+|++| .|.+. +.+.+..-+.|++|+|++|.|. .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 3456666665432222 12222 445566777777766 55411 1222333455666666666554 2
Q ss_pred cchhccCCCCCcEEeccCC
Q 039149 236 LPEELKLLVNLKCLTLRWT 254 (536)
Q Consensus 236 lp~~i~~L~~L~~L~l~~~ 254 (536)
+-+.+..-+.|++|+++++
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2333444445666666543
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.51 E-value=0.42 Score=41.47 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=51.6
Q ss_pred hcCCCcccEEEeeccccccc----cCcccccCCCCCceEeeccCCCc-----ccchhccCCCCCcEEeccCCCCCCc---
Q 039149 192 FQLMPSLKVLKMSNCVNLTL----KLPLGMSKLGSLELLDVSHTGIR-----ELPEELKLLVNLKCLTLRWTFELNK--- 259 (536)
Q Consensus 192 ~~~l~~Lr~L~L~~~~~i~~----~lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~--- 259 (536)
..+-+.|+.|+|+++..|.+ .+-+.+..-..|+.|+|++|.|. .+-..+..=+.|++|+++.| .+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 55667888888886313431 23344556677888888888765 33344555567788888776 4442
Q ss_pred --cchHHhhcCccCcEEEeccC
Q 039149 260 --IPRQLISNSSRLRVLRMLGT 279 (536)
Q Consensus 260 --lp~~~i~~l~~L~~L~l~~~ 279 (536)
+... +..-+.|++|++.++
T Consensus 116 ~ala~a-L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRS-TLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHH-TTTTCCCSEEECCCC
T ss_pred HHHHHH-HhhCCceeEEECCCC
Confidence 2221 334455777777654
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.40 E-value=31 Score=25.78 Aligned_cols=43 Identities=14% Similarity=0.065 Sum_probs=18.3
Q ss_pred hcchhHHhcCCCcccEEEeeccccccccC-cccccCCCCCceEeecc
Q 039149 185 NMIADGFFQLMPSLKVLKMSNCVNLTLKL-PLGMSKLGSLELLDVSH 230 (536)
Q Consensus 185 ~~~~~~~~~~l~~Lr~L~L~~~~~i~~~l-p~~i~~L~~L~~L~L~~ 230 (536)
+.+....|.++..|+.+.+-.+ ++ .+ ...+.++.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~--v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN--IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT--SS-CCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc--hh-eEcHHHHhccCCccEEEEcC
Confidence 3344444444555554444432 22 22 12344455555554443
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.42 E-value=45 Score=24.85 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=26.1
Q ss_pred ccCCCCCcEEeccCCCCCCccchHHhhcCccCcEEEeccC
Q 039149 240 LKLLVNLKCLTLRWTFELNKIPRQLISNSSRLRVLRMLGT 279 (536)
Q Consensus 240 i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 279 (536)
+..+.+|+.+.+.. .++.+...++.++.+|+.+.+.+.
T Consensus 16 F~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 56667777777765 466676666777777777777653
No 171
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=20.01 E-value=24 Score=21.04 Aligned_cols=9 Identities=33% Similarity=1.091 Sum_probs=6.8
Q ss_pred ccCCCCccc
Q 039149 51 CLYPEDYGI 59 (536)
Q Consensus 51 a~fp~~~~i 59 (536)
++||+||+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 578888876
Done!