BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039151
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 252 bits (644), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 177/282 (62%), Gaps = 10/282 (3%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N DEES Q GLVIR L + SN+R E L +YL NI+ I D+DTR +TR
Sbjct: 62 NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDF- 182
LR+ G+ G + ++ LE +R++ + G+DL +V+ E + W + + W
Sbjct: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 178
Query: 183 ----NTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+ + + V+AYDFG K NILR L GC++ +VP+ A + LK+ PDG+
Sbjct: 179 GGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
SNGPGDP+ YA+ AI K L +PVFGIC+GHQLL A G
Sbjct: 239 SNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASG 280
>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 382
Score = 252 bits (643), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 177/282 (62%), Gaps = 10/282 (3%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N DEES Q GLVIR L + SN+R E L +YL NI+ I D+DTR +TR
Sbjct: 62 NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDF- 182
LR+ G+ G + ++ LE +R++ + G+DL +V+ E + W + + W
Sbjct: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 178
Query: 183 ----NTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+ + + V+AYDFG K NILR L GC++ +VP+ A + LK+ PDG+
Sbjct: 179 GGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
SNGPGDP+ YA+ AI K L +PVFGIC+GHQLL A G
Sbjct: 239 SNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASG 280
>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 382
Score = 251 bits (641), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 177/282 (62%), Gaps = 10/282 (3%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N DEES Q GLVIR L + SN+R E L +YL NI+ I D+DTR +TR
Sbjct: 62 NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFN 183
LR+ G+ G + ++ LE +R++ + G+DL +V+ E + W + + W
Sbjct: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 178
Query: 184 -----THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+ + + V+AYDFG K NILR L GC++ +VP+ A + LK+ PDG+
Sbjct: 179 GGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
SNGPGDP+ YA+ AI K L +PVFGIC+GHQLL A G
Sbjct: 239 SNGPGDPAPDDYAITAIQKFLETDIPVFGICLGHQLLALASG 280
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
Length = 382
Score = 248 bits (633), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 176/282 (62%), Gaps = 10/282 (3%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N DEES Q GLVIR L + SN+R E L +YL NI+ I D+DTR +TR
Sbjct: 62 NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFN 183
LR+ G+ G + ++ LE +R++ + G+DL +V+ E + W + + W
Sbjct: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 178
Query: 184 -----THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+ + + V+AYDFG K NILR L GC++ +VP+ A + LK+ PDG+
Sbjct: 179 GGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
SNGPGDP+ YA+ AI K L +PVFGI +GHQLL A G
Sbjct: 239 SNGPGDPAPCDYAITAIQKFLETDIPVFGISLGHQLLALASG 280
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 379
Score = 248 bits (632), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 176/282 (62%), Gaps = 10/282 (3%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 1 IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 60
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N DEES Q GLVIR L + SN+R E L +YL NI+ I D+DTR +TR
Sbjct: 61 NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 120
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDF- 182
LR+ G+ G + ++ LE +R++ + G+DL +V+ E + W + + W
Sbjct: 121 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 177
Query: 183 ----NTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+ + + V+AYDFG K NILR L GC++ +VP+ A + LK+ PDG+
Sbjct: 178 GGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 237
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
SNGPGDP+ YA+ AI K L +PVFGI +GHQLL A G
Sbjct: 238 SNGPGDPAPCDYAITAIQKFLETDIPVFGIXLGHQLLALASG 279
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
Length = 382
Score = 248 bits (632), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 176/282 (62%), Gaps = 10/282 (3%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N DEES Q GLVIR L + SN+R E L +YL NI+ I D+DTR +TR
Sbjct: 62 NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFN 183
LR+ G+ G + ++ LE +R++ + G+DL +V+ E + W + + W
Sbjct: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 178
Query: 184 -----THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+ + + V+AYDFG K NILR L GC++ +VP+ A + LK+ PDG+
Sbjct: 179 GGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
SNGPGDP+ YA+ AI K L +PVFGI +GHQLL A G
Sbjct: 239 SNGPGDPAPCDYAITAIQKFLETDIPVFGIXLGHQLLALASG 280
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKV 262
H I R L G + ++P+T P E + P G++FS GP + + V
Sbjct: 14 HRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNCEKVLEHYDEFNV 73
Query: 263 PVFGICMGHQLLGQALG 279
P+ GIC+GHQL+ + G
Sbjct: 74 PILGICLGHQLIAKFFG 90
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKV 262
H I R L G + ++P+T P E + P G++FS GP + + V
Sbjct: 34 HRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNCEKVLEHYDEFNV 93
Query: 263 PVFGICMGHQLLGQALG 279
P+ GIC+GHQL+ + G
Sbjct: 94 PILGICLGHQLIAKFFG 110
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 194 VIAYDFGIKHN--ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG---DPSAV 248
V+ DFG ++ I RRL +++P P E LK +P ++ S GP DP A
Sbjct: 2 VLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAP 61
Query: 249 PYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
+ L P+ GIC G QLL Q LG
Sbjct: 62 RPDPRLFSSGL---PLLGICYGXQLLAQELG 89
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 194 VIAYDFGIKHN--ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG---DPSAV 248
V+ DFG ++ I RRL +++P P E LK +P ++ S GP DP A
Sbjct: 2 VLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAP 61
Query: 249 PYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
+ L P+ GIC G QLL Q LG
Sbjct: 62 RPDPRLFSSGL---PLLGICYGMQLLAQELG 89
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 230 KLKPDGVLFSNGPGDPSA---VPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
++ PD ++ S GPG P + ++ ++K L + P+ G+C+GHQ +G A G
Sbjct: 43 RIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFG 95
>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 192
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 204 NILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNGPGDPSAVPYAVAIVKELL 259
N+ +L + G +++ + PA + +K ++ S GPG PS ++ L
Sbjct: 15 NLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLR 74
Query: 260 GKVPVFGICMGHQLLGQALG 279
GK+P+ GIC+GHQ + +A G
Sbjct: 75 GKLPIIGICLGHQAIVEAYG 94
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 203 HNILRRLASYGCQIIVVPSTWPASETLK----LKPDGVLFSNGPGDPSAVPYAVAIVKEL 258
+N++ +L + G Q+++ + A ++ ++ ++ S GPG PS +++ L
Sbjct: 15 YNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRL 74
Query: 259 LGKVPVFGICMGHQLLGQALG 279
G++P+ GIC+GHQ + +A G
Sbjct: 75 RGQLPIIGICLGHQAIVEAYG 95
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 188 NSKTYRVIAYDFGIKHNIL--RRLASYG--CQIIVVPSTWPASETL--KLKPDGVLFSNG 241
N +R++ DFG ++ L RR+ G C++ W +E P G++ S G
Sbjct: 4 NIHKHRILILDFGSQYTQLVARRVRELGVYCEL----WAWDVTEAQIRDFNPSGIILSGG 59
Query: 242 PGDPSA--VPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
P + P A V E VPVFG+C G Q + LG
Sbjct: 60 PESTTEENSPRAPQYVFE--AGVPVFGVCYGMQTMAMQLG 97
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 183 NTHERNSKTYRVIAYDFGIKHN--ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
N ++ +R++ DFG ++ I RR+ G ++P P G++ S
Sbjct: 2 NAMLKDIHQHRILILDFGSQYAQLIARRVREIGVYCELMPCDIDEETIRDFNPHGIILSG 61
Query: 241 GPGDP--SAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
GP S A A + E+ PV GIC G Q + LG
Sbjct: 62 GPETVTLSHTLRAPAFIFEI--GCPVLGICYGMQTMAYQLG 100
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 11/167 (6%)
Query: 96 RCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDI 155
+ +++LGN+ R+++ YD +T R G L+ E Q + R +
Sbjct: 266 KMSKSLGNFFTVRDVLKYYDAET---VRYFLMSGHYRSQLNYSEENLKQARAALERLYTA 322
Query: 156 V-GIDLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRR--LASY 212
+ G D +G E FE D DFNT E S + +D + N L+ +A+
Sbjct: 323 LRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYS-----VLFDMAREVNRLKAEDMAAA 377
Query: 213 GCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL 259
+ L+ +P+ L S D S V A++++ L
Sbjct: 378 NAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRL 424
>pdb|3VEE|A Chain A, Rhodococcus Jostii Rha1 Dypb N246a Variant In Complex With
Heme
pdb|3VEE|B Chain B, Rhodococcus Jostii Rha1 Dypb N246a Variant In Complex With
Heme
pdb|3VEE|C Chain C, Rhodococcus Jostii Rha1 Dypb N246a Variant In Complex With
Heme
pdb|4HOV|A Chain A, Dypb N246a In Complex With Manganese
pdb|4HOV|B Chain B, Dypb N246a In Complex With Manganese
pdb|4HOV|C Chain C, Dypb N246a In Complex With Manganese
Length = 353
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 78 CFLAGLVIRSLSIGTSNWRCAETLG-NYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLS 136
CF G I S ++G++ E G Y R+++G D T T D +LIG
Sbjct: 119 CFELGRQIVS-ALGSAATVVDEVHGFRYFDSRDLLGFVD-GTENPTDDDAADSALIGDED 176
Query: 137 TEESKSD----QELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSK-T 191
+ Q+ L +W+ + + V G+ E VE D + NS T
Sbjct: 177 PDFRGGSYVIVQKYLHDMSAWNTLSTEEQERVIGRTKLENVE-----LDDDAQPSNSHVT 231
Query: 192 YRVIAYDFGIKHNILRRLASYG 213
I D G++H+ILR ++G
Sbjct: 232 LNTIVDDDGVEHDILRDAMAFG 253
>pdb|3VEF|A Chain A, Rhodococcus Jostii Rha1 Dypb N246h Variant In Complex With
Heme
pdb|3VEF|B Chain B, Rhodococcus Jostii Rha1 Dypb N246h Variant In Complex With
Heme
pdb|3VEF|C Chain C, Rhodococcus Jostii Rha1 Dypb N246h Variant In Complex With
Heme
Length = 353
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 78 CFLAGLVIRSLSIGTSNWRCAETLG-NYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLS 136
CF G I S ++G++ E G Y R+++G D T T D +LIG
Sbjct: 119 CFELGRQIVS-ALGSAATVVDEVHGFRYFDSRDLLGFVD-GTENPTDDDAADSALIGDED 176
Query: 137 TEESKSD----QELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSK-T 191
+ Q+ L +W+ + + V G+ E VE D + NS T
Sbjct: 177 PDFRGGSYVIVQKYLHDMSAWNTLSTEEQERVIGRTKLENVE-----LDDDAQPSNSHVT 231
Query: 192 YRVIAYDFGIKHNILRRLASYG 213
I D G++H+ILR ++G
Sbjct: 232 LNTIVDDDGVEHDILRDHMAFG 253
>pdb|3QNR|A Chain A, Dypb From Rhodococcus Jostii Rha1, Crystal Form 1
pdb|3QNR|B Chain B, Dypb From Rhodococcus Jostii Rha1, Crystal Form 1
pdb|3QNR|C Chain C, Dypb From Rhodococcus Jostii Rha1, Crystal Form 1
pdb|3QNS|A Chain A, Dypb From Rhodococcus Jostii Rha1, Crystal Form 2
Length = 353
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 78 CFLAGLVIRSLSIGTSNWRCAETLG-NYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLS 136
CF G I S ++G++ E G Y R+++G D T T D +LIG
Sbjct: 119 CFELGRQIVS-ALGSAATVVDEVHGFRYFDSRDLLGFVD-GTENPTDDDAADSALIGDED 176
Query: 137 TEESKSD----QELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSK-T 191
+ Q+ L +W+ + + V G+ E VE D + NS T
Sbjct: 177 PDFRGGSYVIVQKYLHDMSAWNTLSTEEQERVIGRTKLENVE-----LDDDAQPSNSHVT 231
Query: 192 YRVIAYDFGIKHNILRRLASYG 213
I D G++H+ILR ++G
Sbjct: 232 LNTIVDDDGVEHDILRDNMAFG 253
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 22/133 (16%)
Query: 41 GYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIG------TSN 94
GY L +PS GQF + +N E C+L G I +L+ T+
Sbjct: 66 GYVSSLVEPSKVGQF---------DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 95 WRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDG----SLIGVLSTEESKSD--QELLE 148
+ E + NY+ R IM D ++ + R G L+ + + + D +EL +
Sbjct: 117 VKTKELIKNYITAR-IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 149 MSRSWDIVGIDLI 161
+ +++ ++ DLI
Sbjct: 176 LYQTYHVLVGDLI 188
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 22/133 (16%)
Query: 41 GYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIG------TSN 94
GY L +PS GQF + +N E C+L G I +L+ T+
Sbjct: 66 GYVSSLVEPSKVGQF---------DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 95 WRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDG----SLIGVLSTEESKSD--QELLE 148
+ E + NY+ R IM D ++ + R G L+ + + + D +EL +
Sbjct: 117 VKTKELIKNYITAR-IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 149 MSRSWDIVGIDLI 161
+ +++ ++ DLI
Sbjct: 176 LYQTYHVLVGDLI 188
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 78 CFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGV 134
F A + S+ G WR +G++L E N + V R + +RQ G+ + V
Sbjct: 62 AFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMV 118
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 78 CFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGV 134
F A + S+ G WR +G++L E N + V R + +RQ G+ + V
Sbjct: 42 AFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMV 98
>pdb|3VEC|A Chain A, Rhodococcus Jostii Rha1 Dypb D153a Variant In Complex With
Heme
pdb|3VEC|B Chain B, Rhodococcus Jostii Rha1 Dypb D153a Variant In Complex With
Heme
pdb|3VEC|C Chain C, Rhodococcus Jostii Rha1 Dypb D153a Variant In Complex With
Heme
Length = 353
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 13/142 (9%)
Query: 78 CFLAGLVIRSLSIGTSNWRCAETLG-NYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLS 136
CF G I S ++G++ E G Y R+++G T T D +LIG
Sbjct: 119 CFELGRQIVS-ALGSAATVVDEVHGFRYFDSRDLLGFV-AGTENPTDDDAADSALIGDED 176
Query: 137 TEESKSD----QELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSK-T 191
+ Q+ L +W+ + + V G+ E VE D + NS T
Sbjct: 177 PDFRGGSYVIVQKYLHDMSAWNTLSTEEQERVIGRTKLENVE-----LDDDAQPSNSHVT 231
Query: 192 YRVIAYDFGIKHNILRRLASYG 213
I D G++H+ILR ++G
Sbjct: 232 LNTIVDDDGVEHDILRDNMAFG 253
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 78 CFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGV 134
F A + S+ G WR +G++L E N + V R + +RQ G+ + V
Sbjct: 42 AFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMV 98
>pdb|3FIJ|A Chain A, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|B Chain B, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|C Chain C, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|D Chain D, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|E Chain E, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|F Chain F, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|G Chain G, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|H Chain H, Crystal Structure Of A Uncharacterized Protein Lin1909
Length = 254
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 250 YAVAIVKELL--GKVPVFGICMGHQLLGQALG 279
Y +A+V+ L GK P+F IC G QL+ ALG
Sbjct: 96 YEIALVRAALDAGK-PIFAICRGXQLVNVALG 126
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 234 DGVLFSNGPGDPS-----AVPYAVAIVKELL--GKVPVFGICMGHQLLGQALG 279
D V+ GPGDPS + A ++ L+ GK P +C+ HQ+L LG
Sbjct: 488 DVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGK-PFMAVCLSHQILNAILG 539
>pdb|3M3P|A Chain A, Crystal Structure Of Glutamine Amido Transferase From
Methylobacillus Flagellatus
Length = 250
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 249 PYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
P +A++++ + +VPV G C+G QLL +A G
Sbjct: 69 PTLLALIRDAVAQRVPVIGHCLGGQLLAKAXG 100
>pdb|3ZHE|A Chain A, Structure Of The C. Elegans Smg5-smg7 Complex
pdb|3ZHE|C Chain C, Structure Of The C. Elegans Smg5-smg7 Complex
Length = 420
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 43 QEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLG 102
QE+L+ P ++ + N +IG+ DEE ++C G R++ + + R L
Sbjct: 94 QEMLSLPD--DKYPALWNMYIGDFHRYMPDEEIQKCLAVGYYSRAIDLDPNQGRAFHVLA 151
Query: 103 NYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLE 148
A+ N + ++LR ++G L+ K ELLE
Sbjct: 152 GLRADLN-----------VAQKLRL--MILGQLADAPYKKGTELLE 184
>pdb|3VDH|A Chain A, Crystal Structure Of A Putative Beta-1,4-Endoglucanase
CELLULASE From Prevotella Bryantii
pdb|3VDH|B Chain B, Crystal Structure Of A Putative Beta-1,4-Endoglucanase
CELLULASE From Prevotella Bryantii
Length = 353
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 154 DIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYG 213
D V LI V +P+ + +TK WD H ++ + ++ F I+ ++G
Sbjct: 227 DAVNNHLIVQVHSYDPWNFF-NTKTTWDSECHNTLTEIFSALSKKFTTIPYIIGEYGTHG 285
Query: 214 CQIIVVPSTWPASETLKLKPD 234
I V + PA E +KL D
Sbjct: 286 ESDISVSKSSPA-EKIKLAAD 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,839,602
Number of Sequences: 62578
Number of extensions: 367748
Number of successful extensions: 978
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 37
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)