BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039151
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74587|CARA_SYNY3 Carbamoyl-phosphate synthase small chain OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=carA PE=3 SV=2
Length = 384
Score = 283 bits (724), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 139/275 (50%), Positives = 188/275 (68%), Gaps = 3/275 (1%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVL DG+ + SFGA GT VGEVVFNT +TGYQE++TDPSY GQ V T P +GNTG
Sbjct: 9 ALLVLADGTPYPGWSFGADGTTVGEVVFNTGMTGYQEVMTDPSYCGQIVTFTYPELGNTG 68
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
VN +DEES + G+V R+++ SNWR ++L +YL E I+GIY +DTRA+TR+LR
Sbjct: 69 VNAEDEESIHPHVKGVVARNITRRPSNWRSTQSLPDYLVEHKIIGIYGIDTRALTRKLRS 128
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFN--TH 185
G++ G +STE + + L + + + G++L+ +V+ E +EW +ST W F
Sbjct: 129 IGAMNGGISTEILEPEALLHHIQAAPSMAGLNLVKEVTTHEVYEWTDSTNDHWQFGPVAE 188
Query: 186 ERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP 245
++ V+A DFG+K NILRRLASYGC++IVVP++ A+E L+ PDG+ SNGPGDP
Sbjct: 189 QQGQPPLTVVALDFGVKRNILRRLASYGCRVIVVPASTSAAEILQYNPDGIFLSNGPGDP 248
Query: 246 SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
SAV + KELL K P+FGICMGHQ+LG +LG
Sbjct: 249 SAVEEGIVTTKELLAAKKPMFGICMGHQVLGLSLG 283
>sp|Q8YXQ7|CARA_NOSS1 Carbamoyl-phosphate synthase small chain OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=carA PE=3 SV=1
Length = 388
Score = 276 bits (707), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/275 (49%), Positives = 189/275 (68%), Gaps = 3/275 (1%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVL DG+ +R SFGA+GT +GEVVFNT +TGYQE+LTDPSY GQ V+ T P +GNTG
Sbjct: 9 ALLVLADGTAYRGWSFGATGTTIGEVVFNTGMTGYQEVLTDPSYRGQIVVFTYPELGNTG 68
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
VN +DEES + + G + R++ SNWR ++L +YL + +I GI+ +DTRA+TR++R
Sbjct: 69 VNPEDEESARPQVRGAIARNICHKPSNWRSTQSLPDYLKQHHIPGIFGIDTRALTRKIRM 128
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHE- 186
G++ G +STE + L ++ + ++ G++L+ +V+ +EW + T W+FN
Sbjct: 129 YGAMNGGISTEILDEAELLEQVQAAPNMAGLNLVREVTTSTVYEWSDPTTAVWEFNPDGT 188
Query: 187 -RNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP 245
+N ++ V+A DFG+K NILRRLASYGC++IVVP+ E LK PDG+ SNGPGDP
Sbjct: 189 VKNGESLTVVALDFGVKRNILRRLASYGCRVIVVPADTSPEEILKYNPDGIFLSNGPGDP 248
Query: 246 SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
SAV + K LL + P+FGICMGHQ+LG ALG
Sbjct: 249 SAVTEGITTAKALLESEKPIFGICMGHQILGHALG 283
>sp|Q3A450|CARA_PELCD Carbamoyl-phosphate synthase small chain OS=Pelobacter carbinolicus
(strain DSM 2380 / Gra Bd 1) GN=carA PE=3 SV=1
Length = 376
Score = 271 bits (692), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 130/275 (47%), Positives = 180/275 (65%), Gaps = 6/275 (2%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A L L DG ++ K+FGA G GEVVFNTS+TGYQEILTDPSY G+ V MT P IGN G
Sbjct: 3 AILALADGRVFTGKAFGARGEVTGEVVFNTSMTGYQEILTDPSYCGEIVTMTYPLIGNYG 62
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
+N +D ES + L+G +++ SNWR TL +YL + I+GI +DTRA+ R +R
Sbjct: 63 INPEDVESGRPHLSGFIVKEACPYPSNWRSTTTLDDYLKQNQIVGIQGIDTRALVRHIRD 122
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFN---T 184
+G+ G++S+ + + + + ++ IVG DL+ +V+ KEP+ W E WD +
Sbjct: 123 NGAQTGIISSIDLDPESLVEKARKAPSIVGRDLVKEVTCKEPYHWTEGP---WDLSEGYQ 179
Query: 185 HERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGD 244
+ Y+V+AYDFGIK NILR L + GC + VVP+T PA + + + PDGV SNGPGD
Sbjct: 180 QQTGEPRYKVVAYDFGIKRNILRNLVAIGCDVTVVPATTPAQDVMAMNPDGVFLSNGPGD 239
Query: 245 PSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
P + YA +++LLGK+P+FGIC+GHQLL ALG
Sbjct: 240 PEPIQYAQENIRQLLGKMPIFGICLGHQLLALALG 274
>sp|Q5N0L0|CARA_SYNP6 Carbamoyl-phosphate synthase small chain OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=carA
PE=3 SV=1
Length = 391
Score = 266 bits (681), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 131/273 (47%), Positives = 186/273 (68%), Gaps = 2/273 (0%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVL DGS++ + GA+GT +GEVVFNT +TGYQE+LTDPSY GQ V T P +GNTG
Sbjct: 19 ALLVLADGSVFHGYACGAAGTVIGEVVFNTGMTGYQEVLTDPSYCGQIVSFTYPELGNTG 78
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
VN +DEES + ++GL+ R+++ SNWR +L +YL + NI+GIY +DTRA+T+ LR
Sbjct: 79 VNPEDEESARPQVSGLIARNVARRHSNWRADRSLPDYLQQHNIVGIYGIDTRALTQHLRS 138
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHER 187
G++ G +ST ++ E+ + + G++L+ V+ P+EW T W+F
Sbjct: 139 TGAMNGGISTTILDPEELWAEVKAAPSMEGLNLVDQVTTDRPYEWQTPTSQTWEF-IEGP 197
Query: 188 NSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA 247
+++ V+A DFG+K NILRRLASYGC++IVVP+ P E L+ +PDGV SNGPGDP+
Sbjct: 198 TTESLTVVAIDFGVKRNILRRLASYGCRVIVVPADTPIEEILRHEPDGVFLSNGPGDPAT 257
Query: 248 VPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
V ++ + LL +P+FGIC+GHQ+LG ALG
Sbjct: 258 VKNGISTAQALLQTGLPLFGICLGHQILGSALG 290
>sp|Q31LB7|CARA_SYNE7 Carbamoyl-phosphate synthase small chain OS=Synechococcus elongatus
(strain PCC 7942) GN=carA PE=3 SV=1
Length = 391
Score = 266 bits (680), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/273 (47%), Positives = 186/273 (68%), Gaps = 2/273 (0%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVL DGS++ + GA+GT +GEVVFNT +TGYQE+LTDPSY GQ V T P +GNTG
Sbjct: 19 ALLVLADGSVFHGYACGAAGTVIGEVVFNTGMTGYQEVLTDPSYCGQIVSFTYPELGNTG 78
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
VN +DEES + ++GL+ R+++ SNWR +L +YL + NI+GIY +DTRA+T+ LR
Sbjct: 79 VNPEDEESARPQVSGLIARNVARRHSNWRADRSLPDYLQQHNIVGIYGIDTRALTQHLRS 138
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHER 187
G++ G +ST ++ E+ + + G++L+ V+ P+EW T W+F
Sbjct: 139 TGAMNGGISTTILDPEELWAEVKAAPSMEGLNLVDQVTTDRPYEWQTPTSQTWEF-IEGP 197
Query: 188 NSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA 247
+++ V+A DFG+K NILRRLASYGC++IVVP+ P E L+ +PDGV SNGPGDP+
Sbjct: 198 TTESLTVVAIDFGVKRNILRRLASYGCRVIVVPADTPIEEILRHEPDGVFLSNGPGDPAT 257
Query: 248 VPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
V ++ + LL +P+FGIC+GHQ+LG ALG
Sbjct: 258 VKNGISTAQALLQTGLPLFGICLGHQILGLALG 290
>sp|C5BQ30|CARA_TERTT Carbamoyl-phosphate synthase small chain OS=Teredinibacter turnerae
(strain ATCC 39867 / T7901) GN=carA PE=3 SV=1
Length = 386
Score = 263 bits (673), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 136/276 (49%), Positives = 183/276 (66%), Gaps = 8/276 (2%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVLEDGS++R S GA+G VGEVVFNTS+TGYQEILTDPSYA Q V +T PHIGNTG
Sbjct: 13 AILVLEDGSVFRGVSIGATGKSVGEVVFNTSITGYQEILTDPSYARQIVTLTYPHIGNTG 72
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
N +DEE + + GLVIR L + SN+R +++L YL+ +NI+GI D+DTR +TR LR
Sbjct: 73 TNSEDEECKTIWATGLVIRDLPLLASNFRNSQSLDQYLSSKNILGIADIDTRRLTRLLRD 132
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEPFEWVESTKPDWDFNT-- 184
G+L G + + + E LE +R + + G+DL +VS K+ ++W + + W +
Sbjct: 133 KGALAGCIMAGDV-DEAEALETARGFAGLQGMDLAKEVSTKDTYQWRDGS---WKLGSGY 188
Query: 185 HERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGD 244
K + V+AYD+G K NILR L GC + VVP+ PA++ L + PDGV SNGPGD
Sbjct: 189 APLAEKRFNVVAYDYGAKSNILRMLVDRGCDLTVVPAQTPAADVLAMNPDGVFLSNGPGD 248
Query: 245 PSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
P YA+ +K LL + +P+FGIC+GHQLL A G
Sbjct: 249 PEPCDYAIDAIKVLLNENMPIFGICLGHQLLALASG 284
>sp|Q8DKU5|CARA_THEEB Carbamoyl-phosphate synthase small chain OS=Thermosynechococcus
elongatus (strain BP-1) GN=carA PE=3 SV=1
Length = 382
Score = 261 bits (667), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 132/274 (48%), Positives = 179/274 (65%), Gaps = 2/274 (0%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVL DGS++R SFGA GT +GEVVFNT +TGYQE+LTDPSY GQ V T P +GNTG
Sbjct: 5 ALLVLADGSVFRGFSFGAPGTAIGEVVFNTGMTGYQEVLTDPSYYGQIVTFTYPELGNTG 64
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
+D+ES + + G V R++ SNWR ++L +YL I IY +DTRA+TR++R
Sbjct: 65 TTPEDDESDRPQVRGAVARNICDIPSNWRSQQSLPDYLKAHRIPAIYGIDTRALTRKIRT 124
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHER 187
G++ G +STE + L ++ + + G +L V+ + P+EW E T W+F
Sbjct: 125 VGAMNGGISTEILDPVELLQKVLAAPSMQGQNLAKVVTTRTPYEWTEPTPAAWEFRPQTA 184
Query: 188 NSK-TYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS 246
+ V+A DFG+K NILRRLASYGC++IVVP+ PA L PDG+ SNGPGDP+
Sbjct: 185 TEEPPLTVVAIDFGVKRNILRRLASYGCRVIVVPADTPAETILSYDPDGIFLSNGPGDPA 244
Query: 247 AVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
AV + ++LLG + P+FGIC+GHQLLG +LG
Sbjct: 245 AVQEGIETTRKLLGAQRPMFGICLGHQLLGLSLG 278
>sp|Q87EB9|CARA_XYLFT Carbamoyl-phosphate synthase small chain OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=carA PE=3 SV=1
Length = 374
Score = 261 bits (667), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 134/274 (48%), Positives = 179/274 (65%), Gaps = 2/274 (0%)
Query: 7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
+A LVLEDG+++ + GA+G VGEVVFNT+LTGYQEILTDPSYA Q V +T PHIGNT
Sbjct: 4 HAILVLEDGTVFEGDAVGANGLSVGEVVFNTALTGYQEILTDPSYAYQLVTLTYPHIGNT 63
Query: 67 GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
G D+E+ + + AGL++R + SNWR +L ++LA R ++ I +DTR +TR LR
Sbjct: 64 GCTDQDDEANKVWAAGLIVRDVPRRPSNWRSQISLSDWLAARGVVAIAGIDTRKLTRILR 123
Query: 127 QDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHE 186
+ G+ G L E + + I G+DL VS K+ + W E + D D N +
Sbjct: 124 EKGAQHGALMAGEIDVGKAQDAAHQFAGIKGMDLAKVVSTKQGYSWYEG-QLDLDRNECK 182
Query: 187 RNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS 246
R + Y+V+AYD+G+K NILR LA GC + VVP+ PA E L L PDGV SNGPGDP
Sbjct: 183 RAAPQYKVVAYDYGVKLNILRMLAERGCDLTVVPAQTPADEVLALCPDGVFLSNGPGDPE 242
Query: 247 AVPYAVAIVKE-LLGKVPVFGICMGHQLLGQALG 279
YAVA +K ++ +VP+FGIC+GHQLL QA+G
Sbjct: 243 PCDYAVAAIKTFIMRRVPIFGICLGHQLLAQAVG 276
>sp|P38099|CARA_PSEST Carbamoyl-phosphate synthase small chain OS=Pseudomonas stutzeri
GN=carA PE=3 SV=1
Length = 384
Score = 261 bits (666), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 133/279 (47%), Positives = 183/279 (65%), Gaps = 10/279 (3%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A L L DGSI+R +S GA G +GEVVFNT++TGYQEILTDPSYA Q V +T PH+GNTG
Sbjct: 9 AILALADGSIFRGESIGADGQTIGEVVFNTAMTGYQEILTDPSYAKQIVTLTYPHVGNTG 68
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
D ES + + AGLVIR L + SNWR ++L +YL E + + I +DTR +TR LR+
Sbjct: 69 TTPQDAESWKVWAAGLVIRDLPLLASNWRNKQSLPDYLKENDTVAIAGIDTRRLTRILRE 128
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFNTHE 186
G+ G + ++++ LE++RS+ + G+DL +VS KE +EW S W+ T
Sbjct: 129 KGAQNGCILAGADATEEKALELARSFPGLKGMDLAKEVSVKERYEWRYSL---WNLETDS 185
Query: 187 R-----NSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG 241
+ Y V+AYD+G+K+NILR L + GC++ V+P+ PASE L L PDG+ +NG
Sbjct: 186 HPEIPASELPYHVVAYDYGVKYNILRMLVARGCRVTVLPAQTPASEALALNPDGIFLANG 245
Query: 242 PGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
PGDP YA+ ++E+L +PVFGIC+GHQLL A G
Sbjct: 246 PGDPEPCDYAIRAIQEVLETDIPVFGICLGHQLLALASG 284
>sp|Q87WP3|CARA_PSESM Carbamoyl-phosphate synthase small chain OS=Pseudomonas syringae
pv. tomato (strain DC3000) GN=carA PE=3 SV=1
Length = 378
Score = 261 bits (666), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 136/279 (48%), Positives = 181/279 (64%), Gaps = 10/279 (3%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A L L DGSI+R ++ GA G VGEVVFNT++TGYQEILTDPSYA Q V +T PHIGNTG
Sbjct: 5 AILALADGSIFRGEAIGADGQTVGEVVFNTAMTGYQEILTDPSYAQQIVTLTYPHIGNTG 64
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
+D ES + + AGLVIR L + SNWR +LG+YL N++ I +DTR +TR LR+
Sbjct: 65 TTPEDAESDRVWSAGLVIRDLPLVASNWRNKMSLGDYLKANNVVAIAGIDTRRLTRILRE 124
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFNTHE 186
G+ G + ++ S++ + +R + + G+DL +VS K+ +EW S W+ T
Sbjct: 125 KGAQNGCIMAGDNISEEAAIAAARGFPGLKGMDLAKEVSTKDTYEWRHSV---WNLQTDS 181
Query: 187 R-----NSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG 241
+ Y V+AYD+G+K NILR L GC++ VVP+ PASE L KPDGV SNG
Sbjct: 182 HPEIAASELPYHVVAYDYGVKVNILRMLVERGCRVTVVPAQTPASEVLAYKPDGVFLSNG 241
Query: 242 PGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
PGDP YA+ +K++L +VPVFGIC+GHQLL A G
Sbjct: 242 PGDPEPCDYAIKAIKQVLETEVPVFGICLGHQLLALAAG 280
>sp|Q7N8W2|CARA_PHOLL Carbamoyl-phosphate synthase small chain OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=carA PE=3
SV=1
Length = 387
Score = 261 bits (666), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 135/282 (47%), Positives = 181/282 (64%), Gaps = 10/282 (3%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA G VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSAILVLEDGTQFHGRAIGAEGAAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N GVN D+ES + GLVIR L + TSN+RC ETL +YL NI+ I D+DTR +TR
Sbjct: 62 NVGVNSVDKESLKVQAQGLVIRDLPLLTSNFRCEETLSDYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDF- 182
LR+ GS G + + Q LE ++++ + G+DL +V+ K+ + W++ + W
Sbjct: 122 LREKGSQNGCIIAGKQIDAQVALEKAQAFPGLEGMDLAKEVTTKQIYPWLQGS---WKLA 178
Query: 183 ----NTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+ Y V+AYDFG K NILR L GC++ VVP+ A + LKL PDG+
Sbjct: 179 GGLPEDKQEQDLPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAQTSAEDVLKLNPDGIFL 238
Query: 239 SNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
SNGPGDP+ YA+ VK LL ++P+FGIC+GHQLL A G
Sbjct: 239 SNGPGDPAPCGYAIDAVKTLLETEIPIFGICLGHQLLALASG 280
>sp|Q9CKV3|CARA_PASMU Carbamoyl-phosphate synthase small chain OS=Pasteurella multocida
(strain Pm70) GN=carA PE=3 SV=1
Length = 385
Score = 260 bits (665), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 134/276 (48%), Positives = 177/276 (64%), Gaps = 8/276 (2%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVL DGS++ S GA G VGEVVFNT++TGYQEILTDPSY Q V +T PHIGNTG
Sbjct: 5 AILVLADGSVFHGTSIGAKGHTVGEVVFNTAMTGYQEILTDPSYFRQIVTLTYPHIGNTG 64
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
N +D E+ + +GL+IR L + SN+R + +L +YL N++ I D+DTR +TR LR
Sbjct: 65 TNLEDCEANHVYASGLIIRDLPLLHSNFRSSMSLRDYLQTHNVVAIADIDTRRLTRILRD 124
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEPFEWVESTKPDWDFNTH- 185
G+ G + T E + + LE+++S+ + G DL +VS E F W T W
Sbjct: 125 KGAQAGCIMTGEI-DEAKALELAKSFGSMAGKDLAQEVSTGEIFTW---TSGQWQLGKGF 180
Query: 186 -ERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGD 244
E+ + V+AYDFG+KHNILR LA GC+I VVP+ A + L L PDG+ SNGPGD
Sbjct: 181 IEQTQAEFNVVAYDFGVKHNILRMLAERGCKITVVPAKTSAEQVLALNPDGIFLSNGPGD 240
Query: 245 PSAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
P YA++ ++ LL K P+FGIC+GHQLLG A G
Sbjct: 241 PEPCDYAISAIQTLLASKKPIFGICLGHQLLGLAAG 276
>sp|B8GNX4|CARA_THISH Carbamoyl-phosphate synthase small chain OS=Thioalkalivibrio sp.
(strain HL-EbGR7) GN=carA PE=3 SV=1
Length = 379
Score = 260 bits (665), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 135/278 (48%), Positives = 179/278 (64%), Gaps = 3/278 (1%)
Query: 4 NVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHI 63
N A L LEDGS++ S GA G VGEVVFNT++TGYQEILTDPSYA Q V +T PHI
Sbjct: 2 NFTPALLALEDGSLFHGISIGAPGQTVGEVVFNTAMTGYQEILTDPSYARQIVTLTYPHI 61
Query: 64 GNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITR 123
GNTGVN +DEES AGLVIR L S+WR E+L +YL ++ I ++DTR +TR
Sbjct: 62 GNTGVNPEDEESAGVHAAGLVIRDLPPLVSSWRSRESLPDYLTRFGVVAIANIDTRRLTR 121
Query: 124 RLRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDF 182
LR+ G+ G + E +Q L +R + + G+DL +VS E ++W E T
Sbjct: 122 ILREKGAQNGCIMAGEI-DEQAALAAARGFPGLKGMDLAKEVSTAEIYDWTEGTWQLGSG 180
Query: 183 NTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGP 242
+ S Y+V+AYDFG+K NILR L GCQ+ VVP+ PA++ L ++PDGV SNGP
Sbjct: 181 HAPAPASSPYKVVAYDFGVKRNILRMLVDRGCQVTVVPAQTPAAQVLAMQPDGVFLSNGP 240
Query: 243 GDPSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
GDP YA++ ++E++ +P +GIC+GHQLLG A G
Sbjct: 241 GDPEPCDYAISAIREIVDTGIPTYGICLGHQLLGLASG 278
>sp|Q9PEC2|CARA_XYLFA Carbamoyl-phosphate synthase small chain OS=Xylella fastidiosa
(strain 9a5c) GN=carA PE=3 SV=2
Length = 374
Score = 260 bits (664), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 133/273 (48%), Positives = 177/273 (64%), Gaps = 2/273 (0%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVLEDG+++ + GA+G VGEVVFNTSLTGYQE+LTDPSYA Q V +T PHIGNTG
Sbjct: 5 AILVLEDGTVFEGDAVGANGLSVGEVVFNTSLTGYQEVLTDPSYAYQLVTLTYPHIGNTG 64
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
D+E+ + + AGL++R + SNWR +L ++LA R ++ I +DTR +TR LR+
Sbjct: 65 CTDQDDEANKVWAAGLIVRDVPRRPSNWRSQISLSDWLAARGVVAIAGIDTRKLTRILRE 124
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHER 187
G+ G L E D+ + I G+DL VS K+ + W E + D D N +R
Sbjct: 125 KGAQHGALMAGEIDVDRAQDAARQFTGIKGMDLAKVVSTKQAYSWYEG-QLDLDRNEWKR 183
Query: 188 NSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA 247
+ Y+V+AYD+G+K NILR LA GC + VVP+ P E L L PDGV SNGPGDP
Sbjct: 184 AAPQYKVVAYDYGVKLNILRMLAERGCDLTVVPAQTPVDEVLALCPDGVFLSNGPGDPEP 243
Query: 248 VPYAVAIVKE-LLGKVPVFGICMGHQLLGQALG 279
YAVA +K ++ +VP+FGIC+GHQLL Q +G
Sbjct: 244 CDYAVAAIKTFIMRRVPIFGICLGHQLLAQTVG 276
>sp|Q7U7F9|CARA_SYNPX Carbamoyl-phosphate synthase small chain OS=Synechococcus sp.
(strain WH8102) GN=carA PE=3 SV=1
Length = 383
Score = 258 bits (659), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/275 (45%), Positives = 175/275 (63%), Gaps = 2/275 (0%)
Query: 7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
A LVL DG++ +FG G+ VGEVVFNT +TGYQE+LTDPSYAGQ V T P +GNT
Sbjct: 8 QAHLVLADGTVLTGDAFGHRGSVVGEVVFNTGMTGYQEVLTDPSYAGQLVTFTYPELGNT 67
Query: 67 GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
GVN DD+E+ G++ R L+ SNWRC+E+L N++ ++GI VDTRA+ RRLR
Sbjct: 68 GVNGDDQEADHPHARGVIARQLAPCASNWRCSESLDNWMERHGLVGICGVDTRALVRRLR 127
Query: 127 QDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHE 186
G++ GV+S++ L E+ + + G++L S VS EP+EW + +D +
Sbjct: 128 DGGAINGVISSDGRSPADLLAEVRHAPSMEGLNLASQVSTTEPYEWSSPCRVGFDQRLKQ 187
Query: 187 RNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS 246
YRV+A DFGIK IL RL ++GC + V+PS + +P+GV SNGPGDP+
Sbjct: 188 HPDLPYRVVAIDFGIKRAILDRLVAHGCAVTVLPSDADLDTVMSHQPEGVFLSNGPGDPA 247
Query: 247 AVPYAVAIVKELL--GKVPVFGICMGHQLLGQALG 279
AV + + + LL +P+FGIC+GHQ+LG ALG
Sbjct: 248 AVDSGIDLARSLLERANLPLFGICLGHQILGLALG 282
>sp|Q8FLB1|CARA_ECOL6 Carbamoyl-phosphate synthase small chain OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=carA PE=3 SV=2
Length = 382
Score = 257 bits (656), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 178/282 (63%), Gaps = 10/282 (3%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N DEES Q GLVIR L + SN+R E L +YL NI+ I D+DTR +TR
Sbjct: 62 NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFN 183
LR+ G+ G + ++ LE +R++ + G+DL +V+ EP+ W + + W
Sbjct: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEPYSWTQGS---WTLT 178
Query: 184 -----THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+ + Y V+AYDFG K NILR L GC++ +VP+ A + LK+ PDG+
Sbjct: 179 GGLPEAKKEDELPYHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
SNGPGDP+ YA+ AI K L +PVFGIC+GHQLL A G
Sbjct: 239 SNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASG 280
>sp|Q88DU5|CARA_PSEPK Carbamoyl-phosphate synthase small chain OS=Pseudomonas putida
(strain KT2440) GN=carA PE=3 SV=1
Length = 378
Score = 257 bits (656), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 135/279 (48%), Positives = 180/279 (64%), Gaps = 10/279 (3%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A L L DGSI+R ++ GA G VGEVVFNT++TGYQEILTDPSYA Q V +T PHIGNTG
Sbjct: 5 AILALADGSIFRGEAIGADGQTVGEVVFNTAMTGYQEILTDPSYAQQIVTLTYPHIGNTG 64
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
+D ES + + AGLVIR L + SNWR ++L YL N++ I +DTR +TR LR+
Sbjct: 65 TTPEDAESSRVWSAGLVIRDLPLLASNWRNTQSLPEYLKANNVVAIAGIDTRRLTRILRE 124
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFNTHE 186
G+ G + ++ S++ + +R + + G+DL VS KE +EW S W+ T
Sbjct: 125 KGAQNGCILAGDNISEEAAIAAARGFPGLKGMDLAKVVSTKERYEWRSSV---WELKTDS 181
Query: 187 RNS-----KTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG 241
+ Y V+A+D+G+K NILR L + GC++ VVP+ PASE L L PDGV SNG
Sbjct: 182 HPTIDAADLPYHVVAFDYGVKLNILRMLVARGCRVTVVPAQTPASEVLALNPDGVFLSNG 241
Query: 242 PGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
PGDP YA+ +KE+L ++PVFGIC+GHQLL A G
Sbjct: 242 PGDPEPCDYAIQAIKEILETEIPVFGICLGHQLLALASG 280
>sp|P38098|CARA_PSEAE Carbamoyl-phosphate synthase small chain OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=carA PE=3 SV=1
Length = 378
Score = 256 bits (655), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 130/279 (46%), Positives = 178/279 (63%), Gaps = 10/279 (3%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A L L DGSI+R ++ GA G VGEVVFNT++TGYQEILTDPSYA Q V +T PHIGNTG
Sbjct: 5 AILALADGSIFRGEAIGADGQTVGEVVFNTAMTGYQEILTDPSYAQQIVTLTYPHIGNTG 64
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
+D E+ + + AGL+IR L + SNWR ++L +YL + I +DTR +TR LR+
Sbjct: 65 TTPEDAEANRVWAAGLIIRDLPLIASNWRSKQSLPDYLKANGTVAIAGIDTRRLTRILRE 124
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFNTHE 186
GS G + +++ LE++R++ + G+DL +V+ E +EW S W+ +
Sbjct: 125 KGSQNGCILAGADATEERALELARAFPGLKGMDLAKEVTTAERYEWRSSV---WNLESDS 181
Query: 187 R-----NSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG 241
Y V+AYD+G+K NILR L + GC++ VVP+ PASE L L PDG+ SNG
Sbjct: 182 HPEIPAGELPYHVVAYDYGVKLNILRMLVARGCRLTVVPAQTPASEVLALNPDGIFLSNG 241
Query: 242 PGDPSAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
PGDP YA+ ++E L ++PVFGIC+GHQLL A G
Sbjct: 242 PGDPEPCDYAIQAIREFLDTEIPVFGICLGHQLLALASG 280
>sp|Q87SF4|CARA_VIBPA Carbamoyl-phosphate synthase small chain OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=carA PE=3 SV=1
Length = 379
Score = 256 bits (653), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 133/279 (47%), Positives = 176/279 (63%), Gaps = 10/279 (3%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVLEDG+++R S GA G VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIGNTG
Sbjct: 5 ALLVLEDGTVFRGVSIGADGVSVGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHIGNTG 64
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
N +DEES GLVIR L + SN+R ++L +YL +NI+GI D+DTR +TR LR+
Sbjct: 65 TNSEDEESSSIHAQGLVIRDLPLIASNFRNEQSLSDYLKSQNIVGIADIDTRKLTRILRE 124
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFNTHE 186
G+ G + + + L ++ + + G+DL +V+ KE ++W + + W +
Sbjct: 125 KGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKEAYQWKQGS---WTLESGL 181
Query: 187 RNSK-----TYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG 241
+K Y V+AYDFG K NILR L GC++ VVP+ A E L L PDGV SNG
Sbjct: 182 PEAKDDSELPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAETSAEEVLALNPDGVFLSNG 241
Query: 242 PGDPSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
PGDP YA+ K L K +P+FGIC+GHQ+L A G
Sbjct: 242 PGDPEPCTYAIEATKVFLEKGLPIFGICLGHQILALASG 280
>sp|Q9JVZ6|CARA_NEIMA Carbamoyl-phosphate synthase small chain OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=carA PE=3
SV=1
Length = 377
Score = 255 bits (651), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 133/277 (48%), Positives = 178/277 (64%), Gaps = 9/277 (3%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVL DGS++ S G G+ GEVVFNTS+TGYQEILTDPSY Q V +T PHIGNTG
Sbjct: 5 ALLVLADGSVFHGTSIGYEGSTSGEVVFNTSMTGYQEILTDPSYCKQIVTLTYPHIGNTG 64
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
N +DEESR + AGL+IR L + SN+R +E+L +YL + I D+DTR +T LR+
Sbjct: 65 TNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLRE 124
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEPFEWVESTKPDWDFNTH- 185
G+ G + T + ++ E+ ++ +VG DL +VS E +EW E +W
Sbjct: 125 KGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTETYEWTEG---EWALGKGF 181
Query: 186 -ERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGD 244
+ + Y V+AYDFG+K NILR LAS GC++ VVP+ A + L L PDGV SNGPGD
Sbjct: 182 VTPDEQPYHVVAYDFGVKTNILRMLASRGCRLTVVPAQTSAQDVLALNPDGVFLSNGPGD 241
Query: 245 PSAVPYAVAIVKELL--GKVPVFGICMGHQLLGQALG 279
P YA+ V++L+ GK P+FGIC+GHQL+ A+G
Sbjct: 242 PEPCTYAIEAVQKLMESGK-PIFGICLGHQLISLAIG 277
>sp|Q9JXX4|CARA_NEIMB Carbamoyl-phosphate synthase small chain OS=Neisseria meningitidis
serogroup B (strain MC58) GN=carA PE=3 SV=1
Length = 377
Score = 254 bits (650), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 133/277 (48%), Positives = 178/277 (64%), Gaps = 9/277 (3%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVL DGS++ S G G+ GEVVFNTS+TGYQEILTDPSY Q V +T PHIGNTG
Sbjct: 5 ALLVLADGSVFHGTSIGYEGSTSGEVVFNTSMTGYQEILTDPSYCKQIVTLTYPHIGNTG 64
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
N +DEESR + AGL+IR L + SN+R +E+L +YL + I D+DTR +T LR+
Sbjct: 65 TNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLRE 124
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEPFEWVESTKPDWDFNTH- 185
G+ G + T + ++ E+ ++ +VG DL +VS E +EW E +W
Sbjct: 125 KGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTETYEWTEG---EWALGKGF 181
Query: 186 -ERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGD 244
+ + Y V+AYDFG+K NILR LAS GC++ VVP+ A + L L PDGV SNGPGD
Sbjct: 182 VTPDEQPYHVVAYDFGVKTNILRMLASRGCRLTVVPAQTSAEDVLALNPDGVFLSNGPGD 241
Query: 245 PSAVPYAVAIVKELL--GKVPVFGICMGHQLLGQALG 279
P YA+ V++L+ GK P+FGIC+GHQL+ A+G
Sbjct: 242 PEPCTYAIKAVQKLIESGK-PIFGICLGHQLISLAIG 277
>sp|A4SXM1|CARA_POLSQ Carbamoyl-phosphate synthase small chain OS=Polynucleobacter
necessarius subsp. asymbioticus (strain DSM 18221 / CIP
109841 / QLW-P1DMWA-1) GN=carA PE=3 SV=1
Length = 397
Score = 254 bits (650), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 134/288 (46%), Positives = 177/288 (61%), Gaps = 19/288 (6%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A L L DGSI+ S GA G GEVVFNT+LTGYQEI+TDPSY Q V +T PHIGN G
Sbjct: 11 AVLALADGSIFHGFSIGAPGETTGEVVFNTALTGYQEIITDPSYCSQIVTLTYPHIGNVG 70
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
VN D ES + AGLVI+ L SN+R L YL E ++GI +DTR +TR LR
Sbjct: 71 VNAQDAESDRIHAAGLVIKDLPKRVSNFRSEAPLDAYLTEAGVVGIAGIDTRKLTRILRD 130
Query: 128 DGSLIGVLSTEESKSDQEL-----LEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWD 181
G+ G + ++ D E LE+ +++ + G+DL V+ K+P+EW E +WD
Sbjct: 131 KGAQSGAIVAGKAGDDYETLGKKALELVKAFPGMAGLDLAKVVTTKKPYEWREG---EWD 187
Query: 182 ---------FNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLK 232
+ T + + TY+V+AYDFG+K NILR L GC++ VVP+ A+E L ++
Sbjct: 188 LHGPNGTPAYRTLDTSKPTYKVVAYDFGVKRNILRMLTERGCELTVVPAQTSAAEVLAMQ 247
Query: 233 PDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
PDGV SNGPGDP YA+A KE++ VP FGIC+GHQ++G A G
Sbjct: 248 PDGVFLSNGPGDPEPCDYAIAAAKEIIEAGVPTFGICLGHQIMGLAAG 295
>sp|P14845|CARA_SALTY Carbamoyl-phosphate synthase small chain OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=carA PE=3 SV=2
Length = 382
Score = 254 bits (649), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 132/279 (47%), Positives = 177/279 (63%), Gaps = 4/279 (1%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N DEES Q GLVIR L + SN+R E L +YL NI+ I D+DTR +TR
Sbjct: 62 NVGTNKADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVES--TKPDWD 181
LR+ G+ G + +S + LE ++++ + G+DL +V+ E + W + T D
Sbjct: 122 LREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAKEVTTAETYRWTQGSWTLKDGL 181
Query: 182 FNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG 241
+ + V+AYDFG K NILR L GC++ VVP+ A E LK+ PDG+ SNG
Sbjct: 182 PEAKSEDDLPFHVVAYDFGAKRNILRMLVDRGCRLTVVPAQTSAEEVLKMNPDGIFLSNG 241
Query: 242 PGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
PGDP+ YA+ AI K L +P+FGIC+GHQLL A G
Sbjct: 242 PGDPAPCDYAITAIQKFLETDIPLFGICLGHQLLALASG 280
>sp|Q50983|CARA_NEIGO Carbamoyl-phosphate synthase small chain OS=Neisseria gonorrhoeae
GN=carA PE=3 SV=1
Length = 377
Score = 254 bits (649), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 132/277 (47%), Positives = 178/277 (64%), Gaps = 9/277 (3%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVL DGS++ S G G+ GEVVFNTS+TGYQEILTDPSY Q V +T PHIGNTG
Sbjct: 5 ALLVLADGSVFHGTSIGYEGSASGEVVFNTSMTGYQEILTDPSYCKQIVTLTYPHIGNTG 64
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
N +DEESR + AGL+IR L + SN+R +E+L +YL + I D+DTR +T LR+
Sbjct: 65 TNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNETVAIADIDTRRLTMLLRE 124
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEPFEWVESTKPDWDFNTH- 185
G+ G + T + ++ E+ ++ +VG DL +VS E +EW E +W+
Sbjct: 125 KGAQGGAILTGADATVEKAQELIAAFGSMVGKDLAKEVSCTETYEWTEG---EWELGKGF 181
Query: 186 -ERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGD 244
+ + Y V+AYDFG+K NILR LAS GC++ VVP+ A + L L PDGV SNGPGD
Sbjct: 182 VTPDKQPYHVVAYDFGVKTNILRMLASRGCRLTVVPAQTSAEDVLALNPDGVFLSNGPGD 241
Query: 245 PSAVPYAVAIVKELL--GKVPVFGICMGHQLLGQALG 279
P Y + V++L+ GK P+FGIC+GHQL+ A+G
Sbjct: 242 PEPCTYGIEAVQKLMESGK-PIFGICLGHQLISLAIG 277
>sp|Q8RSS4|CARA_HALER Carbamoyl-phosphate synthase small chain OS=Halomonas eurihalina
GN=carA PE=3 SV=2
Length = 381
Score = 254 bits (649), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 181/282 (64%), Gaps = 13/282 (4%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A L LEDGS++ + GA G GEVVFNT++TGYQEILTDPSY+ Q V +T PHIGNTG
Sbjct: 5 AILALEDGSVFHGTAIGADGQTSGEVVFNTAMTGYQEILTDPSYSRQIVTLTYPHIGNTG 64
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
VN +D ES AGLVIR L + S++RC ++L +YLA++N++GI D+ TR +TR LR
Sbjct: 65 VNSEDVESSSIAAAGLVIRDLPLLASSFRCEQSLSDYLAQQNVLGIADMHTRRLTRLLRD 124
Query: 128 DGSLIG-VLSTEESKSDQELLEMSRSWD----IVGIDLISDVSGKEPFEWVESTKPDWDF 182
GS G +L+ +++ + + + G+DL VS EP+EW E +W
Sbjct: 125 KGSQNGAILAGPDAEGEDAEARALEAARAFPGLKGMDLAKVVSCAEPYEWSEG---EWTL 181
Query: 183 NTH----ERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+ + + Y V+AYD+G+K NILR LA+ GC++ VVP+ PA E L + PDG+
Sbjct: 182 GSGYADVSQGDRPYHVVAYDYGMKRNILRMLAARGCRLTVVPAQTPAEEVLAMNPDGIFL 241
Query: 239 SNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
SNGPGDP YA++ ++ L ++PVFGIC+GHQLL A G
Sbjct: 242 SNGPGDPEPCDYAISAIQAFLETEIPVFGICLGHQLLALASG 283
>sp|Q8Z9L8|CARA_SALTI Carbamoyl-phosphate synthase small chain OS=Salmonella typhi
GN=carA PE=3 SV=1
Length = 382
Score = 254 bits (648), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 130/279 (46%), Positives = 176/279 (63%), Gaps = 4/279 (1%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N DEES Q GLVIR L + SN+R E L +YL NI+ I D+DTR +TR
Sbjct: 62 NVGTNEADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVES--TKPDWD 181
LR+ G+ G + +S + LE ++++ + G+DL +V+ E + W + T D
Sbjct: 122 LREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAKEVTTAETYRWTQGSWTLKDGL 181
Query: 182 FNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG 241
+ + V+AYDFG K NILR L GC++ VVP+ A E LK+ PDG+ SNG
Sbjct: 182 PEAKSEDDLPFHVVAYDFGAKRNILRMLVDRGCRLTVVPAQTSAEEVLKMNPDGIFLSNG 241
Query: 242 PGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
P DP+ YA+ +K+ L +PVFGIC+GHQLL A G
Sbjct: 242 PSDPAPCDYAIEAIKKFLQTDIPVFGICLGHQLLALASG 280
>sp|Q6D0C8|CARA_ERWCT Carbamoyl-phosphate synthase small chain OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=carA PE=3 SV=1
Length = 382
Score = 253 bits (647), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 176/282 (62%), Gaps = 10/282 (3%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA G VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSALLVLEDGTQFHGRAIGAEGLAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N +DEES GLVIR L + SN+R E+L YL NI+ I D+DTR +TR
Sbjct: 62 NVGANANDEESPSVQAQGLVIRDLPLIASNYRSEESLSEYLKRNNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFN 183
LR+ G+ G + ++ LE ++++ + G+DL +V+ E + W++ + W
Sbjct: 122 LREKGAQNGCIIAGDAPDAVVALEKAKAFPGLKGMDLAKEVTTAESYSWLQGS---WTLE 178
Query: 184 THERNSKT-----YRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+K Y V+AYD+G+K NILR L GC++ VVP+ PA + LKL PDG+
Sbjct: 179 GELPAAKNESELPYHVVAYDYGVKRNILRMLVDRGCRLTVVPAQTPAEDVLKLNPDGIFL 238
Query: 239 SNGPGDPSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
SNGPGDP YA+ +K L +PVFGIC+GHQLL A G
Sbjct: 239 SNGPGDPEPCDYAIRAIKTFLETGIPVFGICLGHQLLALASG 280
>sp|Q7VP66|CARA_HAEDU Carbamoyl-phosphate synthase small chain OS=Haemophilus ducreyi
(strain 35000HP / ATCC 700724) GN=carA PE=3 SV=1
Length = 389
Score = 253 bits (645), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 135/289 (46%), Positives = 184/289 (63%), Gaps = 20/289 (6%)
Query: 8 ARLVLEDGSIWRAKSFG---ASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
A LVL DGS + KS G S +GEVVFNT++TGYQEILTDPSYA Q V +T PHIG
Sbjct: 5 AILVLADGSTFYGKSIGYQAVSAYSIGEVVFNTAMTGYQEILTDPSYAKQIVTLTYPHIG 64
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
NTG N +D ES Q + +GL+IR L + SN+R +L +YL + NI+ I D+DTR +TR
Sbjct: 65 NTGTNDEDNESNQIYASGLIIRDLPLLHSNFRATSSLSDYLIQHNIIAIADIDTRRLTRI 124
Query: 125 LRQDGSLIGVLST-EESKSDQELLE----MSRSW-DIVGIDLISDVSGKEPFEWVESTKP 178
LR+ GS G + E++S + +E +++S+ + G DL +V+ + +EW E
Sbjct: 125 LRETGSQAGCIYIPNENESLAQAVEKAQDLAKSFGSMAGKDLAKEVTCQHRYEWQEGI-- 182
Query: 179 DWDFNTHE-------RNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKL 231
W T+ + + T+ V+AYDFGIK NILR LA GC+I VVP+ A + L L
Sbjct: 183 -WHLPTNNAGKPFNLQTTPTFHVVAYDFGIKQNILRMLAERGCKITVVPAQTSAEDILAL 241
Query: 232 KPDGVLFSNGPGDPSAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
PDG+ SNGPGDP YA+ +++LL + P+FGIC+GHQLLG A+G
Sbjct: 242 NPDGIFLSNGPGDPEPCTYAIQSIRQLLNTQKPIFGICLGHQLLGLAVG 290
>sp|Q9KPH8|CARA_VIBCH Carbamoyl-phosphate synthase small chain OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=carA PE=3 SV=1
Length = 379
Score = 253 bits (645), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/280 (47%), Positives = 175/280 (62%), Gaps = 10/280 (3%)
Query: 7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
+A LVLEDG+++R S GA G VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIGNT
Sbjct: 4 SALLVLEDGTVFRGVSIGADGISVGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHIGNT 63
Query: 67 GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
G N +DEES GLVIR L + SN+R ++L +YL +NI+GI D+DTR +TR LR
Sbjct: 64 GTNSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILR 123
Query: 127 QDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFNTH 185
+ G+ G + ++ + L ++ + + G+DL VS KE + W + + W
Sbjct: 124 EKGAQNGCIMAGDNLDEALALAKAKEFPGLKGMDLAKVVSTKEAYAWKQGS---WTLEGG 180
Query: 186 ERNSKT-----YRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
+K Y V+AYDFG K NILR L GC++ VVP+ A + L L PDGV SN
Sbjct: 181 LPEAKADSELPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAQTSAEDVLALNPDGVFLSN 240
Query: 241 GPGDPSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
GPGDP YA+ + L K +PVFGIC+GHQ+L A G
Sbjct: 241 GPGDPEPCTYAIEATRVFLEKNIPVFGICLGHQILALASG 280
>sp|Q7MNU1|CARA_VIBVY Carbamoyl-phosphate synthase small chain OS=Vibrio vulnificus
(strain YJ016) GN=carA PE=3 SV=1
Length = 379
Score = 252 bits (644), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/280 (46%), Positives = 176/280 (62%), Gaps = 10/280 (3%)
Query: 7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
+A LVLEDG+++R S GA G VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIGNT
Sbjct: 4 SALLVLEDGTVFRGVSIGADGISVGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHIGNT 63
Query: 67 GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
G +DEES GLVIR L + SN+R ++L +YL +NI+GI D+DTR +TR LR
Sbjct: 64 GTTSEDEESSSIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILR 123
Query: 127 QDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDF--- 182
+ G+ G + + + L ++ + + G+DL +V+ KE ++W + + W
Sbjct: 124 EKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKEAYQWKQGS---WTLEGG 180
Query: 183 --NTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
+ + Y V+AYDFG K NILR L GC++ VVP+ A + L L PDGV SN
Sbjct: 181 LPEAKDDSELPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAETSAEDVLALNPDGVFLSN 240
Query: 241 GPGDPSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
GPGDP+ YA+ K L K +PVFGIC+GHQ+L A G
Sbjct: 241 GPGDPAPCTYAIEATKVFLEKGLPVFGICLGHQILALASG 280
>sp|P58896|CARA_XANCP Carbamoyl-phosphate synthase small chain OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=carA PE=3 SV=1
Length = 375
Score = 252 bits (644), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/273 (46%), Positives = 177/273 (64%), Gaps = 2/273 (0%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVLEDG+++ +S GA+G VGEVVFNT++TGYQE+LTDPSYA Q V +T PHIGNTG
Sbjct: 5 AILVLEDGTVFEGESVGANGLSVGEVVFNTAMTGYQEVLTDPSYARQMVTLTYPHIGNTG 64
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
N D+E++Q + AGL++R + S+WR L +L R ++ I +DTR +TR LR+
Sbjct: 65 FNDQDDEAKQVWAAGLIVRDVPRRPSSWRNQVALPAWLQTRGVVAISGIDTRKLTRLLRE 124
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHER 187
G+ G L E ++ L + + G+DL VS + ++W E + D + N +
Sbjct: 125 KGAQNGALMAGEIDVEKALEAARKFPGLKGMDLAKVVSTETTYQWQEG-QLDLNANAFVQ 183
Query: 188 NSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA 247
++V+AYD+G+K NILR LA GC + VVP+ P +E L ++PDGV SNGPGDP
Sbjct: 184 AELKFKVVAYDYGVKINILRMLAERGCDVTVVPARTPVAEVLAMQPDGVFLSNGPGDPEP 243
Query: 248 VPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
YA++ ++EL+ KVP FGIC+GHQLL A G
Sbjct: 244 CDYAISAIQELIAKKVPTFGICLGHQLLALAAG 276
>sp|P0A6F1|CARA_ECOLI Carbamoyl-phosphate synthase small chain OS=Escherichia coli
(strain K12) GN=carA PE=1 SV=1
Length = 382
Score = 252 bits (643), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 177/282 (62%), Gaps = 10/282 (3%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N DEES Q GLVIR L + SN+R E L +YL NI+ I D+DTR +TR
Sbjct: 62 NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFN 183
LR+ G+ G + ++ LE +R++ + G+DL +V+ E + W + + W
Sbjct: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 178
Query: 184 -----THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+ + + V+AYDFG K NILR L GC++ +VP+ A + LK+ PDG+
Sbjct: 179 GGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
SNGPGDP+ YA+ AI K L +PVFGIC+GHQLL A G
Sbjct: 239 SNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASG 280
>sp|P0A6F2|CARA_ECO57 Carbamoyl-phosphate synthase small chain OS=Escherichia coli
O157:H7 GN=carA PE=3 SV=1
Length = 382
Score = 252 bits (643), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 177/282 (62%), Gaps = 10/282 (3%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA+G+ VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N DEES Q GLVIR L + SN+R E L +YL NI+ I D+DTR +TR
Sbjct: 62 NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFN 183
LR+ G+ G + ++ LE +R++ + G+DL +V+ E + W + + W
Sbjct: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS---WTLT 178
Query: 184 -----THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+ + + V+AYDFG K NILR L GC++ +VP+ A + LK+ PDG+
Sbjct: 179 GGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
Query: 239 SNGPGDPSAVPYAV-AIVKELLGKVPVFGICMGHQLLGQALG 279
SNGPGDP+ YA+ AI K L +PVFGIC+GHQLL A G
Sbjct: 239 SNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASG 280
>sp|Q6F8M7|CARA_ACIAD Carbamoyl-phosphate synthase small chain OS=Acinetobacter sp.
(strain ADP1) GN=carA PE=3 SV=1
Length = 379
Score = 251 bits (641), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 129/279 (46%), Positives = 179/279 (64%), Gaps = 10/279 (3%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A L L DG+I++ S GA+G+ GEVVFNT++TGYQEILTDPSYA Q V +T PHIGNTG
Sbjct: 5 AILALADGTIFKGTSIGATGSTTGEVVFNTAMTGYQEILTDPSYAQQLVTLTYPHIGNTG 64
Query: 68 VNFDDEES---RQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N +D ES + + GL+IR L + SN+R ++L YL + N++ I D+DTR +TR
Sbjct: 65 CNEEDTESGRIHKVWANGLIIRDLPLLHSNFRSEQSLAEYLIQHNVVAIADIDTRKLTRI 124
Query: 125 LRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEPFEWVESTKPDWDFN 183
LR G+ G + E+ +++E L +R++ + G+DL + FEW E + W+
Sbjct: 125 LRDKGAQNGCILAGENITEEEALAKARAFGGLNGLDLAKECCDPNGFEWTEGS---WELG 181
Query: 184 T-HERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGP 242
+ Y V+AYD+G+K NILR LA GC++ VVP+ PA + L L PDGV SNGP
Sbjct: 182 KGFTQPELKYHVVAYDYGVKTNILRMLADRGCKLTVVPAQTPAEQVLALNPDGVFLSNGP 241
Query: 243 GDPSAVPYAVAIVKELL--GKVPVFGICMGHQLLGQALG 279
GDP+A YA+ VK ++ +PVFGIC+GHQ+L A G
Sbjct: 242 GDPAACDYAIEAVKTIVETTNLPVFGICLGHQILALASG 280
>sp|Q66ER8|CARA_YERPS Carbamoyl-phosphate synthase small chain OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=carA
PE=3 SV=1
Length = 391
Score = 251 bits (640), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 175/282 (62%), Gaps = 10/282 (3%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA GT VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSALLVLEDGTQFHGRAIGAEGTAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N DEES GLVIR L + SN+R E L YL NI+ I D+DTR +TR
Sbjct: 62 NVGTNASDEESSAVHAQGLVIRDLPLIASNYRNEEGLSEYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIG-VLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFN 183
LR+ G+ G ++ E S + L + + G+DL +V+ KE ++W++ + W
Sbjct: 122 LREKGAQNGCIIVGELSDAALALEKAKAFPGLKGMDLAKEVTTKEMYQWLQGS---WTLE 178
Query: 184 THERNSKT-----YRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+K + V+AYD+G+K NILR L GC++ VVP+ PA + LKL PDG+
Sbjct: 179 GDLPAAKQPEDLPFHVVAYDYGVKRNILRMLVDRGCRLTVVPAQTPAEDVLKLNPDGIFL 238
Query: 239 SNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
SNGPGDP YA+ +K L +PVFGIC+GHQLL A G
Sbjct: 239 SNGPGDPEPCDYAITAIKRFLETDIPVFGICLGHQLLALASG 280
>sp|Q8ZIL5|CARA_YERPE Carbamoyl-phosphate synthase small chain OS=Yersinia pestis GN=carA
PE=3 SV=1
Length = 391
Score = 251 bits (640), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 175/282 (62%), Gaps = 10/282 (3%)
Query: 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIG 64
+ +A LVLEDG+ + ++ GA GT VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIG
Sbjct: 2 IKSALLVLEDGTQFHGRAIGAEGTAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
Query: 65 NTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRR 124
N G N DEES GLVIR L + SN+R E L YL NI+ I D+DTR +TR
Sbjct: 62 NVGTNASDEESSAVHAQGLVIRDLPLIASNYRNEEGLSEYLKRHNIVAIADIDTRKLTRL 121
Query: 125 LRQDGSLIG-VLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFN 183
LR+ G+ G ++ E S + L + + G+DL +V+ KE ++W++ + W
Sbjct: 122 LREKGAQNGCIIVGELSDAALALEKAKAFPGLKGMDLAKEVTTKEMYQWLQGS---WTLE 178
Query: 184 THERNSKT-----YRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+K + V+AYD+G+K NILR L GC++ VVP+ PA + LKL PDG+
Sbjct: 179 GDLPAAKQPEDLPFHVVAYDYGVKRNILRMLVDRGCRLTVVPAQTPAEDVLKLNPDGIFL 238
Query: 239 SNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
SNGPGDP YA+ +K L +PVFGIC+GHQLL A G
Sbjct: 239 SNGPGDPEPCDYAITAIKRFLETDIPVFGICLGHQLLALASG 280
>sp|Q8DEM1|CARA_VIBVU Carbamoyl-phosphate synthase small chain OS=Vibrio vulnificus
(strain CMCP6) GN=carA PE=3 SV=1
Length = 379
Score = 250 bits (639), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 130/280 (46%), Positives = 175/280 (62%), Gaps = 10/280 (3%)
Query: 7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
+A LVLEDG+++R S GA G VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIGNT
Sbjct: 4 SALLVLEDGTVFRGVSIGADGISVGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHIGNT 63
Query: 67 GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
G +DEES GLVIR L + SN+R ++L +YL +NI+GI D+DTR +TR LR
Sbjct: 64 GTTSEDEESSSIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILR 123
Query: 127 QDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDF--- 182
+ G+ G + + + L ++ + + G+DL +V+ KE ++W + + W
Sbjct: 124 EKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKEAYQWKQGS---WTLEGG 180
Query: 183 --NTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
+ + Y V+AYDFG K NILR L GC++ VVP+ A + L L PDGV SN
Sbjct: 181 LPEAKDDSELPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAETSAEDVLALNPDGVFLSN 240
Query: 241 GPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
GPGDP+ YA+ K L +PVFGIC+GHQ+L A G
Sbjct: 241 GPGDPAPCTYAIEATKVFLENGLPVFGICLGHQILALASG 280
>sp|A5GTM5|CARA_SYNR3 Carbamoyl-phosphate synthase small chain OS=Synechococcus sp.
(strain RCC307) GN=carA PE=3 SV=1
Length = 382
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/272 (44%), Positives = 175/272 (64%), Gaps = 2/272 (0%)
Query: 10 LVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVN 69
LVL DG+++R + FGA GT +GEVVFNT ++GYQE++TDPSY GQ + T P +GNTGVN
Sbjct: 5 LVLADGTVFRGQGFGAKGTAIGEVVFNTGMSGYQEVITDPSYTGQLITFTYPELGNTGVN 64
Query: 70 FDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDG 129
+D E+ + ++ R L+ SNWR + TL +L + ++G+ +DTRA+ R+LR G
Sbjct: 65 QEDLEADTPAVKAVLCRCLAPQPSNWRSSGTLEQWLEQHGVVGLKGIDTRAVVRQLRDGG 124
Query: 130 SLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNS 189
++ G +ST+ + + L ++ + + G +L VS + W T +D ++
Sbjct: 125 AINGAVSTDGTSPAELLKQVLAAPSMAGQNLAERVSTTRAYRWSSPTAAAFDRRLQDQPV 184
Query: 190 KTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP 249
YRV+A DFGIK IL RL+++GC + V+P+ A L LKPDGV SNGPGDPSAV
Sbjct: 185 DRYRVVAIDFGIKRAILERLSAHGCDVEVLPAGSDADAVLALKPDGVFLSNGPGDPSAVG 244
Query: 250 YAVAIVKELLG--KVPVFGICMGHQLLGQALG 279
+A+ K+LL +P+FGIC+GHQ+LG ALG
Sbjct: 245 SGIALAKQLLSDPALPMFGICLGHQILGLALG 276
>sp|Q6LUK6|CARA_PHOPR Carbamoyl-phosphate synthase small chain OS=Photobacterium
profundum GN=carA PE=3 SV=1
Length = 384
Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/277 (45%), Positives = 175/277 (63%), Gaps = 4/277 (1%)
Query: 7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
+A LVLEDG+++R S GA G+ +GEVVFNTS+TGYQEILTDPSY+ Q V +T PHIGNT
Sbjct: 4 SALLVLEDGTVFRGISIGADGSAIGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHIGNT 63
Query: 67 GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
G N +DEES GLVIR L + SN+R +L +YL +NI+GI ++DTR +TR LR
Sbjct: 64 GTNSEDEESNSIHAQGLVIRDLPLLASNFRNERSLSDYLKSQNIVGIAEIDTRKLTRILR 123
Query: 127 QDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVES--TKPDWDFN 183
+ G+ G + ++ + L+ ++ + + G+DL V+ E ++W + T D
Sbjct: 124 EKGAQNGCIMAGDNLDEALALDKAKEFPGLKGMDLAKVVTTAETYQWKQGSWTLLDGLPE 183
Query: 184 THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG 243
+ + Y V+AYDFG K NILR L GC++ VVP+ A + L + PDGV SNGPG
Sbjct: 184 AKDDSELPYHVVAYDFGAKRNILRMLVDRGCRLTVVPAQTSAEDVLAMNPDGVFLSNGPG 243
Query: 244 DPSAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
DP YA+ K L +P+FGIC+GHQ+L A G
Sbjct: 244 DPEPCTYAIEATKTFLDIGLPIFGICLGHQILALASG 280
>sp|Q8XZ85|CARA_RALSO Carbamoyl-phosphate synthase small chain OS=Ralstonia solanacearum
(strain GMI1000) GN=carA PE=3 SV=1
Length = 378
Score = 245 bits (626), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/277 (45%), Positives = 184/277 (66%), Gaps = 10/277 (3%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A L L DG+++R S GA+G +GEVVFNT++TGYQEILTDPSY+ Q V +T PHIGN G
Sbjct: 8 AILALADGTVFRGYSIGAAGHTIGEVVFNTAITGYQEILTDPSYSRQIVTLTYPHIGNVG 67
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
VN +D E+ + AGL+I+ L I SN+R +L +YL ++ I +DTR +TR LR+
Sbjct: 68 VNREDVEATKVHAAGLIIKDLPILASNFRQEHSLSHYLKGEKVVAIAGIDTRKLTRILRE 127
Query: 128 DGSLIG-VLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDFNTH 185
G+ G VL+ E++ Q+ ++++RS+ + G+DL VS +P+EW ++ +W
Sbjct: 128 KGAQNGCVLAGEDNP--QKAIDLARSFPGLSGMDLAKVVSVTQPYEWNQT---EWALGRG 182
Query: 186 E--RNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG 243
++ + V+AYDFG+K+NILR LA GC++ VVP+ A++ L PDGV SNGPG
Sbjct: 183 YGVQDKPQFHVVAYDFGVKYNILRMLAERGCRVTVVPAQTSAADALAYNPDGVFLSNGPG 242
Query: 244 DPSAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
DP YA+A K+ + ++P FGIC+GHQ++G A+G
Sbjct: 243 DPQPCDYAIAATKDFIERRIPTFGICLGHQIMGLAVG 279
>sp|P51201|CARA_PORPU Carbamoyl-phosphate synthase small chain OS=Porphyra purpurea
GN=carA PE=3 SV=1
Length = 384
Score = 245 bits (625), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 178/277 (64%), Gaps = 7/277 (2%)
Query: 8 ARLVLEDGSIWRAKSFGA--SGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGN 65
A LVLEDG+ ++ SF A S +GEVVFNT +TGYQEI+TDPSY Q V T P IGN
Sbjct: 7 AILVLEDGTYYKGWSFQADQSIVTIGEVVFNTGMTGYQEIITDPSYFQQIVTFTYPEIGN 66
Query: 66 TGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRL 125
TG+N +D ES+ + GLV +++ +S+WR E+L YL I I+ +DTR++T+ L
Sbjct: 67 TGINSEDIESQTISIKGLVAKNICKISSSWRQQESLVQYLNRYKIPFIFGIDTRSLTQYL 126
Query: 126 RQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTH 185
R+ G++ G +S + ++S + G+DLI +V+ ++W E + P W
Sbjct: 127 RRSGTMNGCISNKNLNHAYLQRKISEVPHMTGLDLIPNVTTNIMYDWDEKSLPSWYLADR 186
Query: 186 ERNSKTY---RVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGP 242
R K Y +VI DFG+K NILRRLA+ GCQI V+P++ P + L KPDG+L SNGP
Sbjct: 187 NR-EKIYSQLKVIVIDFGVKLNILRRLATLGCQITVMPASTPTQDILSCKPDGILLSNGP 245
Query: 243 GDPSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQAL 278
GDPSAV Y + VKELL + +P+FGICMGHQ+L AL
Sbjct: 246 GDPSAVNYGIKTVKELLNQNIPIFGICMGHQILNLAL 282
>sp|Q8EHS6|CARA_SHEON Carbamoyl-phosphate synthase small chain OS=Shewanella oneidensis
(strain MR-1) GN=carA PE=3 SV=1
Length = 386
Score = 244 bits (624), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 126/281 (44%), Positives = 175/281 (62%), Gaps = 12/281 (4%)
Query: 7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNT 66
+A LVLEDG+++ + GA G VGEVVFNTS+TGYQEILTDPSY+ Q V +T PHIGNT
Sbjct: 8 SALLVLEDGTVFTGTAIGADGLSVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNT 67
Query: 67 GVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLR 126
G N +D ES GL+IR L + S++R + L +YL N++GI D+DTR +TR LR
Sbjct: 68 GTNNEDVESNGVHACGLIIRDLPLIASSFRNQQNLSDYLKANNVVGIADIDTRKLTRILR 127
Query: 127 QDGSLIGVLSTEESKSDQELLEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWDF--- 182
+ G+ G + + + L ++++ + G+DL +V+ + + W K W
Sbjct: 128 EKGAQAGCIMAGADLDEVKALAAAKAFPGLKGMDLAKEVTTDKAYPW---RKGSWRLVGG 184
Query: 183 ---NTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFS 239
+T K Y+V+AYD+G+K NILR L GC + VVP+ PASE L + PDGV S
Sbjct: 185 LPADTPAEALK-YKVVAYDYGVKQNILRMLVDRGCDVTVVPAKTPASEVLAMNPDGVFLS 243
Query: 240 NGPGDPSAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
NGPGDP YA+ ++++L P+FGIC+GHQLL A G
Sbjct: 244 NGPGDPEPCDYAIEAIQQILKTDTPIFGICLGHQLLALASG 284
>sp|P57245|CARA_BUCAI Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS) GN=carA PE=3
SV=1
Length = 387
Score = 243 bits (620), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/276 (43%), Positives = 171/276 (61%), Gaps = 4/276 (1%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVLEDG+ + ++ GA G VGEVVFNTS+TGYQEI+TDPSY+ Q V +T+PHIGN G
Sbjct: 9 AVLVLEDGTKFHGRAIGAKGITVGEVVFNTSITGYQEIITDPSYSHQIVTLTHPHIGNVG 68
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
N +DEES + ++ GL+IR LS+ SN+R ++ +YL E NI+ I D+DTR +TR LR
Sbjct: 69 TNSNDEESSKIYIKGLIIRDLSLTASNYRNKKSFSSYLKENNIIAISDIDTRKLTRILRT 128
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEPFEWVES--TKPDWDFNT 184
GS G + ++ ++ ++++ + +DL VS K + W + T +F +
Sbjct: 129 KGSQNGCIIEDKKQNYSIAYNKAKNFISLQDLDLAKKVSTKSIYNWDQGSFTFKKNNFFS 188
Query: 185 HERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGD 244
+ + V+ YDFG+K NILR L GC + VVP+ L L PDG+ SNGPGD
Sbjct: 189 INKQKFLFHVVVYDFGVKRNILRMLVDRGCYLTVVPAITDPKTVLNLSPDGIFLSNGPGD 248
Query: 245 PSAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
P YA+ ++ L +P+FGIC+GHQLL A G
Sbjct: 249 PRPCDYAIHAIQYFLKTNIPIFGICLGHQLLALASG 284
>sp|P58895|CARA_XANAC Carbamoyl-phosphate synthase small chain OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=carA PE=3 SV=1
Length = 391
Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/292 (44%), Positives = 174/292 (59%), Gaps = 23/292 (7%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVLEDG+++ +S GA+G VGEVVFNT++TGYQE+LTDPSYA Q V +T PHIGNTG
Sbjct: 5 AILVLEDGTVFEGESVGANGLSVGEVVFNTAMTGYQEVLTDPSYARQMVTLTYPHIGNTG 64
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
D+E+R+ + AGL++R + SNWR L +L R ++ I +DTR +TR LRQ
Sbjct: 65 FTDQDDEARKIWAAGLIVRDVPRRPSNWRSQVALPEWLQARGVVAISGIDTRKLTRLLRQ 124
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNT--- 184
G+ G L + ++ L + + G+DL VS + + W E + D N+
Sbjct: 125 KGAQNGALMAGDIDVEKALEAARKFPGLKGMDLAKVVSTESTYNWKEGS---LDLNSDSF 181
Query: 185 ------------HERNSK----TYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASET 228
H ++V+AYD+G+K NILR LA GC + VVP+ P +E
Sbjct: 182 LGLGALNIGKSAHASAGSGEELAFKVVAYDYGVKLNILRMLAERGCDVTVVPARTPVAEV 241
Query: 229 LKLKPDGVLFSNGPGDPSAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279
L L+PDGV SNGPGDP YA+ +KEL+ KVP FGIC+GHQLL A G
Sbjct: 242 LALQPDGVFLSNGPGDPEPCDYAIDAIKELIAQKVPTFGICLGHQLLALAAG 293
>sp|B1XUM3|CARA_POLNS Carbamoyl-phosphate synthase small chain OS=Polynucleobacter
necessarius subsp. necessarius (strain STIR1) GN=carA
PE=3 SV=1
Length = 398
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 176/288 (61%), Gaps = 19/288 (6%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A L L DGSI+ S GA G GEVVFNT+LTGYQEI+TDPSY+ Q V +T PHIGN G
Sbjct: 11 AVLALADGSIFPGYSIGAPGETTGEVVFNTALTGYQEIITDPSYSRQIVTLTYPHIGNVG 70
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
VN D ES + AGLV++ L S++R L +YL + ++GI +DTR +TR LR
Sbjct: 71 VNAQDAESDRIHAAGLVVKDLPKRVSSFRSEGALDDYLTKAGVLGIAGIDTRKLTRILRD 130
Query: 128 DGSLIGVLSTEESKSDQEL-----LEMSRSWD-IVGIDLISDVSGKEPFEWVESTKPDWD 181
G+ G + + E LE+++++ + G+DL V+ ++ +EW E+ +W+
Sbjct: 131 KGAQSGAIVAGKVGDSYETLVSKALELAKAFPGMSGLDLAKVVTTQKVYEWREA---EWN 187
Query: 182 ---------FNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLK 232
+ T + +V+AYDFG+K NILR L GCQ+ VVP+ A+E L +
Sbjct: 188 LHGADGKPAYGTLDTGKPINKVVAYDFGVKRNILRMLTERGCQLTVVPAQTTAAEVLAMN 247
Query: 233 PDGVLFSNGPGDPSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
PDGV FSNGPGDP YA+A KE++ K VP FGIC+GHQ++G A G
Sbjct: 248 PDGVFFSNGPGDPGPCDYAIAAAKEIIEKGVPTFGICLGHQIMGLAAG 295
>sp|Q8CXH8|CARA_OCEIH Carbamoyl-phosphate synthase small chain OS=Oceanobacillus
iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
HTE831) GN=carA PE=3 SV=1
Length = 366
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/271 (43%), Positives = 169/271 (62%), Gaps = 17/271 (6%)
Query: 9 RLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGV 68
+L+LEDG+++ +FG+ GE+VFNT +TGYQE++TDPSY GQFV +T P IGN G+
Sbjct: 5 KLILEDGTVFNGTAFGSDAESSGEIVFNTGMTGYQEVITDPSYCGQFVTLTYPLIGNYGI 64
Query: 69 NFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQD 128
N DD E+ F+ GLV++ S SN+R ETL +L NI GI ++DTR +TR +R+
Sbjct: 65 NRDDFETVTPFIHGLVVKEYSEFPSNFRNEETLDEFLQAHNIPGIANIDTRKLTRIIRKH 124
Query: 129 GSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERN 188
G++ V+ +E K++Q ++E R ++ P + V+ T + R
Sbjct: 125 GTMRAVM-VDEQKNEQHVIEQLRLAEM-------------PRDQVKRTSTIKPYVVPGRG 170
Query: 189 SKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV 248
RV+ DFG KH ILR L C I VVP + A L+LKPDG++ +NGPGDP V
Sbjct: 171 ---LRVVMVDFGAKHGILRELTRRDCHITVVPHNYSAEAILRLKPDGIMLTNGPGDPKDV 227
Query: 249 PYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
P A+ ++K+LLG++P+FGIC+GHQLL A G
Sbjct: 228 PEAIEMIKQLLGQIPIFGICLGHQLLALACG 258
>sp|Q7UGJ6|CARA_RHOBA Carbamoyl-phosphate synthase small chain OS=Rhodopirellula baltica
(strain SH1) GN=carA PE=3 SV=1
Length = 389
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/280 (45%), Positives = 169/280 (60%), Gaps = 9/280 (3%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A+L LEDG+++ S GA G GEVVFNTS+TGYQEILTDPSY GQ V MT P +GN G
Sbjct: 9 AKLALEDGTVYTGTSLGAEGETTGEVVFNTSMTGYQEILTDPSYRGQLVTMTYPEMGNYG 68
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
+N D E+R LAG +IR+ S SN+R +L +YL + ++GI +DTRA+ RR+R
Sbjct: 69 INSIDLENRGTSLAGFIIRNESRMHSNYRSEGSLSDYLNSQGVVGIAGIDTRALVRRIRS 128
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHER 187
+G++ GVLST + + + S +VG DL+ +V + +W DW
Sbjct: 129 EGAMRGVLSTTDLDDASLVAKAKASPGLVGRDLVQEVMPTQLEKWTNELD-DWTIREIRE 187
Query: 188 NSKTY--------RVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFS 239
+K V+ DFG+K NI R L S G ++ +VP A + LK+ PDGV S
Sbjct: 188 AAKDASIGDDSRPHVVCMDFGMKWNIPRHLRSRGNRVTIVPGNASADDILKMDPDGVFLS 247
Query: 240 NGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279
NGPGDP + YA + ELLG+VPVFGIC+GHQLL A G
Sbjct: 248 NGPGDPEPLTYAHKAIGELLGQVPVFGICLGHQLLSVACG 287
>sp|Q1XDT6|CARA_PORYE Carbamoyl-phosphate synthase small chain OS=Porphyra yezoensis
GN=carA PE=3 SV=1
Length = 384
Score = 238 bits (608), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/279 (45%), Positives = 177/279 (63%), Gaps = 11/279 (3%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQV--GEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGN 65
A LVLEDG+ ++ SF ++ GEVVFNT +TGYQEI+TDPSY Q V T P IGN
Sbjct: 7 AILVLEDGAYYKGWSFQQDKQEITIGEVVFNTGMTGYQEIITDPSYFHQIVAFTYPEIGN 66
Query: 66 TGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRL 125
TG+N D ES + GL+ +++ +S+WR ++L YL+ NI I+ +DTR++T+ L
Sbjct: 67 TGINNQDIESHSISIKGLIAKNICKISSSWREQQSLVKYLSSNNIPFIFGIDTRSLTQYL 126
Query: 126 RQDGSLIGVLSTE---ESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDF 182
RQ G++ G +ST+ S Q++ E+ + G+DLI V+ + + W E + P+W
Sbjct: 127 RQFGTMNGCISTDNLNHSYLKQKICEIP---SMQGLDLIPHVTTRNVYPWDEKSFPNWYL 183
Query: 183 NTHERNSKT--YRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240
+ R + +VI DFG+K NILRRLA+ GCQI VVP+ P + L +PDG+L SN
Sbjct: 184 TDNIRVHRVIQLKVIVIDFGVKLNILRRLATLGCQITVVPAHTPLKDILAYQPDGILLSN 243
Query: 241 GPGDPSAVPYAVAIVKELLG-KVPVFGICMGHQLLGQAL 278
GPGDPSAV Y + V LL VP+FGICMGHQ+L AL
Sbjct: 244 GPGDPSAVHYGIQTVTNLLDYNVPIFGICMGHQILNLAL 282
>sp|Q9JP87|CARA_RUBGI Carbamoyl-phosphate synthase small chain OS=Rubrivivax gelatinosus
(strain NBRC 100245 / IL144) GN=carA PE=3 SV=1
Length = 384
Score = 238 bits (606), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 166/282 (58%), Gaps = 13/282 (4%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A L L DG+ + S GA G VGEVVFNT+LTGYQEILTDPSY Q V +T PHIGN G
Sbjct: 8 ALLALADGTTFLGTSIGAPGRTVGEVVFNTALTGYQEILTDPSYCRQIVTLTYPHIGNVG 67
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
VN +D E+ + AGLVI+ L + SN+R A L YL + I +DTR +TR LR
Sbjct: 68 VNEEDVEAAKVHAAGLVIKDLPLRVSNFRAAMPLSQYLEREGTVAIAGIDTRRLTRVLRT 127
Query: 128 DGSLIGVLST-------EESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDW 180
G+ G + + E++ + + + G+DL VS P+EW E++ W
Sbjct: 128 TGAQNGCIVSFAPGTVVGEAEIAAAVAAAKAAPSMAGLDLAQVVSADAPYEWTETS---W 184
Query: 181 DFNTHERN--SKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238
+ V+AYDFG+K NILR LA GC++ VVP+ PA+E KLKPDGV
Sbjct: 185 QLGRGHGTLADAEFHVVAYDFGVKRNILRLLADRGCRVTVVPARTPAAEVFKLKPDGVFL 244
Query: 239 SNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279
SNGPGDP YA+A +E++ VP FGIC+GHQ++ A G
Sbjct: 245 SNGPGDPEPCDYAIAAAREIIDAGVPTFGICLGHQIMALASG 286
>sp|Q8K9Z6|CARA_BUCAP Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=carA PE=3 SV=1
Length = 385
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/279 (44%), Positives = 172/279 (61%), Gaps = 10/279 (3%)
Query: 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTG 67
A LVLEDG+ + +S GA GT VGEVVFNTS+TGYQEI+TDPSY+ Q V +T+PHIGN G
Sbjct: 9 AVLVLEDGTRFHGRSIGAKGTTVGEVVFNTSITGYQEIITDPSYSHQIVTLTHPHIGNIG 68
Query: 68 VNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQ 127
N +DEES + + GL+IR +S +SN+R ++ +YL E NI+ I D+DTR +TR LR
Sbjct: 69 TNCNDEESSKIHIRGLIIRDMSPISSNYRSEKSFSSYLKENNIVAISDIDTRKLTRILRT 128
Query: 128 DGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEPFEWVESTKPDWDFN--- 183
GS G + ++ ++ + ++ + + G+DL VS K + W K + N
Sbjct: 129 KGSQNGCIIEDKKENYSVAYQKAKKFLSLQGLDLAKKVSTKFIYNW---DKGSFFINKSK 185
Query: 184 --THERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG 241
++ + ++ YDFG+K NILR L GC + VVP+ L L PDG+ SNG
Sbjct: 186 SKLEKKKKFLFHIVVYDFGVKRNILRMLVDRGCYLTVVPAKTDPKIALNLNPDGIFLSNG 245
Query: 242 PGDPSAVPYAVAIVKELLGK-VPVFGICMGHQLLGQALG 279
PGDP YA+ ++ L K +P+FGIC+GHQLL A G
Sbjct: 246 PGDPRPCDYAIHAIQCFLKKNIPIFGICLGHQLLALASG 284
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,725,099
Number of Sequences: 539616
Number of extensions: 4618089
Number of successful extensions: 13595
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 608
Number of HSP's that attempted gapping in prelim test: 12430
Number of HSP's gapped (non-prelim): 1005
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)