Query 039151
Match_columns 279
No_of_seqs 322 out of 2093
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:48:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0505 CarA Carbamoylphosphat 100.0 8E-105 2E-109 744.1 28.2 266 5-279 1-268 (368)
2 PLN02771 carbamoyl-phosphate s 100.0 2E-100 4E-105 735.2 29.0 278 2-279 51-328 (415)
3 PRK12564 carbamoyl phosphate s 100.0 9.8E-97 2E-101 702.8 28.5 263 5-279 2-266 (360)
4 TIGR01368 CPSaseIIsmall carbam 100.0 1.2E-96 3E-101 701.5 28.0 260 8-279 1-261 (358)
5 CHL00197 carA carbamoyl-phosph 100.0 2.1E-96 5E-101 704.0 29.8 273 6-279 5-281 (382)
6 PRK12838 carbamoyl phosphate s 100.0 1.3E-96 3E-101 700.4 26.7 255 6-279 1-255 (354)
7 KOG0370 Multifunctional pyrimi 100.0 1.1E-81 2.4E-86 634.2 23.3 248 7-279 2-258 (1435)
8 PF00988 CPSase_sm_chain: Carb 100.0 4E-73 8.6E-78 468.8 11.0 131 6-136 1-131 (131)
9 PRK05637 anthranilate synthase 99.8 8.4E-21 1.8E-25 169.1 10.6 88 192-279 2-91 (208)
10 PRK08007 para-aminobenzoate sy 99.8 1.2E-20 2.6E-25 165.1 10.0 87 193-279 1-90 (187)
11 COG0512 PabA Anthranilate/para 99.8 2.2E-20 4.7E-25 163.5 10.3 88 192-279 2-92 (191)
12 PRK06774 para-aminobenzoate sy 99.8 4.6E-20 9.9E-25 161.3 9.8 87 193-279 1-90 (191)
13 TIGR00566 trpG_papA glutamine 99.8 1.1E-19 2.3E-24 159.1 10.4 87 193-279 1-90 (188)
14 PRK07649 para-aminobenzoate/an 99.8 1.1E-19 2.4E-24 160.2 9.9 87 193-279 1-90 (195)
15 PRK05670 anthranilate synthase 99.8 1.5E-19 3.2E-24 157.9 10.4 87 193-279 1-90 (189)
16 PLN02335 anthranilate synthase 99.8 1.8E-19 3.9E-24 161.9 10.3 88 192-279 19-109 (222)
17 cd01744 GATase1_CPSase Small c 99.8 2.9E-19 6.3E-24 154.7 10.7 86 194-279 1-87 (178)
18 CHL00101 trpG anthranilate syn 99.8 4.9E-19 1.1E-23 155.0 10.0 87 193-279 1-90 (190)
19 PRK08857 para-aminobenzoate sy 99.8 1.4E-18 3E-23 152.4 10.1 87 193-279 1-90 (193)
20 PF00117 GATase: Glutamine ami 99.7 5.5E-18 1.2E-22 146.9 9.6 85 195-279 1-90 (192)
21 PRK06895 putative anthranilate 99.7 1.9E-17 4.1E-22 144.8 10.8 86 192-279 2-90 (190)
22 TIGR00888 guaA_Nterm GMP synth 99.7 3.4E-17 7.3E-22 142.6 10.8 85 194-279 1-88 (188)
23 PRK07765 para-aminobenzoate sy 99.7 3.2E-17 6.9E-22 146.5 10.7 88 192-279 1-94 (214)
24 cd01743 GATase1_Anthranilate_S 99.7 1.8E-16 4E-21 137.4 10.6 85 194-279 1-89 (184)
25 PRK09522 bifunctional glutamin 99.7 1.3E-16 2.8E-21 159.6 10.4 88 192-279 2-95 (531)
26 PRK13566 anthranilate synthase 99.7 2.2E-16 4.7E-21 162.8 11.7 91 188-279 523-616 (720)
27 COG0518 GuaA GMP synthase - Gl 99.7 2.8E-16 6E-21 139.3 10.7 88 192-279 2-97 (198)
28 PLN02347 GMP synthetase 99.7 3E-16 6.5E-21 157.1 12.0 87 193-279 12-104 (536)
29 cd01742 GATase1_GMP_Synthase T 99.7 2.6E-16 5.7E-21 135.5 9.8 85 194-279 1-88 (181)
30 TIGR01815 TrpE-clade3 anthrani 99.7 5.3E-16 1.1E-20 159.8 11.6 90 189-279 514-606 (717)
31 PRK14607 bifunctional glutamin 99.6 3.7E-16 8E-21 156.6 9.7 87 193-279 1-91 (534)
32 KOG0026 Anthranilate synthase, 99.6 5.1E-16 1.1E-20 133.2 8.9 88 192-279 19-110 (223)
33 PRK00758 GMP synthase subunit 99.6 2.8E-15 6E-20 130.1 9.8 82 193-279 1-85 (184)
34 PRK00074 guaA GMP synthase; Re 99.6 3.9E-15 8.5E-20 148.5 10.4 87 192-279 4-93 (511)
35 PLN02889 oxo-acid-lyase/anthra 99.6 3.9E-15 8.5E-20 155.9 10.3 87 192-279 82-180 (918)
36 TIGR01823 PabB-fungal aminodeo 99.6 1.3E-14 2.9E-19 150.2 10.7 88 191-279 5-104 (742)
37 PRK06490 glutamine amidotransf 99.5 9.1E-14 2E-18 126.3 11.1 87 191-279 7-104 (239)
38 PRK13170 hisH imidazole glycer 99.5 1.1E-13 2.4E-18 121.9 8.7 81 192-278 1-87 (196)
39 cd01745 GATase1_2 Subgroup of 99.4 2.8E-13 6E-18 118.6 9.0 79 201-279 20-118 (189)
40 PRK07053 glutamine amidotransf 99.4 5.6E-13 1.2E-17 120.8 11.1 88 192-279 3-101 (234)
41 PRK13152 hisH imidazole glycer 99.4 3.8E-13 8.2E-18 118.7 9.3 78 194-277 2-89 (201)
42 cd01748 GATase1_IGP_Synthase T 99.4 9.6E-13 2.1E-17 115.5 7.7 78 194-277 1-87 (198)
43 COG0118 HisH Glutamine amidotr 99.4 1.3E-12 2.9E-17 115.4 8.5 79 192-276 2-89 (204)
44 PRK05665 amidotransferase; Pro 99.4 3.5E-12 7.5E-17 116.1 10.6 86 192-279 3-109 (240)
45 CHL00188 hisH imidazole glycer 99.4 2.4E-12 5.3E-17 114.9 9.0 81 192-278 2-91 (210)
46 PRK13181 hisH imidazole glycer 99.3 2.5E-12 5.5E-17 113.1 8.3 78 194-277 2-88 (199)
47 cd01741 GATase1_1 Subgroup of 99.3 8.3E-12 1.8E-16 108.2 10.2 87 193-279 1-99 (188)
48 PRK13141 hisH imidazole glycer 99.3 4.7E-12 1E-16 111.8 8.6 79 193-277 1-88 (205)
49 PRK09065 glutamine amidotransf 99.3 4.3E-12 9.4E-17 115.0 8.5 74 204-279 26-106 (237)
50 PRK13143 hisH imidazole glycer 99.3 8.2E-12 1.8E-16 110.2 9.9 80 192-277 1-87 (200)
51 PRK08250 glutamine amidotransf 99.3 1.2E-11 2.6E-16 112.1 11.0 87 192-279 1-102 (235)
52 PRK13142 hisH imidazole glycer 99.3 6.4E-12 1.4E-16 111.0 8.4 77 194-277 2-86 (192)
53 PRK07567 glutamine amidotransf 99.3 1.7E-11 3.7E-16 111.6 9.8 84 194-279 4-111 (242)
54 PRK14004 hisH imidazole glycer 99.3 1.6E-11 3.5E-16 109.7 8.7 79 194-278 2-89 (210)
55 TIGR01855 IMP_synth_hisH imida 99.3 1.6E-11 3.5E-16 108.0 8.4 78 194-277 1-87 (196)
56 PRK11366 puuD gamma-glutamyl-g 99.2 2.4E-11 5.1E-16 111.4 9.2 77 202-279 28-125 (254)
57 PRK13525 glutamine amidotransf 99.2 2.8E-11 6E-16 106.2 9.2 83 192-279 2-90 (189)
58 KOG1622 GMP synthase [Nucleoti 99.2 7.4E-12 1.6E-16 121.2 4.8 85 193-279 18-106 (552)
59 TIGR00337 PyrG CTP synthase. C 99.2 2.2E-11 4.7E-16 121.4 7.5 89 190-279 288-390 (525)
60 PRK13146 hisH imidazole glycer 99.2 3.2E-11 6.9E-16 107.4 7.8 80 192-277 2-93 (209)
61 PRK13527 glutamine amidotransf 99.2 4.8E-11 1.1E-15 105.1 8.8 74 203-279 17-95 (200)
62 KOG1224 Para-aminobenzoate (PA 99.2 8E-11 1.7E-15 116.1 9.5 88 191-279 14-113 (767)
63 PF07722 Peptidase_C26: Peptid 99.2 3.4E-11 7.3E-16 107.9 6.2 78 202-279 26-124 (217)
64 PLN02617 imidazole glycerol ph 99.1 1.6E-10 3.5E-15 116.1 9.9 81 191-277 6-95 (538)
65 COG2071 Predicted glutamine am 99.1 2.3E-10 5E-15 103.7 8.8 77 202-279 28-125 (243)
66 TIGR03800 PLP_synth_Pdx2 pyrid 99.1 2.6E-10 5.6E-15 99.8 8.6 80 194-278 2-87 (184)
67 cd01746 GATase1_CTP_Synthase T 99.1 3.1E-10 6.7E-15 103.1 8.3 75 203-279 17-102 (235)
68 TIGR01737 FGAM_synth_I phospho 99.1 1.3E-09 2.8E-14 98.2 10.8 82 192-277 1-94 (227)
69 cd01747 GATase1_Glutamyl_Hydro 99.0 1E-09 2.2E-14 101.8 9.4 78 202-279 22-110 (273)
70 PLN02832 glutamine amidotransf 98.9 3.5E-09 7.5E-14 97.0 8.6 81 192-277 2-88 (248)
71 cd01749 GATase1_PB Glutamine A 98.9 2.9E-09 6.3E-14 92.8 7.2 70 205-279 13-87 (183)
72 PRK01175 phosphoribosylformylg 98.9 6.2E-09 1.3E-13 96.1 9.6 87 191-277 3-105 (261)
73 KOG3179 Predicted glutamine sy 98.9 5.7E-09 1.2E-13 92.5 7.2 79 199-279 23-111 (245)
74 PRK13526 glutamine amidotransf 98.8 9.4E-09 2E-13 90.0 8.3 80 192-276 3-87 (179)
75 cd01740 GATase1_FGAR_AT Type 1 98.8 1.1E-08 2.4E-13 92.8 9.0 83 195-277 2-98 (238)
76 cd01750 GATase1_CobQ Type 1 gl 98.8 1.3E-08 2.9E-13 89.4 8.0 80 194-278 1-89 (194)
77 PRK03619 phosphoribosylformylg 98.8 3.2E-08 7E-13 88.8 10.1 82 192-277 1-95 (219)
78 PRK05380 pyrG CTP synthetase; 98.8 1.6E-08 3.6E-13 101.1 8.6 88 190-279 287-390 (533)
79 PRK05368 homoserine O-succinyl 98.7 1.2E-07 2.7E-12 89.2 10.2 90 190-279 34-153 (302)
80 COG0047 PurL Phosphoribosylfor 98.6 1.3E-07 2.8E-12 85.3 8.4 83 191-277 2-97 (231)
81 PLN02327 CTP synthase 98.6 6.9E-08 1.5E-12 97.0 5.7 88 190-279 296-409 (557)
82 PRK06186 hypothetical protein; 98.5 2.6E-07 5.7E-12 83.8 8.3 74 202-277 17-98 (229)
83 cd03130 GATase1_CobB Type 1 gl 98.3 2.4E-06 5.2E-11 75.5 7.8 71 205-278 16-92 (198)
84 cd01653 GATase1 Type 1 glutami 98.2 1.1E-05 2.4E-10 60.2 8.7 72 203-274 15-92 (115)
85 COG0504 PyrG CTP synthase (UTP 98.2 6.4E-06 1.4E-10 81.4 8.3 84 192-277 289-388 (533)
86 cd03128 GAT_1 Type 1 glutamine 98.1 1.2E-05 2.6E-10 57.3 7.4 72 203-274 15-92 (92)
87 PRK06278 cobyrinic acid a,c-di 98.1 7.1E-06 1.5E-10 81.7 7.2 78 192-277 1-81 (476)
88 PRK00784 cobyric acid synthase 98.0 2.2E-05 4.7E-10 78.4 8.2 83 191-278 251-342 (488)
89 PF13507 GATase_5: CobB/CobQ-l 98.0 2.5E-05 5.3E-10 72.2 7.6 85 192-276 2-105 (259)
90 KOG0623 Glutamine amidotransfe 97.9 4.6E-05 1E-09 72.7 8.4 78 193-276 3-89 (541)
91 cd03169 GATase1_PfpI_1 Type 1 97.8 0.00013 2.8E-09 62.8 9.5 47 231-277 75-124 (180)
92 PRK11780 isoprenoid biosynthes 97.8 0.0001 2.2E-09 66.3 8.9 54 225-278 78-145 (217)
93 cd03133 GATase1_ES1 Type 1 glu 97.7 0.00017 3.6E-09 64.9 8.7 54 225-278 75-142 (213)
94 cd03146 GAT1_Peptidase_E Type 97.7 0.00012 2.5E-09 65.3 7.1 81 192-276 32-129 (212)
95 cd03134 GATase1_PfpI_like A ty 97.6 0.00039 8.4E-09 58.6 9.5 74 204-277 17-110 (165)
96 cd03147 GATase1_Ydr533c_like T 97.6 0.00032 6.8E-09 63.7 8.6 53 225-277 87-143 (231)
97 PLN03206 phosphoribosylformylg 97.6 0.00035 7.5E-09 77.0 10.2 87 189-277 1035-1142(1307)
98 PRK01077 cobyrinic acid a,c-di 97.5 0.00055 1.2E-08 67.7 10.4 85 191-278 245-339 (451)
99 cd03132 GATase1_catalase Type 97.5 0.00058 1.3E-08 56.3 8.9 85 193-277 3-111 (142)
100 cd03131 GATase1_HTS Type 1 glu 97.5 0.0001 2.2E-09 64.4 4.4 54 226-279 56-116 (175)
101 PRK05297 phosphoribosylformylg 97.5 0.00053 1.2E-08 75.8 10.0 86 190-277 1034-1140(1290)
102 TIGR01857 FGAM-synthase phosph 97.5 0.00064 1.4E-08 74.5 10.3 88 190-277 976-1090(1239)
103 TIGR01735 FGAM_synt phosphorib 97.4 0.00056 1.2E-08 75.6 9.6 87 190-276 1054-1159(1310)
104 TIGR01382 PfpI intracellular p 97.4 0.00024 5.3E-09 59.8 5.4 53 224-277 52-108 (166)
105 KOG2387 CTP synthase (UTP-ammo 97.4 0.00022 4.8E-09 70.0 5.5 45 232-277 363-408 (585)
106 cd03141 GATase1_Hsp31_like Typ 97.2 0.0016 3.5E-08 58.3 8.0 53 225-277 83-139 (221)
107 cd03148 GATase1_EcHsp31_like T 97.2 0.0016 3.5E-08 59.1 8.0 47 231-277 95-145 (232)
108 TIGR00379 cobB cobyrinic acid 97.2 0.00068 1.5E-08 67.1 6.0 84 191-278 244-338 (449)
109 PRK11574 oxidative-stress-resi 97.2 0.0056 1.2E-07 53.2 11.1 72 205-276 21-114 (196)
110 PF01965 DJ-1_PfpI: DJ-1/PfpI 97.1 0.00024 5.3E-09 59.3 2.2 56 222-277 27-87 (147)
111 TIGR00313 cobQ cobyric acid sy 97.1 0.00032 6.9E-09 70.0 2.7 82 191-278 247-336 (475)
112 cd03144 GATase1_ScBLP_like Typ 97.1 0.0003 6.5E-09 57.5 2.0 42 231-272 43-88 (114)
113 cd03135 GATase1_DJ-1 Type 1 gl 97.0 0.0015 3.2E-08 54.5 5.7 54 224-277 52-109 (163)
114 PRK04155 chaperone protein Hch 97.0 0.0026 5.6E-08 59.7 7.7 47 231-277 146-196 (287)
115 PHA03366 FGAM-synthase; Provis 97.0 0.0045 9.6E-08 68.7 10.6 87 189-276 1026-1132(1304)
116 cd03140 GATase1_PfpI_3 Type 1 96.9 0.0021 4.5E-08 54.9 6.0 54 224-277 52-107 (170)
117 PF07685 GATase_3: CobB/CobQ-l 96.9 0.00082 1.8E-08 57.2 3.5 48 231-278 6-59 (158)
118 COG0311 PDX2 Predicted glutami 96.9 0.0033 7.2E-08 55.4 7.1 80 192-276 1-87 (194)
119 TIGR01739 tegu_FGAM_synt herpe 96.9 0.0054 1.2E-07 67.6 10.0 86 190-276 928-1033(1202)
120 PF01174 SNO: SNO glutamine am 96.7 0.0015 3.3E-08 57.6 3.8 66 206-276 12-83 (188)
121 PRK13896 cobyrinic acid a,c-di 96.6 0.0045 9.7E-08 61.3 6.5 80 192-278 234-325 (433)
122 TIGR01383 not_thiJ DJ-1 family 96.5 0.0046 1E-07 52.6 5.3 54 224-277 55-112 (179)
123 COG0693 ThiJ Putative intracel 96.4 0.0037 8.1E-08 53.9 4.4 47 231-277 65-115 (188)
124 COG1492 CobQ Cobyric acid synt 96.4 0.0084 1.8E-07 59.9 6.8 83 190-278 250-342 (486)
125 cd03137 GATase1_AraC_1 AraC tr 96.3 0.01 2.2E-07 50.8 6.5 47 231-277 63-112 (187)
126 PRK11249 katE hydroperoxidase 96.1 0.018 3.9E-07 60.5 8.1 87 191-277 597-707 (752)
127 cd03138 GATase1_AraC_2 AraC tr 96.1 0.014 3.1E-07 50.4 6.2 47 231-277 68-120 (195)
128 COG3442 Predicted glutamine am 95.9 0.0073 1.6E-07 54.7 3.4 69 207-277 28-103 (250)
129 KOG2764 Putative transcription 95.5 0.053 1.1E-06 49.5 7.4 48 230-277 65-116 (247)
130 PRK05282 (alpha)-aspartyl dipe 95.4 0.046 9.9E-07 49.9 6.8 83 192-277 32-129 (233)
131 cd03139 GATase1_PfpI_2 Type 1 95.0 0.049 1.1E-06 46.3 5.6 46 232-277 62-110 (183)
132 KOG1559 Gamma-glutamyl hydrola 95.0 0.062 1.3E-06 49.6 6.4 73 202-276 79-162 (340)
133 cd03129 GAT1_Peptidase_E_like 94.7 0.16 3.5E-06 44.8 8.1 84 191-276 29-129 (210)
134 PF13278 DUF4066: Putative ami 94.4 0.06 1.3E-06 45.3 4.6 47 231-277 60-109 (166)
135 PRK09393 ftrA transcriptional 93.9 0.16 3.4E-06 47.6 6.7 47 231-277 74-122 (322)
136 cd03136 GATase1_AraC_ArgR_like 93.8 0.15 3.2E-06 43.7 5.8 46 232-277 64-111 (185)
137 TIGR01001 metA homoserine O-su 91.3 0.27 5.8E-06 46.6 4.3 51 224-274 91-148 (300)
138 PF04204 HTS: Homoserine O-suc 90.8 0.14 3.1E-06 48.4 2.0 89 190-278 33-152 (298)
139 KOG3210 Imidazoleglycerol-phos 89.4 0.71 1.5E-05 40.6 5.0 71 204-277 28-107 (226)
140 COG1797 CobB Cobyrinic acid a, 88.7 2.1 4.5E-05 42.7 8.2 83 192-278 246-340 (451)
141 cd03145 GAT1_cyanophycinase Ty 88.6 2.4 5.2E-05 37.9 8.1 84 191-276 29-132 (217)
142 PF10281 Ish1: Putative stress 86.4 0.46 9.9E-06 31.0 1.6 34 93-127 2-36 (38)
143 PF03575 Peptidase_S51: Peptid 85.8 1.1 2.4E-05 37.7 4.0 69 204-274 4-82 (154)
144 TIGR02069 cyanophycinase cyano 81.9 7.1 0.00015 35.8 7.9 84 191-276 28-131 (250)
145 COG4090 Uncharacterized protei 81.3 2.7 5.8E-05 35.5 4.4 37 232-269 85-124 (154)
146 PF09825 BPL_N: Biotin-protein 80.6 2 4.4E-05 41.8 4.1 44 231-274 48-95 (367)
147 COG4977 Transcriptional regula 80.4 4.4 9.4E-05 39.0 6.2 46 232-277 76-124 (328)
148 PRK03708 ppnK inorganic polyph 79.8 6.9 0.00015 36.5 7.2 73 192-271 1-90 (277)
149 PF09897 DUF2124: Uncharacteri 76.8 1 2.2E-05 38.5 0.6 38 231-269 79-119 (147)
150 KOG1907 Phosphoribosylformylgl 76.3 9.3 0.0002 41.5 7.5 82 191-276 1058-1162(1320)
151 TIGR01839 PHA_synth_II poly(R) 75.8 2.6 5.7E-05 43.2 3.4 73 196-276 230-304 (560)
152 COG1897 MetA Homoserine trans- 75.6 2.9 6.4E-05 39.0 3.3 50 224-274 91-148 (307)
153 cd02067 B12-binding B12 bindin 74.3 8.4 0.00018 30.5 5.4 38 204-241 18-59 (119)
154 PRK01911 ppnK inorganic polyph 73.7 15 0.00032 34.7 7.6 62 203-271 19-98 (292)
155 PRK02231 ppnK inorganic polyph 72.9 11 0.00023 35.3 6.5 62 203-271 3-76 (272)
156 COG0771 MurD UDP-N-acetylmuram 72.3 24 0.00052 35.4 9.1 31 191-221 7-38 (448)
157 PRK14077 pnk inorganic polypho 72.2 9.8 0.00021 35.7 6.1 72 193-271 12-98 (287)
158 PRK03372 ppnK inorganic polyph 71.3 11 0.00023 35.8 6.2 72 193-271 7-106 (306)
159 COG4607 CeuA ABC-type enteroch 71.2 6.8 0.00015 37.3 4.7 48 190-242 57-127 (320)
160 PRK04539 ppnK inorganic polyph 70.3 14 0.0003 34.9 6.7 72 193-271 7-102 (296)
161 PF02056 Glyco_hydro_4: Family 70.2 5.4 0.00012 35.2 3.6 65 203-277 112-176 (183)
162 COG1214 Inactive homolog of me 68.9 6.7 0.00014 35.3 4.1 38 232-269 58-97 (220)
163 PRK02155 ppnK NAD(+)/NADH kina 68.8 13 0.00028 34.9 6.1 62 203-271 24-97 (291)
164 PF03698 UPF0180: Uncharacteri 68.8 12 0.00026 28.8 4.8 44 193-243 3-46 (80)
165 PRK03378 ppnK inorganic polyph 67.7 14 0.00029 34.9 6.0 62 203-271 24-97 (292)
166 PRK02261 methylaspartate mutas 67.5 34 0.00074 28.4 7.8 51 192-242 4-64 (137)
167 PF02310 B12-binding: B12 bind 65.8 11 0.00024 29.5 4.4 38 203-240 18-59 (121)
168 PRK02649 ppnK inorganic polyph 65.1 18 0.00038 34.4 6.2 62 203-271 20-102 (305)
169 COG2185 Sbm Methylmalonyl-CoA 64.6 25 0.00053 30.0 6.4 69 190-258 11-90 (143)
170 PF06283 ThuA: Trehalose utili 64.5 30 0.00065 30.4 7.3 62 205-269 24-89 (217)
171 PRK11625 Rho-binding antitermi 61.7 23 0.0005 27.4 5.2 57 7-68 25-81 (84)
172 smart00852 MoCF_biosynth Proba 60.1 33 0.00071 27.8 6.3 38 204-243 22-68 (135)
173 PRK01372 ddl D-alanine--D-alan 60.1 65 0.0014 29.4 9.0 37 203-239 26-63 (304)
174 cd02071 MM_CoA_mut_B12_BD meth 59.6 41 0.00089 27.0 6.7 38 205-242 19-60 (122)
175 PRK00421 murC UDP-N-acetylmura 59.3 55 0.0012 32.2 8.9 51 192-242 8-76 (461)
176 cd06292 PBP1_LacI_like_10 Liga 58.6 58 0.0012 28.5 8.1 63 203-267 19-89 (273)
177 PF03060 NMO: Nitronate monoox 58.0 43 0.00092 31.8 7.5 84 192-275 114-207 (330)
178 PRK01231 ppnK inorganic polyph 58.0 30 0.00065 32.6 6.4 62 203-271 23-96 (295)
179 TIGR01838 PHA_synth_I poly(R)- 57.9 15 0.00031 37.7 4.6 69 196-276 203-278 (532)
180 cd06295 PBP1_CelR Ligand bindi 57.6 52 0.0011 28.9 7.6 57 203-266 30-92 (275)
181 PRK03094 hypothetical protein; 57.0 22 0.00048 27.4 4.3 37 203-244 11-47 (80)
182 PF00455 DeoRC: DeoR C termina 56.8 29 0.00062 29.4 5.6 75 193-268 21-101 (161)
183 PRK02645 ppnK inorganic polyph 56.6 31 0.00067 32.6 6.3 62 204-271 23-92 (305)
184 PF13407 Peripla_BP_4: Peripla 56.2 30 0.00065 30.2 5.8 60 203-267 18-86 (257)
185 cd06309 PBP1_YtfQ_like Peripla 56.1 54 0.0012 28.8 7.5 61 202-267 18-86 (273)
186 cd03332 LMO_FMN L-Lactate 2-mo 56.1 66 0.0014 31.6 8.6 82 197-279 236-330 (383)
187 KOG0538 Glycolate oxidase [Ene 55.6 32 0.0007 33.1 6.1 86 194-279 203-300 (363)
188 PRK14075 pnk inorganic polypho 55.4 51 0.0011 30.3 7.4 57 203-271 16-72 (256)
189 COG2403 Predicted GTPase [Gene 55.1 33 0.00071 34.0 6.2 47 94-140 47-93 (449)
190 cd06299 PBP1_LacI_like_13 Liga 54.9 50 0.0011 28.7 7.0 40 202-241 18-64 (265)
191 COG1058 CinA Predicted nucleot 53.8 50 0.0011 30.7 7.0 38 204-243 25-71 (255)
192 PRK03767 NAD(P)H:quinone oxido 53.2 66 0.0014 28.0 7.4 29 193-221 3-39 (200)
193 PLN02493 probable peroxisomal 53.1 87 0.0019 30.6 8.8 82 197-279 207-301 (367)
194 cd01425 RPS2 Ribosomal protein 52.1 90 0.0019 27.3 8.1 32 230-268 125-157 (193)
195 PRK04885 ppnK inorganic polyph 52.0 47 0.001 30.9 6.5 50 204-271 19-71 (265)
196 PRK10499 PTS system N,N'-diace 51.9 86 0.0019 24.9 7.3 69 193-267 5-79 (106)
197 cd01575 PBP1_GntR Ligand-bindi 51.8 85 0.0018 27.1 8.0 38 203-240 19-63 (268)
198 cd06305 PBP1_methylthioribose_ 51.7 84 0.0018 27.4 8.0 60 203-267 19-86 (273)
199 cd06287 PBP1_LacI_like_8 Ligan 51.6 76 0.0017 28.3 7.8 39 202-240 26-64 (269)
200 PLN02274 inosine-5'-monophosph 50.5 61 0.0013 33.0 7.6 89 191-279 260-373 (505)
201 PF09075 STb_secrete: Heat-sta 50.3 4.3 9.2E-05 27.3 -0.4 17 263-279 31-47 (48)
202 PRK01368 murD UDP-N-acetylmura 50.3 87 0.0019 31.1 8.6 50 192-242 7-73 (454)
203 cd02130 PA_ScAPY_like PA_ScAPY 50.1 60 0.0013 25.9 6.2 71 13-88 4-77 (122)
204 PF02844 GARS_N: Phosphoribosy 49.9 19 0.00042 28.7 3.2 70 192-266 1-91 (100)
205 PF07801 DUF1647: Protein of u 49.6 41 0.00088 28.6 5.3 48 192-239 90-142 (142)
206 PRK01390 murD UDP-N-acetylmura 49.3 88 0.0019 30.7 8.4 51 192-242 10-75 (460)
207 cd06274 PBP1_FruR Ligand bindi 49.1 70 0.0015 27.8 7.0 40 202-241 18-64 (264)
208 cd01538 PBP1_ABC_xylose_bindin 49.0 98 0.0021 27.7 8.1 60 203-267 19-86 (288)
209 cd06282 PBP1_GntR_like_2 Ligan 48.8 84 0.0018 27.1 7.5 60 202-267 18-85 (266)
210 PF06490 FleQ: Flagellar regul 48.4 31 0.00067 27.4 4.2 72 193-266 1-74 (109)
211 cd05298 GH4_GlvA_pagL_like Gly 48.2 24 0.00053 35.1 4.3 48 225-276 127-174 (437)
212 PRK11104 hemG protoporphyrinog 47.8 1.3E+02 0.0028 25.8 8.3 68 200-270 12-87 (177)
213 cd06298 PBP1_CcpA_like Ligand- 47.7 97 0.0021 26.8 7.7 38 203-240 19-63 (268)
214 TIGR01819 F420_cofD LPPG:FO 2- 47.6 15 0.00032 35.0 2.5 35 232-268 182-219 (297)
215 cd06317 PBP1_ABC_sugar_binding 47.6 91 0.002 27.1 7.5 61 202-267 19-87 (275)
216 cd06273 PBP1_GntR_like_1 This 47.4 1E+02 0.0023 26.7 7.9 38 203-240 19-63 (268)
217 PF00072 Response_reg: Respons 47.4 47 0.001 24.7 5.0 74 194-268 1-78 (112)
218 cd01541 PBP1_AraR Ligand-bindi 47.2 1E+02 0.0022 27.0 7.8 40 202-241 18-64 (273)
219 TIGR00640 acid_CoA_mut_C methy 46.6 81 0.0018 26.0 6.6 51 192-242 3-63 (132)
220 TIGR03725 bact_YeaZ universal 46.4 20 0.00043 31.5 3.0 44 232-276 54-99 (202)
221 COG3243 PhaC Poly(3-hydroxyalk 46.0 19 0.00042 35.9 3.1 79 193-278 119-199 (445)
222 TIGR00147 lipid kinase, YegS/R 45.8 1E+02 0.0022 28.2 7.8 58 203-266 22-87 (293)
223 cd00886 MogA_MoaB MogA_MoaB fa 45.7 76 0.0017 26.5 6.4 40 204-243 24-72 (152)
224 cd00885 cinA Competence-damage 45.6 99 0.0021 26.6 7.2 40 204-243 23-69 (170)
225 cd02072 Glm_B12_BD B12 binding 45.3 58 0.0013 27.1 5.5 61 205-265 19-85 (128)
226 cd01540 PBP1_arabinose_binding 45.2 1E+02 0.0022 27.2 7.5 60 202-267 18-85 (289)
227 PLN02929 NADH kinase 44.6 64 0.0014 30.7 6.3 60 204-271 38-97 (301)
228 cd06323 PBP1_ribose_binding Pe 44.6 1.3E+02 0.0027 26.0 7.9 60 203-267 19-86 (268)
229 cd02065 B12-binding_like B12 b 44.0 62 0.0013 25.2 5.3 39 204-242 18-60 (125)
230 cd06279 PBP1_LacI_like_3 Ligan 43.7 1E+02 0.0022 27.3 7.4 40 202-241 23-65 (283)
231 cd06283 PBP1_RegR_EndR_KdgR_li 43.7 90 0.0019 27.0 6.8 38 203-240 19-63 (267)
232 COG2070 Dioxygenases related t 43.4 1.3E+02 0.0029 28.8 8.4 88 191-279 104-206 (336)
233 PRK01710 murD UDP-N-acetylmura 43.2 1.5E+02 0.0032 29.2 9.0 31 191-221 14-45 (458)
234 cd06267 PBP1_LacI_sugar_bindin 43.2 96 0.0021 26.4 6.9 36 204-239 20-62 (264)
235 cd02070 corrinoid_protein_B12- 43.1 52 0.0011 28.8 5.2 37 204-240 101-141 (201)
236 PRK01215 competence damage-ind 42.8 1.8E+02 0.0039 26.9 8.9 40 204-243 27-73 (264)
237 TIGR01755 flav_wrbA NAD(P)H:qu 42.5 1.1E+02 0.0023 26.8 7.1 29 193-221 2-38 (197)
238 PRK06703 flavodoxin; Provision 42.5 93 0.002 25.5 6.4 64 205-270 22-91 (151)
239 cd06319 PBP1_ABC_sugar_binding 42.4 1.4E+02 0.003 26.1 7.9 39 202-240 18-63 (277)
240 cd06320 PBP1_allose_binding Pe 42.4 1.4E+02 0.0029 26.2 7.9 60 203-267 19-88 (275)
241 KOG4015 Fatty acid-binding pro 42.3 17 0.00038 30.5 1.9 26 97-126 13-38 (133)
242 TIGR02634 xylF D-xylose ABC tr 42.1 1.4E+02 0.0029 27.2 8.0 38 202-239 17-61 (302)
243 cd06277 PBP1_LacI_like_1 Ligan 41.9 94 0.002 27.1 6.7 38 203-240 22-66 (268)
244 TIGR02667 moaB_proteo molybden 41.6 1.9E+02 0.0042 24.5 8.4 44 204-247 26-79 (163)
245 cd06322 PBP1_ABC_sugar_binding 41.6 1.5E+02 0.0032 25.7 7.9 38 202-239 18-62 (267)
246 cd06301 PBP1_rhizopine_binding 41.2 1.3E+02 0.0028 26.2 7.5 61 202-267 18-87 (272)
247 cd06318 PBP1_ABC_sugar_binding 40.8 1.5E+02 0.0032 26.0 7.8 39 202-240 18-63 (282)
248 PRK03673 hypothetical protein; 40.3 1.9E+02 0.0042 28.5 9.1 40 204-243 25-71 (396)
249 PF09822 ABC_transp_aux: ABC-t 40.0 95 0.002 28.2 6.6 55 203-263 172-227 (271)
250 PRK13606 LPPG:FO 2-phospho-L-l 40.0 25 0.00054 33.5 2.8 35 232-268 185-222 (303)
251 PLN02979 glycolate oxidase 39.3 1.9E+02 0.0042 28.3 8.8 81 198-279 207-300 (366)
252 PRK04020 rps2P 30S ribosomal p 39.3 1.6E+02 0.0036 26.4 7.8 69 193-268 69-144 (204)
253 cd06314 PBP1_tmGBP Periplasmic 39.1 1.7E+02 0.0036 25.7 7.9 60 203-267 18-85 (271)
254 cd06313 PBP1_ABC_sugar_binding 39.1 1.7E+02 0.0036 25.9 8.0 59 202-265 18-84 (272)
255 PRK04690 murD UDP-N-acetylmura 39.1 1.2E+02 0.0026 30.1 7.7 30 192-221 9-39 (468)
256 cd04743 NPD_PKS 2-Nitropropane 39.0 2.2E+02 0.0048 27.3 9.1 83 191-274 82-181 (320)
257 TIGR03151 enACPred_II putative 39.0 1.7E+02 0.0038 27.5 8.3 83 191-274 87-177 (307)
258 TIGR00200 cinA_nterm competenc 39.0 2.2E+02 0.0048 28.1 9.4 38 204-243 24-70 (413)
259 PRK15029 arginine decarboxylas 38.7 1.3E+02 0.0027 32.4 8.0 76 192-267 1-91 (755)
260 PRK03670 competence damage-ind 38.5 1.1E+02 0.0023 28.3 6.6 40 204-243 24-71 (252)
261 cd06281 PBP1_LacI_like_5 Ligan 38.4 1.6E+02 0.0034 25.8 7.6 40 202-241 18-64 (269)
262 TIGR00177 molyb_syn molybdenum 37.9 1.3E+02 0.0029 24.8 6.6 41 203-243 30-77 (144)
263 cd00758 MoCF_BD MoCF_BD: molyb 37.7 1.5E+02 0.0032 24.0 6.8 40 204-243 23-69 (133)
264 COG0391 Uncharacterized conser 37.7 34 0.00074 32.9 3.3 36 231-268 188-228 (323)
265 PRK05568 flavodoxin; Provision 37.6 2.1E+02 0.0046 22.8 8.2 32 205-238 22-54 (142)
266 COG0521 MoaB Molybdopterin bio 37.4 58 0.0012 28.5 4.4 57 205-263 32-98 (169)
267 PRK15408 autoinducer 2-binding 37.4 1.4E+02 0.003 28.2 7.5 60 203-267 43-111 (336)
268 PRK00865 glutamate racemase; P 37.4 2.2E+02 0.0047 26.0 8.6 76 192-273 6-103 (261)
269 PRK02006 murD UDP-N-acetylmura 37.1 1.8E+02 0.0039 28.9 8.6 30 192-221 8-38 (498)
270 COG1609 PurR Transcriptional r 37.0 1.7E+02 0.0037 27.6 8.0 39 202-240 77-122 (333)
271 PRK04308 murD UDP-N-acetylmura 36.8 2.1E+02 0.0046 27.9 8.9 30 192-221 6-36 (445)
272 PRK14569 D-alanyl-alanine synt 36.5 2.6E+02 0.0057 25.8 9.0 48 191-238 3-62 (296)
273 cd06168 LSm9 The eukaryotic Sm 36.4 65 0.0014 24.2 4.1 42 3-50 8-49 (75)
274 PRK14076 pnk inorganic polypho 35.9 76 0.0016 32.6 5.8 75 191-271 290-382 (569)
275 cd05797 Ribosomal_L10 Ribosoma 35.8 70 0.0015 26.8 4.7 77 192-273 20-114 (157)
276 PRK10355 xylF D-xylose transpo 35.8 3.4E+02 0.0073 25.2 9.8 61 202-267 44-112 (330)
277 cd07186 CofD_like LPPG:FO 2-ph 35.6 34 0.00074 32.6 3.0 35 232-268 183-222 (303)
278 cd01139 TroA_f Periplasmic bin 35.5 84 0.0018 29.2 5.6 45 223-269 82-126 (342)
279 cd06300 PBP1_ABC_sugar_binding 35.5 1.9E+02 0.0042 25.1 7.7 60 203-267 19-91 (272)
280 cd06284 PBP1_LacI_like_6 Ligan 35.3 1.5E+02 0.0033 25.5 7.0 37 203-239 19-62 (267)
281 cd01545 PBP1_SalR Ligand-bindi 34.6 1.6E+02 0.0034 25.5 7.0 39 203-241 19-65 (270)
282 cd06451 AGAT_like Alanine-glyo 34.5 1.9E+02 0.0042 26.7 7.9 54 192-246 75-137 (356)
283 cd06316 PBP1_ABC_sugar_binding 34.3 2.2E+02 0.0047 25.4 8.0 60 203-267 19-87 (294)
284 TIGR01082 murC UDP-N-acetylmur 34.2 1.7E+02 0.0036 28.7 7.7 11 232-242 58-68 (448)
285 cd00636 TroA-like Helical back 34.2 1.2E+02 0.0026 23.1 5.6 20 222-241 51-70 (148)
286 PF03358 FMN_red: NADPH-depend 34.1 65 0.0014 26.1 4.1 75 192-270 1-115 (152)
287 PRK00549 competence damage-ind 33.9 2.4E+02 0.0051 27.9 8.7 38 204-243 24-70 (414)
288 cd01542 PBP1_TreR_like Ligand- 33.6 2.6E+02 0.0055 24.0 8.1 38 203-240 19-63 (259)
289 PF00994 MoCF_biosynth: Probab 33.5 1E+02 0.0022 25.2 5.2 38 204-243 21-67 (144)
290 COG2242 CobL Precorrin-6B meth 33.4 1.2E+02 0.0026 27.0 5.8 52 191-244 58-113 (187)
291 PF01976 DUF116: Protein of un 33.3 1.3E+02 0.0029 25.7 6.0 66 198-269 69-138 (158)
292 cd06293 PBP1_LacI_like_11 Liga 33.3 2.4E+02 0.0052 24.5 8.0 38 203-240 19-63 (269)
293 cd06285 PBP1_LacI_like_7 Ligan 33.3 1.5E+02 0.0032 25.8 6.6 38 202-239 18-62 (265)
294 COG3340 PepE Peptidase E [Amin 33.0 65 0.0014 29.4 4.2 80 191-271 32-128 (224)
295 cd06321 PBP1_ABC_sugar_binding 32.9 2E+02 0.0043 25.0 7.4 61 202-267 18-88 (271)
296 PRK03369 murD UDP-N-acetylmura 32.8 2.3E+02 0.0049 28.3 8.5 29 192-220 13-42 (488)
297 PF06218 NPR2: Nitrogen permea 32.7 9.2 0.0002 38.1 -1.4 38 93-135 331-368 (428)
298 cd05564 PTS_IIB_chitobiose_lic 32.6 2E+02 0.0042 22.2 6.4 67 204-277 18-94 (96)
299 PRK09271 flavodoxin; Provision 32.5 2.3E+02 0.0049 23.7 7.3 35 205-239 21-58 (160)
300 PRK06849 hypothetical protein; 32.3 2.4E+02 0.0053 26.9 8.3 32 191-222 4-37 (389)
301 cd01422 MGS Methylglyoxal synt 32.2 1.6E+02 0.0034 23.6 6.0 61 205-265 36-105 (115)
302 PRK05569 flavodoxin; Provision 32.0 1.5E+02 0.0033 23.8 6.0 32 205-238 22-54 (141)
303 cd06302 PBP1_LsrB_Quorum_Sensi 31.9 2.4E+02 0.0051 25.4 7.9 37 203-239 19-63 (298)
304 PRK11197 lldD L-lactate dehydr 31.8 2.7E+02 0.0059 27.3 8.6 81 198-279 229-322 (381)
305 TIGR01501 MthylAspMutase methy 31.5 97 0.0021 25.9 4.7 40 202-241 18-61 (134)
306 cd06308 PBP1_sensor_kinase_lik 31.2 2.6E+02 0.0057 24.3 7.9 60 203-267 19-87 (270)
307 PRK10703 DNA-binding transcrip 30.9 2.5E+02 0.0055 25.6 8.0 39 203-241 79-124 (341)
308 cd06297 PBP1_LacI_like_12 Liga 30.9 2.5E+02 0.0054 24.6 7.7 39 202-240 18-63 (269)
309 cd06324 PBP1_ABC_sugar_binding 30.8 2.5E+02 0.0053 25.4 7.8 59 202-266 19-87 (305)
310 PF10087 DUF2325: Uncharacteri 30.7 2.4E+02 0.0053 21.5 6.8 68 194-265 2-79 (97)
311 PRK09701 D-allose transporter 30.7 2.6E+02 0.0056 25.5 8.0 60 203-267 44-113 (311)
312 cd06306 PBP1_TorT-like TorT-li 30.6 2E+02 0.0043 25.3 7.0 60 202-267 18-87 (268)
313 PRK04148 hypothetical protein; 30.5 1.2E+02 0.0026 25.4 5.1 33 191-223 17-49 (134)
314 cd01539 PBP1_GGBP Periplasmic 30.5 2.6E+02 0.0056 25.3 7.9 60 203-267 19-88 (303)
315 PRK05939 hypothetical protein; 30.5 3.3E+02 0.0073 26.4 9.0 65 193-259 88-157 (397)
316 PLN02935 Bifunctional NADH kin 30.4 1E+02 0.0022 31.6 5.5 74 192-271 195-296 (508)
317 TIGR01306 GMP_reduct_2 guanosi 30.4 2.8E+02 0.0061 26.6 8.3 88 192-279 109-220 (321)
318 PRK06702 O-acetylhomoserine am 30.2 2.3E+02 0.005 28.1 8.0 66 193-259 102-173 (432)
319 cd03143 A4_beta-galactosidase_ 30.2 2.1E+02 0.0045 23.4 6.6 57 202-266 28-86 (154)
320 cd06290 PBP1_LacI_like_9 Ligan 30.2 2.8E+02 0.006 23.9 7.8 37 204-240 20-63 (265)
321 COG4635 HemG Flavodoxin [Energ 30.2 98 0.0021 27.2 4.6 61 205-270 21-88 (175)
322 cd04822 PA_M28_1_3 PA_M28_1_3: 29.8 1.5E+02 0.0033 25.3 5.7 25 12-36 3-27 (151)
323 TIGR03723 bact_gcp putative gl 29.8 63 0.0014 30.5 3.7 38 232-269 70-109 (314)
324 PRK08227 autoinducer 2 aldolas 29.7 94 0.002 29.0 4.8 64 206-272 164-228 (264)
325 PRK14573 bifunctional D-alanyl 29.7 2.2E+02 0.0047 30.4 8.1 49 193-241 6-72 (809)
326 TIGR01012 Sa_S2_E_A ribosomal 29.5 67 0.0015 28.7 3.7 31 231-268 107-138 (196)
327 COG4126 Hydantoin racemase [Am 29.4 1E+02 0.0023 28.2 4.9 41 232-279 69-109 (230)
328 PF02601 Exonuc_VII_L: Exonucl 29.4 2.9E+02 0.0062 25.8 8.1 75 191-265 14-111 (319)
329 PRK10014 DNA-binding transcrip 29.3 2.4E+02 0.0051 25.7 7.5 39 203-241 84-129 (342)
330 cd01536 PBP1_ABC_sugar_binding 29.0 3.3E+02 0.0072 23.1 8.0 37 204-240 20-63 (267)
331 cd03142 GATase1_ThuA Type 1 gl 29.0 3.6E+02 0.0078 24.2 8.3 67 200-269 23-96 (215)
332 cd06315 PBP1_ABC_sugar_binding 28.9 2.1E+02 0.0045 25.4 6.8 39 202-240 19-64 (280)
333 cd06278 PBP1_LacI_like_2 Ligan 28.8 3.1E+02 0.0066 23.5 7.8 38 203-240 19-62 (266)
334 PRK00099 rplJ 50S ribosomal pr 28.7 1.2E+02 0.0025 26.0 4.9 77 193-274 22-116 (172)
335 TIGR00853 pts-lac PTS system, 28.0 2.6E+02 0.0055 21.6 6.4 69 192-267 4-81 (95)
336 cd06310 PBP1_ABC_sugar_binding 27.9 3.4E+02 0.0075 23.5 8.0 60 203-267 19-88 (273)
337 PRK01185 ppnK inorganic polyph 27.9 2.1E+02 0.0046 26.6 6.9 60 203-271 19-83 (271)
338 cd06271 PBP1_AglR_RafR_like Li 27.9 2.8E+02 0.006 23.8 7.3 38 203-240 23-67 (268)
339 PRK11914 diacylglycerol kinase 27.8 1.1E+02 0.0025 28.2 5.1 43 204-246 30-78 (306)
340 TIGR00259 thylakoid_BtpA membr 27.8 2.5E+02 0.0055 26.1 7.3 69 196-265 116-204 (257)
341 cd06296 PBP1_CatR_like Ligand- 27.6 3.1E+02 0.0067 23.7 7.6 37 203-239 19-62 (270)
342 PLN02727 NAD kinase 27.6 1.2E+02 0.0026 33.4 5.7 73 192-271 679-777 (986)
343 cd01574 PBP1_LacI Ligand-bindi 27.5 3.3E+02 0.0072 23.4 7.8 39 202-240 18-64 (264)
344 cd02809 alpha_hydroxyacid_oxid 27.4 2.7E+02 0.0058 25.9 7.5 63 203-266 161-232 (299)
345 PLN02256 arogenate dehydrogena 27.3 2.1E+02 0.0045 26.9 6.8 54 189-242 34-102 (304)
346 COG0796 MurI Glutamate racemas 27.2 4.5E+02 0.0098 24.7 8.8 73 191-268 5-98 (269)
347 PRK00726 murG undecaprenyldiph 26.9 1.8E+02 0.0038 26.9 6.2 28 232-269 252-280 (357)
348 PRK00561 ppnK inorganic polyph 26.9 65 0.0014 29.9 3.2 35 231-271 32-67 (259)
349 PTZ00254 40S ribosomal protein 26.8 98 0.0021 28.7 4.3 31 231-268 117-148 (249)
350 PRK14987 gluconate operon tran 26.7 3.3E+02 0.0072 24.7 8.0 38 203-240 83-127 (331)
351 PRK10653 D-ribose transporter 26.5 3.8E+02 0.0082 23.9 8.2 37 203-239 46-89 (295)
352 PF12438 DUF3679: Protein of u 26.5 40 0.00087 24.2 1.4 17 38-59 26-42 (56)
353 PF08532 Glyco_hydro_42M: Beta 26.4 1.6E+02 0.0034 25.8 5.5 49 203-259 33-81 (207)
354 TIGR01849 PHB_depoly_PhaZ poly 26.3 1.3E+02 0.0028 29.8 5.4 61 202-275 119-183 (406)
355 cd04736 MDH_FMN Mandelate dehy 26.3 3.3E+02 0.0072 26.6 8.1 81 198-279 220-311 (361)
356 PF07073 ROF: Modulator of Rho 26.1 44 0.00096 25.6 1.6 54 7-66 19-78 (80)
357 PTZ00314 inosine-5'-monophosph 26.1 2.7E+02 0.0058 28.2 7.7 88 192-279 254-366 (495)
358 PF10757 YbaJ: Biofilm formati 26.1 13 0.00027 30.7 -1.4 15 59-73 83-97 (122)
359 COG0061 nadF NAD kinase [Coenz 26.0 1.7E+02 0.0037 27.2 5.9 64 202-271 18-89 (281)
360 PRK03501 ppnK inorganic polyph 25.9 1.4E+02 0.003 27.7 5.2 51 205-271 22-75 (264)
361 PRK05299 rpsB 30S ribosomal pr 25.8 1.1E+02 0.0023 28.5 4.4 30 232-268 157-187 (258)
362 CHL00067 rps2 ribosomal protei 25.7 1E+02 0.0022 28.0 4.2 31 231-268 160-191 (230)
363 PF13527 Acetyltransf_9: Acety 25.7 41 0.0009 26.0 1.5 45 7-54 42-87 (127)
364 PF00532 Peripla_BP_1: Peripla 25.7 2.2E+02 0.0048 25.9 6.5 37 203-239 21-63 (279)
365 cd06270 PBP1_GalS_like Ligand 25.5 2.5E+02 0.0054 24.4 6.6 38 203-240 19-63 (268)
366 COG3155 ElbB Uncharacterized p 25.2 1.1E+02 0.0024 27.0 4.1 49 231-279 84-146 (217)
367 PRK00683 murD UDP-N-acetylmura 25.2 4.9E+02 0.011 25.1 9.2 52 192-243 4-70 (418)
368 PRK08734 lipid A biosynthesis 25.1 69 0.0015 29.9 3.1 85 44-139 103-193 (305)
369 PRK10411 DNA-binding transcrip 25.1 1.3E+02 0.0028 27.3 4.8 72 193-266 95-172 (240)
370 cd06312 PBP1_ABC_sugar_binding 24.9 3.8E+02 0.0082 23.4 7.7 62 202-268 19-89 (271)
371 cd06289 PBP1_MalI_like Ligand- 24.9 4.1E+02 0.0088 22.8 7.8 38 203-240 19-63 (268)
372 PRK06395 phosphoribosylamine-- 24.7 3.4E+02 0.0073 26.8 8.0 30 192-221 3-33 (435)
373 PRK14571 D-alanyl-alanine synt 24.6 4.6E+02 0.01 23.9 8.5 37 203-239 22-60 (299)
374 cd03109 DTBS Dethiobiotin synt 24.2 3.6E+02 0.0079 21.7 6.9 49 202-258 16-67 (134)
375 PF00853 Runt: Runt domain; I 24.1 30 0.00065 28.9 0.4 23 90-115 27-49 (135)
376 PRK05294 carB carbamoyl phosph 24.1 4E+02 0.0087 29.6 9.1 32 190-221 553-596 (1066)
377 PRK09417 mogA molybdenum cofac 24.0 1.8E+02 0.0038 25.8 5.3 59 204-264 27-98 (193)
378 PF08815 Nuc_rec_co-act: Nucle 24.0 18 0.00039 25.4 -0.8 20 101-121 13-32 (51)
379 PF00670 AdoHcyase_NAD: S-aden 23.7 1.3E+02 0.0029 26.0 4.3 32 191-222 23-55 (162)
380 PRK06852 aldolase; Validated 23.6 1.2E+02 0.0026 29.0 4.4 65 206-272 194-267 (304)
381 TIGR01481 ccpA catabolite cont 23.5 4.2E+02 0.009 23.9 7.9 38 203-240 79-123 (329)
382 KOG2708 Predicted metalloprote 23.5 92 0.002 29.1 3.4 45 232-276 70-118 (336)
383 TIGR01011 rpsB_bact ribosomal 23.5 1.2E+02 0.0026 27.4 4.3 30 232-268 155-185 (225)
384 TIGR01836 PHA_synth_III_C poly 23.4 1.1E+02 0.0024 28.7 4.1 64 202-277 83-153 (350)
385 cd06294 PBP1_ycjW_transcriptio 23.4 4.1E+02 0.0088 22.9 7.6 38 203-240 24-68 (270)
386 cd01544 PBP1_GalR Ligand-bindi 23.4 3.3E+02 0.0071 23.8 7.0 37 203-240 24-60 (270)
387 cd00381 IMPDH IMPDH: The catal 23.3 3.8E+02 0.0082 25.4 7.8 54 191-244 106-168 (325)
388 PF01513 NAD_kinase: ATP-NAD k 23.2 48 0.001 30.7 1.7 36 230-271 74-110 (285)
389 COG0244 RplJ Ribosomal protein 23.2 3.1E+02 0.0068 23.7 6.7 55 192-248 23-92 (175)
390 PLN02187 rooty/superroot1 23.0 83 0.0018 31.1 3.4 84 31-115 132-243 (462)
391 PRK05479 ketol-acid reductoiso 22.7 3.3E+02 0.0072 26.2 7.3 77 191-271 17-110 (330)
392 PRK14048 ferrichrome/ferrioxam 22.7 1.8E+02 0.004 27.6 5.6 45 223-270 112-157 (374)
393 PRK09265 aminotransferase AlaT 22.6 1E+02 0.0023 29.4 3.9 85 30-115 95-207 (404)
394 cd01537 PBP1_Repressors_Sugar_ 22.5 3.9E+02 0.0083 22.5 7.1 36 204-239 20-62 (264)
395 KOG1467 Translation initiation 22.5 3.2E+02 0.0069 28.1 7.2 78 188-270 382-470 (556)
396 COG0052 RpsB Ribosomal protein 22.4 1E+02 0.0022 28.7 3.5 30 232-268 156-186 (252)
397 COG1597 LCB5 Sphingosine kinas 22.4 2.4E+02 0.0052 26.4 6.2 44 203-246 23-72 (301)
398 PRK11070 ssDNA exonuclease Rec 22.3 1.7E+02 0.0038 30.2 5.6 36 193-228 130-166 (575)
399 PRK06843 inosine 5-monophospha 22.2 3.9E+02 0.0085 26.5 7.8 89 191-279 165-278 (404)
400 cd01147 HemV-2 Metal binding p 22.0 2.4E+02 0.0052 24.7 5.9 43 223-270 65-107 (262)
401 cd06311 PBP1_ABC_sugar_binding 22.0 4.3E+02 0.0093 23.0 7.5 59 204-267 20-91 (274)
402 PRK10667 Hha toxicity attenuat 21.9 15 0.00033 30.2 -1.7 15 59-73 83-97 (122)
403 cd05565 PTS_IIB_lactose PTS_II 21.9 3.8E+02 0.0083 21.1 6.3 57 203-266 18-77 (99)
404 PRK06756 flavodoxin; Provision 21.7 4.4E+02 0.0095 21.3 8.1 63 204-269 21-91 (148)
405 PRK02610 histidinol-phosphate 21.6 3.3E+02 0.0071 25.7 7.1 53 193-247 118-182 (374)
406 PRK09802 DNA-binding transcrip 21.6 1.5E+02 0.0032 27.4 4.5 73 193-266 108-186 (269)
407 PRK10906 DNA-binding transcrip 21.6 1.9E+02 0.0042 26.3 5.3 73 193-267 93-172 (252)
408 PF00318 Ribosomal_S2: Ribosom 21.6 1.2E+02 0.0026 27.0 3.8 30 232-268 143-173 (211)
409 PRK05928 hemD uroporphyrinogen 21.5 2.8E+02 0.0061 24.0 6.1 47 193-239 3-59 (249)
410 PTZ00340 O-sialoglycoprotein e 21.5 1.1E+02 0.0023 29.8 3.6 43 232-274 70-116 (345)
411 cd01141 TroA_d Periplasmic bin 21.4 1.6E+02 0.0034 24.7 4.4 39 223-267 60-98 (186)
412 PRK10423 transcriptional repre 21.4 3.3E+02 0.0072 24.5 6.8 39 203-241 76-121 (327)
413 PRK04761 ppnK inorganic polyph 21.3 92 0.002 28.7 3.0 34 232-271 25-59 (246)
414 TIGR01753 flav_short flavodoxi 21.3 3.5E+02 0.0075 21.2 6.2 32 205-238 19-51 (140)
415 PF00814 Peptidase_M22: Glycop 21.3 43 0.00092 30.9 0.9 38 232-269 50-89 (268)
416 cd06291 PBP1_Qymf_like Ligand 21.3 4.2E+02 0.0092 22.8 7.3 38 203-240 19-63 (265)
417 COG2201 CheB Chemotaxis respon 21.2 4.7E+02 0.01 25.5 7.9 46 192-238 2-53 (350)
418 cd02068 radical_SAM_B12_BD B12 21.1 1.7E+02 0.0038 23.1 4.4 52 192-243 17-77 (127)
419 PRK00286 xseA exodeoxyribonucl 21.1 4.1E+02 0.0088 26.1 7.8 75 191-265 135-228 (438)
420 COG3367 Uncharacterized conser 21.0 1.6E+02 0.0035 28.6 4.7 75 196-270 203-296 (339)
421 PRK11303 DNA-binding transcrip 21.0 5.1E+02 0.011 23.3 8.0 37 204-240 82-125 (328)
422 PRK07239 bifunctional uroporph 21.0 7.3E+02 0.016 23.6 9.4 76 191-270 11-107 (381)
423 COG1349 GlpR Transcriptional r 20.9 1.9E+02 0.0041 26.4 5.0 73 193-266 93-171 (253)
424 cd04737 LOX_like_FMN L-Lactate 20.9 6E+02 0.013 24.6 8.7 76 198-274 205-292 (351)
425 PRK00141 murD UDP-N-acetylmura 20.7 5E+02 0.011 25.7 8.4 30 192-221 16-46 (473)
426 PRK09605 bifunctional UGMP fam 20.6 1.2E+02 0.0027 30.4 4.1 37 232-268 69-107 (535)
427 TIGR02207 lipid_A_htrB lipid A 20.3 91 0.002 28.9 2.9 84 44-138 110-197 (303)
428 cd06275 PBP1_PurR Ligand-bindi 20.2 2.1E+02 0.0046 24.7 5.1 37 204-240 20-63 (269)
429 cd06288 PBP1_sucrose_transcrip 20.2 2.1E+02 0.0046 24.7 5.1 38 203-240 20-64 (269)
430 TIGR02637 RhaS rhamnose ABC tr 20.1 4.8E+02 0.01 23.3 7.6 61 202-267 17-87 (302)
431 COG4285 Uncharacterized conser 20.0 2.5E+02 0.0055 25.9 5.5 40 232-271 49-92 (253)
432 PF04016 DUF364: Domain of unk 20.0 1.2E+02 0.0026 25.4 3.3 27 192-220 12-38 (147)
No 1
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=8.2e-105 Score=744.10 Aligned_cols=266 Identities=53% Similarity=0.903 Sum_probs=245.0
Q ss_pred cceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEE
Q 039151 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLV 84 (279)
Q Consensus 5 ~~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~i 84 (279)
.|+|+|+|||||+|+|++|||+++++||||||||||||||+||||||+|||||||||||||||+|++|+||++|||+|+|
T Consensus 1 ~~~a~L~LeDGtvf~G~~fGA~g~~~GEvVFnTsMTGYqE~LTDPSY~gQIv~fTyP~IGNyGvn~~d~Es~~i~~~G~v 80 (368)
T COG0505 1 SMKAYLVLEDGTVFEGYSFGAEGTAVGEVVFNTSMTGYQEILTDPSYKGQIVTFTYPLIGNYGVNDEDFESDRIHAAGLV 80 (368)
T ss_pred CCceEEEecCCCEEEEEecCCCCcEEEEEEEeCCCCcccccccCCccCceEEEEeccccccccCCchhccccCceEEEEE
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCC-CCCCCCcccc
Q 039151 85 IRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISD 163 (279)
Q Consensus 85 v~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~-~~~~~~lv~~ 163 (279)
|||+|..|||||+.+||++|||++|||||+|||||||||+||++|+|+|+|.+++..+.+.+...++.+ .+.+.|||++
T Consensus 81 vre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTRaLtr~iR~~G~m~~~I~~~~~~~~~~~~~~~~~~~~~~~~dlv~~ 160 (368)
T COG0505 81 VRELSERPSNWRATESLDEYLKEEGIPGIAGIDTRALTRKIREKGAMKGVIATGPELDPAKLLERARAFPGILGTDLVKE 160 (368)
T ss_pred EcccccccCccccccCHHHHHHHcCCCceecccHHHHHHHHHhcCCcceEeecCcccChHHHHHHHhhcCCCCcccccce
Confidence 999999999999999999999999999999999999999999999999999987533333444444444 7888999999
Q ss_pred cccCCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCC
Q 039151 164 VSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG 243 (279)
Q Consensus 164 vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPG 243 (279)
|||+++|.|.. |... ...+.+|+++|||+|+||+|.|.++||+++|||+++++++|++++|||||||||||
T Consensus 161 VSt~~~~~~~~-----~~~~----~~~~~~Vv~iD~GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPG 231 (368)
T COG0505 161 VSTKEPYTWPG-----LNGG----GEPGKHVVVIDFGVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPG 231 (368)
T ss_pred eecCCceeccc-----cccC----CCCCcEEEEEEcCccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCC
Confidence 99999999863 1111 22357999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHC-CCCEeeecHHHHHHHHHcC
Q 039151 244 DPSAVPYAVAIVKELLG-KVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 244 dp~~~~~~i~~Ir~~~~-~~PILGICLGhQLLa~AlG 279 (279)
||..++..++.||++++ ++|+|||||||||||+|+|
T Consensus 232 DP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~G 268 (368)
T COG0505 232 DPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALG 268 (368)
T ss_pred ChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcC
Confidence 99999999999999995 5699999999999999998
No 2
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=2.1e-100 Score=735.21 Aligned_cols=278 Identities=87% Similarity=1.421 Sum_probs=249.1
Q ss_pred CCCcceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceee
Q 039151 2 PWNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLA 81 (279)
Q Consensus 2 ~~~~~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~ 81 (279)
||..|+|+|+||||++|+|++||++++++||||||||||||||+||||||+|||||||||||||||||++|+||++||++
T Consensus 51 ~~~~~~a~LvLedGt~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~GQiv~~T~P~IGNyGvn~~d~ES~~~~~~ 130 (415)
T PLN02771 51 PWKTSDARLVLEDGSVWKAKSFGARGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLA 130 (415)
T ss_pred CCCCCCEEEEECCCCEEEEEEcCCCCcEEEEEEEeCCCCcCChhhcCccccchhhhhcccCccccCCCchhhcccCCcEE
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCCCCCCCCcc
Q 039151 82 GLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLI 161 (279)
Q Consensus 82 g~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv 161 (279)
|+||||+|+.|||||+++||++||+++|||||+||||||||||||++|+|+|+|++++..+.+++.+.++.+++.+.|||
T Consensus 131 G~vv~e~~~~~s~~~~~~sL~~~L~~~~ipgI~giDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv 210 (415)
T PLN02771 131 GLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYDVDTRAITRRLREDGSLIGVLSTEDSKTDEELLKMSRSWDIVGIDLI 210 (415)
T ss_pred EEEeCcCCCCCCcccccCCHHHHHHHcCCcceecCcHHHHHHHHHhcCCeeEEEecCCCCCHHHHHHHHHhCCCccCCcc
Confidence 99999999999999999999999999999999999999999999999999999987542123344444444467788999
Q ss_pred cccccCCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCC
Q 039151 162 SDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG 241 (279)
Q Consensus 162 ~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgG 241 (279)
++|||+++|.|.......|.++.....+..+||+++|||.|+||+|+|+++||+++++|++.+++++++.+|||||||||
T Consensus 211 ~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvviD~G~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnG 290 (415)
T PLN02771 211 SGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAYDFGIKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNG 290 (415)
T ss_pred ceecCCCCEEecCCCcccccccccccCCCCCEEEEECCChHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCC
Confidence 99999999999643223444432211122369999999999999999999999999999999988988889999999999
Q ss_pred CCCCCCChHHHHHHHHHHCCCCEeeecHHHHHHHHHcC
Q 039151 242 PGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 242 PGdp~~~~~~i~~Ir~~~~~~PILGICLGhQLLa~AlG 279 (279)
||||.+.+..++.+++++.++|+||||||||+||+|+|
T Consensus 291 PGDP~~~~~~ie~ik~l~~~iPIlGICLGhQlLa~AlG 328 (415)
T PLN02771 291 PGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALG 328 (415)
T ss_pred CCChhHhhHHHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Confidence 99999888889999998888999999999999999998
No 3
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=9.8e-97 Score=702.83 Aligned_cols=263 Identities=55% Similarity=0.945 Sum_probs=240.4
Q ss_pred cceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEE
Q 039151 5 VANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLV 84 (279)
Q Consensus 5 ~~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~i 84 (279)
+|+|+|+|||||+|+|++||++++++||||||||||||||+||||||+|||||||||||||||||++|+||++||++|+|
T Consensus 2 ~~~~~L~LedG~~~~G~~~g~~~~~~GE~vF~T~mtGY~E~lTDPSy~gQi~~~t~P~iGnyGv~~~~~es~~~~~~g~v 81 (360)
T PRK12564 2 MMKAYLVLEDGTVFEGKAFGAEGETVGEVVFNTSMTGYQEILTDPSYAGQIVTFTYPLIGNYGVNREDFESDRPHAKGLI 81 (360)
T ss_pred CCcEEEEECCCCEEEEEecCCCccEEEEEEEECCcCCccccccCccccceeeeecccCceEECCCccccccCCccEEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCC-CCCCCCcccc
Q 039151 85 IRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISD 163 (279)
Q Consensus 85 v~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~-~~~~~~lv~~ 163 (279)
|||+|+.||||++.+||++||+++|||||+||||||||||||++|+|+|+|++++. +.+++.+.++++ +++..|+|++
T Consensus 82 v~~~~~~~s~~~~~~~l~~~l~~~~ipgi~gvDTR~l~~~iR~~G~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~v~~ 160 (360)
T PRK12564 82 VRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTRALTRKLREKGAMKGVIATEDF-DAEELLEKARAFPGLLGLDLVKE 160 (360)
T ss_pred ECcCCCCCCccccccCHHHHHHHCCCCCCCCCcHHHHHHHHHhcCCceEEEecCCC-CHHHHHHHHHcCCCCcccCCcce
Confidence 99999999999999999999999999999999999999999999999999988532 233445554444 6778899999
Q ss_pred cccCCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCC
Q 039151 164 VSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG 243 (279)
Q Consensus 164 vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPG 243 (279)
|||+++|.+... .++.+.||+++|||+|+||+|+|.++|++++++|++.+.+++.+.++||||||||||
T Consensus 161 vs~~~~~~~~~~-----------~~~~~~~I~viD~G~k~nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPg 229 (360)
T PRK12564 161 VSTKEPYPWPGP-----------GGELKYKVVAIDFGVKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPG 229 (360)
T ss_pred eCCCCCEECCCC-----------CCCCCCEEEEEeCCcHHHHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCC
Confidence 999999988421 012257999999999999999999999999999999888888767899999999999
Q ss_pred CCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151 244 DPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 244 dp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG 279 (279)
||.+....++.+++++ .++|+||||+|||+|+.|+|
T Consensus 230 dp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~G 266 (360)
T PRK12564 230 DPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALG 266 (360)
T ss_pred ChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhC
Confidence 9988778889999999 58999999999999999997
No 4
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=100.00 E-value=1.2e-96 Score=701.50 Aligned_cols=260 Identities=55% Similarity=0.934 Sum_probs=235.7
Q ss_pred eEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEEEec
Q 039151 8 ARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRS 87 (279)
Q Consensus 8 a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~iv~e 87 (279)
|+|+||||++|+|++||++++++||||||||||||||+||||||+|||||||||||||||||++|+||++||++|+||||
T Consensus 1 ~~L~LedG~~~~G~~~g~~~~~~GEvvF~T~mtGYqE~ltDPSy~gQi~~~T~P~iGNyG~~~~~~es~~~~~~g~iv~~ 80 (358)
T TIGR01368 1 AYLVLEDGTVFRGYSFGAEGTVAGEVVFNTGMTGYQEILTDPSYKGQIVVFTYPLIGNYGVNDEDAESKGIHVSGLVVRE 80 (358)
T ss_pred CEEEECCCCEEEEEecCCCccEEEEEEEeCCCCCCChhhcCCcccchhhhhccCCcceeCCCchhhcccCCcEEEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhc-CCCCCCCCccccccc
Q 039151 88 LSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSR-SWDIVGIDLISDVSG 166 (279)
Q Consensus 88 ~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~-~~~~~~~~lv~~vs~ 166 (279)
+|+.|||||+++||++||+++|||||+||||||||||||++|+|+|+|++++.+ .+++.+.++ ...+.+.|||++|||
T Consensus 81 ~~~~~s~~~~~~~l~~~l~~~~i~gi~gvDTR~lt~~iR~~G~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~v~~vs~ 159 (358)
T TIGR01368 81 LSDRYSNWRATESLDQFLKRHGIPGIYGVDTRALVKKIREKGTMKGVISTEDSN-DEELVQKASVSPDIDGINLVAEVST 159 (358)
T ss_pred CCCCCCcccccCCHHHHHHHCCCceEeCCcHHHHHHHHHhcCCeeEEEecCCCC-hHHHHHHHHhCCCCccCCccceecc
Confidence 999999999999999999999999999999999999999999999999875422 223333333 335667899999999
Q ss_pred CCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCC
Q 039151 167 KEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS 246 (279)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~ 246 (279)
+++|.|... ..+.++||+++|||+|+||+|+|+++|++++++|++.+++++.+..|||||||||||||.
T Consensus 160 ~~~~~~~~~-----------~~~~~~~i~viD~G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGPgdp~ 228 (358)
T TIGR01368 160 KEPYTWGQK-----------RGGKKKRVVVIDFGVKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPA 228 (358)
T ss_pred CCCEEeCCC-----------CCCCccEEEEEeCCcHHHHHHHHHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCCCCHH
Confidence 999998420 012236999999999999999999999999999999888888777899999999999998
Q ss_pred CChHHHHHHHHHHCCCCEeeecHHHHHHHHHcC
Q 039151 247 AVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 247 ~~~~~i~~Ir~~~~~~PILGICLGhQLLa~AlG 279 (279)
+...+++.++++++++|+||||||||+|+.|+|
T Consensus 229 ~~~~~i~~i~~~~~~~PILGIClG~QlLa~a~G 261 (358)
T TIGR01368 229 AVEPAIETIRKLLEKIPIFGICLGHQLLALAFG 261 (358)
T ss_pred HHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhC
Confidence 878889999999889999999999999999997
No 5
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=100.00 E-value=2.1e-96 Score=703.96 Aligned_cols=273 Identities=45% Similarity=0.768 Sum_probs=241.0
Q ss_pred ceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEEE
Q 039151 6 ANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVI 85 (279)
Q Consensus 6 ~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~iv 85 (279)
.+|+|+||||++|+|++||++++++||||||||||||||+||||||+|||||||||||||||||++|+||++||++|+||
T Consensus 5 ~~~~L~LedG~~~~G~~~G~~~~~~GEvvF~T~mtGYqE~lTDPSy~gQiv~~T~P~iGNyGv~~~~~es~~~~~~g~iv 84 (382)
T CHL00197 5 IPAILVLEDGTYYRGWSFSNPITTIGEVVFNTGMTGYQEIITDPSYFEQIVTFTYPEIGNTGINLEDIESVKIQVKGIIA 84 (382)
T ss_pred CcEEEEECCCCEEEEEeCCCCccEEEEEEEeCCCCCCCccccCcccccceeeeccCCcceecCChhhhcccCccEEEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCC-CCCCCCccccc
Q 039151 86 RSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDV 164 (279)
Q Consensus 86 ~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~-~~~~~~lv~~v 164 (279)
||+|+.|||||+++||++||+++|||||+||||||||||||++|+|+|+|+++..+ .+++.+.++.+ .+++.|+|++|
T Consensus 85 ~e~~~~~s~~~~~~sl~~~l~~~~ipgi~gvDTR~lt~~iR~~G~~~g~i~~~~~~-~~~~~~~~~~~~~~~~~~~v~~v 163 (382)
T CHL00197 85 KNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTRALTQHLRRFGTMNGCISNQNLN-LSYLRAKIKESPHMPSSDLIPRV 163 (382)
T ss_pred CCCCCCCCcccccCCHHHHHHHCCCceEeCCcHHHHHHHHHhcCCceEEEEcCCCC-hHHHHHHHHcCCCCccCCcccee
Confidence 99999999999999999999999999999999999999999999999999875422 23333333333 67789999999
Q ss_pred ccCCeEEecCCCCCCCCCCc--cCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCC
Q 039151 165 SGKEPFEWVESTKPDWDFNT--HERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGP 242 (279)
Q Consensus 165 s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGP 242 (279)
||+++|.|.......|...+ ...++.++||++||||+|+||+|+|+++|+++.++|++.+.+++.+.+||||||||||
T Consensus 164 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~g~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilSgGP 243 (382)
T CHL00197 164 TTSSYYEWDEKSHPSFYLADNKRPHSSYQLKIIVIDFGVKYNILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGP 243 (382)
T ss_pred cCCCCEEecCCCccccccccccccccCCCCEEEEEECCcHHHHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEcCCC
Confidence 99999998532110110000 0112235799999999999999999999999999999988888877899999999999
Q ss_pred CCCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151 243 GDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 243 Gdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG 279 (279)
|+|.+....++.+++++ .++|+||||||||+|+.|+|
T Consensus 244 g~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~G 281 (382)
T CHL00197 244 GDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALE 281 (382)
T ss_pred CChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhC
Confidence 99998778888999988 68999999999999999997
No 6
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=1.3e-96 Score=700.41 Aligned_cols=255 Identities=40% Similarity=0.730 Sum_probs=235.6
Q ss_pred ceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEEE
Q 039151 6 ANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVI 85 (279)
Q Consensus 6 ~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~iv 85 (279)
|+|+|+|||||+|+|++||++++++||||||||||||||+||||||+|||||||||||||||||++|+||++||++|+||
T Consensus 1 m~~~l~LedG~~~~g~~~g~~~~~~GE~vf~T~mtGYqe~ltDpsy~gQi~~~t~P~iGnyGi~~~~~es~~~~~~g~vv 80 (354)
T PRK12838 1 MKAYLILEDGTVFEGELIGAPIDVTGEIVFNTGMTGYQEVLTDPSYKGQIVVFTYPLIGNYGINADDYESKQPQVKGVIV 80 (354)
T ss_pred CCeEEEeCCCCEEEEEECCCCCcEEEEEEEeCCCCCCCccccCCccccceeecccCCccEeCCCchhhcccCceEEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCCCCCCCCcccccc
Q 039151 86 RSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 165 (279)
Q Consensus 86 ~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~vs 165 (279)
||+|+.|||||+++||++||+++|||||+||||||||||||++|+|+|+|+++. + ++..+.++.+ +++.|||++||
T Consensus 81 ~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR~lt~~lR~~G~~~~~i~~~~--~-~~~~~~~~~~-~~~~~~v~~vs 156 (354)
T PRK12838 81 YELSREGSHYRAKQSLDDFLKEWNIPGISGVDTRALVKHIREKGTMKASITTTD--D-AHAFDQIKAL-VLPKNVVAQVS 156 (354)
T ss_pred CcCCCCCCcccccCCHHHHHHHCCCCcccCCCHHHHHHHHHHcCCceEEEecCC--c-HHHHHHHHhh-hccCCcccEEE
Confidence 999999999999999999999999999999999999999999999999998853 1 2333444444 67789999999
Q ss_pred cCCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCC
Q 039151 166 GKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP 245 (279)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp 245 (279)
|+++|.+. ..+.+|+++|||+|+||+++|.++|++++++|++.+.+++.+.++||||||||||||
T Consensus 157 ~~~~~~~~---------------~~~~~V~viD~G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGPgdp 221 (354)
T PRK12838 157 TKEPYTYG---------------NGGKHVALIDFGYKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDP 221 (354)
T ss_pred cCCCEEeC---------------CCCCEEEEECCCHHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEEcCCCCCh
Confidence 99999984 234699999999999999999999999999999888788776789999999999999
Q ss_pred CCChHHHHHHHHHHCCCCEeeecHHHHHHHHHcC
Q 039151 246 SAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 246 ~~~~~~i~~Ir~~~~~~PILGICLGhQLLa~AlG 279 (279)
.+....++.+++++.++|+||||||||+|+.|+|
T Consensus 222 ~~~~~~~~~i~~~~~~~PvlGIClG~QlLa~a~G 255 (354)
T PRK12838 222 KELQPYLPEIKKLISSYPILGICLGHQLIALALG 255 (354)
T ss_pred HHhHHHHHHHHHHhcCCCEEEECHHHHHHHHHhC
Confidence 8877788899998866999999999999999997
No 7
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=100.00 E-value=1.1e-81 Score=634.18 Aligned_cols=248 Identities=48% Similarity=0.771 Sum_probs=231.6
Q ss_pred eeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCC--Cc------cccccc
Q 039151 7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNF--DD------EESRQC 78 (279)
Q Consensus 7 ~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~--~~------~Es~~~ 78 (279)
.+.|+||||++|.|++||++..+.||+||||||+||||+||||||+|||++||||+|||||+|. .| +||.+|
T Consensus 2 ~s~L~LeDGsv~~G~SFGA~~svaGE~VFqTgmvGYpEslTDPSY~gQiLv~T~PlIGNyGVP~~~~DE~l~~~fES~~I 81 (1435)
T KOG0370|consen 2 RSTLVLEDGSVLPGYSFGAPKSVAGELVFQTGMVGYPESLTDPSYKGQILVFTYPLIGNYGVPPDARDEGLLKHFESGQI 81 (1435)
T ss_pred ceEEEeccCCeecccccCCCCceeeEEEEecCCcCCccccCCccccceEEEEecccccCCCCCCCccccccccccccCce
Confidence 4589999999999999999999999999999999999999999999999999999999999993 23 499999
Q ss_pred eeeEEEEeccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCCCCCCC
Q 039151 79 FLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGI 158 (279)
Q Consensus 79 ~~~g~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (279)
|++|+||+++|..+|||++.+||.+||+++|||||+|||||+|||+|||+|+|.|+|+.+.... ..++++.+
T Consensus 82 ~vaglVV~~ys~~ysHW~a~~SL~eWlq~~gVp~i~gvDTRaLtk~lReqGSmLgkl~~e~~~~--------~~vdpn~~ 153 (1435)
T KOG0370|consen 82 HVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTRALTKKLREQGSMLGKLSIEKSPV--------LFVDPNKR 153 (1435)
T ss_pred EEEEEEhhhhccchhhhhhhhhHHHHHHhcCCCccccccHHHHHHHHHhcCcceeEEEecCCCC--------cccCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999876432 14589999
Q ss_pred CcccccccCCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEE
Q 039151 159 DLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238 (279)
Q Consensus 159 ~lv~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiL 238 (279)
||+++||+|+|+.|. .|+..+|+++|||+|.|++|+|.++|++++|+||+.++.+. +||||||
T Consensus 154 nLvs~VS~Kep~~y~--------------~Gk~~~I~aiDcG~K~N~IRcL~~RGa~vtVvPw~~~i~~~---~yDGlfl 216 (1435)
T KOG0370|consen 154 NLVSQVSTKEPKVYG--------------DGKSLRILAIDCGLKYNQIRCLVKRGAEVTVVPWDYPIAKE---EYDGLFL 216 (1435)
T ss_pred cchhhheeccceEEc--------------CCcccEEEEcccCchHHHHHHHHHhCceEEEecCCcccccc---ccceEEE
Confidence 999999999999985 35678999999999999999999999999999999876653 8999999
Q ss_pred cCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151 239 SNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 239 SgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG 279 (279)
|||||||..++..++.+++++ .++|+||||+|||+||+|.|
T Consensus 217 SNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~AaG 258 (1435)
T KOG0370|consen 217 SNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALAAG 258 (1435)
T ss_pred eCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHhhC
Confidence 999999999999999999999 56999999999999999987
No 8
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=100.00 E-value=4e-73 Score=468.78 Aligned_cols=131 Identities=56% Similarity=0.883 Sum_probs=104.1
Q ss_pred ceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEEE
Q 039151 6 ANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVI 85 (279)
Q Consensus 6 ~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~iv 85 (279)
|+|+|+||||++|+|++||+++++.||||||||||||||+||||||+||||+||||||||||+|++|+||++||++|+||
T Consensus 1 M~a~LvLeDG~~f~G~~~G~~~~~~GEvVFnT~MtGYqE~lTDPSY~gQIlvfTyP~IGNyGv~~~~~ES~~~~~~g~iv 80 (131)
T PF00988_consen 1 MKAYLVLEDGTVFEGKSFGAPGTVTGEVVFNTGMTGYQEILTDPSYAGQILVFTYPLIGNYGVNEEDFESDRIHVKGLIV 80 (131)
T ss_dssp -EEEEEETTS-EEEEEE-SBSEEEEEEEEEE--SS-HHHHHT-GGGBTEEEEESSSB--TT-B-GGG-SSSS--BSEEE-
T ss_pred CCEEEEECCCCEEEEEEecCCCcEEEEEEEEccccCCchhhcCCcCCceEEEEeccCCeEEcCCcccCCCCceeeeeeee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEe
Q 039151 86 RSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLS 136 (279)
Q Consensus 86 ~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~ 136 (279)
||+|+.||||++++||++||++++||||+||||||||||||++|+|+|+|+
T Consensus 81 ~e~~~~~s~~~~~~sL~~~L~~~~ipgi~gvDTRaLt~~lR~~G~m~g~I~ 131 (131)
T PF00988_consen 81 RELSDIPSHWRSEMSLDEWLKEHGIPGISGVDTRALTRKLREKGSMKGVIT 131 (131)
T ss_dssp SB--SS---TT-SB-HHHHHHHTT-EEEESS-HHHHHHHHHHH--EEEEEE
T ss_pred ccccCCCccccccCCHHHHHHHCCCeeeeCCcHHHHHHHHHhcCCceEEEC
Confidence 999999999999999999999999999999999999999999999999985
No 9
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.84 E-value=8.4e-21 Score=169.06 Aligned_cols=88 Identities=32% Similarity=0.554 Sum_probs=78.6
Q ss_pred cEEEEEEc--CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151 192 YRVIAYDF--GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM 269 (279)
Q Consensus 192 ~~I~viD~--G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL 269 (279)
.||++||+ |+++|+++.|+++|++++++|++.+.+++.+.+||+||||||||+|.+.....+.++.+.+++|+||||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGICl 81 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICL 81 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEcH
Confidence 47999999 7899999999999999999999888888877799999999999999876555667766557899999999
Q ss_pred HHHHHHHHcC
Q 039151 270 GHQLLGQALG 279 (279)
Q Consensus 270 GhQLLa~AlG 279 (279)
|||+|+.|+|
T Consensus 82 G~Qlla~alG 91 (208)
T PRK05637 82 GFQALLEHHG 91 (208)
T ss_pred HHHHHHHHcC
Confidence 9999999997
No 10
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.83 E-value=1.2e-20 Score=165.08 Aligned_cols=87 Identities=24% Similarity=0.597 Sum_probs=77.4
Q ss_pred EEEEEEc--CchHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151 193 RVIAYDF--GIKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM 269 (279)
Q Consensus 193 ~I~viD~--G~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL 269 (279)
+|++||+ .+++|++++|+++|+++.+++++ .+.+++.+.+||+||||||||+|.+.....+.++.+..++|+||||+
T Consensus 1 ~il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGICl 80 (187)
T PRK08007 1 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCL 80 (187)
T ss_pred CEEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECH
Confidence 4899998 46999999999999999999987 47777776789999999999999987777788887557999999999
Q ss_pred HHHHHHHHcC
Q 039151 270 GHQLLGQALG 279 (279)
Q Consensus 270 GhQLLa~AlG 279 (279)
|||+||.|+|
T Consensus 81 G~Q~la~a~G 90 (187)
T PRK08007 81 GHQAMAQAFG 90 (187)
T ss_pred HHHHHHHHcC
Confidence 9999999998
No 11
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.83 E-value=2.2e-20 Score=163.47 Aligned_cols=88 Identities=27% Similarity=0.640 Sum_probs=80.8
Q ss_pred cEEEEEEc--CchHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeec
Q 039151 192 YRVIAYDF--GIKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGIC 268 (279)
Q Consensus 192 ~~I~viD~--G~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGIC 268 (279)
++|++||+ .+.+|++++|++.|++++|++++ .+.+++.+.+||+|+||+|||+|.+.....+.|+++.+++|+||||
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGVC 81 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGVC 81 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEEC
Confidence 58999998 67999999999999999999987 5666677788999999999999998888999999997789999999
Q ss_pred HHHHHHHHHcC
Q 039151 269 MGHQLLGQALG 279 (279)
Q Consensus 269 LGhQLLa~AlG 279 (279)
||||.|++|+|
T Consensus 82 LGHQai~~~fG 92 (191)
T COG0512 82 LGHQAIAEAFG 92 (191)
T ss_pred ccHHHHHHHhC
Confidence 99999999998
No 12
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.82 E-value=4.6e-20 Score=161.31 Aligned_cols=87 Identities=26% Similarity=0.583 Sum_probs=76.9
Q ss_pred EEEEEEcC--chHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151 193 RVIAYDFG--IKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM 269 (279)
Q Consensus 193 ~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL 269 (279)
+|++||+. +.+|+++.|+++|+++++++++ .+++++.+.+||+||||||||+|.+.......++.+..++|+||||+
T Consensus 1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~ 80 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCL 80 (191)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECH
Confidence 38999984 5899999999999999999987 57888877899999999999999887666777776557999999999
Q ss_pred HHHHHHHHcC
Q 039151 270 GHQLLGQALG 279 (279)
Q Consensus 270 GhQLLa~AlG 279 (279)
|||+||.|+|
T Consensus 81 G~Qlla~~~G 90 (191)
T PRK06774 81 GHQALGQAFG 90 (191)
T ss_pred HHHHHHHHhC
Confidence 9999999997
No 13
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.81 E-value=1.1e-19 Score=159.07 Aligned_cols=87 Identities=28% Similarity=0.563 Sum_probs=76.9
Q ss_pred EEEEEEcC--chHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151 193 RVIAYDFG--IKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM 269 (279)
Q Consensus 193 ~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL 269 (279)
+|++||+. +++|++++|+++|+++.++|++ .+.+++.+.+|||||||||||+|.+.....+.++++..++|+||||+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~ 80 (188)
T TIGR00566 1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCL 80 (188)
T ss_pred CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEECH
Confidence 38999984 5899999999999999999976 46788877789999999999999876666788888756899999999
Q ss_pred HHHHHHHHcC
Q 039151 270 GHQLLGQALG 279 (279)
Q Consensus 270 GhQLLa~AlG 279 (279)
|||+|+.|+|
T Consensus 81 G~Qll~~~~G 90 (188)
T TIGR00566 81 GHQAMGQAFG 90 (188)
T ss_pred HHHHHHHHcC
Confidence 9999999997
No 14
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.81 E-value=1.1e-19 Score=160.21 Aligned_cols=87 Identities=28% Similarity=0.600 Sum_probs=76.4
Q ss_pred EEEEEEcC--chHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151 193 RVIAYDFG--IKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM 269 (279)
Q Consensus 193 ~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL 269 (279)
+|++||+. +.+|+.++|+++|+++.+++++ .+.+++.+.+||+||||||||+|.+.....+.++.+..++|+|||||
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGICl 80 (195)
T PRK07649 1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCL 80 (195)
T ss_pred CEEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcH
Confidence 48999984 5899999999999999999987 56677766789999999999999987666777776557999999999
Q ss_pred HHHHHHHHcC
Q 039151 270 GHQLLGQALG 279 (279)
Q Consensus 270 GhQLLa~AlG 279 (279)
|||+|+.|+|
T Consensus 81 G~Qlla~~lG 90 (195)
T PRK07649 81 GHQSIAQVFG 90 (195)
T ss_pred HHHHHHHHcC
Confidence 9999999997
No 15
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.80 E-value=1.5e-19 Score=157.86 Aligned_cols=87 Identities=31% Similarity=0.666 Sum_probs=74.9
Q ss_pred EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCC-ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151 193 RVIAYDFGI--KHNILRRLASYGCQIIVVPSTW-PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM 269 (279)
Q Consensus 193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~-~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL 269 (279)
+|++||++. ++++.++|+++|++++++|++. +.+++.+.+|||||||||||+|.+.....+.++++..++|+||||+
T Consensus 1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGICl 80 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCL 80 (189)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECH
Confidence 489999974 8999999999999999999874 5556656679999999999999876666677776546899999999
Q ss_pred HHHHHHHHcC
Q 039151 270 GHQLLGQALG 279 (279)
Q Consensus 270 GhQLLa~AlG 279 (279)
|||+|+.|+|
T Consensus 81 G~Qlla~alG 90 (189)
T PRK05670 81 GHQAIGEAFG 90 (189)
T ss_pred HHHHHHHHhC
Confidence 9999999997
No 16
>PLN02335 anthranilate synthase
Probab=99.80 E-value=1.8e-19 Score=161.90 Aligned_cols=88 Identities=34% Similarity=0.594 Sum_probs=75.7
Q ss_pred cEEEEEEc--CchHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeec
Q 039151 192 YRVIAYDF--GIKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGIC 268 (279)
Q Consensus 192 ~~I~viD~--G~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGIC 268 (279)
.+|++||+ ++++||.++|+++|+++++++++ .+.+++...+||+||||||||+|.+.....+.++++-.++|+||||
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGIC 98 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVC 98 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEec
Confidence 58999998 56999999999999999999986 4677776678999999999999987655556665543689999999
Q ss_pred HHHHHHHHHcC
Q 039151 269 MGHQLLGQALG 279 (279)
Q Consensus 269 LGhQLLa~AlG 279 (279)
||||+|+.++|
T Consensus 99 lG~QlLa~alG 109 (222)
T PLN02335 99 MGLQCIGEAFG 109 (222)
T ss_pred HHHHHHHHHhC
Confidence 99999999997
No 17
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.80 E-value=2.9e-19 Score=154.73 Aligned_cols=86 Identities=57% Similarity=1.042 Sum_probs=78.1
Q ss_pred EEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHH
Q 039151 194 VIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQ 272 (279)
Q Consensus 194 I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQ 272 (279)
|+++|||.++|+.++|++.|++++++|++.+.+++...++|||||||||++|.+.....+.+++++ .++|+||||+|||
T Consensus 1 i~i~d~g~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~Q 80 (178)
T cd01744 1 VVVIDFGVKHNILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQ 80 (178)
T ss_pred CEEEecCcHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHHH
Confidence 589999999999999999999999999987766665568999999999999988778888999998 5799999999999
Q ss_pred HHHHHcC
Q 039151 273 LLGQALG 279 (279)
Q Consensus 273 LLa~AlG 279 (279)
+|+.++|
T Consensus 81 ~l~~~~G 87 (178)
T cd01744 81 LLALALG 87 (178)
T ss_pred HHHHHcC
Confidence 9999997
No 18
>CHL00101 trpG anthranilate synthase component 2
Probab=99.79 E-value=4.9e-19 Score=155.04 Aligned_cols=87 Identities=22% Similarity=0.473 Sum_probs=73.8
Q ss_pred EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151 193 RVIAYDFGI--KHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM 269 (279)
Q Consensus 193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL 269 (279)
+|++||++. ++|+.|.|+++|+++.+++++ .+.+++...+|||||||||||+|.+.....+.++.+..++|+||||+
T Consensus 1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGICl 80 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCL 80 (190)
T ss_pred CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEch
Confidence 489999974 899999999999999999976 56767766689999999999999876555555554337999999999
Q ss_pred HHHHHHHHcC
Q 039151 270 GHQLLGQALG 279 (279)
Q Consensus 270 GhQLLa~AlG 279 (279)
|||+||.|+|
T Consensus 81 G~Qlla~~~G 90 (190)
T CHL00101 81 GHQSIGYLFG 90 (190)
T ss_pred hHHHHHHHhC
Confidence 9999999997
No 19
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.77 E-value=1.4e-18 Score=152.43 Aligned_cols=87 Identities=25% Similarity=0.526 Sum_probs=75.2
Q ss_pred EEEEEEcC--chHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151 193 RVIAYDFG--IKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM 269 (279)
Q Consensus 193 ~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL 269 (279)
+|++||+. +++|++++|+++|+++.+++++ .+.+++.+.+||++|+||||++|.+.....+.++.+..++|+||||+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGICl 80 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCL 80 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcH
Confidence 48999984 5999999999999999999987 46666666689999999999999876666777776447999999999
Q ss_pred HHHHHHHHcC
Q 039151 270 GHQLLGQALG 279 (279)
Q Consensus 270 GhQLLa~AlG 279 (279)
|||+||.|+|
T Consensus 81 G~Qlia~a~G 90 (193)
T PRK08857 81 GHQAIAQVFG 90 (193)
T ss_pred HHHHHHHHhC
Confidence 9999999997
No 20
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.74 E-value=5.5e-18 Score=146.88 Aligned_cols=85 Identities=35% Similarity=0.674 Sum_probs=75.4
Q ss_pred EEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhh--ccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecH
Q 039151 195 IAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETL--KLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICM 269 (279)
Q Consensus 195 ~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~--~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICL 269 (279)
++||+| .++++.++|+++|+++++++++.+.++.. ..++|||||||||+++.+....++.++++. .++|+||||+
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~ 80 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICL 80 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETH
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCccccccccccccccccccceEEEEEee
Confidence 689998 68999999999999999999876554442 468999999999999998777888899888 5999999999
Q ss_pred HHHHHHHHcC
Q 039151 270 GHQLLGQALG 279 (279)
Q Consensus 270 GhQLLa~AlG 279 (279)
|||+||.|+|
T Consensus 81 G~Q~la~~~G 90 (192)
T PF00117_consen 81 GHQILAHALG 90 (192)
T ss_dssp HHHHHHHHTT
T ss_pred hhhhhHHhcC
Confidence 9999999997
No 21
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.73 E-value=1.9e-17 Score=144.79 Aligned_cols=86 Identities=23% Similarity=0.408 Sum_probs=72.2
Q ss_pred cEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCC-ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeec
Q 039151 192 YRVIAYDFG--IKHNILRRLASYGCQIIVVPSTW-PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGIC 268 (279)
Q Consensus 192 ~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~-~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGIC 268 (279)
+||++||++ +.+|+.++|+++|+++.+++.+. +.+++ .++|+|||+||||+|...+...+.|+++..++|+||||
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l--~~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGIC 79 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEV--ENFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGVC 79 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHh--ccCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEEc
Confidence 689999996 47899999999999999998642 34444 36899999999998876666677787643799999999
Q ss_pred HHHHHHHHHcC
Q 039151 269 MGHQLLGQALG 279 (279)
Q Consensus 269 LGhQLLa~AlG 279 (279)
||||+||.|+|
T Consensus 80 lG~Qlla~~~G 90 (190)
T PRK06895 80 LGHQTLCEFFG 90 (190)
T ss_pred HHHHHHHHHhC
Confidence 99999999987
No 22
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.72 E-value=3.4e-17 Score=142.60 Aligned_cols=85 Identities=36% Similarity=0.613 Sum_probs=73.2
Q ss_pred EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHH
Q 039151 194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMG 270 (279)
Q Consensus 194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLG 270 (279)
|++||+|. .+++.+.|+++|++++++|++.+.+++.+.++|||||+|||+++.+. .....++.++ .++|+||||+|
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~Gg~~~~~~~-~~~~~i~~~~~~~~PilGIC~G 79 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAE-NAPRADEKIFELGVPVLGICYG 79 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEECCCCCCcCcC-CchHHHHHHHhCCCCEEEECHH
Confidence 68999987 46699999999999999999887777766667899999999998764 3456778877 69999999999
Q ss_pred HHHHHHHcC
Q 039151 271 HQLLGQALG 279 (279)
Q Consensus 271 hQLLa~AlG 279 (279)
||+|+.|+|
T Consensus 80 ~Qll~~~lg 88 (188)
T TIGR00888 80 MQLMAKQLG 88 (188)
T ss_pred HHHHHHhcC
Confidence 999999987
No 23
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.72 E-value=3.2e-17 Score=146.50 Aligned_cols=88 Identities=30% Similarity=0.562 Sum_probs=75.3
Q ss_pred cEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCC-hhhhh--ccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEe
Q 039151 192 YRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWP-ASETL--KLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVF 265 (279)
Q Consensus 192 ~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~-~~~i~--~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PIL 265 (279)
+||+++|++ ..+++.++|+++|+++.+++++.+ .++.. ..++|||||||||++|.+....++++++++ .++|+|
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiL 80 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLL 80 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEE
Confidence 589999995 478899999999999999998753 22332 137999999999999987777788999998 689999
Q ss_pred eecHHHHHHHHHcC
Q 039151 266 GICMGHQLLGQALG 279 (279)
Q Consensus 266 GICLGhQLLa~AlG 279 (279)
|||+|||+|+.|+|
T Consensus 81 GIC~G~Qlla~a~G 94 (214)
T PRK07765 81 GVCLGHQAIGVAFG 94 (214)
T ss_pred EEccCHHHHHHHhC
Confidence 99999999999998
No 24
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.68 E-value=1.8e-16 Score=137.39 Aligned_cols=85 Identities=32% Similarity=0.588 Sum_probs=69.2
Q ss_pred EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhh-hccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecH
Q 039151 194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASET-LKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICM 269 (279)
Q Consensus 194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i-~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICL 269 (279)
|+++|+|. .+++.+.|+++|+++.+++++.+.+++ ...++|||||+|||+++.+.. ....+++.+ .++|+||||+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~-~~~~i~~~~~~~~PvlGIC~ 79 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAG-ISLEIIRALAGKVPILGVCL 79 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccch-hHHHHHHHHhcCCCEEEECH
Confidence 68999974 788999999999999999998664432 225799999999999997654 344444445 7899999999
Q ss_pred HHHHHHHHcC
Q 039151 270 GHQLLGQALG 279 (279)
Q Consensus 270 GhQLLa~AlG 279 (279)
|||+||.|+|
T Consensus 80 G~Qlla~~~G 89 (184)
T cd01743 80 GHQAIAEAFG 89 (184)
T ss_pred hHHHHHHHhC
Confidence 9999999987
No 25
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.68 E-value=1.3e-16 Score=159.62 Aligned_cols=88 Identities=27% Similarity=0.511 Sum_probs=73.1
Q ss_pred cEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCC----hhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEe
Q 039151 192 YRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWP----ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVF 265 (279)
Q Consensus 192 ~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~----~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PIL 265 (279)
+||++||++ +.+||.+.|++.|++++|++.+.+ .+++...+||+||||||||+|.+.....+.++.+..++|||
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iPIL 81 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPII 81 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCCEE
Confidence 489999996 489999999999999999986543 55665668999999999999987654444555444799999
Q ss_pred eecHHHHHHHHHcC
Q 039151 266 GICMGHQLLGQALG 279 (279)
Q Consensus 266 GICLGhQLLa~AlG 279 (279)
|||+|||+|+.++|
T Consensus 82 GIClG~QlLa~a~G 95 (531)
T PRK09522 82 GICLGHQAIVEAYG 95 (531)
T ss_pred EEcHHHHHHHHhcC
Confidence 99999999999997
No 26
>PRK13566 anthranilate synthase; Provisional
Probab=99.67 E-value=2.2e-16 Score=162.79 Aligned_cols=91 Identities=27% Similarity=0.512 Sum_probs=79.6
Q ss_pred CCCccEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCE
Q 039151 188 NSKTYRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPV 264 (279)
Q Consensus 188 ~~~~~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PI 264 (279)
++.+++|++||++ ..+++.++|+++|+++++++++.+.+.+...++|+||||||||+|.+. ...++|++++ .++||
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d~-~~~~lI~~a~~~~iPI 601 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSDF-DCKATIDAALARNLPI 601 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhhC-CcHHHHHHHHHCCCcE
Confidence 4567899999998 689999999999999999998876555555689999999999999864 3678888888 69999
Q ss_pred eeecHHHHHHHHHcC
Q 039151 265 FGICMGHQLLGQALG 279 (279)
Q Consensus 265 LGICLGhQLLa~AlG 279 (279)
||||+|||+|+.|+|
T Consensus 602 LGIClG~QlLa~alG 616 (720)
T PRK13566 602 FGVCLGLQAIVEAFG 616 (720)
T ss_pred EEEehhHHHHHHHcC
Confidence 999999999999997
No 27
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.67 E-value=2.8e-16 Score=139.29 Aligned_cols=88 Identities=39% Similarity=0.575 Sum_probs=74.9
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCC-CeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCC
Q 039151 192 YRVIAYDFGI--KHNILRRLASYG-CQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVP 263 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G-~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~P 263 (279)
.+|+|+|||. .+-|.|.+++.| ...+++|++.+.+++.+.+||||||||||.++++. +...+.|+++. .++|
T Consensus 2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~p 81 (198)
T COG0518 2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKP 81 (198)
T ss_pred cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCC
Confidence 3799999997 567899999999 77788899988888887889999999999887654 34566677776 5778
Q ss_pred EeeecHHHHHHHHHcC
Q 039151 264 VFGICMGHQLLGQALG 279 (279)
Q Consensus 264 ILGICLGhQLLa~AlG 279 (279)
+||||+|||+||.+||
T Consensus 82 vLGIC~G~Ql~A~~lG 97 (198)
T COG0518 82 VLGICLGHQLLAKALG 97 (198)
T ss_pred EEEEChhHHHHHHHhC
Confidence 9999999999999998
No 28
>PLN02347 GMP synthetase
Probab=99.67 E-value=3e-16 Score=157.13 Aligned_cols=87 Identities=32% Similarity=0.503 Sum_probs=73.0
Q ss_pred EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC--hHHHH-HHHHHH-CCCCEee
Q 039151 193 RVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV--PYAVA-IVKELL-GKVPVFG 266 (279)
Q Consensus 193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~--~~~i~-~Ir~~~-~~~PILG 266 (279)
+|++||||. .++|.|.|+++|+.++++|++.+++++.+.++|||||||||+++.+. +...+ .++.+. .++|+||
T Consensus 12 ~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILG 91 (536)
T PLN02347 12 VVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLG 91 (536)
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCeEEEEECCCCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEEE
Confidence 799999997 47899999999999999999988888877789999999999998653 22222 333333 5899999
Q ss_pred ecHHHHHHHHHcC
Q 039151 267 ICMGHQLLGQALG 279 (279)
Q Consensus 267 ICLGhQLLa~AlG 279 (279)
||+|||+|+.++|
T Consensus 92 IClG~QlLa~alG 104 (536)
T PLN02347 92 ICYGMQLIVQKLG 104 (536)
T ss_pred ECHHHHHHHHHcC
Confidence 9999999999997
No 29
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.67 E-value=2.6e-16 Score=135.47 Aligned_cols=85 Identities=36% Similarity=0.627 Sum_probs=68.0
Q ss_pred EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHH
Q 039151 194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMG 270 (279)
Q Consensus 194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLG 270 (279)
|++||+|. ..++.++|+++|++++++|++.+.++....++|||||+|||+++.+.. .....+.++ .++|+||||+|
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~~~~~~~-~~~~~~~~~~~~~PilGIC~G 79 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEED-APRVDPEIFELGVPVLGICYG 79 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCcccccccc-cchhhHHHHhcCCCEEEEcHH
Confidence 57999986 477999999999999999988765543335899999999999886532 123344455 48999999999
Q ss_pred HHHHHHHcC
Q 039151 271 HQLLGQALG 279 (279)
Q Consensus 271 hQLLa~AlG 279 (279)
||+|+.|+|
T Consensus 80 ~Qll~~~~g 88 (181)
T cd01742 80 MQLIAKALG 88 (181)
T ss_pred HHHHHHhcC
Confidence 999999987
No 30
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.65 E-value=5.3e-16 Score=159.79 Aligned_cols=90 Identities=26% Similarity=0.492 Sum_probs=76.0
Q ss_pred CCccEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEe
Q 039151 189 SKTYRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVF 265 (279)
Q Consensus 189 ~~~~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PIL 265 (279)
+.+.+|++||+| ..+++.++|+++|+++.+++++...+.+...++|+||||||||+|.+. ...+.|++++ .++|+|
T Consensus 514 ~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILsgGPGsp~d~-~~~~~I~~~~~~~iPvL 592 (717)
T TIGR01815 514 GEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPADF-DVAGTIDAALARGLPVF 592 (717)
T ss_pred CCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEcCCCCCchhc-ccHHHHHHHHHCCCCEE
Confidence 456799999998 589999999999999999987654333334579999999999999864 4567888888 699999
Q ss_pred eecHHHHHHHHHcC
Q 039151 266 GICMGHQLLGQALG 279 (279)
Q Consensus 266 GICLGhQLLa~AlG 279 (279)
|||||||+|+.++|
T Consensus 593 GICLG~QlLa~a~G 606 (717)
T TIGR01815 593 GVCLGLQGMVEAFG 606 (717)
T ss_pred EECHHHHHHhhhhC
Confidence 99999999999997
No 31
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.65 E-value=3.7e-16 Score=156.58 Aligned_cols=87 Identities=33% Similarity=0.623 Sum_probs=74.9
Q ss_pred EEEEEEcC--chHHHHHHHHHCCCe-EEEE-cCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeec
Q 039151 193 RVIAYDFG--IKHNILRRLASYGCQ-IIVV-PSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGIC 268 (279)
Q Consensus 193 ~I~viD~G--~k~~I~r~L~~~G~~-v~vv-p~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGIC 268 (279)
+|++||+. +++|+.+.|+++|++ +.++ |++.+.+++...+||+||||||||+|.+....++.++.+..++|+||||
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIC 80 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVC 80 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEc
Confidence 48999984 589999999999996 7777 5556788887778999999999999988766777787755789999999
Q ss_pred HHHHHHHHHcC
Q 039151 269 MGHQLLGQALG 279 (279)
Q Consensus 269 LGhQLLa~AlG 279 (279)
+|||+|+.++|
T Consensus 81 lG~QlLa~a~G 91 (534)
T PRK14607 81 LGHQAIGYAFG 91 (534)
T ss_pred HHHHHHHHHcC
Confidence 99999999997
No 32
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.65 E-value=5.1e-16 Score=133.19 Aligned_cols=88 Identities=34% Similarity=0.593 Sum_probs=80.7
Q ss_pred cEEEEEEc--CchHHHHHHH-HHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151 192 YRVIAYDF--GIKHNILRRL-ASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 192 ~~I~viD~--G~k~~I~r~L-~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI 267 (279)
.+|++||. .+++|+.++| .+.||.+.|++++ .+.+++.+.+|++++||+|||+|.|.....+.|+++-.++|+|||
T Consensus 19 ~piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~~iP~fGv 98 (223)
T KOG0026|consen 19 GPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGPLVPLFGV 98 (223)
T ss_pred CCEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCCCCceeee
Confidence 36999997 5799999999 6789999999987 588999999999999999999999888888999999899999999
Q ss_pred cHHHHHHHHHcC
Q 039151 268 CMGHQLLGQALG 279 (279)
Q Consensus 268 CLGhQLLa~AlG 279 (279)
|+|.|.|..++|
T Consensus 99 CMGlQCi~e~fG 110 (223)
T KOG0026|consen 99 CMGLQCIGEAFG 110 (223)
T ss_pred ehhhhhhhhhhC
Confidence 999999999987
No 33
>PRK00758 GMP synthase subunit A; Validated
Probab=99.61 E-value=2.8e-15 Score=130.14 Aligned_cols=82 Identities=37% Similarity=0.645 Sum_probs=64.4
Q ss_pred EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCC-CeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151 193 RVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKP-DGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM 269 (279)
Q Consensus 193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~-DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL 269 (279)
+|++||+|. .+++.+.|+++|+++.+++++.+.+++. ++ ||||||||| ++.......+.+++ .++|+||||+
T Consensus 1 ~i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~l~--~~~dgivi~Gg~-~~~~~~~~~~~l~~--~~~PilGIC~ 75 (184)
T PRK00758 1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIK--AFEDGLILSGGP-DIERAGNCPEYLKE--LDVPILGICL 75 (184)
T ss_pred CEEEEECCCchHHHHHHHHHHcCCcEEEEECCCCHHHHh--hcCCEEEECCCC-ChhhccccHHHHHh--CCCCEEEEeH
Confidence 489999976 5789999999999999999887777764 45 999999999 44322222233331 4899999999
Q ss_pred HHHHHHHHcC
Q 039151 270 GHQLLGQALG 279 (279)
Q Consensus 270 GhQLLa~AlG 279 (279)
|||+|+.|+|
T Consensus 76 G~Q~L~~a~G 85 (184)
T PRK00758 76 GHQLIAKAFG 85 (184)
T ss_pred HHHHHHHhcC
Confidence 9999999987
No 34
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.59 E-value=3.9e-15 Score=148.51 Aligned_cols=87 Identities=33% Similarity=0.565 Sum_probs=72.5
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
.+|+|||||. .++|.|.|+++|+.++++|++.+.+++.+.+||||||||||.++.+.. .....+.++ .++|+||||
T Consensus 4 ~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~~~~~l~~~~~dgIIlsGGp~sv~~~~-~p~~~~~i~~~~~PvLGIC 82 (511)
T PRK00074 4 DKILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEG-APRADPEIFELGVPVLGIC 82 (511)
T ss_pred CEEEEEECCCCcHHHHHHHHHHCCCeEEEEECCCCHHHHhccCCCEEEECCCCcccccCC-CccccHHHHhCCCCEEEEC
Confidence 3799999997 567999999999999999998888888777889999999999876532 112234445 599999999
Q ss_pred HHHHHHHHHcC
Q 039151 269 MGHQLLGQALG 279 (279)
Q Consensus 269 LGhQLLa~AlG 279 (279)
+|||+|+.++|
T Consensus 83 ~G~QlLa~~lG 93 (511)
T PRK00074 83 YGMQLMAHQLG 93 (511)
T ss_pred HHHHHHHHHhC
Confidence 99999999997
No 35
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.59 E-value=3.9e-15 Score=155.89 Aligned_cols=87 Identities=30% Similarity=0.577 Sum_probs=71.3
Q ss_pred cEEEEEEc--CchHHHHHHHHHC-CCeEEEEcCC-CChhhhhc-----cCCCeEEEcCCCCCCCCChH---HHHHHHHHH
Q 039151 192 YRVIAYDF--GIKHNILRRLASY-GCQIIVVPST-WPASETLK-----LKPDGVLFSNGPGDPSAVPY---AVAIVKELL 259 (279)
Q Consensus 192 ~~I~viD~--G~k~~I~r~L~~~-G~~v~vvp~~-~~~~~i~~-----~~~DgIiLSgGPGdp~~~~~---~i~~Ir~~~ 259 (279)
+||++||+ .+++||++.|.+. |+++.|++++ .+.+++.. ..||+||||||||+|..... ..+.|+++
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~- 160 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC- 160 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh-
Confidence 79999998 5799999999998 9999999887 46666642 47999999999999975332 34444443
Q ss_pred CCCCEeeecHHHHHHHHHcC
Q 039151 260 GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 260 ~~~PILGICLGhQLLa~AlG 279 (279)
.++||||||||||+|++++|
T Consensus 161 ~~iPILGICLGhQ~i~~~~G 180 (918)
T PLN02889 161 RDIPILGVCLGHQALGYVHG 180 (918)
T ss_pred CCCcEEEEcHHHHHHHHhcC
Confidence 57999999999999999997
No 36
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.56 E-value=1.3e-14 Score=150.23 Aligned_cols=88 Identities=31% Similarity=0.466 Sum_probs=69.1
Q ss_pred ccEEEEEEcC--chHHHHHHHHHC---CCeEEEEcCCCChhhhh--ccCCCeEEEcCCCCCCCCChHHHHHHHHHH--C-
Q 039151 191 TYRVIAYDFG--IKHNILRRLASY---GCQIIVVPSTWPASETL--KLKPDGVLFSNGPGDPSAVPYAVAIVKELL--G- 260 (279)
Q Consensus 191 ~~~I~viD~G--~k~~I~r~L~~~---G~~v~vvp~~~~~~~i~--~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~- 260 (279)
.+||++||++ +++||++.|++. ++++++++++....++. ..++|+||||||||+|.+. ..+..+++++ .
T Consensus 5 ~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~-~~~~i~~~i~~~~~ 83 (742)
T TIGR01823 5 RLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNA-QDMGIISELWELAN 83 (742)
T ss_pred CceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccch-hhhHHHHHHHHhcc
Confidence 5799999998 799999999886 36788888875433332 1479999999999999743 3344555555 2
Q ss_pred --CCCEeeecHHHHHHHHHcC
Q 039151 261 --KVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 261 --~~PILGICLGhQLLa~AlG 279 (279)
++|+||||||||+|+.++|
T Consensus 84 ~~~iPvLGIClG~QlLa~a~G 104 (742)
T TIGR01823 84 LDEVPVLGICLGFQSLCLAQG 104 (742)
T ss_pred cCCCcEEEEchhhHHHHhhcC
Confidence 5999999999999999997
No 37
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.51 E-value=9.1e-14 Score=126.29 Aligned_cols=87 Identities=18% Similarity=0.283 Sum_probs=68.7
Q ss_pred ccEEEEEEc---CchHHHHHHHHHCCCeEEEEcCCCC---hhhhhccCCCeEEEcCCCCCCCCCh----HHHHHHHHHH-
Q 039151 191 TYRVIAYDF---GIKHNILRRLASYGCQIIVVPSTWP---ASETLKLKPDGVLFSNGPGDPSAVP----YAVAIVKELL- 259 (279)
Q Consensus 191 ~~~I~viD~---G~k~~I~r~L~~~G~~v~vvp~~~~---~~~i~~~~~DgIiLSgGPGdp~~~~----~~i~~Ir~~~- 259 (279)
.+||++|.. +...++.+.|+++|.++.++..... ++++ .++|++||+|||+++.+.. .++++|++++
T Consensus 7 ~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l--~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~ 84 (239)
T PRK06490 7 KRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTL--EDHAGAVIFGGPMSANDPDDFIRREIDWISVPLK 84 (239)
T ss_pred CceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcc--cccCEEEEECCCCCCCCCchHHHHHHHHHHHHHH
Confidence 478888843 4578899999999999998854311 2233 4799999999999987653 3456777777
Q ss_pred CCCCEeeecHHHHHHHHHcC
Q 039151 260 GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 260 ~~~PILGICLGhQLLa~AlG 279 (279)
.++|+||||+|||+||.|+|
T Consensus 85 ~~~PvLGIC~G~Qlla~alG 104 (239)
T PRK06490 85 ENKPFLGICLGAQMLARHLG 104 (239)
T ss_pred CCCCEEEECHhHHHHHHHcC
Confidence 68999999999999999997
No 38
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.48 E-value=1.1e-13 Score=121.89 Aligned_cols=81 Identities=25% Similarity=0.428 Sum_probs=62.6
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHH---HHHHHHH-CCCCEe
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAV---AIVKELL-GKVPVF 265 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i---~~Ir~~~-~~~PIL 265 (279)
|+|++||||. .+|+.++|++.|+++.++.. .+++. ++|+||| +|||.|.+....+ .+++.+. .++|+|
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~---~~~~~--~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~~~~~Pil 74 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRD---PDVIL--AADKLFL-PGVGTAQAAMDQLRERELIDLIKACTQPVL 74 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECC---HHHhC--CCCEEEE-CCCCchHHHHHHHHHcChHHHHHHcCCCEE
Confidence 5799999976 68999999999999999863 34553 6899998 8999887542221 2233333 489999
Q ss_pred eecHHHHHHHHHc
Q 039151 266 GICMGHQLLGQAL 278 (279)
Q Consensus 266 GICLGhQLLa~Al 278 (279)
|||+|||+|+.++
T Consensus 75 GIClG~Qll~~~~ 87 (196)
T PRK13170 75 GICLGMQLLGERS 87 (196)
T ss_pred EECHHHHHHhhhc
Confidence 9999999999986
No 39
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.45 E-value=2.8e-13 Score=118.58 Aligned_cols=79 Identities=24% Similarity=0.432 Sum_probs=62.8
Q ss_pred chHHHHHHHHHCCCeEEEEcCCCChhhhhc--cCCCeEEEcCCCCCCCC-----------------ChHHHHHHHHHH-C
Q 039151 201 IKHNILRRLASYGCQIIVVPSTWPASETLK--LKPDGVLFSNGPGDPSA-----------------VPYAVAIVKELL-G 260 (279)
Q Consensus 201 ~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~--~~~DgIiLSgGPGdp~~-----------------~~~~i~~Ir~~~-~ 260 (279)
+.++++++|+..|+.+.++|+..+.+++.. .++|||||+|||+...+ ...+.+.+++++ .
T Consensus 20 ~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 99 (189)
T cd01745 20 LNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALER 99 (189)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHC
Confidence 467899999999999999998766544322 47999999999964211 123467888888 6
Q ss_pred CCCEeeecHHHHHHHHHcC
Q 039151 261 KVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 261 ~~PILGICLGhQLLa~AlG 279 (279)
++|+||||+|||+|+.++|
T Consensus 100 ~~PilgiC~G~Q~l~~~~G 118 (189)
T cd01745 100 GKPILGICRGMQLLNVALG 118 (189)
T ss_pred CCCEEEEcchHHHHHHHhC
Confidence 8999999999999999997
No 40
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.45 E-value=5.6e-13 Score=120.79 Aligned_cols=88 Identities=24% Similarity=0.351 Sum_probs=68.0
Q ss_pred cEEEEEEcCc---hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-C
Q 039151 192 YRVIAYDFGI---KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-G 260 (279)
Q Consensus 192 ~~I~viD~G~---k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~ 260 (279)
++|+||..-- ..++.++|+++|.++++++.+.. .......++|+|||+|||.++.+. ..++++|++++ .
T Consensus 3 ~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~ 82 (234)
T PRK07053 3 KTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAA 82 (234)
T ss_pred ceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHC
Confidence 4788887632 46788999999999999876432 111112479999999999887652 34678888888 6
Q ss_pred CCCEeeecHHHHHHHHHcC
Q 039151 261 KVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 261 ~~PILGICLGhQLLa~AlG 279 (279)
++|+||||+|||+|+.|+|
T Consensus 83 ~~PvlGIC~G~Qlla~alG 101 (234)
T PRK07053 83 GLPTLGICLGAQLIARALG 101 (234)
T ss_pred CCCEEEECccHHHHHHHcC
Confidence 9999999999999999997
No 41
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.44 E-value=3.8e-13 Score=118.73 Aligned_cols=78 Identities=23% Similarity=0.426 Sum_probs=61.8
Q ss_pred EEEEEcCch--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChH------HHHHHHHH-H-CCCC
Q 039151 194 VIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPY------AVAIVKEL-L-GKVP 263 (279)
Q Consensus 194 I~viD~G~k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~------~i~~Ir~~-~-~~~P 263 (279)
|++||||++ +++.+.|++.|+++.+++. .+++ .++|+||| +|||++.+... ..+.+++. + .++|
T Consensus 2 i~iid~g~~n~~~v~~~l~~~g~~~~~~~~---~~~l--~~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~p 75 (201)
T PRK13152 2 IALIDYKAGNLNSVAKAFEKIGAINFIAKN---PKDL--QKADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQKKP 75 (201)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCeEEEECC---HHHH--cCCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCCCc
Confidence 899999997 9999999999999888764 3455 36999999 89999865321 23445544 4 5899
Q ss_pred EeeecHHHHHHHHH
Q 039151 264 VFGICMGHQLLGQA 277 (279)
Q Consensus 264 ILGICLGhQLLa~A 277 (279)
+||||+|||+|+.+
T Consensus 76 vlGiC~G~Q~l~~~ 89 (201)
T PRK13152 76 ILGICLGMQLFLER 89 (201)
T ss_pred EEEECHhHHHHhhc
Confidence 99999999999986
No 42
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.38 E-value=9.6e-13 Score=115.47 Aligned_cols=78 Identities=26% Similarity=0.518 Sum_probs=62.8
Q ss_pred EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CCCCE
Q 039151 194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GKVPV 264 (279)
Q Consensus 194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~~PI 264 (279)
|+|||||+ .+++.+.|+++|+++++++.. +++ .++|+||| +||+++.+. ....+.++++. .++|+
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~---~~l--~~~d~iii-pG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pi 74 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDP---EEI--LSADKLIL-PGVGAFGDAMANLRERGLIEALKEAIASGKPF 74 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcCh---HHh--ccCCEEEE-CCCCcHHHHHHHHHHcChHHHHHHHHHCCCcE
Confidence 68999987 788999999999999999742 344 36899999 567766432 13467888887 69999
Q ss_pred eeecHHHHHHHHH
Q 039151 265 FGICMGHQLLGQA 277 (279)
Q Consensus 265 LGICLGhQLLa~A 277 (279)
||||+|||+|+.+
T Consensus 75 lGiC~G~q~l~~~ 87 (198)
T cd01748 75 LGICLGMQLLFES 87 (198)
T ss_pred EEECHHHHHhccc
Confidence 9999999999987
No 43
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.38 E-value=1.3e-12 Score=115.39 Aligned_cols=79 Identities=29% Similarity=0.492 Sum_probs=64.3
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh------HHHHHHHHHH-CCC
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP------YAVAIVKELL-GKV 262 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~Ir~~~-~~~ 262 (279)
++|+|||+|+ .+|+.++|++.|+++.+.. +++++. +.|+||| +|.|...++. ..++.|++.+ .++
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~---d~~~i~--~AD~liL-PGVGaf~~am~~L~~~gl~~~i~~~~~~~k 75 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSR---DPEEIL--KADKLIL-PGVGAFGAAMANLRERGLIEAIKEAVESGK 75 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEec---CHHHHh--hCCEEEe-cCCCCHHHHHHHHHhcchHHHHHHHHhcCC
Confidence 5899999987 6899999999999998864 456664 7899999 7888765432 3567788777 579
Q ss_pred CEeeecHHHHHHHH
Q 039151 263 PVFGICMGHQLLGQ 276 (279)
Q Consensus 263 PILGICLGhQLLa~ 276 (279)
|+||||+|||||..
T Consensus 76 P~LGIClGMQlLfe 89 (204)
T COG0118 76 PFLGICLGMQLLFE 89 (204)
T ss_pred CEEEEeHhHHhhhh
Confidence 99999999999975
No 44
>PRK05665 amidotransferase; Provisional
Probab=99.36 E-value=3.5e-12 Score=116.11 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=58.3
Q ss_pred cEEEEEEcCc-----------hHH-HHHHHHHCCCe--EEEEcCCC-C-hhhhhccCCCeEEEcCCCCCCCCChH----H
Q 039151 192 YRVIAYDFGI-----------KHN-ILRRLASYGCQ--IIVVPSTW-P-ASETLKLKPDGVLFSNGPGDPSAVPY----A 251 (279)
Q Consensus 192 ~~I~viD~G~-----------k~~-I~r~L~~~G~~--v~vvp~~~-~-~~~i~~~~~DgIiLSgGPGdp~~~~~----~ 251 (279)
+||+|+.+|. ... +.+.|.+.+.+ +.++.... . +.+ ..++||+||+|||.++.+... +
T Consensus 3 mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~--~~~~dgiiitGs~~~v~~~~pwi~~l 80 (240)
T PRK05665 3 LRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPAD--DEKFDAYLVTGSKADSFGTDPWIQTL 80 (240)
T ss_pred eEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCC--cccCCEEEECCCCCCccccchHHHHH
Confidence 4677776653 122 44555666644 44443211 1 112 247999999999999876533 4
Q ss_pred HHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151 252 VAIVKELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 252 i~~Ir~~~-~~~PILGICLGhQLLa~AlG 279 (279)
.+.|++++ .++|+||||+|||+||.|+|
T Consensus 81 ~~~i~~~~~~~~PilGIC~GhQlla~AlG 109 (240)
T PRK05665 81 KTYLLKLYERGDKLLGVCFGHQLLALLLG 109 (240)
T ss_pred HHHHHHHHhcCCCEEEEeHHHHHHHHHhC
Confidence 56677777 68999999999999999998
No 45
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.36 E-value=2.4e-12 Score=114.94 Aligned_cols=81 Identities=22% Similarity=0.376 Sum_probs=63.5
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh------HHHHHHHHHH-CCC
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP------YAVAIVKELL-GKV 262 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~Ir~~~-~~~ 262 (279)
++|.|||+|. -.++.++|+++|+++.+++. .+++. ++|+||+ +|||+|.... ...+.|++++ .++
T Consensus 2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~---~~~l~--~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~~~~~~ 75 (210)
T CHL00188 2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINS---ESELA--QVHALVL-PGVGSFDLAMKKLEKKGLITPIKKWIAEGN 75 (210)
T ss_pred cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcC---HHHhh--hCCEEEE-CCCCchHHHHHHHHHCCHHHHHHHHHHcCC
Confidence 5799999975 58899999999999999864 24442 6899885 8999875321 2345677777 689
Q ss_pred CEeeecHHHHHHHHHc
Q 039151 263 PVFGICMGHQLLGQAL 278 (279)
Q Consensus 263 PILGICLGhQLLa~Al 278 (279)
|+||||+|||+|+...
T Consensus 76 pvlGIClG~Qll~~~~ 91 (210)
T CHL00188 76 PFIGICLGLHLLFETS 91 (210)
T ss_pred CEEEECHHHHHHhhcc
Confidence 9999999999999764
No 46
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.35 E-value=2.5e-12 Score=113.10 Aligned_cols=78 Identities=28% Similarity=0.452 Sum_probs=61.5
Q ss_pred EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CCCCE
Q 039151 194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GKVPV 264 (279)
Q Consensus 194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~~PI 264 (279)
|++||||. ..++.++|+++|++++++. +.+++ .++|+||+ +|+|++... ....+.++++. .++|+
T Consensus 2 i~vid~g~gn~~~~~~~l~~~g~~v~~~~---~~~~l--~~~d~lil-pG~g~~~~~~~~l~~~~~~~~i~~~~~~~~Pv 75 (199)
T PRK13181 2 IAIIDYGAGNLRSVANALKRLGVEAVVSS---DPEEI--AGADKVIL-PGVGAFGQAMRSLRESGLDEALKEHVEKKQPV 75 (199)
T ss_pred EEEEeCCCChHHHHHHHHHHCCCcEEEEc---ChHHh--ccCCEEEE-CCCCCHHHHHHHHHHCChHHHHHHHHHCCCCE
Confidence 89999987 6889999999999999884 24555 36999987 667776421 12356677777 68999
Q ss_pred eeecHHHHHHHHH
Q 039151 265 FGICMGHQLLGQA 277 (279)
Q Consensus 265 LGICLGhQLLa~A 277 (279)
||||+|||+|+.+
T Consensus 76 lGiC~G~Qll~~~ 88 (199)
T PRK13181 76 LGICLGMQLLFES 88 (199)
T ss_pred EEECHhHHHhhhh
Confidence 9999999999998
No 47
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.33 E-value=8.3e-12 Score=108.23 Aligned_cols=87 Identities=28% Similarity=0.354 Sum_probs=64.7
Q ss_pred EEEEEEcCc---hHHHHHHHHHCC---CeEEEEcCCCChhhhhccCCCeEEEcCCCCCC-CCC----hHHHHHHHHHH-C
Q 039151 193 RVIAYDFGI---KHNILRRLASYG---CQIIVVPSTWPASETLKLKPDGVLFSNGPGDP-SAV----PYAVAIVKELL-G 260 (279)
Q Consensus 193 ~I~viD~G~---k~~I~r~L~~~G---~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp-~~~----~~~i~~Ir~~~-~ 260 (279)
||+++.... ..++.++|+++| .++.+++...........++|||||+|||.++ .+. ....+.+++++ .
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAA 80 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHC
Confidence 466666644 357888899988 68888876543211112479999999999988 322 34667788877 6
Q ss_pred CCCEeeecHHHHHHHHHcC
Q 039151 261 KVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 261 ~~PILGICLGhQLLa~AlG 279 (279)
++|+||||+|||+|+.++|
T Consensus 81 ~~pilgiC~G~q~l~~~lG 99 (188)
T cd01741 81 GKPVLGICLGHQLLARALG 99 (188)
T ss_pred CCCEEEECccHHHHHHHhC
Confidence 8999999999999999987
No 48
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.32 E-value=4.7e-12 Score=111.77 Aligned_cols=79 Identities=27% Similarity=0.535 Sum_probs=61.9
Q ss_pred EEEEEEcCch--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CCCC
Q 039151 193 RVIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GKVP 263 (279)
Q Consensus 193 ~I~viD~G~k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~~P 263 (279)
+|+++|||.. .++.|.|+++|+++.++.. .+++ .++|+|||+ |++.+.+. ....+.|++++ .++|
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~---~~~l--~~~d~iiip-G~~~~~~~~~~~~~~~~~~~i~~~~~~~~p 74 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSD---PEEI--LAADGVILP-GVGAFPDAMANLRERGLDEVIKEAVASGKP 74 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECC---HHHh--ccCCEEEEC-CCCchHHHHHHHHHcChHHHHHHHHHCCCc
Confidence 4899999985 7899999999999999863 3454 379999995 44544321 13467788877 6899
Q ss_pred EeeecHHHHHHHHH
Q 039151 264 VFGICMGHQLLGQA 277 (279)
Q Consensus 264 ILGICLGhQLLa~A 277 (279)
+||||+|||+|+.+
T Consensus 75 vlGIC~G~Qll~~~ 88 (205)
T PRK13141 75 LLGICLGMQLLFES 88 (205)
T ss_pred EEEECHHHHHhhhc
Confidence 99999999999986
No 49
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.32 E-value=4.3e-12 Score=115.04 Aligned_cols=74 Identities=24% Similarity=0.300 Sum_probs=56.1
Q ss_pred HHHHHHHHCCCeEEEEcCCCC--hhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCEeeecHHHHHHHH
Q 039151 204 NILRRLASYGCQIIVVPSTWP--ASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPVFGICMGHQLLGQ 276 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~--~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PILGICLGhQLLa~ 276 (279)
.+.+.|...|.++.++..... ..++ .++|||||+|||.+..+. ....++|++++ .++|+||||+|||+|+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~ 103 (237)
T PRK09065 26 WIRVALGLAEQPVVVVRVFAGEPLPAP--DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAH 103 (237)
T ss_pred HHHHHhccCCceEEEEeccCCCCCCCh--hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHH
Confidence 344556677898888765431 2233 479999999999987653 23467788877 69999999999999999
Q ss_pred HcC
Q 039151 277 ALG 279 (279)
Q Consensus 277 AlG 279 (279)
|+|
T Consensus 104 alG 106 (237)
T PRK09065 104 ALG 106 (237)
T ss_pred HcC
Confidence 998
No 50
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.32 E-value=8.2e-12 Score=110.21 Aligned_cols=80 Identities=24% Similarity=0.506 Sum_probs=62.1
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCE
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPV 264 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PI 264 (279)
+||+|||+|. ..++.++|+++|+++.+++. .+++ .++|+|+|+| ++++.+. ....+.+++++ .++|+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~---~~~~--~~~d~iii~G-~~~~~~~~~~~~~~~~~i~~~~~~~~Pi 74 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSD---PEEI--LDADGIVLPG-VGAFGAAMENLSPLRDVILEAARSGKPF 74 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECC---HHHH--ccCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 5899999976 46899999999999999863 3344 3799999965 4444321 23566778777 68999
Q ss_pred eeecHHHHHHHHH
Q 039151 265 FGICMGHQLLGQA 277 (279)
Q Consensus 265 LGICLGhQLLa~A 277 (279)
||||+|||+|+.+
T Consensus 75 lgIC~G~q~l~~~ 87 (200)
T PRK13143 75 LGICLGMQLLFES 87 (200)
T ss_pred EEECHHHHHHhhh
Confidence 9999999999985
No 51
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.31 E-value=1.2e-11 Score=112.05 Aligned_cols=87 Identities=22% Similarity=0.299 Sum_probs=63.5
Q ss_pred cEEEEEEc-C--chHHHHHHHHHCCCeEEEEcCCCChhhhh--ccCCCeEEEcCCCCCCCCC---------hHHHHHHHH
Q 039151 192 YRVIAYDF-G--IKHNILRRLASYGCQIIVVPSTWPASETL--KLKPDGVLFSNGPGDPSAV---------PYAVAIVKE 257 (279)
Q Consensus 192 ~~I~viD~-G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~--~~~~DgIiLSgGPGdp~~~---------~~~i~~Ir~ 257 (279)
|||++|-. . -...+...++++|.++.++..... +.+. ..++|+|||+|||+++.+. ..+.+.|++
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g-~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~ 79 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAG-EALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQ 79 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCC-CCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHH
Confidence 46666653 2 245567788889999988754321 1121 2479999999999986531 245678888
Q ss_pred HH-CCCCEeeecHHHHHHHHHcC
Q 039151 258 LL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 258 ~~-~~~PILGICLGhQLLa~AlG 279 (279)
++ .++|+||||+|||+|+.|+|
T Consensus 80 ~~~~~~PvlGIC~G~Qlla~alG 102 (235)
T PRK08250 80 AIKAGKAVIGVCLGAQLIGEALG 102 (235)
T ss_pred HHHcCCCEEEEChhHHHHHHHhC
Confidence 88 69999999999999999997
No 52
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.30 E-value=6.4e-12 Score=110.99 Aligned_cols=77 Identities=21% Similarity=0.419 Sum_probs=59.9
Q ss_pred EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChH------HHHHHHHHHCCCCEe
Q 039151 194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPY------AVAIVKELLGKVPVF 265 (279)
Q Consensus 194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~------~i~~Ir~~~~~~PIL 265 (279)
|+|||||. -+|+.++|++.|+++.++.. .+++. ++|+||| +|+|++.+... ..+.|++ ..++|+|
T Consensus 2 i~iidyg~gN~~s~~~al~~~g~~~~~v~~---~~~l~--~~D~lIl-PG~g~~~~~~~~L~~~gl~~~i~~-~~g~Pvl 74 (192)
T PRK13142 2 IVIVDYGLGNISNVKRAIEHLGYEVVVSNT---SKIID--QAETIIL-PGVGHFKDAMSEIKRLNLNAILAK-NTDKKMI 74 (192)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEEEEeC---HHHhc--cCCEEEE-CCCCCHHHHHHHHHHCCcHHHHHH-hCCCeEE
Confidence 88999987 68999999999999998853 45663 6999966 78888764321 2444555 3589999
Q ss_pred eecHHHHHHHHH
Q 039151 266 GICMGHQLLGQA 277 (279)
Q Consensus 266 GICLGhQLLa~A 277 (279)
|||+|||||+..
T Consensus 75 GIClGmQlL~~~ 86 (192)
T PRK13142 75 GICLGMQLMYEH 86 (192)
T ss_pred EECHHHHHHhhh
Confidence 999999999875
No 53
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.28 E-value=1.7e-11 Score=111.62 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=55.8
Q ss_pred EEEEEcCc-----hHHHHHHHHHCCCe---EEEEcCCCC---hhhhhccCCCeEEEcCCCCCCCCC-----hH---H---
Q 039151 194 VIAYDFGI-----KHNILRRLASYGCQ---IIVVPSTWP---ASETLKLKPDGVLFSNGPGDPSAV-----PY---A--- 251 (279)
Q Consensus 194 I~viD~G~-----k~~I~r~L~~~G~~---v~vvp~~~~---~~~i~~~~~DgIiLSgGPGdp~~~-----~~---~--- 251 (279)
|+++..+. ...+.+.|++.|.. +.++..+.. ..++ .++|||||+|||+++.+. ++ .
T Consensus 4 ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~ 81 (242)
T PRK07567 4 FLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDL--DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAE 81 (242)
T ss_pred EEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCH--hhccEEEEcCCCCcCCCCCCccchHHHHHHHH
Confidence 55555432 24566777777754 666543321 1122 479999999999998764 21 1
Q ss_pred -HHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151 252 -VAIVKELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 252 -i~~Ir~~~-~~~PILGICLGhQLLa~AlG 279 (279)
.+.++.++ .++|+||||+|||+||.|+|
T Consensus 82 i~~~i~~~~~~~~PvLGIC~G~Qlla~a~G 111 (242)
T PRK07567 82 LSGLLDEVVARDFPFLGACYGVGTLGHHQG 111 (242)
T ss_pred HHHHHHHHHhcCCCEEEEchhHHHHHHHcC
Confidence 23344444 68999999999999999997
No 54
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.26 E-value=1.6e-11 Score=109.65 Aligned_cols=79 Identities=19% Similarity=0.421 Sum_probs=61.9
Q ss_pred EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh------HHHHHHHHHH-CCCCE
Q 039151 194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP------YAVAIVKELL-GKVPV 264 (279)
Q Consensus 194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~Ir~~~-~~~PI 264 (279)
|+|||||+ -+|+.++|+..++++..+. +.+++. ++|+||+ +|+|++...- ...+.|++++ .++|+
T Consensus 2 i~iidyg~gNl~s~~~al~~~~~~~~~~~---~~~~l~--~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pi 75 (210)
T PRK14004 2 IAILDYGMGNIHSCLKAVSLYTKDFVFTS---DPETIE--NSKALIL-PGDGHFDKAMENLNSTGLRSTIDKHVESGKPL 75 (210)
T ss_pred EEEEECCCchHHHHHHHHHHcCCeEEEEC---CHHHhc--cCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHcCCCE
Confidence 89999987 6889999999999888763 345553 7899885 7888765421 3455667666 79999
Q ss_pred eeecHHHHHHHHHc
Q 039151 265 FGICMGHQLLGQAL 278 (279)
Q Consensus 265 LGICLGhQLLa~Al 278 (279)
||||+|||+|+.++
T Consensus 76 lGiC~G~Q~l~~~~ 89 (210)
T PRK14004 76 FGICIGFQILFESS 89 (210)
T ss_pred EEECHhHHHHHHhc
Confidence 99999999999875
No 55
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.26 E-value=1.6e-11 Score=108.04 Aligned_cols=78 Identities=27% Similarity=0.468 Sum_probs=59.4
Q ss_pred EEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh----HH-HHHH-HHHH-CCCCE
Q 039151 194 VIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP----YA-VAIV-KELL-GKVPV 264 (279)
Q Consensus 194 I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~----~~-i~~I-r~~~-~~~PI 264 (279)
|+|+|+|. ...+.+.|+++|+++++++.+ +++ .++|+||| +||+++.+.. .. .+.+ ++++ .++|+
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~---~~l--~~~d~lii-~G~~~~~~~~~~l~~~~~~~l~~~~~~~~~pv 74 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDS---KEA--ELADKLIL-PGVGAFGAAMARLRENGLDLFVELVVRLGKPV 74 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCH---HHh--ccCCEEEE-CCCCCHHHHHHHHHHcCcHHHHHHHHhCCCCE
Confidence 68999986 577999999999999999853 333 37999999 6777764321 11 2344 6666 68999
Q ss_pred eeecHHHHHHHHH
Q 039151 265 FGICMGHQLLGQA 277 (279)
Q Consensus 265 LGICLGhQLLa~A 277 (279)
||||+|||+|+.+
T Consensus 75 lGiC~G~Qll~~~ 87 (196)
T TIGR01855 75 LGICLGMQLLFER 87 (196)
T ss_pred EEECHHHHHhhhc
Confidence 9999999999987
No 56
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.25 E-value=2.4e-11 Score=111.40 Aligned_cols=77 Identities=26% Similarity=0.455 Sum_probs=58.3
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCC----hhhhhccCCCeEEEcCCCCCCC--------C--------ChHHHHHHHHHH-C
Q 039151 202 KHNILRRLASYGCQIIVVPSTWP----ASETLKLKPDGVLFSNGPGDPS--------A--------VPYAVAIVKELL-G 260 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~----~~~i~~~~~DgIiLSgGPGdp~--------~--------~~~~i~~Ir~~~-~ 260 (279)
...+++++.+.|..+.++|.... .+++. ..+|||||+|||.|.. . ...++++++.++ .
T Consensus 28 ~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l-~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~ 106 (254)
T PRK11366 28 QEKYLNAIIHAGGLPIALPHALAEPSLLEQLL-PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALER 106 (254)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCCHHHHHHHH-HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHC
Confidence 45578888889998888885432 22332 3699999999987531 1 124567888888 6
Q ss_pred CCCEeeecHHHHHHHHHcC
Q 039151 261 KVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 261 ~~PILGICLGhQLLa~AlG 279 (279)
++|+||||+|||+|+.|+|
T Consensus 107 ~~PILGICrG~Qllnva~G 125 (254)
T PRK11366 107 RIPIFAICRGLQELVVATG 125 (254)
T ss_pred CCCEEEECHhHHHHHHHhC
Confidence 9999999999999999997
No 57
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.25 E-value=2.8e-11 Score=106.20 Aligned_cols=83 Identities=20% Similarity=0.400 Sum_probs=65.2
Q ss_pred cEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCEe
Q 039151 192 YRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPVF 265 (279)
Q Consensus 192 ~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PIL 265 (279)
|+|.++++ |...+.++.|+..|+++..++. .+++ .++|||||+|||++..+. ....+.+|++. .++|+|
T Consensus 2 m~~~i~~~~g~~~~~~~~l~~~g~~~~~~~~---~~~l--~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~Pil 76 (189)
T PRK13525 2 MKIGVLALQGAVREHLAALEALGAEAVEVRR---PEDL--DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVF 76 (189)
T ss_pred CEEEEEEcccCHHHHHHHHHHCCCEEEEeCC---hhHh--ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEE
Confidence 57899998 5666778999999999988864 3344 369999999998754321 22357788888 699999
Q ss_pred eecHHHHHHHHHcC
Q 039151 266 GICMGHQLLGQALG 279 (279)
Q Consensus 266 GICLGhQLLa~AlG 279 (279)
|||+|+|+|+.++|
T Consensus 77 GIC~G~QlL~~~~g 90 (189)
T PRK13525 77 GTCAGMILLAKEIE 90 (189)
T ss_pred EECHHHHHHHhhcc
Confidence 99999999999875
No 58
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.22 E-value=7.4e-12 Score=121.22 Aligned_cols=85 Identities=32% Similarity=0.549 Sum_probs=69.4
Q ss_pred EEEEEEcCch--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHH-HHH-CCCCEeeec
Q 039151 193 RVIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVK-ELL-GKVPVFGIC 268 (279)
Q Consensus 193 ~I~viD~G~k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir-~~~-~~~PILGIC 268 (279)
+|+++|||.. +-|-|.+++....-+++|.++++..|.+..|.||||||||-+.++.+ ...+. .++ -++|+||||
T Consensus 18 ~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~d--AP~~dp~if~~~vpvLGIC 95 (552)
T KOG1622|consen 18 TILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAED--APSFDPAIFELGVPVLGIC 95 (552)
T ss_pred eEEEEeccchhhHHHHHHHHHHhhhhhhccCCChhhhhhcCCceEEEEeCCCCccccCc--CCCCChhHhccCCcceeeh
Confidence 7999999984 55889999999999999999999999888999999999999865421 01111 223 389999999
Q ss_pred HHHHHHHHHcC
Q 039151 269 MGHQLLGQALG 279 (279)
Q Consensus 269 LGhQLLa~AlG 279 (279)
+|||+|+.-+|
T Consensus 96 YGmQ~i~~~~G 106 (552)
T KOG1622|consen 96 YGMQLINKLNG 106 (552)
T ss_pred hHHHHHHHHhC
Confidence 99999999876
No 59
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.21 E-value=2.2e-11 Score=121.36 Aligned_cols=89 Identities=18% Similarity=0.267 Sum_probs=68.2
Q ss_pred CccEEEEEE-c-C---chHHHHHHHHHCCC--eEEEEcCCCChhhhhc------cCCCeEEEcCCCCCCCCChHHHHHHH
Q 039151 190 KTYRVIAYD-F-G---IKHNILRRLASYGC--QIIVVPSTWPASETLK------LKPDGVLFSNGPGDPSAVPYAVAIVK 256 (279)
Q Consensus 190 ~~~~I~viD-~-G---~k~~I~r~L~~~G~--~v~vvp~~~~~~~i~~------~~~DgIiLSgGPGdp~~~~~~i~~Ir 256 (279)
...+|+++- | . ...+|.++|..+|+ .+.+.+...+.+++.. .++|||+|+||||++.. ...++.++
T Consensus 288 ~~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~-~g~i~ai~ 366 (525)
T TIGR00337 288 HEVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERGV-EGKILAIK 366 (525)
T ss_pred CCcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChhh-cChHHHHH
Confidence 357888873 3 1 25789999999997 5555555455555432 24999999999999874 45677888
Q ss_pred HHH-CCCCEeeecHHHHHHHHHcC
Q 039151 257 ELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 257 ~~~-~~~PILGICLGhQLLa~AlG 279 (279)
.+. .++|+||||+|||+|+.++|
T Consensus 367 ~a~e~~iP~LGIClG~Qll~i~~g 390 (525)
T TIGR00337 367 YARENNIPFLGICLGMQLAVIEFA 390 (525)
T ss_pred HHHHcCCCEEEEcHHHHHHHHHHH
Confidence 888 79999999999999999876
No 60
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.21 E-value=3.2e-11 Score=107.37 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=57.8
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCC--eEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChH------HHH-HHHHHH-
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGC--QIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPY------AVA-IVKELL- 259 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~--~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~------~i~-~Ir~~~- 259 (279)
+||+|||||. .+++.++|++.|+ ++.++. +.+++ .++|+|||+|+ +...+... ..+ .++.+.
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~---~~~~l--~~~d~lIlpG~-~~~~~~~~~l~~~~~~~~~~~~~~~ 75 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTA---DPDAV--AAADRVVLPGV-GAFADCMRGLRAVGLGEAVIEAVLA 75 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEEC---CHHHh--cCCCEEEECCC-CcHHHHHHHHHHCCcHHHHHHHHHh
Confidence 6899999987 7899999999999 555543 45665 48999999654 43322111 122 344444
Q ss_pred CCCCEeeecHHHHHHHHH
Q 039151 260 GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 260 ~~~PILGICLGhQLLa~A 277 (279)
.++|+||||+|||+|+.+
T Consensus 76 ~~~PvlGiC~G~q~l~~~ 93 (209)
T PRK13146 76 AGRPFLGICVGMQLLFER 93 (209)
T ss_pred CCCcEEEECHHHHHHhhc
Confidence 689999999999999987
No 61
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.21 E-value=4.8e-11 Score=105.13 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=58.1
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC----ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA----VPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~----~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
..+.+.|+++|.+++++..+. .+++ .++|+|||+|||+++.+ .....+.|++++ .++|+||||+|||+|+.+
T Consensus 17 ~~~~~~l~~~g~~~~~~~~~~-~~~l--~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~ 93 (200)
T PRK13527 17 DALKRALDELGIDGEVVEVRR-PGDL--PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE 93 (200)
T ss_pred HHHHHHHHhcCCCeEEEEeCC-hHHh--ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 467788899999888877643 3444 37999999999987642 123578888888 689999999999999999
Q ss_pred cC
Q 039151 278 LG 279 (279)
Q Consensus 278 lG 279 (279)
+|
T Consensus 94 ~g 95 (200)
T PRK13527 94 VG 95 (200)
T ss_pred hc
Confidence 75
No 62
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=8e-11 Score=116.05 Aligned_cols=88 Identities=30% Similarity=0.590 Sum_probs=65.4
Q ss_pred ccEEEEEEc--CchHHHHHHHHHC-CCeEEE-EcCCCChhh----hhc-cCCCeEEEcCCCCCCCCChHHHHHHHHHH--
Q 039151 191 TYRVIAYDF--GIKHNILRRLASY-GCQIIV-VPSTWPASE----TLK-LKPDGVLFSNGPGDPSAVPYAVAIVKELL-- 259 (279)
Q Consensus 191 ~~~I~viD~--G~k~~I~r~L~~~-G~~v~v-vp~~~~~~~----i~~-~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-- 259 (279)
..|+++||+ ..+.|+++.|.+. |...++ +.++...++ +.+ -.+|+||+++|||+| .+...+..+.+++
T Consensus 14 rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P-~~a~d~gI~~rl~~~ 92 (767)
T KOG1224|consen 14 RLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSP-MCAADIGICLRLLLE 92 (767)
T ss_pred heeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCC-CcHHHHHHHHHHHHh
Confidence 479999998 5689999999764 554444 444443333 221 249999999999999 4555666665555
Q ss_pred -CCCCEeeecHHHHHHHHHcC
Q 039151 260 -GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 260 -~~~PILGICLGhQLLa~AlG 279 (279)
+.+||||||||||.|+++.|
T Consensus 93 ~~~iPilGICLGfQal~l~hG 113 (767)
T KOG1224|consen 93 CRDIPILGICLGFQALGLVHG 113 (767)
T ss_pred cCCCceeeeehhhHhHhhhcc
Confidence 57999999999999999876
No 63
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.17 E-value=3.4e-11 Score=107.88 Aligned_cols=78 Identities=27% Similarity=0.520 Sum_probs=51.4
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChhhhhc--cCCCeEEEcCCCCC--CC-------C-C--------hHHHHHHHHHH-C
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPASETLK--LKPDGVLFSNGPGD--PS-------A-V--------PYAVAIVKELL-G 260 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~~i~~--~~~DgIiLSgGPGd--p~-------~-~--------~~~i~~Ir~~~-~ 260 (279)
..++++++.+.|+.+.++|+..+.+++.. ...|||||+||+-| |. . . ..++.+++.++ .
T Consensus 26 ~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~ 105 (217)
T PF07722_consen 26 AASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGR 105 (217)
T ss_dssp EHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCT
T ss_pred hHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999865544332 47999999999832 21 1 1 12455666666 6
Q ss_pred CCCEeeecHHHHHHHHHcC
Q 039151 261 KVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 261 ~~PILGICLGhQLLa~AlG 279 (279)
++||||||+|||+|+.++|
T Consensus 106 ~~PilGICrG~Q~lnv~~G 124 (217)
T PF07722_consen 106 GKPILGICRGMQLLNVAFG 124 (217)
T ss_dssp T--EEEETHHHHHHHHHCC
T ss_pred CCCEEEEcHHHHHHHHHhC
Confidence 9999999999999999987
No 64
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.14 E-value=1.6e-10 Score=116.05 Aligned_cols=81 Identities=25% Similarity=0.455 Sum_probs=64.9
Q ss_pred ccEEEEEEcCch--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CC
Q 039151 191 TYRVIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GK 261 (279)
Q Consensus 191 ~~~I~viD~G~k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~ 261 (279)
..+|++||||+. +++.++|+++|+++.+++. .+++ .++|+||| +|+|++... ..+.+.|++++ .+
T Consensus 6 ~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~---~~~l--~~~D~lIl-pG~gs~~~~m~~L~~~gl~~~i~~~i~~g 79 (538)
T PLN02617 6 DSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQT---PEDI--LNADRLIF-PGVGAFGSAMDVLNNRGMAEALREYIQND 79 (538)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHCCCeEEEECC---hhhh--ccCCEEEE-CCCCCHHHHHHHHHHcCHHHHHHHHHHcC
Confidence 468999999885 8999999999999988863 3455 37999999 667776432 12456788877 68
Q ss_pred CCEeeecHHHHHHHHH
Q 039151 262 VPVFGICMGHQLLGQA 277 (279)
Q Consensus 262 ~PILGICLGhQLLa~A 277 (279)
+|+||||+|||||+.+
T Consensus 80 ~PvLGIC~G~QlLa~~ 95 (538)
T PLN02617 80 RPFLGICLGLQLLFES 95 (538)
T ss_pred CCEEEECHHHHHHhhh
Confidence 9999999999999986
No 65
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.11 E-value=2.3e-10 Score=103.66 Aligned_cols=77 Identities=30% Similarity=0.544 Sum_probs=59.1
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCC---hhhhhccCCCeEEEcCCCC-----------------CCCCChHHHHHHHHHH-C
Q 039151 202 KHNILRRLASYGCQIIVVPSTWP---ASETLKLKPDGVLFSNGPG-----------------DPSAVPYAVAIVKELL-G 260 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~---~~~i~~~~~DgIiLSgGPG-----------------dp~~~~~~i~~Ir~~~-~ 260 (279)
..++++...+.|.-+.++|.-.+ +.+++ ...|||+||||-. +|.+...++.+||.++ +
T Consensus 28 ~~~yv~ai~~aGg~pillP~~~d~~~~~~~l-~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~ 106 (243)
T COG2071 28 PYDYVDAIIKAGGIPILLPALEDPEDARQYL-DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALER 106 (243)
T ss_pred HHHHHHHHHHcCCceEEecCCCCHHHHHHHH-hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHc
Confidence 35677888788988889994333 33343 3689999999921 1223456889999999 7
Q ss_pred CCCEeeecHHHHHHHHHcC
Q 039151 261 KVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 261 ~~PILGICLGhQLLa~AlG 279 (279)
++||||||+|+|+|+.|||
T Consensus 107 ~iPILgICRG~QllNVa~G 125 (243)
T COG2071 107 GIPILGICRGLQLLNVALG 125 (243)
T ss_pred CCCEEEEccchHHHHHHhc
Confidence 9999999999999999998
No 66
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.11 E-value=2.6e-10 Score=99.84 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=61.9
Q ss_pred EEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC----ChHHHHHHHHHH-CCCCEeee
Q 039151 194 VIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA----VPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 194 I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~----~~~~i~~Ir~~~-~~~PILGI 267 (279)
|.|+-+ |...+.+++|++.|+++.+++. .+++ .++|+|||+||+++..+ .....+.||++. .++|++||
T Consensus 2 igvl~~qg~~~e~~~~l~~~g~~~~~v~~---~~~l--~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGI 76 (184)
T TIGR03800 2 IGVLALQGAVREHARALEALGVEGVEVKR---PEQL--DEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGT 76 (184)
T ss_pred EEEEEccCCHHHHHHHHHHCCCEEEEECC---hHHh--ccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEE
Confidence 555555 7777788999999999998864 3444 37999999999865421 223567788888 68999999
Q ss_pred cHHHHHHHHHc
Q 039151 268 CMGHQLLGQAL 278 (279)
Q Consensus 268 CLGhQLLa~Al 278 (279)
|+|||+|+.++
T Consensus 77 C~G~qlL~~~~ 87 (184)
T TIGR03800 77 CAGLIMLAKEI 87 (184)
T ss_pred CHHHHHHHhhh
Confidence 99999999885
No 67
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.08 E-value=3.1e-10 Score=103.09 Aligned_cols=75 Identities=24% Similarity=0.364 Sum_probs=53.9
Q ss_pred HHHHHHHHH----CCCeEEEEcCCC---Chh---hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHH
Q 039151 203 HNILRRLAS----YGCQIIVVPSTW---PAS---ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGH 271 (279)
Q Consensus 203 ~~I~r~L~~----~G~~v~vvp~~~---~~~---~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGh 271 (279)
.++.++|.. .+.++.+...+. ... +.+ .++||||++|||+.+.. ...+..++.++ .++|+||||+||
T Consensus 17 ~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l-~~~dgivl~GG~~~~~~-~~~~~~i~~~~~~~~PvlGIClG~ 94 (235)
T cd01746 17 LSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEAL-KGADGILVPGGFGIRGV-EGKILAIKYARENNIPFLGICLGM 94 (235)
T ss_pred HHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhh-ccCCEEEECCCCCCcch-hhHHHHHHHHHHCCceEEEEEhHH
Confidence 445555543 556666654332 111 222 47999999999998875 45677888888 699999999999
Q ss_pred HHHHHHcC
Q 039151 272 QLLGQALG 279 (279)
Q Consensus 272 QLLa~AlG 279 (279)
|+|+.++|
T Consensus 95 Q~l~~~~g 102 (235)
T cd01746 95 QLAVIEFA 102 (235)
T ss_pred HHHHHHHH
Confidence 99999986
No 68
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.05 E-value=1.3e-09 Score=98.19 Aligned_cols=82 Identities=28% Similarity=0.363 Sum_probs=63.2
Q ss_pred cEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCC--------CChHHHHHHHHHH-
Q 039151 192 YRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS--------AVPYAVAIVKELL- 259 (279)
Q Consensus 192 ~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~--------~~~~~i~~Ir~~~- 259 (279)
+||+|+|| |. ...+.+.|++.|+++.++++... ++ .++|+|||+||+..-. ......+.++++.
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~--~l--~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~ 76 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDG--SL--PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAE 76 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCC--CC--CCCCEEEECCCCcccccccccchhcchHHHHHHHHHHH
Confidence 47999999 45 35789999999999999876422 23 3799999999974211 1234667788877
Q ss_pred CCCCEeeecHHHHHHHHH
Q 039151 260 GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 260 ~~~PILGICLGhQLLa~A 277 (279)
.++|++|||.|+|+|+.+
T Consensus 77 ~g~pvlgIC~G~QlLa~~ 94 (227)
T TIGR01737 77 KGVPVLGICNGFQILVEA 94 (227)
T ss_pred cCCEEEEECHHHHHHHHc
Confidence 689999999999999985
No 69
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.03 E-value=1e-09 Score=101.75 Aligned_cols=78 Identities=24% Similarity=0.322 Sum_probs=57.5
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChhhhhc--cCCCeEEEcCCCCCCCC---ChHHHHHHHHHH-C-----CCCEeeecHH
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPASETLK--LKPDGVLFSNGPGDPSA---VPYAVAIVKELL-G-----KVPVFGICMG 270 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~~i~~--~~~DgIiLSgGPGdp~~---~~~~i~~Ir~~~-~-----~~PILGICLG 270 (279)
..++++++++.|+.|..++.+.+.+++.+ ..+|||+++|||.+... ......+++.++ . .+|+||||||
T Consensus 22 ~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG 101 (273)
T cd01747 22 AASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLG 101 (273)
T ss_pred HHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHH
Confidence 46789999999999888876643344332 47899999999877642 233445556665 2 3899999999
Q ss_pred HHHHHHHcC
Q 039151 271 HQLLGQALG 279 (279)
Q Consensus 271 hQLLa~AlG 279 (279)
||+|+.++|
T Consensus 102 ~QlL~~~~g 110 (273)
T cd01747 102 FELLTYLTS 110 (273)
T ss_pred HHHHHHHhC
Confidence 999999876
No 70
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=98.93 E-value=3.5e-09 Score=97.05 Aligned_cols=81 Identities=17% Similarity=0.325 Sum_probs=62.3
Q ss_pred cEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC----ChHHHHHHHHHH-CCCCEe
Q 039151 192 YRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA----VPYAVAIVKELL-GKVPVF 265 (279)
Q Consensus 192 ~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~----~~~~i~~Ir~~~-~~~PIL 265 (279)
++|.|+.+ |.-.+..++|++.|+++.++.. .+++. ++|+|||+||..+... .....+.|+++. .++|+|
T Consensus 2 m~igVLa~qG~~~e~~~aL~~lG~ev~~v~~---~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvL 76 (248)
T PLN02832 2 MAIGVLALQGSFNEHIAALRRLGVEAVEVRK---PEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVW 76 (248)
T ss_pred cEEEEEeCCCchHHHHHHHHHCCCcEEEeCC---HHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEE
Confidence 57999998 7778888999999999988864 35553 7899999875432211 113566778777 689999
Q ss_pred eecHHHHHHHHH
Q 039151 266 GICMGHQLLGQA 277 (279)
Q Consensus 266 GICLGhQLLa~A 277 (279)
|||+|||+|+..
T Consensus 77 GiC~GmqlLa~~ 88 (248)
T PLN02832 77 GTCAGLIFLAER 88 (248)
T ss_pred EEChhHHHHHHH
Confidence 999999999875
No 71
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=98.91 E-value=2.9e-09 Score=92.77 Aligned_cols=70 Identities=24% Similarity=0.456 Sum_probs=54.0
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151 205 ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG 279 (279)
-.+.|++.|+++..+... +++ .++|+||++||+....+. ....+.|++++ .++|+||||+|||+|+.++|
T Consensus 13 ~~~~l~~~g~~v~~v~~~---~~l--~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~~~ 87 (183)
T cd01749 13 HIRALERLGVEVIEVRTP---EDL--EGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKEVE 87 (183)
T ss_pred HHHHHHHCCCeEEEECCH---HHh--ccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHHhc
Confidence 348999999999988652 333 379999999988543321 23467788888 79999999999999999875
No 72
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.91 E-value=6.2e-09 Score=96.08 Aligned_cols=87 Identities=21% Similarity=0.279 Sum_probs=62.2
Q ss_pred ccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCCChhh-hhccCCCeEEEcCCCC--CCCCC---------hHHHHHH
Q 039151 191 TYRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTWPASE-TLKLKPDGVLFSNGPG--DPSAV---------PYAVAIV 255 (279)
Q Consensus 191 ~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~~~~~-i~~~~~DgIiLSgGPG--dp~~~---------~~~i~~I 255 (279)
++||+|+.+ |+ .....+.|++.|+++.+++.....+. ....++|+|+|.||.. |.... ....+.|
T Consensus 3 ~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~I 82 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDI 82 (261)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHH
Confidence 368999998 76 46778999999999999875321110 1114799999999963 32211 1122667
Q ss_pred HHHH-CCCCEeeecHHHHHHHHH
Q 039151 256 KELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 256 r~~~-~~~PILGICLGhQLLa~A 277 (279)
++++ .++|+||||+|+|+|+.+
T Consensus 83 k~f~~~gkpVLGICnG~QlLa~~ 105 (261)
T PRK01175 83 EEFIDEGYPIIGICNGFQVLVEL 105 (261)
T ss_pred HHHHHCCCeEEEECHHHHHHHHC
Confidence 8877 799999999999999974
No 73
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=98.86 E-value=5.7e-09 Score=92.53 Aligned_cols=79 Identities=30% Similarity=0.422 Sum_probs=54.9
Q ss_pred cCchHHHHH-HHHHCCCeEEEEc---CCCC-hhhhhccCCCeEEEcCCCCCCCCChHH----HHHHHHHH-CCCCEeeec
Q 039151 199 FGIKHNILR-RLASYGCQIIVVP---STWP-ASETLKLKPDGVLFSNGPGDPSAVPYA----VAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 199 ~G~k~~I~r-~L~~~G~~v~vvp---~~~~-~~~i~~~~~DgIiLSgGPGdp~~~~~~----i~~Ir~~~-~~~PILGIC 268 (279)
||-..|++- .|.+-|....++. ...+ .+++. ++||++|||++.|......+ +..++++. .++||+|||
T Consensus 23 yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~--ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGIC 100 (245)
T KOG3179|consen 23 YGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLE--KYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGIC 100 (245)
T ss_pred hcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhh--hhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEe
Confidence 455555554 4556677666554 3333 33443 69999999999887654433 34556666 589999999
Q ss_pred HHHHHHHHHcC
Q 039151 269 MGHQLLGQALG 279 (279)
Q Consensus 269 LGhQLLa~AlG 279 (279)
+|||++|+|.|
T Consensus 101 FGHQiiara~G 111 (245)
T KOG3179|consen 101 FGHQIIARAKG 111 (245)
T ss_pred ccHHHHHHhhC
Confidence 99999999987
No 74
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.85 E-value=9.4e-09 Score=89.97 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=62.2
Q ss_pred cEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCC--CC--ChHHHHHHHHHHCCCCEee
Q 039151 192 YRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP--SA--VPYAVAIVKELLGKVPVFG 266 (279)
Q Consensus 192 ~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp--~~--~~~~i~~Ir~~~~~~PILG 266 (279)
++|.|+.+ |.-..-.++|++.|+++.++. +++++ .++|+|||+||++.. .. .....+.|+++..++|++|
T Consensus 3 ~~igVLalqG~~~Eh~~al~~lG~~v~~v~---~~~~l--~~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~~kpilG 77 (179)
T PRK13526 3 QKVGVLAIQGGYQKHADMFKSLGVEVKLVK---FNNDF--DSIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKPVFG 77 (179)
T ss_pred cEEEEEECCccHHHHHHHHHHcCCcEEEEC---CHHHH--hCCCEEEECCChHHHHHHHhhhcCcHHHHHHHHcCCcEEE
Confidence 57889987 776677889999999988775 34555 379999999886654 11 1236778888776789999
Q ss_pred ecHHHHHHHH
Q 039151 267 ICMGHQLLGQ 276 (279)
Q Consensus 267 ICLGhQLLa~ 276 (279)
||.|+|+|+.
T Consensus 78 ICaG~qlL~~ 87 (179)
T PRK13526 78 TCAGSIILSK 87 (179)
T ss_pred EcHHHHHHHc
Confidence 9999999986
No 75
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=98.85 E-value=1.1e-08 Score=92.83 Aligned_cols=83 Identities=22% Similarity=0.174 Sum_probs=59.4
Q ss_pred EEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCCChhh-hhccCCCeEEEcCCCCCCCC--------ChH-HHHHHHHHH-C
Q 039151 195 IAYDF-GI--KHNILRRLASYGCQIIVVPSTWPASE-TLKLKPDGVLFSNGPGDPSA--------VPY-AVAIVKELL-G 260 (279)
Q Consensus 195 ~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~~~~~-i~~~~~DgIiLSgGPGdp~~--------~~~-~i~~Ir~~~-~ 260 (279)
+|+-+ |. ..++++.|++.|+++.+++....... ....++|+|||+||+..... ... ..+.++++. .
T Consensus 2 ~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~ 81 (238)
T cd01740 2 AVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAER 81 (238)
T ss_pred EEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhC
Confidence 44444 65 56789999999999999986432111 11147999999999742111 112 667888888 6
Q ss_pred CCCEeeecHHHHHHHHH
Q 039151 261 KVPVFGICMGHQLLGQA 277 (279)
Q Consensus 261 ~~PILGICLGhQLLa~A 277 (279)
++|+||||.|+|+|+.+
T Consensus 82 g~pvlGIC~G~QlL~~~ 98 (238)
T cd01740 82 GGLVLGICNGFQILVEL 98 (238)
T ss_pred CCeEEEECcHHHHHHHc
Confidence 99999999999999986
No 76
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.81 E-value=1.3e-08 Score=89.43 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=57.8
Q ss_pred EEEEEcCc---hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC-----hHHHHHHHHHH-CCCCE
Q 039151 194 VIAYDFGI---KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV-----PYAVAIVKELL-GKVPV 264 (279)
Q Consensus 194 I~viD~G~---k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~-----~~~i~~Ir~~~-~~~PI 264 (279)
|+++++|- -.++.+.+.++|+++++++...+ + .++|+|+|.||.....+. ....+.|++++ .++|+
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~---~--~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pv 75 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPEG---L--GDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPV 75 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCCCC---C--CCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcE
Confidence 46777763 45566778889999999875433 2 368999998777322211 12456777777 69999
Q ss_pred eeecHHHHHHHHHc
Q 039151 265 FGICMGHQLLGQAL 278 (279)
Q Consensus 265 LGICLGhQLLa~Al 278 (279)
||||.|+|+|+.++
T Consensus 76 lgiC~G~qlL~~~~ 89 (194)
T cd01750 76 LGICGGYQMLGKYI 89 (194)
T ss_pred EEECHHHHHhhhhc
Confidence 99999999999875
No 77
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.80 E-value=3.2e-08 Score=88.83 Aligned_cols=82 Identities=28% Similarity=0.357 Sum_probs=61.7
Q ss_pred cEEEEEEc-Cch--HHHHHHHH-HCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCC--------CCChHHHHHHHHHH
Q 039151 192 YRVIAYDF-GIK--HNILRRLA-SYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP--------SAVPYAVAIVKELL 259 (279)
Q Consensus 192 ~~I~viD~-G~k--~~I~r~L~-~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp--------~~~~~~i~~Ir~~~ 259 (279)
+||+|++| |.. .++.++|+ ..|+++..++... .++ .++|+|+|+||+..- .......+.++++.
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~--~~l--~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~ 76 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKE--TDL--DGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFA 76 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCc--CCC--CCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHH
Confidence 47999999 543 56889998 8899998886532 233 378999999987421 11245677788877
Q ss_pred -CCCCEeeecHHHHHHHHH
Q 039151 260 -GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 260 -~~~PILGICLGhQLLa~A 277 (279)
.++|++|||.|+|+|+.+
T Consensus 77 ~~g~~ilgIC~G~qlLa~~ 95 (219)
T PRK03619 77 EKGKPVLGICNGFQILTEA 95 (219)
T ss_pred HCCCEEEEECHHHHHHHHc
Confidence 699999999999999986
No 78
>PRK05380 pyrG CTP synthetase; Validated
Probab=98.79 E-value=1.6e-08 Score=101.07 Aligned_cols=88 Identities=18% Similarity=0.312 Sum_probs=63.3
Q ss_pred CccEEEEEE-c-C---chHHHHHHHHHCC----CeEEEEcCCC---C---hhhhhccCCCeEEEcCCCCCCCCChHHHHH
Q 039151 190 KTYRVIAYD-F-G---IKHNILRRLASYG----CQIIVVPSTW---P---ASETLKLKPDGVLFSNGPGDPSAVPYAVAI 254 (279)
Q Consensus 190 ~~~~I~viD-~-G---~k~~I~r~L~~~G----~~v~vvp~~~---~---~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~ 254 (279)
...+|+++- | . ...|+.++|+..| +++.+...+. + ..+.+ .++|||+|+||+|++.. ...++.
T Consensus 287 ~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L-~~~DGIIlpGGfG~~~~-~g~i~~ 364 (533)
T PRK05380 287 GEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELL-KGVDGILVPGGFGERGI-EGKILA 364 (533)
T ss_pred CceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHh-hcCCEEEecCCCCcccc-ccHHHH
Confidence 457888884 3 2 2567888887654 4555544332 1 11222 37999999999998654 356788
Q ss_pred HHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151 255 VKELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 255 Ir~~~-~~~PILGICLGhQLLa~AlG 279 (279)
++.+. .++|+||||+|||+|+.++|
T Consensus 365 i~~a~e~~iPiLGIClGmQll~va~G 390 (533)
T PRK05380 365 IRYARENNIPFLGICLGMQLAVIEFA 390 (533)
T ss_pred HHHHHHCCCcEEEEchHHHHHHHHhc
Confidence 88888 69999999999999999986
No 79
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=98.67 E-value=1.2e-07 Score=89.18 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=59.5
Q ss_pred CccEEEEEEcCc-----hHHHHHHHHHCCCe--EEEEcCC----------------CChhhhhccCCCeEEEcCCCCC--
Q 039151 190 KTYRVIAYDFGI-----KHNILRRLASYGCQ--IIVVPST----------------WPASETLKLKPDGVLFSNGPGD-- 244 (279)
Q Consensus 190 ~~~~I~viD~G~-----k~~I~r~L~~~G~~--v~vvp~~----------------~~~~~i~~~~~DgIiLSgGPGd-- 244 (279)
..++|++++.=- ...++|.|.....+ ++.+... .+++++...++||+||+|+|-+
T Consensus 34 rpl~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~ 113 (302)
T PRK05368 34 RPLKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQL 113 (302)
T ss_pred CCccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCc
Confidence 358999999821 24577777554334 4444221 1344555678999999999976
Q ss_pred CCCC-hHH--HHHHHHHH--CCCCEeeecHHHHHHHHHcC
Q 039151 245 PSAV-PYA--VAIVKELL--GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 245 p~~~-~~~--i~~Ir~~~--~~~PILGICLGhQLLa~AlG 279 (279)
+.+. +++ +..+.+++ ..+|+||||+|||+++.|+|
T Consensus 114 ~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~alg 153 (302)
T PRK05368 114 PFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLY 153 (302)
T ss_pred cCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcC
Confidence 4432 322 33333333 48999999999999999987
No 80
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.62 E-value=1.3e-07 Score=85.26 Aligned_cols=83 Identities=28% Similarity=0.363 Sum_probs=62.9
Q ss_pred ccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCCChhhhhcc-CCCeEEEcCCC--CCCCC------ChHHHHHHHHH
Q 039151 191 TYRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTWPASETLKL-KPDGVLFSNGP--GDPSA------VPYAVAIVKEL 258 (279)
Q Consensus 191 ~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~-~~DgIiLSgGP--Gdp~~------~~~~i~~Ir~~ 258 (279)
++||+|+-| |. ...+.++++..|.++..|.+.. +... ++|+|+++||- ||--. .....+.++++
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d----~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~ 77 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSD----LLLGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREF 77 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeee----cccCCCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHH
Confidence 368999999 65 4668889998899999887632 2222 69999999884 44322 24566777777
Q ss_pred H-CCCCEeeecHHHHHHHHH
Q 039151 259 L-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 259 ~-~~~PILGICLGhQLLa~A 277 (279)
. +++|+||||-|+|+|.++
T Consensus 78 a~~g~~vLGICNGfQiL~e~ 97 (231)
T COG0047 78 AEKGKPVLGICNGFQILSEA 97 (231)
T ss_pred HHCCCeEEEEcchhHHHHHc
Confidence 7 799999999999999864
No 81
>PLN02327 CTP synthase
Probab=98.57 E-value=6.9e-08 Score=96.96 Aligned_cols=88 Identities=23% Similarity=0.350 Sum_probs=61.3
Q ss_pred CccEEEEEE-c-C---chHHHHHHHHH----CCCeEEEEcCCC-Chh---------------hhhccCCCeEEEcCCCCC
Q 039151 190 KTYRVIAYD-F-G---IKHNILRRLAS----YGCQIIVVPSTW-PAS---------------ETLKLKPDGVLFSNGPGD 244 (279)
Q Consensus 190 ~~~~I~viD-~-G---~k~~I~r~L~~----~G~~v~vvp~~~-~~~---------------~i~~~~~DgIiLSgGPGd 244 (279)
...+|+++- | . ...+|..+|.. .+.++.+...+. ..+ +.+ .++|||+++||+|+
T Consensus 296 ~~v~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L-~~~DGIvvpGGfG~ 374 (557)
T PLN02327 296 EPVRIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLL-KGADGILVPGGFGD 374 (557)
T ss_pred CceEEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhh-ccCCEEEeCCCCCC
Confidence 347888873 4 2 24677788764 466666553321 110 111 47999999999999
Q ss_pred CCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151 245 PSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 245 p~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG 279 (279)
+... ..+..++.+. .++|+||||+|||+++.+++
T Consensus 375 ~~~~-G~i~ai~~are~~iP~LGIClGmQl~viefa 409 (557)
T PLN02327 375 RGVE-GKILAAKYARENKVPYLGICLGMQIAVIEFA 409 (557)
T ss_pred cccc-cHHHHHHHHHHcCCCEEEEcHHHHHHHHHHH
Confidence 7654 4567778777 79999999999999998864
No 82
>PRK06186 hypothetical protein; Validated
Probab=98.54 E-value=2.6e-07 Score=83.79 Aligned_cols=74 Identities=19% Similarity=0.133 Sum_probs=51.9
Q ss_pred hHHHHHHHHH----CCCeEEEEcCCC---ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHH
Q 039151 202 KHNILRRLAS----YGCQIIVVPSTW---PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQL 273 (279)
Q Consensus 202 k~~I~r~L~~----~G~~v~vvp~~~---~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQL 273 (279)
..|+.++|+. .+.++.+...+. ..++.+ .++|||++.||-|.-. .+..+..++.+. .++|+||||||||+
T Consensus 17 Y~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l-~~~dgilvpgGfg~rg-~~Gki~ai~~Are~~iP~LGIClGmQ~ 94 (229)
T PRK06186 17 HQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDL-AGFDGIWCVPGSPYRN-DDGALTAIRFARENGIPFLGTCGGFQH 94 (229)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEEEchhhcCChhhH-hhCCeeEeCCCCCccc-HhHHHHHHHHHHHcCCCeEeechhhHH
Confidence 4677788765 466666654332 111111 3789999999987533 467788999998 79999999999997
Q ss_pred HHHH
Q 039151 274 LGQA 277 (279)
Q Consensus 274 La~A 277 (279)
+..+
T Consensus 95 avIe 98 (229)
T PRK06186 95 ALLE 98 (229)
T ss_pred HHHH
Confidence 6544
No 83
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.29 E-value=2.4e-06 Score=75.45 Aligned_cols=71 Identities=18% Similarity=0.334 Sum_probs=49.2
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCC--CCC---hHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151 205 ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDP--SAV---PYAVAIVKELL-GKVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp--~~~---~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al 278 (279)
-++.|++.|+++.++.... .+++. ++|+|||.||.-.. ... ....+.|+++. .++|++|||.|+|||+..+
T Consensus 16 ~~~~l~~~G~~v~~~s~~~-~~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 16 NLELLEAAGAELVPFSPLK-DEELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred HHHHHHHCCCEEEEECCCC-CCCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence 3578899999998875421 12332 48999998763211 111 23567788877 6899999999999998753
No 84
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.20 E-value=1.1e-05 Score=60.18 Aligned_cols=72 Identities=29% Similarity=0.515 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh--hhhccCCCeEEEcCCCCCCCCC---hHHHHHHHHHH-CCCCEeeecHHHHHH
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS--ETLKLKPDGVLFSNGPGDPSAV---PYAVAIVKELL-GKVPVFGICMGHQLL 274 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~--~i~~~~~DgIiLSgGPGdp~~~---~~~i~~Ir~~~-~~~PILGICLGhQLL 274 (279)
....+.|++.++++++++...... .....++|++|++||+..+... ...++.+++.. .++|++|+|.|+|++
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 467788899999999998754311 0112479999999998876543 56778888888 689999999999987
No 85
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.15 E-value=6.4e-06 Score=81.43 Aligned_cols=84 Identities=23% Similarity=0.330 Sum_probs=57.8
Q ss_pred cEEEEEE-c-C---chHHHHHHHHHC----CCeEEEEcCCC-C-----hhhhhccCCCeEEEcCCCCCCCCChHHHHHHH
Q 039151 192 YRVIAYD-F-G---IKHNILRRLASY----GCQIIVVPSTW-P-----ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVK 256 (279)
Q Consensus 192 ~~I~viD-~-G---~k~~I~r~L~~~----G~~v~vvp~~~-~-----~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir 256 (279)
.+|+++- | . ...|+..+|+.. ++++.+...+. + .+++.. .+|||++.||-|.-. .+..+..++
T Consensus 289 v~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~-~~dgIlVPGGFG~RG-~eGkI~Ai~ 366 (533)
T COG0504 289 VTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEK-LVDGILVPGGFGYRG-VEGKIAAIR 366 (533)
T ss_pred eEEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhh-cCCEEEeCCCCCcCc-hHHHHHHHH
Confidence 6788774 2 1 246788888765 45555554331 1 112222 289999999998543 456788889
Q ss_pred HHH-CCCCEeeecHHHHHHHHH
Q 039151 257 ELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 257 ~~~-~~~PILGICLGhQLLa~A 277 (279)
.+- .++|+||||||||+....
T Consensus 367 yAREn~iP~lGIClGmQ~aviE 388 (533)
T COG0504 367 YARENNIPFLGICLGMQLAVIE 388 (533)
T ss_pred HHHhcCCCEEEEchhHHHHHHH
Confidence 888 699999999999998754
No 86
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.13 E-value=1.2e-05 Score=57.34 Aligned_cols=72 Identities=31% Similarity=0.517 Sum_probs=54.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh--hhhccCCCeEEEcCCCCCCCCC---hHHHHHHHHHH-CCCCEeeecHHHHHH
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS--ETLKLKPDGVLFSNGPGDPSAV---PYAVAIVKELL-GKVPVFGICMGHQLL 274 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~--~i~~~~~DgIiLSgGPGdp~~~---~~~i~~Ir~~~-~~~PILGICLGhQLL 274 (279)
.++.+.+++.++.+.+++...... .....++|++|++||+..+... ...++.+++.. .+.|++|+|.|.|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 467788888999999998754322 1223589999999998876553 56677777777 689999999999874
No 87
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.08 E-value=7.1e-06 Score=81.74 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=48.1
Q ss_pred cEEEEEEcCchHHHHHHHHHCCC-eEEEEcCCCChhhhhccCCCeEEEcCCCCC-CCCC-hHHHHHHHHHHCCCCEeeec
Q 039151 192 YRVIAYDFGIKHNILRRLASYGC-QIIVVPSTWPASETLKLKPDGVLFSNGPGD-PSAV-PYAVAIVKELLGKVPVFGIC 268 (279)
Q Consensus 192 ~~I~viD~G~k~~I~r~L~~~G~-~v~vvp~~~~~~~i~~~~~DgIiLSgGPGd-p~~~-~~~i~~Ir~~~~~~PILGIC 268 (279)
++|-|+... ++.++++..|. ++.++..+ +++++. ++|+|||+||.-. ..+. ....+.|+++ ++|+||||
T Consensus 1 m~iGvlal~---sv~~al~~lg~~~~~vv~~~-~~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~--g~pvlGIC 72 (476)
T PRK06278 1 MEIGLLDIK---GSLPCFENFGNLPTKIIDEN-NIKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF--DGYIIGIC 72 (476)
T ss_pred CEEEEEehh---hHHHHHHHhcCCCcEEEEeC-ChHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--CCeEEEEc
Confidence 357777763 34556666665 56665432 345663 7999999876311 1111 1222333333 89999999
Q ss_pred HHHHHHHHH
Q 039151 269 MGHQLLGQA 277 (279)
Q Consensus 269 LGhQLLa~A 277 (279)
.|+|||+..
T Consensus 73 gG~QmLg~~ 81 (476)
T PRK06278 73 SGFQILSEK 81 (476)
T ss_pred HHHHhcccc
Confidence 999999875
No 88
>PRK00784 cobyric acid synthase; Provisional
Probab=97.97 E-value=2.2e-05 Score=78.36 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=57.5
Q ss_pred ccEEEEEEcCc--hHHHHHHHHH-CCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh-----HHHHHHHHHH-CC
Q 039151 191 TYRVIAYDFGI--KHNILRRLAS-YGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP-----YAVAIVKELL-GK 261 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~-~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~-----~~i~~Ir~~~-~~ 261 (279)
+.+|+|+.+.. ...=++.|++ .|+++..+.. .+++. ++|+|+|.||.-.-.... ...+.|+++. .+
T Consensus 251 ~~~i~v~~~~~a~~f~nl~~l~~~~g~~v~~~s~---~~~l~--~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g 325 (488)
T PRK00784 251 ALRIAVIRLPRISNFTDFDPLRAEPGVDVRYVRP---GEPLP--DADLVILPGSKNTIADLAWLRESGWDEAIRAHARRG 325 (488)
T ss_pred ceEEEEEeCCCcCCccChHHHhhcCCCeEEEECC---ccccc--cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcC
Confidence 47899998532 2222567876 8999988854 23443 689999988762111111 2456777777 68
Q ss_pred CCEeeecHHHHHHHHHc
Q 039151 262 VPVFGICMGHQLLGQAL 278 (279)
Q Consensus 262 ~PILGICLGhQLLa~Al 278 (279)
+|+||||.|+|+|+..+
T Consensus 326 ~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 326 GPVLGICGGYQMLGRRI 342 (488)
T ss_pred CeEEEECHHHHHHhhhc
Confidence 99999999999999864
No 89
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=97.95 E-value=2.5e-05 Score=72.22 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=55.2
Q ss_pred cEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCC--CCCCC-----------hHHHHH
Q 039151 192 YRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPG--DPSAV-----------PYAVAI 254 (279)
Q Consensus 192 ~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPG--dp~~~-----------~~~i~~ 254 (279)
+||+|+-| |. ....+++|+..|+++..|..+.- ..+..-.++|+|+|+||-. |.-.. ....+.
T Consensus 2 pkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~ 81 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDA 81 (259)
T ss_dssp -EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHH
Confidence 58999988 65 57889999999999998865321 1111124799999999863 32221 123567
Q ss_pred HHHHH-C-CCCEeeecHHHHHHHH
Q 039151 255 VKELL-G-KVPVFGICMGHQLLGQ 276 (279)
Q Consensus 255 Ir~~~-~-~~PILGICLGhQLLa~ 276 (279)
|++++ + ++|+||||-|+|+|..
T Consensus 82 i~~f~~~~g~~vLGIcNGfQiL~~ 105 (259)
T PF13507_consen 82 IREFLERPGGFVLGICNGFQILVE 105 (259)
T ss_dssp HHHHHHCTT-EEEEECHHHHHHCC
T ss_pred HHHHHhcCCCeEEEEchHhHHHHH
Confidence 78888 5 8999999999999964
No 90
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=97.89 E-value=4.6e-05 Score=72.68 Aligned_cols=78 Identities=26% Similarity=0.422 Sum_probs=59.5
Q ss_pred EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CCCC
Q 039151 193 RVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GKVP 263 (279)
Q Consensus 193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~~P 263 (279)
-|.++|+|. ..+|-++|+.+|+.+..+.. +.+|. +.|.+|+ +|.|+..-. ....+.+|+.+ .++|
T Consensus 3 vv~~ld~~agn~~si~nal~hlg~~i~~v~~---P~DI~--~a~rLIf-PGVGnfg~~~D~L~~~Gf~eplr~YiesgkP 76 (541)
T KOG0623|consen 3 VVTLLDYGAGNVRSIRNALRHLGFSIKDVQT---PGDIL--NADRLIF-PGVGNFGPAMDVLNRTGFAEPLRKYIESGKP 76 (541)
T ss_pred eEEEEecCCccHHHHHHHHHhcCceeeeccC---chhhc--cCceEee-cCcccchHHHHHHhhhhhHHHHHHHHhcCCC
Confidence 367899976 68899999999999988753 44563 7888888 677764321 23556777777 7999
Q ss_pred EeeecHHHHHHHH
Q 039151 264 VFGICMGHQLLGQ 276 (279)
Q Consensus 264 ILGICLGhQLLa~ 276 (279)
++|||+|.|+|..
T Consensus 77 fmgicvGlQaLF~ 89 (541)
T KOG0623|consen 77 FMGICVGLQALFD 89 (541)
T ss_pred eEeehhhHHHHhc
Confidence 9999999999864
No 91
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.83 E-value=0.00013 Score=62.83 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=38.1
Q ss_pred cCCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 231 LKPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.++|+|++.||++.. ...+...++++++. .++|+.|||.|.++|+.|
T Consensus 75 ~~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 75 DDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred hHCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 368999999998532 12356788899888 799999999999999986
No 92
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=97.81 E-value=0.0001 Score=66.32 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=42.0
Q ss_pred hhhhhccCCCeEEEcCCCCCCC-------------CChHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151 225 ASETLKLKPDGVLFSNGPGDPS-------------AVPYAVAIVKELL-GKVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 225 ~~~i~~~~~DgIiLSgGPGdp~-------------~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al 278 (279)
++++...+||+|||+||-|.+. ..+...++++++. .++|+..||.|-|+|+.++
T Consensus 78 l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 78 LAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 3344445799999999966321 1456888899888 7999999999999998875
No 93
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=97.71 E-value=0.00017 Score=64.91 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=41.5
Q ss_pred hhhhhccCCCeEEEcCCCCCCC-------------CChHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151 225 ASETLKLKPDGVLFSNGPGDPS-------------AVPYAVAIVKELL-GKVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 225 ~~~i~~~~~DgIiLSgGPGdp~-------------~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al 278 (279)
++++...+||+|||+||.+.+. ..+..+++++++. .++|+.+||.|-++|+.+.
T Consensus 75 l~ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~ 142 (213)
T cd03133 75 LAKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKIL 142 (213)
T ss_pred hHHCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHh
Confidence 3444334799999999965321 2356788899888 7999999999999999876
No 94
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.67 E-value=0.00012 Score=65.31 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=56.5
Q ss_pred cEEEEEEcCc------hHHHHHHHHHC-CCeEEEEcCCC--C-hhhhhccCCCeEEEcCCCCCCCCCh------HHHHHH
Q 039151 192 YRVIAYDFGI------KHNILRRLASY-GCQIIVVPSTW--P-ASETLKLKPDGVLFSNGPGDPSAVP------YAVAIV 255 (279)
Q Consensus 192 ~~I~viD~G~------k~~I~r~L~~~-G~~v~vvp~~~--~-~~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~I 255 (279)
.+|++|-... ..++.+.+.+. |++++.+.... . .+.+ .++|+|+++| ||....- ...+.+
T Consensus 32 ~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l--~~ad~I~l~G--G~~~~~~~~l~~~~l~~~l 107 (212)
T cd03146 32 PKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDAL--LEADVIYVGG--GNTFNLLAQWREHGLDAIL 107 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHH--hcCCEEEECC--chHHHHHHHHHHcCHHHHH
Confidence 4677776532 45677888999 99998875321 1 2333 3799999976 5654321 234557
Q ss_pred HHHH-CCCCEeeecHHHHHHHH
Q 039151 256 KELL-GKVPVFGICMGHQLLGQ 276 (279)
Q Consensus 256 r~~~-~~~PILGICLGhQLLa~ 276 (279)
+++. +++|++|||.|+|+++.
T Consensus 108 ~~~~~~g~~i~G~SAGa~i~~~ 129 (212)
T cd03146 108 KAALERGVVYIGWSAGSNCWFP 129 (212)
T ss_pred HHHHHCCCEEEEECHhHHhhCC
Confidence 7666 68999999999999975
No 95
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=97.64 E-value=0.00039 Score=58.56 Aligned_cols=74 Identities=26% Similarity=0.321 Sum_probs=52.2
Q ss_pred HHHHHHHHCCCeEEEEcCC-C----------------ChhhhhccCCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCC
Q 039151 204 NILRRLASYGCQIIVVPST-W----------------PASETLKLKPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVP 263 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~-~----------------~~~~i~~~~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~P 263 (279)
.+.+.|+..|++++++..+ . +.++....++|+|++.||++.. ...+..+++|+++. .++|
T Consensus 17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (165)
T cd03134 17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKP 96 (165)
T ss_pred HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCe
Confidence 3456677778888877433 1 1222222368999999998422 23356788898888 7999
Q ss_pred EeeecHHHHHHHHH
Q 039151 264 VFGICMGHQLLGQA 277 (279)
Q Consensus 264 ILGICLGhQLLa~A 277 (279)
+.+||-|.++|+.+
T Consensus 97 i~~ic~G~~~La~a 110 (165)
T cd03134 97 VAAICHGPWVLISA 110 (165)
T ss_pred EEEEchHHHHHHhc
Confidence 99999999999875
No 96
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=97.58 E-value=0.00032 Score=63.70 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=41.7
Q ss_pred hhhhhccCCCeEEEcCCCCCC---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 225 ASETLKLKPDGVLFSNGPGDP---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 225 ~~~i~~~~~DgIiLSgGPGdp---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
++++...+||+|||.||.|.. .+.+...+.++++. .++||..||.|-++|+.+
T Consensus 87 l~dv~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 87 ADEVNPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hhHCCHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 344444589999999997642 33456788899888 699999999999999875
No 97
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.57 E-value=0.00035 Score=76.97 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=63.8
Q ss_pred CCccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCC---ChhhhhccCCCeEEEcCCC--CCCCCC-----------h
Q 039151 189 SKTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTW---PASETLKLKPDGVLFSNGP--GDPSAV-----------P 249 (279)
Q Consensus 189 ~~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~---~~~~i~~~~~DgIiLSgGP--Gdp~~~-----------~ 249 (279)
..++||+|+-| |. .....++|...|+++..+..+. ....+ .++++|+++||- ||.-.. .
T Consensus 1035 ~~~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L--~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~ 1112 (1307)
T PLN03206 1035 TSKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISL--DDFRGIVFVGGFSYADVLDSAKGWAGSIRFNE 1112 (1307)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccc--cceeEEEEcCcCCCccccchHHHHHHHHHhCh
Confidence 34689999998 65 5778999999999987775431 11122 479999999996 554322 2
Q ss_pred HHHHHHHHHH-C-CCCEeeecHHHHHHHHH
Q 039151 250 YAVAIVKELL-G-KVPVFGICMGHQLLGQA 277 (279)
Q Consensus 250 ~~i~~Ir~~~-~-~~PILGICLGhQLLa~A 277 (279)
...+.+++++ + +.++||||.|+|+|...
T Consensus 1113 ~~~~~~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1113 PLLQQFQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred HHHHHHHHHHhCCCceEEEEcHHHHHHHHc
Confidence 3456677777 4 89999999999999873
No 98
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.54 E-value=0.00055 Score=67.70 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=58.3
Q ss_pred ccEEEEEEcC---c-hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCC-CCC----CCChHHHHHHHHHH-C
Q 039151 191 TYRVIAYDFG---I-KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGP-GDP----SAVPYAVAIVKELL-G 260 (279)
Q Consensus 191 ~~~I~viD~G---~-k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGP-Gdp----~~~~~~i~~Ir~~~-~ 260 (279)
+.+|+|+-.- + ...=++.|++.|+++..++.-. .+++. ++|+|+|.||. ... .......+.|+++. .
T Consensus 245 ~~~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~-~~~l~--~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~ 321 (451)
T PRK01077 245 GVRIAVARDAAFNFYYPENLELLRAAGAELVFFSPLA-DEALP--DCDGLYLGGGYPELFAAELAANTSMRASIRAAAAA 321 (451)
T ss_pred CceEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcC-CCCCC--CCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHc
Confidence 3688887542 2 1223577888999988875321 12332 78999999885 211 11234578888888 6
Q ss_pred CCCEeeecHHHHHHHHHc
Q 039151 261 KVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 261 ~~PILGICLGhQLLa~Al 278 (279)
++|++|||-|+|+|+..+
T Consensus 322 g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 322 GKPIYAECGGLMYLGESL 339 (451)
T ss_pred CCCEEEEcHHHHHHHhhh
Confidence 899999999999999864
No 99
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=97.53 E-value=0.00058 Score=56.32 Aligned_cols=85 Identities=21% Similarity=0.235 Sum_probs=59.4
Q ss_pred EEEEEEc-Cc----hHHHHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCC---CCCh
Q 039151 193 RVIAYDF-GI----KHNILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDP---SAVP 249 (279)
Q Consensus 193 ~I~viD~-G~----k~~I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp---~~~~ 249 (279)
||+++=+ |+ -..+.+.|+..|+++.++..+- ++++....++|.|++.||++.. ...+
T Consensus 3 ~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~~ 82 (142)
T cd03132 3 KVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSG 82 (142)
T ss_pred EEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccCh
Confidence 5555544 44 2346677888899998875321 1122222358999999987643 2346
Q ss_pred HHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 250 YAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 250 ~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
..+++++++. .++|+.+||-|-.+|+.|
T Consensus 83 ~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 83 RALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred HHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 6888999888 699999999999999975
No 100
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.52 E-value=0.0001 Score=64.45 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=36.2
Q ss_pred hhhhccCCCeEEEcCCCCCC---CCChH--HHHHHHHHH--CCCCEeeecHHHHHHHHHcC
Q 039151 226 SETLKLKPDGVLFSNGPGDP---SAVPY--AVAIVKELL--GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 226 ~~i~~~~~DgIiLSgGPGdp---~~~~~--~i~~Ir~~~--~~~PILGICLGhQLLa~AlG 279 (279)
+++...++||+||+|.|=.- .+..+ ++..+-++. ...|+||||.|+|....++|
T Consensus 56 ~~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~y 116 (175)
T cd03131 56 DDIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFY 116 (175)
T ss_pred HHccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence 34555689999999988632 22222 233333333 47899999999999887764
No 101
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.46 E-value=0.00053 Score=75.76 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=62.6
Q ss_pred CccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCC-CCh--hhhhccCCCeEEEcCC--CCCCCCC-----------hH
Q 039151 190 KTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPST-WPA--SETLKLKPDGVLFSNG--PGDPSAV-----------PY 250 (279)
Q Consensus 190 ~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~-~~~--~~i~~~~~DgIiLSgG--PGdp~~~-----------~~ 250 (279)
.++||+|+-| |. .....++|...|+++..+..+ ... ..+ .++++|+++|| -||.-.. +.
T Consensus 1034 ~~pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l--~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~ 1111 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTL--EDFKGLVACGGFSYGDVLGAGEGWAKSILFNPR 1111 (1290)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCCh--hhCcEEEECCccCCcccchHHHHHHHHhhccHH
Confidence 4579999998 65 577899999999998777542 111 123 47999999998 4553211 23
Q ss_pred HHHHHHHHH--CCCCEeeecHHHHHHHHH
Q 039151 251 AVAIVKELL--GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 251 ~i~~Ir~~~--~~~PILGICLGhQLLa~A 277 (279)
..+.+++++ .+.++||||.|+|+|...
T Consensus 1112 ~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1112 LRDQFEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHHHHHHHHhCCCceEEEEcHHHHHHHHh
Confidence 456677766 489999999999999874
No 102
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=97.45 E-value=0.00064 Score=74.49 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=62.7
Q ss_pred CccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCC-C-------hhhhh--ccCCCeEEEcCCC--CCCC-CC-----
Q 039151 190 KTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTW-P-------ASETL--KLKPDGVLFSNGP--GDPS-AV----- 248 (279)
Q Consensus 190 ~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~-~-------~~~i~--~~~~DgIiLSgGP--Gdp~-~~----- 248 (279)
.++||+|+-| |. .....++|.+.|+++..+..+. . .+++. -.++++|+++||- ||.- ..
T Consensus 976 ~kpkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~a 1055 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIA 1055 (1239)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHH
Confidence 4689999998 65 5778899999999988775421 1 11110 1479999999985 4432 11
Q ss_pred -----hHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 249 -----PYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 249 -----~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
....+.+++++ .+.|+||||.|+|+|...
T Consensus 1056 a~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857 1056 AILRNPKVRVAIDSFLARDGLILGICNGFQALVKS 1090 (1239)
T ss_pred HHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHc
Confidence 23556677777 689999999999999863
No 103
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=97.43 E-value=0.00056 Score=75.59 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=61.7
Q ss_pred CccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCC--CCCCCC-----------hHHH
Q 039151 190 KTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGP--GDPSAV-----------PYAV 252 (279)
Q Consensus 190 ~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGP--Gdp~~~-----------~~~i 252 (279)
.++||+|+-| |. .....++|...|+++..+... .......-.++++|+++||- ||.-.. ....
T Consensus 1054 ~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~ 1133 (1310)
T TIGR01735 1054 VRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLR 1133 (1310)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHH
Confidence 4579999998 65 567889999999998877643 11111111368999999994 443211 2345
Q ss_pred HHHHHHH--CCCCEeeecHHHHHHHH
Q 039151 253 AIVKELL--GKVPVFGICMGHQLLGQ 276 (279)
Q Consensus 253 ~~Ir~~~--~~~PILGICLGhQLLa~ 276 (279)
+.+++++ .+.++||||.|+|+|..
T Consensus 1134 ~~~~~f~~~~d~~~LGiCNGfQ~L~~ 1159 (1310)
T TIGR01735 1134 DQFQAFFKRPDTFSLGVCNGCQMLSN 1159 (1310)
T ss_pred HHHHHHHhCCCceEEEecHHHHHHHH
Confidence 6677777 48999999999999983
No 104
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=97.43 E-value=0.00024 Score=59.83 Aligned_cols=53 Identities=32% Similarity=0.432 Sum_probs=40.8
Q ss_pred ChhhhhccCCCeEEEcCCCCCCC---CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 224 PASETLKLKPDGVLFSNGPGDPS---AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 224 ~~~~i~~~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
+++++...++|+||+.||++ +. ..+...+.++++. .++|+.+||.|.++|+.+
T Consensus 52 ~~~~~~~~~~D~vvv~Gg~~-~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 52 TIDEVNPEEYDALVIPGGRA-PEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred ChhhCCHHHCcEEEECCCCC-HHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 34444333689999999976 32 2356788899888 689999999999999975
No 105
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00022 Score=70.00 Aligned_cols=45 Identities=36% Similarity=0.559 Sum_probs=36.1
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
..|||+++||-|+-- ....+..++.+- .++|.||||||||+-...
T Consensus 363 ~adGilvPGGFG~RG-veG~i~Aak~ARen~iP~LGiCLGmQ~AvIE 408 (585)
T KOG2387|consen 363 SADGILVPGGFGDRG-VEGKILAAKWARENKIPFLGICLGMQLAVIE 408 (585)
T ss_pred cCCeEEeCCcccccc-hhHHHHHHHHHHhcCCCeEeeehhhhHHHHH
Confidence 589999999998755 345667777776 699999999999986543
No 106
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=97.16 E-value=0.0016 Score=58.32 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=41.7
Q ss_pred hhhhhccCCCeEEEcCCCCCCC---CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 225 ASETLKLKPDGVLFSNGPGDPS---AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 225 ~~~i~~~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
++++...++|+|+|.||++... +.+...++|+++. .++++.+||-|-++|+.|
T Consensus 83 ~~~~~~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 83 LSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred hhHCCHhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 3444334799999999986432 3467889999888 799999999999999875
No 107
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=97.16 E-value=0.0016 Score=59.13 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=38.0
Q ss_pred cCCCeEEEcCCCCCCC---CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 231 LKPDGVLFSNGPGDPS---AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.+||+|||+||.|... +.+...+.++++. .++|+..||.|-++|..+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 4799999999976443 3456788889888 799999999999987654
No 108
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.16 E-value=0.00068 Score=67.09 Aligned_cols=84 Identities=20% Similarity=0.276 Sum_probs=56.4
Q ss_pred ccEEEEEEc---Cc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC-----ChHHHHHHHHHH-
Q 039151 191 TYRVIAYDF---GI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA-----VPYAVAIVKELL- 259 (279)
Q Consensus 191 ~~~I~viD~---G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~-----~~~~i~~Ir~~~- 259 (279)
+.+|+++-. .+ ..+ ++.|+++|+++..+..-.+ +++. ++|+|+|.||--.-.+ .....+.|+++.
T Consensus 244 ~~~Iava~d~afnFy~~~~-~~~L~~~g~~~~~~~~~~d-~~l~--~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~ 319 (449)
T TIGR00379 244 YVRIAVAQDQAFNFYYQDN-LDALTHNAAELVPFSPLED-TELP--DVDAVYIGGGFPELFAEELSQNQALRDSIKTFIH 319 (449)
T ss_pred CcEEEEEechhhceeHHHH-HHHHHHCCCEEEEECCccC-CCCC--CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 368887753 22 234 4678889998887754211 2332 7899999887621111 122457788887
Q ss_pred CCCCEeeecHHHHHHHHHc
Q 039151 260 GKVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 260 ~~~PILGICLGhQLLa~Al 278 (279)
.+.|++|||-|+|+|++.+
T Consensus 320 ~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 320 QGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred cCCCEEEEcHHHHHHHhhh
Confidence 6899999999999999764
No 109
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=97.16 E-value=0.0056 Score=53.22 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=48.4
Q ss_pred HHHHHHHCCCeEEEEcCC------------------CChhhhhccCCCeEEEcCCCCCCC---CChHHHHHHHHHH-CCC
Q 039151 205 ILRRLASYGCQIIVVPST------------------WPASETLKLKPDGVLFSNGPGDPS---AVPYAVAIVKELL-GKV 262 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~------------------~~~~~i~~~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~-~~~ 262 (279)
..+.|++.|+++.++... .+++++...++|.|+|.||++.+. +.+..+++++++. +++
T Consensus 21 p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~ 100 (196)
T PRK11574 21 TIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGR 100 (196)
T ss_pred HHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCC
Confidence 445666677777764321 122232223699999998875433 2346788899888 799
Q ss_pred CEeeecHHHHHHHH
Q 039151 263 PVFGICMGHQLLGQ 276 (279)
Q Consensus 263 PILGICLGhQLLa~ 276 (279)
++.+||-|..+|+.
T Consensus 101 ~v~aic~G~~~ll~ 114 (196)
T PRK11574 101 IVAAICAAPATVLV 114 (196)
T ss_pred EEEEECHhHHHHHH
Confidence 99999999997543
No 110
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=97.14 E-value=0.00024 Score=59.25 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=43.4
Q ss_pred CCChhhhhccCCCeEEEcCCCCCC---C-CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 222 TWPASETLKLKPDGVLFSNGPGDP---S-AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 222 ~~~~~~i~~~~~DgIiLSgGPGdp---~-~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
+.+++++...+||+|||+||++.+ . +.+...++++++. .++||.+||.|-.+|+.+
T Consensus 27 d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 27 DKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp SEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred CCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 445677766689999999998843 2 3367889999998 799999999999998875
No 111
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.07 E-value=0.00032 Score=69.95 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=50.6
Q ss_pred ccEEEEEEcCchHH--HHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh-----HHHHHHHHHH-CCC
Q 039151 191 TYRVIAYDFGIKHN--ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP-----YAVAIVKELL-GKV 262 (279)
Q Consensus 191 ~~~I~viD~G~k~~--I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~-----~~i~~Ir~~~-~~~ 262 (279)
+.+|+|+.+---.| =++.|+.. -.+...| ..+++. ++|+|+|.||.-...+.. ...+.|+++. .+.
T Consensus 247 ~~~Iav~~~~~~~nf~~~~~L~~~-~~~~f~~---~~~~l~--~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~ 320 (475)
T TIGR00313 247 SIRIGVVRLPRISNFTDFEPLRYE-AFVKFLD---LDDSLT--GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGG 320 (475)
T ss_pred CcEEEEEcCCcccCccChHHHhhC-CCeEEeC---Cccccc--cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCC
Confidence 37899998432111 24566655 1333333 233443 789999977752111111 2356777777 689
Q ss_pred CEeeecHHHHHHHHHc
Q 039151 263 PVFGICMGHQLLGQAL 278 (279)
Q Consensus 263 PILGICLGhQLLa~Al 278 (279)
|++|||-|+|+|+..+
T Consensus 321 pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 321 IVIGICGGYQMLGKEL 336 (475)
T ss_pred cEEEEcHHHHHhhhhh
Confidence 9999999999999853
No 112
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.06 E-value=0.0003 Score=57.49 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=29.2
Q ss_pred cCCCeEEEcCCCCCCCCC---hHHHHHHHHHH-CCCCEeeecHHHH
Q 039151 231 LKPDGVLFSNGPGDPSAV---PYAVAIVKELL-GKVPVFGICMGHQ 272 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~~~---~~~i~~Ir~~~-~~~PILGICLGhQ 272 (279)
.++|.||++||..++... ..-.+.|++++ .++|+||||+|.-
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L~~~g~~~i~~~v~~g~p~LGIClGAy 88 (114)
T cd03144 43 SKTALLVVPGGADLPYCRALNGKGNRRIRNFVRNGGNYLGICAGAY 88 (114)
T ss_pred hCCCEEEECCCChHHHHHHHHhhCcHHHHHHHHCCCcEEEEecCcc
Confidence 478999997644333211 11267788877 6899999999964
No 113
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=96.99 E-value=0.0015 Score=54.49 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=41.8
Q ss_pred ChhhhhccCCCeEEEcCCCCCC---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 224 PASETLKLKPDGVLFSNGPGDP---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 224 ~~~~i~~~~~DgIiLSgGPGdp---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
++++....++|.|||.||++.+ .+.+..+++++++. +++++.+||-|..+|+.|
T Consensus 52 ~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 52 TLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred CHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 3444433479999999988433 23467888999888 789999999999999986
No 114
>PRK04155 chaperone protein HchA; Provisional
Probab=96.98 E-value=0.0026 Score=59.73 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=38.3
Q ss_pred cCCCeEEEcCCCCCCCC---ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 231 LKPDGVLFSNGPGDPSA---VPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~~---~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.+||+|||+||.|...+ .+...++++++. .++||..||.|-++|..+
T Consensus 146 ~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 146 SDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred ccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 58999999999875432 456788899888 799999999999977653
No 115
>PHA03366 FGAM-synthase; Provisional
Probab=96.97 E-value=0.0045 Score=68.67 Aligned_cols=87 Identities=21% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCC--CCCCC-----------hHH
Q 039151 189 SKTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPG--DPSAV-----------PYA 251 (279)
Q Consensus 189 ~~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPG--dp~~~-----------~~~ 251 (279)
..++||+|+-+ |. ...+.++|.+.|+++..|... .....++ .+++||++.||-. |.-.. +..
T Consensus 1026 ~~~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~l-~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~ 1104 (1304)
T PHA03366 1026 DKRHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTFL-DEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAV 1104 (1304)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCcc-ccceEEEEcCCCCCcccccHHHHHHHHhhhchHH
Confidence 45689999998 76 577899999999998877642 2222222 4789999999864 43221 345
Q ss_pred HHHHHHHH--CCCCEeeecH-HHHHHHH
Q 039151 252 VAIVKELL--GKVPVFGICM-GHQLLGQ 276 (279)
Q Consensus 252 i~~Ir~~~--~~~PILGICL-GhQLLa~ 276 (279)
.+.+++++ .+.++||||- |+|+|+.
T Consensus 1105 ~~~~~~f~~r~dt~~LGiCN~G~Q~L~~ 1132 (1304)
T PHA03366 1105 RDALLRFLNRPDTFSLGCGELGCQILFA 1132 (1304)
T ss_pred HHHHHHHHhCCCCeEEEeCcHHHHHHHH
Confidence 56777788 4899999997 9999986
No 116
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.92 E-value=0.0021 Score=54.86 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=41.0
Q ss_pred ChhhhhccCCCeEEEcCCCC-CCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 224 PASETLKLKPDGVLFSNGPG-DPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 224 ~~~~i~~~~~DgIiLSgGPG-dp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
+.+++...++|.|||.||+. +....+...++||++. .++++.+||-|.++|+.|
T Consensus 52 ~~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 52 SLDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred chhHCCHhHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 34444223689999999975 2233456788899888 789999999999999985
No 117
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=96.91 E-value=0.00082 Score=57.19 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=35.5
Q ss_pred cCCCeEEEcCCCCCCCCC-----hHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151 231 LKPDGVLFSNGPGDPSAV-----PYAVAIVKELL-GKVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~~~-----~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al 278 (279)
.++|+|+|.||.-.-.+. ....+.|+++. .+.||+|||=|+|+|+..+
T Consensus 6 ~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 6 PDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 379999997665221211 23557788888 6899999999999999864
No 118
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=96.88 E-value=0.0033 Score=55.42 Aligned_cols=80 Identities=21% Similarity=0.401 Sum_probs=55.6
Q ss_pred cEEEEEEc-CchHHHHHHHHHCC-CeEEEEcCCCChhhhhccCCCeEEEcCCCCCCC----CChHHHHHHHHHH-CCCCE
Q 039151 192 YRVIAYDF-GIKHNILRRLASYG-CQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS----AVPYAVAIVKELL-GKVPV 264 (279)
Q Consensus 192 ~~I~viD~-G~k~~I~r~L~~~G-~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~----~~~~~i~~Ir~~~-~~~PI 264 (279)
++|-|+-+ |.-..=++.|++.+ .++..+.. ++++. ..||+||+||-..-- ......+.+++.. .++|+
T Consensus 1 m~IGVLalQG~v~EH~~~l~~~~~~e~~~Vk~---~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv 75 (194)
T COG0311 1 MKIGVLALQGAVEEHLEALEKAGGAEVVEVKR---PEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPV 75 (194)
T ss_pred CeEEEEEecccHHHHHHHHHhhcCCceEEEcC---HHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCce
Confidence 35666666 65545567788884 77776653 45663 689999988753210 0123567788777 79999
Q ss_pred eeecHHHHHHHH
Q 039151 265 FGICMGHQLLGQ 276 (279)
Q Consensus 265 LGICLGhQLLa~ 276 (279)
||-|-|+-+||.
T Consensus 76 ~GTCAGlIlLak 87 (194)
T COG0311 76 FGTCAGLILLAK 87 (194)
T ss_pred EEechhhhhhhh
Confidence 999999999985
No 119
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=96.86 E-value=0.0054 Score=67.59 Aligned_cols=86 Identities=21% Similarity=0.225 Sum_probs=62.2
Q ss_pred CccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCC--CCCCC-----------hHHH
Q 039151 190 KTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPG--DPSAV-----------PYAV 252 (279)
Q Consensus 190 ~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPG--dp~~~-----------~~~i 252 (279)
.++||+|+-+ |. .....++|.+.|+++..|... ......+ .+++||++.||-+ |+... ....
T Consensus 928 ~~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l-~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~ 1006 (1202)
T TIGR01739 928 PRHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFL-DTFSGLIIGGASGTLDSEVGARALAAALLRNQAFL 1006 (1202)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCch-hheEEEEEcCcCCCCccchHHHHHHHHhhcchHHH
Confidence 4578999998 76 577899999999998887643 1111222 3789999988764 44322 2345
Q ss_pred HHHHHHH-C-CCCEeeecH-HHHHHHH
Q 039151 253 AIVKELL-G-KVPVFGICM-GHQLLGQ 276 (279)
Q Consensus 253 ~~Ir~~~-~-~~PILGICL-GhQLLa~ 276 (279)
+.+++++ + +.++||||- |+|+|+.
T Consensus 1007 ~~~~~f~~r~dtf~LGiCN~G~Q~L~~ 1033 (1202)
T TIGR01739 1007 RDLLTFLNRPDTFSLGFGELGCQLLLA 1033 (1202)
T ss_pred HHHHHHHhCCCceEEEeCcHHHHHHHH
Confidence 6677777 3 899999997 9999986
No 120
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=96.72 E-value=0.0015 Score=57.64 Aligned_cols=66 Identities=23% Similarity=0.436 Sum_probs=44.9
Q ss_pred HHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCC----CChHHHHHHHHHH-CC-CCEeeecHHHHHHHH
Q 039151 206 LRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPS----AVPYAVAIVKELL-GK-VPVFGICMGHQLLGQ 276 (279)
Q Consensus 206 ~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~----~~~~~i~~Ir~~~-~~-~PILGICLGhQLLa~ 276 (279)
.+.|++.|++...|.. .+++. ++||+||+||--..- ......+.||++. .+ +|+||.|-|+-|||.
T Consensus 12 ~~~l~~lg~~~~~Vr~---~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~ 83 (188)
T PF01174_consen 12 IRMLERLGAEVVEVRT---PEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAK 83 (188)
T ss_dssp HHHHHHTTSEEEEE-S---GGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEE
T ss_pred HHHHHHcCCCeEEeCC---HHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhh
Confidence 5678899999987764 45663 689999987752210 0124667888888 55 999999999999975
No 121
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=96.59 E-value=0.0045 Score=61.28 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=53.0
Q ss_pred cEEEEE-E--cCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh------HHHHHHHHHH-
Q 039151 192 YRVIAY-D--FGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP------YAVAIVKELL- 259 (279)
Q Consensus 192 ~~I~vi-D--~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~Ir~~~- 259 (279)
.||+|- | |.+ ..| ++.|++. +++.-+..- ..+++. ++|+|+|.||- |.... ...+.|+++.
T Consensus 234 ~~iavA~D~AF~FyY~en-l~~L~~~-aelv~fSPl-~~~~lp--~~D~l~lpGG~--~e~~~~~L~~n~~~~~i~~~~~ 306 (433)
T PRK13896 234 PTVAVARDAAFCFRYPAT-IERLRER-ADVVTFSPV-AGDPLP--DCDGVYLPGGY--PELHADALADSPALDELADRAA 306 (433)
T ss_pred CeEEEEEcCccceeCHHH-HHHHHhc-CcEEEEcCC-CCCCCC--CCCEEEeCCCc--hhhHHHHHHhCCcHHHHHHHHH
Confidence 578765 3 443 445 5788887 766655331 122343 68999998776 33211 1236777777
Q ss_pred CCCCEeeecHHHHHHHHHc
Q 039151 260 GKVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 260 ~~~PILGICLGhQLLa~Al 278 (279)
.+.|++|||-|+|+|++.+
T Consensus 307 ~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 307 DGLPVLGECGGLMALAESL 325 (433)
T ss_pred CCCcEEEEehHHHHhhccc
Confidence 6899999999999998754
No 122
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=96.51 E-value=0.0046 Score=52.56 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=41.0
Q ss_pred ChhhhhccCCCeEEEcCCCCCC---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 224 PASETLKLKPDGVLFSNGPGDP---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 224 ~~~~i~~~~~DgIiLSgGPGdp---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
++++....++|.|||.||+..+ .+.+..+++++++. +++|+.+||-|-.+|+.|
T Consensus 55 ~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 55 SLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred CHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 4444333479999999886432 23456788999888 789999999999999976
No 123
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=96.45 E-value=0.0037 Score=53.90 Aligned_cols=47 Identities=28% Similarity=0.487 Sum_probs=38.6
Q ss_pred cCCCeEEEcCCCCCCCC---ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 231 LKPDGVLFSNGPGDPSA---VPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~~---~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.++|+|+++||...|.. .+..++++|++. .++||..||.|-++|+.+
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~a 115 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAA 115 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhcc
Confidence 47999999999444432 257889999998 799999999999999875
No 124
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.36 E-value=0.0084 Score=59.89 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=53.2
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHC-CCeEEEEcCCCChhhhhccCCCeEEEcCCCCC-CCCChH-----HHHHHHHHH-
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASY-GCQIIVVPSTWPASETLKLKPDGVLFSNGPGD-PSAVPY-----AVAIVKELL- 259 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~-G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGd-p~~~~~-----~i~~Ir~~~- 259 (279)
...+|+++.+-. ...=+..|... +.++.+++... ++. +||.+||. |+.+ .++... .-+.|.+..
T Consensus 250 ~~i~Iav~~lp~isNFtD~dpL~~~~~v~v~~v~~~~---~l~--~~dlvIlP-Gsk~t~~DL~~lr~~g~d~~i~~~~~ 323 (486)
T COG1492 250 RAIRIAVIRLPRISNFTDFDPLRAEPDVRVRFVKPGS---DLR--DADLVILP-GSKNTIADLKILREGGMDEKILEYAR 323 (486)
T ss_pred CceEEEEecCCCccccccchhhhcCCCeEEEEeccCC---CCC--CCCEEEeC-CCcccHHHHHHHHHcCHHHHHHHHHh
Confidence 346899988743 33344556554 88888887543 332 48999984 4443 233221 222444444
Q ss_pred CCCCEeeecHHHHHHHHHc
Q 039151 260 GKVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 260 ~~~PILGICLGhQLLa~Al 278 (279)
.+.|++|||=|+|||...+
T Consensus 324 ~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 324 KGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred CCCCEEEEcchHHhhhhhh
Confidence 5899999999999998753
No 125
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.33 E-value=0.01 Score=50.83 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=39.3
Q ss_pred cCCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 231 LKPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.++|.||+.||++.. .+.+..++.|+++. +++++.+||-|-++|+.|
T Consensus 63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 378999999987643 34567889999888 689999999999999975
No 126
>PRK11249 katE hydroperoxidase II; Provisional
Probab=96.13 E-value=0.018 Score=60.54 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=62.1
Q ss_pred ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCCC---C
Q 039151 191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDPS---A 247 (279)
Q Consensus 191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp~---~ 247 (279)
+++|+|+=+ |+. ..+.+.|.+.|+.+.++.... ++++.....+|+|+|.||+..+. .
T Consensus 597 gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~ 676 (752)
T PRK11249 597 GRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLAD 676 (752)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhh
Confidence 467776654 553 356778888999998874321 11111123699999999876543 2
Q ss_pred ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 248 VPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 248 ~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
....+.+|+++. ..++|..||-|.+||+.|
T Consensus 677 d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 677 NGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred CHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 456889999998 689999999999999865
No 127
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.10 E-value=0.014 Score=50.40 Aligned_cols=47 Identities=30% Similarity=0.415 Sum_probs=38.2
Q ss_pred cCCCeEEEcCCCCCCC-----CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 231 LKPDGVLFSNGPGDPS-----AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~-----~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.++|.|||+||++.+. ..+..+++++++. .++++.+||-|..+|+.+
T Consensus 68 ~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 68 PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 3799999998876532 2456788888888 789999999999999875
No 128
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=95.90 E-value=0.0073 Score=54.72 Aligned_cols=69 Identities=25% Similarity=0.309 Sum_probs=47.3
Q ss_pred HHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC------ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 207 RRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA------VPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 207 r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~------~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
+..+.+|+.+++++.+.. +.+....+|-+++.||- |-+. .....+.++.++ .++|+|.||-|.|+|.+.
T Consensus 28 ~ra~~rgi~v~i~~vsl~-d~~~~~~~Dl~~~GGgq-D~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y 103 (250)
T COG3442 28 QRAEKRGIKVEIVEVSLT-DTFPDDSYDLYFLGGGQ-DYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY 103 (250)
T ss_pred HHHHhcCCceEEEEeecC-CCCCcccccEEEecCch-HHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence 457789999999886532 12222478999885554 3221 112345677777 699999999999999864
No 129
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=95.50 E-value=0.053 Score=49.52 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=36.6
Q ss_pred ccCCCeEEEcCC-CCCCC--CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 230 KLKPDGVLFSNG-PGDPS--AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 230 ~~~~DgIiLSgG-PGdp~--~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
...||.|+|+|| ||.-. +++...+.+|+.. .+++|..||.|--++..+
T Consensus 65 ~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a 116 (247)
T KOG2764|consen 65 DSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAA 116 (247)
T ss_pred cccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhh
Confidence 368999999999 88643 3556778888877 699999999986444433
No 130
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=95.42 E-value=0.046 Score=49.90 Aligned_cols=83 Identities=12% Similarity=0.240 Sum_probs=54.6
Q ss_pred cEEEEEEcCc--------hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHH
Q 039151 192 YRVIAYDFGI--------KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKE 257 (279)
Q Consensus 192 ~~I~viD~G~--------k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~ 257 (279)
++|++|-.-. ..++.+.+.+.|++++.+....+..+.. .+.|+|+++||- .... ....+.|++
T Consensus 32 ~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l-~~ad~I~v~GGn--t~~l~~~l~~~gl~~~l~~ 108 (233)
T PRK05282 32 RKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAI-ENAEAIFVGGGN--TFQLLKQLYERGLLAPIRE 108 (233)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHH-hcCCEEEECCcc--HHHHHHHHHHCCcHHHHHH
Confidence 4677776522 2346677888999988775432222212 379999998874 2211 124566777
Q ss_pred HH-CCCCEeeecHHHHHHHHH
Q 039151 258 LL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 258 ~~-~~~PILGICLGhQLLa~A 277 (279)
++ +++|+.|.|-|.-+++..
T Consensus 109 ~~~~G~~~~G~SAGAii~~~~ 129 (233)
T PRK05282 109 AVKNGTPYIGWSAGANVAGPT 129 (233)
T ss_pred HHHCCCEEEEECHHHHhhhcc
Confidence 77 689999999999887653
No 131
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.04 E-value=0.049 Score=46.30 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=37.6
Q ss_pred CCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 232 KPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 232 ~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.+|.|||.||++.. ...+..+++++++. +++|+.+||-|..+|+.+
T Consensus 62 ~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 62 DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 69999999987532 23466888899888 689999999999999875
No 132
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=95.04 E-value=0.062 Score=49.63 Aligned_cols=73 Identities=26% Similarity=0.440 Sum_probs=48.8
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChhhhhc--cCCCeEEEcCCCCCCCCCh--HHHH-HHHHHH------CCCCEeeecHH
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPASETLK--LKPDGVLFSNGPGDPSAVP--YAVA-IVKELL------GKVPVFGICMG 270 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~~i~~--~~~DgIiLSgGPGdp~~~~--~~i~-~Ir~~~------~~~PILGICLG 270 (279)
..++++.++.-|++|.-+.++.+.+.+.. .-..||+++|| +..... ...+ ...+.+ +..|+.|||||
T Consensus 79 AASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGG--wak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLG 156 (340)
T KOG1559|consen 79 AASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGG--WAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLG 156 (340)
T ss_pred HHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCc--ccccccHHHHHHHHHHHHHhccCCccccchhhhhhh
Confidence 46788888889999988888776444321 24789999988 333321 1222 122222 25799999999
Q ss_pred HHHHHH
Q 039151 271 HQLLGQ 276 (279)
Q Consensus 271 hQLLa~ 276 (279)
..+|..
T Consensus 157 FE~lsm 162 (340)
T KOG1559|consen 157 FELLSM 162 (340)
T ss_pred HHHHHH
Confidence 999875
No 133
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=94.66 E-value=0.16 Score=44.78 Aligned_cols=84 Identities=13% Similarity=0.223 Sum_probs=56.0
Q ss_pred ccEEEEEEcCc------hHHHHHHHHHCCCeEEEEcCCC--Chhhhhc--cCCCeEEEcCCCCCCCCC------hHHHHH
Q 039151 191 TYRVIAYDFGI------KHNILRRLASYGCQIIVVPSTW--PASETLK--LKPDGVLFSNGPGDPSAV------PYAVAI 254 (279)
Q Consensus 191 ~~~I~viD~G~------k~~I~r~L~~~G~~v~vvp~~~--~~~~i~~--~~~DgIiLSgGPGdp~~~------~~~i~~ 254 (279)
..+|++|.... -..+.+.+.+.|+++..++.-. +.+++.+ .+.|+|+++| ||+... ....+.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~G--G~~~~~~~~l~~t~~~~~ 106 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGG--GNQLRLLSVLRETPLLDA 106 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcC--CcHHHHHHHHHhCChHHH
Confidence 35788887743 2456678888999988765421 1122211 4799999987 455432 124445
Q ss_pred HHHHH-CCCCEeeecHHHHHHHH
Q 039151 255 VKELL-GKVPVFGICMGHQLLGQ 276 (279)
Q Consensus 255 Ir~~~-~~~PILGICLGhQLLa~ 276 (279)
|++.+ ++.|+.|.|-|..+++.
T Consensus 107 i~~~~~~G~v~~G~SAGA~~~~~ 129 (210)
T cd03129 107 ILKRVARGVVIGGTSAGAAVMGE 129 (210)
T ss_pred HHHHHHcCCeEEEcCHHHHHhhh
Confidence 55555 68999999999999986
No 134
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=94.42 E-value=0.06 Score=45.31 Aligned_cols=47 Identities=26% Similarity=0.406 Sum_probs=37.2
Q ss_pred cCCCeEEEcCCCC-C-CCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 231 LKPDGVLFSNGPG-D-PSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 231 ~~~DgIiLSgGPG-d-p~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
..+|.||++||++ . ....+..++.+++.. .+.++.+||-|..+|+.|
T Consensus 60 ~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 60 PDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp SCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred ccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 4799999999998 1 223356788888888 689999999999999986
No 135
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=93.90 E-value=0.16 Score=47.58 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=36.9
Q ss_pred cCCCeEEEcCCCCCC-CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 231 LKPDGVLFSNGPGDP-SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp-~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.++|.||++||++.. ...+..+++|++.. .+++|.+||-|.-+||.|
T Consensus 74 ~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 74 DRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred CCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 378999998876422 22456788898888 689999999999999875
No 136
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=93.80 E-value=0.15 Score=43.70 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=37.6
Q ss_pred CCCeEEEcCCCCCC-CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 232 KPDGVLFSNGPGDP-SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 232 ~~DgIiLSgGPGdp-~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
++|.|||.||++.. ...+..+++|++.. +++.|.+||-|..+|+.+
T Consensus 64 ~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 64 PLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 68999998886533 33467889999888 689999999999999875
No 137
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=91.28 E-value=0.27 Score=46.56 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=33.6
Q ss_pred ChhhhhccCCCeEEEcCCCCC---CCCChH---HHHHHHHHH-CCCCEeeecHHHHHH
Q 039151 224 PASETLKLKPDGVLFSNGPGD---PSAVPY---AVAIVKELL-GKVPVFGICMGHQLL 274 (279)
Q Consensus 224 ~~~~i~~~~~DgIiLSgGPGd---p~~~~~---~i~~Ir~~~-~~~PILGICLGhQLL 274 (279)
+++++...++||+||+|.|=. ..+... ..+.+...- .-...|.||.|.|.-
T Consensus 91 ~f~~ik~~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAa 148 (300)
T TIGR01001 91 TFEAVKDRKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAG 148 (300)
T ss_pred CHHHHhcCCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 456676678999999988853 222322 222233332 468999999999983
No 138
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=90.80 E-value=0.14 Score=48.42 Aligned_cols=89 Identities=20% Similarity=0.211 Sum_probs=44.5
Q ss_pred CccEEEEEEc-Cch----HHHHHHHHHCCCeEE--EEc-C-----CC----------ChhhhhccCCCeEEEcCCCCC--
Q 039151 190 KTYRVIAYDF-GIK----HNILRRLASYGCQII--VVP-S-----TW----------PASETLKLKPDGVLFSNGPGD-- 244 (279)
Q Consensus 190 ~~~~I~viD~-G~k----~~I~r~L~~~G~~v~--vvp-~-----~~----------~~~~i~~~~~DgIiLSgGPGd-- 244 (279)
..++|+|+++ --| .-++|.|......|. .+. . ++ +++++....+||+||+|.|=.
T Consensus 33 rpL~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l 112 (298)
T PF04204_consen 33 RPLKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQL 112 (298)
T ss_dssp --EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS
T ss_pred cceEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCC
Confidence 4578999987 333 235555554444443 332 1 12 234455568999999988853
Q ss_pred -CCCChH---HHHHHHHHH-CCCCEeeecHHHHH-HHHHc
Q 039151 245 -PSAVPY---AVAIVKELL-GKVPVFGICMGHQL-LGQAL 278 (279)
Q Consensus 245 -p~~~~~---~i~~Ir~~~-~~~PILGICLGhQL-La~Al 278 (279)
..+.+. ..+.+..+- ...+.|.||.|.|. |..-+
T Consensus 113 ~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~y 152 (298)
T PF04204_consen 113 PFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFY 152 (298)
T ss_dssp -GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHc
Confidence 222322 222233332 47899999999998 44433
No 139
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=89.36 E-value=0.71 Score=40.61 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=43.9
Q ss_pred HHH-HHHHHC--CCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC----ChHHHHHHHHHH--CCCCEeeecHHHHHH
Q 039151 204 NIL-RRLASY--GCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA----VPYAVAIVKELL--GKVPVFGICMGHQLL 274 (279)
Q Consensus 204 ~I~-r~L~~~--G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~----~~~~i~~Ir~~~--~~~PILGICLGhQLL 274 (279)
|++ |++.+- +..+.+.+.. +++++. ++|++||+||-...-. .....+-+.++. ..+|++|-|-||-+|
T Consensus 28 N~~~~c~~en~y~Ik~~~~tVK-T~~D~a--q~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~L 104 (226)
T KOG3210|consen 28 NHVEKCIVENRYEIKLSVMTVK-TKNDLA--QCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYL 104 (226)
T ss_pred HHHHHhhccCcceEEEEEEeec-CHHHHh--hCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhh
Confidence 444 344443 4555566654 456664 7999999887643211 112334455555 369999999999988
Q ss_pred HHH
Q 039151 275 GQA 277 (279)
Q Consensus 275 a~A 277 (279)
+.-
T Consensus 105 S~q 107 (226)
T KOG3210|consen 105 SQQ 107 (226)
T ss_pred hhh
Confidence 754
No 140
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=88.65 E-value=2.1 Score=42.71 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=56.6
Q ss_pred cEEEEEE---cCc-hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC-------ChHHHHHHHHHH-
Q 039151 192 YRVIAYD---FGI-KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA-------VPYAVAIVKELL- 259 (279)
Q Consensus 192 ~~I~viD---~G~-k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~-------~~~~i~~Ir~~~- 259 (279)
.||+|.. |-+ ...-++.|++.|++++.+..-.+ +++. .+.|+|.|.||- |+. .....+.|+++.
T Consensus 246 ~rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D-~~lP-~~~D~vYlgGGY--PElfA~~L~~n~~~~~~i~~~~~ 321 (451)
T COG1797 246 VRIAVARDAAFNFYYPENLELLREAGAELVFFSPLAD-EELP-PDVDAVYLGGGY--PELFAEELSANESMRRAIKAFAA 321 (451)
T ss_pred ceEEEEecchhccccHHHHHHHHHCCCEEEEeCCcCC-CCCC-CCCCEEEeCCCC--hHHHHHHHhhCHHHHHHHHHHHH
Confidence 6888764 333 23346899999999887753222 2333 358999997663 542 234667788888
Q ss_pred CCCCEeeecHHHHHHHHHc
Q 039151 260 GKVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 260 ~~~PILGICLGhQLLa~Al 278 (279)
.++|++|=|=|.--|+..+
T Consensus 322 ~G~piyaECGGlMYL~~~l 340 (451)
T COG1797 322 AGKPIYAECGGLMYLGESL 340 (451)
T ss_pred cCCceEEecccceeehhhe
Confidence 6899999999987776543
No 141
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=88.61 E-value=2.4 Score=37.86 Aligned_cols=84 Identities=15% Similarity=0.288 Sum_probs=54.9
Q ss_pred ccEEEEEEcCc------hHHHHHHHHHCCCe-EEEEcCCC----Chhhhhc--cCCCeEEEcCCCCCCCCC------hHH
Q 039151 191 TYRVIAYDFGI------KHNILRRLASYGCQ-IIVVPSTW----PASETLK--LKPDGVLFSNGPGDPSAV------PYA 251 (279)
Q Consensus 191 ~~~I~viD~G~------k~~I~r~L~~~G~~-v~vvp~~~----~~~~i~~--~~~DgIiLSgGPGdp~~~------~~~ 251 (279)
+.+|++|.... ...+.+.+.+.|++ +.++.... +.+++.+ .+.|+|+++|| |+... ...
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG--~~~~~~~~l~~t~l 106 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGG--DQLRITSALGGTPL 106 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCC--cHHHHHHHHcCChH
Confidence 45899998853 34466778888985 55554321 1111111 47999999876 44321 235
Q ss_pred HHHHHHHH-CCCCEeeecHHHHHHHH
Q 039151 252 VAIVKELL-GKVPVFGICMGHQLLGQ 276 (279)
Q Consensus 252 i~~Ir~~~-~~~PILGICLGhQLLa~ 276 (279)
.+.|++.+ .+.|+.|.--|.-+++.
T Consensus 107 ~~~l~~~~~~G~v~~G~SAGA~i~~~ 132 (217)
T cd03145 107 LDALRKVYRGGVVIGGTSAGAAVMSD 132 (217)
T ss_pred HHHHHHHHHcCCEEEEccHHHHhhhh
Confidence 56788777 78999999988888764
No 142
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=86.38 E-value=0.46 Score=31.04 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=25.0
Q ss_pred CccccCCCHHHHHHHcCceEEecCchHH-HHHHhhh
Q 039151 93 SNWRCAETLGNYLAERNIMGIYDVDTRA-ITRRLRQ 127 (279)
Q Consensus 93 s~~~~~~sl~~~L~~~~ipgi~gvDTRa-Lt~~iR~ 127 (279)
+.| +...|.+||++||||.=.+..||. |.+.+|+
T Consensus 2 dtW-s~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 2 DTW-SDSDLKSWLKSHGIPVPKSAKTRDELLKLAKK 36 (38)
T ss_pred CCC-CHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence 345 356799999999998777776774 6666664
No 143
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=85.79 E-value=1.1 Score=37.67 Aligned_cols=69 Identities=13% Similarity=0.226 Sum_probs=45.2
Q ss_pred HHHHHHHHCCCeEEEEcCCC-Chhhhhc--cCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CCCCEeeecHHHHH
Q 039151 204 NILRRLASYGCQIIVVPSTW-PASETLK--LKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GKVPVFGICMGHQL 273 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~-~~~~i~~--~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~~PILGICLGhQL 273 (279)
.+.+.|.+.|+++..++... +.+++.+ .+.|+|+++|| |+... ....+.|++++ ++.|+.|.--|.-+
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG--~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGG--DTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAMI 81 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S---HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHHC
T ss_pred HHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCC--CHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHhh
Confidence 45678899999998887654 2222221 37999999876 55432 23566788887 67999999888755
Q ss_pred H
Q 039151 274 L 274 (279)
Q Consensus 274 L 274 (279)
+
T Consensus 82 ~ 82 (154)
T PF03575_consen 82 L 82 (154)
T ss_dssp T
T ss_pred c
Confidence 4
No 144
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=81.86 E-value=7.1 Score=35.84 Aligned_cols=84 Identities=7% Similarity=0.169 Sum_probs=54.2
Q ss_pred ccEEEEEEcCc------hHHHHHHHHHCCCe-EEEEcCCC----Chhhhhc--cCCCeEEEcCCCCCCCC------ChHH
Q 039151 191 TYRVIAYDFGI------KHNILRRLASYGCQ-IIVVPSTW----PASETLK--LKPDGVLFSNGPGDPSA------VPYA 251 (279)
Q Consensus 191 ~~~I~viD~G~------k~~I~r~L~~~G~~-v~vvp~~~----~~~~i~~--~~~DgIiLSgGPGdp~~------~~~~ 251 (279)
..||++|-... ...+.+.|+++|++ +.+++... +.+++.+ .+.|+|+++||- ... ....
T Consensus 28 ~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGn--q~~l~~~l~~t~l 105 (250)
T TIGR02069 28 DAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGD--QLRITSLLGDTPL 105 (250)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCC--HHHHHHHHcCCcH
Confidence 35888886532 23466778889994 66665421 1112111 479999999874 221 1234
Q ss_pred HHHHHHHH-CCCCEeeecHHHHHHHH
Q 039151 252 VAIVKELL-GKVPVFGICMGHQLLGQ 276 (279)
Q Consensus 252 i~~Ir~~~-~~~PILGICLGhQLLa~ 276 (279)
.+.|++++ ++.|+.|.--|.-+|+.
T Consensus 106 ~~~l~~~~~~G~vi~G~SAGA~i~~~ 131 (250)
T TIGR02069 106 LDRLRKRVHEGIILGGTSAGAAVMSD 131 (250)
T ss_pred HHHHHHHHHcCCeEEEccHHHHhccc
Confidence 56787777 68999999999887753
No 145
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.31 E-value=2.7 Score=35.48 Aligned_cols=37 Identities=30% Similarity=0.484 Sum_probs=24.2
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH---CCCCEeeecH
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL---GKVPVFGICM 269 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~---~~~PILGICL 269 (279)
..|.|+|.||-.-|.- ....+-+|+++ .++|+.|+|+
T Consensus 85 ~aDvvVLlGGLaMP~~-gv~~d~~kel~ee~~~kkliGvCf 124 (154)
T COG4090 85 SADVVVLLGGLAMPKI-GVTPDDAKELLEELGNKKLIGVCF 124 (154)
T ss_pred cccEEEEEcccccCcC-CCCHHHHHHHHHhcCCCceEEeeH
Confidence 4899999999765642 11223333333 5679999996
No 146
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=80.55 E-value=2 Score=41.82 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=33.8
Q ss_pred cCCCeEEEcCCCCCCCCC---hHHHHHHHHHH-CCCCEeeecHHHHHH
Q 039151 231 LKPDGVLFSNGPGDPSAV---PYAVAIVKELL-GKVPVFGICMGHQLL 274 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~~~---~~~i~~Ir~~~-~~~PILGICLGhQLL 274 (279)
.+++.+|+.||...|... ....+.||+++ .+.-.||||.|.-.-
T Consensus 48 ~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~a 95 (367)
T PF09825_consen 48 SKCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYA 95 (367)
T ss_pred cCCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhh
Confidence 368899999888666531 23478899999 688899999997653
No 147
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=80.45 E-value=4.4 Score=38.98 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=36.2
Q ss_pred CCCeEEEcCCCCCCCC--ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 232 KPDGVLFSNGPGDPSA--VPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~--~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.+|-+++.+|-+.... .+...+++|+.. .+.++-|||-|.-+||.|
T Consensus 76 ~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 76 PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 4788888666544322 255889999998 699999999999999986
No 148
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.83 E-value=6.9 Score=36.52 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=46.8
Q ss_pred cEEEEEEc-Cc------hHHHHHHHHHCCCeEEEEcCCCC----h-----hhhhccCCCeEEEcCCCCCCCCChHHHHHH
Q 039151 192 YRVIAYDF-GI------KHNILRRLASYGCQIIVVPSTWP----A-----SETLKLKPDGVLFSNGPGDPSAVPYAVAIV 255 (279)
Q Consensus 192 ~~I~viD~-G~------k~~I~r~L~~~G~~v~vvp~~~~----~-----~~i~~~~~DgIiLSgGPGdp~~~~~~i~~I 255 (279)
|||+++-. +- ...+.++|+++|+++.+.+.... . .++...++|.+|.-||=|. .++.+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT------lL~a~ 74 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGT------ILRIE 74 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHH------HHHHH
Confidence 46666644 32 23477788899999988643210 0 1222236899999988663 34555
Q ss_pred HHHH-CCCCEeeecHHH
Q 039151 256 KELL-GKVPVFGICMGH 271 (279)
Q Consensus 256 r~~~-~~~PILGICLGh 271 (279)
+ .. .++|++||=.|+
T Consensus 75 ~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 75 H-KTKKDIPILGINMGT 90 (277)
T ss_pred H-hcCCCCeEEEEeCCC
Confidence 6 44 589999998886
No 149
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=76.76 E-value=1 Score=38.49 Aligned_cols=38 Identities=26% Similarity=0.484 Sum_probs=24.6
Q ss_pred cCCCeEEEcCCCCCCC---CChHHHHHHHHHHCCCCEeeecH
Q 039151 231 LKPDGVLFSNGPGDPS---AVPYAVAIVKELLGKVPVFGICM 269 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~~~~PILGICL 269 (279)
.++|.|+|.||---|. +.+...+.|.++..++ +.|||+
T Consensus 79 ~~~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~~~-iiGiCF 119 (147)
T PF09897_consen 79 PHPDVVVLMGGLAMPKSGVTPEDVNELIKKISPKK-IIGICF 119 (147)
T ss_dssp S-EEEEEEEGGGGSTTTS--HHHHHHHHHHHEEEE-EEEEEE
T ss_pred CCCCEEEEEcccccCCCCCCHHHHHHHHHHhCcCC-EEEEeh
Confidence 3699999999955444 3344555566665333 999996
No 150
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=76.31 E-value=9.3 Score=41.49 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=52.7
Q ss_pred ccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCCCChhhhhc-----cCCCeEEEcCCCC--CCCC-----------Ch
Q 039151 191 TYRVIAYDF-GI--KHNILRRLASYGCQIIVVPSTWPASETLK-----LKPDGVLFSNGPG--DPSA-----------VP 249 (279)
Q Consensus 191 ~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~-----~~~DgIiLSgGPG--dp~~-----------~~ 249 (279)
.+||+|+.= |+ ...+.-++...|++..=|.. .+|++ .++-||...||-- |.-. .+
T Consensus 1058 ~PkVAilREeGvNg~rEMa~af~~AgF~~~DVtm----tDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne 1133 (1320)
T KOG1907|consen 1058 APKVAILREEGVNGDREMAAAFYAAGFETVDVTM----TDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNE 1133 (1320)
T ss_pred CCceEEeeccccccHHHHHHHHHHcCCceeeeee----ehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeCh
Confidence 469999975 66 34577788888987653321 23321 3688999998852 2211 12
Q ss_pred HHHHHHHHHH--CCCCEeeecHHHHHHHH
Q 039151 250 YAVAIVKELL--GKVPVFGICMGHQLLGQ 276 (279)
Q Consensus 250 ~~i~~Ir~~~--~~~PILGICLGhQLLa~ 276 (279)
.......++. .+.=-||||-|+|+|++
T Consensus 1134 ~v~~QF~~F~~R~DtFslGiCNGCQlms~ 1162 (1320)
T KOG1907|consen 1134 SVRSQFEAFFNRQDTFSLGICNGCQLMSR 1162 (1320)
T ss_pred hHHHHHHHHhcCCCceeeecccHhHHHHH
Confidence 3344444555 36677999999999986
No 151
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=75.78 E-value=2.6 Score=43.24 Aligned_cols=73 Identities=14% Similarity=0.237 Sum_probs=46.5
Q ss_pred EEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeecHHHHH
Q 039151 196 AYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGICMGHQL 273 (279)
Q Consensus 196 viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGICLGhQL 273 (279)
|+|+--..|++|+|.++|++|.++.|..+-.+-.....|--+ ......++.|++.- .++=++|.|+|--+
T Consensus 230 IlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv--------~~i~~Ald~V~~~tG~~~vnl~GyC~GGtl 301 (560)
T TIGR01839 230 IFDLSPEKSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYV--------DALKEAVDAVRAITGSRDLNLLGACAGGLT 301 (560)
T ss_pred eeecCCcchHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHH--------HHHHHHHHHHHHhcCCCCeeEEEECcchHH
Confidence 457766789999999999999999875321111111111000 01134556666665 46789999999998
Q ss_pred HHH
Q 039151 274 LGQ 276 (279)
Q Consensus 274 La~ 276 (279)
++.
T Consensus 302 ~a~ 304 (560)
T TIGR01839 302 CAA 304 (560)
T ss_pred HHH
Confidence 875
No 152
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=75.61 E-value=2.9 Score=39.04 Aligned_cols=50 Identities=26% Similarity=0.448 Sum_probs=32.1
Q ss_pred ChhhhhccCCCeEEEcCCCCC--C-CCChHHHHHHHHHH-----CCCCEeeecHHHHHH
Q 039151 224 PASETLKLKPDGVLFSNGPGD--P-SAVPYAVAIVKELL-----GKVPVFGICMGHQLL 274 (279)
Q Consensus 224 ~~~~i~~~~~DgIiLSgGPGd--p-~~~~~~i~~Ir~~~-----~~~PILGICLGhQLL 274 (279)
+++++.+.++||+||+|.|=. | .+...+ +.+++++ .-.-.|=||.|.|.-
T Consensus 91 tfeeVk~~~FDG~IiTGAPve~l~feeV~YW-~el~~I~eWskt~V~STl~ICWgaqAa 148 (307)
T COG1897 91 TFEEVKDQKFDGLIITGAPVELLPFEEVAYW-EELKQIFEWSKTHVTSTLHICWGAQAA 148 (307)
T ss_pred cHHHHhhcccCceEEeCCcccccCchhhhhH-HHHHHHHHHHhhcchhhhhhHHHHHHH
Confidence 456677779999999988853 2 223332 3333333 235779999999963
No 153
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=74.35 E-value=8.4 Score=30.52 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEEcCC
Q 039151 204 NILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNG 241 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiLSgG 241 (279)
.+...|+..|+++.....+.+.+++. +.+||.|.||..
T Consensus 18 ~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 18 IVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 45567888999997776667766543 468999999865
No 154
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.72 E-value=15 Score=34.67 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=41.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCC-----------------ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCE
Q 039151 203 HNILRRLASYGCQIIVVPSTW-----------------PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPV 264 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~-----------------~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PI 264 (279)
..+.++|.++|+++.+-+... +.+++ ...+|.+|.-||=| -.+...+.+. .++|+
T Consensus 19 ~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~lGGDG------T~L~aa~~~~~~~~Pi 91 (292)
T PRK01911 19 QELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEEL-DGSADMVISIGGDG------TFLRTATYVGNSNIPI 91 (292)
T ss_pred HHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhc-ccCCCEEEEECCcH------HHHHHHHHhcCCCCCE
Confidence 456778889999988754211 00122 12578888888865 3455666665 58999
Q ss_pred eeecHHH
Q 039151 265 FGICMGH 271 (279)
Q Consensus 265 LGICLGh 271 (279)
|||=+|+
T Consensus 92 lGIN~G~ 98 (292)
T PRK01911 92 LGINTGR 98 (292)
T ss_pred EEEecCC
Confidence 9998886
No 155
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.88 E-value=11 Score=35.26 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=41.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCC-----------ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHH
Q 039151 203 HNILRRLASYGCQIIVVPSTW-----------PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMG 270 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~-----------~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLG 270 (279)
..+.++|.++|+++.+-+... +.+++. .++|.+|.-||=| -.+...+.+. .++|+|||=+|
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~iGGDG------T~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIG-QRAQLAIVIGGDG------NMLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhC-cCCCEEEEECCcH------HHHHHHHHhccCCCcEEEEeCC
Confidence 356778999999888754311 112222 2589888888865 3455556665 58999999888
Q ss_pred H
Q 039151 271 H 271 (279)
Q Consensus 271 h 271 (279)
+
T Consensus 76 ~ 76 (272)
T PRK02231 76 N 76 (272)
T ss_pred C
Confidence 4
No 156
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=72.31 E-value=24 Score=35.40 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=26.6
Q ss_pred ccEEEEEEcCch-HHHHHHHHHCCCeEEEEcC
Q 039151 191 TYRVIAYDFGIK-HNILRRLASYGCQIIVVPS 221 (279)
Q Consensus 191 ~~~I~viD~G~k-~~I~r~L~~~G~~v~vvp~ 221 (279)
+++|+|+-+|.. .+..+.|.++|++|++...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~ 38 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDD 38 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcC
Confidence 468999999874 5789999999999999864
No 157
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.18 E-value=9.8 Score=35.75 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=46.4
Q ss_pred EEEEEEc-Cc-----hHHHHHHHHHCCCeEEEEcCCCC--------hhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHH
Q 039151 193 RVIAYDF-GI-----KHNILRRLASYGCQIIVVPSTWP--------ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKEL 258 (279)
Q Consensus 193 ~I~viD~-G~-----k~~I~r~L~~~G~~v~vvp~~~~--------~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~ 258 (279)
+|.++-. +- ...+.++|.++|+++.+-+.... .+++ ..++|.+|.-||=| -.+...+.+
T Consensus 12 ~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi~iGGDG------T~L~aa~~~ 84 (287)
T PRK14077 12 KIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDEL-FKISDFLISLGGDG------TLISLCRKA 84 (287)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhc-ccCCCEEEEECCCH------HHHHHHHHh
Confidence 4777643 21 24567788889998887543111 1222 12589888888865 345666666
Q ss_pred H-CCCCEeeecHHH
Q 039151 259 L-GKVPVFGICMGH 271 (279)
Q Consensus 259 ~-~~~PILGICLGh 271 (279)
. .++|+|||=+|+
T Consensus 85 ~~~~~PilGIN~G~ 98 (287)
T PRK14077 85 AEYDKFVLGIHAGH 98 (287)
T ss_pred cCCCCcEEEEeCCC
Confidence 5 589999999886
No 158
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.33 E-value=11 Score=35.84 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=46.3
Q ss_pred EEEEEEc-Cc------hHHHHHHHHHCCCeEEEEcCCCC-------------------h-hhhhccCCCeEEEcCCCCCC
Q 039151 193 RVIAYDF-GI------KHNILRRLASYGCQIIVVPSTWP-------------------A-SETLKLKPDGVLFSNGPGDP 245 (279)
Q Consensus 193 ~I~viD~-G~------k~~I~r~L~~~G~~v~vvp~~~~-------------------~-~~i~~~~~DgIiLSgGPGdp 245 (279)
+|+++-. +- ...+.++|.++|+++.+.+.... . +++ ..++|.+|.-||=|
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGDG-- 83 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLGGDG-- 83 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEEEcCCH--
Confidence 4776643 21 24577788899999887643110 0 111 23578888888865
Q ss_pred CCChHHHHHHHHHH-CCCCEeeecHHH
Q 039151 246 SAVPYAVAIVKELL-GKVPVFGICMGH 271 (279)
Q Consensus 246 ~~~~~~i~~Ir~~~-~~~PILGICLGh 271 (279)
-.+...+.+. .++|+|||=+|+
T Consensus 84 ----T~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 84 ----TILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred ----HHHHHHHHhccCCCcEEEEecCC
Confidence 3456666655 589999998885
No 159
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=71.20 E-value=6.8 Score=37.35 Aligned_cols=48 Identities=25% Similarity=0.469 Sum_probs=33.2
Q ss_pred CccEEEEEEcCchHHHHHHHHHCCCeEEEE-cCC----------------------CChhhhhccCCCeEEEcCCC
Q 039151 190 KTYRVIAYDFGIKHNILRRLASYGCQIIVV-PST----------------------WPASETLKLKPDGVLFSNGP 242 (279)
Q Consensus 190 ~~~~I~viD~G~k~~I~r~L~~~G~~v~vv-p~~----------------------~~~~~i~~~~~DgIiLSgGP 242 (279)
++-+|+++|+|. ++.|.++|.++.++ |.. -+++.|.+.+||-||++ |+
T Consensus 57 nPekVvv~D~ga----LD~ld~lGve~~~v~~~~~~P~yL~~y~~dky~nvGtlfEPD~Eai~a~kPdLIIig-gR 127 (320)
T COG4607 57 NPEKVVVLDLGA----LDTLDALGVEVVAVGPGKNLPAYLQKYKDDKYANVGTLFEPDYEAIAAAKPDLIIIG-GR 127 (320)
T ss_pred CCceEEEecchh----hhhHHHhCCccccccCCCCccHHHHHhccCCccccCcccCCCHHHHHhcCCCEEEEC-cH
Confidence 456899999998 56677788887776 211 13444556799999985 44
No 160
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.29 E-value=14 Score=34.88 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=45.7
Q ss_pred EEEEEEc-Cc------hHHHHHHHHHCCCeEEEEcCCCC----------------hhhhhccCCCeEEEcCCCCCCCCCh
Q 039151 193 RVIAYDF-GI------KHNILRRLASYGCQIIVVPSTWP----------------ASETLKLKPDGVLFSNGPGDPSAVP 249 (279)
Q Consensus 193 ~I~viD~-G~------k~~I~r~L~~~G~~v~vvp~~~~----------------~~~i~~~~~DgIiLSgGPGdp~~~~ 249 (279)
+|+++-. +- ...+.++|.++|+++.+-+.... .+++ ..++|.+|.-||=|
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGDG------ 79 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTEL-GQYCDLVAVLGGDG------ 79 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhc-CcCCCEEEEECCcH------
Confidence 4777643 22 23466788899999887542110 1122 12578888888865
Q ss_pred HHHHHHHHHH-CCCCEeeecHHH
Q 039151 250 YAVAIVKELL-GKVPVFGICMGH 271 (279)
Q Consensus 250 ~~i~~Ir~~~-~~~PILGICLGh 271 (279)
-.+...+.+. .++|++||=+|+
T Consensus 80 T~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 80 TFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred HHHHHHHHhcccCCCEEEEecCC
Confidence 3445556555 589999999886
No 161
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=70.21 E-value=5.4 Score=35.18 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=38.7
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecHHHHHHHHH
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICLGhQLLa~A 277 (279)
..+.+.|+....-..+ ++++.+..||+.+|- --||. ....+.+.+...+.+++|+|.|+|-+...
T Consensus 112 GG~~~alRtipv~~~i------a~~i~~~~PdAw~iN--ytNP~--~~vt~a~~r~~~~~k~vGlCh~~~~~~~~ 176 (183)
T PF02056_consen 112 GGFFRALRTIPVMLDI------ARDIEELCPDAWLIN--YTNPM--GIVTEALSRYTPKIKVVGLCHGPQGTRRQ 176 (183)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHTTTSEEEE---SSSH--HHHHHHHHHHSTTSEEEEE-SHHHHHHHH
T ss_pred cHHHHHHhhHHHHHHH------HHHHHHhCCCcEEEe--ccChH--HHHHHHHHHhCCCCCEEEECCCHHHHHHH
Confidence 4566666653211111 345556689999992 12343 23445566555679999999999877554
No 162
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=68.93 E-value=6.7 Score=35.32 Aligned_cols=38 Identities=26% Similarity=0.501 Sum_probs=30.7
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeecH
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGICM 269 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGICL 269 (279)
+.|.|.++-|||+..-..--+...+.+. .++|++|||-
T Consensus 58 dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss 97 (220)
T COG1214 58 DLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS 97 (220)
T ss_pred HCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH
Confidence 5789999999999887666666667654 5999999973
No 163
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=68.82 E-value=13 Score=34.90 Aligned_cols=62 Identities=24% Similarity=0.344 Sum_probs=41.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCC-----------ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHH
Q 039151 203 HNILRRLASYGCQIIVVPSTW-----------PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMG 270 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~-----------~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLG 270 (279)
..+.++|+++|+++.+.+... +.+++ ...+|.+|.-||=| -.++.++.+. .++|+|||=+|
T Consensus 24 ~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDG------t~l~~~~~~~~~~~pilGIn~G 96 (291)
T PRK02155 24 ESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI-GARADLAVVLGGDG------TMLGIGRQLAPYGVPLIGINHG 96 (291)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh-ccCCCEEEEECCcH------HHHHHHHHhcCCCCCEEEEcCC
Confidence 457788889999987754211 11222 23589998888865 3456666665 58999999988
Q ss_pred H
Q 039151 271 H 271 (279)
Q Consensus 271 h 271 (279)
+
T Consensus 97 ~ 97 (291)
T PRK02155 97 R 97 (291)
T ss_pred C
Confidence 6
No 164
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=68.76 E-value=12 Score=28.76 Aligned_cols=44 Identities=11% Similarity=0.297 Sum_probs=29.5
Q ss_pred EEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCC
Q 039151 193 RVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPG 243 (279)
Q Consensus 193 ~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPG 243 (279)
||+|-+ |. .++.++|+++|++|.-+.... +. ..+|++|++|-.-
T Consensus 3 kIAVE~-~L-s~v~~~L~~~GyeVv~l~~~~---~~--~~~daiVvtG~~~ 46 (80)
T PF03698_consen 3 KIAVEE-GL-SNVKEALREKGYEVVDLENEQ---DL--QNVDAIVVTGQDT 46 (80)
T ss_pred eEEecC-Cc-hHHHHHHHHCCCEEEecCCcc---cc--CCcCEEEEECCCc
Confidence 344433 44 478899999999887654221 22 3799999997654
No 165
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.67 E-value=14 Score=34.87 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCC-----------ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHH
Q 039151 203 HNILRRLASYGCQIIVVPSTW-----------PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMG 270 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~-----------~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLG 270 (279)
..+.++|.++|+++.+-+... +.+++ ..++|.+|.-||=| -.+...+.+. .++|++||=+|
T Consensus 24 ~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~lGGDG------T~L~aa~~~~~~~~Pilgin~G 96 (292)
T PRK03378 24 EMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEI-GQQADLAIVVGGDG------NMLGAARVLARYDIKVIGINRG 96 (292)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-CCCCCEEEEECCcH------HHHHHHHHhcCCCCeEEEEECC
Confidence 457778889999988754211 01122 13589999988866 3445555555 48999999988
Q ss_pred H
Q 039151 271 H 271 (279)
Q Consensus 271 h 271 (279)
+
T Consensus 97 ~ 97 (292)
T PRK03378 97 N 97 (292)
T ss_pred C
Confidence 7
No 166
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=67.52 E-value=34 Score=28.43 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=35.8
Q ss_pred cEEEEEEcCc------hHHHHHHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEEcCCC
Q 039151 192 YRVIAYDFGI------KHNILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNGP 242 (279)
Q Consensus 192 ~~I~viD~G~------k~~I~r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiLSgGP 242 (279)
.+|++.-.+. +..+...|+..|++++.+-.+.+.+++. +.++|.|.+|.--
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~ 64 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLY 64 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCcc
Confidence 4566653322 2345567888999999888888877764 4689999998543
No 167
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=65.85 E-value=11 Score=29.48 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=25.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhhh----hccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASET----LKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~i----~~~~~DgIiLSg 240 (279)
..+...|++.|+++..+..+.+.+++ .+.+||.|.+|.
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEc
Confidence 34566777788888888666544443 346888888863
No 168
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.06 E-value=18 Score=34.36 Aligned_cols=62 Identities=16% Similarity=0.285 Sum_probs=41.1
Q ss_pred HHHHHHHHHCCCeEEEEcCCC--------------------ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CC
Q 039151 203 HNILRRLASYGCQIIVVPSTW--------------------PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GK 261 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~--------------------~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~ 261 (279)
..+.++|.++|+++.+-+... +..++ ..++|.+|.-||=| -.+...+.+. .+
T Consensus 20 ~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi~iGGDG------TlL~aar~~~~~~ 92 (305)
T PRK02649 20 EELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGF-DSSMKFAIVLGGDG------TVLSAARQLAPCG 92 (305)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhc-ccCcCEEEEEeCcH------HHHHHHHHhcCCC
Confidence 456778889999987754210 01111 12578888888866 3456666665 58
Q ss_pred CCEeeecHHH
Q 039151 262 VPVFGICMGH 271 (279)
Q Consensus 262 ~PILGICLGh 271 (279)
+|+|||=+|+
T Consensus 93 iPilGIN~G~ 102 (305)
T PRK02649 93 IPLLTINTGH 102 (305)
T ss_pred CcEEEEeCCC
Confidence 9999998874
No 169
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=64.63 E-value=25 Score=29.98 Aligned_cols=69 Identities=25% Similarity=0.265 Sum_probs=45.9
Q ss_pred CccEEEEEEcCc-h-----HHHHHHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEEcCCCCCC-CCChHHHHHHHHH
Q 039151 190 KTYRVIAYDFGI-K-----HNILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNGPGDP-SAVPYAVAIVKEL 258 (279)
Q Consensus 190 ~~~~I~viD~G~-k-----~~I~r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiLSgGPGdp-~~~~~~i~~Ir~~ 258 (279)
.++||++.-.|. . .=+.+.|+..|++|...+...+.+|+. +.+.|.|.+|+=-|.- ..++..++.+|+.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~ 90 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREA 90 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHh
Confidence 467888887775 1 225677899999999888777766653 3589999998544322 2234455555544
No 170
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=64.48 E-value=30 Score=30.37 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=38.0
Q ss_pred HHHHHH-HCCCeEEEEcCC--CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecH
Q 039151 205 ILRRLA-SYGCQIIVVPST--WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICM 269 (279)
Q Consensus 205 I~r~L~-~~G~~v~vvp~~--~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICL 269 (279)
+.+.|+ ..|+++++.... .+.+.+ .++|.||+....++. ..+...+.+++++ ++.+++||..
T Consensus 24 l~~ll~~~~~~~v~~~~~~~~~~~~~L--~~~Dvvv~~~~~~~~-l~~~~~~al~~~v~~Ggglv~lH~ 89 (217)
T PF06283_consen 24 LAQLLEESEGFEVTVTEDPDDLTPENL--KGYDVVVFYNTGGDE-LTDEQRAALRDYVENGGGLVGLHG 89 (217)
T ss_dssp HHHHHHHTTCEEEEECCSGGCTSHHCH--CT-SEEEEE-SSCCG-S-HHHHHHHHHHHHTT-EEEEEGG
T ss_pred HHHHhccCCCEEEEEEeCcccCChhHh--cCCCEEEEECCCCCc-CCHHHHHHHHHHHHcCCCEEEEcc
Confidence 334455 468888876432 233334 489999998777543 2345677788887 7999999973
No 171
>PRK11625 Rho-binding antiterminator; Provisional
Probab=61.70 E-value=23 Score=27.44 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=37.3
Q ss_pred eeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCC
Q 039151 7 NARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGV 68 (279)
Q Consensus 7 ~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi 68 (279)
.-.|.|.||+.++|++.--...---|-.+=-.-.+=|++-.| ||+.||.|.||..=|
T Consensus 25 ~l~l~l~dGe~~~g~A~D~~~~~k~EyL~l~~~g~~~~iRLD-----~I~s~~~~~~g~v~~ 81 (84)
T PRK11625 25 MLTLELKDGEVLQAKASDLVSRKNVEYLVVEAAGETRELRLD-----KIASFSHPEIGTVVV 81 (84)
T ss_pred eEEEEECCCCEEEEEEEeeecCCceEEEEEEcCCCEEEEEee-----eEeeccCccccEEEe
Confidence 346889999999999976432222333332211344566555 999999999996533
No 172
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=60.13 E-value=33 Score=27.85 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=24.3
Q ss_pred HHHHHHHHCCCeEE---EEcCCCChhhhh----c--cCCCeEEEcCCCC
Q 039151 204 NILRRLASYGCQII---VVPSTWPASETL----K--LKPDGVLFSNGPG 243 (279)
Q Consensus 204 ~I~r~L~~~G~~v~---vvp~~~~~~~i~----~--~~~DgIiLSgGPG 243 (279)
.+...|++.|+++. +++.+ .++|. + .++|.||.+||-|
T Consensus 22 ~l~~~l~~~G~~~~~~~~v~Dd--~~~I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 22 ALAELLTELGIEVTRYVIVPDD--KEAIKEALREALERADLVITTGGTG 68 (135)
T ss_pred HHHHHHHHCCCeEEEEEEeCCC--HHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 45667889998765 34422 22221 1 3699999999866
No 173
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=60.11 E-value=65 Score=29.44 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-hhhccCCCeEEEc
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-ETLKLKPDGVLFS 239 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-~i~~~~~DgIiLS 239 (279)
..+.++|+++|+++.++.++.... .+...++|.+|..
T Consensus 26 ~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 63 (304)
T PRK01372 26 AAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNA 63 (304)
T ss_pred HHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEe
Confidence 568899999999999997664332 3334579999875
No 174
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=59.57 E-value=41 Score=26.98 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=29.2
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEEcCCC
Q 039151 205 ILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNGP 242 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiLSgGP 242 (279)
+...|+..|+++.....+.+.+++. +.+||.|.||.--
T Consensus 19 ~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 19 IARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccc
Confidence 4456788999999887777776653 4689999998653
No 175
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=59.34 E-value=55 Score=32.18 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=34.5
Q ss_pred cEEEEEEcCch-HH-HHHHHHHCCCeEEEEcCCCC--hhhhhc--------------cCCCeEEEcCCC
Q 039151 192 YRVIAYDFGIK-HN-ILRRLASYGCQIIVVPSTWP--ASETLK--------------LKPDGVLFSNGP 242 (279)
Q Consensus 192 ~~I~viD~G~k-~~-I~r~L~~~G~~v~vvp~~~~--~~~i~~--------------~~~DgIiLSgGP 242 (279)
.+|+++-.|.. .+ +.+.|.++|++|.+...... .+++.+ .++|.||+|+|-
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi 76 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAI 76 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCC
Confidence 57899988753 34 78999999999988764321 112211 158999998773
No 176
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.61 E-value=58 Score=28.50 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCh-------hhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPA-------SETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~-------~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.+.+.+.+. +.+...++||+|+.+. .+.+.....+.++++. .++|+.-|
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~--~~~~~~~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS--LHADTHADHSHYERLAERGLPVVLV 89 (273)
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC--CCCcccchhHHHHHHHhCCCCEEEE
Confidence 44666777788888777654322 1233457899888532 1121112223344444 46776544
No 177
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=58.03 E-value=43 Score=31.79 Aligned_cols=84 Identities=20% Similarity=0.396 Sum_probs=47.3
Q ss_pred cEEEEEEcCch-HHHHHHHHHCCCeEEEEcCCC-ChhhhhccCCCeEEEcCCC--CCCC-CChHHHHHHHHHH--CCCCE
Q 039151 192 YRVIAYDFGIK-HNILRRLASYGCQIIVVPSTW-PASETLKLKPDGVLFSNGP--GDPS-AVPYAVAIVKELL--GKVPV 264 (279)
Q Consensus 192 ~~I~viD~G~k-~~I~r~L~~~G~~v~vvp~~~-~~~~i~~~~~DgIiLSgGP--Gdp~-~~~~~i~~Ir~~~--~~~PI 264 (279)
++++..-+|.. ..+++.+++.|..+...-.+. .+....+..+|+||+-|.- |+.. +......++.++. -.+|+
T Consensus 114 ~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPV 193 (330)
T PF03060_consen 114 PDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPV 193 (330)
T ss_dssp -SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-E
T ss_pred eEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcE
Confidence 46888899987 889999999998765543221 1233445689999996431 2222 2223444444444 36999
Q ss_pred e---eecHHHHHHH
Q 039151 265 F---GICMGHQLLG 275 (279)
Q Consensus 265 L---GICLGhQLLa 275 (279)
+ ||+-|-++-+
T Consensus 194 iaAGGI~dg~~iaa 207 (330)
T PF03060_consen 194 IAAGGIADGRGIAA 207 (330)
T ss_dssp EEESS--SHHHHHH
T ss_pred EEecCcCCHHHHHH
Confidence 8 7999888653
No 178
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.00 E-value=30 Score=32.59 Aligned_cols=62 Identities=26% Similarity=0.332 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCeEEEEcCCC---C-----h---hhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHH
Q 039151 203 HNILRRLASYGCQIIVVPSTW---P-----A---SETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMG 270 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~---~-----~---~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLG 270 (279)
..+.++|.+.|+++.+.+... . . .++ ...+|.+|.-||=|. .+...+.+. .++|++||=.|
T Consensus 23 ~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDGt------~l~~~~~~~~~~~Pvlgin~G 95 (295)
T PRK01231 23 RRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLL-GEVCDLVIVVGGDGS------LLGAARALARHNVPVLGINRG 95 (295)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-ccCCCEEEEEeCcHH------HHHHHHHhcCCCCCEEEEeCC
Confidence 346677888999988865321 0 0 111 235788888888653 334455554 58999999888
Q ss_pred H
Q 039151 271 H 271 (279)
Q Consensus 271 h 271 (279)
+
T Consensus 96 ~ 96 (295)
T PRK01231 96 R 96 (295)
T ss_pred c
Confidence 6
No 179
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=57.93 E-value=15 Score=37.65 Aligned_cols=69 Identities=23% Similarity=0.389 Sum_probs=40.6
Q ss_pred EEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC-----hHHHHHHHHHH--CCCCEeeec
Q 039151 196 AYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV-----PYAVAIVKELL--GKVPVFGIC 268 (279)
Q Consensus 196 viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~-----~~~i~~Ir~~~--~~~PILGIC 268 (279)
++|+--.++++++|.+.|++|.++.+.-. +. +...-+..+. ...++.+++.. .++=++|-|
T Consensus 203 ilDL~p~~Slv~~L~~qGf~V~~iDwrgp---------g~---s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lvG~c 270 (532)
T TIGR01838 203 ILDLRPQNSLVRWLVEQGHTVFVISWRNP---------DA---SQADKTFDDYIRDGVIAALEVVEAITGEKQVNCVGYC 270 (532)
T ss_pred eeecccchHHHHHHHHCCcEEEEEECCCC---------Cc---ccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEEEEC
Confidence 34544457899999999999998876321 10 0000011111 22344455444 367799999
Q ss_pred HHHHHHHH
Q 039151 269 MGHQLLGQ 276 (279)
Q Consensus 269 LGhQLLa~ 276 (279)
+|-.+++.
T Consensus 271 mGGtl~a~ 278 (532)
T TIGR01838 271 IGGTLLST 278 (532)
T ss_pred cCcHHHHH
Confidence 99998643
No 180
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=57.58 E-value=52 Score=28.91 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCC-hhh----hhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEee
Q 039151 203 HNILRRLASYGCQIIVVPSTWP-ASE----TLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFG 266 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~-~~~----i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILG 266 (279)
..+.+.+++.|+.+.++..+.. .+. +...++||||+.+...+ . ..++++. .++|+.-
T Consensus 30 ~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~----~---~~~~~~~~~~ipvV~ 92 (275)
T cd06295 30 GGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ----D---PLPERLAETGLPFVV 92 (275)
T ss_pred HHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC----h---HHHHHHHhCCCCEEE
Confidence 3456777888999988865432 112 22358999999643321 1 2245554 4788753
No 181
>PRK03094 hypothetical protein; Provisional
Probab=56.97 E-value=22 Score=27.37 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=26.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGD 244 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGd 244 (279)
.+|.++|+++|++|.-+....+ ...+|++|++|-..|
T Consensus 11 s~i~~~L~~~GYeVv~l~~~~~-----~~~~Da~VitG~d~n 47 (80)
T PRK03094 11 TDVQQALKQKGYEVVQLRSEQD-----AQGCDCCVVTGQDSN 47 (80)
T ss_pred HHHHHHHHHCCCEEEecCcccc-----cCCcCEEEEeCCCcc
Confidence 4688999999998876643211 247999999976543
No 182
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=56.83 E-value=29 Score=29.44 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=42.9
Q ss_pred EEEEEEcCch-HHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHHCCCCEee
Q 039151 193 RVIAYDFGIK-HNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELLGKVPVFG 266 (279)
Q Consensus 193 ~I~viD~G~k-~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~~~~PILG 266 (279)
.++.+|-|.. ..+.+.|.... +++|+.++.+. ..+....---|++.||--++... +...+.++++.-++=++|
T Consensus 21 ~~Ifld~GtT~~~la~~L~~~~-~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~afi~ 99 (161)
T PF00455_consen 21 DTIFLDSGTTTLELAKYLPDKK-NLTVVTNSLPIANELSENPNIEVILLGGEVNPKSLSFVGPIALEALRQFRFDKAFIG 99 (161)
T ss_pred CEEEEECchHHHHHHHHhhcCC-ceEEEECCHHHHHHHHhcCceEEEEeCCEEEcCCCcEECchHHHHHHhhccceEEec
Confidence 4788888874 55677776653 67777766543 33333223356666775554321 345666666654555554
Q ss_pred ec
Q 039151 267 IC 268 (279)
Q Consensus 267 IC 268 (279)
.|
T Consensus 100 ~~ 101 (161)
T PF00455_consen 100 AD 101 (161)
T ss_pred cc
Confidence 43
No 183
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.57 E-value=31 Score=32.57 Aligned_cols=62 Identities=21% Similarity=0.430 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCeEEEEcCCCCh---h---hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecH-HH
Q 039151 204 NILRRLASYGCQIIVVPSTWPA---S---ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICM-GH 271 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~---~---~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICL-Gh 271 (279)
.+.++|.+.|+++.+.+..... . +-....+|.+|.-||=|. ..+.++.+. .++|++||=. |+
T Consensus 23 ~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT------~l~~~~~~~~~~~pv~gin~~G~ 92 (305)
T PRK02645 23 RCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGT------VLAAARHLAPHDIPILSVNVGGH 92 (305)
T ss_pred HHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHH------HHHHHHHhccCCCCEEEEecCCc
Confidence 4667788899998876532111 1 111235899998888653 345555555 5899999987 54
No 184
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=56.16 E-value=30 Score=30.17 Aligned_cols=60 Identities=18% Similarity=0.372 Sum_probs=38.9
Q ss_pred HHHHHHHHHCCCeEEEE-cCCCChhh-------hhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVV-PSTWPASE-------TLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vv-p~~~~~~~-------i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+-+.+++.|+++.++ +...+.+. +...++||||++ |-++... .+.++++. .++|+.-+
T Consensus 18 ~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~--~~~~~~~---~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 18 KGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVS--PVDPDSL---APFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEE--SSSTTTT---HHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEec--CCCHHHH---HHHHHHHhhcCceEEEE
Confidence 44566778899999995 66554332 234689999995 3344433 35556666 58888764
No 185
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=56.12 E-value=54 Score=28.81 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=36.6
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
...+.+.++++|+++.+.+.+.+.+ .+...++||||+++ .++..... .++++. .++|+..+
T Consensus 18 ~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~--~~~~~~~~---~i~~~~~~~iPvV~~ 86 (273)
T cd06309 18 TKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAP--VVETGWDP---VLKEAKAAGIPVILV 86 (273)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcC--CccccchH---HHHHHHHCCCCEEEE
Confidence 4567788888999999986543322 22245899999964 23332222 334444 36676554
No 186
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=56.08 E-value=66 Score=31.59 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=50.3
Q ss_pred EEcCchHHHHHHHHHC-CCeEEEEcCCCChhh---hhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCEe--
Q 039151 197 YDFGIKHNILRRLASY-GCQIIVVPSTWPASE---TLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPVF-- 265 (279)
Q Consensus 197 iD~G~k~~I~r~L~~~-G~~v~vvp~~~~~~~---i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PIL-- 265 (279)
+|-...+.-+++|++. +..+. +.--.+.++ ..+..+|+|++||.-|...+. -..+..+++.+ .++|++
T Consensus 236 ~~~~~tW~~i~~lr~~~~~pvi-vKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~d 314 (383)
T cd03332 236 SGPSLTWEDLAFLREWTDLPIV-LKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFD 314 (383)
T ss_pred CCCCCCHHHHHHHHHhcCCCEE-EecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEe
Confidence 3555677778888765 55443 322233333 345789999999877743322 13445555556 478987
Q ss_pred -eecHHHHHH-HHHcC
Q 039151 266 -GICMGHQLL-GQALG 279 (279)
Q Consensus 266 -GICLGhQLL-a~AlG 279 (279)
||-.|..++ |+|+|
T Consensus 315 GGIr~G~Dv~KALaLG 330 (383)
T cd03332 315 SGVRTGADIMKALALG 330 (383)
T ss_pred CCcCcHHHHHHHHHcC
Confidence 677777776 44655
No 187
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=55.61 E-value=32 Score=33.14 Aligned_cols=86 Identities=27% Similarity=0.411 Sum_probs=51.2
Q ss_pred EEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhh---hhccCCCeEEEcCCCCCCCC-ChHHHHH---HHHHH-CCCCEe
Q 039151 194 VIAYDFGIKHNILRRLASYGCQIIVVPSTWPASE---TLKLKPDGVLFSNGPGDPSA-VPYAVAI---VKELL-GKVPVF 265 (279)
Q Consensus 194 I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~---i~~~~~DgIiLSgGPGdp~~-~~~~i~~---Ir~~~-~~~PIL 265 (279)
...+|-...++=+.+|+..---+.++.--.+.++ -.+...+|||+||=-|---| .+..++. +-+++ .++|+|
T Consensus 203 ~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~ 282 (363)
T KOG0538|consen 203 SSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVF 282 (363)
T ss_pred hcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEE
Confidence 4456777778878888876444455543222222 22468999999986553222 1222333 33333 689998
Q ss_pred ---eecHHHHHH-HHHcC
Q 039151 266 ---GICMGHQLL-GQALG 279 (279)
Q Consensus 266 ---GICLGhQLL-a~AlG 279 (279)
||=.|.-++ |+|||
T Consensus 283 lDGGVR~G~DVlKALALG 300 (363)
T KOG0538|consen 283 LDGGVRRGTDVLKALALG 300 (363)
T ss_pred EecCcccchHHHHHHhcc
Confidence 777777766 66665
No 188
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.39 E-value=51 Score=30.26 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=37.5
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecHHH
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGH 271 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICLGh 271 (279)
..+.+.|.++|..+....... ....++|.+|.-||=|. .+...+.+ ++|++||=.|+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~----~~~~~~d~vi~iGGDGT------~L~a~~~~--~~Pilgin~G~ 72 (256)
T PRK14075 16 KFLKEKISKEHEVVEFCEASA----SGKVTADLIIVVGGDGT------VLKAAKKV--GTPLVGFKAGR 72 (256)
T ss_pred HHHHHHHHHcCCeeEeecccc----cccCCCCEEEEECCcHH------HHHHHHHc--CCCEEEEeCCC
Confidence 456677888887766443211 11246899999888663 34445544 89999998886
No 189
>COG2403 Predicted GTPase [General function prediction only]
Probab=55.08 E-value=33 Score=34.00 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=40.2
Q ss_pred ccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCC
Q 039151 94 NWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEES 140 (279)
Q Consensus 94 ~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~ 140 (279)
+-+...||...|..+|||-..+=|--.|.|.||+++.=..++.-.+.
T Consensus 47 er~yppsleg~~~p~Gvpi~~~k~~~~lek~ire~~VD~~VlaySDv 93 (449)
T COG2403 47 ERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIREKDVDIVVLAYSDV 93 (449)
T ss_pred cccCCCCcccccccCCccccccccHHHHHHHHHHcCCCeEEEEcccC
Confidence 34566789999999999999999999999999999998888865443
No 190
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=54.86 E-value=50 Score=28.70 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=26.6
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCC
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNG 241 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgG 241 (279)
...+.+.+++.|+.+.+++...+.+ .+...++||||+.+.
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 18 ATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3456677888899988886543322 233458999999754
No 191
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=53.78 E-value=50 Score=30.69 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCeEE---EEcCCCChhhhh------ccCCCeEEEcCCCC
Q 039151 204 NILRRLASYGCQII---VVPSTWPASETL------KLKPDGVLFSNGPG 243 (279)
Q Consensus 204 ~I~r~L~~~G~~v~---vvp~~~~~~~i~------~~~~DgIiLSgGPG 243 (279)
-+.+.|.++|+++. +|+-+ .++|. ..++|-||+|||=|
T Consensus 25 ~la~~L~~~G~~v~~~~~VgD~--~~~I~~~l~~a~~r~D~vI~tGGLG 71 (255)
T COG1058 25 FLADELTELGVDLARITTVGDN--PDRIVEALREASERADVVITTGGLG 71 (255)
T ss_pred HHHHHHHhcCceEEEEEecCCC--HHHHHHHHHHHHhCCCEEEECCCcC
Confidence 36788999998875 44433 22221 24699999999987
No 192
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=53.24 E-value=66 Score=28.00 Aligned_cols=29 Identities=7% Similarity=0.193 Sum_probs=18.2
Q ss_pred EEEEEEcC---chHH----HHHHHHH-CCCeEEEEcC
Q 039151 193 RVIAYDFG---IKHN----ILRRLAS-YGCQIIVVPS 221 (279)
Q Consensus 193 ~I~viD~G---~k~~----I~r~L~~-~G~~v~vvp~ 221 (279)
+|+|+-+. .+.. +.+.+.+ .|+++++++.
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 67777654 3333 4455665 7888888764
No 193
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=53.09 E-value=87 Score=30.63 Aligned_cols=82 Identities=23% Similarity=0.404 Sum_probs=50.4
Q ss_pred EEcCchHHHHHHHHHC-CCeEEEEcCCCChhh---hhccCCCeEEEcCCCCCCCC-ChHHH---HHHHHHH-CCCCEe--
Q 039151 197 YDFGIKHNILRRLASY-GCQIIVVPSTWPASE---TLKLKPDGVLFSNGPGDPSA-VPYAV---AIVKELL-GKVPVF-- 265 (279)
Q Consensus 197 iD~G~k~~I~r~L~~~-G~~v~vvp~~~~~~~---i~~~~~DgIiLSgGPGdp~~-~~~~i---~~Ir~~~-~~~PIL-- 265 (279)
+|-...+.-+++|++. +..+ ++.--.+.++ ..+...|+|++||--|-..+ ....+ ..+++.+ .++||+
T Consensus 207 ~~~~~tW~di~wlr~~~~~Pi-ivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~d 285 (367)
T PLN02493 207 IDRTLSWKDVQWLQTITKLPI-LVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLD 285 (367)
T ss_pred CCCCCCHHHHHHHHhccCCCE-EeecCCCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEe
Confidence 4556677778888875 3333 3322223333 34568999999997664322 22233 3344545 578887
Q ss_pred -eecHHHHHH-HHHcC
Q 039151 266 -GICMGHQLL-GQALG 279 (279)
Q Consensus 266 -GICLGhQLL-a~AlG 279 (279)
||..|..++ |+|||
T Consensus 286 GGIr~G~Dv~KALALG 301 (367)
T PLN02493 286 GGVRRGTDVFKALALG 301 (367)
T ss_pred CCcCcHHHHHHHHHcC
Confidence 888998887 66766
No 194
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=52.08 E-value=90 Score=27.33 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=23.5
Q ss_pred ccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 230 KLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 230 ~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
...||.||+. ||.. ....++++. -++|+.|||
T Consensus 125 ~~~Pdlviv~----~~~~---~~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 125 FRLPDLVIVL----DPRK---EHQAIREASKLGIPVIAIV 157 (193)
T ss_pred ccCCCEEEEe----CCcc---chHHHHHHHHcCCCEEEEe
Confidence 3579999997 3443 345667777 599999998
No 195
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.97 E-value=47 Score=30.86 Aligned_cols=50 Identities=24% Similarity=0.430 Sum_probs=34.2
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH---CCCCEeeecHHH
Q 039151 204 NILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL---GKVPVFGICMGH 271 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~---~~~PILGICLGh 271 (279)
.+.++|.++|+++ . ..++|.+|.-||=| -.+...+.+. .++|++||=+|+
T Consensus 19 ~l~~~l~~~g~~~---~---------~~~~Dlvi~iGGDG------T~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 19 KLKKYLKDFGFIL---D---------EKNPDIVISVGGDG------TLLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred HHHHHHHHcCCcc---C---------CcCCCEEEEECCcH------HHHHHHHHhcccCCCCeEEEEeCCC
Confidence 3556677788762 1 12579899888866 3445555554 389999999886
No 196
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=51.88 E-value=86 Score=24.89 Aligned_cols=69 Identities=20% Similarity=0.352 Sum_probs=37.7
Q ss_pred EEEEE-EcCchHHHH-----HHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEee
Q 039151 193 RVIAY-DFGIKHNIL-----RRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFG 266 (279)
Q Consensus 193 ~I~vi-D~G~k~~I~-----r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILG 266 (279)
+|+++ ..|+..+++ ...++.|.+++|-.+..+..+....++|.|+++ |+ .....+.+++...++|+..
T Consensus 5 kIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~~~~~~DviLl~-----Pq-i~~~~~~i~~~~~~~pV~~ 78 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLG-----PQ-IAYMLPEIQRLLPNKPVEV 78 (106)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhhccccCCCEEEEC-----HH-HHHHHHHHHhhcCCCCEEE
Confidence 56555 557654433 344667887776433222211123478988883 33 3445556665555578766
Q ss_pred e
Q 039151 267 I 267 (279)
Q Consensus 267 I 267 (279)
|
T Consensus 79 I 79 (106)
T PRK10499 79 I 79 (106)
T ss_pred E
Confidence 5
No 197
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=51.84 E-value=85 Score=27.11 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
..+.+.+++.|+.+.+.+.+.+.+ .+...++||||+.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~ 63 (268)
T cd01575 19 QGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTG 63 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeC
Confidence 456677888899988876543321 22345799999964
No 198
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=51.70 E-value=84 Score=27.38 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=34.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+++.|+.+.++....+.+ .+...++||||+.++ ++... .+.++++. .++|+..+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~--~~~~~---~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHG--RAEVL---KPWVKRALDAGIPVVAF 86 (273)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC--Chhhh---HHHHHHHHHcCCCEEEe
Confidence 456677888899988876543322 122358999999642 32211 23344444 46776543
No 199
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.55 E-value=76 Score=28.31 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=27.8
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcC
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSg 240 (279)
...+.+.+.+.|+.+.+.+.+...+.+...++||+|+.+
T Consensus 26 ~~~i~~~~~~~gy~~~~~~~~~~~~~l~~~~vdgiIi~~ 64 (269)
T cd06287 26 AAAAAESALERGLALCLVPPHEADSPLDALDIDGAILVE 64 (269)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCchhhhhccCcCeEEEec
Confidence 456778888899999888764333345456899999863
No 200
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=50.54 E-value=61 Score=32.95 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=50.4
Q ss_pred ccEEEEEEc--Cch---HHHHHHHHHCCCeEEEEcCC-CChh---hhhccCCCeEEEcCCCCCCCC----------ChHH
Q 039151 191 TYRVIAYDF--GIK---HNILRRLASYGCQIIVVPST-WPAS---ETLKLKPDGVLFSNGPGDPSA----------VPYA 251 (279)
Q Consensus 191 ~~~I~viD~--G~k---~~I~r~L~~~G~~v~vvp~~-~~~~---~i~~~~~DgIiLSgGPGdp~~----------~~~~ 251 (279)
+..|+++|. |-. ++.++++++.--.+.++--+ .+.+ .+.+...|+|.+++|||.... ....
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~ 339 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATA 339 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccH
Confidence 467899997 332 25677777642123333222 2333 344568999999998884211 1124
Q ss_pred HHHHHHHH--CCCCEe---eecHHHHHH-HHHcC
Q 039151 252 VAIVKELL--GKVPVF---GICMGHQLL-GQALG 279 (279)
Q Consensus 252 i~~Ir~~~--~~~PIL---GICLGhQLL-a~AlG 279 (279)
+..+.++. .++||+ ||..+-++. |+|+|
T Consensus 340 i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~G 373 (505)
T PLN02274 340 VYKVASIAAQHGVPVIADGGISNSGHIVKALTLG 373 (505)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcC
Confidence 45566655 368887 566665554 44444
No 201
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=50.26 E-value=4.3 Score=27.30 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=11.6
Q ss_pred CEeeecHHHHHHHHHcC
Q 039151 263 PVFGICMGHQLLGQALG 279 (279)
Q Consensus 263 PILGICLGhQLLa~AlG 279 (279)
-..|-|+|.|+|..|-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SS--TTTTTHHHHTTT-
T ss_pred Cccccccchhhhhhccc
Confidence 45788999999987654
No 202
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.25 E-value=87 Score=31.07 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=33.3
Q ss_pred cEEEEEEcCch-HHHHHHHHHCCCeEEEEcCCC-Ch---hhh---------h---ccCCCeEEEcCCC
Q 039151 192 YRVIAYDFGIK-HNILRRLASYGCQIIVVPSTW-PA---SET---------L---KLKPDGVLFSNGP 242 (279)
Q Consensus 192 ~~I~viD~G~k-~~I~r~L~~~G~~v~vvp~~~-~~---~~i---------~---~~~~DgIiLSgGP 242 (279)
.+|+|+-+|.. .+..+.|. .|+++++..... .. .++ . -.++|.||+|+|-
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI 73 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGI 73 (454)
T ss_pred CEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCC
Confidence 58999999975 46778888 499998886321 11 111 0 0258999998773
No 203
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=50.13 E-value=60 Score=25.90 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=43.6
Q ss_pred cCCCEEEEEeeCCC--cceeeeEEEeecCCcccc-cccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEEEecc
Q 039151 13 EDGSIWRAKSFGAS--GTQVGEVVFNTSLTGYQE-ILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSL 88 (279)
Q Consensus 13 edG~~f~G~~fG~~--~~~~GEvVFnT~mtGYqE-~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~iv~e~ 88 (279)
.+|+.|.-.+|++. +...||+|+- ...|..+ -+. ++..|.|++.-- |++.....-....+--++|+|+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~g~lv~~-~~~gC~~~~~~-~~~~gkIvlv~r---g~c~f~~K~~~A~~aGA~~vIv~n~ 77 (122)
T cd02130 4 ANGEAIPTTAFTYSPAGEVTGPLVVV-PNLGCDAADYP-ASVAGNIALIER---GECPFGDKSALAGAAGAAAAIIYNN 77 (122)
T ss_pred eCCEEEeeeecccCCCCCcEEEEEEe-CCCCCCcccCC-cCCCCEEEEEEC---CCCCHHHHHHHHHHCCCcEEEEEEC
Confidence 36788988888854 6788999995 3344332 222 358999988764 4432221112233445788998754
No 204
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=49.95 E-value=19 Score=28.72 Aligned_cols=70 Identities=26% Similarity=0.364 Sum_probs=39.1
Q ss_pred cEEEEEEcCc-hHHHHHHHHHC--CCeEEEEcCCC--------------Chhhhh----ccCCCeEEEcCCCCCCCCChH
Q 039151 192 YRVIAYDFGI-KHNILRRLASY--GCQIIVVPSTW--------------PASETL----KLKPDGVLFSNGPGDPSAVPY 250 (279)
Q Consensus 192 ~~I~viD~G~-k~~I~r~L~~~--G~~v~vvp~~~--------------~~~~i~----~~~~DgIiLSgGPGdp~~~~~ 250 (279)
|||+||.-|. .|.|...|.+- ..++.+.|-+. +.+++. +.++|-+|+ ||-.|-. ..
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~v~~v~~aPGN~G~~~~~~~~~~~~~d~~~l~~~a~~~~idlvvv--GPE~pL~-~G 77 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSPSVEEVYVAPGNPGTAELGKNVPIDITDPEELADFAKENKIDLVVV--GPEAPLV-AG 77 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCTTEEEEEEEE--TTGGGTSEEE-S-TT-HHHHHHHHHHTTESEEEE--SSHHHHH-TT
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhceecCCCCCCHHHHHHHHHHcCCCEEEE--CChHHHH-HH
Confidence 6899999987 67888888653 23555666542 122222 247788888 5533321 12
Q ss_pred HHHHHHHHHCCCCEee
Q 039151 251 AVAIVKELLGKVPVFG 266 (279)
Q Consensus 251 ~i~~Ir~~~~~~PILG 266 (279)
..+.+++ .++|+||
T Consensus 78 l~D~l~~--~gi~vfG 91 (100)
T PF02844_consen 78 LADALRA--AGIPVFG 91 (100)
T ss_dssp HHHHHHH--TT-CEES
T ss_pred HHHHHHH--CCCcEEC
Confidence 2233332 5899887
No 205
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=49.58 E-value=41 Score=28.59 Aligned_cols=48 Identities=15% Similarity=0.398 Sum_probs=34.8
Q ss_pred cEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCC-----hhhhhccCCCeEEEc
Q 039151 192 YRVIAYDFGIKHNILRRLASYGCQIIVVPSTWP-----ASETLKLKPDGVLFS 239 (279)
Q Consensus 192 ~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~-----~~~i~~~~~DgIiLS 239 (279)
.++++.|+|++...++.|.+.-+.+++...+++ ...+...++.+|||+
T Consensus 90 ~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn~s~YP~yV~n~~~YrfKpLIiA 142 (142)
T PF07801_consen 90 HKIILYDLGLSEEQIKKLKKNFCNVEVRKFNFSKYPKYVNNWMEYRFKPLIIA 142 (142)
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCceEEEECCCccCcHHHHHHHhhcchheeeC
Confidence 479999999999999999875566666665543 233445678888874
No 206
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.30 E-value=88 Score=30.66 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=34.3
Q ss_pred cEEEEEEcCch-HHHHHHHHHCCCeEEEEcCCCC-hhhhh-------c------cCCCeEEEcCCC
Q 039151 192 YRVIAYDFGIK-HNILRRLASYGCQIIVVPSTWP-ASETL-------K------LKPDGVLFSNGP 242 (279)
Q Consensus 192 ~~I~viD~G~k-~~I~r~L~~~G~~v~vvp~~~~-~~~i~-------~------~~~DgIiLSgGP 242 (279)
.+|+++.+|-. .+..+.|.++|++|.+.....+ ..++. . .++|-||.|+|-
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i 75 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGV 75 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCC
Confidence 48999999753 3568899999999988763211 11110 0 258989998874
No 207
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=49.14 E-value=70 Score=27.85 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=26.6
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCC
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNG 241 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgG 241 (279)
...+.+.+++.|+.+.+...+.+.+ .+...++|||++.+.
T Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 18 AKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3456677888899988876643322 123458999999654
No 208
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=49.03 E-value=98 Score=27.67 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.++....+.+ .+...++||||+.+. ++.. ..+.++++. .++|+..+
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~--~~~~---~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 19 PNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPV--DGEA---LASAVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC--Chhh---HHHHHHHHHHCCCCEEEE
Confidence 456677888999999987654332 123468999999642 2221 123444444 57887655
No 209
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=48.83 E-value=84 Score=27.11 Aligned_cols=60 Identities=17% Similarity=0.316 Sum_probs=35.0
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
...+.+.++++|+.+.+.+...+.+ .+...++||||+++ .++.. . +.++.+. .++|++-+
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~--~~~~~-~---~~~~~~~~~~ipvV~~ 85 (266)
T cd06282 18 VQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTV--ADAAT-S---PALDLLDAERVPYVLA 85 (266)
T ss_pred HHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEec--CCCCc-h---HHHHHHhhCCCCEEEE
Confidence 3456677888899998876543322 22345799999854 33321 1 2334443 47887655
No 210
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=48.43 E-value=31 Score=27.43 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=39.8
Q ss_pred EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEee
Q 039151 193 RVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFG 266 (279)
Q Consensus 193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILG 266 (279)
||+|||--. .+++--.|...|..+..+....-.........+++++..|..+ .....++.+.+.....|++=
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvll 74 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWSQADWSSPWEACAVILGSCS--KLAELLKELLKWAPHIPVLL 74 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHHHhhhhcCCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEE
Confidence 578888644 3445555777899999886421111122345677777555443 22233333333335788863
No 211
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=48.24 E-value=24 Score=35.12 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=32.5
Q ss_pred hhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecHHHHHHHH
Q 039151 225 ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQ 276 (279)
Q Consensus 225 ~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICLGhQLLa~ 276 (279)
.+++.+..||+++|.- -+|.+ .....+.+...+..++|+|.|+|.+..
T Consensus 127 ~~~i~~~~pda~lin~--tNP~~--~vt~~~~~~~~~~kviGlC~~~~~~~~ 174 (437)
T cd05298 127 IDDIEKYSPDAWILNY--SNPAA--IVAEALRRLFPNARILNICDMPIAIMD 174 (437)
T ss_pred HHHHHHHCCCeEEEEe--cCcHH--HHHHHHHHHCCCCCEEEECCcHHHHHH
Confidence 3456667899999941 24553 344555555567889999999987654
No 212
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=47.83 E-value=1.3e+02 Score=25.83 Aligned_cols=68 Identities=21% Similarity=0.132 Sum_probs=36.9
Q ss_pred CchHHHHHHHHHC---CCeEEEEcCCC-ChhhhhccCCCeEEEcCCCCCCCC-ChHHHHHHHHH---HCCCCEeeecHH
Q 039151 200 GIKHNILRRLASY---GCQIIVVPSTW-PASETLKLKPDGVLFSNGPGDPSA-VPYAVAIVKEL---LGKVPVFGICMG 270 (279)
Q Consensus 200 G~k~~I~r~L~~~---G~~v~vvp~~~-~~~~i~~~~~DgIiLSgGPGdp~~-~~~~i~~Ir~~---~~~~PILGICLG 270 (279)
|.+..+.+.+.+. |+++.+++... +..++ .++|.||| |+|-.-.. .+...+++++. +.++|+.=.|.|
T Consensus 12 G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~~~l--~~yD~vIl-Gspi~~G~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 12 GQTRKIASYIASELKEGIQCDVVNLHRIEEPDL--SDYDRVVI-GASIRYGHFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred ChHHHHHHHHHHHhCCCCeEEEEEhhhcCccCH--HHCCEEEE-ECccccCCcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 6665555554331 67888887542 22233 36899998 44421111 13344454443 367777666655
No 213
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=47.71 E-value=97 Score=26.82 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=24.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
..+.+.+++.|+.+.+++.+.+.+ .+...++||+|+.+
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (268)
T cd06298 19 RGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMG 63 (268)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeC
Confidence 445567778899888876543222 22345889999864
No 214
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=47.65 E-value=15 Score=34.96 Aligned_cols=35 Identities=29% Similarity=0.581 Sum_probs=26.3
Q ss_pred CCCeEEEcCCCCCCCCC--h-HHHHHHHHHHCCCCEeeec
Q 039151 232 KPDGVLFSNGPGDPSAV--P-YAVAIVKELLGKVPVFGIC 268 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~--~-~~i~~Ir~~~~~~PILGIC 268 (279)
+.|.||| |||||..+ + -.++-|++++++.|+.+||
T Consensus 182 ~AD~IIl--GPgsp~TSI~P~LlVpgIreAL~~a~vV~Vs 219 (297)
T TIGR01819 182 KEDNILI--GPSNPITSIGPILSLPGIREALRDKKVVAVS 219 (297)
T ss_pred hCCEEEE--CCCccHHHhhhhcCchhHHHHHHcCCEEEEc
Confidence 6899999 89999754 2 2456677777558999998
No 215
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.61 E-value=91 Score=27.10 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=35.8
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
...+.+.+.++|+++.+++...+.+ .+...++||||+.+. ++... .+.++.+. .++|+.-+
T Consensus 19 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~--~~~~~---~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 19 NKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPT--DGQAY---IPGLRKAKQAGIPVVIT 87 (275)
T ss_pred HHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecC--Ccccc---HHHHHHHHHCCCcEEEe
Confidence 3456677788999998886543322 223458999999532 22211 23344444 57787544
No 216
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=47.43 E-value=1e+02 Score=26.67 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=22.9
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
..+.+.+++.|+.+.+...+.+.+ .+...++||+|+.+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~ 63 (268)
T cd06273 19 QAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIG 63 (268)
T ss_pred HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 456667777888887765433322 12234688888863
No 217
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=47.40 E-value=47 Score=24.71 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=42.8
Q ss_pred EEEEEcC--chHHHHHHHHHCCC-eEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeec
Q 039151 194 VIAYDFG--IKHNILRRLASYGC-QIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGIC 268 (279)
Q Consensus 194 I~viD~G--~k~~I~r~L~~~G~-~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGIC 268 (279)
|+++|-- ....+.+.|...|+ .+..+..... ...+....||-+++.-...+ .+....++.|++.....|++-++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEec
Confidence 5666653 23455567777898 6766543211 22234568999999633222 22234556666555678888776
No 218
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=47.24 E-value=1e+02 Score=27.01 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=25.5
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCC
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNG 241 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgG 241 (279)
...+.+.++++|+.+.+.....+.+ .+...++||+|+.+.
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (273)
T cd01541 18 IRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPT 64 (273)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3456677788888887765433321 233467888888653
No 219
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=46.61 E-value=81 Score=26.02 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=33.3
Q ss_pred cEEEEEEcCc-----hHHH-HHHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEEcCCC
Q 039151 192 YRVIAYDFGI-----KHNI-LRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNGP 242 (279)
Q Consensus 192 ~~I~viD~G~-----k~~I-~r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiLSgGP 242 (279)
+||++--.|. -.++ .+.|+..|++|.-...+.+++++. +.++|.|.||+=-
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCch
Confidence 3555555543 1344 456788899988777666666543 4689999998543
No 220
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=46.41 E-value=20 Score=31.50 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=32.7
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeecHHHHHHHH
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGICMGHQLLGQ 276 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGICLGhQLLa~ 276 (279)
+.|.|.++-|||+..-..-.+...|.+. .++|++|+.- +++||.
T Consensus 54 ~i~~iav~~GPGSfTGlRig~~~akgla~~~~~p~~~vss-L~~lA~ 99 (202)
T TIGR03725 54 DLDAIAVGVGPGSFTGLRIGLATAKGLALALGIPLVGVSS-LEALAA 99 (202)
T ss_pred HCCEEEEecCCChHHhHHHHHHHHHHHHHHhCCCEEecCH-HHHHHh
Confidence 4689999999999876555566666554 5999999985 455553
No 221
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=45.98 E-value=19 Score=35.89 Aligned_cols=79 Identities=20% Similarity=0.402 Sum_probs=52.3
Q ss_pred EEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeecHH
Q 039151 193 RVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGICMG 270 (279)
Q Consensus 193 ~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGICLG 270 (279)
+--++|.--..+.+++|.+.|.+|.++.|..+-..+.+.+.+--+. ......++.+++.. +++=.+|-|-|
T Consensus 119 k~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~~~~~edYi~-------e~l~~aid~v~~itg~~~InliGyCvG 191 (445)
T COG3243 119 KFYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLAAKNLEDYIL-------EGLSEAIDTVKDITGQKDINLIGYCVG 191 (445)
T ss_pred ceeEEeCCCCccHHHHHHHcCCceEEEeccCchHhhhhccHHHHHH-------HHHHHHHHHHHHHhCccccceeeEecc
Confidence 5667888888899999999999999998743311111111000000 01134567777777 58999999999
Q ss_pred HHHHHHHc
Q 039151 271 HQLLGQAL 278 (279)
Q Consensus 271 hQLLa~Al 278 (279)
--+++.|+
T Consensus 192 Gtl~~~al 199 (445)
T COG3243 192 GTLLAAAL 199 (445)
T ss_pred hHHHHHHH
Confidence 88887765
No 222
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=45.81 E-value=1e+02 Score=28.20 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=35.9
Q ss_pred HHHHHHHHHCCCeEEEEcCCC--Chhh----hhccCCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEee
Q 039151 203 HNILRRLASYGCQIIVVPSTW--PASE----TLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFG 266 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~--~~~~----i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILG 266 (279)
..+.+.|.+.|.++.++.... ...+ ..+.++|.||+.||=|...+ .+..+. .+.|.+|
T Consensus 22 ~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~------v~~~l~~~~~~~~lg 87 (293)
T TIGR00147 22 REVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINE------VVNALIQLDDIPALG 87 (293)
T ss_pred HHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHH------HHHHHhcCCCCCcEE
Confidence 346777888999988776432 2222 22346899999999885442 223333 3456777
No 223
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=45.68 E-value=76 Score=26.47 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=25.6
Q ss_pred HHHHHHHHCCCeEEEEcC-CCChhhhhc------c--CCCeEEEcCCCC
Q 039151 204 NILRRLASYGCQIIVVPS-TWPASETLK------L--KPDGVLFSNGPG 243 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~-~~~~~~i~~------~--~~DgIiLSgGPG 243 (279)
.+.+.|++.|+++..+.. ..+.+++.+ . ++|.||.+||-+
T Consensus 24 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 24 ALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred HHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 456678999998775532 122333321 2 699999999865
No 224
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=45.61 E-value=99 Score=26.57 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=24.9
Q ss_pred HHHHHHHHCCCeEEE---EcCCCC--hhhhhc--cCCCeEEEcCCCC
Q 039151 204 NILRRLASYGCQIIV---VPSTWP--ASETLK--LKPDGVLFSNGPG 243 (279)
Q Consensus 204 ~I~r~L~~~G~~v~v---vp~~~~--~~~i~~--~~~DgIiLSgGPG 243 (279)
.+.+.|.+.|+++.. ++.+.. .+.+.. ..+|.||.+||-|
T Consensus 23 ~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G 69 (170)
T cd00885 23 FLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG 69 (170)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 466778999998753 333221 111211 3689999999866
No 225
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=45.35 E-value=58 Score=27.09 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=34.8
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEEcCCCCCCC-CChHHHHHHHHHH-CCCCEe
Q 039151 205 ILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNGPGDPS-AVPYAVAIVKELL-GKVPVF 265 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiLSgGPGdp~-~~~~~i~~Ir~~~-~~~PIL 265 (279)
+...|+..|++|.-+-.+.+++++. +.++|.|.+|.=-+.-. ..+..++.+++.- +++|++
T Consensus 19 v~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vi 85 (128)
T cd02072 19 LDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLY 85 (128)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEE
Confidence 4456778888887777777766654 35788888875222111 1234444454432 345554
No 226
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=45.22 E-value=1e+02 Score=27.24 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=36.0
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChhh-------hhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPASE-------TLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~~-------i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
...+.+.+++.|+.+.++..+ +.++ +...++||||+++. ++. ...+.++.+. .++|+.-+
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~--~~~---~~~~~~~~~~~~~iPvV~~ 85 (289)
T cd01540 18 WKFAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVP--DVK---LGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred HHHHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccC--chh---hhHHHHHHHHhCCCeEEEe
Confidence 455678888899999887654 3221 22457999999732 221 1223344444 47777654
No 227
>PLN02929 NADH kinase
Probab=44.61 E-value=64 Score=30.70 Aligned_cols=60 Identities=18% Similarity=0.091 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecHHH
Q 039151 204 NILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGH 271 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICLGh 271 (279)
.+.+.|+++|+++..+.. ....+. ..++|.+|.-||=|. .+...+.+-.++|++||=.|+
T Consensus 38 ~~~~~L~~~gi~~~~v~r-~~~~~~-~~~~Dlvi~lGGDGT------~L~aa~~~~~~iPvlGIN~Gp 97 (301)
T PLN02929 38 FCKDILQQKSVDWECVLR-NELSQP-IRDVDLVVAVGGDGT------LLQASHFLDDSIPVLGVNSDP 97 (301)
T ss_pred HHHHHHHHcCCEEEEeec-cccccc-cCCCCEEEEECCcHH------HHHHHHHcCCCCcEEEEECCC
Confidence 466788999999866532 111121 136899999888663 334444442479999998873
No 228
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=44.61 E-value=1.3e+02 Score=26.03 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=35.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhh-------hhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASE-------TLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~-------i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.+.+...+.++ +...++||||+.+ +. .....+.++.+. .++|++-+
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~-~~----~~~~~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 19 DGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINP-TD----SDAVVPAVKAANEAGIPVFTI 86 (268)
T ss_pred HHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcC-CC----hHHHHHHHHHHHHCCCcEEEE
Confidence 4566778888999988765433321 2235799999842 22 112234445544 47787655
No 229
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=43.98 E-value=62 Score=25.16 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=25.4
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhh----hccCCCeEEEcCCC
Q 039151 204 NILRRLASYGCQIIVVPSTWPASET----LKLKPDGVLFSNGP 242 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~~i----~~~~~DgIiLSgGP 242 (279)
.+...|++.|+++..+..+.+.+++ ...+||.|.+|-..
T Consensus 18 ~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~pdiV~iS~~~ 60 (125)
T cd02065 18 IVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGLSALS 60 (125)
T ss_pred HHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEEecch
Confidence 3455678888888877655554433 34688888887543
No 230
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.73 E-value=1e+02 Score=27.34 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=25.1
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCC---hhhhhccCCCeEEEcCC
Q 039151 202 KHNILRRLASYGCQIIVVPSTWP---ASETLKLKPDGVLFSNG 241 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~---~~~i~~~~~DgIiLSgG 241 (279)
...+.+.+++.|+.+.+++.... .+.+...++||+++.+-
T Consensus 23 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 23 LAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred HHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCC
Confidence 34456777778888888765321 12233467888888643
No 231
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=43.70 E-value=90 Score=26.96 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=23.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
..+.+.+++.|+.+.+.....+.+ .+...++||||+.+
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~ 63 (267)
T cd06283 19 KGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNP 63 (267)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeC
Confidence 445667778888887765543222 12335789998864
No 232
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=43.42 E-value=1.3e+02 Score=28.83 Aligned_cols=88 Identities=27% Similarity=0.394 Sum_probs=52.8
Q ss_pred ccEEEEEEcC-chHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCC---CCCC---CChHHHHHHHHHH---
Q 039151 191 TYRVIAYDFG-IKHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGP---GDPS---AVPYAVAIVKELL--- 259 (279)
Q Consensus 191 ~~~I~viD~G-~k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGP---Gdp~---~~~~~i~~Ir~~~--- 259 (279)
+..|+..-+| ....+++.+...|..+...-.... +....+...|+||. .|+ |+.. .....+.+++++.
T Consensus 104 ~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~-~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~ 182 (336)
T COG2070 104 GVPVVSTSFGAPPAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIA-QGAEAGGHRGGVDLEVSTFALVPEVVDAV 182 (336)
T ss_pred CCCEEeccCCCCcHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEe-cCCcCCCcCCCCCCCccHHHHHHHHHHHh
Confidence 4678888889 488899999998876654322111 11222345666666 444 2222 1223444555544
Q ss_pred CCCCEe---eecHHHHHHH-HHcC
Q 039151 260 GKVPVF---GICMGHQLLG-QALG 279 (279)
Q Consensus 260 ~~~PIL---GICLGhQLLa-~AlG 279 (279)
..+|++ ||+-|.+++| +++|
T Consensus 183 ~~iPViAAGGI~dg~~i~AAlalG 206 (336)
T COG2070 183 DGIPVIAAGGIADGRGIAAALALG 206 (336)
T ss_pred cCCCEEEecCccChHHHHHHHHhc
Confidence 348998 8999999985 3544
No 233
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.23 E-value=1.5e+02 Score=29.24 Aligned_cols=31 Identities=13% Similarity=0.329 Sum_probs=25.3
Q ss_pred ccEEEEEEcCch-HHHHHHHHHCCCeEEEEcC
Q 039151 191 TYRVIAYDFGIK-HNILRRLASYGCQIIVVPS 221 (279)
Q Consensus 191 ~~~I~viD~G~k-~~I~r~L~~~G~~v~vvp~ 221 (279)
+.||+|+.+|.. ..+.+.|.+.|++|++...
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~ 45 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECC
Confidence 358999999874 3678899999999998864
No 234
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=43.20 E-value=96 Score=26.37 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=18.2
Q ss_pred HHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEc
Q 039151 204 NILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFS 239 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLS 239 (279)
.+.+.+.++|+++.+.+.+.+.+ .+...++|+|++.
T Consensus 20 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~ 62 (264)
T cd06267 20 GIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILA 62 (264)
T ss_pred HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEe
Confidence 34445555666666665543321 1122466777664
No 235
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=43.10 E-value=52 Score=28.81 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=28.3
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEEcC
Q 039151 204 NILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSN 240 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiLSg 240 (279)
.+...|+..|+++.-+-.+.+.+++. +.+||.|.||-
T Consensus 101 ~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~ 141 (201)
T cd02070 101 LVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSA 141 (201)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 34456788999998777777777654 46899999985
No 236
>PRK01215 competence damage-inducible protein A; Provisional
Probab=42.76 E-value=1.8e+02 Score=26.93 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=24.9
Q ss_pred HHHHHHHHCCCeEEEEcC-CCChhhhh------ccCCCeEEEcCCCC
Q 039151 204 NILRRLASYGCQIIVVPS-TWPASETL------KLKPDGVLFSNGPG 243 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~-~~~~~~i~------~~~~DgIiLSgGPG 243 (279)
.+.+.|.+.|+++..... ..+.++|. ..+.|-||+|||-|
T Consensus 27 ~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 27 WIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred HHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 466778999998864321 11222221 13579999999865
No 237
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=42.54 E-value=1.1e+02 Score=26.76 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=16.6
Q ss_pred EEEEEEc---CchHHHH----HHHHHC-CCeEEEEcC
Q 039151 193 RVIAYDF---GIKHNIL----RRLASY-GCQIIVVPS 221 (279)
Q Consensus 193 ~I~viD~---G~k~~I~----r~L~~~-G~~v~vvp~ 221 (279)
+|+|+=+ |.+..+. +.+++. |+++++++.
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v 38 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRV 38 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 4666644 4343333 445554 889888764
No 238
>PRK06703 flavodoxin; Provisional
Probab=42.49 E-value=93 Score=25.50 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=33.5
Q ss_pred HHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcC---CCCCCC-CChHHHHHHHHH-HCCCCEeeecHH
Q 039151 205 ILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSN---GPGDPS-AVPYAVAIVKEL-LGKVPVFGICMG 270 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSg---GPGdp~-~~~~~i~~Ir~~-~~~~PILGICLG 270 (279)
|.+.|...|.++.+++.. .+..++ .++|.|+|.- |.|.+. .....++.++.. +.++++.-++.|
T Consensus 22 ia~~l~~~g~~v~~~~~~~~~~~~l--~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g 91 (151)
T PRK06703 22 IKVSLDAFDHEVVLQEMDGMDAEEL--LAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSG 91 (151)
T ss_pred HHHHHHhcCCceEEEehhhCCHHHH--hcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccC
Confidence 445566678888887654 333444 3688888822 123322 222334444432 245666555443
No 239
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.45 E-value=1.4e+02 Score=26.07 Aligned_cols=39 Identities=10% Similarity=0.232 Sum_probs=25.9
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
...+.+.+++.|+++.++....+.+ .+...++||+|+.+
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~ 63 (277)
T cd06319 18 GRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISP 63 (277)
T ss_pred HHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3456677788899998876543321 22346899999953
No 240
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=42.38 E-value=1.4e+02 Score=26.19 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=33.2
Q ss_pred HHHHHHHHHCCCeEEEEcCC--CChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPST--WPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~--~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.++++|+.+.++..+ .+.+ .+...++||||+.+.. +.... +.++.+. .++|+..+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~---~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 19 EGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPIS--DVNLV---PAVERAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCC--hHHhH---HHHHHHHHCCCeEEEE
Confidence 44667788889998887432 1211 1223579999985332 11111 2234443 47787654
No 241
>KOG4015 consensus Fatty acid-binding protein FABP [Lipid transport and metabolism]
Probab=42.28 E-value=17 Score=30.54 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.3
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHhh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRLR 126 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR 126 (279)
+.+++++||++-|| |+.||++++++-
T Consensus 13 ~SENFdeymk~lGV----~~~~Rk~a~~~k 38 (133)
T KOG4015|consen 13 SSENFDEYLKALGV----GWATRKIAKLAK 38 (133)
T ss_pred eccCHHHHHHhcCC----cHhHHHHHhhcC
Confidence 56889999999999 899999999874
No 242
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=42.06 E-value=1.4e+02 Score=27.23 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=22.6
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEc
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFS 239 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLS 239 (279)
...+.+.+++.|+.+.+.+.+.+.+ .+...++||||+.
T Consensus 17 ~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~ 61 (302)
T TIGR02634 17 RDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVII 61 (302)
T ss_pred HHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3456667777788777765543322 1223467888885
No 243
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.91 E-value=94 Score=27.11 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=24.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
..+.+.+++.|+.+.+.+.+.+.+ .+...++||||+.+
T Consensus 22 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~ 66 (268)
T cd06277 22 RAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLG 66 (268)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeC
Confidence 445667777899888776543221 12345799999864
No 244
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=41.62 E-value=1.9e+02 Score=24.52 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=26.5
Q ss_pred HHHHHHHHCCCeEEEE---cCCCC--hhhhhc----cCCCeEEEcCCCC-CCCC
Q 039151 204 NILRRLASYGCQIIVV---PSTWP--ASETLK----LKPDGVLFSNGPG-DPSA 247 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vv---p~~~~--~~~i~~----~~~DgIiLSgGPG-dp~~ 247 (279)
.+...|++.|+++..+ |.+.. .+.+.+ .++|.||++||-| ++.|
T Consensus 26 ~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D 79 (163)
T TIGR02667 26 YLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRD 79 (163)
T ss_pred HHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCC
Confidence 4556788899987644 33311 111211 3699999999876 2444
No 245
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.59 E-value=1.5e+02 Score=25.74 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=25.6
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEc
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFS 239 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLS 239 (279)
...+.+.+.+.|+++.+.+...+.+ .+...++||+|+.
T Consensus 18 ~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~ 62 (267)
T cd06322 18 ANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLS 62 (267)
T ss_pred HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 3556677888999998876543322 1234689999995
No 246
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=41.21 E-value=1.3e+02 Score=26.17 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=35.7
Q ss_pred hHHHHHHHHH-CCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 202 KHNILRRLAS-YGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 202 k~~I~r~L~~-~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
...+.+.+.+ .|+++.+...+.+.+ .+...++||+|+.+. ++. ...+.++.+. .++|++-+
T Consensus 18 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~--~~~---~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 18 RNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPV--DTA---ATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC--chh---hhHHHHHHHHHCCCeEEEe
Confidence 3456777888 899998875433322 223458999999632 221 1223445544 47787643
No 247
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.81 E-value=1.5e+02 Score=26.02 Aligned_cols=39 Identities=8% Similarity=0.099 Sum_probs=26.8
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
...+.+.+++.|+++.+...+.+.+ .+...++||||+++
T Consensus 18 ~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 18 TEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINP 63 (282)
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 3456778888999998876543322 12345899999964
No 248
>PRK03673 hypothetical protein; Provisional
Probab=40.25 E-value=1.9e+02 Score=28.47 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCeEEEEcC-CCChhhhh------ccCCCeEEEcCCCC
Q 039151 204 NILRRLASYGCQIIVVPS-TWPASETL------KLKPDGVLFSNGPG 243 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~-~~~~~~i~------~~~~DgIiLSgGPG 243 (279)
.+.+.|.+.|+++..... ..+.++|. ..+.|.||+|||-|
T Consensus 25 ~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG 71 (396)
T PRK03673 25 WLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG 71 (396)
T ss_pred HHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence 466779999998864432 12333332 13689999999866
No 249
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=40.02 E-value=95 Score=28.18 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=37.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVP 263 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~P 263 (279)
..+.+.|++. ++|.-+... .++| ..++|.+|| .||-.+. .+.++..|++++ ++-+
T Consensus 172 ~~l~~~L~~~-y~V~~~~l~--~~~I-P~~~d~Lvi-~~P~~~l-s~~e~~~l~~yl~~GG~ 227 (271)
T PF09822_consen 172 SSLKSLLEKN-YDVEELNLA--NEEI-PDDADVLVI-AGPKTDL-SEEELYALDQYLMNGGK 227 (271)
T ss_pred HHHHHHHHhc-CceeecCCc--cccc-CCCCCEEEE-ECCCCCC-CHHHHHHHHHHHHcCCe
Confidence 4566777777 877776543 4456 358999999 4665544 357788888888 4444
No 250
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=39.95 E-value=25 Score=33.54 Aligned_cols=35 Identities=34% Similarity=0.698 Sum_probs=26.6
Q ss_pred CCCeEEEcCCCCCCCCC--h-HHHHHHHHHHCCCCEeeec
Q 039151 232 KPDGVLFSNGPGDPSAV--P-YAVAIVKELLGKVPVFGIC 268 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~--~-~~i~~Ir~~~~~~PILGIC 268 (279)
+.|.||| |||||..+ + -.+.-|++++.+.|+..||
T Consensus 185 ~AD~Iii--GPgnp~TSI~P~L~v~gi~eAL~~a~vV~Vs 222 (303)
T PRK13606 185 EADAVII--GPSNPVTSIGPILAVPGIREALTEAPVVAVS 222 (303)
T ss_pred hCCEEEE--CCCccHHhhchhccchhHHHHHhCCCEEEEc
Confidence 6899999 89999754 2 2456677777788998888
No 251
>PLN02979 glycolate oxidase
Probab=39.35 E-value=1.9e+02 Score=28.31 Aligned_cols=81 Identities=26% Similarity=0.402 Sum_probs=49.5
Q ss_pred EcCchHHHHHHHHHC-CCeEEEEcCCCC---hhhhhccCCCeEEEcCCCCCCCC-ChH---HHHHHHHHH-CCCCEe---
Q 039151 198 DFGIKHNILRRLASY-GCQIIVVPSTWP---ASETLKLKPDGVLFSNGPGDPSA-VPY---AVAIVKELL-GKVPVF--- 265 (279)
Q Consensus 198 D~G~k~~I~r~L~~~-G~~v~vvp~~~~---~~~i~~~~~DgIiLSgGPGdp~~-~~~---~i~~Ir~~~-~~~PIL--- 265 (279)
|-...+.-+++|++. +..+. +---.+ +....+...|+|++||.-|--.+ ... .+..+++.+ .++||+
T Consensus 207 ~~~ltW~dl~wlr~~~~~Pvi-vKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dG 285 (366)
T PLN02979 207 DRTLSWKDVQWLQTITKLPIL-VKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDG 285 (366)
T ss_pred CCCCCHHHHHHHHhccCCCEE-eecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeC
Confidence 445667778888875 44433 322123 33344578999999987653322 222 333444555 578887
Q ss_pred eecHHHHHH-HHHcC
Q 039151 266 GICMGHQLL-GQALG 279 (279)
Q Consensus 266 GICLGhQLL-a~AlG 279 (279)
||..|..++ |+|+|
T Consensus 286 GIr~G~Di~KALALG 300 (366)
T PLN02979 286 GVRRGTDVFKALALG 300 (366)
T ss_pred CcCcHHHHHHHHHcC
Confidence 888998887 66766
No 252
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=39.30 E-value=1.6e+02 Score=26.36 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=38.3
Q ss_pred EEEEEEcC--chHHHHHHHHHCCCeEEEEcC---CCChhhhh-ccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEe
Q 039151 193 RVIAYDFG--IKHNILRRLASYGCQIIVVPS---TWPASETL-KLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVF 265 (279)
Q Consensus 193 ~I~viD~G--~k~~I~r~L~~~G~~v~vvp~---~~~~~~i~-~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PIL 265 (279)
+|+++-.- ....+.+.-.+.|+....-+| ..+-..+. ...||.||++ ||.. ....|+++. -++|+.
T Consensus 69 ~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~----dp~~---~~~AI~EA~kl~IP~I 141 (204)
T PRK04020 69 KILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVT----DPRG---DAQAVKEAIEVGIPVV 141 (204)
T ss_pred eEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEE----CCcc---cHHHHHHHHHhCCCEE
Confidence 67777431 123344444555665443333 11111111 1379999996 5554 345566666 599999
Q ss_pred eec
Q 039151 266 GIC 268 (279)
Q Consensus 266 GIC 268 (279)
|||
T Consensus 142 aiv 144 (204)
T PRK04020 142 ALC 144 (204)
T ss_pred EEE
Confidence 999
No 253
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=39.13 E-value=1.7e+02 Score=25.67 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=33.6
Q ss_pred HHHHHHHHHCCCeEEEEc-CCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVP-STWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp-~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI 267 (279)
+.+.+.+++.|+.+.++. .+.+.+ .+...++||+|+.+ .++.. ..+.++++..++|+.-+
T Consensus 18 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~--~~~~~---~~~~l~~~~~~ipvV~~ 85 (271)
T cd06314 18 AGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISP--IDPKA---VIPALNKAAAGIKLITT 85 (271)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEec--CChhH---hHHHHHHHhcCCCEEEe
Confidence 446677888999998873 332221 23345899999973 23221 12333443336666544
No 254
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.10 E-value=1.7e+02 Score=25.89 Aligned_cols=59 Identities=12% Similarity=0.007 Sum_probs=34.2
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEe
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVF 265 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PIL 265 (279)
...+.+.+++.|+.+.+...+.+.+ .+...++||||+.+ .++. ...+.++++. .++|+.
T Consensus 18 ~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~--~~~~---~~~~~i~~~~~~~iPvV 84 (272)
T cd06313 18 KQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDP--LGIG---TLTEAVQKAIARGIPVI 84 (272)
T ss_pred HHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC--CChH---HhHHHHHHHHHCCCcEE
Confidence 3456677788999999886543322 12346799999963 2222 1223344444 466653
No 255
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.08 E-value=1.2e+02 Score=30.06 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=24.9
Q ss_pred cEEEEEEcCch-HHHHHHHHHCCCeEEEEcC
Q 039151 192 YRVIAYDFGIK-HNILRRLASYGCQIIVVPS 221 (279)
Q Consensus 192 ~~I~viD~G~k-~~I~r~L~~~G~~v~vvp~ 221 (279)
.+|+|+-+|.. .+..|.|.++|+++++...
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~ 39 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLF 39 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcC
Confidence 47999999864 4688999999999988764
No 256
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=38.99 E-value=2.2e+02 Score=27.33 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=48.0
Q ss_pred ccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCC-ChhhhhccCCCeEEEcCCC--CCCCC--C----hHHHHHHHHHH--
Q 039151 191 TYRVIAYDFGIKHNILRRLASYGCQIIVVPSTW-PASETLKLKPDGVLFSNGP--GDPSA--V----PYAVAIVKELL-- 259 (279)
Q Consensus 191 ~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~-~~~~i~~~~~DgIiLSgGP--Gdp~~--~----~~~i~~Ir~~~-- 259 (279)
+++++++-+|.... ++.|++.|..+...-.+. -+....+...|+||+-|-- |+.-. . +..++.++...
T Consensus 82 ~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~ 160 (320)
T cd04743 82 KPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGP 160 (320)
T ss_pred CCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcc
Confidence 45777777777654 588999998876442221 2333445689999995421 22211 1 22223332222
Q ss_pred ---CCCCEe---eecHHHHHH
Q 039151 260 ---GKVPVF---GICMGHQLL 274 (279)
Q Consensus 260 ---~~~PIL---GICLGhQLL 274 (279)
.++|++ ||.-|.++-
T Consensus 161 ~~~~~iPViAAGGI~dgr~~a 181 (320)
T cd04743 161 DKAGKIHLLFAGGIHDERSAA 181 (320)
T ss_pred cccCCccEEEEcCCCCHHHHH
Confidence 168987 788887743
No 257
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=38.98 E-value=1.7e+02 Score=27.50 Aligned_cols=83 Identities=23% Similarity=0.315 Sum_probs=48.3
Q ss_pred ccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCC-ChhhhhccCCCeEEEcCC--CCCCCCChHHHHHHHHHH--CCCCEe
Q 039151 191 TYRVIAYDFGIKHNILRRLASYGCQIIVVPSTW-PASETLKLKPDGVLFSNG--PGDPSAVPYAVAIVKELL--GKVPVF 265 (279)
Q Consensus 191 ~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~-~~~~i~~~~~DgIiLSgG--PGdp~~~~~~i~~Ir~~~--~~~PIL 265 (279)
+.+++.+.+|....+++.+++.|+.+...-.+. .+....+..+|+|++.|- -|+.... ..+.+++++. -++|++
T Consensus 87 ~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~-~~~~ll~~v~~~~~iPvi 165 (307)
T TIGR03151 87 KVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGEL-TTMALVPQVVDAVSIPVI 165 (307)
T ss_pred CCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCC-cHHHHHHHHHHHhCCCEE
Confidence 457778888887778999999997654321111 123344568999999552 1221111 2345555554 268987
Q ss_pred ---eecHHHHHH
Q 039151 266 ---GICMGHQLL 274 (279)
Q Consensus 266 ---GICLGhQLL 274 (279)
||.-+.++.
T Consensus 166 aaGGI~~~~~~~ 177 (307)
T TIGR03151 166 AAGGIADGRGMA 177 (307)
T ss_pred EECCCCCHHHHH
Confidence 455555443
No 258
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=38.95 E-value=2.2e+02 Score=28.14 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=25.0
Q ss_pred HHHHHHHHCCCeEEE---EcCCCChhhhh------ccCCCeEEEcCCCC
Q 039151 204 NILRRLASYGCQIIV---VPSTWPASETL------KLKPDGVLFSNGPG 243 (279)
Q Consensus 204 ~I~r~L~~~G~~v~v---vp~~~~~~~i~------~~~~DgIiLSgGPG 243 (279)
.+.+.|.+.|+++.. ++.+ .++|. ..++|-||++||-|
T Consensus 24 ~l~~~L~~~G~~v~~~~~v~Dd--~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 24 WLADFLAHQGLPLSRRTTVGDN--PERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred HHHHHHHHCCCeEEEEEEeCCC--HHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 466778999998763 3332 22221 13799999999854
No 259
>PRK15029 arginine decarboxylase; Provisional
Probab=38.69 E-value=1.3e+02 Score=32.41 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=44.2
Q ss_pred cEEEEEEcCc----------hHHHHHHHHHCCCeEEEEcCCCChhhhh-c-cCCCeEEEcCCCCCCCCC---hHHHHHHH
Q 039151 192 YRVIAYDFGI----------KHNILRRLASYGCQIIVVPSTWPASETL-K-LKPDGVLFSNGPGDPSAV---PYAVAIVK 256 (279)
Q Consensus 192 ~~I~viD~G~----------k~~I~r~L~~~G~~v~vvp~~~~~~~i~-~-~~~DgIiLSgGPGdp~~~---~~~i~~Ir 256 (279)
|+|++||=-. ...+.+.|++.|+++..+....++.+.. . .++|.||+-=.--+..-. ...++.||
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR 80 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLH 80 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHH
Confidence 4688887432 4567788899999998776433333333 3 379999994221111111 13444555
Q ss_pred HHHCCCCEeee
Q 039151 257 ELLGKVPVFGI 267 (279)
Q Consensus 257 ~~~~~~PILGI 267 (279)
+.-.++||+=+
T Consensus 81 ~~~~~iPIIlL 91 (755)
T PRK15029 81 ERQQNVPVFLL 91 (755)
T ss_pred hhCCCCCEEEE
Confidence 43247898755
No 260
>PRK03670 competence damage-inducible protein A; Provisional
Probab=38.48 E-value=1.1e+02 Score=28.29 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCeEEEE---cCCCC--hhhhh---ccCCCeEEEcCCCC
Q 039151 204 NILRRLASYGCQIIVV---PSTWP--ASETL---KLKPDGVLFSNGPG 243 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vv---p~~~~--~~~i~---~~~~DgIiLSgGPG 243 (279)
.+.+.|.++|+++..+ |.+.. .+.+. ...+|.||++||-|
T Consensus 24 ~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG 71 (252)
T PRK03670 24 FIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG 71 (252)
T ss_pred HHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence 3667799999987643 33211 11121 22479999999865
No 261
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.42 E-value=1.6e+02 Score=25.76 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=27.3
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCC
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNG 241 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgG 241 (279)
...+.+.++++|+++.+.....+.+ .+...++||||+.++
T Consensus 18 ~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 18 FSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 4556788888999998876543322 123458999999754
No 262
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=37.93 E-value=1.3e+02 Score=24.76 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=26.1
Q ss_pred HHHHHHHHHCCCeEEEEcCC-CChhhhh----c--cCCCeEEEcCCCC
Q 039151 203 HNILRRLASYGCQIIVVPST-WPASETL----K--LKPDGVLFSNGPG 243 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~-~~~~~i~----~--~~~DgIiLSgGPG 243 (279)
..+.+.|++.|+++..+..- .+.++|. + .++|.||.+||-|
T Consensus 30 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g 77 (144)
T TIGR00177 30 PLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG 77 (144)
T ss_pred HHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 34667788999988754321 2233222 1 3799999999865
No 263
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=37.70 E-value=1.5e+02 Score=24.03 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCeEEEEcC-CCChhhhh----c--cCCCeEEEcCCCC
Q 039151 204 NILRRLASYGCQIIVVPS-TWPASETL----K--LKPDGVLFSNGPG 243 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~-~~~~~~i~----~--~~~DgIiLSgGPG 243 (279)
.+.+.|++.|+++...+. ..+.+++. + .++|.||.+||-|
T Consensus 23 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g 69 (133)
T cd00758 23 ALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG 69 (133)
T ss_pred HHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 455668889998875532 12223222 1 2599999999865
No 264
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=37.66 E-value=34 Score=32.91 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=26.4
Q ss_pred cCCCeEEEcCCCCCCCCC--h-HHHHHHHHHH--CCCCEeeec
Q 039151 231 LKPDGVLFSNGPGDPSAV--P-YAVAIVKELL--GKVPVFGIC 268 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~~~--~-~~i~~Ir~~~--~~~PILGIC 268 (279)
.+.|-|+| |||+|..+ + -.+.-|++++ ...|+.+||
T Consensus 188 ~~AD~Ivi--GPgSl~TSIlP~Lllp~I~eaLr~~~ap~i~v~ 228 (323)
T COG0391 188 KEADLIVI--GPGSLFTSILPILLLPGIAEALRETVAPIVYVC 228 (323)
T ss_pred HhCCEEEE--cCCccHhhhchhhchhHHHHHHHhCCCCEEEec
Confidence 37899999 89998753 2 2345566666 588999999
No 265
>PRK05568 flavodoxin; Provisional
Probab=37.57 E-value=2.1e+02 Score=22.84 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=21.7
Q ss_pred HHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEE
Q 039151 205 ILRRLASYGCQIIVVPST-WPASETLKLKPDGVLF 238 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiL 238 (279)
|.+.+.+.|+++++++.. .+..++ .++|+|+|
T Consensus 22 i~~~~~~~g~~v~~~~~~~~~~~~~--~~~d~iil 54 (142)
T PRK05568 22 IAEGAKENGAEVKLLNVSEASVDDV--KGADVVAL 54 (142)
T ss_pred HHHHHHHCCCeEEEEECCCCCHHHH--HhCCEEEE
Confidence 444455678999988764 334455 37899999
No 266
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=37.44 E-value=58 Score=28.50 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=33.9
Q ss_pred HHHHHHHCCCeE---EEEcCCCC--hhhhh---ccCCCeEEEcCCCC-CCCCChHHHHHHHHHH-CCCC
Q 039151 205 ILRRLASYGCQI---IVVPSTWP--ASETL---KLKPDGVLFSNGPG-DPSAVPYAVAIVKELL-GKVP 263 (279)
Q Consensus 205 I~r~L~~~G~~v---~vvp~~~~--~~~i~---~~~~DgIiLSgGPG-dp~~~~~~i~~Ir~~~-~~~P 263 (279)
+.++|.+.|+++ .++|-+.. ..++. ...+|.|+.+||-| .|.|. ..+.++.++ +.+|
T Consensus 32 l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RDv--TpEA~~~~~dKeip 98 (169)
T COG0521 32 LVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRDV--TPEATRPLFDKEIP 98 (169)
T ss_pred HHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCcC--CHHHHHHHHhccCC
Confidence 667888888877 45554421 11111 12389999999988 35543 345555555 4555
No 267
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=37.42 E-value=1.4e+02 Score=28.21 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=35.8
Q ss_pred HHHHHHHHHCCCeEEEE-cCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVV-PSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vv-p~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+..+++|+++.+. |.+.+.+ .+...++|||+++ |-++. .....++++. .++|+.-+
T Consensus 43 ~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~--~~d~~---al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 43 NGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVS--AVSPD---GLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEe--cCCHH---HHHHHHHHHHHCCCeEEEe
Confidence 34567778899999873 4433322 2334689999996 33333 2334555555 46776544
No 268
>PRK00865 glutamate racemase; Provisional
Probab=37.40 E-value=2.2e+02 Score=25.99 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=45.3
Q ss_pred cEEEEEEcCc-hHHHHHHHHHC--CCeEEEE------cCC-CChhhhh-----------ccCCCeEEEcCCCCCCCCC-h
Q 039151 192 YRVIAYDFGI-KHNILRRLASY--GCQIIVV------PST-WPASETL-----------KLKPDGVLFSNGPGDPSAV-P 249 (279)
Q Consensus 192 ~~I~viD~G~-k~~I~r~L~~~--G~~v~vv------p~~-~~~~~i~-----------~~~~DgIiLSgGPGdp~~~-~ 249 (279)
.+|.++|-|+ --++++.++++ ..++..+ ||- .+.+++. +.++|+|+|+ - +.. .
T Consensus 6 ~~IgvfDSGiGGLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIa---C--NTa~~ 80 (261)
T PRK00865 6 APIGVFDSGVGGLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIA---C--NTASA 80 (261)
T ss_pred CeEEEEECCccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEe---C--chHHH
Confidence 3699999987 34677777654 3444433 442 2344432 3579999994 1 111 1
Q ss_pred HHHHHHHHHHCCCCEeeecHHHHH
Q 039151 250 YAVAIVKELLGKVPVFGICMGHQL 273 (279)
Q Consensus 250 ~~i~~Ir~~~~~~PILGICLGhQL 273 (279)
..++.+|+.. ++|++||=-+...
T Consensus 81 ~~l~~lr~~~-~iPvigi~~a~~~ 103 (261)
T PRK00865 81 VALPDLRERY-DIPVVGIVPAIKP 103 (261)
T ss_pred HHHHHHHHhC-CCCEEeeHHHHHH
Confidence 3567777765 7999995444443
No 269
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.12 E-value=1.8e+02 Score=28.91 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=24.1
Q ss_pred cEEEEEEcCch-HHHHHHHHHCCCeEEEEcC
Q 039151 192 YRVIAYDFGIK-HNILRRLASYGCQIIVVPS 221 (279)
Q Consensus 192 ~~I~viD~G~k-~~I~r~L~~~G~~v~vvp~ 221 (279)
.+|+++.+|.. .++.+.|.++|++|.....
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~ 38 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADT 38 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcC
Confidence 47999999753 3588999999999988764
No 270
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=36.99 E-value=1.7e+02 Score=27.56 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=28.7
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChhh-------hhccCCCeEEEcC
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPASE-------TLKLKPDGVLFSN 240 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~~-------i~~~~~DgIiLSg 240 (279)
-..|-+.+.+.|+.+.+.+.+.+.++ +....+||||+++
T Consensus 77 ~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 77 LKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 35566778889999999987654332 3346899999986
No 271
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.81 E-value=2.1e+02 Score=27.86 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=22.4
Q ss_pred cEEEEEEcCch-HHHHHHHHHCCCeEEEEcC
Q 039151 192 YRVIAYDFGIK-HNILRRLASYGCQIIVVPS 221 (279)
Q Consensus 192 ~~I~viD~G~k-~~I~r~L~~~G~~v~vvp~ 221 (279)
.+|+++..|.. .++.+.|.++|+.|.+...
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~ 36 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDA 36 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 47888888743 3467888889998887753
No 272
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=36.49 E-value=2.6e+02 Score=25.75 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=32.1
Q ss_pred ccEEEEEEcCc----------hHHHHHHHHHCCCeEEEEcCCC-C-hhhhhccCCCeEEE
Q 039151 191 TYRVIAYDFGI----------KHNILRRLASYGCQIIVVPSTW-P-ASETLKLKPDGVLF 238 (279)
Q Consensus 191 ~~~I~viD~G~----------k~~I~r~L~~~G~~v~vvp~~~-~-~~~i~~~~~DgIiL 238 (279)
++||+|+==|. -.++.++|.+.|+++..+..+. . ...+.+.++|.+|.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~ 62 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFV 62 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEE
Confidence 35777775553 1568899999999998775332 1 23344567997776
No 273
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=36.43 E-value=65 Score=24.15 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=30.1
Q ss_pred CCcceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCC
Q 039151 3 WNVANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPS 50 (279)
Q Consensus 3 ~~~~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPS 50 (279)
|-.++-.+.|.||..|.|.--+.+. .+-+|.... .|..++|.
T Consensus 8 ~l~~~v~V~l~dgR~~~G~l~~~D~--~~NivL~~~----~E~~~~~~ 49 (75)
T cd06168 8 LLGRTMRIHMTDGRTLVGVFLCTDR--DCNIILGSA----QEYRPPPD 49 (75)
T ss_pred hcCCeEEEEEcCCeEEEEEEEEEcC--CCcEEecCc----EEEEcccC
Confidence 4445778999999999999988775 466666655 45555443
No 274
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.93 E-value=76 Score=32.62 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=47.1
Q ss_pred ccEEEEEEc-Cc------hHHHHHHHHHCCCeEEEEcCCCC-hh----h----hh-ccCCCeEEEcCCCCCCCCChHHHH
Q 039151 191 TYRVIAYDF-GI------KHNILRRLASYGCQIIVVPSTWP-AS----E----TL-KLKPDGVLFSNGPGDPSAVPYAVA 253 (279)
Q Consensus 191 ~~~I~viD~-G~------k~~I~r~L~~~G~~v~vvp~~~~-~~----~----i~-~~~~DgIiLSgGPGdp~~~~~~i~ 253 (279)
.++|.++-. +- ...+.++|.++|+++.+-+.... .. + .. ..++|.+|.-||=| -.+.
T Consensus 290 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG------T~L~ 363 (569)
T PRK14076 290 PTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDG------TVLR 363 (569)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcH------HHHH
Confidence 457888744 32 23466778889998887542110 00 0 00 12578888888865 3455
Q ss_pred HHHHHH-CCCCEeeecHHH
Q 039151 254 IVKELL-GKVPVFGICMGH 271 (279)
Q Consensus 254 ~Ir~~~-~~~PILGICLGh 271 (279)
..+.+. .++|||||=+|+
T Consensus 364 aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 364 ASKLVNGEEIPIICINMGT 382 (569)
T ss_pred HHHHhcCCCCCEEEEcCCC
Confidence 666665 589999998885
No 275
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=35.81 E-value=70 Score=26.76 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=45.5
Q ss_pred cEEEEEEc-CchH----HHHHHHHHCCCeEEEEcCCC--------Chhhhhc--cCCCeEEEcCCCCCCCCChHHHHHHH
Q 039151 192 YRVIAYDF-GIKH----NILRRLASYGCQIIVVPSTW--------PASETLK--LKPDGVLFSNGPGDPSAVPYAVAIVK 256 (279)
Q Consensus 192 ~~I~viD~-G~k~----~I~r~L~~~G~~v~vvp~~~--------~~~~i~~--~~~DgIiLSgGPGdp~~~~~~i~~Ir 256 (279)
..|+++|+ |+.. .+.+.|+..|+++.|+.+.. ..+.+.+ ..+-++++++. ||.. ..+.++
T Consensus 20 ~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~t~~~~l~~~l~G~~al~f~~~--d~~~---~~k~l~ 94 (157)
T cd05797 20 KSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGTGFEDLDDLLKGPTAIAFSEE--DPVA---AAKVLK 94 (157)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCCchhhHhhCcCCEEEEEeCC--ChHH---HHHHHH
Confidence 36899998 6643 35566777789999887642 2222221 36788888755 4443 334444
Q ss_pred HHH---CCCCEeeecHHHHH
Q 039151 257 ELL---GKVPVFGICMGHQL 273 (279)
Q Consensus 257 ~~~---~~~PILGICLGhQL 273 (279)
++. ...-+.|-|+.-++
T Consensus 95 ~f~k~~~~~~~~gg~~eg~~ 114 (157)
T cd05797 95 DFAKENKKLEIKGGVVEGKV 114 (157)
T ss_pred HHHHhCCCcEEEEEEECCEe
Confidence 444 24566776664443
No 276
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=35.80 E-value=3.4e+02 Score=25.23 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=37.0
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
...+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+. +.. ...+.++.+. .++|+.-+
T Consensus 44 ~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~--~~~---~~~~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 44 RDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY--NGQ---VLSNVIKEAKQEGIKVLAY 112 (330)
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC--Chh---hHHHHHHHHHHCCCeEEEE
Confidence 3456778888999999887654332 123458999999732 111 1123445444 46777655
No 277
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=35.61 E-value=34 Score=32.59 Aligned_cols=35 Identities=34% Similarity=0.650 Sum_probs=26.3
Q ss_pred CCCeEEEcCCCCCCCCC--h-HHHHHHHHHHC--CCCEeeec
Q 039151 232 KPDGVLFSNGPGDPSAV--P-YAVAIVKELLG--KVPVFGIC 268 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~--~-~~i~~Ir~~~~--~~PILGIC 268 (279)
+.|.||| |||||..+ + -.+.-|++++. +-|+..||
T Consensus 183 ~AD~IVl--GPgsp~TSI~P~LlVpgI~eAL~~s~A~vV~Vs 222 (303)
T cd07186 183 DADLVII--GPSNPVTSIGPILALPGIREALRDKKAPVVAVS 222 (303)
T ss_pred hCCEEEE--CCCccHHHhhhhccchhHHHHHHhCCCCEEEEc
Confidence 6899999 89999754 2 24566787773 55999998
No 278
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=35.50 E-value=84 Score=29.25 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=26.7
Q ss_pred CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecH
Q 039151 223 WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICM 269 (279)
Q Consensus 223 ~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICL 269 (279)
.+.+.|.+.+||.||.+++..+.......++.++++ ++|++-++.
T Consensus 82 ~n~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~--gipvv~~~~ 126 (342)
T cd01139 82 FSVEKVLTLKPDLVILNIWAKTTAEESGILEKLEQA--GIPVVFVDF 126 (342)
T ss_pred cCHHHHhhcCCCEEEEeccccccchhhHHHHHHHHc--CCcEEEEeC
Confidence 367888889999988865422111122333444333 678887763
No 279
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=35.48 E-value=1.9e+02 Score=25.12 Aligned_cols=60 Identities=15% Similarity=0.332 Sum_probs=31.7
Q ss_pred HHHHHHHHHC---CC--eEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASY---GC--QIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~---G~--~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.++ |+ ++.++..+.+.+ .+...++||||+.+ .++.... +.++.+. .++|+..+
T Consensus 19 ~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~--~~~~~~~---~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 19 DEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINP--ASPTALN---PVIEEACEAGIPVVSF 91 (272)
T ss_pred HHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeC--CChhhhH---HHHHHHHHCCCeEEEE
Confidence 4455667778 87 445554433322 12245899999964 2222112 2334333 47777654
No 280
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=35.28 E-value=1.5e+02 Score=25.47 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=21.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEc
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFS 239 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLS 239 (279)
..+.+.+++.|+.+.++..+.+.+ .+...++||+|+.
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~ 62 (267)
T cd06284 19 KGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILL 62 (267)
T ss_pred HHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEe
Confidence 445566777788777765543321 1223467888874
No 281
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=34.65 E-value=1.6e+02 Score=25.50 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=23.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------h-hhccCCCeEEEcCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------E-TLKLKPDGVLFSNG 241 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~-i~~~~~DgIiLSgG 241 (279)
..+.+.+++.|+++.++..+...+ + +...++||||+.+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 445667777888888776542211 1 22457888888643
No 282
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=34.47 E-value=1.9e+02 Score=26.67 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=33.5
Q ss_pred cEEEEEEcCchH-HHHHHHHHCCCeEEEEcCC----CChhhhhc---c-CCCeEEEcCCCCCCC
Q 039151 192 YRVIAYDFGIKH-NILRRLASYGCQIIVVPST----WPASETLK---L-KPDGVLFSNGPGDPS 246 (279)
Q Consensus 192 ~~I~viD~G~k~-~I~r~L~~~G~~v~vvp~~----~~~~~i~~---~-~~DgIiLSgGPGdp~ 246 (279)
-+|++.+.+... .+.+.++..|+++..+|.+ .+.+++.+ . +++.|+++. |.+|.
T Consensus 75 ~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~-~~~~~ 137 (356)
T cd06451 75 DKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTH-NETST 137 (356)
T ss_pred CEEEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEec-cCCCc
Confidence 367777765433 2456677789999998754 34455442 2 677888875 34443
No 283
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.26 E-value=2.2e+02 Score=25.40 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=33.9
Q ss_pred HHHHHHHHHCCCeEEEE-cCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVV-PSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vv-p~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.++|+.+.++ +...+.+ .+...++||||+.+ .++... .+.++++. .++|+.-+
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~--~~~~~~---~~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 19 RGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIP--VDPVST---AAAYKKVAEAGIKLVFM 87 (294)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcC--CCchhh---hHHHHHHHHcCCcEEEe
Confidence 44567788899999855 4333322 12235899999963 222211 23344444 47787543
No 284
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=34.22 E-value=1.7e+02 Score=28.69 Aligned_cols=11 Identities=27% Similarity=0.223 Sum_probs=8.8
Q ss_pred CCCeEEEcCCC
Q 039151 232 KPDGVLFSNGP 242 (279)
Q Consensus 232 ~~DgIiLSgGP 242 (279)
++|.||+|+|-
T Consensus 58 ~~d~vV~spgi 68 (448)
T TIGR01082 58 DADVVVVSAAI 68 (448)
T ss_pred CCCEEEECCCC
Confidence 58999998763
No 285
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=34.17 E-value=1.2e+02 Score=23.07 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=14.8
Q ss_pred CCChhhhhccCCCeEEEcCC
Q 039151 222 TWPASETLKLKPDGVLFSNG 241 (279)
Q Consensus 222 ~~~~~~i~~~~~DgIiLSgG 241 (279)
..+.+++...+||.||..++
T Consensus 51 ~~~~E~l~~l~pDlvi~~~~ 70 (148)
T cd00636 51 EPNLEKIAALKPDLIIANGS 70 (148)
T ss_pred CCCHHHHhccCCCEEEEecc
Confidence 35677888889998887654
No 286
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=34.09 E-value=65 Score=26.14 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=40.9
Q ss_pred cEEEEEEcCc-----hHH----HHHHHHHCCCeEEEEcCCCC------------------hhhhhc--cCCCeEEEcCCC
Q 039151 192 YRVIAYDFGI-----KHN----ILRRLASYGCQIIVVPSTWP------------------ASETLK--LKPDGVLFSNGP 242 (279)
Q Consensus 192 ~~I~viD~G~-----k~~----I~r~L~~~G~~v~vvp~~~~------------------~~~i~~--~~~DgIiLSgGP 242 (279)
|||++|.-+. ... +.+.+.+.|++++++....- .+++.+ .+.|+||+.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~--- 77 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFA--- 77 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEE---
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEe---
Confidence 5788886533 222 44555667999999864320 111111 378999993
Q ss_pred CCCCC-------ChHHHHHH----HHHHCCCCEeeecHH
Q 039151 243 GDPSA-------VPYAVAIV----KELLGKVPVFGICMG 270 (279)
Q Consensus 243 Gdp~~-------~~~~i~~I----r~~~~~~PILGICLG 270 (279)
.|.- .+..++.+ +..+.++|+..||-|
T Consensus 78 -sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 78 -SPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp -EEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred -ecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 4421 12233333 223368999888654
No 287
>PRK00549 competence damage-inducible protein A; Provisional
Probab=33.91 E-value=2.4e+02 Score=27.85 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCeEEEE---cCCCChhhhh------ccCCCeEEEcCCCC
Q 039151 204 NILRRLASYGCQIIVV---PSTWPASETL------KLKPDGVLFSNGPG 243 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vv---p~~~~~~~i~------~~~~DgIiLSgGPG 243 (279)
.+.+.|.+.|+++.-+ |.+ .++|. ..+.|-||+|||-|
T Consensus 24 ~L~~~L~~~G~~v~~~~~v~Dd--~~~I~~~l~~a~~~~DlVItTGGlG 70 (414)
T PRK00549 24 FLSEKLAELGIDVYHQTVVGDN--PERLLSALEIAEERSDLIITTGGLG 70 (414)
T ss_pred HHHHHHHHCCCeEEEEEEeCCC--HHHHHHHHHHhccCCCEEEECCCCC
Confidence 4667799999987643 432 22221 24789999999865
No 288
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=33.63 E-value=2.6e+02 Score=24.03 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=22.5
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
..+.+.++++|+.+.+.+.+.+.+ ++...++||+|+.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~ 63 (259)
T cd01542 19 KGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLA 63 (259)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 334566777788887765443222 12245788888863
No 289
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=33.54 E-value=1e+02 Score=25.24 Aligned_cols=38 Identities=24% Similarity=0.423 Sum_probs=25.0
Q ss_pred HHHHHHHHCCCeEE---EEcCCCChhhhh----c--cCCCeEEEcCCCC
Q 039151 204 NILRRLASYGCQII---VVPSTWPASETL----K--LKPDGVLFSNGPG 243 (279)
Q Consensus 204 ~I~r~L~~~G~~v~---vvp~~~~~~~i~----~--~~~DgIiLSgGPG 243 (279)
.+.+.|++.|+++. ++|.+ .+++. . .+.|.||.+||-|
T Consensus 21 ~l~~~l~~~G~~v~~~~~v~Dd--~~~i~~~l~~~~~~~D~VittGG~g 67 (144)
T PF00994_consen 21 FLAALLEELGIEVIRYGIVPDD--PDAIKEALRRALDRADLVITTGGTG 67 (144)
T ss_dssp HHHHHHHHTTEEEEEEEEEESS--HHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred HHHHHHHHcCCeeeEEEEECCC--HHHHHHHHHhhhccCCEEEEcCCcC
Confidence 36677889999876 34433 22222 1 3679999999865
No 290
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=33.42 E-value=1.2e+02 Score=27.00 Aligned_cols=52 Identities=31% Similarity=0.452 Sum_probs=33.3
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCe-EEEEcCCCChhhhhcc-CCCeEEEcCCCCC
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQ-IIVVPSTWPASETLKL-KPDGVLFSNGPGD 244 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~-v~vvp~~~~~~~i~~~-~~DgIiLSgGPGd 244 (279)
..||..||--- -..+-|.+.+.|++ ++++.-+.+ +.+... .||++||.|| ++
T Consensus 58 ~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap-~~L~~~~~~daiFIGGg-~~ 113 (187)
T COG2242 58 SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP-EALPDLPSPDAIFIGGG-GN 113 (187)
T ss_pred CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch-HhhcCCCCCCEEEECCC-CC
Confidence 35899998632 34566778777764 566655432 233333 6999999888 54
No 291
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=33.29 E-value=1.3e+02 Score=25.70 Aligned_cols=66 Identities=14% Similarity=0.252 Sum_probs=43.8
Q ss_pred EcCc--hHHHHHHHHHCCCeEEEEcCCCChhh-hhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecH
Q 039151 198 DFGI--KHNILRRLASYGCQIIVVPSTWPASE-TLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICM 269 (279)
Q Consensus 198 D~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~-i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICL 269 (279)
.||- -..+.+..++.|+.+.++|..+-+.. +.+.+|+++|= .+=.....+-++.+- .++|+.||-+
T Consensus 69 ~Cg~C~Ig~l~~lae~~g~~v~i~~Ggt~ar~~ik~~~p~~iig------VAC~~dL~~g~~~~~~~~ip~~gV~l 138 (158)
T PF01976_consen 69 RCGKCDIGDLKKLAEKYGYKVYIATGGTLARKIIKEYRPKAIIG------VACERDLISGIQDLKPLGIPVQGVLL 138 (158)
T ss_pred CCCCCchhHHHHHHHHcCCEEEEEcChHHHHHHHHHhCCCEEEE------EechHHHHHHHHHHhhcCCCeeEEEe
Confidence 4552 35677777889999999998765443 44678997773 121234555555555 4799999854
No 292
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.28 E-value=2.4e+02 Score=24.48 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=22.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
..+.+.+.+.|+++.+...+.+.+ .+...++||||+.+
T Consensus 19 ~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~ 63 (269)
T cd06293 19 DAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVT 63 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeC
Confidence 345567777888887764432221 22245788888864
No 293
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.25 E-value=1.5e+02 Score=25.79 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=25.6
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEc
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFS 239 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLS 239 (279)
...+.+.+.+.|+.+.+.+.+.+.+ .+....+||||+.
T Consensus 18 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~ 62 (265)
T cd06285 18 YEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILG 62 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3557777888999987766543322 1234589999996
No 294
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=33.00 E-value=65 Score=29.42 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=52.8
Q ss_pred ccEEEEEEc-Cc-------hHHHHHHHHHCCCeEEEEcCCC-Chhhhhc--cCCCeEEEcCCCCCCCCC-----hHHHHH
Q 039151 191 TYRVIAYDF-GI-------KHNILRRLASYGCQIIVVPSTW-PASETLK--LKPDGVLFSNGPGDPSAV-----PYAVAI 254 (279)
Q Consensus 191 ~~~I~viD~-G~-------k~~I~r~L~~~G~~v~vvp~~~-~~~~i~~--~~~DgIiLSgGPGdp~~~-----~~~i~~ 254 (279)
.++|+.|=+ +. .....+.|.++||.+.-++-.. +.++|.+ .+.|.|.+.||- ...-. ....+.
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGN-TF~LL~~lke~gld~i 110 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGN-TFNLLQELKETGLDDI 110 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCch-HHHHHHHHHHhCcHHH
Confidence 346777755 22 1234567899999998887543 4555543 368999997663 22211 134667
Q ss_pred HHHHH-CCCCEeeecHHH
Q 039151 255 VKELL-GKVPVFGICMGH 271 (279)
Q Consensus 255 Ir~~~-~~~PILGICLGh 271 (279)
||+.. .++|.+|+--|.
T Consensus 111 Ir~~vk~G~~YiG~SAGA 128 (224)
T COG3340 111 IRERVKAGTPYIGWSAGA 128 (224)
T ss_pred HHHHHHcCCceEEeccCc
Confidence 88888 799999998775
No 295
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.86 E-value=2e+02 Score=25.02 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=33.1
Q ss_pred hHHHHHHHHH--CCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 202 KHNILRRLAS--YGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 202 k~~I~r~L~~--~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
...+.+.+.+ .|+.+.+++...+.+ .+...++||||+.+ .++... .+.++.+. .++|+.-+
T Consensus 18 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~--~~~~~~---~~~i~~~~~~~ipvv~~ 88 (271)
T cd06321 18 AKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNA--VDSKGI---APAVKRAQAAGIVVVAV 88 (271)
T ss_pred HHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeC--CChhHh---HHHHHHHHHCCCeEEEe
Confidence 3456677888 666766665443322 12245899999953 233211 23344444 36676544
No 296
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.83 E-value=2.3e+02 Score=28.32 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=21.4
Q ss_pred cEEEEEEcCch-HHHHHHHHHCCCeEEEEc
Q 039151 192 YRVIAYDFGIK-HNILRRLASYGCQIIVVP 220 (279)
Q Consensus 192 ~~I~viD~G~k-~~I~r~L~~~G~~v~vvp 220 (279)
.+|+|+-+|.. .+.++.|..+|+++.+..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D 42 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCD 42 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEc
Confidence 47888888764 345677888888888765
No 297
>PF06218 NPR2: Nitrogen permease regulator 2; InterPro: IPR009348 This family of regulators are involved in post-translational control of nitrogen permease.
Probab=32.70 E-value=9.2 Score=38.10 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=32.0
Q ss_pred CccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEE
Q 039151 93 SNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVL 135 (279)
Q Consensus 93 s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i 135 (279)
+..+...|+.+|+++|.-. +.+||=|+|+. .|.++|.|
T Consensus 331 ~sl~~G~tl~dw~~~~~~~-~~~IDvRRfI~----FGvikGfi 368 (428)
T PF06218_consen 331 CSLQQGLTLKDWCERHSPR-LNNIDVRRFIQ----FGVIKGFI 368 (428)
T ss_pred HhccCCCCHHHHHHHhhHh-hcCCChHHhhH----HHHHHHHH
Confidence 4456789999999999877 69999999887 68888876
No 298
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=32.57 E-value=2e+02 Score=22.21 Aligned_cols=67 Identities=25% Similarity=0.292 Sum_probs=40.7
Q ss_pred HHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEe-------eecHHHHH
Q 039151 204 NILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVF-------GICMGHQL 273 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PIL-------GICLGhQL 273 (279)
.+-+.+.++|.++.+...... .++. ..++|.|+++ |+ .....+.+++.. .++|+. |-+-|..+
T Consensus 18 ki~~~~~~~~~~~~v~~~~~~~~~~~-~~~~Diil~~-----Pq-v~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~dg~~i 90 (96)
T cd05564 18 KMKKAAEKRGIDAEIEAVPESELEEY-IDDADVVLLG-----PQ-VRYMLDEVKKKAAEYGIPVAVIDMMDYGMMNGEKV 90 (96)
T ss_pred HHHHHHHHCCCceEEEEecHHHHHHh-cCCCCEEEEC-----hh-HHHHHHHHHHHhccCCCcEEEcChHhcccCCHHHH
Confidence 456778889998887755432 2222 2478988884 44 345667777654 467775 44555555
Q ss_pred HHHH
Q 039151 274 LGQA 277 (279)
Q Consensus 274 La~A 277 (279)
|..+
T Consensus 91 l~~~ 94 (96)
T cd05564 91 LKQA 94 (96)
T ss_pred HHHH
Confidence 5544
No 299
>PRK09271 flavodoxin; Provisional
Probab=32.55 E-value=2.3e+02 Score=23.65 Aligned_cols=35 Identities=20% Similarity=0.072 Sum_probs=20.6
Q ss_pred HHHHHHHCCCeEEEEcCCC-Chhhhh--ccCCCeEEEc
Q 039151 205 ILRRLASYGCQIIVVPSTW-PASETL--KLKPDGVLFS 239 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~~-~~~~i~--~~~~DgIiLS 239 (279)
|.+.|...|.++.+..... +..++. ..++|+|+|.
T Consensus 21 ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilg 58 (160)
T PRK09271 21 IEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLG 58 (160)
T ss_pred HHHHHHhCCCeeEEEecccccccccccCcccCCEEEEE
Confidence 4556677898887765432 222211 1368999983
No 300
>PRK06849 hypothetical protein; Provisional
Probab=32.26 E-value=2.4e+02 Score=26.87 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=26.0
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCC
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPST 222 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~ 222 (279)
+++|+|+..+. ...++|+|.+.|++|.++..+
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899998765 457999999999999988544
No 301
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=32.21 E-value=1.6e+02 Score=23.61 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=35.2
Q ss_pred HHHHHHH-CCCeEEEEcC--CC-C---hhhhhccCCCeEEEcCCCCCCCC-ChHHHHHHHHHH-CCCCEe
Q 039151 205 ILRRLAS-YGCQIIVVPS--TW-P---ASETLKLKPDGVLFSNGPGDPSA-VPYAVAIVKELL-GKVPVF 265 (279)
Q Consensus 205 I~r~L~~-~G~~v~vvp~--~~-~---~~~i~~~~~DgIiLSgGPGdp~~-~~~~i~~Ir~~~-~~~PIL 265 (279)
-.++|++ .|..++.++. .- + .+.+.+.++|.||-.+.|.+... .......-|.++ .++|++
T Consensus 36 Ta~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~ 105 (115)
T cd01422 36 TGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLA 105 (115)
T ss_pred HHHHHHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEE
Confidence 3566777 7888876642 11 1 22344568999999877722222 223333444455 689976
No 302
>PRK05569 flavodoxin; Provisional
Probab=31.97 E-value=1.5e+02 Score=23.77 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=21.4
Q ss_pred HHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEE
Q 039151 205 ILRRLASYGCQIIVVPST-WPASETLKLKPDGVLF 238 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiL 238 (279)
|.+.+.+.|+++++++.. .+..++ .++|+|+|
T Consensus 22 i~~~~~~~g~~v~~~~~~~~~~~~~--~~~d~iil 54 (141)
T PRK05569 22 IADGAKEAGAEVTIKHVADAKVEDV--LEADAVAF 54 (141)
T ss_pred HHHHHHhCCCeEEEEECCcCCHHHH--hhCCEEEE
Confidence 444455578998888754 344455 37999999
No 303
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=31.95 E-value=2.4e+02 Score=25.42 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=24.8
Q ss_pred HHHHHHHHHCCCeEEEE-cCCCChh-------hhhccCCCeEEEc
Q 039151 203 HNILRRLASYGCQIIVV-PSTWPAS-------ETLKLKPDGVLFS 239 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vv-p~~~~~~-------~i~~~~~DgIiLS 239 (279)
..+.+.+.+.|+.+.++ +.+.+.+ .+...++||||+.
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~ 63 (298)
T cd06302 19 EGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVV 63 (298)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 45667788899999875 5443322 1223589999996
No 304
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=31.77 E-value=2.7e+02 Score=27.33 Aligned_cols=81 Identities=21% Similarity=0.381 Sum_probs=47.0
Q ss_pred EcCchHHHHHHHHHC-CCeEEEEcCCCChh---hhhccCCCeEEEcCCCCCCCC-Ch---HHHHHHHHHH-CCCCEe---
Q 039151 198 DFGIKHNILRRLASY-GCQIIVVPSTWPAS---ETLKLKPDGVLFSNGPGDPSA-VP---YAVAIVKELL-GKVPVF--- 265 (279)
Q Consensus 198 D~G~k~~I~r~L~~~-G~~v~vvp~~~~~~---~i~~~~~DgIiLSgGPGdp~~-~~---~~i~~Ir~~~-~~~PIL--- 265 (279)
|-...+.-+++|++. +..+.+--. .+.+ ...+...|+|++||.-|.-.+ .. ..+..|++.+ .++||+
T Consensus 229 ~~~ltW~di~~lr~~~~~pvivKgV-~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dG 307 (381)
T PRK11197 229 DPSISWKDLEWIRDFWDGPMVIKGI-LDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADS 307 (381)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEec-CCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeC
Confidence 444556667777664 444433222 3333 344568999999987664322 12 2334445555 478988
Q ss_pred eecHHHHHH-HHHcC
Q 039151 266 GICMGHQLL-GQALG 279 (279)
Q Consensus 266 GICLGhQLL-a~AlG 279 (279)
||-.|..++ |+|+|
T Consensus 308 GIr~g~Di~KALaLG 322 (381)
T PRK11197 308 GIRNGLDVVRMIALG 322 (381)
T ss_pred CcCcHHHHHHHHHcC
Confidence 677777766 55555
No 305
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=31.51 E-value=97 Score=25.91 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=29.7
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEEcCC
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNG 241 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiLSgG 241 (279)
+.-+.+.|+..|++|.-+..+.+++++. +.++|.|-+|.=
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l 61 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSL 61 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 3445567888999998887777777654 358999999853
No 306
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=31.20 E-value=2.6e+02 Score=24.30 Aligned_cols=60 Identities=18% Similarity=0.352 Sum_probs=33.6
Q ss_pred HHHHHHHHHC-CCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASY-GCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~-G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+. |+.+.+.....+.+ .+...++||||+.+ .++.... +.++.+. .++|+.-+
T Consensus 19 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~--~~~~~~~---~~~~~~~~~~ipvV~~ 87 (270)
T cd06308 19 DEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISP--NEAAPLT---PVVEEAYRAGIPVILL 87 (270)
T ss_pred HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEec--Cchhhch---HHHHHHHHCCCCEEEe
Confidence 4455667775 88888775433221 12245899999964 2333222 2334333 57787655
No 307
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=30.92 E-value=2.5e+02 Score=25.57 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=25.7
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNG 241 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgG 241 (279)
..+.+.+.+.|+++.++....+.+ .+...++||||+.+.
T Consensus 79 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 79 EAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 445567778899988876443322 223457999999764
No 308
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=30.86 E-value=2.5e+02 Score=24.61 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=25.9
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCCh--hh-----hhccCCCeEEEcC
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPA--SE-----TLKLKPDGVLFSN 240 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~--~~-----i~~~~~DgIiLSg 240 (279)
...+.+.+.++|+.+.+...+.+. .+ +...++||||+.+
T Consensus 18 ~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~ 63 (269)
T cd06297 18 LEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLAS 63 (269)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 355777888899999887654321 11 2235799999974
No 309
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.78 E-value=2.5e+02 Score=25.40 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=34.6
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhcc--CCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEee
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKL--KPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFG 266 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~--~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILG 266 (279)
...+.+.+.++|+.+.++..+.+.+ .+... ++||||+.+. ++ ... +.++.+. .++|+.-
T Consensus 19 ~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~--~~-~~~---~~~~~~~~~giPvV~ 87 (305)
T cd06324 19 ARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE--KS-VAP---ELLRLAEGAGVKLFL 87 (305)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC--cc-chH---HHHHHHHhCCCeEEE
Confidence 3456677888999998876543322 23345 8999999643 22 112 2344444 4677653
No 310
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.74 E-value=2.4e+02 Score=21.46 Aligned_cols=68 Identities=19% Similarity=0.095 Sum_probs=40.4
Q ss_pred EEEEEc--CchHHHHHHHHHCCCeEEEE--cCCC-Chh-hhhc--cCCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCC
Q 039151 194 VIAYDF--GIKHNILRRLASYGCQIIVV--PSTW-PAS-ETLK--LKPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVP 263 (279)
Q Consensus 194 I~viD~--G~k~~I~r~L~~~G~~v~vv--p~~~-~~~-~i~~--~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~P 263 (279)
|++|-- .....+-+.+++.|++.... +... ... .+.. .++|.||+.-+-- .......+++.. .++|
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~v----sH~~~~~vk~~akk~~ip 77 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYV----SHNAMWKVKKAAKKYGIP 77 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCc----ChHHHHHHHHHHHHcCCc
Confidence 455543 34667888899999999888 2221 111 1322 3679999853321 234556666665 4788
Q ss_pred Ee
Q 039151 264 VF 265 (279)
Q Consensus 264 IL 265 (279)
+.
T Consensus 78 ~~ 79 (97)
T PF10087_consen 78 II 79 (97)
T ss_pred EE
Confidence 65
No 311
>PRK09701 D-allose transporter subunit; Provisional
Probab=30.65 E-value=2.6e+02 Score=25.50 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCCeEEEEc--CCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVP--STWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp--~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.++. ...+.+ .+...++|||||.+. ++... .+.+.++. .++|+.-+
T Consensus 44 ~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~--~~~~~---~~~l~~~~~~giPvV~~ 113 (311)
T PRK09701 44 KGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL--SSVNL---VMPVARAWKKGIYLVNL 113 (311)
T ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC--ChHHH---HHHHHHHHHCCCcEEEe
Confidence 456677888899998873 222221 223457999999743 22211 12233333 46777644
No 312
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=30.59 E-value=2e+02 Score=25.31 Aligned_cols=60 Identities=10% Similarity=0.216 Sum_probs=34.8
Q ss_pred hHHHHHHHHHCCCeEEEEcCCC--Chh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 202 KHNILRRLASYGCQIIVVPSTW--PAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~--~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
...+.+.+++.|+++.++..+. +.+ .+...++||||+.+. ++. ... .++++. .++|++-+
T Consensus 18 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~--~~~---~~~-~~~~~~~~giPvV~~ 87 (268)
T cd06306 18 NYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAV--SPD---GLN-EILQQVAASIPVIAL 87 (268)
T ss_pred HHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC--Chh---hHH-HHHHHHHCCCCEEEe
Confidence 3456677888999998885431 221 122468999999632 221 111 334444 57887543
No 313
>PRK04148 hypothetical protein; Provisional
Probab=30.51 E-value=1.2e+02 Score=25.41 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=27.1
Q ss_pred ccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCC
Q 039151 191 TYRVIAYDFGIKHNILRRLASYGCQIIVVPSTW 223 (279)
Q Consensus 191 ~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~ 223 (279)
+.+|+.|-+|+-.++.+.|.+.|++|+.+..+.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH
Confidence 468999999965678899999999999987653
No 314
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=30.47 E-value=2.6e+02 Score=25.26 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=36.3
Q ss_pred HHHHHHHHH--CCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLAS--YGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~--~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+ .|+.+.+.+.+.+.+ .+...++||+|+.+ .++. ...+.++++. .++|+.-+
T Consensus 19 ~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~--~~~~---~~~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 19 KNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNL--VDPT---AAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred HHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEec--Cchh---hHHHHHHHHHHCCCCEEEe
Confidence 456677777 788888877653322 23346899999964 2332 1234455555 47887644
No 315
>PRK05939 hypothetical protein; Provisional
Probab=30.46 E-value=3.3e+02 Score=26.38 Aligned_cols=65 Identities=15% Similarity=0.262 Sum_probs=40.0
Q ss_pred EEEEEE--cCchHHHHHHHHHCCCeEEEEcCCCChhhhhc---cCCCeEEEcCCCCCCCCChHHHHHHHHHH
Q 039151 193 RVIAYD--FGIKHNILRRLASYGCQIIVVPSTWPASETLK---LKPDGVLFSNGPGDPSAVPYAVAIVKELL 259 (279)
Q Consensus 193 ~I~viD--~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~---~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~ 259 (279)
+|++.+ |+....+++.+...|+++..++.. +.+++.+ .+.+.|++ ..|.+|.-....++.|.++.
T Consensus 88 ~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~-d~e~l~~~l~~~tklV~v-esp~NptG~v~dl~~I~~la 157 (397)
T PRK05939 88 HLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT-DVQNVAAAIRPNTRMVFV-ETIANPGTQVADLAGIGALC 157 (397)
T ss_pred EEEECCCccccHHHHHHHHHhcCCEEEEECCC-CHHHHHHhCCCCCeEEEE-ECCCCCCCCHHhHHHHHHHH
Confidence 566665 355566677788889999988753 4445432 35566666 57888864333444444444
No 316
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=30.45 E-value=1e+02 Score=31.56 Aligned_cols=74 Identities=24% Similarity=0.231 Sum_probs=45.0
Q ss_pred cEEEEEEc-Cc------hHHHHHHHH-HCCCeEEEEcCCCC-----------------hhhh--hccCCCeEEEcCCCCC
Q 039151 192 YRVIAYDF-GI------KHNILRRLA-SYGCQIIVVPSTWP-----------------ASET--LKLKPDGVLFSNGPGD 244 (279)
Q Consensus 192 ~~I~viD~-G~------k~~I~r~L~-~~G~~v~vvp~~~~-----------------~~~i--~~~~~DgIiLSgGPGd 244 (279)
.+|+++=. +- ...+.++|. +.|+++.+-+.... ..++ ...++|.||.-||=|
T Consensus 195 ~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDG- 273 (508)
T PLN02935 195 QTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDG- 273 (508)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCcH-
Confidence 46777743 22 234667787 58888877542110 0111 113589888888865
Q ss_pred CCCChHHHHHHHHHH-CCCCEeeecHHH
Q 039151 245 PSAVPYAVAIVKELL-GKVPVFGICMGH 271 (279)
Q Consensus 245 p~~~~~~i~~Ir~~~-~~~PILGICLGh 271 (279)
-.+...+.+. ..+|||||=+|+
T Consensus 274 -----TlL~Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 274 -----TVLWAASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred -----HHHHHHHHhccCCCcEEEEeCCC
Confidence 3455556555 478999998885
No 317
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=30.38 E-value=2.8e+02 Score=26.62 Aligned_cols=88 Identities=14% Similarity=0.224 Sum_probs=48.8
Q ss_pred cEEEEEEc--CchHHH---HHHHHHCC-CeEEEEcCCCC---hhhhhccCCCeEEEcCCCCCCC---------CChHHHH
Q 039151 192 YRVIAYDF--GIKHNI---LRRLASYG-CQIIVVPSTWP---ASETLKLKPDGVLFSNGPGDPS---------AVPYAVA 253 (279)
Q Consensus 192 ~~I~viD~--G~k~~I---~r~L~~~G-~~v~vvp~~~~---~~~i~~~~~DgIiLSgGPGdp~---------~~~~~i~ 253 (279)
..++++|. |-...+ ++++++.- ....+...-.+ +..+.+...|+|.++.|||... ...+.+.
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ 188 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLA 188 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHH
Confidence 57999997 554443 55665532 22233332223 3345567899999999999742 1112344
Q ss_pred HHHHHH--CCCCEee---ecHHHHHH-HHHcC
Q 039151 254 IVKELL--GKVPVFG---ICMGHQLL-GQALG 279 (279)
Q Consensus 254 ~Ir~~~--~~~PILG---ICLGhQLL-a~AlG 279 (279)
.|.++. .++||++ |-.|.-+. |+|+|
T Consensus 189 ai~ev~~a~~~pVIadGGIr~~~Di~KALa~G 220 (321)
T TIGR01306 189 ALRWCAKAARKPIIADGGIRTHGDIAKSIRFG 220 (321)
T ss_pred HHHHHHHhcCCeEEEECCcCcHHHHHHHHHcC
Confidence 454444 3788874 44444433 44443
No 318
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.22 E-value=2.3e+02 Score=28.10 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=40.7
Q ss_pred EEEEEEcC--chHHHHHH-HHHCCCeEEEEcCCCChhhhh---ccCCCeEEEcCCCCCCCCChHHHHHHHHHH
Q 039151 193 RVIAYDFG--IKHNILRR-LASYGCQIIVVPSTWPASETL---KLKPDGVLFSNGPGDPSAVPYAVAIVKELL 259 (279)
Q Consensus 193 ~I~viD~G--~k~~I~r~-L~~~G~~v~vvp~~~~~~~i~---~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~ 259 (279)
+|++-++. ...++++. +...|++++.+....+.+++. ..+.+.|++ .-||+|.-.-..++.|.++.
T Consensus 102 ~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~~-e~pgnP~~~v~Di~~I~~iA 173 (432)
T PRK06702 102 HLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVYA-ESLGNPAMNVLNFKEFSDAA 173 (432)
T ss_pred EEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEEE-EcCCCccccccCHHHHHHHH
Confidence 67777754 35565554 688999999887655555543 235566665 66999983222244444444
No 319
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=30.21 E-value=2.1e+02 Score=23.40 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=37.5
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEee
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFG 266 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILG 266 (279)
-....+.|.+.|..+.+++.+.+ + .+|+.||++.-. ...+...+.|+++. ++.-++|
T Consensus 28 ~~~~~~~l~~~gi~~d~v~~~~~---l--~~y~~vi~P~~~---~~~~~~~~~l~~~v~~GG~li~~ 86 (154)
T cd03143 28 ALALYRALRELGIPVDVVPPDAD---L--SGYKLVVLPDLY---LLSDATAAALRAYVENGGTLVAG 86 (154)
T ss_pred HHHHHHHHHHCCCCEEEECCCCC---c--ccCCEEEECchh---cCCHHHHHHHHHHHHCCCEEEEe
Confidence 34577899999999999985432 2 268999985332 22345677888877 3444443
No 320
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.20 E-value=2.8e+02 Score=23.94 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=22.0
Q ss_pred HHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 204 NILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
.+.+.+++.|+.+.+++.+.+.+ .+...++||+|+.+
T Consensus 20 gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~ 63 (265)
T cd06290 20 GMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLG 63 (265)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeC
Confidence 34566677788877765543322 12234688888863
No 321
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=30.18 E-value=98 Score=27.16 Aligned_cols=61 Identities=21% Similarity=0.145 Sum_probs=36.4
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh----HHHHHHH---HHHCCCCEeeecHH
Q 039151 205 ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP----YAVAIVK---ELLGKVPVFGICMG 270 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~----~~i~~Ir---~~~~~~PILGICLG 270 (279)
|...|++.|.+|++.+.+.- .++.-.++|.||| |.|-... ..-.+++ +.+.++|..=+|.+
T Consensus 21 iA~~L~e~g~qvdi~dl~~~-~~~~l~~ydavVI----gAsI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vn 88 (175)
T COG4635 21 IASHLRESGIQVDIQDLHAV-EEPALEDYDAVVI----GASIRYGHFHEAVQSFVKKHAEALSTKPSAFFSVN 88 (175)
T ss_pred HHHHhhhcCCeeeeeehhhh-hccChhhCceEEE----ecchhhhhhHHHHHHHHHHHHHHHhcCCceEEEee
Confidence 44557788999999986432 2222248999999 3443222 2223343 33468888777754
No 322
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=29.80 E-value=1.5e+02 Score=25.27 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=19.7
Q ss_pred ecCCCEEEEEeeCCCcceeeeEEEe
Q 039151 12 LEDGSIWRAKSFGASGTQVGEVVFN 36 (279)
Q Consensus 12 LedG~~f~G~~fG~~~~~~GEvVFn 36 (279)
|+.+.-|.-.+|+..+.+.||+||-
T Consensus 3 ~~~~~df~~~~~s~sg~vtg~lVfv 27 (151)
T cd04822 3 LELEKDFVPFAFSRSGAVTAPVVFA 27 (151)
T ss_pred cccccceeeeccCCCCCceEeEEEe
Confidence 4566668777788888899999994
No 323
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=29.78 E-value=63 Score=30.53 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=28.7
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeecH
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGICM 269 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGICL 269 (279)
+.|+|.++-|||...-..--+...|.+. -++|+.+|..
T Consensus 70 ~id~iav~~GPGsftglrig~~~Ak~la~~~~~p~~~v~h 109 (314)
T TIGR03723 70 DIDAIAVTAGPGLIGALLVGVSFAKALALALNKPLIGVNH 109 (314)
T ss_pred HCCEEEEecCCChHHhHHHHHHHHHHHHHHhCCCEEeccc
Confidence 4689999999998765555555566554 4899999974
No 324
>PRK08227 autoinducer 2 aldolase; Validated
Probab=29.71 E-value=94 Score=28.98 Aligned_cols=64 Identities=19% Similarity=0.138 Sum_probs=44.3
Q ss_pred HHHHHHCCCeEEEEcCCC-ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecHHHH
Q 039151 206 LRRLASYGCQIIVVPSTW-PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQ 272 (279)
Q Consensus 206 ~r~L~~~G~~v~vvp~~~-~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICLGhQ 272 (279)
.|.-.++|+++.=++|.- +++++-+..+--|+++|||-. . ....++.++.++.. =-.|||.|=-
T Consensus 164 aRiaaELGADiVK~~y~~~~f~~vv~a~~vPVviaGG~k~-~-~~~~L~~v~~ai~a-Ga~Gv~~GRN 228 (264)
T PRK08227 164 TRIAAEMGAQIIKTYYVEEGFERITAGCPVPIVIAGGKKL-P-ERDALEMCYQAIDE-GASGVDMGRN 228 (264)
T ss_pred HHHHHHHcCCEEecCCCHHHHHHHHHcCCCcEEEeCCCCC-C-HHHHHHHHHHHHHc-CCceeeechh
Confidence 355567899988777643 455555556778999999975 2 35678888888831 1578888743
No 325
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=29.68 E-value=2.2e+02 Score=30.44 Aligned_cols=49 Identities=10% Similarity=-0.034 Sum_probs=31.3
Q ss_pred EEEEEEcCch--HHHHHHHHHCCCeEEEEcCCCC--hhhhhc--------------cCCCeEEEcCC
Q 039151 193 RVIAYDFGIK--HNILRRLASYGCQIIVVPSTWP--ASETLK--------------LKPDGVLFSNG 241 (279)
Q Consensus 193 ~I~viD~G~k--~~I~r~L~~~G~~v~vvp~~~~--~~~i~~--------------~~~DgIiLSgG 241 (279)
+|+++-.|.. ..+.+.|.++|++|.+...... .+++.+ ..+|-||+|+|
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~Spg 72 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSS 72 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCC
Confidence 5778877653 3357888888988887754321 112211 15789999877
No 326
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=29.49 E-value=67 Score=28.66 Aligned_cols=31 Identities=29% Similarity=0.577 Sum_probs=23.1
Q ss_pred cCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 231 LKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
..||.||+. ||.. ....|+++. -++|+.|||
T Consensus 107 ~~Pdlliv~----dp~~---~~~Av~EA~~l~IP~Iai~ 138 (196)
T TIGR01012 107 REPEVVVVT----DPRA---DHQALKEASEVGIPIVALC 138 (196)
T ss_pred CCCCEEEEE----CCcc---ccHHHHHHHHcCCCEEEEe
Confidence 369999996 5554 345567776 599999999
No 327
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=29.44 E-value=1e+02 Score=28.22 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=29.8
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecHHHHHHHHHcC
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICLGhQLLa~AlG 279 (279)
..|+++|+ -++. ..+..+|+. ..+|+.|||--.-+.|...|
T Consensus 69 GvdaiiIa-----Cf~D-Pgl~~~Re~-~~~PviGi~eAsv~~A~~vg 109 (230)
T COG4126 69 GVDAIIIA-----CFSD-PGLAAARER-AAIPVIGICEASVLAALFVG 109 (230)
T ss_pred CCcEEEEE-----ecCC-hHHHHHHHH-hCCCceehhHHHHHHHHHhc
Confidence 68999995 2222 566777766 36899999988877777654
No 328
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=29.39 E-value=2.9e+02 Score=25.75 Aligned_cols=75 Identities=19% Similarity=0.339 Sum_probs=49.7
Q ss_pred ccEEEEEEc--Cc-hHHHHHHHHHCC--CeEEEEcCCC----Chhhhh-------cc----CCCeEEEcCCCCCCCCCh-
Q 039151 191 TYRVIAYDF--GI-KHNILRRLASYG--CQIIVVPSTW----PASETL-------KL----KPDGVLFSNGPGDPSAVP- 249 (279)
Q Consensus 191 ~~~I~viD~--G~-k~~I~r~L~~~G--~~v~vvp~~~----~~~~i~-------~~----~~DgIiLSgGPGdp~~~~- 249 (279)
..+|+||-- |. .+.+++.+.+++ +++.++|... .+.+|. .. .+|.|||.=|-|+-.|.-
T Consensus 14 p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~ 93 (319)
T PF02601_consen 14 PKRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWA 93 (319)
T ss_pred CCEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcc
Confidence 458999975 43 577888887764 6777778753 333332 12 489999988888866532
Q ss_pred -HHHHHHHHHH-CCCCEe
Q 039151 250 -YAVAIVKELL-GKVPVF 265 (279)
Q Consensus 250 -~~i~~Ir~~~-~~~PIL 265 (279)
......|.+. ..+||+
T Consensus 94 FN~e~varai~~~~~Pvi 111 (319)
T PF02601_consen 94 FNDEEVARAIAASPIPVI 111 (319)
T ss_pred cChHHHHHHHHhCCCCEE
Confidence 2344556655 589986
No 329
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=29.27 E-value=2.4e+02 Score=25.72 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=26.1
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNG 241 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgG 241 (279)
..+.+.+.++|+.+.+++...+.+ .+...++||||+.+.
T Consensus 84 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 129 (342)
T PRK10014 84 AGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGA 129 (342)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 446677888999988776543322 123457999999754
No 330
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=28.95 E-value=3.3e+02 Score=23.12 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=23.0
Q ss_pred HHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 204 NILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
.+.+.+.++|+.+.+++.+.+.+ ++...++||||+.+
T Consensus 20 ~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~ 63 (267)
T cd01536 20 GAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISP 63 (267)
T ss_pred HHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34456667888888876643321 23334788888854
No 331
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=28.95 E-value=3.6e+02 Score=24.25 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=40.0
Q ss_pred CchHHHHHHHHHCCCeEEEEcCCC-----ChhhhhccCCCeEEE-cCCCCCCCCChHHHHHHHHHH-CCCCEeeecH
Q 039151 200 GIKHNILRRLASYGCQIIVVPSTW-----PASETLKLKPDGVLF-SNGPGDPSAVPYAVAIVKELL-GKVPVFGICM 269 (279)
Q Consensus 200 G~k~~I~r~L~~~G~~v~vvp~~~-----~~~~i~~~~~DgIiL-SgGPGdp~~~~~~i~~Ir~~~-~~~PILGICL 269 (279)
|+...|...|++.|++|++...+. +.+.+ .++|.||+ ++.-++.- .+...+.+.+++ .+.=++|+=-
T Consensus 23 ~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L--~~~D~lV~~~~~~~~~l-~~eq~~~l~~~V~~GgGlv~lHs 96 (215)
T cd03142 23 GMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVL--AETDVLLWWGHIAHDEV-KDEIVERVHRRVLDGMGLIVLHS 96 (215)
T ss_pred hHHHHHHHHHHhcCcEEEEEeccCccccCCHhHH--hcCCEEEEeCCCCcCcC-CHHHHHHHHHHHHcCCCEEEECC
Confidence 677778888999999998554322 12223 37999998 33322322 234455555555 5666666643
No 332
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.86 E-value=2.1e+02 Score=25.44 Aligned_cols=39 Identities=15% Similarity=0.397 Sum_probs=26.3
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
...+.+.+.+.|+.+.+.....+.+ .+...++|||||.+
T Consensus 19 ~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~ 64 (280)
T cd06315 19 GEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGG 64 (280)
T ss_pred HHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3456677888999988875543322 12246899999974
No 333
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.83 E-value=3.1e+02 Score=23.52 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=22.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~------~i~~~~~DgIiLSg 240 (279)
..+.+.+++.|+.+.++..+.+.+ .+...++||+|+.+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~ 62 (266)
T cd06278 19 EALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTS 62 (266)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEec
Confidence 345566777888887775543211 12235788888853
No 334
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=28.71 E-value=1.2e+02 Score=25.97 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=45.5
Q ss_pred EEEEEEc-CchH----HHHHHHHHCCCeEEEEcCCC--------Chhhhhc--cCCCeEEEcCCCCCCCCChHHHHHHHH
Q 039151 193 RVIAYDF-GIKH----NILRRLASYGCQIIVVPSTW--------PASETLK--LKPDGVLFSNGPGDPSAVPYAVAIVKE 257 (279)
Q Consensus 193 ~I~viD~-G~k~----~I~r~L~~~G~~v~vvp~~~--------~~~~i~~--~~~DgIiLSgGPGdp~~~~~~i~~Ir~ 257 (279)
.|+++|+ |+.. .+-+.|+..|+.+.|+.... ..+++.+ ..+-++++++ .||.. ..+.+.+
T Consensus 22 ~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~~~~~~l~~~l~G~~al~fs~--~d~~~---~~k~l~~ 96 (172)
T PRK00099 22 SAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRALEGTGFEGLDDLLKGPTAIAFSY--EDPVA---AAKVLKD 96 (172)
T ss_pred EEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCCchhhhhhCcCCeEEEEeC--CChHH---HHHHHHH
Confidence 6889998 6643 45566777789998887642 2223321 3677888875 35543 3344444
Q ss_pred HH---CCCCEeeecHHHHHH
Q 039151 258 LL---GKVPVFGICMGHQLL 274 (279)
Q Consensus 258 ~~---~~~PILGICLGhQLL 274 (279)
+. ....+.|-|+.-+++
T Consensus 97 f~K~~~~~~l~gg~~eg~~l 116 (172)
T PRK00099 97 FAKDNKKLEIKGGAIEGKVL 116 (172)
T ss_pred HHhhCcCceEEEEEECCEEc
Confidence 44 355666766643443
No 335
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.05 E-value=2.6e+02 Score=21.65 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=41.9
Q ss_pred cEEEEE-EcCch-----HHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHC--CC
Q 039151 192 YRVIAY-DFGIK-----HNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLG--KV 262 (279)
Q Consensus 192 ~~I~vi-D~G~k-----~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~--~~ 262 (279)
.+|+++ ..|+. ..+-+.+.++|.++++...... .++.. .++|.|+++ |. .....+.+++... ++
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~-~~~Dvill~-----pq-i~~~~~~i~~~~~~~~i 76 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKL-DDADVVLLA-----PQ-VAYMLPDLKKETDKKGI 76 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhc-CCCCEEEEC-----ch-HHHHHHHHHHHhhhcCC
Confidence 355544 33553 3455778889999887765432 22222 478988873 33 3456777887773 67
Q ss_pred CEeee
Q 039151 263 PVFGI 267 (279)
Q Consensus 263 PILGI 267 (279)
|+.=|
T Consensus 77 pv~~I 81 (95)
T TIGR00853 77 PVEVI 81 (95)
T ss_pred CEEEe
Confidence 88654
No 336
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.89 E-value=3.4e+02 Score=23.48 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCCeEEEEcCC--CChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPST--WPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~--~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+++.|+.+.++..+ .+.+ .+...++||+|+.+. ++.. ..+.++.+. .++|+.-+
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~--~~~~---~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 19 AGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT--DAKA---LVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred HHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC--Chhh---hHHHHHHHHHCCCCEEEe
Confidence 44567788899999887532 2222 123458999999643 2221 123344444 46777654
No 337
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.88 E-value=2.1e+02 Score=26.58 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=34.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCC-hh----hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecHHH
Q 039151 203 HNILRRLASYGCQIIVVPSTWP-AS----ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGH 271 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~-~~----~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICLGh 271 (279)
..+.++| +.|+++.+-..... .. +....++|.+|.-||=|. .+...+.+ ..|++||=+|+
T Consensus 19 ~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT------~L~a~~~~--~~PilGIN~G~ 83 (271)
T PRK01185 19 KSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIITIGGDGT------ILRTLQRA--KGPILGINMGG 83 (271)
T ss_pred HHHHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEEEcCcHH------HHHHHHHc--CCCEEEEECCC
Confidence 3466667 56888766432110 00 111236899999888764 23333332 45999998884
No 338
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=27.86 E-value=2.8e+02 Score=23.83 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=23.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCh------hhhh-ccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPA------SETL-KLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~------~~i~-~~~~DgIiLSg 240 (279)
..+.+.+.+.|+.+.+...+... .++. ..++||+|+.+
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~ 67 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISR 67 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEec
Confidence 45667777888888877644221 1222 34689988864
No 339
>PRK11914 diacylglycerol kinase; Reviewed
Probab=27.80 E-value=1.1e+02 Score=28.17 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=29.2
Q ss_pred HHHHHHHHCCCeEEEEcCCC--Chhhh----hccCCCeEEEcCCCCCCC
Q 039151 204 NILRRLASYGCQIIVVPSTW--PASET----LKLKPDGVLFSNGPGDPS 246 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~--~~~~i----~~~~~DgIiLSgGPGdp~ 246 (279)
.+.+.|++.|+++.++.... ++.++ .+.++|.||+.||=|..+
T Consensus 30 ~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~ 78 (306)
T PRK11914 30 RAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVIS 78 (306)
T ss_pred HHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHH
Confidence 47778889999988765432 22222 235689999999987544
No 340
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=27.76 E-value=2.5e+02 Score=26.06 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=40.3
Q ss_pred EEEcCc----hHHHHHHHHHCCCeEEEEcC----------CCChhhhh-----ccCCCeEEEcC-CCCCCCCChHHHHHH
Q 039151 196 AYDFGI----KHNILRRLASYGCQIIVVPS----------TWPASETL-----KLKPDGVLFSN-GPGDPSAVPYAVAIV 255 (279)
Q Consensus 196 viD~G~----k~~I~r~L~~~G~~v~vvp~----------~~~~~~i~-----~~~~DgIiLSg-GPGdp~~~~~~i~~I 255 (279)
+=|.|+ -..++|+-++.|.++.++-. +.+.++.. ...+|||++|| |-|.+.+ ...++.+
T Consensus 116 ~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d-~~~l~~v 194 (257)
T TIGR00259 116 ASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTGTEVD-LELLKLA 194 (257)
T ss_pred ecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCC-HHHHHHH
Confidence 446765 45677777777877766521 11333322 12489999986 3455554 3445566
Q ss_pred HHHHCCCCEe
Q 039151 256 KELLGKVPVF 265 (279)
Q Consensus 256 r~~~~~~PIL 265 (279)
|+.....|+|
T Consensus 195 r~~~~~~Pvl 204 (257)
T TIGR00259 195 KETVKDTPVL 204 (257)
T ss_pred HhccCCCeEE
Confidence 6555667875
No 341
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.59 E-value=3.1e+02 Score=23.67 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=21.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEc
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFS 239 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLS 239 (279)
..+.+.+++.|+++.+...+.+.+ .+...++||||+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~ 62 (270)
T cd06296 19 RGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILV 62 (270)
T ss_pred HHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEe
Confidence 345566677788777765442221 1223467888775
No 342
>PLN02727 NAD kinase
Probab=27.59 E-value=1.2e+02 Score=33.43 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=45.6
Q ss_pred cEEEEEEcCc------hHHHHHHHHHC-CCeEEEEcCCCC------------------hhhhhccCCCeEEEcCCCCCCC
Q 039151 192 YRVIAYDFGI------KHNILRRLASY-GCQIIVVPSTWP------------------ASETLKLKPDGVLFSNGPGDPS 246 (279)
Q Consensus 192 ~~I~viD~G~------k~~I~r~L~~~-G~~v~vvp~~~~------------------~~~i~~~~~DgIiLSgGPGdp~ 246 (279)
.+|++|---- ...+.++|.++ |+++.+-+.... .+++ ..++|.+|.-||=|
T Consensus 679 rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el-~~~~DLVIvLGGDG--- 754 (986)
T PLN02727 679 KTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDL-HERVDFVACLGGDG--- 754 (986)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhc-ccCCCEEEEECCcH---
Confidence 4677775421 24477888886 888765432111 0111 12578888888865
Q ss_pred CChHHHHHHHHHH-CCCCEeeecHHH
Q 039151 247 AVPYAVAIVKELL-GKVPVFGICMGH 271 (279)
Q Consensus 247 ~~~~~i~~Ir~~~-~~~PILGICLGh 271 (279)
-.+...+.+. ..+|||||=+|+
T Consensus 755 ---TlLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 755 ---VILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred ---HHHHHHHHhcCCCCCEEEEeCCC
Confidence 3455666655 489999999886
No 343
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=27.55 E-value=3.3e+02 Score=23.37 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=24.8
Q ss_pred hHHHHHHHHHCCCeEEEEcCCC-Ch-------hhhhccCCCeEEEcC
Q 039151 202 KHNILRRLASYGCQIIVVPSTW-PA-------SETLKLKPDGVLFSN 240 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~-~~-------~~i~~~~~DgIiLSg 240 (279)
...+.+.+.+.|+.+.++..+. +. +.+...++||+++.+
T Consensus 18 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~ 64 (264)
T cd01574 18 LAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNA 64 (264)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeC
Confidence 3456677888899988875432 21 122345799999864
No 344
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=27.42 E-value=2.7e+02 Score=25.88 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=34.9
Q ss_pred HHHHHHHHHC-CCeEEEEcCCCC---hhhhhccCCCeEEEcCCCCCCCCC-h---HHHHHHHHHHC-CCCEee
Q 039151 203 HNILRRLASY-GCQIIVVPSTWP---ASETLKLKPDGVLFSNGPGDPSAV-P---YAVAIVKELLG-KVPVFG 266 (279)
Q Consensus 203 ~~I~r~L~~~-G~~v~vvp~~~~---~~~i~~~~~DgIiLSgGPGdp~~~-~---~~i~~Ir~~~~-~~PILG 266 (279)
..+++.+++. +..+.+- --.+ +..+.+...|+|+++|..|...+. . ..+..+++.+. ++|+++
T Consensus 161 ~~~i~~l~~~~~~pvivK-~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia 232 (299)
T cd02809 161 WDDLAWLRSQWKGPLILK-GILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLL 232 (299)
T ss_pred HHHHHHHHHhcCCCEEEe-ecCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEE
Confidence 4677888764 5544432 1122 233445689999998765543211 1 23444555553 689874
No 345
>PLN02256 arogenate dehydrogenase
Probab=27.30 E-value=2.1e+02 Score=26.94 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=36.0
Q ss_pred CCccEEEEEEcCc-hHHHHHHHHHCCCeEEEEcCCC--------------ChhhhhccCCCeEEEcCCC
Q 039151 189 SKTYRVIAYDFGI-KHNILRRLASYGCQIIVVPSTW--------------PASETLKLKPDGVLFSNGP 242 (279)
Q Consensus 189 ~~~~~I~viD~G~-k~~I~r~L~~~G~~v~vvp~~~--------------~~~~i~~~~~DgIiLSgGP 242 (279)
+.+++|.+|-+|. -.++.+.|.+.|.++.++..+. +.+++....+|.|||+--|
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~ 102 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI 102 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH
Confidence 4567999999986 4568888988898888774332 1122212357889886443
No 346
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=27.23 E-value=4.5e+02 Score=24.68 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=44.0
Q ss_pred ccEEEEEEcCch-HHHHHHHHHC--CCeEEEE------cCC-CChhhhh-----------ccCCCeEEEcCCCCCCCCCh
Q 039151 191 TYRVIAYDFGIK-HNILRRLASY--GCQIIVV------PST-WPASETL-----------KLKPDGVLFSNGPGDPSAVP 249 (279)
Q Consensus 191 ~~~I~viD~G~k-~~I~r~L~~~--G~~v~vv------p~~-~~~~~i~-----------~~~~DgIiLSgGPGdp~~~~ 249 (279)
.++|.++|-|+- -+++|++.++ ..++..+ ||. .+.++|. +..++.+||. -|-. ..
T Consensus 5 ~~~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIA---CNTA-Sa 80 (269)
T COG0796 5 QPPIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIA---CNTA-SA 80 (269)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEe---cchH-HH
Confidence 468999999873 4677777653 4444443 432 2333332 3468888884 2211 23
Q ss_pred HHHHHHHHHHCCCCEeeec
Q 039151 250 YAVAIVKELLGKVPVFGIC 268 (279)
Q Consensus 250 ~~i~~Ir~~~~~~PILGIC 268 (279)
..++.+|+-+ ++|++||=
T Consensus 81 ~al~~LR~~~-~iPVvGvi 98 (269)
T COG0796 81 VALEDLREKF-DIPVVGVI 98 (269)
T ss_pred HHHHHHHHhC-CCCEEEec
Confidence 4566666655 89999973
No 347
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=26.92 E-value=1.8e+02 Score=26.94 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=17.6
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecH
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICM 269 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICL 269 (279)
..|.++.++|+ ..+-+++ .++|+..++.
T Consensus 252 ~~d~~i~~~g~----------~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 252 AADLVICRAGA----------STVAELAAAGLPAILVPL 280 (357)
T ss_pred hCCEEEECCCH----------HHHHHHHHhCCCEEEecC
Confidence 56666665442 2233444 7999999985
No 348
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.88 E-value=65 Score=29.92 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=26.6
Q ss_pred cCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHH
Q 039151 231 LKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGH 271 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGh 271 (279)
.++|.+|.-||=| -.+..++.+. .++|++||=+|+
T Consensus 32 ~~~D~vi~iGGDG------T~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDG------FFVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcH------HHHHHHHHhcCCCCcEEEEecCC
Confidence 3689999888865 3456666665 589999999885
No 349
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=26.80 E-value=98 Score=28.73 Aligned_cols=31 Identities=23% Similarity=0.575 Sum_probs=22.7
Q ss_pred cCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 231 LKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
..||.||++ ||... ...|+++- -++|+.|||
T Consensus 117 ~~P~llIV~----Dp~~d---~qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 117 MEPRLLIVT----DPRTD---HQAIREASYVNIPVIALC 148 (249)
T ss_pred CCCCEEEEe----CCCcc---hHHHHHHHHhCCCEEEEe
Confidence 369999997 56543 34556666 599999999
No 350
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=26.75 E-value=3.3e+02 Score=24.72 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
..+.+.+.++|+.+.+.+.+.+.+ .+...++||||+.+
T Consensus 83 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~ 127 (331)
T PRK14987 83 RGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTE 127 (331)
T ss_pred HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 456677888899998876543321 12245899999963
No 351
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=26.52 E-value=3.8e+02 Score=23.92 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=24.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEc
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFS 239 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLS 239 (279)
..+.+.+++.|+.+.++....+.+ .+...++||+|+.
T Consensus 46 ~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~ 89 (295)
T PRK10653 46 DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLIN 89 (295)
T ss_pred HHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 446677788999998875433222 1223579999985
No 352
>PF12438 DUF3679: Protein of unknown function (DUF3679) ; InterPro: IPR020534 This entry contains proteins with no known function.
Probab=26.49 E-value=40 Score=24.24 Aligned_cols=17 Identities=53% Similarity=0.907 Sum_probs=13.1
Q ss_pred cCCcccccccCCCCCCcEEEec
Q 039151 38 SLTGYQEILTDPSYAGQFVLMT 59 (279)
Q Consensus 38 ~mtGYqE~lTDPSY~gQiv~~T 59 (279)
.|-||+ ||||. |++.+|
T Consensus 26 ~MkGy~----dp~~~-~~~~it 42 (56)
T PF12438_consen 26 SMKGYD----DPSYE-QAFHIT 42 (56)
T ss_pred hccCCC----CCCcc-ccEEec
Confidence 488997 89987 676665
No 353
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=26.38 E-value=1.6e+02 Score=25.77 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=26.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL 259 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~ 259 (279)
..+.+.|.++|..+.+++.+. ++ .+|+.||++ .-....+...+.++++.
T Consensus 33 ~~~y~al~~~gi~vDvv~~~~---dL--~~Ykllv~P---~~~~l~~~~~~~L~~yV 81 (207)
T PF08532_consen 33 RGWYRALRELGIPVDVVSPDD---DL--SGYKLLVLP---SLYILSPEFAERLRAYV 81 (207)
T ss_dssp HHHHHHHHTTT--EEEE-TTS-------TT-SEEEES-----SC--HHH---HHHHH
T ss_pred HHHHHHHHHcCCceEEecCcC---Cc--ccCcEEEEe---eEEEEChHHHHHHHHHH
Confidence 456788999999999998754 33 258888873 22233455667788877
No 354
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=26.31 E-value=1.3e+02 Score=29.80 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=35.9
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH----CCCCEeeecHHHHHHH
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL----GKVPVFGICMGHQLLG 275 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~----~~~PILGICLGhQLLa 275 (279)
..+.++.|.. |++|-++.|..+ +-+=++-|.-+ .+.-++.|.+++ .++=++|+|+|--+..
T Consensus 119 ~RS~V~~Ll~-g~dVYl~DW~~p---------~~vp~~~~~f~---ldDYi~~l~~~i~~~G~~v~l~GvCqgG~~~l 183 (406)
T TIGR01849 119 LRSTVEALLP-DHDVYITDWVNA---------RMVPLSAGKFD---LEDYIDYLIEFIRFLGPDIHVIAVCQPAVPVL 183 (406)
T ss_pred HHHHHHHHhC-CCcEEEEeCCCC---------CCCchhcCCCC---HHHHHHHHHHHHHHhCCCCcEEEEchhhHHHH
Confidence 4778888888 999999987432 11111111111 122223444433 3688999999987643
No 355
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=26.28 E-value=3.3e+02 Score=26.56 Aligned_cols=81 Identities=27% Similarity=0.398 Sum_probs=46.5
Q ss_pred EcCchHHHHHHHHHC-CCeEEEEcCCCChhh---hhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHH--CCCCEe---ee
Q 039151 198 DFGIKHNILRRLASY-GCQIIVVPSTWPASE---TLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELL--GKVPVF---GI 267 (279)
Q Consensus 198 D~G~k~~I~r~L~~~-G~~v~vvp~~~~~~~---i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~--~~~PIL---GI 267 (279)
|-.+.+..+++|++. ...+ ++---.+.++ ..+...|+|++||.-|.--+. ...++.+.++. -++|++ ||
T Consensus 220 d~~~~w~~i~~ir~~~~~pv-iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGI 298 (361)
T cd04736 220 DASFNWQDLRWLRDLWPHKL-LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGI 298 (361)
T ss_pred CCcCCHHHHHHHHHhCCCCE-EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCC
Confidence 444566778888764 3333 3322234443 345689999999876643321 22333433333 158887 78
Q ss_pred cHHHHHH-HHHcC
Q 039151 268 CMGHQLL-GQALG 279 (279)
Q Consensus 268 CLGhQLL-a~AlG 279 (279)
..|.-++ |+|+|
T Consensus 299 r~g~Dv~KALaLG 311 (361)
T cd04736 299 RRGSDIVKALALG 311 (361)
T ss_pred CCHHHHHHHHHcC
Confidence 8887776 55665
No 356
>PF07073 ROF: Modulator of Rho-dependent transcription termination (ROF); InterPro: IPR009778 This family consists of several bacterial modulator of Rho-dependent transcription termination (ROF) proteins. ROF binds transcription termination factor Rho and inhibits Rho-dependent termination in vivo [].; PDB: 1SG5_A.
Probab=26.14 E-value=44 Score=25.58 Aligned_cols=54 Identities=31% Similarity=0.481 Sum_probs=31.9
Q ss_pred eeEEEecCCCEEEEEeeCCCcc--eeeeEEEeecCCcccccccCCCCCCcEEEec----cCccccc
Q 039151 7 NARLVLEDGSIWRAKSFGASGT--QVGEVVFNTSLTGYQEILTDPSYAGQFVLMT----NPHIGNT 66 (279)
Q Consensus 7 ~a~L~LedG~~f~G~~fG~~~~--~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~T----yP~IGNy 66 (279)
+-.|.|.||+.++|++.--... -.==++..++ .|=|++-.| ||..|+ .|++|..
T Consensus 19 ~v~L~l~dG~~~~g~A~dt~~~~~k~E~L~l~~~-~~~~~i~Ld-----~I~~~~al~~nPhF~~v 78 (80)
T PF07073_consen 19 PVKLTLKDGEQIEGKALDTRTNAKKEECLVLEQD-GGEQEIRLD-----QIASMSALTDNPHFGTV 78 (80)
T ss_dssp -EEEE-TTT--EEESS-EEE---SSS-EEEEEET-TEEEEESTT-------SEEE----ETTTEEE
T ss_pred eEEEEEeCCCEEEEEEEEEEEecCceEEEEEecC-CcEEEEEhh-----heeeeeecCCCCeeeEE
Confidence 4579999999999998642211 1122556665 677788776 899999 9998853
No 357
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=26.13 E-value=2.7e+02 Score=28.21 Aligned_cols=88 Identities=24% Similarity=0.326 Sum_probs=43.5
Q ss_pred cEEEEEEc--Cch---HHHHHHHHHCCCeEEEEcCC-CChh---hhhccCCCeEEEcCCCCCCCCC--------h--HHH
Q 039151 192 YRVIAYDF--GIK---HNILRRLASYGCQIIVVPST-WPAS---ETLKLKPDGVLFSNGPGDPSAV--------P--YAV 252 (279)
Q Consensus 192 ~~I~viD~--G~k---~~I~r~L~~~G~~v~vvp~~-~~~~---~i~~~~~DgIiLSgGPGdp~~~--------~--~~i 252 (279)
..+++||. |-. ...++++++.--.+.++--+ .+.+ .+.+...|+|.++.|||+-... + ..+
T Consensus 254 ~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai 333 (495)
T PTZ00314 254 VDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAV 333 (495)
T ss_pred CCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHH
Confidence 45666665 321 23455555541123332212 2222 3344678999998888852110 1 233
Q ss_pred HHHHHHH--CCCCEe---eecHHHHHH-HHHcC
Q 039151 253 AIVKELL--GKVPVF---GICMGHQLL-GQALG 279 (279)
Q Consensus 253 ~~Ir~~~--~~~PIL---GICLGhQLL-a~AlG 279 (279)
..+.++. .++|++ ||-.+..+. |.|+|
T Consensus 334 ~~~~~~~~~~~v~vIadGGi~~~~di~kAla~G 366 (495)
T PTZ00314 334 YHVARYARERGVPCIADGGIKNSGDICKALALG 366 (495)
T ss_pred HHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcC
Confidence 3344444 368877 465555544 44554
No 358
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=26.12 E-value=13 Score=30.73 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=13.0
Q ss_pred ccCcccccCCCCCcc
Q 039151 59 TNPHIGNTGVNFDDE 73 (279)
Q Consensus 59 TyP~IGNyGi~~~~~ 73 (279)
||-|.||||||..|.
T Consensus 83 Ty~LFssy~In~~dL 97 (122)
T PF10757_consen 83 TYMLFSSYGINDSDL 97 (122)
T ss_pred HHHHhcCccCCHHHH
Confidence 788999999998764
No 359
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=25.96 E-value=1.7e+02 Score=27.15 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=39.5
Q ss_pred hHHHHHHHHHCCCeEEEEcCCC-------ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHH
Q 039151 202 KHNILRRLASYGCQIIVVPSTW-------PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGH 271 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~-------~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGh 271 (279)
...+..++...+..+.+.+... ...+.....+|.+++-||-| -.+...+.+. .++|++||=+||
T Consensus 18 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGDG------tlL~~~~~~~~~~~pilgin~G~ 89 (281)
T COG0061 18 AKRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGDG------TLLRAARLLARLDIPVLGINLGH 89 (281)
T ss_pred HHHHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCcH------HHHHHHHHhccCCCCEEEEeCCC
Confidence 3556677777888777664310 11111124578787776654 3455566666 478999999995
No 360
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.86 E-value=1.4e+02 Score=27.75 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=34.7
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeecH-HH
Q 039151 205 ILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGICM-GH 271 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGICL-Gh 271 (279)
+.++|+++|+++.+- . .++|.+|.-||=| -.+...+.+. .++|++||=+ |+
T Consensus 22 l~~~l~~~g~~~~~~--------~--~~~D~vi~lGGDG------T~L~a~~~~~~~~~~pilgIn~~G~ 75 (264)
T PRK03501 22 LKKIAEEYGFTVVDH--------P--KNANIIVSIGGDG------TFLQAVRKTGFREDCLYAGISTKDQ 75 (264)
T ss_pred HHHHHHHCCCEEEcC--------C--CCccEEEEECCcH------HHHHHHHHhcccCCCeEEeEecCCC
Confidence 556788889877532 1 2578888888865 2455566554 3789999988 63
No 361
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=25.76 E-value=1.1e+02 Score=28.47 Aligned_cols=30 Identities=33% Similarity=0.476 Sum_probs=22.4
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
.||.||+. ||.. ....|+++. -++|+.|||
T Consensus 157 ~Pd~iii~----d~~~---~~~ai~Ea~kl~IPiIaiv 187 (258)
T PRK05299 157 LPDALFVV----DPNK---EHIAVKEARKLGIPVVAIV 187 (258)
T ss_pred CCCEEEEe----CCCc---cHHHHHHHHHhCCCEEEEe
Confidence 69999996 5553 335567776 599999998
No 362
>CHL00067 rps2 ribosomal protein S2
Probab=25.74 E-value=1e+02 Score=27.99 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=23.1
Q ss_pred cCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 231 LKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
..||.||+. ||.. ....++++. -++|+.|||
T Consensus 160 ~~P~~iiv~----d~~~---~~~ai~Ea~~l~IPvIaiv 191 (230)
T CHL00067 160 KLPDIVIII----DQQE---EYTALRECRKLGIPTISIL 191 (230)
T ss_pred cCCCEEEEe----CCcc---cHHHHHHHHHcCCCEEEEE
Confidence 359999996 5554 335667777 599999998
No 363
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=25.70 E-value=41 Score=26.00 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=24.6
Q ss_pred eeEEEecCCCEEEEEeeCCC-cceeeeEEEeecCCcccccccCCCCCCc
Q 039151 7 NARLVLEDGSIWRAKSFGAS-GTQVGEVVFNTSLTGYQEILTDPSYAGQ 54 (279)
Q Consensus 7 ~a~L~LedG~~f~G~~fG~~-~~~~GEvVFnT~mtGYqE~lTDPSY~gQ 54 (279)
..+++.+||++- |.....+ .-..+.-.++.++.+ .+.|||.|.||
T Consensus 42 ~~~~~~~~~~iv-g~~~~~~~~~~~~g~~~~~~~i~--~v~v~p~~R~~ 87 (127)
T PF13527_consen 42 RCVVAEDDGKIV-GHVGLIPRRLSVGGKKFKAAYIG--DVAVDPEYRGR 87 (127)
T ss_dssp EEEEEEETTEEE-EEEEEEEEEEEETTEEEEEEEEE--EEEE-GGGTTS
T ss_pred cEEEEEECCEEE-EEEEEEEEEEEECCEEEEEEEEE--EEEECHHHcCC
Confidence 345556655543 3332222 223344566666666 57899999886
No 364
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=25.68 E-value=2.2e+02 Score=25.88 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=22.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh------hhhccCCCeEEEc
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS------ETLKLKPDGVLFS 239 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~------~i~~~~~DgIiLS 239 (279)
..|.+.+++.|+.+.++..+.+.+ .+.+.+.||+|+.
T Consensus 21 ~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~ 63 (279)
T PF00532_consen 21 RGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILA 63 (279)
T ss_dssp HHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEe
Confidence 446666777788777765443322 1334578888886
No 365
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=25.47 E-value=2.5e+02 Score=24.37 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=21.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
..+.+.++++|+.+.++..+.+.+ .+...++||||+.+
T Consensus 19 ~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~ 63 (268)
T cd06270 19 SGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHS 63 (268)
T ss_pred HHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEec
Confidence 334555666777777665432211 12235778888763
No 366
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.23 E-value=1.1e+02 Score=26.98 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=35.3
Q ss_pred cCCCeEEEcCCCCCCCC----------C---hHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151 231 LKPDGVLFSNGPGDPSA----------V---PYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~~----------~---~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG 279 (279)
..+|++++.||-|.... + ++...+.+.+. .++|+==||.---|+...+|
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g 146 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFG 146 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcC
Confidence 36899999999985432 1 23444555554 69999889998888887665
No 367
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.16 E-value=4.9e+02 Score=25.15 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=35.1
Q ss_pred cEEEEEEcCch-HHHHHHHHHCCCeEEEEcCCCC-hh--h-h----------hccCCCeEEEcCCCC
Q 039151 192 YRVIAYDFGIK-HNILRRLASYGCQIIVVPSTWP-AS--E-T----------LKLKPDGVLFSNGPG 243 (279)
Q Consensus 192 ~~I~viD~G~k-~~I~r~L~~~G~~v~vvp~~~~-~~--~-i----------~~~~~DgIiLSgGPG 243 (279)
.+|+++.+|.. .++.+.|.++|++|.....+.. .. . + ...++|.+|.|+|..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 37999999863 4689999999998887753321 00 0 0 012578899988764
No 368
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=25.14 E-value=69 Score=29.87 Aligned_cols=85 Identities=21% Similarity=0.376 Sum_probs=49.5
Q ss_pred ccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEEEeccCCCCCccccCCCHHHHHH----HcCceEEe-c-Cc
Q 039151 44 EILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLA----ERNIMGIY-D-VD 117 (279)
Q Consensus 44 E~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~L~----~~~ipgi~-g-vD 117 (279)
|.|.+-.=.||=+++..+|+||+-+-.--+... ..+ .+|.|..- ..-++++++ +.|+.-|. . =.
T Consensus 103 e~l~~~~~~gkgvI~lt~H~GnwE~~~~~~~~~-~~~-~~vyr~~~--------n~~~d~~~~~~R~~~g~~~i~~~~~~ 172 (305)
T PRK08734 103 ELYDAALASGRGVIVAAPHFGNWELLNQWLSER-GPI-AIVYRPPE--------SEAVDGFLQLVRGGDNVRQVRAEGPA 172 (305)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHHHHHHcc-CCc-eEEEeCCC--------CHHHHHHHHHHhccCCCeeecCCchh
Confidence 344443335888889999999996543222222 222 34666543 223556555 34555552 2 13
Q ss_pred hHHHHHHhhhcCceeEEEecCC
Q 039151 118 TRAITRRLRQDGSLIGVLSTEE 139 (279)
Q Consensus 118 TRaLt~~iR~~G~m~g~i~~~~ 139 (279)
+|+|.+.||+.+ ..|++.++.
T Consensus 173 ~r~li~~Lk~g~-~v~~l~Dq~ 193 (305)
T PRK08734 173 VRQLFKVLKDGG-AVGILPDQQ 193 (305)
T ss_pred HHHHHHHHhcCC-eEEEeCCCC
Confidence 799999999655 667776543
No 369
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=25.12 E-value=1.3e+02 Score=27.25 Aligned_cols=72 Identities=22% Similarity=0.275 Sum_probs=39.5
Q ss_pred EEEEEEcCch-HHHHHHHHHCCCeEEEEcCCCChhhhhccCCC-eEEEcCCCCCCCC----ChHHHHHHHHHHCCCCEee
Q 039151 193 RVIAYDFGIK-HNILRRLASYGCQIIVVPSTWPASETLKLKPD-GVLFSNGPGDPSA----VPYAVAIVKELLGKVPVFG 266 (279)
Q Consensus 193 ~I~viD~G~k-~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~D-gIiLSgGPGdp~~----~~~~i~~Ir~~~~~~PILG 266 (279)
.++++|.|.. ..+.+.|... +++|+-++......+...++ -+++.||--++.. .+...+.++.+--++=++|
T Consensus 95 d~Ifld~GtT~~~l~~~L~~~--~ltVvTNs~~ia~~l~~~~~~~vil~GG~~~~~~~~~~G~~a~~~l~~~~~d~afis 172 (240)
T PRK10411 95 MVIALDASSTCWYLARQLPDI--NIQVFTNSHPICQELGKRERIQLISSGGTLERKYGCYVNPSLISQLKSLEIDLFIFS 172 (240)
T ss_pred CEEEEcCcHHHHHHHHhhCCC--CeEEEeCCHHHHHHHhcCCCCEEEEECCEEeCCCCceECHHHHHHHHhcCCCEEEEe
Confidence 5888999874 4566777544 57777665443322222232 3666777544432 1345566666543444443
No 370
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.94 E-value=3.8e+02 Score=23.36 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=37.1
Q ss_pred hHHHHHHHHHCCCeEEEEcCCC-Chh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 202 KHNILRRLASYGCQIIVVPSTW-PAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~-~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
...+.+.+.+.|+.+.+...+. +.+ .+...++||+|+.+. ++. ...+.++.+. .++|+.-+.
T Consensus 19 ~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~--~~~---~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 19 KNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIP--DPD---ALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred HHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCC--ChH---HhHHHHHHHHHCCCeEEEeC
Confidence 4556677888999998886543 322 122458999999742 222 1223344444 477877663
No 371
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.86 E-value=4.1e+02 Score=22.76 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=22.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
..+.+.+++.|+.+.++....+.+ .+.+.++||+|+.+
T Consensus 19 ~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~ 63 (268)
T cd06289 19 AGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCP 63 (268)
T ss_pred HHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 344566777888877665433222 12235788888864
No 372
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=24.67 E-value=3.4e+02 Score=26.83 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=23.9
Q ss_pred cEEEEEEcCc-hHHHHHHHHHCCCeEEEEcC
Q 039151 192 YRVIAYDFGI-KHNILRRLASYGCQIIVVPS 221 (279)
Q Consensus 192 ~~I~viD~G~-k~~I~r~L~~~G~~v~vvp~ 221 (279)
++|+++--|. .+.+...|++.|+++.++|.
T Consensus 3 ~kVLvlG~G~re~al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 3 MKVMLVGSGGREDAIARAIKRSGAILFSVIG 33 (435)
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCeEEEEEC
Confidence 6899998887 67888889988887766654
No 373
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=24.57 E-value=4.6e+02 Score=23.92 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=24.7
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-hhhc-cCCCeEEEc
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-ETLK-LKPDGVLFS 239 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-~i~~-~~~DgIiLS 239 (279)
..+.++|.+.|+++..+..+.... .+.+ .++|.+|..
T Consensus 22 ~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~ 60 (299)
T PRK14571 22 ERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNV 60 (299)
T ss_pred HHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEe
Confidence 568899999999999886543222 2211 368977764
No 374
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=24.19 E-value=3.6e+02 Score=21.71 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=28.8
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEE--cCCCCCCCCC-hHHHHHHHHH
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF--SNGPGDPSAV-PYAVAIVKEL 258 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiL--SgGPGdp~~~-~~~i~~Ir~~ 258 (279)
...+++.|+++|.++-.+....+ +|-+++ +||+..|... ....++++++
T Consensus 16 ~~~l~~~l~~~~~~v~~~kp~~~--------~d~vliEGaGg~~~p~~~~~~~~d~~~~~ 67 (134)
T cd03109 16 TAILARALKEKGYRVAPLKPVQT--------YDFVLVEGAGGLCVPLKEDFTNADVAKEL 67 (134)
T ss_pred HHHHHHHHHHCCCeEEEEecCCC--------CCEEEEECCCccccCCCCCCCHHHHHHHh
Confidence 35578899999998888754322 577777 3344444332 1234455543
No 375
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=24.08 E-value=30 Score=28.94 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=14.8
Q ss_pred CCCCccccCCCHHHHHHHcCceEEec
Q 039151 90 IGTSNWRCAETLGNYLAERNIMGIYD 115 (279)
Q Consensus 90 ~~~s~~~~~~sl~~~L~~~~ipgi~g 115 (279)
.-|+|||+.+||..-+ +|..+..
T Consensus 27 ~LP~HWR~NKsLP~~F---kVvalg~ 49 (135)
T PF00853_consen 27 VLPSHWRSNKSLPVAF---KVVALGD 49 (135)
T ss_dssp S-TSEEETTSS-SS-E---EEEESSS
T ss_pred cccccccccCCCCCce---eEEEEEE
Confidence 3589999999998744 4655543
No 376
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=24.08 E-value=4e+02 Score=29.56 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=23.7
Q ss_pred CccEEEEEEcCch------------HHHHHHHHHCCCeEEEEcC
Q 039151 190 KTYRVIAYDFGIK------------HNILRRLASYGCQIIVVPS 221 (279)
Q Consensus 190 ~~~~I~viD~G~k------------~~I~r~L~~~G~~v~vvp~ 221 (279)
...+|+++.-|.. -..++.|+++|+++.++.+
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~ 596 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNC 596 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeC
Confidence 3468999986642 2357899999999998854
No 377
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=24.01 E-value=1.8e+02 Score=25.77 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=31.4
Q ss_pred HHHHHHHHCCCe---E--EEEcCCCC--hhhhh---c-cCCCeEEEcCCCC-CCCCChHHHHHHHHHH-CCCCE
Q 039151 204 NILRRLASYGCQ---I--IVVPSTWP--ASETL---K-LKPDGVLFSNGPG-DPSAVPYAVAIVKELL-GKVPV 264 (279)
Q Consensus 204 ~I~r~L~~~G~~---v--~vvp~~~~--~~~i~---~-~~~DgIiLSgGPG-dp~~~~~~i~~Ir~~~-~~~PI 264 (279)
.+...|++.|++ + .++|.+.. .+.+. + .++|.||.+||-| +|.| ...+.++.++ +.+|=
T Consensus 27 ~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rD--vTpeAv~~l~~keipG 98 (193)
T PRK09417 27 ALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARRD--VTPEATLAVADKEMPG 98 (193)
T ss_pred HHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCC--cHHHHHHHHhCCcCCc
Confidence 355667777643 2 34454321 11122 1 2699999999876 3443 3445555555 34453
No 378
>PF08815 Nuc_rec_co-act: Nuclear receptor coactivator; InterPro: IPR014920 This entry represents the interlocking domain of the eukaryotic nuclear receptor coactivators Ncoa1, Ncoa2 and Ncoa3. The interlocking domain forms a 3-helical non-globular array that forms interlocked heterodimers with its target. Nuclear receptors are ligand-activated transcription factors involved in the regulation of many processes, including development, reproduction and homeostasis. Nuclear receptor coactivators act to modulate the function of nuclear receptors. Coactivators associate with promoters and enhancers primarily through protein-protein contacts to facilitate the interaction between DNA-bound transcription factors and the transcription machinery. In addition to their role as coactivators of various nuclear receptors, Ncoa1 and Ncoa3 both have histone acetyltransferase activity (2.3.1.48 from EC), but Ncoa2 does not [, ]. ; GO: 0003713 transcription coactivator activity, 0035257 nuclear hormone receptor binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2C52_B 1KBH_A.
Probab=24.00 E-value=18 Score=25.40 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=13.1
Q ss_pred HHHHHHHcCceEEecCchHHH
Q 039151 101 LGNYLAERNIMGIYDVDTRAI 121 (279)
Q Consensus 101 l~~~L~~~~ipgi~gvDTRaL 121 (279)
|..+|+...+.|+..|| |||
T Consensus 13 L~s~L~~~D~~~LeEID-raL 32 (51)
T PF08815_consen 13 LYSLLSNTDVTGLEEID-RAL 32 (51)
T ss_dssp HHHHCCTSSGCCCHCCH-HHT
T ss_pred HHHHHhccchhhHHHHH-HHh
Confidence 45566667777777777 554
No 379
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=23.74 E-value=1.3e+02 Score=26.01 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=23.6
Q ss_pred ccEEEEEEcCc-hHHHHHHHHHCCCeEEEEcCC
Q 039151 191 TYRVIAYDFGI-KHNILRRLASYGCQIIVVPST 222 (279)
Q Consensus 191 ~~~I~viD~G~-k~~I~r~L~~~G~~v~vvp~~ 222 (279)
+++++|+-||- -..+.+.|+..|++|+|+..+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~D 55 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEID 55 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SS
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECC
Confidence 46899999996 567999999999999998654
No 380
>PRK06852 aldolase; Validated
Probab=23.65 E-value=1.2e+02 Score=28.96 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=41.5
Q ss_pred HHHHHHCCCeEEEEcCC-----CC---hhhhhccC-CCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecHHHH
Q 039151 206 LRRLASYGCQIIVVPST-----WP---ASETLKLK-PDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMGHQ 272 (279)
Q Consensus 206 ~r~L~~~G~~v~vvp~~-----~~---~~~i~~~~-~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICLGhQ 272 (279)
.|.-.++|+++.=+++. .+ +.++.+.. +--||++|||-. .....++.++.++..-=-.|||.|=-
T Consensus 194 aRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~--~~~e~L~~v~~ai~~aGa~Gv~~GRN 267 (304)
T PRK06852 194 AGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSST--DPEEFLKQLYEQIHISGASGNATGRN 267 (304)
T ss_pred HHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCC--CHHHHHHHHHHHHHHcCCceeeechh
Confidence 35566789998877764 22 33333333 567999999965 23457778887764223468887743
No 381
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=23.51 E-value=4.2e+02 Score=23.93 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=23.9
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
..+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+
T Consensus 79 ~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~ 123 (329)
T TIGR01481 79 RGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMG 123 (329)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 345566777899888775443221 12345789999864
No 382
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=23.49 E-value=92 Score=29.10 Aligned_cols=45 Identities=36% Similarity=0.661 Sum_probs=29.9
Q ss_pred CCCeEEEcCCCCC--CCCChHHHHHHHHHHCCCCEeee--cHHHHHHHH
Q 039151 232 KPDGVLFSNGPGD--PSAVPYAVAIVKELLGKVPVFGI--CMGHQLLGQ 276 (279)
Q Consensus 232 ~~DgIiLSgGPGd--p~~~~~~i~~Ir~~~~~~PILGI--CLGhQLLa~ 276 (279)
+.|.|-.+-|||- |-..-......-.++-++|+.|+ |.||--|++
T Consensus 70 diD~icyTKGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigHIEMGR 118 (336)
T KOG2708|consen 70 DIDCICYTKGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGHIEMGR 118 (336)
T ss_pred hCCEEEEcCCCCCCCchhhHHHHHHHHHHHhCCCcccchhhhhhhhhcc
Confidence 5689999999984 43322222223334479999998 999977654
No 383
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=23.46 E-value=1.2e+02 Score=27.38 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=22.3
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
.||.||+. ||.. ....++++. -++|+.|||
T Consensus 155 ~Pd~vii~----d~~~---~~~ai~Ea~~l~IP~I~iv 185 (225)
T TIGR01011 155 LPDLLFVI----DPVK---EKIAVAEARKLGIPVVAIV 185 (225)
T ss_pred CCCEEEEe----CCCc---cHHHHHHHHHcCCCEEEEe
Confidence 69999996 4543 345567776 599999998
No 384
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=23.43 E-value=1.1e+02 Score=28.67 Aligned_cols=64 Identities=14% Similarity=0.258 Sum_probs=37.4
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC-----ChHHHHHHHHHH--CCCCEeeecHHHHHH
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA-----VPYAVAIVKELL--GKVPVFGICMGHQLL 274 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~-----~~~~i~~Ir~~~--~~~PILGICLGhQLL 274 (279)
..++++.|.+.|++|.++.+.-.-. +.++.+..+ ....++.+++.. .++=++|-|+|-.+.
T Consensus 83 ~~~~~~~L~~~G~~V~~~D~~g~g~------------s~~~~~~~d~~~~~~~~~v~~l~~~~~~~~i~lvGhS~GG~i~ 150 (350)
T TIGR01836 83 DRSLVRGLLERGQDVYLIDWGYPDR------------ADRYLTLDDYINGYIDKCVDYICRTSKLDQISLLGICQGGTFS 150 (350)
T ss_pred CchHHHHHHHCCCeEEEEeCCCCCH------------HHhcCCHHHHHHHHHHHHHHHHHHHhCCCcccEEEECHHHHHH
Confidence 4678999999999998886421100 001111111 122344444444 367799999999887
Q ss_pred HHH
Q 039151 275 GQA 277 (279)
Q Consensus 275 a~A 277 (279)
..+
T Consensus 151 ~~~ 153 (350)
T TIGR01836 151 LCY 153 (350)
T ss_pred HHH
Confidence 653
No 385
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.41 E-value=4.1e+02 Score=22.85 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=22.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh---hh----hccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS---ET----LKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~---~i----~~~~~DgIiLSg 240 (279)
..+.+.+++.|+.+.+...+.+.+ .+ ...++||||+.+
T Consensus 24 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~ 68 (270)
T cd06294 24 RGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLY 68 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEec
Confidence 345566777888887765432211 11 123589988864
No 386
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=23.39 E-value=3.3e+02 Score=23.82 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=25.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSg 240 (279)
..+.+.+++.|+.+.+...+..... ...+.||+|+.+
T Consensus 24 ~gi~~~~~~~g~~~~~~~~~~~~~~-~~~~vdgii~~~ 60 (270)
T cd01544 24 LGIEKRAQELGIELTKFFRDDDLLE-ILEDVDGIIAIG 60 (270)
T ss_pred HHHHHHHHHcCCEEEEEeccchhHH-hccCcCEEEEec
Confidence 4566778889999988765432222 345799999863
No 387
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=23.29 E-value=3.8e+02 Score=25.42 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=32.8
Q ss_pred ccEEEEEEc--Cch---HHHHHHHHHCCCeEEEE-cCCCCh---hhhhccCCCeEEEcCCCCC
Q 039151 191 TYRVIAYDF--GIK---HNILRRLASYGCQIIVV-PSTWPA---SETLKLKPDGVLFSNGPGD 244 (279)
Q Consensus 191 ~~~I~viD~--G~k---~~I~r~L~~~G~~v~vv-p~~~~~---~~i~~~~~DgIiLSgGPGd 244 (279)
+.+++++|+ |.. ..+++.+++.+-++.++ ..-.+. ..+.+...|+|++..|||.
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~ 168 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGS 168 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCc
Confidence 467888887 433 34567777765223333 222333 3344568999999888875
No 388
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=23.23 E-value=48 Score=30.66 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=24.8
Q ss_pred ccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHH
Q 039151 230 KLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGH 271 (279)
Q Consensus 230 ~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGh 271 (279)
..++|.+|.-||=| -.+...+.+. .++|++||=.|+
T Consensus 74 ~~~~D~ii~lGGDG------T~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 74 EEGVDLIIVLGGDG------TFLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCCSSEEEEEESHH------HHHHHHHHCTTST-EEEEEESSS
T ss_pred ccCCCEEEEECCCH------HHHHHHHHhccCCCcEEeecCCC
Confidence 46899999988854 2344555554 389999998774
No 389
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=23.23 E-value=3.1e+02 Score=23.73 Aligned_cols=55 Identities=27% Similarity=0.434 Sum_probs=36.7
Q ss_pred cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC--------Chhhhhc--cCCCeEEEcCCCCCCCCC
Q 039151 192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW--------PASETLK--LKPDGVLFSNGPGDPSAV 248 (279)
Q Consensus 192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~--------~~~~i~~--~~~DgIiLSgGPGdp~~~ 248 (279)
..++++|+ |+. +.+-+.|+..|+.+.|+.+.. ..+.+.+ ..|-++++|++ ||...
T Consensus 23 ~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~lkV~KNtL~~rAl~~~~~e~l~~~l~Gp~ai~fs~~--dp~~~ 92 (175)
T COG0244 23 PSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALEEAGLEGLDDLLKGPTAIAFSNE--DPVAA 92 (175)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhCCcEEEEEhhHHHHHHHHhcchhhHHHhccCCeEEEEecC--CHHHH
Confidence 36899999 774 456667777899999997642 1122211 36889999865 66543
No 390
>PLN02187 rooty/superroot1
Probab=22.97 E-value=83 Score=31.14 Aligned_cols=84 Identities=10% Similarity=0.129 Sum_probs=47.1
Q ss_pred eeEEEeecCC-------------cccccccCCCCCC--------cEEEeccCcc--cccCCCCCccccc-cceeeEEEEe
Q 039151 31 GEVVFNTSLT-------------GYQEILTDPSYAG--------QFVLMTNPHI--GNTGVNFDDEESR-QCFLAGLVIR 86 (279)
Q Consensus 31 GEvVFnT~mt-------------GYqE~lTDPSY~g--------Qiv~~TyP~I--GNyGi~~~~~Es~-~~~~~g~iv~ 86 (279)
.+|+++.|-+ |=.=++.+|+|.+ .+-+-.+|+. .+|+++.+++|+. +...+.+++.
T Consensus 132 ~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~ 211 (462)
T PLN02187 132 EDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVI 211 (462)
T ss_pred ccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEe
Confidence 4678877754 2122455788774 1223345553 5688888887653 2345667777
Q ss_pred ccCCCCCc-ccc---CCCHHHHHHHcCceEEec
Q 039151 87 SLSIGTSN-WRC---AETLGNYLAERNIMGIYD 115 (279)
Q Consensus 87 e~~~~~s~-~~~---~~sl~~~L~~~~ipgi~g 115 (279)
+.. .|.- .-+ .+.|.++.++++++-|++
T Consensus 212 nP~-NPTG~v~s~e~l~~i~~~a~~~~i~iI~D 243 (462)
T PLN02187 212 NPN-NPCGNVYSHDHLKKVAETARKLGIMVISD 243 (462)
T ss_pred CCC-CCCCCccCHHHHHHHHHHHHHCCCEEEEe
Confidence 643 3332 112 234556777888766643
No 391
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=22.71 E-value=3.3e+02 Score=26.16 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=44.4
Q ss_pred ccEEEEEEcCc-hHHHHHHHHHCCCeEEEEcCC-C-C-------------hhhhhccCCCeEEEcCCCCCCCCChHHH-H
Q 039151 191 TYRVIAYDFGI-KHNILRRLASYGCQIIVVPST-W-P-------------ASETLKLKPDGVLFSNGPGDPSAVPYAV-A 253 (279)
Q Consensus 191 ~~~I~viD~G~-k~~I~r~L~~~G~~v~vvp~~-~-~-------------~~~i~~~~~DgIiLSgGPGdp~~~~~~i-~ 253 (279)
+.+|.+|-+|. -+.+.+.|+..|+++.+.... . + .++.. .+.|-|+++ =| +....... +
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa-~~ADVVvLa-VP--d~~~~~V~~~ 92 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAA-KWADVIMIL-LP--DEVQAEVYEE 92 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHH-hcCCEEEEc-CC--HHHHHHHHHH
Confidence 46899999986 467888999999988765221 1 1 11111 256777774 22 11112222 2
Q ss_pred HHHHHHCCCCEeeecHHH
Q 039151 254 IVKELLGKVPVFGICMGH 271 (279)
Q Consensus 254 ~Ir~~~~~~PILGICLGh 271 (279)
.+...+..-.++.+|.|.
T Consensus 93 ~I~~~Lk~g~iL~~a~G~ 110 (330)
T PRK05479 93 EIEPNLKEGAALAFAHGF 110 (330)
T ss_pred HHHhcCCCCCEEEECCCC
Confidence 333334445688999884
No 392
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=22.71 E-value=1.8e+02 Score=27.59 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=26.2
Q ss_pred CChhhhhccCCCeEEEcCCCCCCCC-ChHHHHHHHHHHCCCCEeeecHH
Q 039151 223 WPASETLKLKPDGVLFSNGPGDPSA-VPYAVAIVKELLGKVPVFGICMG 270 (279)
Q Consensus 223 ~~~~~i~~~~~DgIiLSgGPGdp~~-~~~~i~~Ir~~~~~~PILGICLG 270 (279)
.+.|.|.+.+||-||.++.. +... .....+.+++ .++|++-+...
T Consensus 112 pn~E~Ilal~PDLVi~~~~~-~~~~~~~~~~~~L~~--~Gipvv~~~~~ 157 (374)
T PRK14048 112 LSFETILTLKADLAILANWQ-ADTEAGQRAIEYLES--IGVPVIVVDFN 157 (374)
T ss_pred cCHHHHhhcCCCEEEecCcc-cccccchhHHHHHHH--CCCCEEEEeCC
Confidence 46788888999998876432 1111 1122233332 27899887643
No 393
>PRK09265 aminotransferase AlaT; Validated
Probab=22.59 E-value=1e+02 Score=29.37 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=46.5
Q ss_pred eeeEEEeecCCc-------------ccccccCCCCC---------C-cEEEeccCcccccCCCCCccccc-cceeeEEEE
Q 039151 30 VGEVVFNTSLTG-------------YQEILTDPSYA---------G-QFVLMTNPHIGNTGVNFDDEESR-QCFLAGLVI 85 (279)
Q Consensus 30 ~GEvVFnT~mtG-------------YqE~lTDPSY~---------g-Qiv~~TyP~IGNyGi~~~~~Es~-~~~~~g~iv 85 (279)
..+|+|++|.+. -.=++++|+|. | +++.+....-++|.++.+++|.. +..++.+++
T Consensus 95 ~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l 174 (404)
T PRK09265 95 VDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVI 174 (404)
T ss_pred cccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEEEE
Confidence 357888888763 22256788885 2 33332111124566766666542 234566776
Q ss_pred eccCCCCCcc-cc---CCCHHHHHHHcCceEEec
Q 039151 86 RSLSIGTSNW-RC---AETLGNYLAERNIMGIYD 115 (279)
Q Consensus 86 ~e~~~~~s~~-~~---~~sl~~~L~~~~ipgi~g 115 (279)
.... .|+-. -+ ...|.+++++++++-|.+
T Consensus 175 ~~P~-NPtG~~~~~~~~~~i~~~a~~~~~~ii~D 207 (404)
T PRK09265 175 INPN-NPTGAVYSKELLEEIVEIARQHNLIIFAD 207 (404)
T ss_pred ECCC-CCCCcCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 6542 33321 12 233566778888877654
No 394
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=22.52 E-value=3.9e+02 Score=22.47 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=18.2
Q ss_pred HHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEc
Q 039151 204 NILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFS 239 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLS 239 (279)
.+.+.+.+.|+++.+++...+.+ .+...++|++|++
T Consensus 20 g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 62 (264)
T cd01537 20 GIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIA 62 (264)
T ss_pred HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 34455556666666665443221 1122356777664
No 395
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=22.51 E-value=3.2e+02 Score=28.08 Aligned_cols=78 Identities=32% Similarity=0.423 Sum_probs=44.9
Q ss_pred CCCccEEEEEEc--Cc-hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEE------cCCCCCCCC-C-hHHHHHHH
Q 039151 188 NSKTYRVIAYDF--GI-KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF------SNGPGDPSA-V-PYAVAIVK 256 (279)
Q Consensus 188 ~~~~~~I~viD~--G~-k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiL------SgGPGdp~~-~-~~~i~~Ir 256 (279)
.+..+||+|+|- .+ -...+|.|..+|++++.+-.+ .+.-++ .+.+-||| |||- .+. . ...+.++.
T Consensus 382 ~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~-a~syim-~evtkvfLGahailsNG~--vysR~GTa~valvA 457 (556)
T KOG1467|consen 382 LGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLIN-AASYIM-LEVTKVFLGAHAILSNGA--VYSRVGTACVALVA 457 (556)
T ss_pred hCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEeh-hHHHHH-HhcceeeechhhhhcCcc--hhhhcchHHHHHHh
Confidence 356799999996 23 345789999999999876432 122333 35566666 2221 111 1 11121111
Q ss_pred HHHCCCCEeeecHH
Q 039151 257 ELLGKVPVFGICMG 270 (279)
Q Consensus 257 ~~~~~~PILGICLG 270 (279)
. ..++|++-.|--
T Consensus 458 n-a~nVPVlVCCE~ 470 (556)
T KOG1467|consen 458 N-AFNVPVLVCCEA 470 (556)
T ss_pred c-ccCCCEEEEech
Confidence 1 148999998854
No 396
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=22.39 E-value=1e+02 Score=28.75 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=21.7
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
-||.+|+. ||.. ....|+++- -++||.+||
T Consensus 156 ~Pd~l~Vi----Dp~~---e~iAv~EA~klgIPVvAlv 186 (252)
T COG0052 156 LPDVLFVI----DPRK---EKIAVKEANKLGIPVVALV 186 (252)
T ss_pred CCCEEEEe----CCcH---hHHHHHHHHHcCCCEEEEe
Confidence 39999995 6764 334455555 499999998
No 397
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=22.38 E-value=2.4e+02 Score=26.43 Aligned_cols=44 Identities=20% Similarity=0.156 Sum_probs=30.1
Q ss_pred HHHHHHHHHCCCeEEEEcCCC--Chhhhh----ccCCCeEEEcCCCCCCC
Q 039151 203 HNILRRLASYGCQIIVVPSTW--PASETL----KLKPDGVLFSNGPGDPS 246 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~--~~~~i~----~~~~DgIiLSgGPGdp~ 246 (279)
..+.+.|++.|.+..++.... ++.++. ...+|.||..||=|..+
T Consensus 23 ~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~ 72 (301)
T COG1597 23 REVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVN 72 (301)
T ss_pred HHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHH
Confidence 346677888999888775432 333332 34799999999988554
No 398
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=22.26 E-value=1.7e+02 Score=30.24 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=28.7
Q ss_pred EEEEEEcCch-HHHHHHHHHCCCeEEEEcCCCChhhh
Q 039151 193 RVIAYDFGIK-HNILRRLASYGCQIIVVPSTWPASET 228 (279)
Q Consensus 193 ~I~viD~G~k-~~I~r~L~~~G~~v~vvp~~~~~~~i 228 (279)
-|+.+|||+. ..-++.++++|.++.|..++.+.+++
T Consensus 130 LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~~~~~~ 166 (575)
T PRK11070 130 LIVTVDNGISSHAGVAHAHALGIPVLVTDHHLPGETL 166 (575)
T ss_pred EEEEEcCCcCCHHHHHHHHHCCCCEEEECCCCCCCCC
Confidence 5788999985 56778889999999999988665443
No 399
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.20 E-value=3.9e+02 Score=26.53 Aligned_cols=89 Identities=16% Similarity=0.263 Sum_probs=47.0
Q ss_pred ccEEEEEEcCc--h---HHHHHHHHHCCCeEEE-EcCCCChh---hhhccCCCeEEEcCCCCCCC------CC--h--HH
Q 039151 191 TYRVIAYDFGI--K---HNILRRLASYGCQIIV-VPSTWPAS---ETLKLKPDGVLFSNGPGDPS------AV--P--YA 251 (279)
Q Consensus 191 ~~~I~viD~G~--k---~~I~r~L~~~G~~v~v-vp~~~~~~---~i~~~~~DgIiLSgGPGdp~------~~--~--~~ 251 (279)
+..+++||..- . .++++.+++.--++.+ ...-.+.+ .+.+...|+|.++-|||+.. .. + ..
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~lta 244 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITA 244 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHH
Confidence 46788888732 2 2355566543112222 22222333 34456899999988998631 10 1 24
Q ss_pred HHHHHHHH--CCCCEe---eecHHHHHH-HHHcC
Q 039151 252 VAIVKELL--GKVPVF---GICMGHQLL-GQALG 279 (279)
Q Consensus 252 i~~Ir~~~--~~~PIL---GICLGhQLL-a~AlG 279 (279)
+..++++. .++||+ ||..+-++. |+++|
T Consensus 245 i~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalG 278 (404)
T PRK06843 245 ICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAG 278 (404)
T ss_pred HHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcC
Confidence 44556665 378886 465554443 44444
No 400
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.04 E-value=2.4e+02 Score=24.71 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=25.4
Q ss_pred CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeecHH
Q 039151 223 WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGICMG 270 (279)
Q Consensus 223 ~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGICLG 270 (279)
.+.|.|.+.+||.||.+.+.. .. ...+.+++. .++|++-++..
T Consensus 65 ~n~E~i~~l~PDLIi~~~~~~-~~---~~~~~l~~~-~gipvv~~~~~ 107 (262)
T cd01147 65 PNYEKIAALKPDVVIDVGSDD-PT---SIADDLQKK-TGIPVVVLDGG 107 (262)
T ss_pred CCHHHHHhcCCCEEEEecCCc-cc---hhHHHHHHh-hCCCEEEEecC
Confidence 467888888999888864422 11 122333321 35788777754
No 401
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.97 E-value=4.3e+02 Score=22.98 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=31.0
Q ss_pred HHHHHHHHC-----CCeEEEEcCCCChhh-------hhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 204 NILRRLASY-----GCQIIVVPSTWPASE-------TLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 204 ~I~r~L~~~-----G~~v~vvp~~~~~~~-------i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
.+.+.+.+. |+++.+.....+.++ +...++||||+.+ .++.. ..+.++++. .++|+.-+
T Consensus 20 gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~--~~~~~---~~~~i~~~~~~gIpvV~~ 91 (274)
T cd06311 20 HAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILP--FESAP---LTQPVAKAKKAGIFVVVV 91 (274)
T ss_pred HHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCchh---hHHHHHHHHHCCCeEEEE
Confidence 344555554 677777765433221 2235799999963 23322 223344444 47776543
No 402
>PRK10667 Hha toxicity attenuator; Provisional
Probab=21.88 E-value=15 Score=30.20 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=12.9
Q ss_pred ccCcccccCCCCCcc
Q 039151 59 TNPHIGNTGVNFDDE 73 (279)
Q Consensus 59 TyP~IGNyGi~~~~~ 73 (279)
||-|.||||||..+.
T Consensus 83 Ty~LF~sy~I~~~dl 97 (122)
T PRK10667 83 TYMLFSSYGINDQDL 97 (122)
T ss_pred HHHHhcCCCCCHHHH
Confidence 788999999998664
No 403
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.88 E-value=3.8e+02 Score=21.06 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=35.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEee
Q 039151 203 HNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFG 266 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILG 266 (279)
..+-+.++++|.++++...... .++. ..++|.++++ | . .....+.+++.. .++|+-=
T Consensus 18 ~km~~~a~~~gi~~~i~a~~~~e~~~~-~~~~Dvill~--P---Q-v~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 18 NALNKGAKERGVPLEAAAGAYGSHYDM-IPDYDLVILA--P---Q-MASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred HHHHHHHHHCCCcEEEEEeeHHHHHHh-ccCCCEEEEc--C---h-HHHHHHHHHHHhhhcCCCEEE
Confidence 3456778889999887754332 2222 2478977773 3 3 456677777776 3688753
No 404
>PRK06756 flavodoxin; Provisional
Probab=21.72 E-value=4.4e+02 Score=21.32 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=33.3
Q ss_pred HHHHHHHHCCCeEEEEcCCC--ChhhhhccCCCeEEEcCCCCC-CCCCh-HHHHHHHHH----HCCCCEeeecH
Q 039151 204 NILRRLASYGCQIIVVPSTW--PASETLKLKPDGVLFSNGPGD-PSAVP-YAVAIVKEL----LGKVPVFGICM 269 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~--~~~~i~~~~~DgIiLSgGPGd-p~~~~-~~i~~Ir~~----~~~~PILGICL 269 (279)
.|.+.|.+.|.++.+++... ...++ .++|+|++. .|-- -...+ ...++++++ +.++|+.-++.
T Consensus 21 ~ia~~l~~~g~~v~~~~~~~~~~~~~~--~~~d~vi~g-spt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt 91 (148)
T PRK06756 21 HIAGVIRETENEIEVIDIMDSPEASIL--EQYDGIILG-AYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGS 91 (148)
T ss_pred HHHHHHhhcCCeEEEeehhccCCHHHH--hcCCeEEEE-eCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeC
Confidence 35556667788888876432 23344 378999993 2311 01122 244444443 24677655544
No 405
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=21.65 E-value=3.3e+02 Score=25.67 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=33.9
Q ss_pred EEEEEEcCchHHHHHHHHHCCCeEEEEcCC-----CChhhhhc-------cCCCeEEEcCCCCCCCC
Q 039151 193 RVIAYDFGIKHNILRRLASYGCQIIVVPST-----WPASETLK-------LKPDGVLFSNGPGDPSA 247 (279)
Q Consensus 193 ~I~viD~G~k~~I~r~L~~~G~~v~vvp~~-----~~~~~i~~-------~~~DgIiLSgGPGdp~~ 247 (279)
+|++-+.+. ..+...++..|+++..+|.+ .+.+++.+ .+++.|++++ |.+|.-
T Consensus 118 ~Vlv~~P~y-~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~-P~NPTG 182 (374)
T PRK02610 118 SILVAEPTF-SMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVH-PNSPTG 182 (374)
T ss_pred eEEEcCCCh-HHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeC-CCCCCC
Confidence 566666544 34455667789998888743 23444432 3678888886 888864
No 406
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=21.62 E-value=1.5e+02 Score=27.39 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=38.0
Q ss_pred EEEEEEcCch-HHHHHHHHHCCCeEEEEcCCCChhhhhccCCC-eEEEcCCCCCCCCC----hHHHHHHHHHHCCCCEee
Q 039151 193 RVIAYDFGIK-HNILRRLASYGCQIIVVPSTWPASETLKLKPD-GVLFSNGPGDPSAV----PYAVAIVKELLGKVPVFG 266 (279)
Q Consensus 193 ~I~viD~G~k-~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~D-gIiLSgGPGdp~~~----~~~i~~Ir~~~~~~PILG 266 (279)
.++++|-|.. ..+.++|... ..++|+-++......+...++ -+++.||--+|... ....+.++++.-++=++|
T Consensus 108 d~Ifld~GtT~~~la~~L~~~-~~ltVvTnsl~ia~~l~~~~~~~v~llGG~~~~~~~~~~G~~a~~~l~~~~~d~afig 186 (269)
T PRK09802 108 HRVILDSGTTTFEIARLMRKH-TDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLG 186 (269)
T ss_pred CEEEECCchHHHHHHHhcCcC-CCeEEEeCCHHHHHHHHhCCCCEEEEECCEEecCCCceECHHHHHHHHhccCCEEEEc
Confidence 5788888874 4566666432 247777665433222221222 36666776555431 345556665543444443
No 407
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=21.59 E-value=1.9e+02 Score=26.30 Aligned_cols=73 Identities=10% Similarity=0.187 Sum_probs=41.6
Q ss_pred EEEEEEcCch-HHHHHHHHHCCCeEEEEcCCCCh-hhhhc-cCCCeEEEcCCCCCCCCC----hHHHHHHHHHHCCCCEe
Q 039151 193 RVIAYDFGIK-HNILRRLASYGCQIIVVPSTWPA-SETLK-LKPDGVLFSNGPGDPSAV----PYAVAIVKELLGKVPVF 265 (279)
Q Consensus 193 ~I~viD~G~k-~~I~r~L~~~G~~v~vvp~~~~~-~~i~~-~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~~~~PIL 265 (279)
.++++|.|.. ..+.+.|... ..++|+.++... ..+.. .+.+ +++.||--+|... +...+.++.+.-++=++
T Consensus 93 ~tIflD~GtT~~~la~~L~~~-~~ltVvTNsl~ia~~l~~~~~~~-villGG~~~~~~~~~~G~~a~~~l~~~~~d~afi 170 (252)
T PRK10906 93 ATLFIDIGTTPEAVAHALLNH-SNLRIVTNNLNVANTLMAKEDFR-IILAGGELRSRDGGIIGEATLDFISQFRLDFGIL 170 (252)
T ss_pred CEEEEcCcHHHHHHHHHhcCC-CCcEEEECcHHHHHHHhhCCCCE-EEEECCEEecCCCccCCHHHHHHHHhccCCEEEE
Confidence 5889999874 4566777542 247777665433 33332 1233 6666776555432 34666777665454444
Q ss_pred ee
Q 039151 266 GI 267 (279)
Q Consensus 266 GI 267 (279)
|.
T Consensus 171 ~~ 172 (252)
T PRK10906 171 GI 172 (252)
T ss_pred cC
Confidence 43
No 408
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=21.59 E-value=1.2e+02 Score=27.00 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=21.4
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
-||.||+. ||... ...++++. -++|+.|||
T Consensus 143 ~P~~vii~----~~~~~---~~~i~Ea~~l~IP~i~i~ 173 (211)
T PF00318_consen 143 LPDLVIIL----DPNKN---KNAIREANKLNIPTIAIV 173 (211)
T ss_dssp SBSEEEES----STTTT---HHHHHHHHHTTS-EEEEE
T ss_pred cCcEEEEe----ccccc---chhHHHHHhcCceEEEee
Confidence 49999996 55443 45567777 699999998
No 409
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=21.52 E-value=2.8e+02 Score=23.97 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=28.4
Q ss_pred EEEEEEcCc-hHHHHHHHHHCCCeEEEEcCC-C---Chh----h-hhccCCCeEEEc
Q 039151 193 RVIAYDFGI-KHNILRRLASYGCQIIVVPST-W---PAS----E-TLKLKPDGVLFS 239 (279)
Q Consensus 193 ~I~viD~G~-k~~I~r~L~~~G~~v~vvp~~-~---~~~----~-i~~~~~DgIiLS 239 (279)
+|++.---- ...+.+.|++.|+++..+|.- . +.. . ....++|.|+++
T Consensus 3 ~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iift 59 (249)
T PRK05928 3 KILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFT 59 (249)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEE
Confidence 444443322 245678899999999888742 1 111 1 112479999997
No 410
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=21.45 E-value=1.1e+02 Score=29.76 Aligned_cols=43 Identities=16% Similarity=0.365 Sum_probs=30.2
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeec--HHHHHH
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGIC--MGHQLL 274 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGIC--LGhQLL 274 (279)
+.|+|-++-|||...-..--+...|.+. -++|+.||+ .||-+.
T Consensus 70 did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~PligV~HlegHi~a 116 (345)
T PTZ00340 70 DISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEM 116 (345)
T ss_pred HCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCEeecchHHHHHHH
Confidence 4689999999997654444445555554 599999997 355443
No 411
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.44 E-value=1.6e+02 Score=24.70 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=24.0
Q ss_pred CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151 223 WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 223 ~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI 267 (279)
.+.|.+.+.+||-||.+++..+. ...+.+++ .++|++-|
T Consensus 60 ~n~E~ll~l~PDlii~~~~~~~~----~~~~~l~~--~gIpvv~i 98 (186)
T cd01141 60 LNVELIVALKPDLVILYGGFQAQ----TILDKLEQ--LGIPVLYV 98 (186)
T ss_pred CCHHHHhccCCCEEEEecCCCch----hHHHHHHH--cCCCEEEe
Confidence 46788888999999886553321 12222322 26777666
No 412
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=21.35 E-value=3.3e+02 Score=24.50 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNG 241 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgG 241 (279)
..|.+.+.+.|+.+.+.+.+.+.+ .+...++||||+.+.
T Consensus 76 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 121 (327)
T PRK10423 76 RGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCT 121 (327)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456677788899988876543322 123457999999743
No 413
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=21.32 E-value=92 Score=28.70 Aligned_cols=34 Identities=21% Similarity=0.520 Sum_probs=26.3
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHH
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGH 271 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGh 271 (279)
++|.+|.-||=| -.+...+.+. .++|+|||=+|+
T Consensus 25 ~~Dlvi~iGGDG------TlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 25 EADVIVALGGDG------FMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cCCEEEEECCCH------HHHHHHHHhcCCCCeEEEEeCCC
Confidence 578888888865 3556667766 589999998886
No 414
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=21.31 E-value=3.5e+02 Score=21.19 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEE
Q 039151 205 ILRRLASYGCQIIVVPST-WPASETLKLKPDGVLF 238 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiL 238 (279)
|.+.+...|+++.+++.+ .+..++. ++|.||+
T Consensus 19 i~~~~~~~g~~v~~~~~~~~~~~~l~--~~d~iil 51 (140)
T TIGR01753 19 IAEGLKEAGAEVDLLEVADADAEDLL--SYDAVLL 51 (140)
T ss_pred HHHHHHhcCCeEEEEEcccCCHHHHh--cCCEEEE
Confidence 445566678889888754 3445553 5899888
No 415
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=21.28 E-value=43 Score=30.89 Aligned_cols=38 Identities=21% Similarity=0.477 Sum_probs=25.7
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeecH
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGICM 269 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGICL 269 (279)
+.|+|.++-|||+..-..--+...|.+. -++|+.||..
T Consensus 50 did~iavt~GPGsftgLrvG~~~Ak~La~~~~~Pli~v~~ 89 (268)
T PF00814_consen 50 DIDAIAVTRGPGSFTGLRVGLSFAKGLALALNIPLIGVSH 89 (268)
T ss_dssp GESEEEEEEESS-HHHHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred HCCEEEEecCCCcccccHHHHHHHHHHHHHhCCCeEeecc
Confidence 5689999999998764444455556554 5999999974
No 416
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=21.27 E-value=4.2e+02 Score=22.77 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=21.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhh-------hhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASE-------TLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~-------i~~~~~DgIiLSg 240 (279)
..+.+.+++.|+.+.+.+.+.+.++ +...++||||+.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~ 63 (265)
T cd06291 19 RAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGT 63 (265)
T ss_pred HHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 3455666777877776654322211 1234678888754
No 417
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.19 E-value=4.7e+02 Score=25.53 Aligned_cols=46 Identities=28% Similarity=0.337 Sum_probs=27.0
Q ss_pred cEEEEEEcC-chHHHH-HHHHHCCCeEEEEcCCCC----hhhhhccCCCeEEE
Q 039151 192 YRVIAYDFG-IKHNIL-RRLASYGCQIIVVPSTWP----ASETLKLKPDGVLF 238 (279)
Q Consensus 192 ~~I~viD~G-~k~~I~-r~L~~~G~~v~vvp~~~~----~~~i~~~~~DgIiL 238 (279)
+||+++|.. +....+ +.|...+ +++++-...+ .+.+....||-|.+
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~-~i~vv~~a~ng~~a~~~~~~~~PDVi~l 53 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDP-DIEVVGTARNGREAIDKVKKLKPDVITL 53 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCC-CeEEEEecCCHHHHHHHHHhcCCCEEEE
Confidence 689999985 344444 4455444 4455533322 33455678998887
No 418
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=21.12 E-value=1.7e+02 Score=23.12 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=25.2
Q ss_pred cEEEEEEcCchHHHHHHHHH-CCCeEEEEcCCC-Ch-------hhhhccCCCeEEEcCCCC
Q 039151 192 YRVIAYDFGIKHNILRRLAS-YGCQIIVVPSTW-PA-------SETLKLKPDGVLFSNGPG 243 (279)
Q Consensus 192 ~~I~viD~G~k~~I~r~L~~-~G~~v~vvp~~~-~~-------~~i~~~~~DgIiLSgGPG 243 (279)
..+..+|.-...-.++.+.+ ...++..+...+ +. +.+.+..|+..++.|||.
T Consensus 17 ~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 17 FIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred CeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 34455554444444555544 455555544321 11 112234567777777764
No 419
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=21.07 E-value=4.1e+02 Score=26.06 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=49.9
Q ss_pred ccEEEEEEc--Cc-hHHHHHHHHHC--CCeEEEEcCCC----Chhhhh-------ccCCCeEEEcCCCCCCCCCh--HHH
Q 039151 191 TYRVIAYDF--GI-KHNILRRLASY--GCQIIVVPSTW----PASETL-------KLKPDGVLFSNGPGDPSAVP--YAV 252 (279)
Q Consensus 191 ~~~I~viD~--G~-k~~I~r~L~~~--G~~v~vvp~~~----~~~~i~-------~~~~DgIiLSgGPGdp~~~~--~~i 252 (279)
+.+|+||-- |. .+.|++.+.++ ++++.++|... .+.+|. ...+|.|||.=|-|+..|.- ...
T Consensus 135 p~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e 214 (438)
T PRK00286 135 PKRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDE 214 (438)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcH
Confidence 468999975 43 67888888776 47888888753 233332 12379999988888766531 234
Q ss_pred HHHHHHH-CCCCEe
Q 039151 253 AIVKELL-GKVPVF 265 (279)
Q Consensus 253 ~~Ir~~~-~~~PIL 265 (279)
+.++.+. ..+||+
T Consensus 215 ~v~~ai~~~~~Pvi 228 (438)
T PRK00286 215 AVARAIAASRIPVI 228 (438)
T ss_pred HHHHHHHcCCCCEE
Confidence 5556666 489986
No 420
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=21.04 E-value=1.6e+02 Score=28.56 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=46.3
Q ss_pred EEEc--CchHHHHHHHHHCCCeEEEEcCC---------CChhhhhccCCCeEEEcCCCCCCCCC------hH--HHHHHH
Q 039151 196 AYDF--GIKHNILRRLASYGCQIIVVPST---------WPASETLKLKPDGVLFSNGPGDPSAV------PY--AVAIVK 256 (279)
Q Consensus 196 viD~--G~k~~I~r~L~~~G~~v~vvp~~---------~~~~~i~~~~~DgIiLSgGPGdp~~~------~~--~i~~Ir 256 (279)
+.|| |.-.++.-.+.+.+.++.++.-. .++.-+....||.+||.--|+.+... +. ..-.+.
T Consensus 203 ~~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P~~ip~leevi~l~ 282 (339)
T COG3367 203 VMDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFPEPIPPLEEVIALY 282 (339)
T ss_pred hHHHHHHHHHHHHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCCCcCCCHHHHHHHH
Confidence 5566 55566666666667777777432 22333445689999998777754432 21 222333
Q ss_pred HHHCCCCEeeecHH
Q 039151 257 ELLGKVPVFGICMG 270 (279)
Q Consensus 257 ~~~~~~PILGICLG 270 (279)
..+.+.++.|||+-
T Consensus 283 e~l~~a~Vvgi~lN 296 (339)
T COG3367 283 ELLSNAKVVGIALN 296 (339)
T ss_pred HHccCCcEEEEEec
Confidence 44478999999983
No 421
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=21.00 E-value=5.1e+02 Score=23.29 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 204 NILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
.+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+
T Consensus 82 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 125 (328)
T PRK11303 82 YLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVST 125 (328)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 45566777899988875432222 12345899999964
No 422
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=20.98 E-value=7.3e+02 Score=23.62 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=44.5
Q ss_pred ccEEEEEEcCchHHHHHHHHHCCCeEEEEcCC-C-Ch---h-------hhhccCCCeEEEcCCCCCCCCChHHHHHHH--
Q 039151 191 TYRVIAYDFGIKHNILRRLASYGCQIIVVPST-W-PA---S-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVK-- 256 (279)
Q Consensus 191 ~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~-~-~~---~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir-- 256 (279)
+.||+|---.-...+.+.|+++|.++..+|.- . +. . .+....+|.||++.+.| .....+.++
T Consensus 11 g~rIlvtr~~~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ng----v~~~~~~l~~~ 86 (381)
T PRK07239 11 GFTVGVTAARRAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIG----FRGWVEAADGW 86 (381)
T ss_pred CcEEEEeccCCHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHH----HHHHHHHHHHc
Confidence 56888886432355788999999999988742 1 11 1 11223699999974333 222222221
Q ss_pred -------HHHCCCCEeeecHH
Q 039151 257 -------ELLGKVPVFGICMG 270 (279)
Q Consensus 257 -------~~~~~~PILGICLG 270 (279)
..+.+.|++.|--+
T Consensus 87 ~~~~~~~~~l~~~~i~aVG~~ 107 (381)
T PRK07239 87 GLADELLEALSSARLLARGPK 107 (381)
T ss_pred CChHHHHHHHcCCeEEEECcc
Confidence 22467788777533
No 423
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=20.93 E-value=1.9e+02 Score=26.38 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=35.8
Q ss_pred EEEEEEcCch-HHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHHCCCCEee
Q 039151 193 RVIAYDFGIK-HNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELLGKVPVFG 266 (279)
Q Consensus 193 ~I~viD~G~k-~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~~~~PILG 266 (279)
..+++|.|.+ ..+.+.|....- ++++-++.+ +..+....-.-+++.||.-.+... +...+.++.+--++=++|
T Consensus 93 ~~ifld~GTT~~~la~~L~~~~~-ltviTNsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~aFig 171 (253)
T COG1349 93 DTIFLDAGTTTLALARALPDDNN-LTVITNSLNIAAALLEKPNIEVILLGGTVRKKSGSFVGPLAEEFLRQFNFDKAFIG 171 (253)
T ss_pred CEEEECCCcHHHHHHHHhCcCCC-eEEEeCCHHHHHHHHhCCCCeEEEeCcEEEcCCCeEEcHHHHHHHHhCcccEEEEe
Confidence 5778888874 456666654322 666655543 333333222334556665444321 234444444433443443
No 424
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=20.90 E-value=6e+02 Score=24.62 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=42.6
Q ss_pred EcCchHHHHHHHHHC-CCeEEEEcCCCC---hhhhhccCCCeEEEcCCCCCCCC-Ch---HHHHHHHHHH-CCCCEe---
Q 039151 198 DFGIKHNILRRLASY-GCQIIVVPSTWP---ASETLKLKPDGVLFSNGPGDPSA-VP---YAVAIVKELL-GKVPVF--- 265 (279)
Q Consensus 198 D~G~k~~I~r~L~~~-G~~v~vvp~~~~---~~~i~~~~~DgIiLSgGPGdp~~-~~---~~i~~Ir~~~-~~~PIL--- 265 (279)
|-...+..+++|++. +..+. +---.+ +....+...|+|++||..|..-+ .+ ..+..|++.+ .++|++
T Consensus 205 ~~~~~~~~l~~lr~~~~~Pvi-vKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dG 283 (351)
T cd04737 205 KQKLSPADIEFIAKISGLPVI-VKGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDS 283 (351)
T ss_pred cCCCCHHHHHHHHHHhCCcEE-EecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEEC
Confidence 434567778888764 44443 321122 23334568999999986664322 12 2334444455 478988
Q ss_pred eecHHHHHH
Q 039151 266 GICMGHQLL 274 (279)
Q Consensus 266 GICLGhQLL 274 (279)
||.-|..++
T Consensus 284 GIr~g~Di~ 292 (351)
T cd04737 284 GVRRGEHVF 292 (351)
T ss_pred CCCCHHHHH
Confidence 466666554
No 425
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.71 E-value=5e+02 Score=25.72 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=23.5
Q ss_pred cEEEEEEcCch-HHHHHHHHHCCCeEEEEcC
Q 039151 192 YRVIAYDFGIK-HNILRRLASYGCQIIVVPS 221 (279)
Q Consensus 192 ~~I~viD~G~k-~~I~r~L~~~G~~v~vvp~ 221 (279)
.+|+++-+|.. .++.+.|.+.|+.|.+...
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~ 46 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADD 46 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECC
Confidence 47899888753 4788999999998887753
No 426
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=20.61 E-value=1.2e+02 Score=30.40 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=25.7
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeec
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGIC 268 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGIC 268 (279)
+.|+|.++.|||.+.-...-...-|.+. -++|+.||.
T Consensus 69 ~id~iav~~gPg~~~~l~vg~~~ak~la~~~~~~~~~v~ 107 (535)
T PRK09605 69 DIDLVAFSQGPGLGPCLRVVATAARALALSLDVPLIGVN 107 (535)
T ss_pred hCCEEEECCCCCcHhhHHHHHHHHHHHHHHhCCCeeccc
Confidence 4689999999997664433334444443 489999995
No 427
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=20.32 E-value=91 Score=28.88 Aligned_cols=84 Identities=18% Similarity=0.013 Sum_probs=47.6
Q ss_pred ccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEEEeccCCCCCccccCCCHHHHH----HHcCceEEecCchH
Q 039151 44 EILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYL----AERNIMGIYDVDTR 119 (279)
Q Consensus 44 E~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~L----~~~~ipgi~gvDTR 119 (279)
|.+.+---.||=+++.-+|+||+-+-.--+.. .... .+|.+... ...+++++ .+.|+.-|..=+.|
T Consensus 110 e~l~~a~~~gkgvI~lt~H~GnwE~~~~~~~~-~~~~-~~vyr~~~--------n~~~d~l~~~~R~~~g~~~i~~~~~r 179 (303)
T TIGR02207 110 EHLQRAQKQGRGVLLVGVHFLTLELGARIFGQ-QQPG-IGVYRPHN--------NPLFDWIQTRGRLRSNKAMIDRKDLR 179 (303)
T ss_pred HHHHHHHhcCCCEEEEecchhHHHHHHHHHHc-cCCC-eEEEeCCC--------CHHHHHHHHHHHHhcCCcccCcccHH
Confidence 34444333577788999999998654211111 1112 34555432 12244443 44565556555689
Q ss_pred HHHHHhhhcCceeEEEecC
Q 039151 120 AITRRLRQDGSLIGVLSTE 138 (279)
Q Consensus 120 aLt~~iR~~G~m~g~i~~~ 138 (279)
++.|.||+.| +.|++.++
T Consensus 180 ~i~~~Lk~g~-~v~il~Dq 197 (303)
T TIGR02207 180 GMIKALKNGE-RIWYAPDH 197 (303)
T ss_pred HHHHHHhCCC-eEEEeCCC
Confidence 9999999665 56776553
No 428
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=20.23 E-value=2.1e+02 Score=24.74 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=19.0
Q ss_pred HHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 204 NILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
.+.+.+.+.|+.+.+++.+.+.+ .+...++||||+.+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (269)
T cd06275 20 GVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMC 63 (269)
T ss_pred HHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEec
Confidence 34455566677766654332221 12234677777753
No 429
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.20 E-value=2.1e+02 Score=24.66 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=23.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
..+.+.+.+.|+.+.+++.+.+.+ .+...++||||+.+
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~ 64 (269)
T cd06288 20 LGAQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYAT 64 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 445566777788887776543321 22345788888864
No 430
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=20.06 E-value=4.8e+02 Score=23.26 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=31.7
Q ss_pred hHHHHHHHHHCCC-eEEEE-cCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 202 KHNILRRLASYGC-QIIVV-PSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 202 k~~I~r~L~~~G~-~v~vv-p~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
...+.+.+.++|. .+.+. +.+.+.+ .+...++||||+++ -++ ....+.++++. .++|+.-+
T Consensus 17 ~~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~--~~~---~~~~~~l~~~~~~giPvV~~ 87 (302)
T TIGR02637 17 NKGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISA--NDP---DALVPALKKAMKRGIKVVTW 87 (302)
T ss_pred HHHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCh---HHHHHHHHHHHHCCCEEEEe
Confidence 3456677788884 44433 3332221 12245899999963 222 22334445544 46676543
No 431
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=20.04 E-value=2.5e+02 Score=25.90 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=26.4
Q ss_pred CCCeEEEcCCCCCCCCC---hHHHHHHHHHH-CCCCEeeecHHH
Q 039151 232 KPDGVLFSNGPGDPSAV---PYAVAIVKELL-GKVPVFGICMGH 271 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~---~~~i~~Ir~~~-~~~PILGICLGh 271 (279)
.-..+|+.||..-|... ...-+.|.... ++-=.||||-|.
T Consensus 49 ~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~ 92 (253)
T COG4285 49 TTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGG 92 (253)
T ss_pred ceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccc
Confidence 44578888777556532 12335566666 578899999884
No 432
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=20.01 E-value=1.2e+02 Score=25.38 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=14.1
Q ss_pred cEEEEEEcCchHHHHHHHHHCCCeEEEEc
Q 039151 192 YRVIAYDFGIKHNILRRLASYGCQIIVVP 220 (279)
Q Consensus 192 ~~I~viD~G~k~~I~r~L~~~G~~v~vvp 220 (279)
.+|++|-+ -..+++.|++.++++.++.
T Consensus 12 ~~V~~VG~--f~P~~~~l~~~~~~v~v~d 38 (147)
T PF04016_consen 12 DKVGMVGY--FQPLVEKLKERGAEVRVFD 38 (147)
T ss_dssp SEEEEES----HCCHHHHCCCCSEEEEEE
T ss_pred CEEEEEcC--cHHHHHHHhcCCCCEEEEE
Confidence 46666642 1124556666666666664
Done!