Query 039151
Match_columns 279
No_of_seqs 322 out of 2093
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 11:11:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a9x_B Carbamoyl phosphate syn 100.0 3.4E-98 1E-102 716.2 28.6 271 6-279 2-279 (379)
2 1s1m_A CTP synthase; CTP synth 100.0 6.9E-33 2.4E-37 275.2 -4.3 199 55-279 172-390 (545)
3 1vco_A CTP synthetase; tetrame 100.0 7.8E-31 2.7E-35 260.7 -3.6 200 55-279 183-402 (550)
4 3nva_A CTP synthase; rossman f 99.8 2E-20 6.7E-25 184.5 3.2 175 72-279 199-397 (535)
5 1i1q_B Anthranilate synthase c 99.7 3.7E-18 1.2E-22 147.3 10.2 88 192-279 1-94 (192)
6 1wl8_A GMP synthase [glutamine 99.7 3.2E-17 1.1E-21 140.7 11.4 87 192-279 1-90 (189)
7 1qdl_B Protein (anthranilate s 99.7 2.9E-17 1E-21 142.1 10.9 86 194-279 4-95 (195)
8 3r75_A Anthranilate/para-amino 99.7 2.4E-16 8.3E-21 159.5 12.0 87 190-279 445-539 (645)
9 3uow_A GMP synthetase; structu 99.7 2.7E-16 9.3E-21 156.7 10.7 88 192-279 8-101 (556)
10 4gud_A Imidazole glycerol phos 99.7 7.1E-17 2.4E-21 140.4 5.7 81 193-279 4-90 (211)
11 2vpi_A GMP synthase; guanine m 99.6 8.7E-17 3E-21 142.3 5.7 87 192-279 25-114 (218)
12 2a9v_A GMP synthase; structura 99.6 2.6E-16 9E-21 138.3 8.7 87 191-279 13-103 (212)
13 3tqi_A GMP synthase [glutamine 99.6 1.9E-16 6.7E-21 156.7 6.8 87 192-279 11-100 (527)
14 2ywb_A GMP synthase [glutamine 99.6 3.6E-16 1.2E-20 153.8 6.7 86 193-279 1-89 (503)
15 1gpm_A GMP synthetase, XMP ami 99.6 4.6E-16 1.6E-20 153.9 7.1 87 192-279 8-97 (525)
16 2vxo_A GMP synthase [glutamine 99.6 1E-15 3.5E-20 156.2 4.2 88 191-279 29-119 (697)
17 3l7n_A Putative uncharacterize 99.6 1.4E-14 4.7E-19 129.0 10.4 86 192-279 1-102 (236)
18 3fij_A LIN1909 protein; 11172J 99.5 2.2E-14 7.7E-19 129.2 7.9 77 202-279 30-126 (254)
19 2v4u_A CTP synthase 2; pyrimid 99.5 5.8E-15 2E-19 135.8 4.0 88 190-279 24-137 (289)
20 2ywj_A Glutamine amidotransfer 99.5 1.4E-14 4.7E-19 123.7 5.7 81 192-279 1-86 (186)
21 1gpw_B Amidotransferase HISH; 99.5 1.5E-14 5E-19 125.0 5.8 81 192-279 1-95 (201)
22 1o1y_A Conserved hypothetical 99.5 5.7E-14 2E-18 125.5 9.7 88 191-279 12-111 (239)
23 3m3p_A Glutamine amido transfe 99.5 2.2E-13 7.4E-18 123.2 11.1 86 192-279 4-100 (250)
24 1ka9_H Imidazole glycerol phos 99.5 3.6E-14 1.2E-18 122.8 5.2 80 192-277 3-91 (200)
25 1l9x_A Gamma-glutamyl hydrolas 99.4 2.6E-13 8.8E-18 126.3 9.5 77 203-279 55-142 (315)
26 2nv0_A Glutamine amidotransfer 99.4 1.3E-13 4.4E-18 118.6 5.3 83 192-279 2-90 (196)
27 1q7r_A Predicted amidotransfer 99.4 1.1E-13 3.8E-18 121.7 4.3 84 191-279 23-112 (219)
28 2iss_D Glutamine amidotransfer 99.4 2.1E-13 7.1E-18 118.9 5.0 85 190-279 19-109 (208)
29 2w7t_A CTP synthetase, putativ 99.4 5.8E-13 2E-17 121.5 7.1 86 192-279 9-114 (273)
30 2ywd_A Glutamine amidotransfer 99.3 4.3E-13 1.5E-17 114.4 3.2 83 192-279 3-92 (191)
31 3d54_D Phosphoribosylformylgly 99.3 6.7E-12 2.3E-16 108.6 7.5 81 192-277 3-95 (213)
32 2abw_A PDX2 protein, glutamina 99.2 6E-12 2E-16 110.8 3.1 84 191-279 3-98 (227)
33 1jvn_A Glutamine, bifunctional 99.1 1.1E-11 3.6E-16 123.5 2.9 83 192-278 5-96 (555)
34 2vdj_A Homoserine O-succinyltr 98.8 4E-09 1.4E-13 97.8 6.4 89 190-278 34-152 (301)
35 2h2w_A Homoserine O-succinyltr 98.8 4.9E-09 1.7E-13 97.7 7.0 89 190-278 46-164 (312)
36 1fy2_A Aspartyl dipeptidase; s 98.6 3.6E-08 1.2E-12 87.5 4.8 81 192-276 32-128 (229)
37 3ugj_A Phosphoribosylformylgly 98.5 1.3E-07 4.5E-12 102.1 8.8 86 190-277 1046-1152(1303)
38 3l4e_A Uncharacterized peptida 98.4 2.4E-07 8.3E-12 81.2 5.5 82 191-276 27-128 (206)
39 1oi4_A Hypothetical protein YH 98.2 4.5E-06 1.5E-10 71.4 9.7 87 191-277 23-134 (193)
40 3l18_A Intracellular protease 98.1 1E-05 3.4E-10 67.2 8.4 86 192-277 3-111 (168)
41 2vrn_A Protease I, DR1199; cys 97.8 4.7E-05 1.6E-09 64.3 8.3 87 191-277 9-124 (190)
42 4hcj_A THIJ/PFPI domain protei 97.8 4E-05 1.4E-09 65.3 7.7 73 205-277 27-117 (177)
43 2rk3_A Protein DJ-1; parkinson 97.7 6.8E-05 2.3E-09 63.9 7.7 86 192-277 4-115 (197)
44 2ab0_A YAJL; DJ-1/THIJ superfa 97.7 7.5E-05 2.6E-09 64.3 7.0 85 193-277 4-116 (205)
45 1vhq_A Enhancing lycopene bios 97.6 0.00015 5.3E-09 63.6 8.2 87 192-278 7-150 (232)
46 4e08_A DJ-1 beta; flavodoxin-l 97.6 0.00015 5.2E-09 61.4 7.7 86 192-277 6-116 (190)
47 2fex_A Conserved hypothetical 97.5 0.00026 8.7E-09 59.9 7.5 74 204-277 19-110 (188)
48 3f5d_A Protein YDEA; unknow pr 97.4 0.00076 2.6E-08 58.5 10.3 73 204-277 21-109 (206)
49 3cne_A Putative protease I; st 97.4 0.00067 2.3E-08 56.4 8.8 72 206-277 22-120 (175)
50 3l3b_A ES1 family protein; ssg 97.3 0.00035 1.2E-08 62.3 7.0 74 205-278 47-168 (242)
51 3ot1_A 4-methyl-5(B-hydroxyeth 97.3 0.0003 1E-08 60.7 6.0 86 192-277 10-121 (208)
52 1u9c_A APC35852; structural ge 97.3 0.00068 2.3E-08 58.6 8.0 74 204-277 33-138 (224)
53 3efe_A THIJ/PFPI family protei 97.3 0.0014 4.9E-08 56.6 10.0 85 193-277 7-121 (212)
54 3uk7_A Class I glutamine amido 97.2 0.0012 4E-08 62.2 9.3 87 191-277 205-330 (396)
55 3gra_A Transcriptional regulat 97.2 0.0013 4.4E-08 56.5 8.6 87 191-277 5-117 (202)
56 3ej6_A Catalase-3; heme, hydro 97.1 0.0022 7.4E-08 65.3 10.8 87 191-277 537-646 (688)
57 3uk7_A Class I glutamine amido 97.1 0.0019 6.5E-08 60.7 9.5 86 192-277 13-137 (396)
58 3n7t_A Macrophage binding prot 97.1 0.00033 1.1E-08 62.7 3.9 47 231-277 104-154 (247)
59 3fse_A Two-domain protein cont 96.9 0.0025 8.5E-08 60.3 8.3 87 191-277 10-121 (365)
60 1rw7_A YDR533CP; alpha-beta sa 96.9 0.00066 2.2E-08 60.0 3.9 47 231-277 97-147 (243)
61 3ttv_A Catalase HPII; heme ori 96.8 0.0018 6.2E-08 66.4 7.2 86 191-277 600-708 (753)
62 3kkl_A Probable chaperone prot 96.8 0.00067 2.3E-08 60.5 3.5 47 231-277 97-147 (244)
63 2iuf_A Catalase; oxidoreductas 96.5 0.0053 1.8E-07 62.5 8.1 87 191-277 529-648 (688)
64 1sy7_A Catalase 1; heme oxidat 96.5 0.0044 1.5E-07 63.4 7.2 88 191-278 534-645 (715)
65 3ewn_A THIJ/PFPI family protei 96.4 0.007 2.4E-07 54.1 7.4 85 192-277 24-133 (253)
66 3er6_A Putative transcriptiona 96.3 0.0047 1.6E-07 53.3 5.5 46 232-277 74-124 (209)
67 1n57_A Chaperone HSP31, protei 96.0 0.0043 1.5E-07 56.5 3.8 47 231-277 144-194 (291)
68 3noq_A THIJ/PFPI family protei 95.7 0.011 3.9E-07 51.8 5.0 46 232-277 65-113 (231)
69 3mgk_A Intracellular protease/ 94.9 0.011 3.8E-07 51.0 2.5 46 232-277 65-113 (211)
70 3bhn_A THIJ/PFPI domain protei 94.4 0.027 9.3E-07 49.7 3.7 83 191-277 20-128 (236)
71 4gdh_A DJ-1, uncharacterized p 94.1 0.084 2.9E-06 44.8 6.2 83 192-274 5-120 (194)
72 3en0_A Cyanophycinase; serine 87.5 0.63 2.2E-05 42.4 5.1 82 192-275 57-159 (291)
73 2gk3_A Putative cytoplasmic pr 85.2 1.5 5.2E-05 38.7 6.2 64 202-267 42-124 (256)
74 2r47_A Uncharacterized protein 83.4 0.23 7.9E-06 41.6 0.1 39 231-269 83-125 (157)
75 3r2g_A Inosine 5'-monophosphat 83.3 8.1 0.00028 36.1 10.7 88 192-279 113-221 (361)
76 3rht_A (gatase1)-like protein; 71.0 14 0.00049 32.8 8.1 64 192-259 5-76 (259)
77 1z0s_A Probable inorganic poly 69.7 4.7 0.00016 36.4 4.6 71 191-271 29-101 (278)
78 1qkk_A DCTD, C4-dicarboxylate 68.0 17 0.00059 27.6 7.2 77 191-268 3-82 (155)
79 3eag_A UDP-N-acetylmuramate:L- 67.9 38 0.0013 30.3 10.5 31 191-221 4-36 (326)
80 2rdm_A Response regulator rece 66.4 26 0.00087 25.5 7.6 76 191-268 5-86 (132)
81 3eod_A Protein HNR; response r 65.5 30 0.001 25.2 7.9 77 190-268 6-86 (130)
82 3kbq_A Protein TA0487; structu 65.0 19 0.00065 30.1 7.2 51 191-243 3-73 (172)
83 1t0b_A THUA-like protein; treh 63.4 21 0.00073 31.3 7.6 63 205-270 37-106 (252)
84 2qxy_A Response regulator; reg 61.9 12 0.00041 28.0 5.0 75 191-268 4-82 (142)
85 4hv4_A UDP-N-acetylmuramate--L 61.2 22 0.00074 34.1 7.8 52 191-242 22-91 (494)
86 2pln_A HP1043, response regula 60.9 25 0.00085 26.0 6.7 73 190-268 17-93 (137)
87 3g1w_A Sugar ABC transporter; 59.7 47 0.0016 28.1 9.1 71 192-267 5-92 (305)
88 3h5i_A Response regulator/sens 58.5 41 0.0014 25.0 7.6 75 191-268 5-85 (140)
89 2yxb_A Coenzyme B12-dependent 58.4 19 0.00066 29.2 6.0 75 191-265 18-104 (161)
90 2an1_A Putative kinase; struct 58.0 4.3 0.00015 36.0 2.0 63 202-271 23-97 (292)
91 3l49_A ABC sugar (ribose) tran 57.5 34 0.0012 28.8 7.7 60 203-267 25-92 (291)
92 2rjn_A Response regulator rece 57.2 31 0.0011 26.1 6.8 76 191-268 7-86 (154)
93 3o1i_D Periplasmic protein TOR 56.9 41 0.0014 28.4 8.2 60 203-267 25-93 (304)
94 3rot_A ABC sugar transporter, 56.7 31 0.0011 29.4 7.4 60 203-267 23-92 (297)
95 2a6a_A Hypothetical protein TM 56.3 6.1 0.00021 34.2 2.7 44 232-276 66-111 (218)
96 2fz5_A Flavodoxin; alpha/beta 55.7 24 0.00083 26.5 5.9 60 205-267 20-86 (137)
97 3cs3_A Sugar-binding transcrip 55.4 24 0.00082 29.8 6.4 58 203-267 28-86 (277)
98 2qr3_A Two-component system re 54.9 24 0.00084 25.9 5.7 77 192-268 4-87 (140)
99 3bbl_A Regulatory protein of L 54.5 51 0.0017 27.9 8.4 58 203-267 28-93 (287)
100 3ff4_A Uncharacterized protein 54.3 58 0.002 25.3 8.0 29 192-220 5-38 (122)
101 3cg0_A Response regulator rece 54.1 44 0.0015 24.4 7.1 76 190-268 8-89 (140)
102 2fn9_A Ribose ABC transporter, 53.7 58 0.002 27.3 8.6 60 203-267 22-89 (290)
103 2zki_A 199AA long hypothetical 53.7 23 0.00078 28.8 5.8 29 192-221 5-40 (199)
104 1u0t_A Inorganic polyphosphate 53.4 10 0.00035 34.1 3.8 63 203-271 23-109 (307)
105 2i2x_B MTAC, methyltransferase 53.4 36 0.0012 29.7 7.3 51 191-241 123-183 (258)
106 3jy6_A Transcriptional regulat 52.8 55 0.0019 27.4 8.3 57 203-267 27-91 (276)
107 3k4h_A Putative transcriptiona 52.8 43 0.0015 28.2 7.6 58 203-267 33-98 (292)
108 3tb6_A Arabinose metabolism tr 52.5 56 0.0019 27.4 8.3 62 203-267 35-105 (298)
109 3jte_A Response regulator rece 52.4 43 0.0015 24.7 6.8 75 192-268 4-84 (143)
110 2j48_A Two-component sensor ki 52.1 32 0.0011 24.0 5.7 74 192-267 2-81 (119)
111 3l6u_A ABC-type sugar transpor 51.9 45 0.0015 28.0 7.6 60 203-267 28-95 (293)
112 3nbm_A PTS system, lactose-spe 51.8 38 0.0013 26.0 6.3 69 191-267 6-84 (108)
113 2zay_A Response regulator rece 51.8 24 0.00081 26.4 5.2 77 190-268 7-89 (147)
114 2c6q_A GMP reductase 2; TIM ba 51.7 35 0.0012 31.4 7.2 87 192-279 133-245 (351)
115 3f6c_A Positive transcription 50.9 67 0.0023 23.2 7.6 75 192-268 2-81 (134)
116 1ehs_A STB, heat-stable entero 50.7 2.7 9.2E-05 27.3 -0.4 17 263-279 31-47 (48)
117 3grc_A Sensor protein, kinase; 49.5 45 0.0016 24.5 6.5 77 191-269 6-88 (140)
118 3hly_A Flavodoxin-like domain; 48.9 45 0.0015 26.5 6.7 35 204-238 20-57 (161)
119 3r6m_A YEAZ, resuscitation pro 48.8 7.9 0.00027 33.5 2.1 38 232-269 56-95 (213)
120 4dad_A Putative pilus assembly 48.2 40 0.0014 25.1 6.0 77 190-268 19-102 (146)
121 3uug_A Multiple sugar-binding 48.1 52 0.0018 28.3 7.5 60 203-267 23-90 (330)
122 3iwt_A 178AA long hypothetical 47.7 41 0.0014 27.3 6.4 53 191-243 15-92 (178)
123 2fep_A Catabolite control prot 47.6 85 0.0029 26.5 8.7 58 203-267 36-101 (289)
124 2a5l_A Trp repressor binding p 47.5 52 0.0018 26.4 7.0 31 192-222 6-43 (200)
125 3hzh_A Chemotaxis response reg 47.5 52 0.0018 25.0 6.7 77 190-268 35-118 (157)
126 3pzy_A MOG; ssgcid, seattle st 47.1 21 0.00072 29.2 4.4 52 191-243 7-77 (164)
127 1k68_A Phytochrome response re 47.1 50 0.0017 23.9 6.3 76 191-268 2-92 (140)
128 3lk7_A UDP-N-acetylmuramoylala 46.5 81 0.0028 29.5 9.0 31 191-221 9-40 (451)
129 2ioy_A Periplasmic sugar-bindi 46.2 75 0.0026 26.7 8.1 60 203-267 21-88 (283)
130 3hv2_A Response regulator/HD d 45.6 63 0.0022 24.3 6.9 77 190-268 13-93 (153)
131 1iow_A DD-ligase, DDLB, D-ALA\ 45.3 81 0.0028 26.9 8.3 49 192-240 3-62 (306)
132 3gt7_A Sensor protein; structu 44.4 61 0.0021 24.5 6.7 76 191-268 7-88 (154)
133 3huu_A Transcription regulator 44.4 54 0.0018 28.0 7.0 58 203-267 47-112 (305)
134 3m9w_A D-xylose-binding peripl 44.0 49 0.0017 28.3 6.7 60 203-267 22-89 (313)
135 3hdg_A Uncharacterized protein 43.7 37 0.0013 24.9 5.1 76 191-268 7-86 (137)
136 3pfn_A NAD kinase; structural 43.2 29 0.001 32.4 5.3 73 192-271 39-142 (365)
137 3o74_A Fructose transport syst 43.2 1.2E+02 0.0041 24.9 8.8 39 203-241 22-67 (272)
138 5nul_A Flavodoxin; electron tr 43.0 21 0.00073 27.2 3.7 33 204-238 18-51 (138)
139 2i2c_A Probable inorganic poly 42.9 20 0.00069 31.5 4.0 50 204-271 19-71 (272)
140 3kke_A LACI family transcripti 42.9 1E+02 0.0034 26.3 8.5 59 203-267 35-100 (303)
141 3i42_A Response regulator rece 42.8 44 0.0015 24.1 5.3 76 191-268 3-84 (127)
142 2pbq_A Molybdenum cofactor bio 42.6 74 0.0025 26.1 7.2 51 191-243 5-79 (178)
143 2fvy_A D-galactose-binding per 42.2 1.1E+02 0.0037 25.8 8.5 61 203-268 22-91 (309)
144 2rgy_A Transcriptional regulat 41.9 1E+02 0.0034 26.0 8.3 59 203-267 28-96 (290)
145 3hcw_A Maltose operon transcri 41.9 77 0.0026 26.9 7.6 39 203-241 32-77 (295)
146 4e5v_A Putative THUA-like prot 41.6 1.1E+02 0.0038 27.1 8.7 76 191-270 4-95 (281)
147 3gv0_A Transcriptional regulat 41.6 59 0.002 27.5 6.7 37 204-240 31-74 (288)
148 3c3k_A Alanine racemase; struc 41.6 86 0.003 26.3 7.8 58 203-267 28-92 (285)
149 3ksm_A ABC-type sugar transpor 41.5 65 0.0022 26.6 6.9 60 203-267 20-90 (276)
150 1jcn_A Inosine monophosphate d 41.0 65 0.0022 30.8 7.6 87 192-279 268-380 (514)
151 4fxs_A Inosine-5'-monophosphat 40.8 70 0.0024 30.7 7.7 87 192-279 244-356 (496)
152 2gkg_A Response regulator homo 40.8 40 0.0014 23.9 4.8 74 192-267 6-86 (127)
153 3kht_A Response regulator; PSI 40.6 79 0.0027 23.3 6.6 76 191-268 5-88 (144)
154 1dbq_A Purine repressor; trans 40.5 1E+02 0.0035 25.7 8.1 59 204-267 28-93 (289)
155 4eg0_A D-alanine--D-alanine li 40.5 98 0.0034 27.0 8.2 49 191-239 13-72 (317)
156 3h5o_A Transcriptional regulat 40.2 1E+02 0.0035 26.8 8.2 39 203-241 82-127 (339)
157 3e3m_A Transcriptional regulat 39.7 98 0.0034 27.1 8.1 58 203-267 90-155 (355)
158 3d8u_A PURR transcriptional re 39.6 90 0.0031 25.8 7.5 59 203-267 23-88 (275)
159 3k9c_A Transcriptional regulat 39.6 61 0.0021 27.5 6.5 58 203-267 31-94 (289)
160 3e61_A Putative transcriptiona 39.6 72 0.0025 26.5 6.9 56 203-267 28-92 (277)
161 3lua_A Response regulator rece 39.5 62 0.0021 23.8 5.9 76 191-268 4-88 (140)
162 1y5e_A Molybdenum cofactor bio 39.4 78 0.0027 25.6 6.8 51 191-243 13-83 (169)
163 2vk2_A YTFQ, ABC transporter p 39.4 96 0.0033 26.3 7.8 60 203-267 22-89 (306)
164 3egc_A Putative ribose operon 39.2 53 0.0018 27.7 6.0 39 203-241 28-73 (291)
165 3cnb_A DNA-binding response re 39.2 58 0.002 23.8 5.6 76 191-268 8-91 (143)
166 1ydg_A Trp repressor binding p 39.1 54 0.0018 26.8 5.9 31 191-221 6-43 (211)
167 3qk7_A Transcriptional regulat 38.6 1.1E+02 0.0039 25.7 8.1 58 203-267 30-94 (294)
168 3cg4_A Response regulator rece 38.5 53 0.0018 24.1 5.3 76 191-268 7-88 (142)
169 2b4a_A BH3024; flavodoxin-like 38.5 57 0.0019 23.9 5.5 77 190-268 14-95 (138)
170 3usb_A Inosine-5'-monophosphat 38.2 87 0.003 30.2 8.0 89 191-279 268-381 (511)
171 3ffs_A Inosine-5-monophosphate 37.6 90 0.0031 29.4 7.8 87 192-279 157-268 (400)
172 8abp_A L-arabinose-binding pro 37.4 61 0.0021 27.4 6.1 59 203-267 22-88 (306)
173 1f4p_A Flavodoxin; electron tr 37.3 33 0.0011 26.3 4.0 63 205-270 21-93 (147)
174 2gel_A Putative GRAM negative 37.1 32 0.0011 29.6 4.3 38 232-269 55-94 (231)
175 1y80_A Predicted cobalamin bin 37.0 25 0.00085 29.4 3.4 50 192-241 89-148 (210)
176 1mkz_A Molybdenum cofactor bio 36.9 96 0.0033 25.2 7.0 51 191-243 10-80 (172)
177 2dri_A D-ribose-binding protei 36.3 86 0.0029 26.1 6.8 60 203-267 21-88 (271)
178 2o20_A Catabolite control prot 36.0 1.7E+02 0.0057 25.2 8.9 39 203-241 83-128 (332)
179 3o9z_A Lipopolysaccaride biosy 35.3 1.2E+02 0.0042 26.7 8.0 29 191-219 3-33 (312)
180 1vi6_A 30S ribosomal protein S 35.3 1.6E+02 0.0054 25.3 8.3 70 192-268 69-145 (208)
181 3to5_A CHEY homolog; alpha(5)b 35.0 77 0.0026 24.6 5.9 77 190-268 11-94 (134)
182 3kjx_A Transcriptional regulat 34.8 99 0.0034 26.9 7.2 58 203-267 88-153 (344)
183 1k66_A Phytochrome response re 34.2 56 0.0019 24.0 4.8 77 190-268 5-99 (149)
184 3lte_A Response regulator; str 34.0 46 0.0016 24.1 4.2 49 191-239 6-57 (132)
185 3brq_A HTH-type transcriptiona 33.9 1.4E+02 0.0047 24.8 7.8 60 203-267 41-107 (296)
186 2zkq_b 40S ribosomal protein S 33.8 1.3E+02 0.0046 27.2 7.9 69 193-268 73-148 (295)
187 2qvg_A Two component response 33.5 46 0.0016 24.5 4.2 76 191-268 7-96 (143)
188 3bch_A 40S ribosomal protein S 33.3 1.1E+02 0.0038 27.1 7.2 70 192-268 105-181 (253)
189 1tjy_A Sugar transport protein 32.9 90 0.0031 26.9 6.6 60 203-267 23-91 (316)
190 2h3h_A Sugar ABC transporter, 32.9 1.3E+02 0.0044 25.6 7.6 60 203-267 20-88 (313)
191 2x7x_A Sensor protein; transfe 32.9 1.3E+02 0.0046 25.8 7.7 58 205-267 27-93 (325)
192 3oa2_A WBPB; oxidoreductase, s 32.5 78 0.0027 28.1 6.2 29 191-219 3-33 (318)
193 4a1y_A Myelin P2 protein; tran 32.1 12 0.0004 29.9 0.5 26 97-126 14-39 (133)
194 3hn7_A UDP-N-acetylmuramate-L- 32.0 92 0.0032 29.9 7.0 52 191-242 19-90 (524)
195 2is8_A Molybdopterin biosynthe 32.0 66 0.0022 26.0 5.1 45 204-248 25-79 (164)
196 2hsg_A Glucose-resistance amyl 31.8 89 0.0031 27.0 6.4 58 203-267 80-145 (332)
197 2iks_A DNA-binding transcripti 31.5 1.3E+02 0.0046 25.2 7.3 39 203-241 40-85 (293)
198 1jlj_A Gephyrin; globular alph 31.3 1.4E+02 0.0049 24.7 7.3 56 191-248 14-95 (189)
199 3h75_A Periplasmic sugar-bindi 31.3 1E+02 0.0035 26.8 6.7 71 192-268 4-93 (350)
200 3clk_A Transcription regulator 31.0 96 0.0033 26.0 6.3 39 203-241 28-74 (290)
201 3bil_A Probable LACI-family tr 31.0 1E+02 0.0034 27.1 6.6 58 203-267 86-151 (348)
202 2h0a_A TTHA0807, transcription 30.8 61 0.0021 26.9 4.9 39 203-241 19-64 (276)
203 1ypf_A GMP reductase; GUAC, pu 30.7 49 0.0017 30.0 4.5 77 202-279 136-232 (336)
204 1qpz_A PURA, protein (purine n 30.7 1.6E+02 0.0056 25.4 8.0 38 203-240 78-122 (340)
205 1jx6_A LUXP protein; protein-l 30.7 1.6E+02 0.0054 25.4 7.8 60 203-267 64-134 (342)
206 1b56_A Fatty acid binding prot 30.7 18 0.0006 28.9 1.3 26 97-126 15-40 (135)
207 3heb_A Response regulator rece 30.7 94 0.0032 23.2 5.6 76 191-268 4-96 (152)
208 1ccw_A Protein (glutamate muta 30.5 57 0.0019 25.5 4.4 60 205-264 23-88 (137)
209 1gud_A ALBP, D-allose-binding 30.5 1.2E+02 0.0042 25.4 7.0 60 203-267 21-90 (288)
210 3fni_A Putative diflavin flavo 30.4 73 0.0025 25.3 5.1 47 192-238 5-62 (159)
211 1di6_A MOGA, molybdenum cofact 30.0 52 0.0018 27.7 4.3 45 204-248 27-83 (195)
212 2dc1_A L-aspartate dehydrogena 29.9 2.3E+02 0.0078 23.6 8.5 51 192-242 1-60 (236)
213 3khj_A Inosine-5-monophosphate 29.9 1.1E+02 0.0038 28.1 6.9 87 192-279 118-229 (361)
214 3soz_A ORF 245 protein, cytopl 29.8 1E+02 0.0036 26.9 6.4 54 204-259 37-108 (248)
215 4avf_A Inosine-5'-monophosphat 29.2 1.6E+02 0.0053 28.2 8.0 87 192-279 242-354 (490)
216 3nhm_A Response regulator; pro 29.2 1.6E+02 0.0054 21.1 6.6 76 191-268 4-84 (133)
217 1fdq_A Fatty acid-binding prot 29.2 16 0.00056 28.9 0.9 26 97-126 12-37 (131)
218 3snk_A Response regulator CHEY 28.6 68 0.0023 23.4 4.4 76 191-268 14-94 (135)
219 3dbi_A Sugar-binding transcrip 28.6 1.7E+02 0.0056 25.3 7.6 39 203-241 83-128 (338)
220 3gbv_A Putative LACI-family tr 28.5 82 0.0028 26.4 5.4 60 203-267 29-100 (304)
221 3uhf_A Glutamate racemase; str 28.5 1.9E+02 0.0065 25.6 8.0 79 191-275 24-125 (274)
222 2vyc_A Biodegradative arginine 28.4 71 0.0024 32.3 5.7 75 192-268 1-92 (755)
223 3eqz_A Response regulator; str 28.0 63 0.0021 23.3 4.0 75 192-268 4-81 (135)
224 2ark_A Flavodoxin; FMN, struct 27.7 55 0.0019 26.5 4.0 75 192-269 5-96 (188)
225 2ayx_A Sensor kinase protein R 27.5 2.2E+02 0.0075 23.8 8.0 77 190-268 128-208 (254)
226 2nli_A Lactate oxidase; flavoe 27.5 1.2E+02 0.0042 27.8 6.8 76 198-274 213-300 (368)
227 3vg7_A Fatty acid-binding prot 27.1 14 0.00048 29.4 0.2 26 97-126 14-39 (132)
228 2p2s_A Putative oxidoreductase 26.9 1.7E+02 0.0058 25.7 7.4 49 191-239 4-73 (336)
229 3ppt_A Sodium-calcium exchange 26.8 17 0.00057 29.0 0.5 26 97-126 12-37 (133)
230 3h14_A Aminotransferase, class 26.6 3.2E+02 0.011 23.8 9.3 53 192-246 116-174 (391)
231 3kp1_E D-ornithine aminomutase 26.4 15 0.0005 29.3 0.1 22 111-132 57-78 (121)
232 4g65_A TRK system potassium up 26.4 24 0.00083 33.6 1.7 51 191-242 3-55 (461)
233 1crb_A Cellular retinol bindin 26.3 18 0.00062 28.7 0.7 26 97-126 12-37 (134)
234 1o8v_A Fatty acid binding prot 26.0 18 0.0006 28.8 0.5 26 97-126 13-38 (134)
235 2qu7_A Putative transcriptiona 25.9 1E+02 0.0035 25.7 5.6 12 206-217 56-67 (288)
236 2g2c_A Putative molybdenum cof 25.9 44 0.0015 27.2 3.0 43 204-248 29-86 (167)
237 2a0a_A DER F 13; beta barrel, 25.6 18 0.00062 28.6 0.6 25 97-125 12-36 (131)
238 3out_A Glutamate racemase; str 25.5 2E+02 0.0068 25.2 7.5 72 192-268 8-101 (268)
239 3brs_A Periplasmic binding pro 25.3 87 0.003 26.1 4.9 59 204-267 28-96 (289)
240 2rjo_A Twin-arginine transloca 25.1 1.2E+02 0.004 26.2 5.9 60 203-267 25-94 (332)
241 1mvg_A Liver basic fatty acid 25.1 18 0.00061 28.5 0.4 25 97-125 10-34 (125)
242 1dcf_A ETR1 protein; beta-alph 25.0 88 0.003 22.7 4.4 48 191-238 7-56 (136)
243 2c52_B Nuclear receptor coacti 24.9 18 0.00063 25.1 0.4 21 101-122 17-37 (59)
244 3gl9_A Response regulator; bet 24.8 92 0.0031 22.4 4.5 75 192-268 3-83 (122)
245 3p6d_A Fatty acid-binding prot 24.8 19 0.00065 28.9 0.5 25 97-125 20-44 (139)
246 3rsw_A Fatty acid-binding prot 24.7 22 0.00075 29.4 0.9 25 97-125 38-62 (158)
247 3f6p_A Transcriptional regulat 24.7 92 0.0031 22.2 4.4 73 192-268 3-80 (120)
248 3d02_A Putative LACI-type tran 24.6 2.2E+02 0.0074 23.8 7.4 61 203-268 24-93 (303)
249 1b5p_A Protein (aspartate amin 24.5 3.5E+02 0.012 23.6 9.4 53 193-247 117-178 (385)
250 2qv7_A Diacylglycerol kinase D 24.5 87 0.003 28.0 5.0 61 204-270 46-115 (337)
251 3q6l_A Fatty acid-binding prot 24.4 19 0.00067 29.5 0.5 27 96-126 32-58 (152)
252 3j20_B 30S ribosomal protein S 24.4 95 0.0033 26.5 5.0 30 232-268 111-141 (202)
253 3eul_A Possible nitrate/nitrit 24.3 2E+02 0.0069 21.2 6.5 77 190-268 14-96 (152)
254 3iz6_A 40S ribosomal protein S 24.2 2.5E+02 0.0084 25.6 7.9 31 231-268 121-152 (305)
255 1mdc_A Insect fatty acid bindi 24.2 21 0.00073 28.3 0.7 26 97-126 12-37 (132)
256 1ggl_A Protein (cellular retin 24.0 18 0.00061 28.8 0.2 26 97-126 12-37 (134)
257 3elx_A Ileal bIle acid-binding 24.0 16 0.00053 29.5 -0.1 26 96-125 13-38 (138)
258 3r5x_A D-alanine--D-alanine li 23.9 57 0.0019 28.2 3.5 49 191-239 3-62 (307)
259 1uuy_A CNX1, molybdopterin bio 23.7 1.8E+02 0.006 23.4 6.3 53 191-243 5-82 (167)
260 1zh8_A Oxidoreductase; TM0312, 23.6 1.6E+02 0.0053 26.2 6.5 52 189-240 16-90 (340)
261 3b6i_A Flavoprotein WRBA; flav 23.5 1.8E+02 0.006 23.1 6.3 31 192-222 2-40 (198)
262 3ilh_A Two component response 23.5 2.1E+02 0.007 20.6 6.3 77 190-268 8-99 (146)
263 1eep_A Inosine 5'-monophosphat 23.5 99 0.0034 28.5 5.3 82 192-274 166-272 (404)
264 2g7b_A Cellular retinoic acid- 23.5 25 0.00086 28.0 1.0 23 97-123 11-33 (137)
265 3kcn_A Adenylate cyclase homol 23.4 1.9E+02 0.0065 21.4 6.2 75 191-268 4-83 (151)
266 4ew6_A D-galactose-1-dehydroge 23.4 1.4E+02 0.0048 26.5 6.2 50 190-239 24-88 (330)
267 1ftp_A Muscle fatty acid bindi 23.4 18 0.00063 28.7 0.2 25 97-125 13-37 (133)
268 3u5c_A 40S ribosomal protein S 23.2 3E+02 0.01 24.3 8.1 70 192-268 71-147 (252)
269 2pl1_A Transcriptional regulat 23.2 1.9E+02 0.0066 20.1 7.0 75 192-268 1-79 (121)
270 1lpj_A Retinol-binding protein 23.2 16 0.00055 29.0 -0.2 26 97-126 12-37 (133)
271 1kgs_A DRRD, DNA binding respo 23.0 2.2E+02 0.0076 22.6 6.9 75 192-268 3-81 (225)
272 3hs3_A Ribose operon repressor 23.0 1.1E+02 0.0039 25.5 5.3 38 203-240 30-75 (277)
273 2lpm_A Two-component response 23.0 39 0.0013 26.1 2.0 72 190-265 7-83 (123)
274 4e7p_A Response regulator; DNA 22.9 1.5E+02 0.0052 21.9 5.5 77 190-268 19-101 (150)
275 2f00_A UDP-N-acetylmuramate--L 22.9 2.8E+02 0.0096 26.0 8.5 30 192-221 20-51 (491)
276 3rc1_A Sugar 3-ketoreductase; 22.9 2.2E+02 0.0076 25.3 7.5 50 190-239 26-96 (350)
277 2qo4_A Liver-basic fatty acid 22.7 17 0.00058 28.6 -0.1 25 97-125 11-35 (126)
278 3m6m_D Sensory/regulatory prot 22.7 73 0.0025 23.8 3.6 77 190-268 13-97 (143)
279 3t6k_A Response regulator rece 22.7 1E+02 0.0035 22.6 4.4 76 191-268 4-85 (136)
280 1srr_A SPO0F, sporulation resp 22.6 2E+02 0.007 20.1 6.2 75 192-268 4-82 (124)
281 3dzz_A Putative pyridoxal 5'-p 22.6 1.8E+02 0.0063 25.2 6.7 65 193-259 111-189 (391)
282 2rcq_A CRBP-II, retinol-bindin 22.6 19 0.00066 28.9 0.2 25 97-125 16-40 (141)
283 1vyf_A SM14, 14 kDa fatty acid 22.4 20 0.00067 28.6 0.2 25 97-125 14-38 (135)
284 3sgz_A Hydroxyacid oxidase 2; 22.2 1.5E+02 0.0051 27.4 6.2 76 198-274 201-288 (352)
285 3dmo_A Cytidine deaminase; str 22.1 59 0.002 26.2 3.0 22 2-23 28-51 (138)
286 3u3x_A Oxidoreductase; structu 22.1 2.9E+02 0.0098 24.7 8.1 49 191-239 26-95 (361)
287 1p6p_A Fatty acid-binding prot 22.1 18 0.0006 28.5 -0.2 25 97-125 10-34 (125)
288 1ys7_A Transcriptional regulat 22.0 2.4E+02 0.0081 22.5 6.9 75 191-267 7-85 (233)
289 3bbn_B Ribosomal protein S2; s 22.0 66 0.0022 28.1 3.5 30 232-268 157-187 (231)
290 1mvo_A PHOP response regulator 21.7 2.2E+02 0.0077 20.2 6.6 75 192-268 4-82 (136)
291 1wcw_A Uroporphyrinogen III sy 21.6 1.9E+02 0.0065 24.3 6.5 49 191-239 8-66 (261)
292 3mm4_A Histidine kinase homolo 21.6 84 0.0029 25.4 4.0 77 190-268 60-158 (206)
293 2vqe_B 30S ribosomal protein S 21.6 75 0.0026 28.2 3.8 31 231-268 157-188 (256)
294 1ifc_A Intestinal fatty acid b 21.5 18 0.00062 28.7 -0.2 25 97-125 11-35 (132)
295 3e18_A Oxidoreductase; dehydro 21.5 2.6E+02 0.009 24.9 7.7 49 191-239 5-72 (359)
296 3kc2_A Uncharacterized protein 21.0 4.6E+02 0.016 23.6 10.1 82 118-219 34-118 (352)
297 2j01_J 50S ribosomal protein L 21.0 88 0.003 25.7 3.9 77 193-273 23-116 (173)
298 1b93_A Protein (methylglyoxal 20.9 1.8E+02 0.0063 23.6 5.8 60 206-265 49-117 (152)
299 3v5n_A Oxidoreductase; structu 20.8 2.5E+02 0.0086 25.7 7.6 28 190-217 36-68 (417)
300 1eal_A Gastrotropin, ileal lip 20.8 18 0.00063 28.4 -0.3 25 97-125 10-34 (127)
301 1eaq_A RUNT-related transcript 20.7 25 0.00086 28.3 0.5 22 90-114 29-50 (140)
302 3f6r_A Flavodoxin; FMN binding 20.6 1.7E+02 0.0059 22.1 5.5 33 205-238 22-55 (148)
303 3ezx_A MMCP 1, monomethylamine 20.4 2.2E+02 0.0076 23.9 6.5 47 192-238 93-149 (215)
304 2f73_A L-FABP, fatty acid-bind 20.3 24 0.00081 28.8 0.2 25 97-125 33-57 (149)
305 1jr2_A Uroporphyrinogen-III sy 20.1 2.1E+02 0.0073 24.6 6.6 50 190-239 20-83 (286)
No 1
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=100.00 E-value=3.4e-98 Score=716.24 Aligned_cols=271 Identities=47% Similarity=0.847 Sum_probs=242.4
Q ss_pred ceeEEEecCCCEEEEEeeCCCcceeeeEEEeecCCcccccccCCCCCCcEEEeccCcccccCCCCCccccccceeeEEEE
Q 039151 6 ANARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVI 85 (279)
Q Consensus 6 ~~a~L~LedG~~f~G~~fG~~~~~~GEvVFnT~mtGYqE~lTDPSY~gQiv~~TyP~IGNyGi~~~~~Es~~~~~~g~iv 85 (279)
++|+|+|||||+|+|++||++++++||||||||||||||+||||||+|||||||||||||||||++|+||++||++|+||
T Consensus 2 ~~~~l~ledG~~~~g~~~g~~~~~~gEvvf~T~mtGYqe~ltDpsy~gqi~~~t~P~iGn~Gv~~~d~es~~~~~~g~vv 81 (379)
T 1a9x_B 2 KSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVI 81 (379)
T ss_dssp CEEEEEETTSCEEEEEECSCSEEEEEEEEEECCSSCHHHHHTCGGGBTEEEEECSSBCCTTCCCGGGCSSSSCCBSEEEC
T ss_pred CCeEEEECCCCEEEEEEeCCCCCEEEEEEEeCCCCcCCccccCcccccceeEEcCCCccEEccCchhhccccceEEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccccCCCHHHHHHHcCceEEecCchHHHHHHhhhcCceeEEEecCCCCChHHHHHhhcCC-CCCCCCccccc
Q 039151 86 RSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDV 164 (279)
Q Consensus 86 ~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~~~-~~~~~~lv~~v 164 (279)
||+|..|||||+++||++||+++|||||+||||||||||||++|+|+|+|++++..+.+++.+.++++ ++++.|||++|
T Consensus 82 ~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR~lt~~iR~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v 161 (379)
T 1a9x_B 82 RDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEV 161 (379)
T ss_dssp SBCCSCCCCTTCCSCHHHHHHHTTCEEEESSCHHHHHHHHHHHCCEEEEEEESSSCCHHHHHHHHHHCCCSTTCBCHHHH
T ss_pred ccCCCCCCcccccCCHHHHHHHCCCccccCCCHHHHHHHHHhcCCeeEEEecCCCCCHHHHHHHHHhCCCccccCcccee
Confidence 99999999999999999999999999999999999999999999999999885222334455555544 78889999999
Q ss_pred ccCCeEEecCCCCCCCCCCcc--CCCCC---ccEEEEEEcCchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEc
Q 039151 165 SGKEPFEWVESTKPDWDFNTH--ERNSK---TYRVIAYDFGIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFS 239 (279)
Q Consensus 165 s~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLS 239 (279)
||+++|.|.+. .|.+... ..... ++||+++|||+++||+|+|.++|++++++|++.+++++...++||||||
T Consensus 162 s~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~V~viD~G~k~ni~r~L~~~G~~v~vvp~~~~~e~i~~~~~DGliLs 238 (379)
T 1a9x_B 162 TTAEAYSWTQG---SWTLTGGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLS 238 (379)
T ss_dssp SCSSCEEECCC---CCBTTTBSCCCCCGGGCCEEEEEEESSCCHHHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEEC
T ss_pred CCCCCEEeCCC---CcccccccccccccccCCCEEEEEECCChHHHHHHHHHCCCEEEEEeccCCHHHHhhcCCCEEEEe
Confidence 99999998542 2322110 00001 4799999999999999999999999999999888888876789999999
Q ss_pred CCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151 240 NGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 240 gGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG 279 (279)
||||+|.+....++.||+++ .++|+||||||||||+.|+|
T Consensus 239 GGPgdp~~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A~G 279 (379)
T 1a9x_B 239 NGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASG 279 (379)
T ss_dssp CCSBCSTTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCEEEECchHHHHHHHhC
Confidence 99999998888999999999 58999999999999999997
No 2
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.97 E-value=6.9e-33 Score=275.19 Aligned_cols=199 Identities=16% Similarity=0.121 Sum_probs=155.6
Q ss_pred EEEeccCcccccCCCC--------CccccccceeeEEEEeccCCCCCccccCCCHHHHHHHcCceEEecCchHH-HHHHh
Q 039151 55 FVLMTNPHIGNTGVNF--------DDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA-ITRRL 125 (279)
Q Consensus 55 iv~~TyP~IGNyGi~~--------~~~Es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRa-Lt~~i 125 (279)
|-+...|.|+++|-.. +++||.+||+.|+|||+.++.|||||++.||..||++++||+|.|||||+ |+++|
T Consensus 172 ~h~~~~p~~~~~ge~ktkptq~sv~~l~s~gi~pd~lv~R~~~~~~~~~r~kisL~~~v~~~~Vi~~~dvdt~y~lp~~l 251 (545)
T 1s1m_A 172 MHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLL 251 (545)
T ss_dssp EEEEECCEETTTTEECCHHHHHHHHHHHTTTCCCSEEEEEESSCCCHHHHHHHHHTTCCCSSCEEEEECCSCGGGHHHHH
T ss_pred EEEeCcccccCCCCcCCCCCcCCHHHHhCCCCccCEEEEeCCCCCCchhhccCChhhCccccCceecCCCChHHHHHHHH
Confidence 5677899999999654 46899999999999999999999999999999999999999999999998 99999
Q ss_pred hhcCceeEEEecCCCCChHHHHHhhcCCCCCCCCcccccccCCeEEecCCCCCCCCCCccCCCCCccEEEEEEcCchHHH
Q 039151 126 RQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYDFGIKHNI 205 (279)
Q Consensus 126 R~~G~m~g~i~~~~~~~~~~~~~~~~~~~~~~~~lv~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G~k~~I 205 (279)
|++|.|+++|.....+... ..+..| .++|++|++++++..-. -.+..|+++| .+.|+
T Consensus 252 r~~G~~~~ii~~~~l~~~~---~~l~~w----~~lv~~v~~~~~~v~i~--------------~vGkyv~l~D--~y~Si 308 (545)
T 1s1m_A 252 KSQGLDDYICKRFSLNCPE---ANLSEW----EQVIFEEANPVSEVTIG--------------MVGKYIELPD--AYKSV 308 (545)
T ss_dssp HHTTHHHHHHHHTTCCCCC---CCCHHH----HHHHHHHHCCSEEEEEE--------------EEESSCSSGG--GGHHH
T ss_pred HHcCChhhhhhhCCCCchh---HHHHHH----HHHHHhccCCCCeEEeC--------------CcCCeEEEEE--HHHHH
Confidence 9999999998653321000 001111 26788888887665321 0123466667 57899
Q ss_pred HHHHHHCCC----eEEEEcCCCChhhhh------ccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHHH
Q 039151 206 LRRLASYGC----QIIVVPSTWPASETL------KLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLL 274 (279)
Q Consensus 206 ~r~L~~~G~----~v~vvp~~~~~~~i~------~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLL 274 (279)
.++|..+|+ ++.+++.+ .+++. ..++||||||||||+|.. ...++.++++. .++|+||||||||+|
T Consensus 309 ~~aL~~~G~~~~~~V~i~~~d--~e~i~~~~~~~l~~~DGIilsGGpg~~~~-~g~~~~i~~a~~~~~PiLGIClG~Qll 385 (545)
T 1s1m_A 309 IEALKHGGLKNRVSVNIKLID--SQDVETRGVEILKGLDAILVPGGFGYRGV-EGMITTARFARENNIPYLGICLGMQVA 385 (545)
T ss_dssp HHHHHHHHHHHTEEEEEEEEE--HHHHHHHCTTTTTTCSEEEECCCCSSTTH-HHHHHHHHHHHHTTCCEEEETHHHHHH
T ss_pred HHHHHHhCcccCCeEEEccCC--HHHhhhhhhhhhhcCCEEEECCCCCCccc-hhhHHHHHHHHHCCCcEEEECChHHHH
Confidence 999988876 44555443 23321 247999999999999874 56788899888 689999999999999
Q ss_pred HHHcC
Q 039151 275 GQALG 279 (279)
Q Consensus 275 a~AlG 279 (279)
+.|+|
T Consensus 386 ~va~G 390 (545)
T 1s1m_A 386 LIDYA 390 (545)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99886
No 3
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.95 E-value=7.8e-31 Score=260.69 Aligned_cols=200 Identities=16% Similarity=0.080 Sum_probs=147.7
Q ss_pred EEEeccCcccccCCCC--------CccccccceeeEEEEeccCCCCCccccCCCHHHHHHHcCceEEecCchHH-HHHHh
Q 039151 55 FVLMTNPHIGNTGVNF--------DDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRA-ITRRL 125 (279)
Q Consensus 55 iv~~TyP~IGNyGi~~--------~~~Es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRa-Lt~~i 125 (279)
|-+-.-|.|+++|-.. +++||.+|++.|+|||+.++.|||||++.+|..||++++||+|.|||||+ |+++|
T Consensus 183 ~h~~~~p~~~~~~e~ktkptq~sv~~lrs~gi~pd~lvvR~~~~~~~~~r~k~sL~~~v~~~~Vi~~~dvdt~y~lp~~l 262 (550)
T 1vco_A 183 LHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLL 262 (550)
T ss_dssp EEEEECCEETTTTEECCHHHHHHHHHHHHTTCCCSEEEEEESSCCCHHHHHHHHHHHTCCGGGEEEEECCSCTTHHHHHH
T ss_pred EEEeCeecccCCCCcCCCCcchhHHHHhcCCCccCEEEEeCCCCCCcchhcccchhcCCCccCeeecCCCChHHHHHHHH
Confidence 5566779999998765 36899999999999999999999999999999999999999999999999 99999
Q ss_pred hhcCceeEEEecCCCCC-hHHHHHhhcCCCCCCCCcccccccCC-eEEecCCCCCCCCCCccCCCCCccEEEEEEcC--c
Q 039151 126 RQDGSLIGVLSTEESKS-DQELLEMSRSWDIVGIDLISDVSGKE-PFEWVESTKPDWDFNTHERNSKTYRVIAYDFG--I 201 (279)
Q Consensus 126 R~~G~m~g~i~~~~~~~-~~~~~~~~~~~~~~~~~lv~~vs~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~viD~G--~ 201 (279)
|++|.|+++|.....+. .+.+ ..| .+++..+...+ ..... -.+..++++|.. +
T Consensus 263 r~~G~~~~v~~~~~l~~~~~~l----~~w----~~~~~~~~~~~~~v~I~---------------ivgkyv~l~D~y~Sv 319 (550)
T 1vco_A 263 EEQGLGRAVERALGLEAVIPNL----SFW----QEAVRVLKHPERTVKIA---------------IAGKYVKMPDAYLSL 319 (550)
T ss_dssp HHHTHHHHHHHHTTCCCCCCCC----HHH----HHHHHHHHSCSEEEEEE---------------EEESCC---CTTHHH
T ss_pred HHcCChhhhHhhCCCCchhHHH----HHh----HHHHHhhcCCCCceEEc---------------ccCCeEEEEecHHHH
Confidence 99999999886532110 0000 111 01222222111 11110 012357788876 4
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCC------hhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHHH
Q 039151 202 KHNILRRLASYGCQIIVVPSTWP------ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLL 274 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~------~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLL 274 (279)
+.++.+.+.+.|+++.+++.+.+ +++.+ .++||||||||||+|.. ...++.++++. .++|+||||||||+|
T Consensus 320 ~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L-~~~DGIILpGGfGd~~~-~g~i~~ir~a~e~~iPiLGICLGmQlL 397 (550)
T 1vco_A 320 LEALRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGI-EGKVRAAQYARERKIPYLGICLGLQIA 397 (550)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTH-HHHHHHHHHHHHTTCCEEEETHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEEeCccccccchHHHHH-hcCCEEEECCCCCCcch-hhhHHHHHHHHHCCCcEEEECcCHHHH
Confidence 67777788888999998865431 22323 47999999999999964 56788899888 799999999999999
Q ss_pred HHHcC
Q 039151 275 GQALG 279 (279)
Q Consensus 275 a~AlG 279 (279)
+.++|
T Consensus 398 ~~a~G 402 (550)
T 1vco_A 398 VIEFA 402 (550)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99975
No 4
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.79 E-value=2e-20 Score=184.46 Aligned_cols=175 Identities=16% Similarity=0.152 Sum_probs=126.3
Q ss_pred ccccccceeeEEEEeccCCCCCccccCCCHHHHHHHcCceEEecCchHHHH-HHhhhcCceeEEEecCCC----CChHHH
Q 039151 72 DEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGIYDVDTRAIT-RRLRQDGSLIGVLSTEES----KSDQEL 146 (279)
Q Consensus 72 ~~Es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~L~~~~ipgi~gvDTRaLt-~~iR~~G~m~g~i~~~~~----~~~~~~ 146 (279)
+++|.+|++.++|||...+.|+|||++.+|..|+++++|.++.+||||.+| ++||++|.+.-++..-.. .+-.++
T Consensus 199 ~Lrs~GIqPdilvcRs~~~l~~~~r~KiaLfc~V~~~~VI~i~DvdtiY~vpl~L~~qGl~~~~~~~l~l~~~~~~~~~w 278 (535)
T 3nva_A 199 ELRRIGIQPDFIVGRATLPLDDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILESQKLVSKILSRLKLEDRQVDLTDW 278 (535)
T ss_dssp HHHHHTCCCSEEEEEESSCCCHHHHHHHHHHTTCCGGGEEEEECCSCGGGHHHHHHHHTHHHHHHHHTTCCCCCCCCHHH
T ss_pred HHHhCCCCCCEEEEecCCCCCHHHHHhhhhhcCCChhceEecCCCChHHHhHHHHHHCCcHHHHHHHcCCCCCCCCHHHH
Confidence 368999999999999999999999999999999999999999999999999 999999987754321100 000111
Q ss_pred HHhhcCCCCCCCCcccccccCCeEEecCCCCCCCCCCccCCCCCccEEEEEE-c-Cc---hHHHHHHHHH----CCCeEE
Q 039151 147 LEMSRSWDIVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRVIAYD-F-GI---KHNILRRLAS----YGCQII 217 (279)
Q Consensus 147 ~~~~~~~~~~~~~lv~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD-~-G~---k~~I~r~L~~----~G~~v~ 217 (279)
. +++..+... .+....+|+++- | .. ..|+.++|.. .++++.
T Consensus 279 ~-----------~~~~~~~~~-------------------~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~ 328 (535)
T 3nva_A 279 I-----------SFVNNIKGI-------------------NSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPK 328 (535)
T ss_dssp H-----------HHHHHHHTT-------------------TCCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEE
T ss_pred H-----------HHHHHhhcc-------------------CCCCeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeE
Confidence 1 111111100 012346788774 3 22 4566666654 567787
Q ss_pred EEcCCCC---------hhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151 218 VVPSTWP---------ASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 218 vvp~~~~---------~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG 279 (279)
+...+.. .+++ .++|||||+||||++. ....++.++++. .++|+||||+|||+|+.|+|
T Consensus 329 I~wIds~~l~~~~~~~~~~L--~~~DgIIlpGG~G~~~-~~g~i~~ir~a~~~~~PiLGIClG~Qll~va~G 397 (535)
T 3nva_A 329 LIWIESTDLESDTKNLNEIL--GNVNGIIVLPGFGSRG-AEGKIKAIKYAREHNIPFLGICFGFQLSIVEFA 397 (535)
T ss_dssp EEEEEGGGGCCSSSCCTTTT--TSCSEEEECCCCSSTT-HHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHH
T ss_pred EEEecchhccccccchhhhc--cCCCEEEECCCCCCcc-HHHHHHHHHHHHHcCCcEEEECcchhHHHHHhh
Confidence 7643321 1222 3799999999999985 356788899888 69999999999999999986
No 5
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.75 E-value=3.7e-18 Score=147.29 Aligned_cols=88 Identities=28% Similarity=0.552 Sum_probs=71.7
Q ss_pred cEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhc----cCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEe
Q 039151 192 YRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLK----LKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVF 265 (279)
Q Consensus 192 ~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~----~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PIL 265 (279)
++|++||++ ++++|.++|+++|+++++++++.+.+++.+ .+.+++|||||||+|.+.....+.++.+..++|+|
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~Pil 80 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPII 80 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEE
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCEE
Confidence 479999985 589999999999999999998866666532 14557999999999987655555666433689999
Q ss_pred eecHHHHHHHHHcC
Q 039151 266 GICMGHQLLGQALG 279 (279)
Q Consensus 266 GICLGhQLLa~AlG 279 (279)
|||+|||+|+.|+|
T Consensus 81 GIC~G~Qll~~~~G 94 (192)
T 1i1q_B 81 GICLGHQAIVEAYG 94 (192)
T ss_dssp EETHHHHHHHHHTS
T ss_pred EECcChHHHHHHhC
Confidence 99999999999987
No 6
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.72 E-value=3.2e-17 Score=140.70 Aligned_cols=87 Identities=31% Similarity=0.606 Sum_probs=75.1
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
|+|++||+|. ..++.++|++.|+++++++.+.+.+++...++|||||+||| +|.+.....+.++++. .++|+||||
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGIC 79 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGIC 79 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCCHHHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEET
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCCChHHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEEc
Confidence 4699999975 78999999999999999998766667655579999999999 8877555678888775 689999999
Q ss_pred HHHHHHHHHcC
Q 039151 269 MGHQLLGQALG 279 (279)
Q Consensus 269 LGhQLLa~AlG 279 (279)
+|||+|+.|+|
T Consensus 80 ~G~Q~l~~~~g 90 (189)
T 1wl8_A 80 LGHQLIAKFFG 90 (189)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999999987
No 7
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.71 E-value=2.9e-17 Score=142.06 Aligned_cols=86 Identities=28% Similarity=0.538 Sum_probs=71.6
Q ss_pred EEEEEcC--chHHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCC---hHHHHHHHHHHCCCCEeee
Q 039151 194 VIAYDFG--IKHNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAV---PYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 194 I~viD~G--~k~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~---~~~i~~Ir~~~~~~PILGI 267 (279)
|+|||++ ...++.++|++.|+++++++.+ .+.+++...++|||||||||++|.+. ....+.++++..++|+|||
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGI 83 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGV 83 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEE
Confidence 9999985 4788999999999999999976 45556655579999999999998863 2345778874368999999
Q ss_pred cHHHHHHHHHcC
Q 039151 268 CMGHQLLGQALG 279 (279)
Q Consensus 268 CLGhQLLa~AlG 279 (279)
|+|||+|+.++|
T Consensus 84 C~G~QlL~~~~g 95 (195)
T 1qdl_B 84 CLGHQAIGYAFG 95 (195)
T ss_dssp THHHHHHHHHTT
T ss_pred ehHHHHHHHHhC
Confidence 999999999987
No 8
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.66 E-value=2.4e-16 Score=159.53 Aligned_cols=87 Identities=28% Similarity=0.426 Sum_probs=74.3
Q ss_pred CccEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh-----HHHHHHHHHH-CC
Q 039151 190 KTYRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP-----YAVAIVKELL-GK 261 (279)
Q Consensus 190 ~~~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~-----~~i~~Ir~~~-~~ 261 (279)
.+++|++||+| +++++.++|.+.|+++++++++.+.+ + .++||||||||||+|.+.. ...++|++++ .+
T Consensus 445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~~~-~--~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~ 521 (645)
T 3r75_A 445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVD-L--ARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEG 521 (645)
T ss_dssp TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCCCC-G--GGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCccc-c--cCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCC
Confidence 45799999997 58999999999999999999876532 2 4799999999999998764 2456778777 69
Q ss_pred CCEeeecHHHHHHHHHcC
Q 039151 262 VPVFGICMGHQLLGQALG 279 (279)
Q Consensus 262 ~PILGICLGhQLLa~AlG 279 (279)
+|+||||||||+|+.++|
T Consensus 522 iPiLGIClG~QlLa~alG 539 (645)
T 3r75_A 522 KPFMAVCLSHQILNAILG 539 (645)
T ss_dssp CCEEEETHHHHHHHHHTT
T ss_pred CCEEEECHHHHHHHHHhC
Confidence 999999999999999997
No 9
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.65 E-value=2.7e-16 Score=156.72 Aligned_cols=88 Identities=23% Similarity=0.396 Sum_probs=74.2
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh--H-HHHHHHHHH-CCCCEe
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP--Y-AVAIVKELL-GKVPVF 265 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~--~-~i~~Ir~~~-~~~PIL 265 (279)
.+|+|||||. +++|.|.|++.|+.++++|++.+.+++...+||||||||||+++.+.. . ....++.+. .++|+|
T Consensus 8 ~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~PvL 87 (556)
T 3uow_A 8 DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIF 87 (556)
T ss_dssp CEEEEEESSCTTHHHHHHHHHHTTCCEEEEETTCCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCEE
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCCEE
Confidence 5899999984 789999999999999999998888888777899999999999986532 1 123444455 599999
Q ss_pred eecHHHHHHHHHcC
Q 039151 266 GICMGHQLLGQALG 279 (279)
Q Consensus 266 GICLGhQLLa~AlG 279 (279)
|||+|||+|+.++|
T Consensus 88 GIC~G~QlLa~~lG 101 (556)
T 3uow_A 88 GICYGMQEIAVQMN 101 (556)
T ss_dssp EETHHHHHHHHHTT
T ss_pred EECHHHHHHHHHhC
Confidence 99999999999987
No 10
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.65 E-value=7.1e-17 Score=140.44 Aligned_cols=81 Identities=22% Similarity=0.415 Sum_probs=65.0
Q ss_pred EEEEEEcCch--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHH---HHHHHHH-CCCCEee
Q 039151 193 RVIAYDFGIK--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAV---AIVKELL-GKVPVFG 266 (279)
Q Consensus 193 ~I~viD~G~k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i---~~Ir~~~-~~~PILG 266 (279)
+|+|||||++ +||.|+|+++|++++++. +++++. ++|+||| +|||+|.+....+ ..++.+. .++|+||
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~---~~~~l~--~~D~lil-PG~g~~~~~~~~~~~~~~i~~~~~~~~PvlG 77 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISR---DPQVVL--AADKLFL-PGVGTASEAMKNLTERDLIELVKRVEKPLLG 77 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEEC---CHHHHH--HCSEEEE-CCCSCHHHHHHHHHHTTCHHHHHHCCSCEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEEC---CHHHHh--CCCEEEE-CCCCCHHHHHHHHHhcChHHHHHHcCCCEEE
Confidence 6999999985 899999999999999874 356664 5899999 5888886543222 2456666 6999999
Q ss_pred ecHHHHHHHHHcC
Q 039151 267 ICMGHQLLGQALG 279 (279)
Q Consensus 267 ICLGhQLLa~AlG 279 (279)
||+|||+|+.++|
T Consensus 78 IClG~QlL~~~~g 90 (211)
T 4gud_A 78 ICLGMQLLGKLSE 90 (211)
T ss_dssp ETHHHHTTSSEEC
T ss_pred EchhHhHHHHHhC
Confidence 9999999998765
No 11
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.65 E-value=8.7e-17 Score=142.26 Aligned_cols=87 Identities=26% Similarity=0.334 Sum_probs=64.3
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
.+|++||+|. ..++.++|+++|+++.++|.+.+.+++...++|||||+|||+++.+.. .....+.++ .++|+||||
T Consensus 25 ~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~~~~l~~~~~dglil~Gg~~~~~~~~-~~~~~~~~~~~~~PilGIC 103 (218)
T 2vpi_A 25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAED-APWFDPAIFTIGKPVLGIC 103 (218)
T ss_dssp TCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC----------CCCCCGGGGTSSCCEEEET
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChHHHhhcCCCEEEECCCCccccccc-chhHHHHHHHcCCCEEEEc
Confidence 5899999976 467999999999999999988777777656799999999998875321 111223344 589999999
Q ss_pred HHHHHHHHHcC
Q 039151 269 MGHQLLGQALG 279 (279)
Q Consensus 269 LGhQLLa~AlG 279 (279)
+|||+|+.++|
T Consensus 104 ~G~Qll~~~~G 114 (218)
T 2vpi_A 104 YGMQMMNKVFG 114 (218)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 99999999987
No 12
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.64 E-value=2.6e-16 Score=138.27 Aligned_cols=87 Identities=26% Similarity=0.437 Sum_probs=70.7
Q ss_pred ccEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCC-CCCCCCChHHHHHHHHHH-CCCCEee
Q 039151 191 TYRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNG-PGDPSAVPYAVAIVKELL-GKVPVFG 266 (279)
Q Consensus 191 ~~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgG-PGdp~~~~~~i~~Ir~~~-~~~PILG 266 (279)
.+||+++|++ +..++.++|+++|+++.++|++.+.+++. ++|||||+|| |+++.+........+.+. .++|+||
T Consensus 13 ~~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~l~--~~DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~PiLG 90 (212)
T 2a9v_A 13 MLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILG 90 (212)
T ss_dssp CCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCCCHHHHh--CCCEEEECCCCCCCCcccccchhHHHHHHhCCCCEEE
Confidence 4689999996 47899999999999999999876666664 5999999999 999876422222334444 6899999
Q ss_pred ecHHHHHHHHHcC
Q 039151 267 ICMGHQLLGQALG 279 (279)
Q Consensus 267 ICLGhQLLa~AlG 279 (279)
||+|||+|+.++|
T Consensus 91 IC~G~Qll~~~lG 103 (212)
T 2a9v_A 91 ICVGAQFIALHFG 103 (212)
T ss_dssp ETHHHHHHHHHTT
T ss_pred EChHHHHHHHHhC
Confidence 9999999999987
No 13
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.63 E-value=1.9e-16 Score=156.72 Aligned_cols=87 Identities=26% Similarity=0.486 Sum_probs=68.6
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
.+|+|||||. .++|.|.|++.|+.++++|++.+.+++.+.+||||||||||+++.+. ......+.++ .++|+||||
T Consensus 11 ~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~~~dgIILsGGp~sv~~~-~~~~~~~~~~~~~~PvLGIC 89 (527)
T 3tqi_A 11 HRILILDFGSQYAQLIARRVREIGVYCELMPCDIDEETIRDFNPHGIILSGGPETVTLS-HTLRAPAFIFEIGCPVLGIC 89 (527)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHHTCEEEEEETTCCSSSSTTTCCSEEEECCCCC----------CCCSTTTSSSCEEEET
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHHhcCCCEEEECCcCcccccC-CChhhHHHHHhcCCCEEEEC
Confidence 4899999987 46799999999999999999888888877789999999999988753 2223334445 589999999
Q ss_pred HHHHHHHHHcC
Q 039151 269 MGHQLLGQALG 279 (279)
Q Consensus 269 LGhQLLa~AlG 279 (279)
+|||+|+.++|
T Consensus 90 ~G~Qlla~~lG 100 (527)
T 3tqi_A 90 YGMQTMAYQLG 100 (527)
T ss_dssp HHHHHHHHHSS
T ss_pred hHHHHHHHHcC
Confidence 99999999987
No 14
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.61 E-value=3.6e-16 Score=153.84 Aligned_cols=86 Identities=34% Similarity=0.560 Sum_probs=71.1
Q ss_pred EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecH
Q 039151 193 RVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICM 269 (279)
Q Consensus 193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICL 269 (279)
+|+|||||. .++|.|.|++.|+.++++|++.+.+++.+.+||||||||||+++.+... ....+.++ .++|+||||+
T Consensus 1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~~~~~~i~~~~~dgiIlsGGp~s~~~~~~-~~~~~~~~~~~~PvLGIC~ 79 (503)
T 2ywb_A 1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA-PRPDPRLFSSGLPLLGICY 79 (503)
T ss_dssp CEEEEESSCTTHHHHHHHHHTTTCCEEEEETTCCHHHHHTTCCSEEEECCCSSCSSCTTC-CCCCGGGGCSSCCEEEETH
T ss_pred CEEEEECCCcHHHHHHHHHHHCCCEEEEEECCCCHHHHHhcCCCEEEECCCCchhccCCC-cchHHHHHhCCCCEEEECH
Confidence 489999987 4669999999999999999988888887778999999999998865321 11123445 5899999999
Q ss_pred HHHHHHHHcC
Q 039151 270 GHQLLGQALG 279 (279)
Q Consensus 270 GhQLLa~AlG 279 (279)
|||+|+.++|
T Consensus 80 G~Qlla~~~G 89 (503)
T 2ywb_A 80 GMQLLAQELG 89 (503)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHhC
Confidence 9999999987
No 15
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.61 E-value=4.6e-16 Score=153.93 Aligned_cols=87 Identities=25% Similarity=0.503 Sum_probs=72.0
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
.+|+|+|||. .++|.|.|++.|+.++++|++.+.+++.+.+||||||||||+++.+.. .....+.++ .++|+||||
T Consensus 8 ~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~~~~~~i~~~~~dgiILsGGp~s~~~~~-~~~~~~~~~~~g~PvLGIC 86 (525)
T 1gpm_A 8 HRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEEN-SPRAPQYVFEAGVPVFGVC 86 (525)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTT-CCCCCGGGGTSSSCEEEET
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCEEEEEECCCCHHHHhccCCCEEEECCcCccccccC-CcchHHHHHHCCCCEEEEC
Confidence 5899999987 456999999999999999998888888777899999999999886532 111123444 589999999
Q ss_pred HHHHHHHHHcC
Q 039151 269 MGHQLLGQALG 279 (279)
Q Consensus 269 LGhQLLa~AlG 279 (279)
+|||+|+.++|
T Consensus 87 ~G~Qlla~~~G 97 (525)
T 1gpm_A 87 YGMQTMAMQLG 97 (525)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHHcC
Confidence 99999999987
No 16
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.56 E-value=1e-15 Score=156.21 Aligned_cols=88 Identities=25% Similarity=0.311 Sum_probs=65.8
Q ss_pred ccEEEEEEcCchH--HHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 191 TYRVIAYDFGIKH--NILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 191 ~~~I~viD~G~k~--~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
+.+|+|+|||.+. .|.|.|+++|+.++++|++.+.+++...+||||||||||+++.+... ....+.++ .++|+|||
T Consensus 29 ~~~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~~~~e~i~~~~~dGIILsGGp~s~~~~~~-~~~~~~i~~~g~PvLGI 107 (697)
T 2vxo_A 29 EGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDA-PWFDPAIFTIGKPVLGI 107 (697)
T ss_dssp CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC-------C-CCCCGGGTTSSCCEEEE
T ss_pred CCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCHHHHhhcCCCEEEECCCCCcccCccc-hhHHHHHHhCCCCEEEE
Confidence 3579999999754 58899999999999999998888887678999999999998764210 00112334 58999999
Q ss_pred cHHHHHHHHHcC
Q 039151 268 CMGHQLLGQALG 279 (279)
Q Consensus 268 CLGhQLLa~AlG 279 (279)
|+|||+|+.++|
T Consensus 108 C~G~QlLa~~lG 119 (697)
T 2vxo_A 108 CYGMQMMNKVFG 119 (697)
T ss_dssp EHHHHHHHHHTT
T ss_pred CHHHHHHHHHhC
Confidence 999999999987
No 17
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.55 E-value=1.4e-14 Score=129.01 Aligned_cols=86 Identities=21% Similarity=0.316 Sum_probs=67.8
Q ss_pred cEEEEEEcCc---hHHHHHHHHHCCCeEEEEcCCCC---hhhhhccCCCeEEEcCCCCCCCCC---------hHHHHHHH
Q 039151 192 YRVIAYDFGI---KHNILRRLASYGCQIIVVPSTWP---ASETLKLKPDGVLFSNGPGDPSAV---------PYAVAIVK 256 (279)
Q Consensus 192 ~~I~viD~G~---k~~I~r~L~~~G~~v~vvp~~~~---~~~i~~~~~DgIiLSgGPGdp~~~---------~~~i~~Ir 256 (279)
|||++|.... ...+.++|.++|+++.+++.... ++++ .++|+|||||||++|.+. ..+.+.|+
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~~~--~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~ 78 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKDI--DDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQ 78 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCSCG--GGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCCCc--cccCEEEECCCCCCcccccccCcccchHHHHHHHH
Confidence 5788888632 46788999999999999875321 1122 379999999999998532 22678899
Q ss_pred HHH-CCCCEeeecHHHHHHHHHcC
Q 039151 257 ELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 257 ~~~-~~~PILGICLGhQLLa~AlG 279 (279)
+++ .++|+||||+|||+|+.++|
T Consensus 79 ~~~~~~~PvLGIClG~QlL~~~~G 102 (236)
T 3l7n_A 79 KAAKSEKIIVGVCLGAQLMGVAYG 102 (236)
T ss_dssp HHHHTTCEEEEETHHHHHHHHHTT
T ss_pred HHHHcCCCEEEEchHHHHHHHHhC
Confidence 988 79999999999999999987
No 18
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.50 E-value=2.2e-14 Score=129.17 Aligned_cols=77 Identities=30% Similarity=0.572 Sum_probs=62.0
Q ss_pred hHHHHHHHHHCCCeEEEEcCCCChh--hhhccCCCeEEEcCCCC-CCCC----------------ChHHHHHHHHHH-CC
Q 039151 202 KHNILRRLASYGCQIIVVPSTWPAS--ETLKLKPDGVLFSNGPG-DPSA----------------VPYAVAIVKELL-GK 261 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~~~~~--~i~~~~~DgIiLSgGPG-dp~~----------------~~~~i~~Ir~~~-~~ 261 (279)
..+++++|++.|+.+.++|+..+.+ +++ .++|||||+|||+ +|.. ...+++.|++++ .+
T Consensus 30 ~~~~~~~l~~aG~~pv~lp~~~~~~~~~~l-~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~ 108 (254)
T 3fij_A 30 QQRYVDAIQKVGGFPIALPIDDPSTAVQAI-SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAG 108 (254)
T ss_dssp CHHHHHHHHHHTCEEEEECCCCGGGHHHHH-HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHCCCEEEEEeCCCchHHHHHH-hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcC
Confidence 5678999999999999999865533 222 3799999999997 4421 123778899988 79
Q ss_pred CCEeeecHHHHHHHHHcC
Q 039151 262 VPVFGICMGHQLLGQALG 279 (279)
Q Consensus 262 ~PILGICLGhQLLa~AlG 279 (279)
+|+||||+|||+|+.|+|
T Consensus 109 ~PiLGIC~G~Qll~~a~G 126 (254)
T 3fij_A 109 KPIFAICRGMQLVNVALG 126 (254)
T ss_dssp CCEEEETHHHHHHHHHTT
T ss_pred CCEEEECHHHHHHHHHhC
Confidence 999999999999999987
No 19
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.50 E-value=5.8e-15 Score=135.84 Aligned_cols=88 Identities=17% Similarity=0.275 Sum_probs=66.4
Q ss_pred CccEEEEE-Ec-CchH---HHHHHHHHCCCe----EEEEcCCC----------Chhh------hhccCCCeEEEcCCCCC
Q 039151 190 KTYRVIAY-DF-GIKH---NILRRLASYGCQ----IIVVPSTW----------PASE------TLKLKPDGVLFSNGPGD 244 (279)
Q Consensus 190 ~~~~I~vi-D~-G~k~---~I~r~L~~~G~~----v~vvp~~~----------~~~~------i~~~~~DgIiLSgGPGd 244 (279)
.+++|++| || |.+. ++.++|+++|+. +.++..+. +.++ .. .++|||||+||||+
T Consensus 24 ~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~dgiil~GG~~~ 102 (289)
T 2v4u_A 24 KICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKL-CKADGILVPGGFGI 102 (289)
T ss_dssp EEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHH-HHCSEEEECSCCSS
T ss_pred CceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHH-hhCCEEEecCCCCc
Confidence 35799999 99 8755 899999988763 33332221 1121 11 36899999999998
Q ss_pred CCCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151 245 PSAVPYAVAIVKELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 245 p~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~AlG 279 (279)
+.. ...++.+++++ .++|+||||+|||+|+.|+|
T Consensus 103 ~~~-~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~G 137 (289)
T 2v4u_A 103 RGT-LGKLQAISWARTKKIPFLGVXLGMQLAVIEFA 137 (289)
T ss_dssp TTH-HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHHHcCCcEEEECccHHHHHHHHh
Confidence 553 56788899888 68999999999999999986
No 20
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.50 E-value=1.4e-14 Score=123.74 Aligned_cols=81 Identities=16% Similarity=0.241 Sum_probs=62.5
Q ss_pred cEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh----HHHHHHHHHHCCCCEee
Q 039151 192 YRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP----YAVAIVKELLGKVPVFG 266 (279)
Q Consensus 192 ~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~----~~i~~Ir~~~~~~PILG 266 (279)
++|+|+|+ |...++.++|++.|+++.+++. .+++ .++|||||+|||+++.+.. ...+.++ -.++|+||
T Consensus 1 m~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~---~~~~--~~~dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~PilG 73 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKR---VEDL--EGIDALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPILG 73 (186)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTSEEEEECS---GGGG--TTCSEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCEEE
T ss_pred CEEEEEecCcchHHHHHHHHHCCCEEEEECC---hHHh--ccCCEEEECCCCchhhhhhhhccCHHHHHH--hcCCcEEE
Confidence 57999998 7777888999999999999874 2344 3689999999998765311 1223333 25899999
Q ss_pred ecHHHHHHHHHcC
Q 039151 267 ICMGHQLLGQALG 279 (279)
Q Consensus 267 ICLGhQLLa~AlG 279 (279)
||+|||+|+.++|
T Consensus 74 IC~G~Qll~~~~g 86 (186)
T 2ywj_A 74 TCAGMVLLSKGTG 86 (186)
T ss_dssp ETHHHHHHSSCCS
T ss_pred ECHHHHHHHHHhC
Confidence 9999999999876
No 21
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.50 E-value=1.5e-14 Score=125.04 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=65.4
Q ss_pred cEEEEEEcC--chHHHHHHHHHCC-----CeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC-h-----HHHHHHHHH
Q 039151 192 YRVIAYDFG--IKHNILRRLASYG-----CQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV-P-----YAVAIVKEL 258 (279)
Q Consensus 192 ~~I~viD~G--~k~~I~r~L~~~G-----~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~-~-----~~i~~Ir~~ 258 (279)
|+|+|||+| ...++.++|++.| +++++++... + .++|+||| +|||++.+. + ...+.|+++
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~---~---~~~dglil-pG~g~~~~~~~~l~~~~~~~~i~~~ 73 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPR---N---DLYDLLFI-PGVGHFGEGMRRLRENDLIDFVRKH 73 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCC---S---SCCSEEEE-CCCSCSHHHHHHHHHTTCHHHHHHH
T ss_pred CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCc---c---cCCCEEEE-CCCCcHHHHHHHHHhhCHHHHHHHH
Confidence 589999997 5789999999999 9999987532 2 47999999 567887532 1 145778888
Q ss_pred H-CCCCEeeecHHHHHHHHHcC
Q 039151 259 L-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 259 ~-~~~PILGICLGhQLLa~AlG 279 (279)
+ .++|+||||+|||+|+.++|
T Consensus 74 ~~~~~PilGIC~G~Qll~~~~g 95 (201)
T 1gpw_B 74 VEDERYVVGVCLGMQLLFEESE 95 (201)
T ss_dssp HHTTCEEEEETHHHHTTSSEET
T ss_pred HHcCCeEEEEChhHHHHHHhhc
Confidence 7 78999999999999999874
No 22
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.50 E-value=5.7e-14 Score=125.54 Aligned_cols=88 Identities=20% Similarity=0.316 Sum_probs=68.7
Q ss_pred ccEEEEEEc---CchHHHHHHHHHCCCeEEEEcCCCChhhhhc--cCCCeEEEcCCCCCCCCC---h---HHHHHHHHHH
Q 039151 191 TYRVIAYDF---GIKHNILRRLASYGCQIIVVPSTWPASETLK--LKPDGVLFSNGPGDPSAV---P---YAVAIVKELL 259 (279)
Q Consensus 191 ~~~I~viD~---G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~--~~~DgIiLSgGPGdp~~~---~---~~i~~Ir~~~ 259 (279)
..||++|.. +-..++.+.|+..|+++.+++.+.. +++.+ .++|||||+|||+++.+. + ...+.|++++
T Consensus 12 ~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~-~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~ 90 (239)
T 1o1y_A 12 HVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKG-EKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEIL 90 (239)
T ss_dssp CCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGT-CCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCc-cccccchhcCCEEEECCCCccccCCccChhHHHHHHHHHHHH
Confidence 468988875 3367889999999999998876421 11111 379999999999888653 2 4678888887
Q ss_pred -CCCCEeeecHHHHHHHHHcC
Q 039151 260 -GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 260 -~~~PILGICLGhQLLa~AlG 279 (279)
.++|+||||+|||+|+.++|
T Consensus 91 ~~~~PiLGIC~G~QlL~~alG 111 (239)
T 1o1y_A 91 KKEIPFLGICLGSQMLAKVLG 111 (239)
T ss_dssp HHTCCEEEETHHHHHHHHHTT
T ss_pred HCCCCEEEEchhHHHHHHHcC
Confidence 68999999999999999987
No 23
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.46 E-value=2.2e-13 Score=123.19 Aligned_cols=86 Identities=26% Similarity=0.385 Sum_probs=68.5
Q ss_pred cEEEEEEc---CchHHHHHHHHHCCCeEEEEcCCC---ChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-C
Q 039151 192 YRVIAYDF---GIKHNILRRLASYGCQIIVVPSTW---PASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-G 260 (279)
Q Consensus 192 ~~I~viD~---G~k~~I~r~L~~~G~~v~vvp~~~---~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~ 260 (279)
++|++|+. .-..++.++|+++|+++++++.+. ..+++ .++|+|||+|||+++.+. ...++.|++++ .
T Consensus 4 ~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~--~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~ 81 (250)
T 3m3p_A 4 KPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEI--RDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQ 81 (250)
T ss_dssp CCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCG--GGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCcc--ccCCEEEECCCCCcccccchHHHHHHHHHHHHHHc
Confidence 47888874 347889999999999999997532 12223 379999999999987642 34567888887 6
Q ss_pred CCCEeeecHHHHHHHHHcC
Q 039151 261 KVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 261 ~~PILGICLGhQLLa~AlG 279 (279)
++|+||||+|||+|+.++|
T Consensus 82 ~~PvlGIC~G~Qll~~~lG 100 (250)
T 3m3p_A 82 RVPVIGHCLGGQLLAKAMG 100 (250)
T ss_dssp TCCEEEETHHHHHHHHHTT
T ss_pred CCCEEEECHHHHHHHHHhC
Confidence 9999999999999999997
No 24
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.46 E-value=3.6e-14 Score=122.76 Aligned_cols=80 Identities=24% Similarity=0.406 Sum_probs=65.0
Q ss_pred cEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC------hHHHHHHHHHH-CCC
Q 039151 192 YRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV------PYAVAIVKELL-GKV 262 (279)
Q Consensus 192 ~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~------~~~i~~Ir~~~-~~~ 262 (279)
++|+++|+| ...++.+.|++.|+++++++.. +++ .++|+||| +|||+|... ....+.|++++ .++
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~---~~l--~~~d~lil-~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~ 76 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDP---KAH--EEADLLVL-PGQGHFGQVMRAFQESGFVERVRRHLERGL 76 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESST---TSC--SSCSEEEE-CCCSCHHHHHHTTSSSCTHHHHHHHHHTTC
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecCh---HHc--ccCCEEEE-CCCCcHHHHHHHHHhcCHHHHHHHHHHcCC
Confidence 589999997 4788999999999999999743 233 37999999 677876421 23578888887 799
Q ss_pred CEeeecHHHHHHHHH
Q 039151 263 PVFGICMGHQLLGQA 277 (279)
Q Consensus 263 PILGICLGhQLLa~A 277 (279)
|+||||+|||+|+.+
T Consensus 77 PilGIC~G~Qll~~~ 91 (200)
T 1ka9_H 77 PFLGICVGMQVLYEG 91 (200)
T ss_dssp CEEECTHHHHTTSSE
T ss_pred eEEEEcHHHHHHHHh
Confidence 999999999999988
No 25
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.43 E-value=2.6e-13 Score=126.25 Aligned_cols=77 Identities=19% Similarity=0.338 Sum_probs=59.9
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhhhhc--cCCCeEEEcCCCCCCCCCh------HHHHHHHHHH-C--CCCEeeecHHH
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASETLK--LKPDGVLFSNGPGDPSAVP------YAVAIVKELL-G--KVPVFGICMGH 271 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~i~~--~~~DgIiLSgGPGdp~~~~------~~i~~Ir~~~-~--~~PILGICLGh 271 (279)
.++.++|++.|++++++|.+.+.+++.+ .++|||||+|||+++.... ..++.+++.. . ++|+||||+||
T Consensus 55 ~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~ 134 (315)
T 1l9x_A 55 ASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGF 134 (315)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHH
T ss_pred HHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHH
Confidence 4688999999999999998766555533 2799999999999976541 2344444444 2 59999999999
Q ss_pred HHHHHHcC
Q 039151 272 QLLGQALG 279 (279)
Q Consensus 272 QLLa~AlG 279 (279)
|+|+.|+|
T Consensus 135 Qll~~a~G 142 (315)
T 1l9x_A 135 EELSLLIS 142 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999986
No 26
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.41 E-value=1.3e-13 Score=118.60 Aligned_cols=83 Identities=17% Similarity=0.342 Sum_probs=65.2
Q ss_pred cEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCEe
Q 039151 192 YRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPVF 265 (279)
Q Consensus 192 ~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PIL 265 (279)
+||+++|+ |...++++.|++.|+++.+++. .+++ .++|+|||+|||+++.+. ....+.|++++ .++|+|
T Consensus 2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~---~~~l--~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pil 76 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKR---PEQL--NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMF 76 (196)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTCEEEEECS---GGGG--GGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEE
T ss_pred cEEEEEEccCCcHHHHHHHHHCCCEEEEeCC---hHHH--hhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEE
Confidence 58999998 4455667999999999988864 3344 369999999998765431 12267888887 799999
Q ss_pred eecHHHHHHHHHcC
Q 039151 266 GICMGHQLLGQALG 279 (279)
Q Consensus 266 GICLGhQLLa~AlG 279 (279)
|||+|||+|+.++|
T Consensus 77 gIC~G~q~l~~~~g 90 (196)
T 2nv0_A 77 GTCAGLIILAKEIA 90 (196)
T ss_dssp EETHHHHHHSBCCC
T ss_pred EECHHHHHHHHHhc
Confidence 99999999999876
No 27
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.40 E-value=1.1e-13 Score=121.71 Aligned_cols=84 Identities=17% Similarity=0.314 Sum_probs=65.6
Q ss_pred ccEEEEEEcCc-hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCCE
Q 039151 191 TYRVIAYDFGI-KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVPV 264 (279)
Q Consensus 191 ~~~I~viD~G~-k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~PI 264 (279)
+++|+++|+.. ..++++.|++.|+++.+++. .+++ .++|+|||+|||+++.+. ....+.|++++ .++|+
T Consensus 23 ~~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~---~~~l--~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~Pi 97 (219)
T 1q7r_A 23 NMKIGVLGLQGAVREHVRAIEACGAEAVIVKK---SEQL--EGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPM 97 (219)
T ss_dssp CCEEEEESCGGGCHHHHHHHHHTTCEEEEECS---GGGG--TTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCE
T ss_pred CCEEEEEeCCCCcHHHHHHHHHCCCEEEEECC---HHHH--hhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeE
Confidence 57999999843 44567899999999999875 2344 379999999998755321 12367888887 79999
Q ss_pred eeecHHHHHHHHHcC
Q 039151 265 FGICMGHQLLGQALG 279 (279)
Q Consensus 265 LGICLGhQLLa~AlG 279 (279)
||||+|||+|+.++|
T Consensus 98 lGIC~G~QlL~~~~g 112 (219)
T 1q7r_A 98 FGTCAGLILLAKRIV 112 (219)
T ss_dssp EEETTHHHHHEEEEE
T ss_pred EEECHHHHHHHHHhC
Confidence 999999999998875
No 28
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.38 E-value=2.1e-13 Score=118.91 Aligned_cols=85 Identities=18% Similarity=0.286 Sum_probs=64.3
Q ss_pred CccEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC----hHHHHHHHHHH-CCCC
Q 039151 190 KTYRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV----PYAVAIVKELL-GKVP 263 (279)
Q Consensus 190 ~~~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~----~~~i~~Ir~~~-~~~P 263 (279)
.+++|+++|+ |...++++.|++.|+++.+++. .+++. ++|+|||+||+.+..+. ....+.|++++ .++|
T Consensus 19 ~~~~I~ii~~~~~~~~~~~~l~~~g~~~~~~~~---~~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~P 93 (208)
T 2iss_D 19 SHMKIGVLGVQGDVREHVEALHKLGVETLIVKL---PEQLD--MVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLP 93 (208)
T ss_dssp -CCEEEEECSSSCHHHHHHHHHHTTCEEEEECS---GGGGG--GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCcEEEEEECCCchHHHHHHHHHCCCEEEEeCC---hHHHh--hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCe
Confidence 4579999999 5466788999999999998864 34443 69999998875222110 11357788887 7999
Q ss_pred EeeecHHHHHHHHHcC
Q 039151 264 VFGICMGHQLLGQALG 279 (279)
Q Consensus 264 ILGICLGhQLLa~AlG 279 (279)
+||||+|||+|+.++|
T Consensus 94 ilGIC~G~QlL~~~~g 109 (208)
T 2iss_D 94 VFATCAGVILLAKRIK 109 (208)
T ss_dssp EEEETHHHHHHEEEEC
T ss_pred EEEECHHHHHHHHHcC
Confidence 9999999999999876
No 29
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.37 E-value=5.8e-13 Score=121.46 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=63.2
Q ss_pred cEEEEE-EcC---c--hHHHHHHHH----HCCCeEEEEcCCCC---------hhhhhccCCCeEEEcCCCCCCCCChHHH
Q 039151 192 YRVIAY-DFG---I--KHNILRRLA----SYGCQIIVVPSTWP---------ASETLKLKPDGVLFSNGPGDPSAVPYAV 252 (279)
Q Consensus 192 ~~I~vi-D~G---~--k~~I~r~L~----~~G~~v~vvp~~~~---------~~~i~~~~~DgIiLSgGPGdp~~~~~~i 252 (279)
.+|+++ |+| . ..++.++|. +.++++.++..+.. .++.. .++|||||+||||++.. ...+
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~-~~~dgiil~GG~~~~~~-~~~~ 86 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKAL-LGCDGIFVPGGFGNRGV-DGKC 86 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHH-HTCSEEEECCCCTTTTH-HHHH
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHH-hhCCEEEecCCCCCcCc-hhHH
Confidence 689999 886 2 445555554 45677887765421 11211 37999999999998653 4577
Q ss_pred HHHHHHH-CCCCEeeecHHHHHHHHHcC
Q 039151 253 AIVKELL-GKVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 253 ~~Ir~~~-~~~PILGICLGhQLLa~AlG 279 (279)
+.++.++ .++|+||||+|||+|+.|+|
T Consensus 87 ~~i~~~~~~~~PilGIC~G~Qll~~a~G 114 (273)
T 2w7t_A 87 AAAQVARMNNIPYFGVXLGMQVAVIELS 114 (273)
T ss_dssp HHHHHHHHHTCCEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEECcCHHHHHHHHh
Confidence 8888888 69999999999999999876
No 30
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.32 E-value=4.3e-13 Score=114.38 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=64.1
Q ss_pred cEEEEEEc-CchHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCC-CCCC---hHHHHHHHHHH-CC-CCE
Q 039151 192 YRVIAYDF-GIKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGD-PSAV---PYAVAIVKELL-GK-VPV 264 (279)
Q Consensus 192 ~~I~viD~-G~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGd-p~~~---~~~i~~Ir~~~-~~-~PI 264 (279)
++|.|+.+ |-..++.++|++.|+++.+++.. +++ .++|||+|+||++. +.+. ....+.|+++. .+ +|+
T Consensus 3 p~Igi~~~~~~~~~~~~~l~~~G~~~~~~~~~---~~l--~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~Pi 77 (191)
T 2ywd_A 3 GVVGVLALQGDFREHKEALKRLGIEAKEVRKK---EHL--EGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLAL 77 (191)
T ss_dssp CCEEEECSSSCHHHHHHHHHTTTCCCEEECSG---GGG--TTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEE
T ss_pred cEEEEEecCCchHHHHHHHHHCCCEEEEeCCh---hhh--ccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeE
Confidence 46888876 66678999999999999998742 344 36899999999632 2221 23467888887 68 999
Q ss_pred eeecHHHHHHHHHcC
Q 039151 265 FGICMGHQLLGQALG 279 (279)
Q Consensus 265 LGICLGhQLLa~AlG 279 (279)
||||+|||+|+.++|
T Consensus 78 lGiC~G~Q~l~~~~g 92 (191)
T 2ywd_A 78 FGTCAGAIWLAKEIV 92 (191)
T ss_dssp EEETHHHHHHEEEET
T ss_pred EEECHHHHHHHHHhC
Confidence 999999999999876
No 31
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.26 E-value=6.7e-12 Score=108.56 Aligned_cols=81 Identities=14% Similarity=0.066 Sum_probs=64.7
Q ss_pred cEEEEEEcCc-h--HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC--------ChHHHHHHHHHH-
Q 039151 192 YRVIAYDFGI-K--HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA--------VPYAVAIVKELL- 259 (279)
Q Consensus 192 ~~I~viD~G~-k--~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~--------~~~~i~~Ir~~~- 259 (279)
++|+++|++. . .++.+.|++.|+++.+++... ++ .++|+|||+||++.+.. .....+.|+++.
T Consensus 3 ~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~~--~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (213)
T 3d54_D 3 PRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD---KL--DDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAE 77 (213)
T ss_dssp CEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC---CC--SSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHH
T ss_pred cEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC---Cc--ccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHH
Confidence 5899999953 2 688999999999999997542 22 37999999998754432 134678888888
Q ss_pred CCCCEeeecHHHHHHHHH
Q 039151 260 GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 260 ~~~PILGICLGhQLLa~A 277 (279)
.++|+||||+|||+|+.|
T Consensus 78 ~~~pilgIC~G~qlLa~a 95 (213)
T 3d54_D 78 RGKLIMGICNGFQILIEM 95 (213)
T ss_dssp HTCEEEECHHHHHHHHHH
T ss_pred CCCEEEEECHHHHHHHHc
Confidence 689999999999999998
No 32
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.18 E-value=6e-12 Score=110.78 Aligned_cols=84 Identities=15% Similarity=0.240 Sum_probs=63.5
Q ss_pred ccEEEEEEcC-chHHHHHHHHHC---CCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCC---C---hHHHHHHHHHH-
Q 039151 191 TYRVIAYDFG-IKHNILRRLASY---GCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSA---V---PYAVAIVKELL- 259 (279)
Q Consensus 191 ~~~I~viD~G-~k~~I~r~L~~~---G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~---~---~~~i~~Ir~~~- 259 (279)
+++|.|++++ .-.+.++.|++. |+++.+++. .+++. ++|+|||+||+.+..+ . ....+.|++++
T Consensus 3 ~~~I~Il~~~~~~~~~~~~l~~~~~~G~~~~~~~~---~~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~ 77 (227)
T 2abw_A 3 EITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRN---VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIH 77 (227)
T ss_dssp CEEEEEECTTSCCHHHHHHHHTTCCTTEEEEEECS---HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCcHHHHHHHHHhccCCeEEEEEcC---ccccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3689999884 345678899988 998888763 34553 6999999999854321 1 23467888887
Q ss_pred C-CCCEeeecHHHHHHHHHcC
Q 039151 260 G-KVPVFGICMGHQLLGQALG 279 (279)
Q Consensus 260 ~-~~PILGICLGhQLLa~AlG 279 (279)
. ++|+||||+|||+|+.++|
T Consensus 78 ~~g~PilGIC~G~QlL~~~~g 98 (227)
T 2abw_A 78 VLKKPIWGTCAGCILLSKNVE 98 (227)
T ss_dssp TSCCCEEEETHHHHHTEEEEE
T ss_pred hcCCEEEEECHHHHHHHHHhc
Confidence 7 8999999999999998764
No 33
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.14 E-value=1.1e-11 Score=123.53 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=64.6
Q ss_pred cEEEEEEcC--chHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCCh------HHHHHHHHHH-CCC
Q 039151 192 YRVIAYDFG--IKHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVP------YAVAIVKELL-GKV 262 (279)
Q Consensus 192 ~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~Ir~~~-~~~ 262 (279)
++|+++|++ ...++.++|++.|+++.+++.... ..+ .++||||| +|||++.... ...+.|++++ .++
T Consensus 5 ~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~~-~~l--~~~DglIL-pGgG~~~~~~~~l~~~~~~~~i~~~~~~g~ 80 (555)
T 1jvn_A 5 PVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKD-FNI--SGTSRLIL-PGVGNYGHFVDNLFNRGFEKPIREYIESGK 80 (555)
T ss_dssp CEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGG-CCS--TTCSCEEE-EECSCHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCccc-ccc--ccCCEEEE-CCCCchHhHhhhhhhccHHHHHHHHHHcCC
Confidence 589999996 578999999999999999874211 113 37999999 5667764321 2467788887 789
Q ss_pred CEeeecHHHHHHHHHc
Q 039151 263 PVFGICMGHQLLGQAL 278 (279)
Q Consensus 263 PILGICLGhQLLa~Al 278 (279)
|+||||+|||+|+.++
T Consensus 81 PiLGIC~G~QlL~~a~ 96 (555)
T 1jvn_A 81 PIMGIXVGLQALFAGS 96 (555)
T ss_dssp CEEEEEHHHHTTEEEE
T ss_pred cEEEEchhhhhhhhhh
Confidence 9999999999999876
No 34
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=98.82 E-value=4e-09 Score=97.84 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=58.0
Q ss_pred CccEEEEEEcCc-h----HHHHHHHHHCCCeEEE--EcCC--C--------------ChhhhhccCCCeEEEcCCCCCCC
Q 039151 190 KTYRVIAYDFGI-K----HNILRRLASYGCQIIV--VPST--W--------------PASETLKLKPDGVLFSNGPGDPS 246 (279)
Q Consensus 190 ~~~~I~viD~G~-k----~~I~r~L~~~G~~v~v--vp~~--~--------------~~~~i~~~~~DgIiLSgGPGdp~ 246 (279)
..+||+++++=- | ..+.|.|.....++.+ +... . +++++...++||+||+|||-+..
T Consensus 34 rplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~ 113 (301)
T 2vdj_A 34 RALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETL 113 (301)
T ss_dssp CCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTS
T ss_pred CCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCC
Confidence 468999999821 2 3455666555544544 4221 1 24454446899999999996542
Q ss_pred ---CC---hHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151 247 ---AV---PYAVAIVKELL-GKVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 247 ---~~---~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al 278 (279)
+. ..+.+.++.+. ..+|+||||+|||+++.++
T Consensus 114 ~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~ 152 (301)
T 2vdj_A 114 SFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHH 152 (301)
T ss_dssp CGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHH
T ss_pred CcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHh
Confidence 23 23455666665 6899999999999965554
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=98.81 E-value=4.9e-09 Score=97.68 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=58.8
Q ss_pred CccEEEEEEcCc-h----HHHHHHHHHCCCeEEE--EcCC--C--------------ChhhhhccCCCeEEEcCCCCCCC
Q 039151 190 KTYRVIAYDFGI-K----HNILRRLASYGCQIIV--VPST--W--------------PASETLKLKPDGVLFSNGPGDPS 246 (279)
Q Consensus 190 ~~~~I~viD~G~-k----~~I~r~L~~~G~~v~v--vp~~--~--------------~~~~i~~~~~DgIiLSgGPGdp~ 246 (279)
..+||+++++=- | ..+.|.|.....++.+ +... . +++++...++||+||+|||-+..
T Consensus 46 rplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~~ 125 (312)
T 2h2w_A 46 RPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVELL 125 (312)
T ss_dssp CCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTTS
T ss_pred CCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCCC
Confidence 468999999821 2 3466777665655554 4221 1 24444446799999999996542
Q ss_pred ---CCh---HHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151 247 ---AVP---YAVAIVKELL-GKVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 247 ---~~~---~~i~~Ir~~~-~~~PILGICLGhQLLa~Al 278 (279)
+.+ .+.+.++.+. ..+|+||||+|||+++.++
T Consensus 126 ~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~ 164 (312)
T 2h2w_A 126 PFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYF 164 (312)
T ss_dssp CGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHh
Confidence 232 3455666665 6899999999999966654
No 36
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.57 E-value=3.6e-08 Score=87.45 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=60.3
Q ss_pred cEEEEEEcCc--------hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCCh------HHHHHHH
Q 039151 192 YRVIAYDFGI--------KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAVP------YAVAIVK 256 (279)
Q Consensus 192 ~~I~viD~G~--------k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~~------~~i~~Ir 256 (279)
.+|++||++. ..++.+.|++.|+++.++....+. +++. +.|+|+++| |+..... ...+.|+
T Consensus 32 ~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~--~ad~I~lpG--G~~~~~~~~l~~~gl~~~l~ 107 (229)
T 1fy2_A 32 RSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGG--GNTFQLLKESRERGLLAPMA 107 (229)
T ss_dssp CEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH--HCSEEEECC--SCHHHHHHHHHHTTCHHHHH
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh--cCCEEEECC--CcHHHHHHHHHHCChHHHHH
Confidence 5899999974 356778899999988877532233 5554 689999965 6654321 2456788
Q ss_pred HHH-CCCCEeeecHHHHHHHH
Q 039151 257 ELL-GKVPVFGICMGHQLLGQ 276 (279)
Q Consensus 257 ~~~-~~~PILGICLGhQLLa~ 276 (279)
+++ .++|++|+|.|+|+|+.
T Consensus 108 ~~~~~G~p~~G~sAG~~~l~~ 128 (229)
T 1fy2_A 108 DRVKRGALYIGWSAGANLACP 128 (229)
T ss_dssp HHHHTTCEEEEETHHHHHTSS
T ss_pred HHHHcCCEEEEECHHHHhhcc
Confidence 777 78999999999999875
No 37
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=98.54 E-value=1.3e-07 Score=102.06 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=62.2
Q ss_pred CccEEEEEEc-Cc--hHHHHHHHHHCCCeEEEEcCC---CChhhhhccCCCeEEEcCCC--CCCCCC-----------hH
Q 039151 190 KTYRVIAYDF-GI--KHNILRRLASYGCQIIVVPST---WPASETLKLKPDGVLFSNGP--GDPSAV-----------PY 250 (279)
Q Consensus 190 ~~~~I~viD~-G~--k~~I~r~L~~~G~~v~vvp~~---~~~~~i~~~~~DgIiLSgGP--Gdp~~~-----------~~ 250 (279)
.++||+|||| |. .+++.++|++.|+++.+++.. ...+++ .++|+|+|+||. ||.-.. ..
T Consensus 1046 ~~pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l--~~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~ 1123 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGL--GNFHALVACGGFSYGDVLGAGEGWAKSILFNHR 1123 (1303)
T ss_dssp CCCEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCG--GGCSEEEECCSCGGGGTTSTTHHHHHHHHTSHH
T ss_pred CCCEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccH--hhCCEEEECCCCcchhhhccchhHHHHHHhchh
Confidence 4679999999 54 468899999999999888631 112233 369999999884 231111 23
Q ss_pred HHHHHHHHH--CCCCEeeecHHHHHHHHH
Q 039151 251 AVAIVKELL--GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 251 ~i~~Ir~~~--~~~PILGICLGhQLLa~A 277 (279)
..+.+++++ .++|+||||+|+|+|+.+
T Consensus 1124 l~~~l~~~~~~~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A 1124 VRDEFETFFHRPQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp HHHHHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcEEEECHHHHHHHHh
Confidence 445677765 589999999999999875
No 38
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.40 E-value=2.4e-07 Score=81.17 Aligned_cols=82 Identities=13% Similarity=0.042 Sum_probs=60.2
Q ss_pred ccEEEEEEcCch--------HHHHHHHHHCCCeEEEEcCC-CCh----hhhhccCCCeEEEcCCCCCCCCC------hHH
Q 039151 191 TYRVIAYDFGIK--------HNILRRLASYGCQIIVVPST-WPA----SETLKLKPDGVLFSNGPGDPSAV------PYA 251 (279)
Q Consensus 191 ~~~I~viD~G~k--------~~I~r~L~~~G~~v~vvp~~-~~~----~~i~~~~~DgIiLSgGPGdp~~~------~~~ 251 (279)
+.+|++|+++.. .++.+.|++.|+++.+++.. .+. +.+ .+.|+|+++| |+.... ...
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l--~~ad~I~l~G--G~~~~l~~~L~~~gl 102 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKL--RKNDFIYVTG--GNTFFLLQELKRTGA 102 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHH--HHSSEEEECC--SCHHHHHHHHHHHTH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHH--HhCCEEEECC--CCHHHHHHHHHHCCh
Confidence 369999998653 56778899999999887522 233 233 3689999965 665432 235
Q ss_pred HHHHHHHH-CCCCEeeecHHHHHHHH
Q 039151 252 VAIVKELL-GKVPVFGICMGHQLLGQ 276 (279)
Q Consensus 252 i~~Ir~~~-~~~PILGICLGhQLLa~ 276 (279)
.+.|++++ +++|++|||.|+|+|+.
T Consensus 103 ~~~l~~~~~~G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 103 DKLILEEIAAGKLYIGESAGAVITSP 128 (206)
T ss_dssp HHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred HHHHHHHHHcCCeEEEECHHHHHhcc
Confidence 67788887 78999999999999864
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=98.24 E-value=4.5e-06 Score=71.41 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=62.9
Q ss_pred ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCCC-----------------hhhhhccCCCeEEEcCCCCC--CC
Q 039151 191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTWP-----------------ASETLKLKPDGVLFSNGPGD--PS 246 (279)
Q Consensus 191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~~-----------------~~~i~~~~~DgIiLSgGPGd--p~ 246 (279)
.++|+++-+ |+. ....+.|++.|+++.++..+.. ++++...++|+|||+||++. ..
T Consensus 23 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~~~l~ 102 (193)
T 1oi4_A 23 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLR 102 (193)
T ss_dssp CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHHT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCHHHhh
Confidence 457888866 552 3467888899999998854321 11221236899999999652 12
Q ss_pred CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 247 AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 247 ~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
..+...++|+++. .++|+.|||.|.|+|+.|
T Consensus 103 ~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 103 GDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp TSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred hCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 2456888999988 799999999999999986
No 40
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=98.09 E-value=1e-05 Score=67.15 Aligned_cols=86 Identities=23% Similarity=0.307 Sum_probs=62.4
Q ss_pred cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCC--CCCh
Q 039151 192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDP--SAVP 249 (279)
Q Consensus 192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp--~~~~ 249 (279)
+||+++=+ |+. ...++.|++.|+++.++..+. +++++...++|.|||.||++.. ...+
T Consensus 3 ~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~ 82 (168)
T 3l18_A 3 MKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNE 82 (168)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTCH
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhccCH
Confidence 57777755 552 345678888999999885431 1233322369999999998531 2346
Q ss_pred HHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 250 YAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 250 ~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
...++++++. .++|+.+||.|.++|+.|
T Consensus 83 ~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 83 KAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp HHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 7888999988 799999999999999976
No 41
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=97.84 E-value=4.7e-05 Score=64.25 Aligned_cols=87 Identities=18% Similarity=0.273 Sum_probs=61.5
Q ss_pred ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC--------------------ChhhhhccCCCeEEEcCCCCCC
Q 039151 191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW--------------------PASETLKLKPDGVLFSNGPGDP 245 (279)
Q Consensus 191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~--------------------~~~~i~~~~~DgIiLSgGPGdp 245 (279)
.++|+++=+ |+. ...++.|+..|+++.++..+. +++++...++|.|||.||++++
T Consensus 9 ~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~ 88 (190)
T 2vrn_A 9 GKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNP 88 (190)
T ss_dssp TCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhH
Confidence 357887755 552 335577888999998875321 1122222369999999997543
Q ss_pred ---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 246 ---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 246 ---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
...+..+++|+++. .++||.+||.|.++|+.|
T Consensus 89 ~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 89 DKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred HHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 23467889999988 799999999999999986
No 42
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=97.83 E-value=4e-05 Score=65.34 Aligned_cols=73 Identities=23% Similarity=0.162 Sum_probs=56.0
Q ss_pred HHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEee
Q 039151 205 ILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFG 266 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILG 266 (279)
-++.|++.|++++++..+. +++++...+||+|||+||+|.. .+.+...+++|++. .++||.+
T Consensus 27 p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaa 106 (177)
T 4hcj_A 27 SKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAG 106 (177)
T ss_dssp HHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEE
Confidence 4577888999998875321 2344444579999999998742 23467889999988 7999999
Q ss_pred ecHHHHHHHHH
Q 039151 267 ICMGHQLLGQA 277 (279)
Q Consensus 267 ICLGhQLLa~A 277 (279)
||.|.++|+.|
T Consensus 107 IC~g~~~La~a 117 (177)
T 4hcj_A 107 IGSGVVIMANA 117 (177)
T ss_dssp ETTHHHHHHHT
T ss_pred ecccHHHHHHC
Confidence 99999999875
No 43
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=97.74 E-value=6.8e-05 Score=63.91 Aligned_cols=86 Identities=17% Similarity=0.103 Sum_probs=62.0
Q ss_pred cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC----------------Chhhh-hccCCCeEEEcCCCCCCC---
Q 039151 192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW----------------PASET-LKLKPDGVLFSNGPGDPS--- 246 (279)
Q Consensus 192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~----------------~~~~i-~~~~~DgIiLSgGPGdp~--- 246 (279)
+||+++=+ |+. ...++.|++.|+++.++..+- +++++ ...++|.|||.||++.+.
T Consensus 4 ~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l~ 83 (197)
T 2rk3_A 4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLS 83 (197)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHHH
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHhh
Confidence 46766655 552 345678888999999885321 12333 224799999999975432
Q ss_pred CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 247 AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 247 ~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
..+..+++++++. .++||.+||.|.++|+.|
T Consensus 84 ~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 84 ESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 2456788999988 799999999999999976
No 44
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=97.67 E-value=7.5e-05 Score=64.30 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=61.0
Q ss_pred EEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC------------------ChhhhhccCCCeEEEcCCCCCCCC--
Q 039151 193 RVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW------------------PASETLKLKPDGVLFSNGPGDPSA-- 247 (279)
Q Consensus 193 ~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~------------------~~~~i~~~~~DgIiLSgGPGdp~~-- 247 (279)
+|+++=+ |+. ...++.|++.|++++++..+- +++++...++|.|||+||++.+.+
T Consensus 4 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l~ 83 (205)
T 2ab0_A 4 SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFR 83 (205)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHH
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHhc
Confidence 5666654 552 335677888999999885421 123333347999999999754432
Q ss_pred -ChHHHHHHHHHH-CCCCEeeecHHH-HHHHHH
Q 039151 248 -VPYAVAIVKELL-GKVPVFGICMGH-QLLGQA 277 (279)
Q Consensus 248 -~~~~i~~Ir~~~-~~~PILGICLGh-QLLa~A 277 (279)
.+..+++++++. .++||.+||.|. ++|+.|
T Consensus 84 ~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 84 DSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred cCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 456788999888 799999999999 999864
No 45
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=97.61 E-value=0.00015 Score=63.59 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=61.0
Q ss_pred cEEEEEEc------Cch----HHHHHHHHHCCCeEEEEcCCC---------------------------------Chhhh
Q 039151 192 YRVIAYDF------GIK----HNILRRLASYGCQIIVVPSTW---------------------------------PASET 228 (279)
Q Consensus 192 ~~I~viD~------G~k----~~I~r~L~~~G~~v~vvp~~~---------------------------------~~~~i 228 (279)
++|+++=+ |+. ...++.|++.|++++++..+- +++++
T Consensus 7 ~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~ 86 (232)
T 1vhq_A 7 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA 86 (232)
T ss_dssp CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred CeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHc
Confidence 36777644 442 234577888999999885321 11222
Q ss_pred hccCCCeEEEcCCCCCC---C----------CChHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151 229 LKLKPDGVLFSNGPGDP---S----------AVPYAVAIVKELL-GKVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 229 ~~~~~DgIiLSgGPGdp---~----------~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al 278 (279)
...++|+|||+||.+.+ . ..+...++++++. .++||.+||.|-++|+.|+
T Consensus 87 ~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL 150 (232)
T 1vhq_A 87 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIF 150 (232)
T ss_dssp CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHC
T ss_pred CcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHh
Confidence 12369999999997642 1 1456788999988 7999999999999999874
No 46
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=97.59 E-value=0.00015 Score=61.38 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=61.0
Q ss_pred cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC----------------ChhhhhccCCCeEEEcCCCCCC---CC
Q 039151 192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW----------------PASETLKLKPDGVLFSNGPGDP---SA 247 (279)
Q Consensus 192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DgIiLSgGPGdp---~~ 247 (279)
+||+++=+ |+. ...++.|++.|++++++..+- +++++....+|.|||.||.+.+ ..
T Consensus 6 kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 85 (190)
T 4e08_A 6 KSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGE 85 (190)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHHH
T ss_pred cEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhhh
Confidence 46766544 552 335678888999999885432 1233333468999999984322 22
Q ss_pred ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 248 VPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 248 ~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.+..+++++++. .++||.+||-|.++|+.|
T Consensus 86 ~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 86 SSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp CHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 456788899888 799999999999999875
No 47
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=97.48 E-value=0.00026 Score=59.86 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=53.6
Q ss_pred HHHHHHHH-CCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCC-CCCChHHHHHHHHHH-CCCCEe
Q 039151 204 NILRRLAS-YGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGD-PSAVPYAVAIVKELL-GKVPVF 265 (279)
Q Consensus 204 ~I~r~L~~-~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGd-p~~~~~~i~~Ir~~~-~~~PIL 265 (279)
..++.|++ .|+++.++..+- +++++...++|.|||+||++. ....+..+++++++. .++||.
T Consensus 19 ~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~l~~~l~~~~~~~k~i~ 98 (188)
T 2fex_A 19 LLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVA 98 (188)
T ss_dssp HHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccHHHHHHHHHHHHCCCEEE
Confidence 35677777 899998875431 122222236899999999752 123456788899888 799999
Q ss_pred eecHHHHHHHHH
Q 039151 266 GICMGHQLLGQA 277 (279)
Q Consensus 266 GICLGhQLLa~A 277 (279)
+||-|.++|+.|
T Consensus 99 aiC~G~~~La~a 110 (188)
T 2fex_A 99 GICAAASALGGT 110 (188)
T ss_dssp EETHHHHHHHHT
T ss_pred EECHHHHHHHHC
Confidence 999999999976
No 48
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=97.45 E-value=0.00076 Score=58.46 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=53.7
Q ss_pred HHHHHHHHC-CCeEEEEcCCC--------------ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 204 NILRRLASY-GCQIIVVPSTW--------------PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 204 ~I~r~L~~~-G~~v~vvp~~~--------------~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
...+.|.+. |+++.++..+- +++++ ..++|.|||.||++.....+..+++++++. .++|+.+|
T Consensus 21 ~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~~~~~l~~~l~~~~~~gk~iaai 99 (206)
T 3f5d_A 21 YLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAI 99 (206)
T ss_dssp HHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhhcCHHHHHHHHHHHHcCCEEEEE
Confidence 455667766 88888774321 12233 236899999999864334567889999988 79999999
Q ss_pred cHHHHHHHHH
Q 039151 268 CMGHQLLGQA 277 (279)
Q Consensus 268 CLGhQLLa~A 277 (279)
|-|.++|+.|
T Consensus 100 C~G~~~La~a 109 (206)
T 3f5d_A 100 CGAVDFLAKN 109 (206)
T ss_dssp THHHHHHHHT
T ss_pred CHHHHHHHHc
Confidence 9999999976
No 49
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.37 E-value=0.00067 Score=56.40 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=50.6
Q ss_pred HHHHHHCCCeEEEEcCCC----------------Chhhh--hccCCCeEEEcCC--CCCCC------CChHHHHHHHHHH
Q 039151 206 LRRLASYGCQIIVVPSTW----------------PASET--LKLKPDGVLFSNG--PGDPS------AVPYAVAIVKELL 259 (279)
Q Consensus 206 ~r~L~~~G~~v~vvp~~~----------------~~~~i--~~~~~DgIiLSgG--PGdp~------~~~~~i~~Ir~~~ 259 (279)
++.+.+.|++++++..+. +.+++ ...++|.||++|| +..+. ..+...++++++.
T Consensus 22 ~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~ 101 (175)
T 3cne_A 22 LEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFG 101 (175)
T ss_dssp HHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHH
T ss_pred hheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHH
Confidence 343446789998885431 12333 2246899999999 52332 2245778899888
Q ss_pred -CCCCEeeecHHHHHHHHH
Q 039151 260 -GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 260 -~~~PILGICLGhQLLa~A 277 (279)
.++||.+||.|.++|+.|
T Consensus 102 ~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 102 EKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp HTTCEEEEETTHHHHHHHT
T ss_pred HCCCEEEEECHHHHHHHHC
Confidence 799999999999999976
No 50
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=97.33 E-value=0.00035 Score=62.35 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=54.5
Q ss_pred HHHHHHHCCCeEEEEcCCC---------------------------------ChhhhhccCCCeEEEcCCCCCC------
Q 039151 205 ILRRLASYGCQIIVVPSTW---------------------------------PASETLKLKPDGVLFSNGPGDP------ 245 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~~---------------------------------~~~~i~~~~~DgIiLSgGPGdp------ 245 (279)
.++.|++.|++++++..+. +++++...++|+|||.||.+..
T Consensus 47 p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv~~~~~D~livPGG~~~~~~L~~~ 126 (242)
T 3l3b_A 47 VMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNL 126 (242)
T ss_dssp HHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGCCGGGCSEEEECCCHHHHHHHBST
T ss_pred HHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHCCcccCCEEEEcCCcchhhhhhhh
Confidence 4577888999999874321 1122222469999999997631
Q ss_pred --------CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151 246 --------SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 246 --------~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al 278 (279)
...+...++++++. .++|+.+||-|.++|+.|-
T Consensus 127 ~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 127 FDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp TSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred hccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 22367889999988 7999999999999999874
No 51
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=97.30 E-value=0.0003 Score=60.70 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=61.7
Q ss_pred cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC----------------ChhhhhccCCCeEEEcCCCCCCC---C
Q 039151 192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW----------------PASETLKLKPDGVLFSNGPGDPS---A 247 (279)
Q Consensus 192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DgIiLSgGPGdp~---~ 247 (279)
+||+++=+ |+. ...++.|+..|++++++..+- +++++...++|.|||.||.+.+. .
T Consensus 10 ~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l~~ 89 (208)
T 3ot1_A 10 KRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFAD 89 (208)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHHHT
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHHhh
Confidence 47777755 652 345678888999999885431 12232223699999999875432 3
Q ss_pred ChHHHHHHHHHH-CCCCEeeecHHH-HHHHHH
Q 039151 248 VPYAVAIVKELL-GKVPVFGICMGH-QLLGQA 277 (279)
Q Consensus 248 ~~~~i~~Ir~~~-~~~PILGICLGh-QLLa~A 277 (279)
.+..+++++++. .++||.+||-|. .+|+.|
T Consensus 90 ~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 90 STALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp CHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred CHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 467889999988 799999999998 888764
No 52
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=97.28 E-value=0.00068 Score=58.61 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=54.8
Q ss_pred HHHHHHHHCCCeEEEEcCCC-----Ch-----------------------hhhhccCCCeEEEcCCCCCC---CCChHHH
Q 039151 204 NILRRLASYGCQIIVVPSTW-----PA-----------------------SETLKLKPDGVLFSNGPGDP---SAVPYAV 252 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~-----~~-----------------------~~i~~~~~DgIiLSgGPGdp---~~~~~~i 252 (279)
..++.|++.|++++++..+- +. +++....+|+|||.||++.. ...+...
T Consensus 33 ~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~ 112 (224)
T 1u9c_A 33 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQ 112 (224)
T ss_dssp HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHH
Confidence 35677888999999885321 10 11112379999999998743 3346788
Q ss_pred HHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 253 AIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 253 ~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
++|+++. .++||.+||.|.++|+.|
T Consensus 113 ~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 113 YVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 9999988 799999999999999865
No 53
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=97.28 E-value=0.0014 Score=56.60 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=58.3
Q ss_pred EEEEEEc-Cc----hHHHHHHHH--------HCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCC
Q 039151 193 RVIAYDF-GI----KHNILRRLA--------SYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGD 244 (279)
Q Consensus 193 ~I~viD~-G~----k~~I~r~L~--------~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGd 244 (279)
+|+++=+ |+ -...++.|+ +.+++++++..+- +++++....+|.|||.||++.
T Consensus 7 ~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~~ 86 (212)
T 3efe_A 7 KAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTTW 86 (212)
T ss_dssp CEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSCT
T ss_pred EEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCcc
Confidence 4555543 43 234556676 5688888875431 123332337999999999864
Q ss_pred CC-CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 245 PS-AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 245 p~-~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.. ..+..+++++++. .++||.+||-|..+|+.|
T Consensus 87 ~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 87 SEEIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp TSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 32 2356788999888 699999999999999876
No 54
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=97.19 E-value=0.0012 Score=62.16 Aligned_cols=87 Identities=23% Similarity=0.343 Sum_probs=62.9
Q ss_pred ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCC-------------------------------CChhhhhccCCC
Q 039151 191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPST-------------------------------WPASETLKLKPD 234 (279)
Q Consensus 191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~-------------------------------~~~~~i~~~~~D 234 (279)
..||+++=+ |+. ...++.|++.|++++++..+ .+.+++....+|
T Consensus 205 ~~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 284 (396)
T 3uk7_A 205 NKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYD 284 (396)
T ss_dssp CCEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCS
T ss_pred cceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCC
Confidence 357776654 652 34667888899999988432 122333224699
Q ss_pred eEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 235 GVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 235 gIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.|||.||++.. ...+..++++|++. .++|+.+||-|.++|+.|
T Consensus 285 ~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 285 ALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred EEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 99999998622 23467888999988 799999999999999986
No 55
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=97.17 E-value=0.0013 Score=56.55 Aligned_cols=87 Identities=17% Similarity=0.149 Sum_probs=58.1
Q ss_pred ccEEEEEEc-Cch----HHHHHHHHHCC------CeEEEEcCCC--------------ChhhhhccCCCeEEEcCCCCCC
Q 039151 191 TYRVIAYDF-GIK----HNILRRLASYG------CQIIVVPSTW--------------PASETLKLKPDGVLFSNGPGDP 245 (279)
Q Consensus 191 ~~~I~viD~-G~k----~~I~r~L~~~G------~~v~vvp~~~--------------~~~~i~~~~~DgIiLSgGPGdp 245 (279)
.++|+++=+ |+. ...++.|+..+ +++.++..+- +++++...++|.|||.||++..
T Consensus 5 ~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~~~~ 84 (202)
T 3gra_A 5 PYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGLRTP 84 (202)
T ss_dssp CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCTTCC
T ss_pred cEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCCchh
Confidence 356777655 552 22344454432 7777774431 1222222479999999998754
Q ss_pred CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 246 SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 246 ~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
...+..+++++++. .++++.+||-|..+|+.|
T Consensus 85 ~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 85 LKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp SCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred hccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 32267888999888 699999999999999986
No 56
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=97.12 E-value=0.0022 Score=65.27 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=64.9
Q ss_pred ccEEEEE-EcC-ch----HHHHHHHHHCCCeEEEEcCC------CChhhhhccCCCeEEEcCCCCC-------CC---CC
Q 039151 191 TYRVIAY-DFG-IK----HNILRRLASYGCQIIVVPST------WPASETLKLKPDGVLFSNGPGD-------PS---AV 248 (279)
Q Consensus 191 ~~~I~vi-D~G-~k----~~I~r~L~~~G~~v~vvp~~------~~~~~i~~~~~DgIiLSgGPGd-------p~---~~ 248 (279)
+.+|+|+ .-| +. ..+.+.|++.|+.|+++-.. .++++.....||+|||.||+.. |. ..
T Consensus 537 grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~ 616 (688)
T 3ej6_A 537 TLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPA 616 (688)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCT
T ss_pred CCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhccC
Confidence 4578766 336 43 44678899999999999532 2344444457999999999643 22 23
Q ss_pred hHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 249 PYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 249 ~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
+..+++|+++. .+|||..||-|-|+|..|
T Consensus 617 ~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 617 GRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp THHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred HHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 57889999999 799999999999999875
No 57
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=97.08 E-value=0.0019 Score=60.74 Aligned_cols=86 Identities=22% Similarity=0.275 Sum_probs=61.7
Q ss_pred cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC-------------------------------ChhhhhccCCCe
Q 039151 192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW-------------------------------PASETLKLKPDG 235 (279)
Q Consensus 192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~Dg 235 (279)
+||+++=+ |+. ...++.|++.|++++++..+. +++++....+|.
T Consensus 13 ~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 92 (396)
T 3uk7_A 13 RTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYDG 92 (396)
T ss_dssp CEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCSE
T ss_pred CeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCCE
Confidence 46766644 552 335678899999999885431 122222246999
Q ss_pred EEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 236 VLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 236 IiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
||+.||.+.. ...+..+++++++. .++|+.+||-|.++|+.|
T Consensus 93 livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 93 LVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp EEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred EEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 9999997621 23467888999988 799999999999999976
No 58
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=97.07 E-value=0.00033 Score=62.74 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=39.3
Q ss_pred cCCCeEEEcCCCCCC---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 231 LKPDGVLFSNGPGDP---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.+||+|||.||.|.. ...+...++++++. .++||.+||.|.++|+.|
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 469999999998753 23467888999988 799999999999999875
No 59
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=96.88 E-value=0.0025 Score=60.32 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=61.7
Q ss_pred ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCCC-----------------hhhhhccCCCeEEEcCCCCCC--C
Q 039151 191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTWP-----------------ASETLKLKPDGVLFSNGPGDP--S 246 (279)
Q Consensus 191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~~-----------------~~~i~~~~~DgIiLSgGPGdp--~ 246 (279)
.++|+++=+ |+. ...++.|+..|+++.++..+-. ++++....+|.|||+||++.. .
T Consensus 10 mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~~l~ 89 (365)
T 3fse_A 10 KKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPDKMR 89 (365)
T ss_dssp -CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHHHHT
T ss_pred ceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchhhcc
Confidence 357777755 552 3456788889999988743211 122212258999999998521 2
Q ss_pred CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 247 AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 247 ~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
..+..+++++++. .++||.+||-|..+|+.|
T Consensus 90 ~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 90 RNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp TCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 3467889999988 799999999999999975
No 60
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=96.85 E-value=0.00066 Score=59.99 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=38.6
Q ss_pred cCCCeEEEcCCCCCC---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 231 LKPDGVLFSNGPGDP---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.++|+|||.||.+.. ...+...++++++. .++||.+||.|-.+|+.|
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 368999999998743 23467888999988 799999999999998865
No 61
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=96.81 E-value=0.0018 Score=66.38 Aligned_cols=86 Identities=15% Similarity=0.055 Sum_probs=62.4
Q ss_pred ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCC--CCC
Q 039151 191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDP--SAV 248 (279)
Q Consensus 191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp--~~~ 248 (279)
+.+|+|+=. |+. ...++.|++.|++|+++.... ++++.....+|+|||.|| +.. ...
T Consensus 600 grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~Lr~d 678 (753)
T 3ttv_A 600 GRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADIADN 678 (753)
T ss_dssp TCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGTTTC
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHhhhC
Confidence 457776633 653 456788999999999885321 122333346899999999 422 234
Q ss_pred hHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 249 PYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 249 ~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
+..+++|+++. .++||.+||-|-++|+.|
T Consensus 679 ~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 679 GDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp HHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred HHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 67899999999 799999999999999875
No 62
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=96.80 E-value=0.00067 Score=60.52 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=39.3
Q ss_pred cCCCeEEEcCCCCCC---CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 231 LKPDGVLFSNGPGDP---SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp---~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.++|+|||+||.+.. ...+...++++++. .++||.+||-|-.+|+.|
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 469999999998743 23467889999988 799999999999999865
No 63
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=96.51 E-value=0.0053 Score=62.48 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=63.4
Q ss_pred ccEEEEEE---cCch----HHHHHHHHHCCCeEEEEcCCC------ChhhhhccCCCeEEEcCCCCC-------------
Q 039151 191 TYRVIAYD---FGIK----HNILRRLASYGCQIIVVPSTW------PASETLKLKPDGVLFSNGPGD------------- 244 (279)
Q Consensus 191 ~~~I~viD---~G~k----~~I~r~L~~~G~~v~vvp~~~------~~~~i~~~~~DgIiLSgGPGd------------- 244 (279)
+++|+|+= -|+. ..+.+.|++.|++|+++-... ++++.....+|+|||.||...
T Consensus 529 g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~ 608 (688)
T 2iuf_A 529 GLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSA 608 (688)
T ss_dssp TCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCT
T ss_pred CCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccccc
Confidence 45777663 3542 346788999999999985422 233333457999999999533
Q ss_pred ---CC---CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 245 ---PS---AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 245 ---p~---~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
+. .....+++++++. .+|||..||-|-++|..|
T Consensus 609 ~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 609 GSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp TSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred ccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 32 2357889999998 699999999999999865
No 64
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=96.46 E-value=0.0044 Score=63.40 Aligned_cols=88 Identities=11% Similarity=0.087 Sum_probs=62.8
Q ss_pred ccEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCCCCCC---C
Q 039151 191 TYRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGPGDPS---A 247 (279)
Q Consensus 191 ~~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGPGdp~---~ 247 (279)
+++|+++=+ |+. ...++.|...|++++++.... +++++....+|+|||.||.+.+. .
T Consensus 534 ~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~~ 613 (715)
T 1sy7_A 534 SRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSK 613 (715)
T ss_dssp TCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHT
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhcc
Confidence 357887755 652 346678888999999885421 11222123589999999854332 3
Q ss_pred ChHHHHHHHHHH-CCCCEeeecHHHHHHHHHc
Q 039151 248 VPYAVAIVKELL-GKVPVFGICMGHQLLGQAL 278 (279)
Q Consensus 248 ~~~~i~~Ir~~~-~~~PILGICLGhQLLa~Al 278 (279)
.+..+++|+++. .++||.+||-|..+|+.|+
T Consensus 614 ~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~Al 645 (715)
T 1sy7_A 614 NGRALHWIREAFGHLKAIGATGEAVDLVAKAI 645 (715)
T ss_dssp CHHHHHHHHHHHHTTCEEEEETTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCEEEEECHHHHHHHHcc
Confidence 456888999988 7999999999999999883
No 65
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=96.41 E-value=0.007 Score=54.14 Aligned_cols=85 Identities=14% Similarity=0.207 Sum_probs=59.9
Q ss_pred cEEEEEEc-Cch----HHHHHHH-HHCCCeEEEEcCCC---------------ChhhhhccCCCeEEEcCCC-CCC--CC
Q 039151 192 YRVIAYDF-GIK----HNILRRL-ASYGCQIIVVPSTW---------------PASETLKLKPDGVLFSNGP-GDP--SA 247 (279)
Q Consensus 192 ~~I~viD~-G~k----~~I~r~L-~~~G~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgGP-Gdp--~~ 247 (279)
++|+++=+ |+. ...++.| +..|+++.++..+- +++++. ..+|.|||.||. |.. ..
T Consensus 24 ~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~l~~ 102 (253)
T 3ewn_A 24 EQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLAAAS 102 (253)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHHHTT
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhhhcc
Confidence 57887765 652 2355667 45689998885431 112222 246999999987 632 34
Q ss_pred ChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 248 VPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 248 ~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.+..+++|+++. .+++|.+||-|..+|+.|
T Consensus 103 ~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 103 DAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp CHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 567889999988 699999999999999876
No 66
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=96.29 E-value=0.0047 Score=53.26 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=38.6
Q ss_pred CCCeEEEcCCCCCC----CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 232 KPDGVLFSNGPGDP----SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 232 ~~DgIiLSgGPGdp----~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
++|.|||.||.+.. ...+..++++|++. .++++.+||-|..+|+.|
T Consensus 74 ~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 74 FTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 69999999887532 23567889999988 799999999999999986
No 67
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=95.96 E-value=0.0043 Score=56.51 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=38.5
Q ss_pred cCCCeEEEcCCCCCCC---CChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 231 LKPDGVLFSNGPGDPS---AVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.++|+|||.||+|... ..+...++|+++. .+++|.+||.|-.+|+.|
T Consensus 144 ~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a 194 (291)
T 1n57_A 144 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLAL 194 (291)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred ccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhh
Confidence 4689999999987542 2456888999988 799999999999988765
No 68
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=95.65 E-value=0.011 Score=51.81 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=39.0
Q ss_pred CCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 232 KPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 232 ~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.+|.|||.||+|.. ...+..+++++++. .+++|.+||-|..+|+.|
T Consensus 65 ~~D~livpGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 65 PLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp CCSEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred cCCEEEECCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 69999999998742 23567889999998 699999999999999875
No 69
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=94.89 E-value=0.011 Score=51.02 Aligned_cols=46 Identities=15% Similarity=0.328 Sum_probs=38.0
Q ss_pred CCCeEEEcCCCCCC--CCChHHHHHHHHHH-CCCCEeeecHHHHHHHHH
Q 039151 232 KPDGVLFSNGPGDP--SAVPYAVAIVKELL-GKVPVFGICMGHQLLGQA 277 (279)
Q Consensus 232 ~~DgIiLSgGPGdp--~~~~~~i~~Ir~~~-~~~PILGICLGhQLLa~A 277 (279)
.+|.|||.||++.. ...+..+++|+++. .+++|.+||-|..+|+.|
T Consensus 65 ~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 65 IEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp SEEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred CCCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 47999999998632 23467889999988 699999999999999875
No 70
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=94.36 E-value=0.027 Score=49.74 Aligned_cols=83 Identities=22% Similarity=0.209 Sum_probs=52.5
Q ss_pred ccEEEEEEc-Cch----HHHHHHHHHCC--CeEEEEcCCC---------------ChhhhhccCCCeEEEcCC-CCCC--
Q 039151 191 TYRVIAYDF-GIK----HNILRRLASYG--CQIIVVPSTW---------------PASETLKLKPDGVLFSNG-PGDP-- 245 (279)
Q Consensus 191 ~~~I~viD~-G~k----~~I~r~L~~~G--~~v~vvp~~~---------------~~~~i~~~~~DgIiLSgG-PGdp-- 245 (279)
.++|+++=+ |+. ...++.|+..+ +++.++. +- ++++ ...+|.|||+|| +|..
T Consensus 20 ~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~--~~~~D~liVPGG~~g~~~l 96 (236)
T 3bhn_A 20 MYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSE--VKEQDVVLITSGYRGIPAA 96 (236)
T ss_dssp CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGG--GGGCSEEEECCCTTHHHHH
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCccccc--ccCCCEEEEcCCccCHhhh
Confidence 456777755 552 23455565544 6777664 21 1222 136899999999 6642
Q ss_pred CCChHHHHHHHHHHCCC-CEeeecHHHHHHHHH
Q 039151 246 SAVPYAVAIVKELLGKV-PVFGICMGHQLLGQA 277 (279)
Q Consensus 246 ~~~~~~i~~Ir~~~~~~-PILGICLGhQLLa~A 277 (279)
...+..++++ ..-.++ +|.+||-|..+|+.|
T Consensus 97 ~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 97 LQDENFMSAL-KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp HTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHT
T ss_pred ccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHc
Confidence 2335566777 332455 999999999999976
No 71
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=94.12 E-value=0.084 Score=44.80 Aligned_cols=83 Identities=18% Similarity=0.109 Sum_probs=52.6
Q ss_pred cEEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC------------------Chhhhh-----ccCCCeEEEcCCCC
Q 039151 192 YRVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW------------------PASETL-----KLKPDGVLFSNGPG 243 (279)
Q Consensus 192 ~~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~------------------~~~~i~-----~~~~DgIiLSgGPG 243 (279)
+||+++=+ |+. ...++.|++.|++++++.... +++++. ..+||.|||+||.+
T Consensus 5 ~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~ 84 (194)
T 4gdh_A 5 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGL 84 (194)
T ss_dssp CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHH
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCch
Confidence 45665543 662 234567888898887653210 111211 12489999999854
Q ss_pred CC---CCChHHHHHHHHHH-C-CCCEeeecHHHHHH
Q 039151 244 DP---SAVPYAVAIVKELL-G-KVPVFGICMGHQLL 274 (279)
Q Consensus 244 dp---~~~~~~i~~Ir~~~-~-~~PILGICLGhQLL 274 (279)
.+ .+.+...+++|++. + ++++..||-|..++
T Consensus 85 ~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 85 GAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTA 120 (194)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGHHH
T ss_pred hHhHhhhCHHHHHHHHHhhhcCCceEEeecccccch
Confidence 33 23567888999887 3 78999999997443
No 72
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=87.54 E-value=0.63 Score=42.44 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=54.7
Q ss_pred cEEEEEEcCc------hHHHHHHHHHCCC-eEEEEcCCC----Chhhhhc--cCCCeEEEcCCCCCCCC------ChHHH
Q 039151 192 YRVIAYDFGI------KHNILRRLASYGC-QIIVVPSTW----PASETLK--LKPDGVLFSNGPGDPSA------VPYAV 252 (279)
Q Consensus 192 ~~I~viD~G~------k~~I~r~L~~~G~-~v~vvp~~~----~~~~i~~--~~~DgIiLSgGPGdp~~------~~~~i 252 (279)
.+|++|-.-. ...+.+.|+++|+ .+.+++... +.+++.+ .+.|+|+++|| |... .....
T Consensus 57 ~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GG--nt~~l~~~l~~t~l~ 134 (291)
T 3en0_A 57 AIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGG--DQLRLCGLLADTPLM 134 (291)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCS--CHHHHHHHHTTCHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCC--CHHHHHHHHHhCCHH
Confidence 5788886632 2346677888999 787776531 1111111 36899999875 4322 13466
Q ss_pred HHHHHHH-CC-CCEeeecHHHHHHH
Q 039151 253 AIVKELL-GK-VPVFGICMGHQLLG 275 (279)
Q Consensus 253 ~~Ir~~~-~~-~PILGICLGhQLLa 275 (279)
+.|+++. ++ .|+.|.|-|.-+++
T Consensus 135 ~~L~~~~~~G~~~~~GtSAGA~i~~ 159 (291)
T 3en0_A 135 DRIRQRVHNGEISLAGTSAGAAVMG 159 (291)
T ss_dssp HHHHHHHHTTSSEEEEETHHHHTTS
T ss_pred HHHHHHHHCCCeEEEEeCHHHHhhh
Confidence 7888887 66 99999999998765
No 73
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=85.15 E-value=1.5 Score=38.67 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=44.3
Q ss_pred hHHHHHHHHHCCCeEEEEcC-----CC--ChhhhhccCCCeEEEcCCCCCCC-----------CChHHHHHHHHHH-CCC
Q 039151 202 KHNILRRLASYGCQIIVVPS-----TW--PASETLKLKPDGVLFSNGPGDPS-----------AVPYAVAIVKELL-GKV 262 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~-----~~--~~~~i~~~~~DgIiLSgGPGdp~-----------~~~~~i~~Ir~~~-~~~ 262 (279)
...+.++|+..++++++++. .. +.+++ .++|.||+++-+.+.- ..+...+.|++++ .+.
T Consensus 42 ~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L--~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GG 119 (256)
T 2gk3_A 42 ATWLLECLRKGGVDIDYMPAHTVQIAFPESIDEL--NRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGG 119 (256)
T ss_dssp CHHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHH--HTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCceEEEEecccchhhCCcChhHH--hcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCC
Confidence 45678899989999999853 22 23444 3799999987664210 0134678888888 688
Q ss_pred CEeee
Q 039151 263 PVFGI 267 (279)
Q Consensus 263 PILGI 267 (279)
.+++|
T Consensus 120 gll~i 124 (256)
T 2gk3_A 120 GLLMI 124 (256)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88888
No 74
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=83.44 E-value=0.23 Score=41.56 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=28.9
Q ss_pred cCCCeEEEcCCCCCCC---CChHHHHHHHHHH-CCCCEeeecH
Q 039151 231 LKPDGVLFSNGPGDPS---AVPYAVAIVKELL-GKVPVFGICM 269 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~---~~~~~i~~Ir~~~-~~~PILGICL 269 (279)
.++|.|||.||---|. +.+...++|.+++ ....+.|||+
T Consensus 83 ~~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 83 GNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp CCEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCCCCEEEEEh
Confidence 4799999999954443 3355667788887 4566999996
No 75
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=83.29 E-value=8.1 Score=36.14 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=51.5
Q ss_pred cEEEEEEc--Cch---HHHHHHHHHC--CCeEEE--EcCCCChhhhhccCCCeEEEcCCCCCCCC-------ChHHHHHH
Q 039151 192 YRVIAYDF--GIK---HNILRRLASY--GCQIIV--VPSTWPASETLKLKPDGVLFSNGPGDPSA-------VPYAVAIV 255 (279)
Q Consensus 192 ~~I~viD~--G~k---~~I~r~L~~~--G~~v~v--vp~~~~~~~i~~~~~DgIiLSgGPGdp~~-------~~~~i~~I 255 (279)
..++.+|. |.. ..+++++++. +..+.. +..-..+..+.+...|+|.+++|||.... ....+..|
T Consensus 113 vdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI 192 (361)
T 3r2g_A 113 ADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCI 192 (361)
T ss_dssp CCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHHH
T ss_pred CCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHHH
Confidence 45788874 432 3467777765 555544 21111233344568999999999875311 11255667
Q ss_pred HHHHC-CCCEe---eecHHHHHH-HHHcC
Q 039151 256 KELLG-KVPVF---GICMGHQLL-GQALG 279 (279)
Q Consensus 256 r~~~~-~~PIL---GICLGhQLL-a~AlG 279 (279)
+++.. ..||+ ||..|-++. ++++|
T Consensus 193 ~~~~~~~~PVIAdGGI~~~~di~kALa~G 221 (361)
T 3r2g_A 193 QDCSRADRSIVADGGIKTSGDIVKALAFG 221 (361)
T ss_dssp HHHTTSSSEEEEESCCCSHHHHHHHHHTT
T ss_pred HHHHHhCCCEEEECCCCCHHHHHHHHHcC
Confidence 76663 23998 787666665 45554
No 76
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=70.95 E-value=14 Score=32.75 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=44.2
Q ss_pred cEEEEEEcCc-----hHHHHHHHHHCCCeEEEEcCCC---ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH
Q 039151 192 YRVIAYDFGI-----KHNILRRLASYGCQIIVVPSTW---PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL 259 (279)
Q Consensus 192 ~~I~viD~G~-----k~~I~r~L~~~G~~v~vvp~~~---~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~ 259 (279)
++|++++ |. ...+.+.|++.|++|++++.+. +.+++ .++|.||+++-+.+ ...+..++.|++++
T Consensus 5 ~~vLiV~-g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L--~~yDvIIl~d~~~~-~l~~~~~~~L~~yV 76 (259)
T 3rht_A 5 TRVLYCG-DTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELL--AKQDLVILSDYPAE-RMTAQAIDQLVTMV 76 (259)
T ss_dssp -CEEEEE-SSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHH--HTCSEEEEESCCGG-GBCHHHHHHHHHHH
T ss_pred ceEEEEC-CCCchhHHHHHHHHHHhCCceEEEecccccccChhHH--hcCCEEEEcCCccc-cCCHHHHHHHHHHH
Confidence 5799997 43 3457778999999999997642 33455 38999999864432 12356778888887
No 77
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=69.72 E-value=4.7 Score=36.43 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=46.3
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeeec
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGIC 268 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGIC 268 (279)
.++|+++-... ...+.++|+++|+++.+.+.. .+.+ .++|.+|.-||=| -.+...+.+...+|++||=
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~--~~~~--~~~DlvIvlGGDG------T~L~aa~~~~~~~PilGIN 98 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQP--SEEL--ENFDFIVSVGGDG------TILRILQKLKRCPPIFGIN 98 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSC--CGGG--GGSSEEEEEECHH------HHHHHHTTCSSCCCEEEEE
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccc--cccc--CCCCEEEEECCCH------HHHHHHHHhCCCCcEEEEC
Confidence 57888886533 356888899999998776532 2222 2689999888855 2333344333229999998
Q ss_pred HHH
Q 039151 269 MGH 271 (279)
Q Consensus 269 LGh 271 (279)
+|+
T Consensus 99 ~G~ 101 (278)
T 1z0s_A 99 TGR 101 (278)
T ss_dssp CSS
T ss_pred CCC
Confidence 774
No 78
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=67.97 E-value=17 Score=27.60 Aligned_cols=77 Identities=12% Similarity=-0.061 Sum_probs=44.3
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChh-hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPAS-ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~-~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI 267 (279)
+++|+++|-.. ...+.+.|...|+++..+.....+- .+....||.||+--.-.+ .+....++.+++.....|++-+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii~l 81 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPG-MDGLALFRKILALDPDLPMILV 81 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEEEE
Confidence 46899998643 3456677888899887654211111 122357999988532211 1112345555555457898876
Q ss_pred c
Q 039151 268 C 268 (279)
Q Consensus 268 C 268 (279)
.
T Consensus 82 s 82 (155)
T 1qkk_A 82 T 82 (155)
T ss_dssp E
T ss_pred E
Confidence 4
No 79
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=67.93 E-value=38 Score=30.29 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=23.3
Q ss_pred ccEEEEEEcCchH--HHHHHHHHCCCeEEEEcC
Q 039151 191 TYRVIAYDFGIKH--NILRRLASYGCQIIVVPS 221 (279)
Q Consensus 191 ~~~I~viD~G~k~--~I~r~L~~~G~~v~vvp~ 221 (279)
.+||.+|-.|-.. .+.+.|.++|++|.+...
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~ 36 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDA 36 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcC
Confidence 3578888887643 377888889999988764
No 80
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=66.39 E-value=26 Score=25.50 Aligned_cols=76 Identities=16% Similarity=0.050 Sum_probs=43.7
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhcc-CCCeEEEcCCCCCCC-C-ChHHHHHHHHHHCCCCE
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKL-KPDGVLFSNGPGDPS-A-VPYAVAIVKELLGKVPV 264 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~-~~DgIiLSgGPGdp~-~-~~~~i~~Ir~~~~~~PI 264 (279)
.++|+++|--. ...+.+.|...|+.+..+.....+ +.+... .||.||+--.- |. . .-..++.+++.....|+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l--~~~~~g~~~~~~l~~~~~~~~i 82 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRF--CQPPDGWQVARVAREIDPNMPI 82 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCC--SSSSCHHHHHHHHHHHCTTCCE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeC--CCCCCHHHHHHHHHhcCCCCCE
Confidence 46899998643 344566778889988765321111 223334 79998884221 22 1 12345555554457888
Q ss_pred eeec
Q 039151 265 FGIC 268 (279)
Q Consensus 265 LGIC 268 (279)
+-+.
T Consensus 83 i~~s 86 (132)
T 2rdm_A 83 VYIS 86 (132)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7664
No 81
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=65.48 E-value=30 Score=25.16 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=44.1
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCC-CChHHHHHHHHHHCCCCEe
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPS-AVPYAVAIVKELLGKVPVF 265 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~-~~~~~i~~Ir~~~~~~PIL 265 (279)
.+++|+++|-.. ...+.+.|.+.|+.+........+ +.+....||.||+.-.- |. +.-..++.+++.....|++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM--PRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-------CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCCCHHHHHHHHHhcCCCCCEE
Confidence 356999998643 345666788889988765321111 22334579999884221 21 1223455555543577887
Q ss_pred eec
Q 039151 266 GIC 268 (279)
Q Consensus 266 GIC 268 (279)
-+.
T Consensus 84 ~~t 86 (130)
T 3eod_A 84 VIS 86 (130)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 82
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=65.03 E-value=19 Score=30.06 Aligned_cols=51 Identities=25% Similarity=0.107 Sum_probs=32.9
Q ss_pred ccEEEEEEcCc-----------hHHHHHHHHHCCCeEE---EEcCCCChhhhh----c--cCCCeEEEcCCCC
Q 039151 191 TYRVIAYDFGI-----------KHNILRRLASYGCQII---VVPSTWPASETL----K--LKPDGVLFSNGPG 243 (279)
Q Consensus 191 ~~~I~viD~G~-----------k~~I~r~L~~~G~~v~---vvp~~~~~~~i~----~--~~~DgIiLSgGPG 243 (279)
.+++.+|-.|- ...+.+.|.+.|+++. ++|-+ .++|. + .++|.||.|||-|
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd--~~~I~~~l~~a~~~~DlVittGG~g 73 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD--LDEIGWAFRVALEVSDLVVSSGGLG 73 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCEEEEcCCCc
Confidence 36788887663 1346778899999875 34433 22222 1 2589999999876
No 83
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=63.39 E-value=21 Score=31.25 Aligned_cols=63 Identities=14% Similarity=0.020 Sum_probs=40.7
Q ss_pred HHHHHHHCCCeEEEEcCCC-----ChhhhhccCCCeEEEcC-CCCCCCCChHHHHHHHHHH-CCCCEeeecHH
Q 039151 205 ILRRLASYGCQIIVVPSTW-----PASETLKLKPDGVLFSN-GPGDPSAVPYAVAIVKELL-GKVPVFGICMG 270 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~~-----~~~~i~~~~~DgIiLSg-GPGdp~~~~~~i~~Ir~~~-~~~PILGICLG 270 (279)
|.+.|.+.|++|++...+. +.+.+ .++|.||+-| ..++. ..+...+.+++++ .+.+++||=-|
T Consensus 37 i~~~L~~~gf~V~~~t~dd~~~~~~~~~L--~~~DvvV~~~~~~~~~-l~~~~~~al~~~V~~GgG~vgiH~a 106 (252)
T 1t0b_A 37 IASYLAEAGFDAATAVLDEPEHGLTDEVL--DRCDVLVWWGHIAHDE-VKDEVVERVHRRVLEGMGLIVLHSG 106 (252)
T ss_dssp HHHHHHHTTCEEEEEESSSGGGGCCHHHH--HTCSEEEEECSSCGGG-SCHHHHHHHHHHHHTTCEEEEEGGG
T ss_pred HHHHHhhCCcEEEEEeccCccccCCHhHH--hcCCEEEEecCCCCCc-CCHHHHHHHHHHHHcCCCEEEEccc
Confidence 4677888999999865222 22223 3899999832 12222 2345677788887 78999999443
No 84
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=61.93 E-value=12 Score=27.96 Aligned_cols=75 Identities=15% Similarity=0.007 Sum_probs=43.3
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCC-ChHHHHHHHHHHCCCCEee
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSA-VPYAVAIVKELLGKVPVFG 266 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~-~~~~i~~Ir~~~~~~PILG 266 (279)
.++|+++|-.. ...+.+.|.+.|+++..+..... .+.+....||.||+-- -|.. ....++.+++.....|++-
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~---~~~~~g~~~~~~l~~~~~~~pii~ 80 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEFPDTKVAV 80 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC---CCCCcHHHHHHHHHHHCCCCCEEE
Confidence 36899998643 34556677788998875542111 1223345799999853 1221 1123444444435788887
Q ss_pred ec
Q 039151 267 IC 268 (279)
Q Consensus 267 IC 268 (279)
+.
T Consensus 81 ls 82 (142)
T 2qxy_A 81 LS 82 (142)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 85
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=61.17 E-value=22 Score=34.05 Aligned_cols=52 Identities=19% Similarity=0.052 Sum_probs=34.4
Q ss_pred ccEEEEEEcCchH--HHHHHHHHCCCeEEEEcCCCCh--hhhh--------------ccCCCeEEEcCCC
Q 039151 191 TYRVIAYDFGIKH--NILRRLASYGCQIIVVPSTWPA--SETL--------------KLKPDGVLFSNGP 242 (279)
Q Consensus 191 ~~~I~viD~G~k~--~I~r~L~~~G~~v~vvp~~~~~--~~i~--------------~~~~DgIiLSgGP 242 (279)
..||.+|-.|-.. .+.+.|.++|++|.+.....+. +.+. -.++|.||+|+|-
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi 91 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAI 91 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTS
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCC
Confidence 3578888886543 3788999999999887543221 1111 0258999998763
No 86
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=60.91 E-value=25 Score=25.98 Aligned_cols=73 Identities=18% Similarity=0.013 Sum_probs=43.1
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHC-CCCEe
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLG-KVPVF 265 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~-~~PIL 265 (279)
.+.+|+++|--. ...+.+.|...|+++..+.....+ +.+....||.|| . |+ .+.-..++.+++. . ..|++
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-~--~~--~~g~~~~~~l~~~-~~~~~ii 90 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-V--SD--KNALSFVSRIKEK-HSSIVVL 90 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE-E--CS--TTHHHHHHHHHHH-STTSEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE-E--cC--ccHHHHHHHHHhc-CCCccEE
Confidence 457999998643 345666788889988755421111 223345799888 2 11 1112455666665 6 78887
Q ss_pred eec
Q 039151 266 GIC 268 (279)
Q Consensus 266 GIC 268 (279)
-+.
T Consensus 91 ~ls 93 (137)
T 2pln_A 91 VSS 93 (137)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 87
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=59.74 E-value=47 Score=28.15 Aligned_cols=71 Identities=10% Similarity=0.211 Sum_probs=40.7
Q ss_pred cEEEEEEcCc--------hHHHHHHHHHCCCeEEEE-cCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHH
Q 039151 192 YRVIAYDFGI--------KHNILRRLASYGCQIIVV-PSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIV 255 (279)
Q Consensus 192 ~~I~viD~G~--------k~~I~r~L~~~G~~v~vv-p~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~I 255 (279)
.+|+++-... ...+.+.+.++|+.+.++ ..+.+.+ .+...++||||+.+. ++.... +.+
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~--~~~~~~---~~~ 79 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAI--DPVELT---DTI 79 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCS--STTTTH---HHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCC--CHHHHH---HHH
Confidence 4666665432 234556777889999884 4443432 223468999999643 222222 334
Q ss_pred HHHH-CCCCEeee
Q 039151 256 KELL-GKVPVFGI 267 (279)
Q Consensus 256 r~~~-~~~PILGI 267 (279)
+++. .++|+.-+
T Consensus 80 ~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 80 NKAVDAGIPIVLF 92 (305)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HHHHHCCCcEEEE
Confidence 4444 57887644
No 88
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=58.49 E-value=41 Score=24.96 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=43.4
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhc-cCCCeEEEcCCCCCCC-C-ChHHHHHHHHHHCCCCE
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLK-LKPDGVLFSNGPGDPS-A-VPYAVAIVKELLGKVPV 264 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~-~~~DgIiLSgGPGdp~-~-~~~~i~~Ir~~~~~~PI 264 (279)
+++|+++|--- ...+.+.|.+.|+++..+.....+ +.+.. ..||.||+--.- |. . ....++.+++. ...|+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l--~~~~~g~~~~~~l~~~-~~~~i 81 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIEL--GEGMDGVQTALAIQQI-SELPV 81 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSC--SSSCCHHHHHHHHHHH-CCCCE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccC--CCCCCHHHHHHHHHhC-CCCCE
Confidence 46899998643 345667788889988765432222 22333 579988884221 21 1 12345556554 67888
Q ss_pred eeec
Q 039151 265 FGIC 268 (279)
Q Consensus 265 LGIC 268 (279)
+-+.
T Consensus 82 i~ls 85 (140)
T 3h5i_A 82 VFLT 85 (140)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7553
No 89
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=58.41 E-value=19 Score=29.24 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=44.1
Q ss_pred ccEEEEEEcCc------hHHHHHHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEEcCCCCC-CCCChHHHHHHHHHH
Q 039151 191 TYRVIAYDFGI------KHNILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNGPGD-PSAVPYAVAIVKELL 259 (279)
Q Consensus 191 ~~~I~viD~G~------k~~I~r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiLSgGPGd-p~~~~~~i~~Ir~~~ 259 (279)
+.+|++.-.+- +.-+...|+..|++|..+..+.+.+++. +.++|.|.||.--.. ....+..++.+++.-
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELG 97 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcC
Confidence 45677664332 2234456788999999887777777654 468999999854321 111233444455432
Q ss_pred -CCCCEe
Q 039151 260 -GKVPVF 265 (279)
Q Consensus 260 -~~~PIL 265 (279)
.++|++
T Consensus 98 ~~~i~v~ 104 (161)
T 2yxb_A 98 ADDIPVV 104 (161)
T ss_dssp CTTSCEE
T ss_pred CCCCEEE
Confidence 245643
No 90
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=58.04 E-value=4.3 Score=36.01 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=41.6
Q ss_pred hHHHHHHHHHCCCeEEEEcCC--------C---ChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeecH
Q 039151 202 KHNILRRLASYGCQIIVVPST--------W---PASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGICM 269 (279)
Q Consensus 202 k~~I~r~L~~~G~~v~vvp~~--------~---~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGICL 269 (279)
...+.++|.++|+++.+.+.. . ..++. ..++|.||..||=| -..+.++.+. .++|+|||=+
T Consensus 23 ~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~~GGDG------T~l~a~~~~~~~~~P~lGI~~ 95 (292)
T 2an1_A 23 HEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEI-GQQADLAVVVGGDG------NMLGAARTLARYDINVIGINR 95 (292)
T ss_dssp HHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHH-HHHCSEEEECSCHH------HHHHHHHHHTTSSCEEEEBCS
T ss_pred HHHHHHHHHHCCCEEEEecchhhhcccccccccchhhc-ccCCCEEEEEcCcH------HHHHHHHHhhcCCCCEEEEEC
Confidence 345788899999998876421 0 11121 24689999998865 3445556555 4789999966
Q ss_pred HH
Q 039151 270 GH 271 (279)
Q Consensus 270 Gh 271 (279)
|+
T Consensus 96 Gt 97 (292)
T 2an1_A 96 GN 97 (292)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 91
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=57.45 E-value=34 Score=28.78 Aligned_cols=60 Identities=13% Similarity=0.280 Sum_probs=37.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+++.++..+.+.+ .+...++||||+.+. ++ ....+.++.+. .++|+.-+
T Consensus 25 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~--~~---~~~~~~~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 25 QAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG--NL---DVLNPWLQKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS--CH---HHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC--Ch---hhhHHHHHHHHHCCCcEEEe
Confidence 446677788999999987654432 223458999999633 21 22334455555 58888654
No 92
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=57.21 E-value=31 Score=26.08 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=44.4
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCCEee
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVPVFG 266 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~PILG 266 (279)
.++|+++|--. ...+.+.|...|+++..+.....+ +.+....||.||+--.- |... ...++.+++.....|++-
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~~~~ii~ 84 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRM--PEMGGEVFLEQVAKSYPDIERVV 84 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSC--SSSCHHHHHHHHHHHCTTSEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCCCHHHHHHHHHHhCCCCcEEE
Confidence 57899998643 344566777789988755421111 22334579999884221 2211 234555555445788876
Q ss_pred ec
Q 039151 267 IC 268 (279)
Q Consensus 267 IC 268 (279)
++
T Consensus 85 ls 86 (154)
T 2rjn_A 85 IS 86 (154)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 93
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=56.86 E-value=41 Score=28.42 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=36.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCC--Chh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTW--PAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~--~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI 267 (279)
..+.+.+.++|+++.++..+. +.+ .+...++||||+.+. ++......++.++ .++|+.-+
T Consensus 25 ~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~--~~~~~~~~~~~~~---~~iPvV~~ 93 (304)
T 3o1i_D 25 YGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTV--DPHAYEHNLKSWV---GNTPVFAT 93 (304)
T ss_dssp HHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCS--STTSSTTTHHHHT---TTSCEEEC
T ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC--ChhHHHHHHHHHc---CCCCEEEe
Confidence 345567778899999987654 422 123458999999743 3332222233332 57887655
No 94
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=56.69 E-value=31 Score=29.41 Aligned_cols=60 Identities=10% Similarity=0.184 Sum_probs=35.9
Q ss_pred HHHHHHHHHCCCeEEEEcCC--CChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPST--WPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~--~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+++.+...+ .+.+ .+...++||||+.+. ++...... ++++. .++|+.-+
T Consensus 23 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~--~~~~~~~~---~~~~~~~giPvV~~ 92 (297)
T 3rot_A 23 QGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP--SDTAFSKS---LQRANKLNIPVIAV 92 (297)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC--CSSTTHHH---HHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC--CHHHHHHH---HHHHHHCCCCEEEE
Confidence 44667778889999988654 2322 233468999999633 33333333 34443 37787544
No 95
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=56.34 E-value=6.1 Score=34.22 Aligned_cols=44 Identities=23% Similarity=0.306 Sum_probs=31.9
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeecHHHHHHHH
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGICMGHQLLGQ 276 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGICLGhQLLa~ 276 (279)
+.|+|.++-|||+..-..--+...|.+. .++|++||+- ++.++.
T Consensus 66 dld~Iav~~GPGsfTGlRiG~~~Ak~La~~~~iPl~gVs~-l~a~a~ 111 (218)
T 2a6a_A 66 DLDVVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNS-FEMTAK 111 (218)
T ss_dssp GCSEEEEECCSSCHHHHHHHHHHHHHHHGGGTCCEEEECH-HHHHHH
T ss_pred HCCEEEEEcCCCchHhHHHHHHHHHHHHHHcCCCEEEeCc-HHHHHh
Confidence 5799999999998765444555666654 5999999995 444443
No 96
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=55.70 E-value=24 Score=26.52 Aligned_cols=60 Identities=13% Similarity=0.064 Sum_probs=34.0
Q ss_pred HHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCC-CCChH--HHHHHHHHH---CCCCEeee
Q 039151 205 ILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDP-SAVPY--AVAIVKELL---GKVPVFGI 267 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp-~~~~~--~i~~Ir~~~---~~~PILGI 267 (279)
|.+.|.+.|+++++++.. .+.+++. ++|.||| +.|--- ...+. ...+++++. .++|+.-+
T Consensus 20 i~~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vi~-g~p~y~~~~~~~~~~~~fl~~l~~~l~~k~~~~~ 86 (137)
T 2fz5_A 20 IEAAVKAAGADVESVRFEDTNVDDVA--SKDVILL-GCPAMGSEELEDSVVEPFFTDLAPKLKGKKVGLF 86 (137)
T ss_dssp HHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEE-ECCCBTTTBCCHHHHHHHHHHHGGGCSSCEEEEE
T ss_pred HHHHHHhCCCeEEEEEcccCCHHHHh--cCCEEEE-EccccCCCCCCHHHHHHHHHHhhhhcCCCEEEEE
Confidence 445566679999988754 3455553 6899999 333210 11123 445555542 56776533
No 97
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=55.41 E-value=24 Score=29.76 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.++..+.+.+.....++||||+.+.. +. ... ++.+. .++|+.-+
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~vdgiI~~~~~--~~--~~~---~~~l~~~~iPvV~~ 86 (277)
T 3cs3_A 28 EGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDWT--FP--TKE---IEKFAERGHSIVVL 86 (277)
T ss_dssp HHHHHHHHTTTCEEEEEESTTTTTCCCTTTCSEEEEECTT--SC--HHH---HHHHHHTTCEEEES
T ss_pred HHHHHHHHHCCCeEEEEeCCCCHHHHhhccccEEEEecCC--CC--HHH---HHHHHhcCCCEEEE
Confidence 4455677789999988865433322222389999997532 11 222 33333 57777544
No 98
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=54.89 E-value=24 Score=25.90 Aligned_cols=77 Identities=14% Similarity=0.060 Sum_probs=43.9
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCC-C--CCC-ChHHHHHHHHHHCCCCE
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPG-D--PSA-VPYAVAIVKELLGKVPV 264 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPG-d--p~~-~~~~i~~Ir~~~~~~PI 264 (279)
++|+++|-.. ...+.+.|.+.|+.+..+.....+ +.+....||.||+--.-. + +.. ....++.+++.....|+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~i 83 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPV 83 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCE
Confidence 5899998643 345666777789988765421111 223345799888843211 0 021 12345555555467898
Q ss_pred eeec
Q 039151 265 FGIC 268 (279)
Q Consensus 265 LGIC 268 (279)
+-+.
T Consensus 84 i~ls 87 (140)
T 2qr3_A 84 VLFT 87 (140)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 99
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=54.47 E-value=51 Score=27.85 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=33.5
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCh-------hhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPA-------SETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~-------~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.+...+.+. +.+...++||||+.+.. +.+ . .++.+. .++|+.-+
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~--~~~--~---~~~~l~~~~iPvV~~ 93 (287)
T 3bbl_A 28 SSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSIN--YND--P---RVQFLLKQKFPFVAF 93 (287)
T ss_dssp HHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCC--TTC--H---HHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecC--CCc--H---HHHHHHhcCCCEEEE
Confidence 44556777889998877543221 12334689999996432 221 2 233333 47887655
No 100
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=54.26 E-value=58 Score=25.27 Aligned_cols=29 Identities=21% Similarity=0.115 Sum_probs=19.9
Q ss_pred cEEEEEEcCc-----hHHHHHHHHHCCCeEEEEc
Q 039151 192 YRVIAYDFGI-----KHNILRRLASYGCQIIVVP 220 (279)
Q Consensus 192 ~~I~viD~G~-----k~~I~r~L~~~G~~v~vvp 220 (279)
..|+||--+- -+.++++|.+.|+++..|.
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVn 38 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVG 38 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEES
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEEC
Confidence 3688875432 2568899999999766553
No 101
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=54.12 E-value=44 Score=24.41 Aligned_cols=76 Identities=17% Similarity=0.080 Sum_probs=44.7
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCCCeEEE-EcCCCCh-hhhhccCCCeEEEcCCCCCC-C-CChHHHHHHHHHHCCCC
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYGCQIIV-VPSTWPA-SETLKLKPDGVLFSNGPGDP-S-AVPYAVAIVKELLGKVP 263 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G~~v~v-vp~~~~~-~~i~~~~~DgIiLSgGPGdp-~-~~~~~i~~Ir~~~~~~P 263 (279)
..++|+++|--. ...+.+.|.+.|+++.. ......+ +.+....||.||+--.- | . +....++.+++. ...|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~--~~~~~g~~~~~~l~~~-~~~~ 84 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIML--CGALDGVETAARLAAG-CNLP 84 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC--CSSSCHHHHHHHHHHH-SCCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCC--CCCCCHHHHHHHHHhC-CCCC
Confidence 357899998643 34456677778998873 4321111 22334579999984221 2 1 112355566655 7888
Q ss_pred Eeeec
Q 039151 264 VFGIC 268 (279)
Q Consensus 264 ILGIC 268 (279)
++-++
T Consensus 85 ii~ls 89 (140)
T 3cg0_A 85 IIFIT 89 (140)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88664
No 102
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=53.68 E-value=58 Score=27.34 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=35.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+++.+.....+.+ .+...++||||+.+. ++.... +.++.+. .++|+.-+
T Consensus 22 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~--~~~~~~---~~~~~~~~~~iPvV~~ 89 (290)
T 2fn9_A 22 ETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPT--DADGSI---ANVKRAKEAGIPVFCV 89 (290)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS--CTTTTH---HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC--ChHHHH---HHHHHHHHCCCeEEEE
Confidence 445667788999998876544332 223468999999743 232222 2334443 57887654
No 103
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=53.65 E-value=23 Score=28.75 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=19.5
Q ss_pred cEEEEEEcCchHH-------HHHHHHHCCCeEEEEcC
Q 039151 192 YRVIAYDFGIKHN-------ILRRLASYGCQIIVVPS 221 (279)
Q Consensus 192 ~~I~viD~G~k~~-------I~r~L~~~G~~v~vvp~ 221 (279)
++|++|-+. ..+ +.+.|.+.|++++++..
T Consensus 5 mkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l 40 (199)
T 2zki_A 5 PNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRV 40 (199)
T ss_dssp CEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred cEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEeh
Confidence 578888765 322 44556667999988854
No 104
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=53.39 E-value=10 Score=34.10 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=36.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCCC------------------hhh-----hhccCCCeEEEcCCCCCCCCChHHHHHHHHHH
Q 039151 203 HNILRRLASYGCQIIVVPSTWP------------------ASE-----TLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL 259 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~------------------~~~-----i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~ 259 (279)
..+.++|.++|+++.+...... ... ....++|.||.-||-|. ....++.+.
T Consensus 23 ~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GGDGT------~l~a~~~~~ 96 (307)
T 1u0t_A 23 RRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDGT------FLRAAELAR 96 (307)
T ss_dssp HHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEECHHH------HHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeCCHH------HHHHHHHhc
Confidence 4577888999999877643211 110 11235788888777552 344445444
Q ss_pred -CCCCEeeecHHH
Q 039151 260 -GKVPVFGICMGH 271 (279)
Q Consensus 260 -~~~PILGICLGh 271 (279)
.++|++||=+|+
T Consensus 97 ~~~~pvlgi~~G~ 109 (307)
T 1u0t_A 97 NASIPVLGVNLGR 109 (307)
T ss_dssp HHTCCEEEEECSS
T ss_pred cCCCCEEEEeCCC
Confidence 478999997663
No 105
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=53.36 E-value=36 Score=29.66 Aligned_cols=51 Identities=24% Similarity=0.157 Sum_probs=34.8
Q ss_pred ccEEEEEEcC-----c-hHHHHHHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEEcCC
Q 039151 191 TYRVIAYDFG-----I-KHNILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNG 241 (279)
Q Consensus 191 ~~~I~viD~G-----~-k~~I~r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiLSgG 241 (279)
+.+|++.-.+ . +.-+...|+..|++|..+-.+.+.+++. +.+||.|.+|.-
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l 183 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTAL 183 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECC
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEee
Confidence 3467766442 1 2334456788999998887667766653 368999999965
No 106
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=52.85 E-value=55 Score=27.41 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=35.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.++|+.+.++..+.+.+ .+...++||||+.+... .+.++.+. .++|+.-+
T Consensus 27 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--------~~~~~~l~~~~iPvV~i 91 (276)
T 3jy6_A 27 KGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--------PQTVQEILHQQMPVVSV 91 (276)
T ss_dssp HHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--------HHHHHHHHTTSSCEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--------HHHHHHHHHCCCCEEEE
Confidence 345567778899999887654432 22346899999974321 23444444 47887654
No 107
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=52.81 E-value=43 Score=28.18 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhh-------hhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASE-------TLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~-------i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.++..+.+.+. +...++||||+.+... . . +.++.+. .++|+.-+
T Consensus 33 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~--~--~---~~~~~l~~~~iPvV~~ 98 (292)
T 3k4h_A 33 RGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRE--N--D---RIIQYLHEQNFPFVLI 98 (292)
T ss_dssp HHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBT--T--C---HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC--C--h---HHHHHHHHCCCCEEEE
Confidence 3455677888999988765443221 2245899999975322 1 1 2333333 47777543
No 108
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=52.45 E-value=56 Score=27.36 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhh-------hhccCCCeEEEcCCCCC-CCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASE-------TLKLKPDGVLFSNGPGD-PSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~-------i~~~~~DgIiLSgGPGd-p~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.++..+.+.+. +...++||||+.+.-.+ +.. ..+.++++. .++|+.-+
T Consensus 35 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~~~~~iPvV~~ 105 (298)
T 3tb6_A 35 RGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTP---NIGYYLNLEKNGIPFAMI 105 (298)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCT---THHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCC---cHHHHHHHHhcCCCEEEE
Confidence 4466677889999998876544321 23468999999754221 111 223444444 57887654
No 109
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=52.37 E-value=43 Score=24.74 Aligned_cols=75 Identities=15% Similarity=0.056 Sum_probs=43.8
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhh-hh--ccCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCCEe
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASE-TL--KLKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVPVF 265 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~-i~--~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~PIL 265 (279)
++|+++|--. ...+.+.|.+.|+.+........+-+ +. ...||.||+--.- |... -..++.+++.....|++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~~~~ii 81 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKM--PKLSGMDILREIKKITPHMAVI 81 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCC--SSSCHHHHHHHHHHHCTTCEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC--CCCcHHHHHHHHHHhCCCCeEE
Confidence 5899998643 34566678888998876643222222 22 3479999884221 2222 23455555544577887
Q ss_pred eec
Q 039151 266 GIC 268 (279)
Q Consensus 266 GIC 268 (279)
-+.
T Consensus 82 ~ls 84 (143)
T 3jte_A 82 ILT 84 (143)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 110
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=52.14 E-value=32 Score=23.96 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=42.0
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHH--CCCCEe
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELL--GKVPVF 265 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~--~~~PIL 265 (279)
++|+++|-.. ...+.+.|...|+++..+.....+ +.+....||.+|+.-.- |... ...++.+++.. ...|++
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~--~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST--TCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCC--CCCCHHHHHHHHHhccccCCCCEE
Confidence 4789998643 345667788889988765421111 12334579999885321 2211 23445555443 467776
Q ss_pred ee
Q 039151 266 GI 267 (279)
Q Consensus 266 GI 267 (279)
-+
T Consensus 80 ~~ 81 (119)
T 2j48_A 80 LF 81 (119)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 111
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=51.87 E-value=45 Score=28.02 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=37.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+++.++..+.+.+ .+...++||||+.+. ++.... +.++++. .++|+.-+
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~--~~~~~~---~~~~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 28 NAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTL--DDVYIG---SAIEEAKKAGIPVFAI 95 (293)
T ss_dssp HHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS--CTTTTH---HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC--ChHHHH---HHHHHHHHcCCCEEEe
Confidence 345567788999999987665432 223458999999743 233222 3344444 58887655
No 112
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=51.82 E-value=38 Score=25.96 Aligned_cols=69 Identities=10% Similarity=-0.005 Sum_probs=43.6
Q ss_pred ccEEEEEEc-CchHH-----HHHHHHHCCCeEEEE--cCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHC--
Q 039151 191 TYRVIAYDF-GIKHN-----ILRRLASYGCQIIVV--PSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLG-- 260 (279)
Q Consensus 191 ~~~I~viD~-G~k~~-----I~r~L~~~G~~v~vv--p~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~-- 260 (279)
.++|+++=. |+..+ +-+...++|.++.+. +... +++.. .++|.|+| || . .....+.+++...
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~-~~~~~-~~~DvvLL--gP---Q-V~y~~~~ik~~~~~~ 77 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA-HYDIM-GVYDLIIL--AP---Q-VRSYYREMKVDAERL 77 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS-CTTTG-GGCSEEEE--CG---G-GGGGHHHHHHHHTTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH-HHhhc-cCCCEEEE--Ch---H-HHHHHHHHHHHhhhc
Confidence 578887754 65433 445666789999885 3332 33332 36999999 44 3 3455667777763
Q ss_pred CCCEeee
Q 039151 261 KVPVFGI 267 (279)
Q Consensus 261 ~~PILGI 267 (279)
++|+.=|
T Consensus 78 ~ipV~vI 84 (108)
T 3nbm_A 78 GIQIVAT 84 (108)
T ss_dssp TCEEEEC
T ss_pred CCcEEEe
Confidence 7898755
No 113
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=51.82 E-value=24 Score=26.37 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=44.1
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHH--HHCCCC
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKE--LLGKVP 263 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~--~~~~~P 263 (279)
..++|+++|-.. ...+.+.|...|+++..+.....+ +.+....||.||+--.- |... -..++.+++ .....|
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANM--PKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCC--CCCCHHHHHHHHHcCcccCCCC
Confidence 357899998643 455667788889887755421111 22333579999984221 2221 234455554 224688
Q ss_pred Eeeec
Q 039151 264 VFGIC 268 (279)
Q Consensus 264 ILGIC 268 (279)
++-+.
T Consensus 85 ii~ls 89 (147)
T 2zay_A 85 VIALS 89 (147)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88664
No 114
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=51.73 E-value=35 Score=31.37 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=49.1
Q ss_pred cEEEEEEc--Cch---HHHHHHHHHC--CCeEEEEcCCCChhh---hhccCCCeEEEcCCCCCCCC--------C--hHH
Q 039151 192 YRVIAYDF--GIK---HNILRRLASY--GCQIIVVPSTWPASE---TLKLKPDGVLFSNGPGDPSA--------V--PYA 251 (279)
Q Consensus 192 ~~I~viD~--G~k---~~I~r~L~~~--G~~v~vvp~~~~~~~---i~~~~~DgIiLSgGPGdp~~--------~--~~~ 251 (279)
..++.+|. |.. ...++++++. +..+.+ ..-.+.++ ..+...|+|++++|||.-.. . ...
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~-g~v~t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~ 211 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMA-GNVVTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSA 211 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHH
T ss_pred CCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEE-EeCCCHHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCccHHHH
Confidence 45666774 433 2356667665 555442 21123333 34568999999999874210 0 122
Q ss_pred HHHHHHHH--CCCCEe---eecHHHHHH-HHHcC
Q 039151 252 VAIVKELL--GKVPVF---GICMGHQLL-GQALG 279 (279)
Q Consensus 252 i~~Ir~~~--~~~PIL---GICLGhQLL-a~AlG 279 (279)
+..+.+.. .++|++ ||--|-++. |+++|
T Consensus 212 l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalG 245 (351)
T 2c6q_A 212 VMECADAAHGLKGHIISDGGCSCPGDVAKAFGAG 245 (351)
T ss_dssp HHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcC
Confidence 33344444 379998 788888877 44554
No 115
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=50.90 E-value=67 Score=23.23 Aligned_cols=75 Identities=16% Similarity=0.077 Sum_probs=43.2
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEE-EEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCCEee
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQII-VVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVPVFG 266 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~-vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~PILG 266 (279)
++|+++|--. ...+.+.|.+.|+.+. .+.....+ +.+....||.||+.-.- |... -..++.+++.....|++-
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI--PGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCC--CCCChHHHHHHHHhcCCCCeEEE
Confidence 5899998643 3456677888897776 44332332 23344689999884221 2222 234455554435678765
Q ss_pred ec
Q 039151 267 IC 268 (279)
Q Consensus 267 IC 268 (279)
++
T Consensus 80 ~s 81 (134)
T 3f6c_A 80 VS 81 (134)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 116
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=50.66 E-value=2.7 Score=27.30 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=13.5
Q ss_pred CEeeecHHHHHHHHHcC
Q 039151 263 PVFGICMGHQLLGQALG 279 (279)
Q Consensus 263 PILGICLGhQLLa~AlG 279 (279)
-..|-|+|.|+|..|-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T 1ehs_A 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SSCCTTTTTHHHHTTTT
T ss_pred CccccccchhHhhhccc
Confidence 45788999999987654
No 117
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=49.48 E-value=45 Score=24.48 Aligned_cols=77 Identities=8% Similarity=-0.011 Sum_probs=45.0
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHH--HHCCCCE
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKE--LLGKVPV 264 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~--~~~~~PI 264 (279)
.++|+++|--. ...+.+.|.+.|+++..+..... .+.+....||.||+--. -|... -..++.+++ .....|+
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~~~i 83 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPDQDGVSLIRALRRDSRTRDLAI 83 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHTSGGGTTCEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCcccCCCCE
Confidence 46899998643 34456678888998766643211 12233467999988422 12222 234555555 2357888
Q ss_pred eeecH
Q 039151 265 FGICM 269 (279)
Q Consensus 265 LGICL 269 (279)
+-+.-
T Consensus 84 i~~s~ 88 (140)
T 3grc_A 84 VVVSA 88 (140)
T ss_dssp EEECT
T ss_pred EEEec
Confidence 86653
No 118
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=48.90 E-value=45 Score=26.50 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=23.8
Q ss_pred HHHHHHHHCCCeEEEEcCC-CChhhhhc--cCCCeEEE
Q 039151 204 NILRRLASYGCQIIVVPST-WPASETLK--LKPDGVLF 238 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~-~~~~~i~~--~~~DgIiL 238 (279)
.|.+.|.+.|+++.+++.. .+.+++.. .++|+|||
T Consensus 20 ~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~ 57 (161)
T 3hly_A 20 AIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVL 57 (161)
T ss_dssp HHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEE
Confidence 3556677789999888754 34555432 36899999
No 119
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=48.76 E-value=7.9 Score=33.48 Aligned_cols=38 Identities=26% Similarity=0.593 Sum_probs=28.5
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeecH
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGICM 269 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGICL 269 (279)
+.|+|.++-|||+..-..--+...|.+- .++|+.||+-
T Consensus 56 dld~Iav~~GPGsfTglRig~~~AkgLa~~~~iPl~gVst 95 (213)
T 3r6m_A 56 DLDALAFGRGPGSFTGVRIGIGIAQGLAFGAELPMIGVST 95 (213)
T ss_dssp TCSEEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred HccEEEEecCCCchhhHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 5799999999998764444455555554 6999999984
No 120
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=48.24 E-value=40 Score=25.10 Aligned_cols=77 Identities=6% Similarity=0.016 Sum_probs=43.7
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCC-CeEEEEcCCC-Chhhhhc--cCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCC
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYG-CQIIVVPSTW-PASETLK--LKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKV 262 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G-~~v~vvp~~~-~~~~i~~--~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~ 262 (279)
.+.+|+++|-.. ...+.+.|.+.| +++....... ....+.. ..||.||+--.- |... -..++.+++.....
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~~~~~ 96 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAA--LDTAELAAIEKLSRLHPGL 96 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTT--CCHHHHHHHHHHHHHCTTC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCC--CCccHHHHHHHHHHhCCCC
Confidence 457999998643 345666788888 8887764322 1222333 679988884221 2111 12344444433577
Q ss_pred CEeeec
Q 039151 263 PVFGIC 268 (279)
Q Consensus 263 PILGIC 268 (279)
|++-+.
T Consensus 97 ~ii~lt 102 (146)
T 4dad_A 97 TCLLVT 102 (146)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 877654
No 121
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=48.10 E-value=52 Score=28.26 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=36.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.++|+++.+...+.+.+ .+...++||||+.+- ++.. ..+.++++. .++|+.-+
T Consensus 23 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~--~~~~---~~~~~~~~~~~giPvV~~ 90 (330)
T 3uug_A 23 NNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASI--DGTT---LSDVLKQAGEQGIKVIAY 90 (330)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS--SGGG---GHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcC--Cchh---HHHHHHHHHHCCCCEEEE
Confidence 446677888999999887654432 223458999999632 2222 223444444 57777544
No 122
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=47.71 E-value=41 Score=27.31 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=33.3
Q ss_pred ccEEEEEEcCc-------------h---HHHHHHHHHCCCeEE---EEcCCCC-h-hhh---h-ccCCCeEEEcCCCC
Q 039151 191 TYRVIAYDFGI-------------K---HNILRRLASYGCQII---VVPSTWP-A-SET---L-KLKPDGVLFSNGPG 243 (279)
Q Consensus 191 ~~~I~viD~G~-------------k---~~I~r~L~~~G~~v~---vvp~~~~-~-~~i---~-~~~~DgIiLSgGPG 243 (279)
.+||+||-.|- . ..+.+.|.+.|+++. ++|-+.. . +.+ . ..++|.||.+||-|
T Consensus 15 ~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g 92 (178)
T 3iwt_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred CCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 57888886542 1 236678899999875 3443321 1 111 1 24689999999876
No 123
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=47.56 E-value=85 Score=26.49 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+... ... .++++. .++|+.-+
T Consensus 36 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----~~~---~~~~l~~~~iPvV~~ 101 (289)
T 2fep_A 36 RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNI----TDE---HVAEFKRSPVPIVLA 101 (289)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCC----CHH---HHHHHHHSSSCEEEE
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCC----CHH---HHHHHHhcCCCEEEE
Confidence 445567788999998876544322 22346899999975321 122 233333 57887655
No 124
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=47.50 E-value=52 Score=26.40 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=20.2
Q ss_pred cEEEEEEcCc---hH----HHHHHHHHCCCeEEEEcCC
Q 039151 192 YRVIAYDFGI---KH----NILRRLASYGCQIIVVPST 222 (279)
Q Consensus 192 ~~I~viD~G~---k~----~I~r~L~~~G~~v~vvp~~ 222 (279)
++|++|-+.. .. .+.+.+.+.|++++++...
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 43 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVP 43 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCC
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 3788887643 22 3455666679999888653
No 125
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=47.47 E-value=52 Score=25.00 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=44.2
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCCCeEE-EEcCCCC-hhhhhcc--CCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCC
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYGCQII-VVPSTWP-ASETLKL--KPDGVLFSNGPGDPSAV-PYAVAIVKELLGKV 262 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G~~v~-vvp~~~~-~~~i~~~--~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~ 262 (279)
..++|+++|--. ...+.+.|.+.|+++. .+..... .+.+... .||.||+--.- |... -..++.+++.....
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l--~~~~g~~~~~~lr~~~~~~ 112 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM--PKMDGITCLSNIMEFDKNA 112 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC--SSSCHHHHHHHHHHHCTTC
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC--CCccHHHHHHHHHhhCCCC
Confidence 346899998643 3445667888899886 4432111 1223334 78988884221 2222 23455566554678
Q ss_pred CEeeec
Q 039151 263 PVFGIC 268 (279)
Q Consensus 263 PILGIC 268 (279)
|++-++
T Consensus 113 ~ii~ls 118 (157)
T 3hzh_A 113 RVIMIS 118 (157)
T ss_dssp CEEEEE
T ss_pred cEEEEe
Confidence 887665
No 126
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=47.13 E-value=21 Score=29.25 Aligned_cols=52 Identities=25% Similarity=0.130 Sum_probs=33.8
Q ss_pred ccEEEEEEcCc-----------hHHHHHHHHHCCCeEE---EEcCCCC-h-hhhhc---cCCCeEEEcCCCC
Q 039151 191 TYRVIAYDFGI-----------KHNILRRLASYGCQII---VVPSTWP-A-SETLK---LKPDGVLFSNGPG 243 (279)
Q Consensus 191 ~~~I~viD~G~-----------k~~I~r~L~~~G~~v~---vvp~~~~-~-~~i~~---~~~DgIiLSgGPG 243 (279)
++||.+|-.|- ...+...|++.|+++. ++|.+ . . +.+.+ .++|.||.|||-|
T Consensus 7 ~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s 77 (164)
T 3pzy_A 7 TRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTG 77 (164)
T ss_dssp CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 46888887663 1346677889999875 55544 2 1 11211 3699999999875
No 127
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=47.09 E-value=50 Score=23.86 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=42.6
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCC--eEEEEcCCCChhh-hhc-------cCCCeEEEcCCCCCCCCC-hHHHHHHHH
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGC--QIIVVPSTWPASE-TLK-------LKPDGVLFSNGPGDPSAV-PYAVAIVKE 257 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~--~v~vvp~~~~~~~-i~~-------~~~DgIiLSgGPGdp~~~-~~~i~~Ir~ 257 (279)
+++|+++|--. ...+.+.|...|+ .+..+.....+-+ +.. ..||.||+--.- |... -..++.+++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~--~~~~g~~~~~~l~~ 79 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL--PKKDGREVLAEIKS 79 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC--SSSCHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC--CcccHHHHHHHHHc
Confidence 35899998643 3456677888888 5555532112222 222 479999884221 2221 234555555
Q ss_pred HH--CCCCEeeec
Q 039151 258 LL--GKVPVFGIC 268 (279)
Q Consensus 258 ~~--~~~PILGIC 268 (279)
.. ...|++-+.
T Consensus 80 ~~~~~~~pii~ls 92 (140)
T 1k68_A 80 DPTLKRIPVVVLS 92 (140)
T ss_dssp STTGGGSCEEEEE
T ss_pred CcccccccEEEEe
Confidence 43 467887764
No 128
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=46.49 E-value=81 Score=29.49 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=23.7
Q ss_pred ccEEEEEEcCch-HHHHHHHHHCCCeEEEEcC
Q 039151 191 TYRVIAYDFGIK-HNILRRLASYGCQIIVVPS 221 (279)
Q Consensus 191 ~~~I~viD~G~k-~~I~r~L~~~G~~v~vvp~ 221 (279)
+.||++|-.|.. .+..+.|.++|++|.+...
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~ 40 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDG 40 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeC
Confidence 358888888753 3568888899999988764
No 129
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=46.19 E-value=75 Score=26.72 Aligned_cols=60 Identities=28% Similarity=0.324 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+ .++..... .++.+. .++|+.-+
T Consensus 21 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~--~~~~~~~~---~~~~~~~~~iPvV~~ 88 (283)
T 2ioy_A 21 NGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINP--VDSDAVVT---AIKEANSKNIPVITI 88 (283)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECC--SSTTTTHH---HHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeC--CchhhhHH---HHHHHHHCCCeEEEe
Confidence 345566778899998876543322 12345899999963 23332222 334443 47787544
No 130
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=45.57 E-value=63 Score=24.25 Aligned_cols=77 Identities=9% Similarity=0.019 Sum_probs=44.9
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCCEe
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVPVF 265 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~PIL 265 (279)
..++|+++|--. ...+.+.|.+.|+.+..+..... .+.+....||.||+--.- |... -..++.+++.....|++
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~~~~~~ii 90 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHL--PQMDGPTLLARIHQQYPSTTRI 90 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCC--CcCcHHHHHHHHHhHCCCCeEE
Confidence 357999998643 34456677778988876543211 122334679999884221 2221 23455566544577887
Q ss_pred eec
Q 039151 266 GIC 268 (279)
Q Consensus 266 GIC 268 (279)
-+.
T Consensus 91 ~~s 93 (153)
T 3hv2_A 91 LLT 93 (153)
T ss_dssp EEC
T ss_pred EEE
Confidence 654
No 131
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=45.28 E-value=81 Score=26.90 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=33.6
Q ss_pred cEEEEEEcCch----------HHHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEEcC
Q 039151 192 YRVIAYDFGIK----------HNILRRLASYGCQIIVVPST-WPASETLKLKPDGVLFSN 240 (279)
Q Consensus 192 ~~I~viD~G~k----------~~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiLSg 240 (279)
++|+++--|.. ..+++.|.++|+++.++..+ .+...+...++|.++..-
T Consensus 3 ~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~ 62 (306)
T 1iow_A 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 (306)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECC
T ss_pred cEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEcC
Confidence 57888876541 45888999999999988654 223334345789887653
No 132
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=44.44 E-value=61 Score=24.52 Aligned_cols=76 Identities=14% Similarity=0.033 Sum_probs=44.3
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHH--CCCCE
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELL--GKVPV 264 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~--~~~PI 264 (279)
+++|+++|--. ...+.+.|.+.|+.+..+.....+ +.+....||.||+--. -|... -..++.+++.- ...|+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVL--MPEMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCCCcCCCCE
Confidence 46899998643 345666778889988766432112 2233457999988422 12222 23445555542 46788
Q ss_pred eeec
Q 039151 265 FGIC 268 (279)
Q Consensus 265 LGIC 268 (279)
+-+.
T Consensus 85 i~~s 88 (154)
T 3gt7_A 85 ILLT 88 (154)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8765
No 133
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=44.43 E-value=54 Score=27.98 Aligned_cols=58 Identities=17% Similarity=0.078 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.++|+.+.++..+.+.+ .+...++||||+.+... . . +.++.+. .++|+.-+
T Consensus 47 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~--~---~~~~~l~~~~iPvV~i 112 (305)
T 3huu_A 47 NGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLK--D--D---PIEHLLNEFKVPYLIV 112 (305)
T ss_dssp HHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBT--T--C---HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcC--C--c---HHHHHHHHcCCCEEEE
Confidence 345567778899998876544322 12346899999975322 1 1 2333333 47787544
No 134
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=44.03 E-value=49 Score=28.29 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+. ++.... +.++++. .++|+.-+
T Consensus 22 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~--~~~~~~---~~~~~~~~~~iPvV~~ 89 (313)
T 3m9w_A 22 DIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY--NGQVLS---NVVKEAKQEGIKVLAY 89 (313)
T ss_dssp HHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECS--STTSCH---HHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC--ChhhhH---HHHHHHHHCCCeEEEE
Confidence 456677888999999887654432 123468999999743 333222 3445555 47787543
No 135
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=43.71 E-value=37 Score=24.91 Aligned_cols=76 Identities=9% Similarity=-0.069 Sum_probs=43.3
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCCEee
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVPVFG 266 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~PILG 266 (279)
.++|+++|--. ...+.+.|.+.|+.+..+.....+ +.+....||.||+--.- |... -..++.+++.....|++-
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~~~~ii~ 84 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRM--PKLGGLEMLDRIKAGGAKPYVIV 84 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSC--SSSCHHHHHHHHHHTTCCCEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCC--CCCCHHHHHHHHHhcCCCCcEEE
Confidence 47899998643 345666777778887766432211 22334579998884321 2221 234444554435677766
Q ss_pred ec
Q 039151 267 IC 268 (279)
Q Consensus 267 IC 268 (279)
+.
T Consensus 85 ~s 86 (137)
T 3hdg_A 85 IS 86 (137)
T ss_dssp CC
T ss_pred Ee
Confidence 54
No 136
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=43.16 E-value=29 Score=32.40 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=45.9
Q ss_pred cEEEEEE----cCc---hHHHHHHHHHCCCeEEEEcCC-----------------------CChhhhhccCCCeEEEcCC
Q 039151 192 YRVIAYD----FGI---KHNILRRLASYGCQIIVVPST-----------------------WPASETLKLKPDGVLFSNG 241 (279)
Q Consensus 192 ~~I~viD----~G~---k~~I~r~L~~~G~~v~vvp~~-----------------------~~~~~i~~~~~DgIiLSgG 241 (279)
.+|++|- -.+ ...+.++|.++|++|.+-+.- .+.+++ ..++|.+|.-||
T Consensus 39 k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlvI~lGG 117 (365)
T 3pfn_A 39 KSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDI-SNQIDFIICLGG 117 (365)
T ss_dssp CEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCC-TTTCSEEEEESS
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhc-ccCCCEEEEEcC
Confidence 4677774 233 356889999999988764310 011111 236888888888
Q ss_pred CCCCCCChHHHHHHHHHH-CCCCEeeecHHH
Q 039151 242 PGDPSAVPYAVAIVKELL-GKVPVFGICMGH 271 (279)
Q Consensus 242 PGdp~~~~~~i~~Ir~~~-~~~PILGICLGh 271 (279)
-| -.+...+.+. ...|++||=+|+
T Consensus 118 DG------T~L~aa~~~~~~~~PvlGiN~G~ 142 (365)
T 3pfn_A 118 DG------TLLYASSLFQGSVPPVMAFHLGS 142 (365)
T ss_dssp TT------HHHHHHHHCSSSCCCEEEEESSS
T ss_pred hH------HHHHHHHHhccCCCCEEEEcCCC
Confidence 66 2344445444 478999998874
No 137
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=43.16 E-value=1.2e+02 Score=24.87 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNG 241 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgG 241 (279)
..+.+.+.+.|+.+.++..+.+.+ .+...++||||+.+.
T Consensus 22 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 67 (272)
T 3o74_A 22 KQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASC 67 (272)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 345567778899999887654432 223458999999743
No 138
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=42.96 E-value=21 Score=27.21 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=23.4
Q ss_pred HHHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEE
Q 039151 204 NILRRLASYGCQIIVVPST-WPASETLKLKPDGVLF 238 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiL 238 (279)
.|.+.|.+.|+++++++.. .+.+++. ++|.|+|
T Consensus 18 ~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~iii 51 (138)
T 5nul_A 18 LIAKGIIESGKDVNTINVSDVNIDELL--NEDILIL 51 (138)
T ss_dssp HHHHHHHHTTCCCEEEEGGGCCHHHHT--TCSEEEE
T ss_pred HHHHHHHHCCCeEEEEEhhhCCHHHHh--hCCEEEE
Confidence 3556677789999888753 4455553 7899988
No 139
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=42.93 E-value=20 Score=31.50 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=34.1
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-C--CCCEeeecHHH
Q 039151 204 NILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-G--KVPVFGICMGH 271 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~--~~PILGICLGh 271 (279)
.+.++|+++|+++. ..++|.||.-||=| -.....+.+. . ++|++||=+|+
T Consensus 19 ~l~~~l~~~g~~v~------------~~~~D~vv~lGGDG------T~l~aa~~~~~~~~~~PilGIn~G~ 71 (272)
T 2i2c_A 19 NMIAGFGEYDMEYD------------DVEPEIVISIGGDG------TFLSAFHQYEERLDEIAFIGIHTGH 71 (272)
T ss_dssp HHHHHHTTSSCEEC------------SSSCSEEEEEESHH------HHHHHHHHTGGGTTTCEEEEEESSS
T ss_pred HHHHHHHHCCCEeC------------CCCCCEEEEEcCcH------HHHHHHHHHhhcCCCCCEEEEeCCC
Confidence 46667888888761 23689999988855 2344455554 2 89999997764
No 140
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=42.90 E-value=1e+02 Score=26.25 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=35.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI 267 (279)
..+.+.+.+.|+.+.++..+.+.+ .+...++||||+.+... .+ ...+ +.+..++|+.-+
T Consensus 35 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~--~~-~~~~---~~l~~~iPvV~i 100 (303)
T 3kke_A 35 SGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRED--FD-DDML---AAVLEGVPAVTI 100 (303)
T ss_dssp HHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTT--CC-HHHH---HHHHTTSCEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCC--Cc-HHHH---HHHhCCCCEEEE
Confidence 446677788999999887654322 12346899999975432 21 1123 333337887654
No 141
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=42.81 E-value=44 Score=24.10 Aligned_cols=76 Identities=14% Similarity=0.016 Sum_probs=43.2
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHH--HCCCCE
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKEL--LGKVPV 264 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~--~~~~PI 264 (279)
.++|+++|--. ...+.+.|.+.|+++..+.....+ +.+....||.||+--.- |... -..++.+++. ....|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNL--PDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBC--SSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHHhhhccCCCCE
Confidence 35899998643 345666788889877766422111 22334679999884221 2222 2345555554 246777
Q ss_pred eeec
Q 039151 265 FGIC 268 (279)
Q Consensus 265 LGIC 268 (279)
+-+.
T Consensus 81 i~~s 84 (127)
T 3i42_A 81 VAVS 84 (127)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
No 142
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=42.56 E-value=74 Score=26.08 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=30.9
Q ss_pred ccEEEEEEcCch-----------HHHHHHHH---HCCCeEE--EEcCCCChhhhh----c--c--CCCeEEEcCCCC
Q 039151 191 TYRVIAYDFGIK-----------HNILRRLA---SYGCQII--VVPSTWPASETL----K--L--KPDGVLFSNGPG 243 (279)
Q Consensus 191 ~~~I~viD~G~k-----------~~I~r~L~---~~G~~v~--vvp~~~~~~~i~----~--~--~~DgIiLSgGPG 243 (279)
.++|.+|-.|-. ..+.+.|+ +.|+++. ++|.+ .++|. + . ++|.||.+||-|
T Consensus 5 ~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v~~~iv~Dd--~~~I~~~l~~~~~~~~~DlVittGG~g 79 (178)
T 2pbq_A 5 KAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDE--RDLIEKTLIELADEKGCSLILTTGGTG 79 (178)
T ss_dssp CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEEEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 467888876531 23556566 7899773 23332 22221 1 1 699999999876
No 143
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=42.18 E-value=1.1e+02 Score=25.76 Aligned_cols=61 Identities=18% Similarity=0.107 Sum_probs=36.8
Q ss_pred HHHHHHHHHCCC-eEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 203 HNILRRLASYGC-QIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 203 ~~I~r~L~~~G~-~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
..+.+.+.++|+ ++.+.....+.+ .+...++||||+.+. ++. ...+.++.+. .++|+.-+.
T Consensus 22 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~--~~~---~~~~~~~~~~~~~iPvV~~~ 91 (309)
T 2fvy_A 22 KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV--DPA---AAGTVIEKARGQNVPVVFFN 91 (309)
T ss_dssp HHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS--SGG---GHHHHHHHHHTTTCCEEEES
T ss_pred HHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC--Ccc---hhHHHHHHHHHCCCcEEEec
Confidence 345567778898 888876544332 223468999999632 222 1223455555 588987653
No 144
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=41.94 E-value=1e+02 Score=25.98 Aligned_cols=59 Identities=8% Similarity=0.025 Sum_probs=33.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh---h-------hhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS---E-------TLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~---~-------i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI 267 (279)
..+.+.+.+.|+.+.+...+.+.+ + +...++||||+.+.. +. ...++.+++ .++|+.-+
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~--~~--~~~~~~l~~--~~iPvV~~ 96 (290)
T 2rgy_A 28 KQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHD--LH--DEDLDELHR--MHPKMVFL 96 (290)
T ss_dssp HHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSS--SC--HHHHHHHHH--HCSSEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCC--CC--HHHHHHHhh--cCCCEEEE
Confidence 345567778899988876543211 1 223589999996432 11 223333322 47787655
No 145
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=41.89 E-value=77 Score=26.86 Aligned_cols=39 Identities=10% Similarity=-0.058 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNG 241 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgG 241 (279)
..+.+.+.++|+.+.+...+.+.+ .+...++||||+.+.
T Consensus 32 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 77 (295)
T 3hcw_A 32 LGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYS 77 (295)
T ss_dssp HHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred HHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCc
Confidence 446667788899998876543322 223468999999753
No 146
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=41.65 E-value=1.1e+02 Score=27.05 Aligned_cols=76 Identities=12% Similarity=-0.083 Sum_probs=48.3
Q ss_pred ccEEEEEEcCc-------hHHHHHHHHHCC-CeEEEEcCC------CCh-hhhhccCCCeEEEcCCCCCCCCChHHHHHH
Q 039151 191 TYRVIAYDFGI-------KHNILRRLASYG-CQIIVVPST------WPA-SETLKLKPDGVLFSNGPGDPSAVPYAVAIV 255 (279)
Q Consensus 191 ~~~I~viD~G~-------k~~I~r~L~~~G-~~v~vvp~~------~~~-~~i~~~~~DgIiLSgGPGdp~~~~~~i~~I 255 (279)
++||++|+=.. ...+.+.|++.| ++|++.... ..+ +.| .++|.||+. -.++.- .+...+.+
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L--~~~D~vV~~-~~~~~l-~~~~~~~l 79 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDF--SPYQLVVLD-YNGDSW-PEETNRRF 79 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCC--TTCSEEEEC-CCSSCC-CHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhh--hcCCEEEEe-CCCCcC-CHHHHHHH
Confidence 57899995211 234566777888 999887431 011 122 379999974 344432 24566777
Q ss_pred HHHH-CCCCEeeecHH
Q 039151 256 KELL-GKVPVFGICMG 270 (279)
Q Consensus 256 r~~~-~~~PILGICLG 270 (279)
++++ .+.+++|+.-+
T Consensus 80 ~~yV~~Ggglv~~H~a 95 (281)
T 4e5v_A 80 LEYVQNGGGVVIYHAA 95 (281)
T ss_dssp HHHHHTTCEEEEEGGG
T ss_pred HHHHHcCCCEEEEecc
Confidence 7777 78999999754
No 147
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=41.63 E-value=59 Score=27.45 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=23.3
Q ss_pred HHHHHHHHCCCeEEEEcCCCChh---h----hhccCCCeEEEcC
Q 039151 204 NILRRLASYGCQIIVVPSTWPAS---E----TLKLKPDGVLFSN 240 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~---~----i~~~~~DgIiLSg 240 (279)
.+.+.+.+.|+.+.++..+.+.+ + +...++||||+.+
T Consensus 31 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 74 (288)
T 3gv0_A 31 GITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISK 74 (288)
T ss_dssp HHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEES
T ss_pred HHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEec
Confidence 35556677899888876543221 1 2235799999974
No 148
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=41.57 E-value=86 Score=26.34 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI 267 (279)
..+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+.. +. ...++.++ .++|+.-+
T Consensus 28 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~--~~--~~~~~~l~---~~iPvV~~ 92 (285)
T 3c3k_A 28 KGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDAL--SE--LPELQNII---GAFPWVQC 92 (285)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCG--GG--HHHHHHHH---TTSSEEEE
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC--CC--hHHHHHHh---cCCCEEEE
Confidence 345566778899998876544322 1234579999996432 11 22333333 57787655
No 149
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=41.55 E-value=65 Score=26.60 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCeEEEEcC--CCChh-------hhhccC-CCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPS--TWPAS-------ETLKLK-PDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~--~~~~~-------~i~~~~-~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+++.++.. +.+.+ .+.+.+ +||||+.+. ++.... +.++.+. .++|+.-+
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~--~~~~~~---~~~~~~~~~~ipvV~~ 90 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN--SAEDLT---PSVAQYRARNIPVLVV 90 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS--STTTTH---HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC--CHHHHH---HHHHHHHHCCCcEEEE
Confidence 4466777888999998863 23322 223357 999999643 222222 3344444 47887655
No 150
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=40.96 E-value=65 Score=30.78 Aligned_cols=87 Identities=25% Similarity=0.241 Sum_probs=50.7
Q ss_pred cEEEEEEc--Cch---HHHHHHHHHC--CCeEEEEcCCCCh---hhhhccCCCeEEEcCCCCCCC-------C---ChHH
Q 039151 192 YRVIAYDF--GIK---HNILRRLASY--GCQIIVVPSTWPA---SETLKLKPDGVLFSNGPGDPS-------A---VPYA 251 (279)
Q Consensus 192 ~~I~viD~--G~k---~~I~r~L~~~--G~~v~vvp~~~~~---~~i~~~~~DgIiLSgGPGdp~-------~---~~~~ 251 (279)
..++.+|. |.. ..+++.+++. +..+.+-.. .+. ..+.+...|+|.++.|||... . ....
T Consensus 268 ~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v-~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~ 346 (514)
T 1jcn_A 268 VDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTA 346 (514)
T ss_dssp CSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHH
T ss_pred CCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc-chHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhH
Confidence 46777754 432 3567777765 665543111 222 333446899999988787421 0 1235
Q ss_pred HHHHHHHHC--CCCEe---eecHHHHHH-HHHcC
Q 039151 252 VAIVKELLG--KVPVF---GICMGHQLL-GQALG 279 (279)
Q Consensus 252 i~~Ir~~~~--~~PIL---GICLGhQLL-a~AlG 279 (279)
+..++++.. ++|++ ||.-+..+. +.++|
T Consensus 347 ~~~~~~~~~~~~ipVia~GGI~~~~di~kala~G 380 (514)
T 1jcn_A 347 VYKVAEYARRFGVPIIADGGIQTVGHVVKALALG 380 (514)
T ss_dssp HHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcC
Confidence 566666663 89999 787665554 44444
No 151
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=40.78 E-value=70 Score=30.75 Aligned_cols=87 Identities=21% Similarity=0.218 Sum_probs=47.7
Q ss_pred cEEEEEEcCc--hH---HHHHHHHHC--CCeEEEEcCCCC---hhhhhccCCCeEEEcCCCCCCCCC--------h--HH
Q 039151 192 YRVIAYDFGI--KH---NILRRLASY--GCQIIVVPSTWP---ASETLKLKPDGVLFSNGPGDPSAV--------P--YA 251 (279)
Q Consensus 192 ~~I~viD~G~--k~---~I~r~L~~~--G~~v~vvp~~~~---~~~i~~~~~DgIiLSgGPGdp~~~--------~--~~ 251 (279)
..++.||... .. .+++.+++. +..+.+ -.-.+ +..+.+...|+|++++|||+.... + ..
T Consensus 244 ~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~ 322 (496)
T 4fxs_A 244 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITA 322 (496)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHH
T ss_pred CceEEeccccccchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHH
Confidence 4677777643 22 355555553 344433 11122 233445689999999999875321 1 22
Q ss_pred HHHHHHHH--CCCCEee---ecHHHHHH-HHHcC
Q 039151 252 VAIVKELL--GKVPVFG---ICMGHQLL-GQALG 279 (279)
Q Consensus 252 i~~Ir~~~--~~~PILG---ICLGhQLL-a~AlG 279 (279)
+..+.++. .++|+++ |..+-++. ++++|
T Consensus 323 i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~G 356 (496)
T 4fxs_A 323 IADAAGVANEYGIPVIADGGIRFSGDISKAIAAG 356 (496)
T ss_dssp HHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcC
Confidence 33334444 2799986 77666665 55554
No 152
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=40.76 E-value=40 Score=23.95 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=42.8
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCC-CCC-hHHHHHHHHH--HCCCCE
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDP-SAV-PYAVAIVKEL--LGKVPV 264 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp-~~~-~~~i~~Ir~~--~~~~PI 264 (279)
++|+++|--. ...+.+.|.+.|+++........+ +.+....||.+|+--.- | ... ...++.+++. ....|+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~--~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDL--SAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBC--GGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCC--CCCCCHHHHHHHHhcCccccCCCE
Confidence 4899998643 345666788889988755321111 22334579999884221 2 211 2345556654 357888
Q ss_pred eee
Q 039151 265 FGI 267 (279)
Q Consensus 265 LGI 267 (279)
+-+
T Consensus 84 i~~ 86 (127)
T 2gkg_A 84 VII 86 (127)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 153
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=40.62 E-value=79 Score=23.29 Aligned_cols=76 Identities=16% Similarity=0.051 Sum_probs=42.8
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCC---hhhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHH--HHCCC
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWP---ASETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKE--LLGKV 262 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~---~~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~--~~~~~ 262 (279)
.++|+++|--. ...+.+.|.+.|+...+...... .+.+....||.||+--. -|... -..++.+++ .....
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~~ 82 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSAVRKPGANQHT 82 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHHHHSSSTTTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcccccCC
Confidence 46899998643 34566778888988444433221 12233457998888321 12221 234455554 22468
Q ss_pred CEeeec
Q 039151 263 PVFGIC 268 (279)
Q Consensus 263 PILGIC 268 (279)
|++-+.
T Consensus 83 pii~~s 88 (144)
T 3kht_A 83 PIVILT 88 (144)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 888765
No 154
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=40.50 E-value=1e+02 Score=25.65 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=33.5
Q ss_pred HHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151 204 NILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI 267 (279)
.+.+.+.++|+++.+...+.+.+ .+...++||||+.+...+ ....+.+++ ..++|+.-+
T Consensus 28 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~----~~~~~~l~~-~~~iPvV~~ 93 (289)
T 1dbq_A 28 AVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP----EPLLAMLEE-YRHIPMVVM 93 (289)
T ss_dssp HHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC----HHHHHHHHH-TTTSCEEEE
T ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC----HHHHHHHHh-ccCCCEEEE
Confidence 35566777899988876544432 223458999999643221 223333332 146777654
No 155
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=40.49 E-value=98 Score=27.01 Aligned_cols=49 Identities=14% Similarity=-0.058 Sum_probs=33.9
Q ss_pred ccEEEEEEcCc----------hHHHHHHHHHCCCeEEEEcCCC-ChhhhhccCCCeEEEc
Q 039151 191 TYRVIAYDFGI----------KHNILRRLASYGCQIIVVPSTW-PASETLKLKPDGVLFS 239 (279)
Q Consensus 191 ~~~I~viD~G~----------k~~I~r~L~~~G~~v~vvp~~~-~~~~i~~~~~DgIiLS 239 (279)
++||+|+-=|. -..+++.|.+.|+++..+.... ....+...++|.+|..
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~ 72 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNA 72 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEEC
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEc
Confidence 45788886543 2468899999999999986432 2334444589988874
No 156
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=40.15 E-value=1e+02 Score=26.77 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=27.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNG 241 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgG 241 (279)
..+.+.+.++|+.+.+...+.+.+ .+...++||||+.+.
T Consensus 82 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 127 (339)
T 3h5o_A 82 TGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGL 127 (339)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCC
Confidence 456677888999999887654432 223468999999753
No 157
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=39.69 E-value=98 Score=27.12 Aligned_cols=58 Identities=16% Similarity=0.345 Sum_probs=36.1
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+... .. +.++.+. .++|+.-|
T Consensus 90 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~----~~---~~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 90 QSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGH----TE---QTIRLLQRASIPIVEI 155 (355)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCC----CH---HHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCC----CH---HHHHHHHhCCCCEEEE
Confidence 446677788999999887654432 12346899999974321 12 2334444 57888755
No 158
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=39.64 E-value=90 Score=25.80 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=33.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI 267 (279)
..+.+.+.+.|+.+.++..+.+.+ .+...++||||+.+.. +. ...++.+++ .++|+.-+
T Consensus 23 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~--~~--~~~~~~l~~--~~iPvV~~ 88 (275)
T 3d8u_A 23 PSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSE--HS--QRTHQLLEA--SNTPVLEI 88 (275)
T ss_dssp HHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSC--CC--HHHHHHHHH--HTCCEEEE
T ss_pred HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCC--CC--HHHHHHHHh--CCCCEEEE
Confidence 345566778899888776543322 2234579999987432 11 222332222 37787654
No 159
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=39.61 E-value=61 Score=27.46 Aligned_cols=58 Identities=10% Similarity=0.179 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCh------hhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPA------SETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~------~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI 267 (279)
..+.+.+.++|+.+.+...+.+. +.+...++||||+.+...+ . +.++.+..++|+.-+
T Consensus 31 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~---~~~~~~~~~iPvV~i 94 (289)
T 3k9c_A 31 EQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFD----T---DELGALADRVPALVV 94 (289)
T ss_dssp HHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCC----H---HHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCC----H---HHHHHHHcCCCEEEE
Confidence 34566778899999888654321 1233468999999754321 1 233333347787644
No 160
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=39.61 E-value=72 Score=26.51 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHH-HHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVK-ELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir-~~~-~~~PILGI 267 (279)
..+.+.+.++|+.+.++..+.+.+ .+...++||||+.+ . ... .++ .+. .++|+.-+
T Consensus 28 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~--~----~~~---~~~~~l~~~~iPvV~~ 92 (277)
T 3e61_A 28 RGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA--F----NEN---IIENTLTDHHIPFVFI 92 (277)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG--G----GHH---HHHHHHHHC-CCEEEG
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec--C----ChH---HHHHHHHcCCCCEEEE
Confidence 445667788999999887655432 12346899999975 1 122 244 444 58888644
No 161
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=39.53 E-value=62 Score=23.75 Aligned_cols=76 Identities=11% Similarity=-0.025 Sum_probs=43.8
Q ss_pred ccEEEEEEcCc--hHHHHHHHHH-CCCeEEEEcCCCCh-hhhhc-cCCCeEEEcCCCCCC-CC-ChHHHHHHHH--HHCC
Q 039151 191 TYRVIAYDFGI--KHNILRRLAS-YGCQIIVVPSTWPA-SETLK-LKPDGVLFSNGPGDP-SA-VPYAVAIVKE--LLGK 261 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~-~G~~v~vvp~~~~~-~~i~~-~~~DgIiLSgGPGdp-~~-~~~~i~~Ir~--~~~~ 261 (279)
.++|+++|--. ...+.+.|.+ .|+++..+.....+ +.+.. ..||.||+--. -| .. .-..++.+++ ....
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~~~~~~~ 81 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIA--FPVEKEGLEVLSAIRNNSRTAN 81 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSC--SSSHHHHHHHHHHHHHSGGGTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCCCCcHHHHHHHHHhCcccCC
Confidence 46899998643 3445566777 89988765432111 22334 57998888311 12 11 1234555666 4467
Q ss_pred CCEeeec
Q 039151 262 VPVFGIC 268 (279)
Q Consensus 262 ~PILGIC 268 (279)
.|++-+.
T Consensus 82 ~~ii~ls 88 (140)
T 3lua_A 82 TPVIIAT 88 (140)
T ss_dssp CCEEEEE
T ss_pred CCEEEEe
Confidence 8888665
No 162
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=39.44 E-value=78 Score=25.63 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=32.4
Q ss_pred ccEEEEEEcCc---------hHHHHHHHHHCCCeEE---EEcCCCChhhh----hc--c--CCCeEEEcCCCC
Q 039151 191 TYRVIAYDFGI---------KHNILRRLASYGCQII---VVPSTWPASET----LK--L--KPDGVLFSNGPG 243 (279)
Q Consensus 191 ~~~I~viD~G~---------k~~I~r~L~~~G~~v~---vvp~~~~~~~i----~~--~--~~DgIiLSgGPG 243 (279)
.++|.+|-.|- ...+.+.|.+.|+++. ++|.+ .++| .+ . ++|.||.|||-|
T Consensus 13 ~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 13 EVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD--KESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp CCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS--HHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred CCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 46777776653 1336677888999875 34433 2222 11 2 799999999865
No 163
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=39.40 E-value=96 Score=26.34 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+.. +...... ++.+. .++|+.-+
T Consensus 22 ~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~~~---~~~~~~~~iPvV~~ 89 (306)
T 2vk2_A 22 NVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVV--ATGWEPV---LKEAKDAEIPVFLL 89 (306)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS--SSSCHHH---HHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC--hhhHHHH---HHHHHHCCCCEEEe
Confidence 335567778899998886544332 1234589999997432 2222223 33333 47887644
No 164
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=39.19 E-value=53 Score=27.68 Aligned_cols=39 Identities=8% Similarity=0.204 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhh-------hhccCCCeEEEcCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASE-------TLKLKPDGVLFSNG 241 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~-------i~~~~~DgIiLSgG 241 (279)
..+.+.+.+.|+.+.++..+.+.+. +...++||||+.+.
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (291)
T 3egc_A 28 SGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPS 73 (291)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3455677788999998876544322 23458999999754
No 165
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=39.15 E-value=58 Score=23.77 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=42.7
Q ss_pred ccEEEEEEcCc--hHHHHHHHHH-CCCe-EEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHH--HHCCC
Q 039151 191 TYRVIAYDFGI--KHNILRRLAS-YGCQ-IIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKE--LLGKV 262 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~-~G~~-v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~--~~~~~ 262 (279)
.++|+++|--. ...+.+.|.+ .|++ +..+.....+ +.+....||.||+--.- |... ...++.+++ .....
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~~~~~~ 85 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VGMDGFSICHRIKSTPATANI 85 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TTSCHHHHHHHHHTSTTTTTS
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEeccc--CCCcHHHHHHHHHhCccccCC
Confidence 57899998643 3445667777 8998 6655432111 22334579999985322 2211 234455554 22467
Q ss_pred CEeeec
Q 039151 263 PVFGIC 268 (279)
Q Consensus 263 PILGIC 268 (279)
|++-+.
T Consensus 86 ~ii~~s 91 (143)
T 3cnb_A 86 IVIAMT 91 (143)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 887664
No 166
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=39.08 E-value=54 Score=26.83 Aligned_cols=31 Identities=3% Similarity=0.011 Sum_probs=21.1
Q ss_pred ccEEEEEEcCc---hH----HHHHHHHHCCCeEEEEcC
Q 039151 191 TYRVIAYDFGI---KH----NILRRLASYGCQIIVVPS 221 (279)
Q Consensus 191 ~~~I~viD~G~---k~----~I~r~L~~~G~~v~vvp~ 221 (279)
.++|++|-+.. .. .+.+.+.+.|++++++..
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l 43 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKV 43 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEec
Confidence 35899998743 22 345556667999988864
No 167
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=38.58 E-value=1.1e+02 Score=25.72 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCCeEEEEcCCCC--hh----hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWP--AS----ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~--~~----~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.++|+.+.++..+.. .. .+...++||||+.+... .+ +.++.+. .++|+.-+
T Consensus 30 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~--~~-----~~~~~l~~~~iPvV~~ 94 (294)
T 3qk7_A 30 SWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQP--ED-----FRLQYLQKQNFPFLAL 94 (294)
T ss_dssp HHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCS--SC-----HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCC--Ch-----HHHHHHHhCCCCEEEE
Confidence 3456677889999988764321 11 12235899999975432 21 2333343 47777544
No 168
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=38.54 E-value=53 Score=24.07 Aligned_cols=76 Identities=16% Similarity=0.035 Sum_probs=43.2
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHH--HHCCCCE
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKE--LLGKVPV 264 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~--~~~~~PI 264 (279)
.++|+++|--. ...+.+.|...|+++..+.....+ +.+....||.||+--.- |... ...++.+++ .....|+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~~~~~~pi 84 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMM--PGMDGWDTIRAILDNSLEQGIAI 84 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCC--SSSCHHHHHHHHHHTTCCTTEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHHhhcccCCCCE
Confidence 57899998643 345667788889987665422111 22334578988884221 2221 234555655 2246777
Q ss_pred eeec
Q 039151 265 FGIC 268 (279)
Q Consensus 265 LGIC 268 (279)
+-+.
T Consensus 85 i~~s 88 (142)
T 3cg4_A 85 VMLT 88 (142)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 169
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=38.53 E-value=57 Score=23.92 Aligned_cols=77 Identities=19% Similarity=0.130 Sum_probs=42.0
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhc-cCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCCE
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLK-LKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVPV 264 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~-~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~PI 264 (279)
.+.+|+++|-.. ...+.+.|...|+.+..+.....+ +.+.. ..||.+|+--.- |... -..++.+++.....|+
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l--~~~~g~~~~~~l~~~~~~~~i 91 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQL--VDLSIFSLLDIVKEQTKQPSV 91 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTC--TTSCHHHHHHHHTTSSSCCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCC--CCCCHHHHHHHHHhhCCCCCE
Confidence 357899999643 344556778889987655422111 22334 579998884221 2211 1233333332246787
Q ss_pred eeec
Q 039151 265 FGIC 268 (279)
Q Consensus 265 LGIC 268 (279)
+-+.
T Consensus 92 i~ls 95 (138)
T 2b4a_A 92 LILT 95 (138)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 170
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=38.21 E-value=87 Score=30.19 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=50.2
Q ss_pred ccEEEEEEcC--ch---HHHHHHHHHC--CCeEEEEcCCC--ChhhhhccCCCeEEEcCCCCCCCC--------Ch--HH
Q 039151 191 TYRVIAYDFG--IK---HNILRRLASY--GCQIIVVPSTW--PASETLKLKPDGVLFSNGPGDPSA--------VP--YA 251 (279)
Q Consensus 191 ~~~I~viD~G--~k---~~I~r~L~~~--G~~v~vvp~~~--~~~~i~~~~~DgIiLSgGPGdp~~--------~~--~~ 251 (279)
+..++++|.. .. ..+++++++. +..+.+-...+ .+..+.+...|+|++..|||+... .+ ..
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~ 347 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTA 347 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHH
Confidence 3567788752 21 2355666554 33333222111 123344568999999888887321 11 22
Q ss_pred HHHHHHHH-C-CCCEe---eecHHHHHH-HHHcC
Q 039151 252 VAIVKELL-G-KVPVF---GICMGHQLL-GQALG 279 (279)
Q Consensus 252 i~~Ir~~~-~-~~PIL---GICLGhQLL-a~AlG 279 (279)
+..+.++. . ++|++ ||..+-++. |+++|
T Consensus 348 l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~G 381 (511)
T 3usb_A 348 VYDCATEARKHGIPVIADGGIKYSGDMVKALAAG 381 (511)
T ss_dssp HHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhC
Confidence 33344444 2 79999 898888877 66665
No 171
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=37.62 E-value=90 Score=29.36 Aligned_cols=87 Identities=24% Similarity=0.352 Sum_probs=44.5
Q ss_pred cEEEEEEc--CchH---HHHHHHHHC-CCeEEEEcCCCChh---hhhccCCCeEEEcCCCCCCCC--------Ch--HHH
Q 039151 192 YRVIAYDF--GIKH---NILRRLASY-GCQIIVVPSTWPAS---ETLKLKPDGVLFSNGPGDPSA--------VP--YAV 252 (279)
Q Consensus 192 ~~I~viD~--G~k~---~I~r~L~~~-G~~v~vvp~~~~~~---~i~~~~~DgIiLSgGPGdp~~--------~~--~~i 252 (279)
..++++|. |... .+++.+++. +..+.+ ..-.+.+ .+.+..+|+|++.+|||+... .+ ..+
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~-g~V~t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al 235 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAI 235 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEE-EEECSHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEE-eecCCHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHH
Confidence 57888875 4433 455666654 655543 1112333 344568999999777875321 11 233
Q ss_pred HHHHHHH--CCCCEee---ecHHHHHH-HHHcC
Q 039151 253 AIVKELL--GKVPVFG---ICMGHQLL-GQALG 279 (279)
Q Consensus 253 ~~Ir~~~--~~~PILG---ICLGhQLL-a~AlG 279 (279)
..+.+.. .++|++. |.-+..+. ++++|
T Consensus 236 ~~v~~~~~~~~IPVIA~GGI~~~~di~kalalG 268 (400)
T 3ffs_A 236 EKCSSVASKFGIPIIADGGIRYSGDIGKALAVG 268 (400)
T ss_dssp HHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcC
Confidence 4444444 3789985 76565554 44444
No 172
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=37.43 E-value=61 Score=27.40 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=35.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.++|+++.++... +.+ .+...++||||+.+. ++. .....++++. .++|+.-+
T Consensus 22 ~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~--~~~---~~~~~~~~~~~~~iPvV~~ 88 (306)
T 8abp_A 22 KFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTP--DPK---LGSAIVAKARGYDMKVIAV 88 (306)
T ss_dssp HHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECS--CGG---GHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCC--Cch---hhHHHHHHHHHCCCcEEEe
Confidence 44667778889999887653 322 223468999999742 222 2233455554 57887543
No 173
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=37.31 E-value=33 Score=26.35 Aligned_cols=63 Identities=19% Similarity=0.082 Sum_probs=33.2
Q ss_pred HHHHHHHCCCeEEEEcCC-CChhhhhccC-CCeEEEcCCC----CC---CCCChHHHHHHHH-HHCCCCEeeecHH
Q 039151 205 ILRRLASYGCQIIVVPST-WPASETLKLK-PDGVLFSNGP----GD---PSAVPYAVAIVKE-LLGKVPVFGICMG 270 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~-~~~~~i~~~~-~DgIiLSgGP----Gd---p~~~~~~i~~Ir~-~~~~~PILGICLG 270 (279)
|.+.|.+.|+++++++.. .+.+++ .+ +|.||+. .| |. |......++.+.. .+.++++.=+|.|
T Consensus 21 i~~~l~~~g~~v~~~~~~~~~~~~l--~~~~d~ii~~-~p~y~~g~~~~p~~~~~fl~~l~~~~l~~k~~~v~~~g 93 (147)
T 1f4p_A 21 IARELADAGYEVDSRDAASVEAGGL--FEGFDLVLLG-CSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCG 93 (147)
T ss_dssp HHHHHHHHTCEEEEEEGGGCCSTTT--TTTCSEEEEE-ECEECSSSCEECTTTHHHHHTGGGSCCTTCEEEEEEEE
T ss_pred HHHHHHhcCCeeEEEehhhCCHHHh--cCcCCEEEEE-eCCCCCCCcCCChhHHHHHHHHHhcccCCCEEEEEeec
Confidence 445566678999888643 333344 36 8998883 33 33 3333333333322 1246666655553
No 174
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=37.14 E-value=32 Score=29.61 Aligned_cols=38 Identities=26% Similarity=0.593 Sum_probs=27.9
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEeeecH
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFGICM 269 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILGICL 269 (279)
+.|+|.++-|||+..-....+...|.+. .++|+.||+.
T Consensus 55 did~Iav~~GPGsftglRig~~~ak~la~~~~~Pl~~V~~ 94 (231)
T 2gel_A 55 EIDALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVST 94 (231)
T ss_dssp GCSEEEEECCSSCHHHHHHHHHHHHHHHHTTTCCEEEECH
T ss_pred HCCEEEEEcCCChhHhHHHHHHHHHHHHHHcCCCEEEecc
Confidence 4699999999998753333345555554 5999999995
No 175
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=36.95 E-value=25 Score=29.40 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=34.8
Q ss_pred cEEEEEEcC-----c-hHHHHHHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEEcCC
Q 039151 192 YRVIAYDFG-----I-KHNILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNG 241 (279)
Q Consensus 192 ~~I~viD~G-----~-k~~I~r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiLSgG 241 (279)
.+|++.-.+ + +.-+...|+..|+++..+-.+.+.+++. +.+||.|.+|.-
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECC
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 467766332 1 2334456788999999887777777654 368999999965
No 176
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=36.94 E-value=96 Score=25.23 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=33.0
Q ss_pred ccEEEEEEcCc---------hHHHHHHHHHCCCeEE---EEcCCCChhhhh-------cc-CCCeEEEcCCCC
Q 039151 191 TYRVIAYDFGI---------KHNILRRLASYGCQII---VVPSTWPASETL-------KL-KPDGVLFSNGPG 243 (279)
Q Consensus 191 ~~~I~viD~G~---------k~~I~r~L~~~G~~v~---vvp~~~~~~~i~-------~~-~~DgIiLSgGPG 243 (279)
.++|.+|-.|- ...+.+.|.+.|+++. ++|.+ .++|. +. ++|.||.|||-|
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN--RYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 46888887653 1336677889999875 44433 22221 12 499999999876
No 177
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=36.31 E-value=86 Score=26.13 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.++|+.+.+...+.+.+ .+...++||||+.+. ++..... .++.+. .++|+.-+
T Consensus 21 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~--~~~~~~~---~~~~~~~~~iPvV~i 88 (271)
T 2dri_A 21 DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT--DSDAVGN---AVKMANQANIPVITL 88 (271)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS--STTTTHH---HHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC--ChHHHHH---HHHHHHHCCCcEEEe
Confidence 445667788899998876543322 223457999999632 2322222 334333 46776544
No 178
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=36.02 E-value=1.7e+02 Score=25.23 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=26.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNG 241 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgG 241 (279)
..+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+.
T Consensus 83 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 83 RGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred HHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 345567778999998886554432 223458999999753
No 179
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=35.31 E-value=1.2e+02 Score=26.70 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=21.9
Q ss_pred ccEEEEEEc-C-chHHHHHHHHHCCCeEEEE
Q 039151 191 TYRVIAYDF-G-IKHNILRRLASYGCQIIVV 219 (279)
Q Consensus 191 ~~~I~viD~-G-~k~~I~r~L~~~G~~v~vv 219 (279)
.+||++|-+ | +-...++.|.+.++++..+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav 33 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVAS 33 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEE
Confidence 478999999 5 4556778888888776644
No 180
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=35.26 E-value=1.6e+02 Score=25.29 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=41.0
Q ss_pred cEEEEEEcC--chHHHHHHHHHCCCeEEEEcCC---CChhhhhc-cCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCE
Q 039151 192 YRVIAYDFG--IKHNILRRLASYGCQIIVVPST---WPASETLK-LKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPV 264 (279)
Q Consensus 192 ~~I~viD~G--~k~~I~r~L~~~G~~v~vvp~~---~~~~~i~~-~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PI 264 (279)
-+|+++..- ....+.+.-.+.|+....-.|- .+-..+.+ ..||.||+. ||... ...|+++. -++|+
T Consensus 69 ~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~----Dp~~e---~~ai~EA~~l~IPv 141 (208)
T 1vi6_A 69 SKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVN----DPAID---KQAVSEATAVGIPV 141 (208)
T ss_dssp GGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEES----CTTTT---HHHHHHHHHTTCCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEE----CCCcc---hhHHHHHHHhCCCE
Confidence 367777642 2334555555667766544442 11111111 369999996 66543 34556666 59999
Q ss_pred eeec
Q 039151 265 FGIC 268 (279)
Q Consensus 265 LGIC 268 (279)
.|+|
T Consensus 142 Ialv 145 (208)
T 1vi6_A 142 VALC 145 (208)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9999
No 181
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=35.05 E-value=77 Score=24.61 Aligned_cols=77 Identities=16% Similarity=0.019 Sum_probs=42.3
Q ss_pred CccEEEEEEcC-ch-HHHHHHHHHCCCeE-EEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCCh-HHHHHHHHHH--CCC
Q 039151 190 KTYRVIAYDFG-IK-HNILRRLASYGCQI-IVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAVP-YAVAIVKELL--GKV 262 (279)
Q Consensus 190 ~~~~I~viD~G-~k-~~I~r~L~~~G~~v-~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~~-~~i~~Ir~~~--~~~ 262 (279)
+.+||+++|=- .. ..+.+.|++.|+.+ ........+ +.+....||.|++== .=|.... ..++.||+.- ..+
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~--~MP~mdG~el~~~ir~~~~~~~i 88 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDW--NMPGMQGIDLLKNIRADEELKHL 88 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEES--CCSSSCHHHHHHHHHHSTTTTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcC--CCCCCCHHHHHHHHHhCCCCCCC
Confidence 35789999843 22 33456678889864 333221111 223345899888710 1144333 3455666533 578
Q ss_pred CEeeec
Q 039151 263 PVFGIC 268 (279)
Q Consensus 263 PILGIC 268 (279)
||+-+-
T Consensus 89 pvI~lT 94 (134)
T 3to5_A 89 PVLMIT 94 (134)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 987653
No 182
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=34.82 E-value=99 Score=26.90 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhh-------hhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASE-------TLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~-------i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.++|+.+.+...+.+.+. +...++||||+.+... .. +.++.+. .++|+.-+
T Consensus 88 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~----~~---~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 88 TGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH----SE---AARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC----CH---HHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC----CH---HHHHHHHhCCCCEEEE
Confidence 3455667778999988766544321 2345899999974321 12 2333343 57887655
No 183
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=34.18 E-value=56 Score=23.97 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=41.9
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCCC--eEEEEcCCCChhh-hhc----------cCCCeEEEcCCCCCCCCC-hHHHH
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYGC--QIIVVPSTWPASE-TLK----------LKPDGVLFSNGPGDPSAV-PYAVA 253 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G~--~v~vvp~~~~~~~-i~~----------~~~DgIiLSgGPGdp~~~-~~~i~ 253 (279)
..++|+++|--. ...+.+.|.+.|+ .+..+.....+-+ +.. ..||.||+--.- |... ...++
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l--~~~~g~~~~~ 82 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL--PGTDGREVLQ 82 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC--SSSCHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC--CCCCHHHHHH
Confidence 356899998643 3456677888888 6665532212222 222 578988884221 2221 12334
Q ss_pred HHHHHH--CCCCEeeec
Q 039151 254 IVKELL--GKVPVFGIC 268 (279)
Q Consensus 254 ~Ir~~~--~~~PILGIC 268 (279)
.+++.. ...|++-+.
T Consensus 83 ~l~~~~~~~~~~ii~~t 99 (149)
T 1k66_A 83 EIKQDEVLKKIPVVIMT 99 (149)
T ss_dssp HHTTSTTGGGSCEEEEE
T ss_pred HHHhCcccCCCeEEEEe
Confidence 444332 357887664
No 184
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=33.97 E-value=46 Score=24.12 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=30.9
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEc
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFS 239 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLS 239 (279)
+++|+++|--. ...+.+.|.+.|+.+..+.....+ +.+....||.||+-
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d 57 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLD 57 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEe
Confidence 46899998643 344566788889988766432111 22334689988884
No 185
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=33.90 E-value=1.4e+02 Score=24.80 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI 267 (279)
..+.+.+.+.|+++.++....+.+ .+...++||||+.+.. +. ...++.+++ ..++|+.-+
T Consensus 41 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~--~~--~~~~~~l~~-~~~iPvV~~ 107 (296)
T 3brq_A 41 FHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF--LS--VDEIDDIID-AHSQPIMVL 107 (296)
T ss_dssp HHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSS--SC--HHHHHHHHH-TCSSCEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCC--CC--hHHHHHHHh-cCCCCEEEE
Confidence 345566777899988876544322 2234579999987432 11 223333322 147787654
No 186
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=33.78 E-value=1.3e+02 Score=27.20 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=38.3
Q ss_pred EEEEEEcCc--hHHHHHHHHHCCCeEEEEcCC----CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEe
Q 039151 193 RVIAYDFGI--KHNILRRLASYGCQIIVVPST----WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVF 265 (279)
Q Consensus 193 ~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~----~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PIL 265 (279)
+|++|..-- ...+.+.-.+.|+....-++- +......-..||.||+. ||... ...|+++. -++|+.
T Consensus 73 ~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~----Dp~~e---~~AI~EA~~lgIPvI 145 (295)
T 2zkq_b 73 DVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVT----DPRAD---HQPLTEASYVNLPTI 145 (295)
T ss_dssp GEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEES----CTTTT---HHHHHHHHHHTCCEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEe----CCCcc---hhHHHHHHHhCCCEE
Confidence 577765421 223444445567755443331 11111111369999996 66543 34556665 499999
Q ss_pred eec
Q 039151 266 GIC 268 (279)
Q Consensus 266 GIC 268 (279)
|||
T Consensus 146 alv 148 (295)
T 2zkq_b 146 ALC 148 (295)
T ss_dssp EEE
T ss_pred EEe
Confidence 998
No 187
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=33.47 E-value=46 Score=24.49 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=42.1
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCC--eEEEEcCCCChhh-hhc------cCCCeEEEcCCCCCCCCC-hHHHHHHHHH
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGC--QIIVVPSTWPASE-TLK------LKPDGVLFSNGPGDPSAV-PYAVAIVKEL 258 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~--~v~vvp~~~~~~~-i~~------~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~ 258 (279)
.++|+++|-.. ...+.+.|.+.|+ .+..+.....+-+ +.. ..||.||+--.- |... ...++.+++.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l--~~~~g~~~~~~l~~~ 84 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINI--PKMNGIEFLKELRDD 84 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTC--TTSCHHHHHHHHTTS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCC--CCCCHHHHHHHHHcC
Confidence 46899998643 3456677888887 6666543222222 222 469999884221 2221 2334444443
Q ss_pred H--CCCCEeeec
Q 039151 259 L--GKVPVFGIC 268 (279)
Q Consensus 259 ~--~~~PILGIC 268 (279)
. ...|++-++
T Consensus 85 ~~~~~~~ii~ls 96 (143)
T 2qvg_A 85 SSFTDIEVFVLT 96 (143)
T ss_dssp GGGTTCEEEEEE
T ss_pred ccccCCcEEEEe
Confidence 3 467877664
No 188
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=33.27 E-value=1.1e+02 Score=27.12 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=39.2
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCC----CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCE
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPST----WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPV 264 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~----~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PI 264 (279)
-+|++|..-- ...+.+.-.+.|+....-.|- +......-..||.||+. ||... ...|+++. -++|+
T Consensus 105 ~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~----Dp~~e---~~AI~EA~~lgIPv 177 (253)
T 3bch_A 105 ADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVT----DPRAD---HQPLTEASYVNLPT 177 (253)
T ss_dssp GGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEES----CTTTT---HHHHHHHHHTTCCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEE----CCCcc---chHHHHHHHhCCCE
Confidence 3576665421 223444445567665443331 11111111369999996 66543 34566666 69999
Q ss_pred eeec
Q 039151 265 FGIC 268 (279)
Q Consensus 265 LGIC 268 (279)
.|||
T Consensus 178 Ialv 181 (253)
T 3bch_A 178 IALC 181 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 189
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=32.94 E-value=90 Score=26.92 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=35.1
Q ss_pred HHHHHHHHHCCCeEEEE-cCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVV-PSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vv-p~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.++++|+++.+. +...+.+ .+...++||||+.+ .++..... .++++. .++|+.-+
T Consensus 23 ~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~--~~~~~~~~---~~~~a~~~gipvV~~ 91 (316)
T 1tjy_A 23 NGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSA--VSPDGLCP---ALKRAMQRGVKILTW 91 (316)
T ss_dssp HHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECC--SSSSTTHH---HHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCHHHHHH---HHHHHHHCcCEEEEe
Confidence 34556677889999876 4443322 23346899999963 33433223 344444 57787654
No 190
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=32.89 E-value=1.3e+02 Score=25.59 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCeEEEEc-CCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVP-STWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp-~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+++.++. .+.+.+ .+...++||||+.+. ++.... +.++.+. .++|+.-+
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~--~~~~~~---~~~~~~~~~~iPvV~~ 88 (313)
T 2h3h_A 20 QGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPS--DPTAVI---PTIKKALEMGIPVVTL 88 (313)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS--STTTTH---HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC--ChHHHH---HHHHHHHHCCCeEEEe
Confidence 345566778899998864 233322 223468999999643 333222 2344443 57888655
No 191
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=32.89 E-value=1.3e+02 Score=25.76 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=33.4
Q ss_pred HHHHHHHC-CCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 205 ILRRLASY-GCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 205 I~r~L~~~-G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
+.+.+.+. |+++.+.....+.+ .+...++||||+.+. ++ ....+.++.+. .++|+.-+
T Consensus 27 i~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~--~~---~~~~~~~~~~~~~~iPvV~~ 93 (325)
T 2x7x_A 27 ILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISAN--EA---APMTPIVEEAYQKGIPVILV 93 (325)
T ss_dssp HHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS--SH---HHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC--CH---HHHHHHHHHHHHCCCeEEEe
Confidence 44556667 99998876544322 223468999999632 11 11223445444 57887654
No 192
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=32.52 E-value=78 Score=28.07 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=21.7
Q ss_pred ccEEEEEEc-C-chHHHHHHHHHCCCeEEEE
Q 039151 191 TYRVIAYDF-G-IKHNILRRLASYGCQIIVV 219 (279)
Q Consensus 191 ~~~I~viD~-G-~k~~I~r~L~~~G~~v~vv 219 (279)
.+||.+|-+ | +-...++.|.+.++++..+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav 33 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSA 33 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEE
Confidence 479999999 5 4566778888878776644
No 193
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=32.13 E-value=12 Score=29.94 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=22.5
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHhh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRLR 126 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR 126 (279)
+.+++++||++-|| +.++|++.+.+.
T Consensus 14 ~sENfdeylkalGv----~~~~Rk~a~~~k 39 (133)
T 4a1y_A 14 SSENFDDYMKALGV----GLATRKLGNLAK 39 (133)
T ss_dssp EEESHHHHHHHHTC----CHHHHHHHHHCC
T ss_pred eccCHHHHHHHcCC----CHHHHHhHhhCC
Confidence 45789999999999 579999998874
No 194
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=32.03 E-value=92 Score=29.87 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=34.1
Q ss_pred ccEEEEEEcCchH--HHHHHHHHCCCeEEEEcCCC-C--hhhhh---------------ccCCCeEEEcCCC
Q 039151 191 TYRVIAYDFGIKH--NILRRLASYGCQIIVVPSTW-P--ASETL---------------KLKPDGVLFSNGP 242 (279)
Q Consensus 191 ~~~I~viD~G~k~--~I~r~L~~~G~~v~vvp~~~-~--~~~i~---------------~~~~DgIiLSgGP 242 (279)
..+|.+|-.|-.. .+.+.|.++|++|.+..... + .+.+. ..++|.||+|+|-
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi 90 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAM 90 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTC
T ss_pred CCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCc
Confidence 3578888876543 47888899999998876432 1 11121 1257999998763
No 195
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=32.00 E-value=66 Score=25.96 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHHHHHHHCCCeEE---EEcCCCC-h-hhhhc--c--CCCeEEEcCCCC-CCCCC
Q 039151 204 NILRRLASYGCQII---VVPSTWP-A-SETLK--L--KPDGVLFSNGPG-DPSAV 248 (279)
Q Consensus 204 ~I~r~L~~~G~~v~---vvp~~~~-~-~~i~~--~--~~DgIiLSgGPG-dp~~~ 248 (279)
.+.+.|++.|+++. ++|.+.. . +.+.+ . ++|.||.|||-| .+.|.
T Consensus 25 ~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~ 79 (164)
T 2is8_A 25 AIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRDR 79 (164)
T ss_dssp HHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCC
T ss_pred HHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCC
Confidence 46677888898765 4443321 1 11211 2 699999999876 24443
No 196
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=31.79 E-value=89 Score=26.97 Aligned_cols=58 Identities=28% Similarity=0.324 Sum_probs=34.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+... . . +.++.+. .++|+.-+
T Consensus 80 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~--~--~---~~~~~l~~~~iPvV~~ 145 (332)
T 2hsg_A 80 RGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNV--T--E---EHVEELKKSPVPVVLA 145 (332)
T ss_dssp HHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSC--C--H---HHHHHHTTSSSCEEEE
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCC--C--H---HHHHHHHhCCCCEEEE
Confidence 445567778899998876543321 12345799999975321 1 1 2344443 47787654
No 197
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=31.50 E-value=1.3e+02 Score=25.16 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=25.1
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNG 241 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgG 241 (279)
..+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+.
T Consensus 40 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 85 (293)
T 2iks_A 40 NYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTS 85 (293)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 345566777899988876543322 123457999999653
No 198
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=31.32 E-value=1.4e+02 Score=24.67 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=33.8
Q ss_pred ccEEEEEEcCch-----------HHHHHHHHH---CCCeEE---EEcCCCChhhh----hc----cCCCeEEEcCCCC-C
Q 039151 191 TYRVIAYDFGIK-----------HNILRRLAS---YGCQII---VVPSTWPASET----LK----LKPDGVLFSNGPG-D 244 (279)
Q Consensus 191 ~~~I~viD~G~k-----------~~I~r~L~~---~G~~v~---vvp~~~~~~~i----~~----~~~DgIiLSgGPG-d 244 (279)
.++|.+|-.|-. ..+.+.|++ .|+++. ++|.+ .++| .+ .++|.||.+||-| +
T Consensus 14 ~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVIttGGtg~g 91 (189)
T 1jlj_A 14 QIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE--IEEIKETLIDWCDEKELNLILTTGGTGFA 91 (189)
T ss_dssp CCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred CCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC--HHHHHHHHHHHhhcCCCCEEEEcCCCCCC
Confidence 467888876531 235566776 798775 34443 2222 11 2699999999876 3
Q ss_pred CCCC
Q 039151 245 PSAV 248 (279)
Q Consensus 245 p~~~ 248 (279)
+.|.
T Consensus 92 ~~D~ 95 (189)
T 1jlj_A 92 PRDV 95 (189)
T ss_dssp TTCC
T ss_pred Cccc
Confidence 4443
No 199
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=31.31 E-value=1e+02 Score=26.83 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=43.4
Q ss_pred cEEEEEEcCch---------HHHHHHHHHCCCeEEEEcCCCChh-------hhhc--cCCCeEEEcCCCCCCCCChHHHH
Q 039151 192 YRVIAYDFGIK---------HNILRRLASYGCQIIVVPSTWPAS-------ETLK--LKPDGVLFSNGPGDPSAVPYAVA 253 (279)
Q Consensus 192 ~~I~viD~G~k---------~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~--~~~DgIiLSgGPGdp~~~~~~i~ 253 (279)
.+|.++-.+.. ..+.+.+.++|+++.++..+.+.+ .+.. .++||||+++ +.. ...+
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~---~~~---~~~~ 77 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN---EQY---VAPQ 77 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC---CSS---HHHH
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC---chh---hHHH
Confidence 46666654332 335566777899999987654432 2223 4899999973 211 2334
Q ss_pred HHHHHH-CCCCEeeec
Q 039151 254 IVKELL-GKVPVFGIC 268 (279)
Q Consensus 254 ~Ir~~~-~~~PILGIC 268 (279)
.++++. .++|++-+.
T Consensus 78 ~~~~~~~~giPvV~~~ 93 (350)
T 3h75_A 78 ILRLSQGSGIKLFIVN 93 (350)
T ss_dssp HHHHHTTSCCEEEEEE
T ss_pred HHHHHHhCCCcEEEEc
Confidence 556665 588887653
No 200
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=31.00 E-value=96 Score=26.04 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=22.9
Q ss_pred HHHHHHHHHCCCeEEEE-cCCCC-------hhhhhccCCCeEEEcCC
Q 039151 203 HNILRRLASYGCQIIVV-PSTWP-------ASETLKLKPDGVLFSNG 241 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vv-p~~~~-------~~~i~~~~~DgIiLSgG 241 (279)
..+.+.+.+.|+++.+. ....+ .+.+...++||||+.+.
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 74 (290)
T 3clk_A 28 DGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSI 74 (290)
T ss_dssp HHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESC
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 34556677789998887 54322 12233468999998643
No 201
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=30.96 E-value=1e+02 Score=27.08 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+.. .. . +.++.+. .++|+.-+
T Consensus 86 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~--~~--~---~~~~~l~~~~iPvV~i 151 (348)
T 3bil_A 86 TEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNE--EC--A---NQLEDLQKQGMPVVLV 151 (348)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCG--GG--H---HHHHHHHHC-CCEEEE
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC--CC--h---HHHHHHHhCCCCEEEE
Confidence 345567778999998886554422 1234589999997432 11 1 2333333 57887654
No 202
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=30.80 E-value=61 Score=26.89 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=22.3
Q ss_pred HHHHHHHHHCCCeEEEEcCCCC-------hhhhhccCCCeEEEcCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWP-------ASETLKLKPDGVLFSNG 241 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~-------~~~i~~~~~DgIiLSgG 241 (279)
..+.+.+.++|+++.+.....+ .+.+...++||||+.+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 64 (276)
T 2h0a_A 19 EGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASY 64 (276)
T ss_dssp HHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESC
T ss_pred HHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecC
Confidence 3455667778998887654322 12233457899998753
No 203
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=30.74 E-value=49 Score=29.99 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=43.6
Q ss_pred hHHHHHHHHHC--CCeEEEEcCCCChh---hhhccCCCeEEEcCCCCCCCCCh-------H--HHHHHHHHH--CCCCEe
Q 039151 202 KHNILRRLASY--GCQIIVVPSTWPAS---ETLKLKPDGVLFSNGPGDPSAVP-------Y--AVAIVKELL--GKVPVF 265 (279)
Q Consensus 202 k~~I~r~L~~~--G~~v~vvp~~~~~~---~i~~~~~DgIiLSgGPGdp~~~~-------~--~i~~Ir~~~--~~~PIL 265 (279)
...+++++++. +..+ +...-.+.+ .+.+...|+|++||++|...+.. . .++.+.++. .++|++
T Consensus 136 ~~~~i~~lr~~~~~~~v-i~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVI 214 (336)
T 1ypf_A 136 VINMIQHIKKHLPESFV-IAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPII 214 (336)
T ss_dssp HHHHHHHHHHHCTTSEE-EEEEECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEE
T ss_pred HHHHHHHHHHhCCCCEE-EECCcCCHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEE
Confidence 34567777765 3333 222112333 33456899999999887532100 0 355555555 289998
Q ss_pred ---eecHHHHHH-HHHcC
Q 039151 266 ---GICMGHQLL-GQALG 279 (279)
Q Consensus 266 ---GICLGhQLL-a~AlG 279 (279)
||.-|-.++ ++++|
T Consensus 215 a~GGI~~g~Dv~kalalG 232 (336)
T 1ypf_A 215 ADGGIRTNGDVAKSIRFG 232 (336)
T ss_dssp EESCCCSTHHHHHHHHTT
T ss_pred EeCCCCCHHHHHHHHHcC
Confidence 577777766 33444
No 204
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=30.72 E-value=1.6e+02 Score=25.37 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=25.7
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChhh-------hhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPASE-------TLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~~-------i~~~~~DgIiLSg 240 (279)
..+.+.+.+.|+.+.+...+.+.+. +...++||||+.+
T Consensus 78 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~ 122 (340)
T 1qpz_A 78 EAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMC 122 (340)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeC
Confidence 4455677788999988765544322 2345899999974
No 205
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=30.72 E-value=1.6e+02 Score=25.35 Aligned_cols=60 Identities=18% Similarity=0.113 Sum_probs=32.6
Q ss_pred HHHHHHHHHCCCeEEEE--cCC--CChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHHCCCCEeee
Q 039151 203 HNILRRLASYGCQIIVV--PST--WPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vv--p~~--~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~~~~PILGI 267 (279)
..+.+.+.+.|+++.++ ..+ .+.+ .+...++||||++ +++......++.+++ .++|+.-+
T Consensus 64 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~---~~~~~~~~~~~~~~~--~~ip~V~~ 134 (342)
T 1jx6_A 64 ASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT---LDTTRHRKFVEHVLD--STNTKLIL 134 (342)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC---CSSSTTHHHHHHHHH--HCSCEEEE
T ss_pred HHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe---CChHhHHHHHHHHHH--cCCCEEEE
Confidence 34556777889988776 333 2322 1234589999993 233322333333322 36776543
No 206
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=30.71 E-value=18 Score=28.88 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=22.0
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHhh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRLR 126 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR 126 (279)
+..++++||++-|| +.++|++.+.++
T Consensus 15 sseNfdeylkalGv----~~~~rk~a~~~k 40 (135)
T 1b56_A 15 DSKGFDEYMKELGV----GIALRKMGAMAK 40 (135)
T ss_dssp ECCSHHHHHHHHTC----CHHHHHHHHHCC
T ss_pred cccCHHHHHHHcCC----CHHHHHHhhcCC
Confidence 56789999999999 478899998763
No 207
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=30.69 E-value=94 Score=23.16 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=42.2
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCC--eEEEEcCCCChhh-hh---------ccCCCeEEEcCCCCCCCCC-hHHHHHH
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGC--QIIVVPSTWPASE-TL---------KLKPDGVLFSNGPGDPSAV-PYAVAIV 255 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~--~v~vvp~~~~~~~-i~---------~~~~DgIiLSgGPGdp~~~-~~~i~~I 255 (279)
+++|+++|--. ...+.+.|.+.|+ .+..+.....+-+ +. ...||.||+--. -|... -..++.+
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~--l~~~~g~~~~~~l 81 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN--LPDMTGIDILKLV 81 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB--CSSSBHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC--CCCCcHHHHHHHH
Confidence 46899998643 3456677888898 5555532212212 21 346898888321 12222 2455566
Q ss_pred HH--HHCCCCEeeec
Q 039151 256 KE--LLGKVPVFGIC 268 (279)
Q Consensus 256 r~--~~~~~PILGIC 268 (279)
|+ .....|++-+.
T Consensus 82 r~~~~~~~~pii~~t 96 (152)
T 3heb_A 82 KENPHTRRSPVVILT 96 (152)
T ss_dssp HHSTTTTTSCEEEEE
T ss_pred HhcccccCCCEEEEe
Confidence 65 33577887654
No 208
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=30.53 E-value=57 Score=25.51 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=35.5
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEEcCCCCCCC-CChHHHHHHHHHH-CCCCE
Q 039151 205 ILRRLASYGCQIIVVPSTWPASETL----KLKPDGVLFSNGPGDPS-AVPYAVAIVKELL-GKVPV 264 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiLSgGPGdp~-~~~~~i~~Ir~~~-~~~PI 264 (279)
+...|+..|+++.-+-.+.+.+++. +.++|.|.+|.--+.-. ..+..++.+++.- .++|+
T Consensus 23 v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v 88 (137)
T 1ccw_A 23 LDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILL 88 (137)
T ss_dssp HHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEE
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEE
Confidence 3456788999998665556666653 36899999985443211 1233455555442 24554
No 209
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=30.50 E-value=1.2e+02 Score=25.43 Aligned_cols=60 Identities=10% Similarity=0.090 Sum_probs=34.7
Q ss_pred HHHHHHHHHCCCeEEEEc--CCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVP--STWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp--~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.++|+.+.+.. .+.+.+ .+...++||||+.+. +...... .++++. .++|+.-+
T Consensus 21 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~--~~~~~~~---~~~~~~~~~iPvV~~ 90 (288)
T 1gud_A 21 KGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL--SSVNLVM---PVARAWKKGIYLVNL 90 (288)
T ss_dssp HHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS--SSSTTHH---HHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC--ChHHHHH---HHHHHHHCCCeEEEE
Confidence 345567788899998875 433322 223457999999742 2322222 334443 57887644
No 210
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=30.39 E-value=73 Score=25.32 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=30.1
Q ss_pred cEEEEEEc---CchHH----HHHHHHHCCCeEEEEcCC-C-Chhhhhc--cCCCeEEE
Q 039151 192 YRVIAYDF---GIKHN----ILRRLASYGCQIIVVPST-W-PASETLK--LKPDGVLF 238 (279)
Q Consensus 192 ~~I~viD~---G~k~~----I~r~L~~~G~~v~vvp~~-~-~~~~i~~--~~~DgIiL 238 (279)
.+|+|+=+ |.+.. |.+.|.+.|+++.+++.. . +.+++.. .++|+|||
T Consensus 5 ~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~ 62 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVI 62 (159)
T ss_dssp CEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEE
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEE
Confidence 36776644 44433 556667789999988764 3 4555432 36899999
No 211
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=29.97 E-value=52 Score=27.74 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=26.7
Q ss_pred HHHHHHHHCCCe--E---EEEcCCCC-h-hhhh---c-cCCCeEEEcCCCC-CCCCC
Q 039151 204 NILRRLASYGCQ--I---IVVPSTWP-A-SETL---K-LKPDGVLFSNGPG-DPSAV 248 (279)
Q Consensus 204 ~I~r~L~~~G~~--v---~vvp~~~~-~-~~i~---~-~~~DgIiLSgGPG-dp~~~ 248 (279)
.+.+.|++.|++ + .++|.+.. . +.+. + .++|.||.+||-| .+.|.
T Consensus 27 ~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~~D~ 83 (195)
T 1di6_A 27 ALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDV 83 (195)
T ss_dssp HHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCC
T ss_pred HHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcc
Confidence 366778888876 2 34554321 1 1121 1 1699999999976 35554
No 212
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=29.90 E-value=2.3e+02 Score=23.56 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=33.3
Q ss_pred cEEEEEEcCc-hHHHHHHHHHCCCeEE-EEcCCC-------ChhhhhccCCCeEEEcCCC
Q 039151 192 YRVIAYDFGI-KHNILRRLASYGCQII-VVPSTW-------PASETLKLKPDGVLFSNGP 242 (279)
Q Consensus 192 ~~I~viD~G~-k~~I~r~L~~~G~~v~-vvp~~~-------~~~~i~~~~~DgIiLSgGP 242 (279)
+||.+|-+|. -..+.+.|.+.|+++. ++..+. +++++.+.++|.|+++-.+
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~~~~~~~~l~~~~~DvVv~~~~~ 60 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAASQ 60 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCTTEESSHHHHTTSCCSEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchhhhcCCHHHHhcCCCCEEEECCCH
Confidence 4788888885 3456777777899874 443221 3555543478999997443
No 213
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=29.88 E-value=1.1e+02 Score=28.15 Aligned_cols=87 Identities=24% Similarity=0.334 Sum_probs=45.8
Q ss_pred cEEEEEEcC--chH---HHHHHHHHC-CCeEEEEcCCCCh---hhhhccCCCeEEEcCCCCCCCC--------Ch--HHH
Q 039151 192 YRVIAYDFG--IKH---NILRRLASY-GCQIIVVPSTWPA---SETLKLKPDGVLFSNGPGDPSA--------VP--YAV 252 (279)
Q Consensus 192 ~~I~viD~G--~k~---~I~r~L~~~-G~~v~vvp~~~~~---~~i~~~~~DgIiLSgGPGdp~~--------~~--~~i 252 (279)
..+++||.. ... ..++.+++. +..+.+-.. .+. ..+.+...|+|.++.|||+... .+ ..+
T Consensus 118 ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v-~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i 196 (361)
T 3khj_A 118 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNV-VTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAI 196 (361)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEE-CSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHH
T ss_pred cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccC-CCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCcHHHH
Confidence 456667653 222 344555553 655543121 233 3344568999999888886321 11 123
Q ss_pred HHHHHHH--CCCCEe---eecHHHHHH-HHHcC
Q 039151 253 AIVKELL--GKVPVF---GICMGHQLL-GQALG 279 (279)
Q Consensus 253 ~~Ir~~~--~~~PIL---GICLGhQLL-a~AlG 279 (279)
..++++. .++|++ ||.-+.++. +.++|
T Consensus 197 ~~v~~~~~~~~iPVIA~GGI~~~~di~kala~G 229 (361)
T 3khj_A 197 EKCSSVASKFGIPIIADGGIRYSGDIGKALAVG 229 (361)
T ss_dssp HHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcC
Confidence 3333333 278998 575555543 44444
No 214
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=29.81 E-value=1e+02 Score=26.94 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=36.6
Q ss_pred HHHHHHHHCCCeEEEEcCCC-------ChhhhhccCCCeEEEcCCCCCC-----------CCChHHHHHHHHHH
Q 039151 204 NILRRLASYGCQIIVVPSTW-------PASETLKLKPDGVLFSNGPGDP-----------SAVPYAVAIVKELL 259 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~-------~~~~i~~~~~DgIiLSgGPGdp-----------~~~~~~i~~Ir~~~ 259 (279)
.++++|+..|++|+.+|.+. +.+++ .++|.||+++=+.+. ...+..++.|++++
T Consensus 37 ~~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L--~~yDvIIl~d~~~~~~l~~~~~~~~~~~~~~~~~~l~~~V 108 (248)
T 3soz_A 37 YLLSCLRQGNIDVDYMPAHIVQTRFPQTAEAL--ACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIADYV 108 (248)
T ss_dssp HHHHHHTTTTCEEEEEETTHHHHSCCCSHHHH--HTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHH
T ss_pred HHHHHHhcCCceeEEeCchhhhhhCCCChHHH--hcCCEEEEcCCCcchhccCccccccccCCHHHHHHHHHHH
Confidence 47889999999999998752 23344 489999998433210 11234578888887
No 215
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=29.22 E-value=1.6e+02 Score=28.20 Aligned_cols=87 Identities=25% Similarity=0.285 Sum_probs=46.9
Q ss_pred cEEEEEEcCc--hH---HHHHHHHHC--CCeEEEEcCCCCh---hhhhccCCCeEEEcCCCCCCCC--------C--hHH
Q 039151 192 YRVIAYDFGI--KH---NILRRLASY--GCQIIVVPSTWPA---SETLKLKPDGVLFSNGPGDPSA--------V--PYA 251 (279)
Q Consensus 192 ~~I~viD~G~--k~---~I~r~L~~~--G~~v~vvp~~~~~---~~i~~~~~DgIiLSgGPGdp~~--------~--~~~ 251 (279)
..+++||... .. .+++.+++. +..+.+ -.-.+. ..+.+...|+|.++.|||+... . -..
T Consensus 242 ~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~ 320 (490)
T 4avf_A 242 VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISA 320 (490)
T ss_dssp CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHH
T ss_pred cceEEecccCCcchhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHH
Confidence 4677777532 22 455666553 333333 211233 3344568999999888886421 1 123
Q ss_pred HHHHHHHH-C-CCCEee---ecHHHHHH-HHHcC
Q 039151 252 VAIVKELL-G-KVPVFG---ICMGHQLL-GQALG 279 (279)
Q Consensus 252 i~~Ir~~~-~-~~PILG---ICLGhQLL-a~AlG 279 (279)
+..+.+++ . ++|+++ |..+.++. ++++|
T Consensus 321 l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~G 354 (490)
T 4avf_A 321 IANVAAALEGTGVPLIADGGIRFSGDLAKAMVAG 354 (490)
T ss_dssp HHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 33444444 2 799985 75555554 55544
No 216
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=29.21 E-value=1.6e+02 Score=21.06 Aligned_cols=76 Identities=13% Similarity=0.052 Sum_probs=40.8
Q ss_pred ccEEEEEEcCc-hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHH--CCCCEe
Q 039151 191 TYRVIAYDFGI-KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELL--GKVPVF 265 (279)
Q Consensus 191 ~~~I~viD~G~-k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~--~~~PIL 265 (279)
.++|+++|--. ....++.+.+.|+++..+..... .+.+....||.||+--.- |... -..++.+++.- ...|++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~~~~~pii 81 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLSGEFDCTTAADGASGLQQALAHPPDVLISDVNM--DGMDGYALCGHFRSEPTLKHIPVI 81 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTTSEEEEESSHHHHHHHHHHSCCSEEEECSSC--SSSCHHHHHHHHHHSTTTTTCCEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHhCCccCCCCEE
Confidence 36899998643 33334444348888876643211 122334679998884221 2222 23455555542 377887
Q ss_pred eec
Q 039151 266 GIC 268 (279)
Q Consensus 266 GIC 268 (279)
-+.
T Consensus 82 ~~s 84 (133)
T 3nhm_A 82 FVS 84 (133)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 217
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=29.20 E-value=16 Score=28.86 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=21.8
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHhh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRLR 126 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR 126 (279)
+..++++||++-||| .++|++.+.++
T Consensus 12 ~seNfdeylkalGv~----~~~rk~a~~~k 37 (131)
T 1fdq_A 12 NSQNFDEYMKALGVG----FATRQVGNVTK 37 (131)
T ss_dssp EEESHHHHHHHTTCC----HHHHHHHHHCC
T ss_pred cCcCHHHHHHHcCCC----HHHHHHHhcCC
Confidence 467899999999995 78899998763
No 218
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=28.65 E-value=68 Score=23.43 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=42.5
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCC-CeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCC-ChHHHHHHHHHHCCCCEe
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYG-CQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSA-VPYAVAIVKELLGKVPVF 265 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G-~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~-~~~~i~~Ir~~~~~~PIL 265 (279)
..+|+++|--. ...+.+.|.+.| +++..+.....+ +.+....||.||+--.- |.. .-..++.+++.....|++
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~~~~~~ii 91 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGG--GDLLGKPGIVEARALWATVPLI 91 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEET--TGGGGSTTHHHHHGGGTTCCEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCC--CCchHHHHHHHHHhhCCCCcEE
Confidence 46899998643 345666788888 888765432221 12334579988883111 111 112344455444577877
Q ss_pred eec
Q 039151 266 GIC 268 (279)
Q Consensus 266 GIC 268 (279)
-+.
T Consensus 92 ~~s 94 (135)
T 3snk_A 92 AVS 94 (135)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 219
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=28.63 E-value=1.7e+02 Score=25.28 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccCCCeEEEcCC
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLKPDGVLFSNG 241 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~~DgIiLSgG 241 (279)
..+.+.+.+.|+.+.+...+.+.+ .+...++||||+.+.
T Consensus 83 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 83 FHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 445677788999999887654432 123458999999753
No 220
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=28.47 E-value=82 Score=26.37 Aligned_cols=60 Identities=20% Similarity=0.332 Sum_probs=33.3
Q ss_pred HHHHHHHHHC-CCeEEEEcC---CCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASY-GCQIIVVPS---TWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~-G~~v~vvp~---~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.++ |+.+.+... ..+.+ .+...++||||+.+. ++.... +.++.+. .++|+.-+
T Consensus 29 ~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~--~~~~~~---~~~~~~~~~~iPvV~~ 100 (304)
T 3gbv_A 29 KGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT--VPQYTK---GFTDALNELGIPYIYI 100 (304)
T ss_dssp HHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS--SGGGTH---HHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC--ChHHHH---HHHHHHHHCCCeEEEE
Confidence 3455667777 888887642 12221 233568999999743 222222 3344444 37787654
No 221
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=28.47 E-value=1.9e+02 Score=25.56 Aligned_cols=79 Identities=18% Similarity=0.290 Sum_probs=47.2
Q ss_pred ccEEEEEEcCc-hHHHHHHHHHC--CCeEEEE------cCC-CChhhh-----------hccCCCeEEEcCCCCCCCCCh
Q 039151 191 TYRVIAYDFGI-KHNILRRLASY--GCQIIVV------PST-WPASET-----------LKLKPDGVLFSNGPGDPSAVP 249 (279)
Q Consensus 191 ~~~I~viD~G~-k~~I~r~L~~~--G~~v~vv------p~~-~~~~~i-----------~~~~~DgIiLSgGPGdp~~~~ 249 (279)
.++|.++|-|+ --++++.+.+. ..++..+ ||. -+.+++ .+..+|.|+|. - +...
T Consensus 24 ~~~IgvfDSGvGGLtv~~~i~~~lP~e~~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIA---C--NTa~ 98 (274)
T 3uhf_A 24 AMKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIA---C--NTAS 98 (274)
T ss_dssp CCEEEEEESSSTTHHHHHHHHHTTCCSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEEC---C--HHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe---C--CChh
Confidence 46899999987 44677777664 4555544 222 244433 23589999994 1 1111
Q ss_pred -HHHHHHHHHHCCCCEeeec-HHHHHHH
Q 039151 250 -YAVAIVKELLGKVPVFGIC-MGHQLLG 275 (279)
Q Consensus 250 -~~i~~Ir~~~~~~PILGIC-LGhQLLa 275 (279)
..++.+|+.. .+|++||- -+.+-..
T Consensus 99 ~~al~~lr~~~-~iPvigiiepa~~~a~ 125 (274)
T 3uhf_A 99 AYALDALRAKA-HFPVYGVIDAGVEATI 125 (274)
T ss_dssp HHSHHHHHHHC-SSCEECSHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCEEcCCHHHHHHHH
Confidence 1256666654 79999987 4544433
No 222
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=28.38 E-value=71 Score=32.32 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=44.3
Q ss_pred cEEEEEEcC---c-------hHHHHHHHHHCCCeEEEEcCCCChhhhh-cc-CCCeEEEcCCCCCCC----CC-hHHHHH
Q 039151 192 YRVIAYDFG---I-------KHNILRRLASYGCQIIVVPSTWPASETL-KL-KPDGVLFSNGPGDPS----AV-PYAVAI 254 (279)
Q Consensus 192 ~~I~viD~G---~-------k~~I~r~L~~~G~~v~vvp~~~~~~~i~-~~-~~DgIiLSgGPGdp~----~~-~~~i~~ 254 (279)
|+|++||=- . ...+...|++.|++|.......++.+.. .. ++|.|||.=. .|. .. ...++.
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~--lp~~~~~~~G~~ll~~ 78 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGK 78 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECC--CCSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCcccccccHHHHHHH
Confidence 478888643 3 3556778999999988765422222222 33 4999999632 343 11 124455
Q ss_pred HHHHHCCCCEeeec
Q 039151 255 VKELLGKVPVFGIC 268 (279)
Q Consensus 255 Ir~~~~~~PILGIC 268 (279)
||+.-.++||+=+.
T Consensus 79 iR~~~~~iPIi~lT 92 (755)
T 2vyc_A 79 LHERQQNVPVFLLG 92 (755)
T ss_dssp HHHHSTTCCEEEEE
T ss_pred HHHhCCCCCEEEEe
Confidence 55543479998654
No 223
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=27.95 E-value=63 Score=23.28 Aligned_cols=75 Identities=11% Similarity=-0.059 Sum_probs=38.6
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCCEeeec
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVPVFGIC 268 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~PILGIC 268 (279)
++|+++|--- ...+.+.|...++.+........+.+.....||.||+--.- |... -..++.+++.....|++-+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~~~~~~ii~~s 81 (135)
T 3eqz_A 4 NRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQDIIILDLMM--PDMDGIEVIRHLAEHKSPASLILIS 81 (135)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCTTEEEEEECCT--TTTHHHHHHHHHHHTTCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccCCCEEEEeCCC--CCCCHHHHHHHHHhCCCCCCEEEEE
Confidence 5899998643 33455566667777766643211222222348988884221 2211 12334444433467776553
No 224
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=27.67 E-value=55 Score=26.46 Aligned_cols=75 Identities=11% Similarity=0.052 Sum_probs=42.0
Q ss_pred cEEEEEEcCc---hH----HHHHHHHH-CCCeEEEEcCC-CChhhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHH---
Q 039151 192 YRVIAYDFGI---KH----NILRRLAS-YGCQIIVVPST-WPASETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKEL--- 258 (279)
Q Consensus 192 ~~I~viD~G~---k~----~I~r~L~~-~G~~v~vvp~~-~~~~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~--- 258 (279)
++|+++-+.. +. .|.+.|.+ .|++++++... .+.+++. ++|+||+ +.|---... .....++.++
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~--~aD~ii~-gsP~y~g~~~~~lk~fld~~~~~ 81 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVL--WADGLAV-GSPTNMGLVSWKMKRFFDDVLGD 81 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHH--HCSEEEE-EEECBTTBCCHHHHHHHHHTGGG
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHH--hCCEEEE-EeCccCCcCCHHHHHHHHHHhhh
Confidence 4788886532 22 24555666 78889888754 3455554 6899999 333211111 2334444443
Q ss_pred ----HCCCCEeeecH
Q 039151 259 ----LGKVPVFGICM 269 (279)
Q Consensus 259 ----~~~~PILGICL 269 (279)
+.++|+.-++.
T Consensus 82 ~~~~l~gk~~~~~~t 96 (188)
T 2ark_A 82 LWGEIDGKIACAFSS 96 (188)
T ss_dssp TTTSCTTCEEEEEEE
T ss_pred hHHHhCCCeEEEEEE
Confidence 24677665544
No 225
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=27.55 E-value=2.2e+02 Score=23.75 Aligned_cols=77 Identities=19% Similarity=0.128 Sum_probs=47.2
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCC-CChHHHHHHHHHHCCCCEe
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPS-AVPYAVAIVKELLGKVPVF 265 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~-~~~~~i~~Ir~~~~~~PIL 265 (279)
.+++|+++|=-. ...+.+.|.+.|+++........+ +.+....||.||+--. -|. +.-..++.||+.....|++
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~--mp~~~G~~l~~~ir~~~~~~piI 205 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVN--MPNMDGYRLTQRIRQLGLTLPVI 205 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEES--SCSSCCHHHHHHHHHHHCCSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHHHHHHHhcCCCCcEE
Confidence 357899998643 334556677889988766432222 2233457998887311 122 2234567777766789998
Q ss_pred eec
Q 039151 266 GIC 268 (279)
Q Consensus 266 GIC 268 (279)
.+.
T Consensus 206 ~lt 208 (254)
T 2ayx_A 206 GVT 208 (254)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 226
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=27.48 E-value=1.2e+02 Score=27.80 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=44.4
Q ss_pred EcCchHHHHHHHHH-CCCeEEEEcCCCChh---hhhccCCCeEEEcCCCCCCCC-C---hHHHHHHHHHH-CCCCEe---
Q 039151 198 DFGIKHNILRRLAS-YGCQIIVVPSTWPAS---ETLKLKPDGVLFSNGPGDPSA-V---PYAVAIVKELL-GKVPVF--- 265 (279)
Q Consensus 198 D~G~k~~I~r~L~~-~G~~v~vvp~~~~~~---~i~~~~~DgIiLSgGPGdp~~-~---~~~i~~Ir~~~-~~~PIL--- 265 (279)
|....+.+++++++ .+..+.+--. .+.+ .+.+...|+|++||..|...+ . -..+..+++.+ .++|++
T Consensus 213 d~~~~~~~i~~lr~~~~~PvivK~v-~~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~G 291 (368)
T 2nli_A 213 KQKISPRDIEEIAGHSGLPVFVKGI-QHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDS 291 (368)
T ss_dssp CSBCCHHHHHHHHHHSSSCEEEEEE-CSHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECS
T ss_pred CchhhHHHHHHHHHHcCCCEEEEcC-CCHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEEC
Confidence 44445677888876 4555543211 2233 334568999999986553221 1 13445556566 479998
Q ss_pred eecHHHHHH
Q 039151 266 GICMGHQLL 274 (279)
Q Consensus 266 GICLGhQLL 274 (279)
||.-|..++
T Consensus 292 GI~~g~D~~ 300 (368)
T 2nli_A 292 GVRRGEHVA 300 (368)
T ss_dssp SCCSHHHHH
T ss_pred CCCCHHHHH
Confidence 566676655
No 227
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=27.09 E-value=14 Score=29.43 Aligned_cols=26 Identities=4% Similarity=0.161 Sum_probs=21.6
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHhh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRLR 126 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR 126 (279)
+..++++||++-||| .++|++.+++.
T Consensus 14 sseNfdeymkalGv~----~~~rk~~~~~k 39 (132)
T 3vg7_A 14 SQENFEAFMKAIGLP----EELIQKGKDIK 39 (132)
T ss_dssp EEESHHHHHHHTTCC----HHHHHHHTTCC
T ss_pred eccCHHHHHHHhCCC----HHHHHHHHhCC
Confidence 568899999999994 78998887653
No 228
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=26.86 E-value=1.7e+02 Score=25.66 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=30.7
Q ss_pred ccEEEEEEcCchH--HHHHHHHHCCCeEEEE-cCC-----------------CChhhhhc-cCCCeEEEc
Q 039151 191 TYRVIAYDFGIKH--NILRRLASYGCQIIVV-PST-----------------WPASETLK-LKPDGVLFS 239 (279)
Q Consensus 191 ~~~I~viD~G~k~--~I~r~L~~~G~~v~vv-p~~-----------------~~~~~i~~-~~~DgIiLS 239 (279)
++||.+|-+|.-+ .+++.|...++++..+ ..+ .+.+++++ .++|.|+|+
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~ 73 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACA 73 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEEC
T ss_pred ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEe
Confidence 4689999887533 4566776678886533 221 13344443 368999996
No 229
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=26.83 E-value=17 Score=29.02 Aligned_cols=26 Identities=12% Similarity=0.278 Sum_probs=22.1
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHhh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRLR 126 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR 126 (279)
+..++++||++-||| .++|++.+++.
T Consensus 12 sseNfdeymkalGv~----~~~rk~~~~~k 37 (133)
T 3ppt_A 12 SSENFDDYMKAVGVG----MVMRKMANAAT 37 (133)
T ss_dssp EEESHHHHHHHHTCC----HHHHHHHHHCC
T ss_pred eccCHHHHHHHhCCC----HHHHhhhhcCC
Confidence 567899999999995 78999988764
No 230
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=26.57 E-value=3.2e+02 Score=23.77 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=36.7
Q ss_pred cEEEEEEcCchHHHHHHHHHCCCeEEEEcCC------CChhhhhccCCCeEEEcCCCCCCC
Q 039151 192 YRVIAYDFGIKHNILRRLASYGCQIIVVPST------WPASETLKLKPDGVLFSNGPGDPS 246 (279)
Q Consensus 192 ~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~------~~~~~i~~~~~DgIiLSgGPGdp~ 246 (279)
-+|++.+.+. .++.+.+...|+++..+|.+ .+.+++.+.++..|+++ -|.+|.
T Consensus 116 d~vl~~~p~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~v~i~-~p~npt 174 (391)
T 3h14_A 116 DRVGIGAPGY-PSYRQILRALGLVPVDLPTAPENRLQPVPADFAGLDLAGLMVA-SPANPT 174 (391)
T ss_dssp CEEEEEESCC-HHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTSCCSEEEEE-SSCTTT
T ss_pred CEEEEcCCCC-ccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhcCCeEEEEC-CCCCCC
Confidence 3677777654 34567778899999998864 25566654467888886 566765
No 231
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=26.38 E-value=15 Score=29.32 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.2
Q ss_pred eEEecCchHHHHHHhhhcCcee
Q 039151 111 MGIYDVDTRAITRRLRQDGSLI 132 (279)
Q Consensus 111 pgi~gvDTRaLt~~iR~~G~m~ 132 (279)
-||.|+|.+++|-+|.++|-+-
T Consensus 57 mGidgvda~~iVd~~~e~gLLg 78 (121)
T 3kp1_E 57 MGFSSLEAKAIVDKTMDRGLMG 78 (121)
T ss_dssp TTCCHHHHHHHHHHHHHTTCGG
T ss_pred hCCCccchHHHHHHHHHccccc
Confidence 3789999999999999998763
No 232
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=26.38 E-value=24 Score=33.56 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=35.1
Q ss_pred ccEEEEEEcCc-hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCC
Q 039151 191 TYRVIAYDFGI-KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGP 242 (279)
Q Consensus 191 ~~~I~viD~G~-k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGP 242 (279)
.|||+++-+|- -..+.+.|.+.|++++++..+.. .+.+ ..++|..++.|-+
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~-~~~~~~~~i~Gd~ 55 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLREL-QDKYDLRVVNGHA 55 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHH-HHHSSCEEEESCT
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHhcCcEEEEEcC
Confidence 58999999985 45678889888999999976532 2222 2356777775433
No 233
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=26.28 E-value=18 Score=28.74 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=21.8
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHhh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRLR 126 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR 126 (279)
+..++++||++-||| .++|++.+.+.
T Consensus 12 sseNfdeylkalGv~----~~~rk~a~~~k 37 (134)
T 1crb_A 12 SNENFEEYLRALDVN----VALRKIANLLK 37 (134)
T ss_dssp EEESHHHHHHTTTCC----HHHHHHHHHCC
T ss_pred cCcCHHHHHHHcCCC----HHHHHHhhcCC
Confidence 467899999999995 78899998763
No 234
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=26.00 E-value=18 Score=28.85 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=21.9
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHhh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRLR 126 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR 126 (279)
+..++++||++-||| .++|++.+.++
T Consensus 13 sseNfdeylkalGv~----~~~rk~a~~~k 38 (134)
T 1o8v_A 13 KSEGFDKIMERLGVD----FVTRKMGNLVK 38 (134)
T ss_dssp EEESHHHHHHHHTCC----HHHHHHHHHCC
T ss_pred cCcCHHHHHHHcCCC----HHHHHHhhcCC
Confidence 467899999999994 78899998763
No 235
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=25.94 E-value=1e+02 Score=25.74 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=4.9
Q ss_pred HHHHHHCCCeEE
Q 039151 206 LRRLASYGCQII 217 (279)
Q Consensus 206 ~r~L~~~G~~v~ 217 (279)
++.|...+++-.
T Consensus 56 ~~~l~~~~vdgi 67 (288)
T 2qu7_A 56 IETFVSQNVSAI 67 (288)
T ss_dssp HHHHHHTTEEEE
T ss_pred HHHHHHcCccEE
Confidence 344444444433
No 236
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=25.91 E-value=44 Score=27.15 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=24.1
Q ss_pred HHHHH----HHHCCCeEE---EEcCCCChhhh----h---ccCCCeEEEcCCCC-CCCCC
Q 039151 204 NILRR----LASYGCQII---VVPSTWPASET----L---KLKPDGVLFSNGPG-DPSAV 248 (279)
Q Consensus 204 ~I~r~----L~~~G~~v~---vvp~~~~~~~i----~---~~~~DgIiLSgGPG-dp~~~ 248 (279)
.+.+. |++.|+++. ++|-+ .++| . +.++|.||.+||-| .+.|.
T Consensus 29 ~l~~~~~~~l~~~G~~v~~~~iv~Dd--~~~I~~~l~~a~~~~~DlVittGG~g~~~~D~ 86 (167)
T 2g2c_A 29 LLQRLMSDELQDYSYELISEVVVPEG--YDTVVEAIATALKQGARFIITAGGTGIRAKNQ 86 (167)
T ss_dssp HHHHHHCC----CEEEEEEEEEECSS--HHHHHHHHHHHHHTTCSEEEEESCCSSSTTCC
T ss_pred HHHHhHHhHHHHCCCEEeEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcC
Confidence 46677 888898764 44433 2222 1 12599999999876 34443
No 237
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=25.64 E-value=18 Score=28.64 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=20.9
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRL 125 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 125 (279)
+..++++||++-||| .++|++.+.+
T Consensus 12 sseNfdeylkalGv~----~~~rk~a~~~ 36 (131)
T 2a0a_A 12 KSEKFDEFLDKLGVG----FMVKTAAKTL 36 (131)
T ss_dssp CCCSHHHHHHHHTCC----HHHHTGGGTT
T ss_pred cCcCHHHHHHHcCCC----HHHHHHhhcC
Confidence 567899999999995 6888888765
No 238
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=25.46 E-value=2e+02 Score=25.17 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=43.5
Q ss_pred cEEEEEEcCc-hHHHHHHHHHC--CCeEEEEcCC-------CChhhh-----------hccCCCeEEEcCCCCCCCCCh-
Q 039151 192 YRVIAYDFGI-KHNILRRLASY--GCQIIVVPST-------WPASET-----------LKLKPDGVLFSNGPGDPSAVP- 249 (279)
Q Consensus 192 ~~I~viD~G~-k~~I~r~L~~~--G~~v~vvp~~-------~~~~~i-----------~~~~~DgIiLSgGPGdp~~~~- 249 (279)
..|.++|-|+ --++++.+.+. +.++..+-.+ -+.+++ .+..+|.|+|+ - +...
T Consensus 8 ~pIgvfDSGvGGLtv~~~i~~~lp~~~~iy~~D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~~~iVIA---C--NTa~~ 82 (268)
T 3out_A 8 RPIGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIA---C--NTISA 82 (268)
T ss_dssp SCEEEEESSSTTHHHHHHHHHHCTTCCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEEC---C--HHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHCCCCcEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe---C--CChHH
Confidence 3699999987 34566666542 4555544221 233333 23589999994 1 1111
Q ss_pred HHHHHHHHHHCCCCEeeec
Q 039151 250 YAVAIVKELLGKVPVFGIC 268 (279)
Q Consensus 250 ~~i~~Ir~~~~~~PILGIC 268 (279)
..++.+|+.+..+|++||.
T Consensus 83 ~al~~lr~~~~~iPvigii 101 (268)
T 3out_A 83 IAKDIVQEIAKAIPVIDVI 101 (268)
T ss_dssp HHHHHHHHHHTTSCEEEHH
T ss_pred HHHHHHHHhcCCCCEEecc
Confidence 2557788777579999974
No 239
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=25.26 E-value=87 Score=26.14 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHHHHHHCCCeEEEEcC--CCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 204 NILRRLASYGCQIIVVPS--TWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~--~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
.+.+.+.++|+++.++.. +.+.+ .+...++||||+.+.. +... .+.++.+. .++|+.-+
T Consensus 28 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~--~~~~---~~~~~~~~~~~iPvV~~ 96 (289)
T 3brs_A 28 GAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD--YEKT---YDAAKEIKDAGIKLIVI 96 (289)
T ss_dssp HHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC--TTTT---HHHHTTTGGGTCEEEEE
T ss_pred HHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC--hHHh---HHHHHHHHHCCCcEEEE
Confidence 455667778999888754 23322 2234589999996432 2221 12333333 46776544
No 240
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=25.14 E-value=1.2e+02 Score=26.22 Aligned_cols=60 Identities=15% Similarity=0.017 Sum_probs=35.4
Q ss_pred HHHHHHHHHCCCeEEEEcCCCChh-------hhhccC--CCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeee
Q 039151 203 HNILRRLASYGCQIIVVPSTWPAS-------ETLKLK--PDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGI 267 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp~~~~~~-------~i~~~~--~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGI 267 (279)
..+.+.+.+.|+++.+.....+.+ .+...+ +||||+.+. ++ ....+.++.+. .++|+.-+
T Consensus 25 ~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~--~~---~~~~~~~~~~~~~~iPvV~~ 94 (332)
T 2rjo_A 25 KGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPN--DS---ADARVIVEACSKAGAYVTTI 94 (332)
T ss_dssp HHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCS--SH---HHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCC--CH---HHHHHHHHHHHHCCCeEEEE
Confidence 345567778899998886554432 123357 999999632 22 12223444444 47887654
No 241
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=25.13 E-value=18 Score=28.50 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRL 125 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 125 (279)
+..++++||++-||| .++|++.+.+
T Consensus 10 ~seNfdeylkalGv~----~~~rk~a~~~ 34 (125)
T 1mvg_A 10 AQENYEEFLKALALP----EDLIKMARDI 34 (125)
T ss_dssp EEESHHHHHHHSSSC----HHHHHHHHTC
T ss_pred cccCHHHHHHHcCCC----HHHHHhhccC
Confidence 467899999999995 6889888765
No 242
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=25.02 E-value=88 Score=22.73 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=27.6
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCChhhhhccCCCeEEE
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPASETLKLKPDGVLF 238 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~~~i~~~~~DgIiL 238 (279)
+.+|+++|-.. ...+.+.|...|+.+........+-+.....+|.+++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlvll 56 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFM 56 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTTCSEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhccCCEEEE
Confidence 47899998653 3345566777899876553211122222234577776
No 243
>2c52_B Nuclear receptor coactivator 1; transferase, bromodomain, metal-binding, methylation, nuclear protein, transcription, transcription regulation; NMR {Homo sapiens} SCOP: a.153.1.1
Probab=24.90 E-value=18 Score=25.07 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=15.9
Q ss_pred HHHHHHHcCceEEecCchHHHH
Q 039151 101 LGNYLAERNIMGIYDVDTRAIT 122 (279)
Q Consensus 101 l~~~L~~~~ipgi~gvDTRaLt 122 (279)
|..||+.....|+..|| |||-
T Consensus 17 L~s~L~~~d~~~LeEiD-rALG 37 (59)
T 2c52_B 17 LVSFLSGKDETELAELD-RALG 37 (59)
T ss_dssp HHHHHHTCSGGGTCTTG-GGTS
T ss_pred HHHHHhccchhhHHHHH-HHhh
Confidence 55688888888888887 6664
No 244
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=24.81 E-value=92 Score=22.40 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=40.6
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCCh-HHHHHHHHHH--CCCCEe
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAVP-YAVAIVKELL--GKVPVF 265 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~~-~~i~~Ir~~~--~~~PIL 265 (279)
.+|+++|=-. ...+.+.|.+.|+++........ .+.+....||.||+--. -|.... ..++.+++.- ...|++
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~--~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--MPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--CSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecc--CCCCcHHHHHHHHHhcccccCCCEE
Confidence 4799998642 33455667888998876542111 12233457998888321 133221 2333333321 367887
Q ss_pred eec
Q 039151 266 GIC 268 (279)
Q Consensus 266 GIC 268 (279)
-+.
T Consensus 81 ~~s 83 (122)
T 3gl9_A 81 VLT 83 (122)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
No 245
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=24.76 E-value=19 Score=28.95 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=21.8
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRL 125 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 125 (279)
+..++++||++-||| .++|++.+++
T Consensus 20 ssENfdeymkalGv~----~~~rk~a~~~ 44 (139)
T 3p6d_A 20 SSENFDDYMKEVGVG----FATRKVAGMA 44 (139)
T ss_dssp EEESHHHHHHHHTCC----HHHHHHHHHC
T ss_pred eccCHHHHHHHhCCc----HHHHHHHHhC
Confidence 568899999999995 6899999876
No 246
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular chaperone, heart fatty acid binding type 2 diabetes, atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Probab=24.66 E-value=22 Score=29.37 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=21.8
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRL 125 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 125 (279)
+.+++++||++-||| .++|++.+.+
T Consensus 38 ssENfdeymkalGV~----~~~Rk~a~~~ 62 (158)
T 3rsw_A 38 DSKNFDDYMKSLGVG----FATRQVASMT 62 (158)
T ss_dssp EEESHHHHHHHTTCC----HHHHHHHHHC
T ss_pred eccCHHHHHHHhCCC----HHHHHHHHhC
Confidence 678999999999995 6899999875
No 247
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=24.65 E-value=92 Score=22.25 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=40.7
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH--CCCCEee
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL--GKVPVFG 266 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~--~~~PILG 266 (279)
.+|+++|--. ...+.+.|.+.|+++........+ +.+....||.||+--. -|.. ..++.++++- ...|++-
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~--~g~~~~~~lr~~~~~~ii~ 78 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNK--DGVEVCREVRKKYDMPIIM 78 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTT--HHHHHHHHHHTTCCSCEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCC--CHHHHHHHHHhcCCCCEEE
Confidence 4799998632 344556678889988765421111 2233457998888321 1222 2344444443 3678776
Q ss_pred ec
Q 039151 267 IC 268 (279)
Q Consensus 267 IC 268 (279)
+.
T Consensus 79 ~t 80 (120)
T 3f6p_A 79 LT 80 (120)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 248
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=24.62 E-value=2.2e+02 Score=23.77 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=34.7
Q ss_pred HHHHHHHHHCCCeEEEEc-CCCChh-------hhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 203 HNILRRLASYGCQIIVVP-STWPAS-------ETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 203 ~~I~r~L~~~G~~v~vvp-~~~~~~-------~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
..+.+.+.++|+++.++. ...+.+ .+...++||||+.+. ++ ......++.+. .++|+.-+.
T Consensus 24 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~--~~---~~~~~~~~~~~~~~ipvV~~~ 93 (303)
T 3d02_A 24 EGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN--DA---NVLEPVFKKARDAGIVVLTNE 93 (303)
T ss_dssp HHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS--CH---HHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC--Ch---HHHHHHHHHHHHCCCeEEEEe
Confidence 345567778899887653 333322 223468999999632 21 22234455554 578876553
No 249
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=24.53 E-value=3.5e+02 Score=23.58 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=34.8
Q ss_pred EEEEEEcCchHHHHHHHHHCCCeEEEEcCC------CChhhhhc---cCCCeEEEcCCCCCCCC
Q 039151 193 RVIAYDFGIKHNILRRLASYGCQIIVVPST------WPASETLK---LKPDGVLFSNGPGDPSA 247 (279)
Q Consensus 193 ~I~viD~G~k~~I~r~L~~~G~~v~vvp~~------~~~~~i~~---~~~DgIiLSgGPGdp~~ 247 (279)
+|++.+.+. ..+.+.++..|+++..+|.+ .+.+++.+ .+++.|+++ -|.+|.-
T Consensus 117 ~Vlv~~p~y-~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-~p~NPtG 178 (385)
T 1b5p_A 117 EVIVLSPYW-VSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVN-SPNNPTG 178 (385)
T ss_dssp EEEEEESCC-THHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEE-SSCTTTC
T ss_pred EEEEcCCCc-hhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEe-CCCCCCC
Confidence 688888765 34556677789999888864 34555542 245577775 4777753
No 250
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=24.47 E-value=87 Score=27.99 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=38.4
Q ss_pred HHHHHHHHCCCeEEEEcCCCC--hhh----hhccCCCeEEEcCCCCCCCCChHHHHHHHHHH---CCCCEeeecHH
Q 039151 204 NILRRLASYGCQIIVVPSTWP--ASE----TLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL---GKVPVFGICMG 270 (279)
Q Consensus 204 ~I~r~L~~~G~~v~vvp~~~~--~~~----i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~---~~~PILGICLG 270 (279)
.+.+.|.+.|+++.+...... +.+ .....+|.||+.||=|. ..+.++.++ .+.|+.+|=+|
T Consensus 46 ~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGT------v~~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 46 DALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGT------LNEVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHH------HHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchH------HHHHHHHHHhCCCCCcEEEecCC
Confidence 467788889999988764432 222 22346899999988653 234444442 36777777554
No 251
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=24.44 E-value=19 Score=29.45 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=22.8
Q ss_pred ccCCCHHHHHHHcCceEEecCchHHHHHHhh
Q 039151 96 RCAETLGNYLAERNIMGIYDVDTRAITRRLR 126 (279)
Q Consensus 96 ~~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR 126 (279)
.+.+++++||++-||| .++|++.+.+.
T Consensus 32 ~ssENfdeymkalGv~----~~~Rk~a~~~k 58 (152)
T 3q6l_A 32 VSSENFDDYMKEVGVG----FATRKVAGMAK 58 (152)
T ss_dssp EEEESHHHHHHHHTCC----HHHHHHHHHCC
T ss_pred EeccCHHHHHHHhCCC----HHHHHHHHhCC
Confidence 3678999999999995 78999998763
No 252
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.39 E-value=95 Score=26.55 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=21.9
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
.||.+|+. ||.... ..++++. -++|+.|+|
T Consensus 111 ~Pdllvv~----Dp~~d~---~ai~EA~~l~IP~Ial~ 141 (202)
T 3j20_B 111 EPDVLIVT----DPRADH---QAMREAVEIGIPIVALV 141 (202)
T ss_dssp CCSEEEES----CTTTSH---HHHHHHHHHTCCEEEEE
T ss_pred CCCeEEEe----CCccch---HHHHHHHHcCCCEEEEE
Confidence 69999996 666543 4455555 499999999
No 253
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=24.31 E-value=2e+02 Score=21.18 Aligned_cols=77 Identities=19% Similarity=0.115 Sum_probs=41.4
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCC--C-hhhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCC
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTW--P-ASETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVP 263 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~--~-~~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~P 263 (279)
.+.+|+++|--. ...+.+.|.+.|....+..... . .+.+....||.||+--.- |... ...++.+++.....|
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~~~~~ 91 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM--PGMDGAQVAAAVRSYELPTR 91 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHHTTCSCE
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHHhcCCCCe
Confidence 457999998643 3456667777785533322221 1 122334579999984221 2221 234444554434677
Q ss_pred Eeeec
Q 039151 264 VFGIC 268 (279)
Q Consensus 264 ILGIC 268 (279)
++-+.
T Consensus 92 ii~~s 96 (152)
T 3eul_A 92 VLLIS 96 (152)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76554
No 254
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.25 E-value=2.5e+02 Score=25.62 Aligned_cols=31 Identities=26% Similarity=0.589 Sum_probs=22.3
Q ss_pred cCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 231 LKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
..||.||+. ||.... ..|+++. -++|+.+||
T Consensus 121 ~ePdllvV~----Dp~~d~---qAI~EA~~lnIPtIALv 152 (305)
T 3iz6_A 121 SEPRLLILT----DPRTDH---QPIKESALGNIPTIAFC 152 (305)
T ss_dssp SCCSEEEES----CTTTTH---HHHHHHHHHTCCEEEEE
T ss_pred cCCceeEEe----Ccccch---HHHHHHHHcCCCEEEEE
Confidence 469999996 666443 4445555 499999999
No 255
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=24.17 E-value=21 Score=28.31 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=21.9
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHhh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRLR 126 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR 126 (279)
+..++++||++-||| .++|++.+.+.
T Consensus 12 sseNfdeylkalGv~----~~~rk~a~~~k 37 (132)
T 1mdc_A 12 KQENFDGFLKSAGLS----DDKIQALVSDK 37 (132)
T ss_dssp EEESHHHHHHTTTCC----HHHHHHHHHCC
T ss_pred cccCHHHHHHHhCCC----HHHHhhhccCC
Confidence 467899999999995 78899998764
No 256
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=23.97 E-value=18 Score=28.82 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=21.7
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHhh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRLR 126 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR 126 (279)
+..++++||++-||| .++|++.+.++
T Consensus 12 sseNfdeylkalGv~----~~~rk~a~~~k 37 (134)
T 1ggl_A 12 SQKNMEDYLQALNIS----LAVRKIALLLK 37 (134)
T ss_dssp EEECHHHHHHHTTCC----TTTTTTGGGCC
T ss_pred cCcCHHHHHHHhCCC----HHHHhhhhcCC
Confidence 467899999999995 78899888753
No 257
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein, zebrafish, cholic acid, LIP binding, transport, lipid binding protein; 1.60A {Danio rerio} SCOP: b.60.1.0 PDB: 3elz_A* 3em0_A*
Probab=23.96 E-value=16 Score=29.48 Aligned_cols=26 Identities=19% Similarity=0.080 Sum_probs=21.4
Q ss_pred ccCCCHHHHHHHcCceEEecCchHHHHHHh
Q 039151 96 RCAETLGNYLAERNIMGIYDVDTRAITRRL 125 (279)
Q Consensus 96 ~~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 125 (279)
.+.+++++||++-||| .++|++.+++
T Consensus 13 ~ssENfdeymkalGv~----~~~Rk~~~~~ 38 (138)
T 3elx_A 13 ESQEGYEPFCKLIGIP----DDVIAKGRDF 38 (138)
T ss_dssp EEEESHHHHHHHTTCC----HHHHHHTTTC
T ss_pred EeccCHHHHHHHhCCC----HHHHhHHhcC
Confidence 3568899999999994 7889888765
No 258
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=23.85 E-value=57 Score=28.17 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=32.5
Q ss_pred ccEEEEEEcCc----------hHHHHHHHHHCCCeEEEEcCCCChhhhhc-cCCCeEEEc
Q 039151 191 TYRVIAYDFGI----------KHNILRRLASYGCQIIVVPSTWPASETLK-LKPDGVLFS 239 (279)
Q Consensus 191 ~~~I~viD~G~----------k~~I~r~L~~~G~~v~vvp~~~~~~~i~~-~~~DgIiLS 239 (279)
.+||+|+-=|. -..+++.|.++|+++..+..+.....+.. .++|.+|..
T Consensus 3 ~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 62 (307)
T 3r5x_A 3 AMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLA 62 (307)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEEC
T ss_pred CcEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEe
Confidence 47888887552 24577888889999988865422122222 379988874
No 259
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=23.70 E-value=1.8e+02 Score=23.35 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=31.2
Q ss_pred ccEEEEEEcCc------h-----HHHHHHHHHC-----CCeEE---EEcCCCC-h-hhhhc----cCCCeEEEcCCCC
Q 039151 191 TYRVIAYDFGI------K-----HNILRRLASY-----GCQII---VVPSTWP-A-SETLK----LKPDGVLFSNGPG 243 (279)
Q Consensus 191 ~~~I~viD~G~------k-----~~I~r~L~~~-----G~~v~---vvp~~~~-~-~~i~~----~~~DgIiLSgGPG 243 (279)
.+||.+|--|- . ..+.+.|.+. |+++. ++|.+.. . +.+.+ .++|.||.|||-|
T Consensus 5 ~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 82 (167)
T 1uuy_A 5 EYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTG 82 (167)
T ss_dssp SEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 46788776552 1 2345677777 88765 3443311 1 11221 2699999999875
No 260
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=23.56 E-value=1.6e+02 Score=26.15 Aligned_cols=52 Identities=21% Similarity=0.090 Sum_probs=31.6
Q ss_pred CCccEEEEEEcC-c-hHHHHHHHHHC--CCeEEEE-cCC-----------------CChhhhhc-cCCCeEEEcC
Q 039151 189 SKTYRVIAYDFG-I-KHNILRRLASY--GCQIIVV-PST-----------------WPASETLK-LKPDGVLFSN 240 (279)
Q Consensus 189 ~~~~~I~viD~G-~-k~~I~r~L~~~--G~~v~vv-p~~-----------------~~~~~i~~-~~~DgIiLSg 240 (279)
...+||++|-+| . ....++.|.+. ++++..+ ..+ .+.+++++ .++|.|+|+-
T Consensus 16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~t 90 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTL 90 (340)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECC
T ss_pred CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeC
Confidence 346799999998 4 34467777765 4555433 111 23444443 3699999963
No 261
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=23.54 E-value=1.8e+02 Score=23.08 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=19.6
Q ss_pred cEEEEEEcCc---hH----HHHHHHHH-CCCeEEEEcCC
Q 039151 192 YRVIAYDFGI---KH----NILRRLAS-YGCQIIVVPST 222 (279)
Q Consensus 192 ~~I~viD~G~---k~----~I~r~L~~-~G~~v~vvp~~ 222 (279)
++|++|-+.. .. .+.+.+.+ .|++++++...
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~ 40 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVP 40 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 3677776532 22 34555666 78999888653
No 262
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=23.53 E-value=2.1e+02 Score=20.64 Aligned_cols=77 Identities=16% Similarity=-0.031 Sum_probs=42.7
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCCC--eEEEEcCCCCh-hhhhc-----cCCCeEEEcCCCCCCCCC-hHHHHHHHHH
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYGC--QIIVVPSTWPA-SETLK-----LKPDGVLFSNGPGDPSAV-PYAVAIVKEL 258 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G~--~v~vvp~~~~~-~~i~~-----~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~ 258 (279)
..++|+++|--. ...+.+.|...|+ .+..+.....+ +.+.. ..||.||+--.- |... -..++.+++.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINM--PGINGWELIDLFKQH 85 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSC--SSSCHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCC--CCCCHHHHHHHHHHh
Confidence 357899998643 3345566777888 55544321111 22333 579998884221 2222 2456667763
Q ss_pred ----HCCCCEeeec
Q 039151 259 ----LGKVPVFGIC 268 (279)
Q Consensus 259 ----~~~~PILGIC 268 (279)
....|++-+.
T Consensus 86 ~~~~~~~~~ii~~t 99 (146)
T 3ilh_A 86 FQPMKNKSIVCLLS 99 (146)
T ss_dssp CGGGTTTCEEEEEC
T ss_pred hhhccCCCeEEEEe
Confidence 3567776554
No 263
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=23.53 E-value=99 Score=28.52 Aligned_cols=82 Identities=16% Similarity=0.271 Sum_probs=45.8
Q ss_pred cEEEEEEc--Cc---hHHHHHHHHHC--CCeEEEEcCCCChhh---hhccCCCeEEEcCCCCCC-------CC-C--hHH
Q 039151 192 YRVIAYDF--GI---KHNILRRLASY--GCQIIVVPSTWPASE---TLKLKPDGVLFSNGPGDP-------SA-V--PYA 251 (279)
Q Consensus 192 ~~I~viD~--G~---k~~I~r~L~~~--G~~v~vvp~~~~~~~---i~~~~~DgIiLSgGPGdp-------~~-~--~~~ 251 (279)
..++.++. |. ...+++++++. +..+.+ +.-.+.++ +.+..+|+|+++.++|.. .. . ...
T Consensus 166 ~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv-~~v~~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~ 244 (404)
T 1eep_A 166 VDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITA 244 (404)
T ss_dssp CSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHH
T ss_pred CCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEE-cCCCcHHHHHHHHhcCCCEEEECCCCCcCcCccccCCCCcchHHH
Confidence 34566554 32 24456777665 666554 22223333 335679999997777641 11 1 123
Q ss_pred HHHHHHHHC--CCCEe---eecHHHHHH
Q 039151 252 VAIVKELLG--KVPVF---GICMGHQLL 274 (279)
Q Consensus 252 i~~Ir~~~~--~~PIL---GICLGhQLL 274 (279)
+..++++.. ++|++ ||--|..+.
T Consensus 245 l~~v~~~~~~~~ipVia~GGI~~~~d~~ 272 (404)
T 1eep_A 245 ICDVYEACNNTNICIIADGGIRFSGDVV 272 (404)
T ss_dssp HHHHHHHHTTSSCEEEEESCCCSHHHHH
T ss_pred HHHHHHHHhhcCceEEEECCCCCHHHHH
Confidence 455555553 79999 677666655
No 264
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=23.48 E-value=25 Score=27.97 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=19.5
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHH
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITR 123 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~ 123 (279)
+..++++||++-||| .++|++.+
T Consensus 11 ~seNfdeylkalGv~----~~~rk~a~ 33 (137)
T 2g7b_A 11 RSENFEELLKVLGVN----VMLRKIAV 33 (137)
T ss_dssp EEECHHHHHHHTTCC----HHHHHHHH
T ss_pred eccCHHHHHHHcCCC----HHHHhhhh
Confidence 457899999999995 68898887
No 265
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=23.45 E-value=1.9e+02 Score=21.36 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=40.1
Q ss_pred ccEEEEEEcCc-h-HHHHHHHHHCCCeEEEEcCCCChh-hhhccCC-CeEEEcCCCCCCCCC-hHHHHHHHHHHCCCCEe
Q 039151 191 TYRVIAYDFGI-K-HNILRRLASYGCQIIVVPSTWPAS-ETLKLKP-DGVLFSNGPGDPSAV-PYAVAIVKELLGKVPVF 265 (279)
Q Consensus 191 ~~~I~viD~G~-k-~~I~r~L~~~G~~v~vvp~~~~~~-~i~~~~~-DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~PIL 265 (279)
.++|+++|--. . ..+.+.|. .|+++..+.....+- .+....| |.||+--.- |... -..++.+++.....|++
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~-~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~~~~~~ii 80 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLS-FDFEVTTCESGPEALACIKKSDPFSVIMVDMRM--PGMEGTEVIQKARLISPNSVYL 80 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCCSEEEEESCC--SSSCHHHHHHHHHHHCSSCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHhc-cCceEEEeCCHHHHHHHHHcCCCCCEEEEeCCC--CCCcHHHHHHHHHhcCCCcEEE
Confidence 36899998643 2 33444454 588887664321221 2223454 988884221 2222 23455566544677877
Q ss_pred eec
Q 039151 266 GIC 268 (279)
Q Consensus 266 GIC 268 (279)
-+.
T Consensus 81 ~~s 83 (151)
T 3kcn_A 81 MLT 83 (151)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 266
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=23.41 E-value=1.4e+02 Score=26.49 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=33.3
Q ss_pred CccEEEEEEcCchH--HHHHHHHHC-CCeEEEE-cCC---------CChhhhhc--cCCCeEEEc
Q 039151 190 KTYRVIAYDFGIKH--NILRRLASY-GCQIIVV-PST---------WPASETLK--LKPDGVLFS 239 (279)
Q Consensus 190 ~~~~I~viD~G~k~--~I~r~L~~~-G~~v~vv-p~~---------~~~~~i~~--~~~DgIiLS 239 (279)
+++||++|-+|.-. ..++.|.+. ++++.-+ ..+ .+.+++++ .++|.|+|+
T Consensus 24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~~g~~~~~~~~~ll~~~~~vD~V~i~ 88 (330)
T 4ew6_A 24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTVEGVNSYTTIEAMLDAEPSIDAVSLC 88 (330)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCCTTSEEESSHHHHHHHCTTCCEEEEC
T ss_pred CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhhcCCCccCCHHHHHhCCCCCCEEEEe
Confidence 35799999998643 467778765 6666543 211 24566654 379999996
No 267
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=23.36 E-value=18 Score=28.68 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=20.9
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRL 125 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 125 (279)
+..++++||++-||| .++|++.+.+
T Consensus 13 sseNfdeylkalGv~----~~~rk~a~~~ 37 (133)
T 1ftp_A 13 SQTNFEEYMKAIGVG----AIERKAGLAL 37 (133)
T ss_dssp EEESHHHHHHHTTCC----HHHHHHHTTC
T ss_pred cccCHHHHHHHhCCC----HHHHHHhhcC
Confidence 467899999999995 6888888765
No 268
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=23.22 E-value=3e+02 Score=24.26 Aligned_cols=70 Identities=21% Similarity=0.192 Sum_probs=40.3
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCC----CChhhhhccCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCE
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPST----WPASETLKLKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPV 264 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~----~~~~~i~~~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PI 264 (279)
.+|++|..-- ...+.+.-...|+....-.|- +....-.-..||.||+. ||... ...|+++. -++|+
T Consensus 71 ~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~----Dp~~d---~~ai~EA~~l~IP~ 143 (252)
T 3u5c_A 71 EDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVT----DPRSD---AQAIKEASYVNIPV 143 (252)
T ss_dssp GGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEES----CTTTT---HHHHHHHHTTTCCE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEe----CCccc---hHHHHHHHHcCCCE
Confidence 3577775421 233455555667765443331 11111111369999996 66543 45566666 59999
Q ss_pred eeec
Q 039151 265 FGIC 268 (279)
Q Consensus 265 LGIC 268 (279)
.|+|
T Consensus 144 Ial~ 147 (252)
T 3u5c_A 144 IALT 147 (252)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
No 269
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=23.20 E-value=1.9e+02 Score=20.06 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=40.3
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCCEeee
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~PILGI 267 (279)
++|+++|--. ...+.+.|...|+.+........+ +.+....||.+++--. -|... -..++.+++.....|++-+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 3688888643 344556778889987655432111 2233457998888321 13222 1234444433346787765
Q ss_pred c
Q 039151 268 C 268 (279)
Q Consensus 268 C 268 (279)
.
T Consensus 79 s 79 (121)
T 2pl1_A 79 T 79 (121)
T ss_dssp E
T ss_pred e
Confidence 3
No 270
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=23.18 E-value=16 Score=28.99 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.3
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHhh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRLR 126 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~iR 126 (279)
+..++++||++-||| .++|++.+.+.
T Consensus 12 sseNfdeylkalGv~----~~~rk~a~~~k 37 (133)
T 1lpj_A 12 SSDNFEGYMLALGID----FATRKIAKLLK 37 (133)
T ss_dssp EEESHHHHHHHHTCC----HHHHHHHTTCC
T ss_pred cCcCHHHHHHHhCCC----HHHHHHHHhCC
Confidence 467899999999995 68898888653
No 271
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=23.02 E-value=2.2e+02 Score=22.57 Aligned_cols=75 Identities=16% Similarity=-0.026 Sum_probs=42.2
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCCEeee
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~PILGI 267 (279)
++|+++|--. ...+.+.|...|+.+..+.....+ +.+....||.+|+--. -|... -..++.+++.....|++-+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~lr~~~~~~~ii~l 80 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVHDGWEILKSMRESGVNTPVLML 80 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5799998643 344556777789988755321111 2233457999888422 12222 2334444443357888766
Q ss_pred c
Q 039151 268 C 268 (279)
Q Consensus 268 C 268 (279)
.
T Consensus 81 s 81 (225)
T 1kgs_A 81 T 81 (225)
T ss_dssp E
T ss_pred e
Confidence 4
No 272
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=23.00 E-value=1.1e+02 Score=25.47 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=26.3
Q ss_pred HHHHHHHHHCCCe-EEEEcCCCChh-------hhhccCCCeEEEcC
Q 039151 203 HNILRRLASYGCQ-IIVVPSTWPAS-------ETLKLKPDGVLFSN 240 (279)
Q Consensus 203 ~~I~r~L~~~G~~-v~vvp~~~~~~-------~i~~~~~DgIiLSg 240 (279)
..+.+.+.+.|+. +.+.+.+.+.+ .+...++||||+.+
T Consensus 30 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 30 DGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp HHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 4466777889999 87776654432 23346899999986
No 273
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=22.96 E-value=39 Score=26.13 Aligned_cols=72 Identities=18% Similarity=0.125 Sum_probs=39.0
Q ss_pred CccEEEEEEc--CchHHHHHHHHHCCCeEEEEcCC-CC-hhhhhccCCCeEEEcCCCCCCCCCh-HHHHHHHHHHCCCCE
Q 039151 190 KTYRVIAYDF--GIKHNILRRLASYGCQIIVVPST-WP-ASETLKLKPDGVLFSNGPGDPSAVP-YAVAIVKELLGKVPV 264 (279)
Q Consensus 190 ~~~~I~viD~--G~k~~I~r~L~~~G~~v~vvp~~-~~-~~~i~~~~~DgIiLSgGPGdp~~~~-~~i~~Ir~~~~~~PI 264 (279)
.++||+++|= -.-..+.+.|++.|+++.-.-.+ .. .+.+....||.+++== .=|.... ...+.+|+ .++|+
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~DlvllDi--~mP~~~G~el~~~lr~--~~ipv 82 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDV--NLDGEPSYPVADILAE--RNVPF 82 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEECS--SSSSCCSHHHHHHHHH--TCCSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEEec--CCCCCCHHHHHHHHHc--CCCCE
Confidence 4579999974 23455667788899976421111 11 1223346899888710 0133322 23444443 47786
Q ss_pred e
Q 039151 265 F 265 (279)
Q Consensus 265 L 265 (279)
+
T Consensus 83 I 83 (123)
T 2lpm_A 83 I 83 (123)
T ss_dssp C
T ss_pred E
Confidence 5
No 274
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=22.94 E-value=1.5e+02 Score=21.93 Aligned_cols=77 Identities=9% Similarity=-0.007 Sum_probs=40.6
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCC--CeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCC
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYG--CQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVP 263 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G--~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~P 263 (279)
..++|+++|--. ...+.+.|.+.| +.+..+.....+ +.+....||.||+--.- |... -..++.+++.....|
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l--~~~~g~~~~~~l~~~~~~~~ 96 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEM--PVKTGLEVLEWIRSEKLETK 96 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSC--SSSCHHHHHHHHHHTTCSCE
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCC--CCCcHHHHHHHHHHhCCCCe
Confidence 457999998643 344556677776 344444321111 22334579988884221 2221 234455554435778
Q ss_pred Eeeec
Q 039151 264 VFGIC 268 (279)
Q Consensus 264 ILGIC 268 (279)
++-+.
T Consensus 97 ii~ls 101 (150)
T 4e7p_A 97 VVVVT 101 (150)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87665
No 275
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=22.90 E-value=2.8e+02 Score=26.02 Aligned_cols=30 Identities=23% Similarity=0.089 Sum_probs=21.8
Q ss_pred cEEEEEEcCchH--HHHHHHHHCCCeEEEEcC
Q 039151 192 YRVIAYDFGIKH--NILRRLASYGCQIIVVPS 221 (279)
Q Consensus 192 ~~I~viD~G~k~--~I~r~L~~~G~~v~vvp~ 221 (279)
++|.+|-.|-.. .+.+.|.++|++|.+...
T Consensus 20 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~ 51 (491)
T 2f00_A 20 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDL 51 (491)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEEEcCHHHHHHHHHHHHhCCCeEEEECC
Confidence 478888886532 377888888888887654
No 276
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=22.90 E-value=2.2e+02 Score=25.26 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=31.6
Q ss_pred CccEEEEEEcCchH--HHHHHHHHC-CCeEEEE-cCC----------------CChhhhhc-cCCCeEEEc
Q 039151 190 KTYRVIAYDFGIKH--NILRRLASY-GCQIIVV-PST----------------WPASETLK-LKPDGVLFS 239 (279)
Q Consensus 190 ~~~~I~viD~G~k~--~I~r~L~~~-G~~v~vv-p~~----------------~~~~~i~~-~~~DgIiLS 239 (279)
+++||++|-+|.-. .+++.|.+. ++++..+ ..+ .+.+++++ .++|.|+|+
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~ 96 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVP 96 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEEC
T ss_pred CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEC
Confidence 35789999998643 467777776 6776533 222 13344443 368999996
No 277
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=22.71 E-value=17 Score=28.60 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=20.6
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRL 125 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 125 (279)
+..++++||++-||| .++|++.+.+
T Consensus 11 ~seNfdeylkalGv~----~~~rk~a~~~ 35 (126)
T 2qo4_A 11 AQENYEEFLRAISLP----EEVIKLAKDV 35 (126)
T ss_dssp EEESHHHHHHHTTCC----HHHHHHTTTC
T ss_pred cCcCHHHHHHHcCCC----HHHHHhhccC
Confidence 467899999999995 7788888755
No 278
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=22.69 E-value=73 Score=23.78 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=40.2
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCCh-hhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHH----CC
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWPA-SETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELL----GK 261 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~~-~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~----~~ 261 (279)
.+++|+++|=-. ...+.+.|.+.|+.+..+.....+ +.+....||.||+--. -|... -..++.+|+.- ..
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~~g~~~~~~lr~~~~~~~~~ 90 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGMNGLDMLKQLRVMQASGMRY 90 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHHHTTCCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhchhccCCC
Confidence 357999998643 334555677789888765321111 1233457998888311 12222 24455666543 24
Q ss_pred CCEeeec
Q 039151 262 VPVFGIC 268 (279)
Q Consensus 262 ~PILGIC 268 (279)
.|++-+.
T Consensus 91 ~pii~~s 97 (143)
T 3m6m_D 91 TPVVVLS 97 (143)
T ss_dssp CCEEEEE
T ss_pred CeEEEEe
Confidence 6877653
No 279
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=22.68 E-value=1e+02 Score=22.64 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=42.8
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHH--CCCCE
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELL--GKVPV 264 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~--~~~PI 264 (279)
..+|+++|--. ...+.+.|.+.|+++........ .+.+....||.||+-=. -|... -..++.+|+.- ...|+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHcCCCcCCccE
Confidence 35899998642 34455667888998775532111 12233457998888321 13222 23455555532 46888
Q ss_pred eeec
Q 039151 265 FGIC 268 (279)
Q Consensus 265 LGIC 268 (279)
+-+.
T Consensus 82 i~~t 85 (136)
T 3t6k_A 82 LMLT 85 (136)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
No 280
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=22.60 E-value=2e+02 Score=20.14 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=40.7
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCCEeee
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~PILGI 267 (279)
.+|+++|--. ...+.+.|...|+.+........ .+.+....||.+|+--. -|... -..++.+++.....|++-+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMK--IPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 4799998643 33455667778988765432111 12223357998888321 12221 2344555544356787665
Q ss_pred c
Q 039151 268 C 268 (279)
Q Consensus 268 C 268 (279)
.
T Consensus 82 s 82 (124)
T 1srr_A 82 T 82 (124)
T ss_dssp E
T ss_pred E
Confidence 4
No 281
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=22.58 E-value=1.8e+02 Score=25.17 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=38.4
Q ss_pred EEEEEEcCchHHHHHHHHHCCCeEEEEcCC-------CChhhhhc----cCCCeEEEcCCCCCCCCC---hHHHHHHHHH
Q 039151 193 RVIAYDFGIKHNILRRLASYGCQIIVVPST-------WPASETLK----LKPDGVLFSNGPGDPSAV---PYAVAIVKEL 258 (279)
Q Consensus 193 ~I~viD~G~k~~I~r~L~~~G~~v~vvp~~-------~~~~~i~~----~~~DgIiLSgGPGdp~~~---~~~i~~Ir~~ 258 (279)
+|++.+.+. .++.+.+...|+++..+|.+ .+.+++.+ .+++.|+++ .|.+|.-. ...++.|.++
T Consensus 111 ~vl~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~-~p~nptG~~~~~~~l~~i~~~ 188 (391)
T 3dzz_A 111 QILVQEPVY-NMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC-NPHNPIGYAWSEEEVKRIAEL 188 (391)
T ss_dssp EEEECSSCC-HHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE-SSBTTTTBCCCHHHHHHHHHH
T ss_pred eEEECCCCc-HHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE-CCCCCCCcccCHHHHHHHHHH
Confidence 455555443 45667778889999888763 45555432 356777775 46666432 2345555544
Q ss_pred H
Q 039151 259 L 259 (279)
Q Consensus 259 ~ 259 (279)
.
T Consensus 189 ~ 189 (391)
T 3dzz_A 189 C 189 (391)
T ss_dssp H
T ss_pred H
Confidence 4
No 282
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=22.55 E-value=19 Score=28.94 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRL 125 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 125 (279)
+..++++||++-||| .++|++.+.+
T Consensus 16 sseNfdeylkalGv~----~~~rk~a~~~ 40 (141)
T 2rcq_A 16 SNENFEGYMKALDID----FATRKIAVRL 40 (141)
T ss_dssp EEESHHHHHHHTTCC----HHHHHHHTTC
T ss_pred cccCHHHHHHHhCCC----HHHHHHhhcC
Confidence 567899999999995 7889888765
No 283
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=22.37 E-value=20 Score=28.58 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=20.8
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRL 125 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 125 (279)
+..++++||++-||| .++|++.+.+
T Consensus 14 sseNfdeylkalGv~----~~~rk~a~~~ 38 (135)
T 1vyf_A 14 ESHNFDAVMSKLGVS----WATRQIGNTV 38 (135)
T ss_dssp EEESHHHHHHHTTCC----HHHHHHHTTC
T ss_pred cCcCHHHHHHHcCCC----HHHHHhhccC
Confidence 457899999999994 6889888765
No 284
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=22.16 E-value=1.5e+02 Score=27.39 Aligned_cols=76 Identities=26% Similarity=0.305 Sum_probs=43.4
Q ss_pred EcCchHHHHHHHHHC-CCeEEEEcCCCChh---hhhccCCCeEEEcCCCCCCCC-Ch---HHHHHHHHHH-CCCCEe---
Q 039151 198 DFGIKHNILRRLASY-GCQIIVVPSTWPAS---ETLKLKPDGVLFSNGPGDPSA-VP---YAVAIVKELL-GKVPVF--- 265 (279)
Q Consensus 198 D~G~k~~I~r~L~~~-G~~v~vvp~~~~~~---~i~~~~~DgIiLSgGPGdp~~-~~---~~i~~Ir~~~-~~~PIL--- 265 (279)
|-...+..+++|++. +..+.+=-. .+.+ ...+...|+|++||..|.-.+ .. ..+..+++.+ .++||+
T Consensus 201 d~~~~w~~i~~lr~~~~~PvivK~v-~~~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~G 279 (352)
T 3sgz_A 201 KASFCWNDLSLLQSITRLPIILKGI-LTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDG 279 (352)
T ss_dssp CTTCCHHHHHHHHHHCCSCEEEEEE-CSHHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEec-CcHHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEEC
Confidence 445577888888764 555433211 2333 333568999999886553111 12 3344445555 479998
Q ss_pred eecHHHHHH
Q 039151 266 GICMGHQLL 274 (279)
Q Consensus 266 GICLGhQLL 274 (279)
||.-|..++
T Consensus 280 GI~~g~Dv~ 288 (352)
T 3sgz_A 280 GVRTGTDVL 288 (352)
T ss_dssp SCCSHHHHH
T ss_pred CCCCHHHHH
Confidence 456666555
No 285
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=22.13 E-value=59 Score=26.17 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=17.1
Q ss_pred CCCcce--eEEEecCCCEEEEEee
Q 039151 2 PWNVAN--ARLVLEDGSIWRAKSF 23 (279)
Q Consensus 2 ~~~~~~--a~L~LedG~~f~G~~f 23 (279)
||+..+ |.|..+||++|.|-..
T Consensus 28 PYS~F~VGAAll~~dG~iytG~NV 51 (138)
T 3dmo_A 28 PYSNFKVGAALVTNDGKVFHGCNV 51 (138)
T ss_dssp TTTCCCEEEEEEETTSCEEEEECB
T ss_pred CcCCCCEEEEEEeCCCCEEEEEee
Confidence 666643 7889999999988764
No 286
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=22.11 E-value=2.9e+02 Score=24.67 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=31.4
Q ss_pred ccEEEEEEcCch--HHHHHHHHHCCCeEEEE-cCC-----------------CChhhhhc-cCCCeEEEc
Q 039151 191 TYRVIAYDFGIK--HNILRRLASYGCQIIVV-PST-----------------WPASETLK-LKPDGVLFS 239 (279)
Q Consensus 191 ~~~I~viD~G~k--~~I~r~L~~~G~~v~vv-p~~-----------------~~~~~i~~-~~~DgIiLS 239 (279)
++||++|-+|.. ..+...+...++++.-+ ..+ .+.+++++ .++|.|+|+
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~ 95 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSA 95 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEEC
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEe
Confidence 468999998853 34566676778887644 111 23445543 368999996
No 287
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=22.11 E-value=18 Score=28.49 Aligned_cols=25 Identities=16% Similarity=0.293 Sum_probs=20.7
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRL 125 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 125 (279)
+..++++||++-||| .++|++.+.+
T Consensus 10 ~seNfdeymkalGv~----~~~rk~a~~~ 34 (125)
T 1p6p_A 10 AQENYENFLRTVGLP----EDIIKVAKDV 34 (125)
T ss_dssp EEESHHHHHHHHTCC----HHHHHHHTTC
T ss_pred cccCHHHHHHHhCCC----HHHHHhhccC
Confidence 467899999999995 7788888765
No 288
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=22.02 E-value=2.4e+02 Score=22.53 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=42.1
Q ss_pred ccEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCCEee
Q 039151 191 TYRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVPVFG 266 (279)
Q Consensus 191 ~~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~PILG 266 (279)
.++|+++|--. ...+.+.|...|+++........ .+.+....||.+|+--. -|... -..++.+++.....|++-
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEEE
Confidence 47899998643 34566677788998765432111 12233457999888422 12222 233444544335788875
Q ss_pred e
Q 039151 267 I 267 (279)
Q Consensus 267 I 267 (279)
+
T Consensus 85 l 85 (233)
T 1ys7_A 85 L 85 (233)
T ss_dssp E
T ss_pred E
Confidence 5
No 289
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=22.01 E-value=66 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=23.1
Q ss_pred CCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 232 KPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 232 ~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
.||.||+. ||... ...|+++. -++|+.|||
T Consensus 157 ~Pdll~v~----Dp~~e---~~ai~EA~~l~IPvIaiv 187 (231)
T 3bbn_B 157 LPDIVIIV----DQQEE---YTALRECITLGIPTICLI 187 (231)
T ss_dssp CCSEEEES----CTTTT---HHHHHHHHTTTCCEEECC
T ss_pred CCCEEEEe----CCccc---cHHHHHHHHhCCCEEEEe
Confidence 59999996 66543 35667777 599999998
No 290
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=21.66 E-value=2.2e+02 Score=20.25 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=40.6
Q ss_pred cEEEEEEcCc--hHHHHHHHHHCCCeEEEEcCCCC-hhhhhccCCCeEEEcCCCCCCCCC-hHHHHHHHHHHCCCCEeee
Q 039151 192 YRVIAYDFGI--KHNILRRLASYGCQIIVVPSTWP-ASETLKLKPDGVLFSNGPGDPSAV-PYAVAIVKELLGKVPVFGI 267 (279)
Q Consensus 192 ~~I~viD~G~--k~~I~r~L~~~G~~v~vvp~~~~-~~~i~~~~~DgIiLSgGPGdp~~~-~~~i~~Ir~~~~~~PILGI 267 (279)
.+|+++|--. ...+.+.|...|+.+..+..... .+.+....||.+|+--. -|... -..++.+++.....|++-+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQKLMFPILML 81 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 4799998643 34455667778998765532111 11223347998888422 12221 2334444443346787765
Q ss_pred c
Q 039151 268 C 268 (279)
Q Consensus 268 C 268 (279)
.
T Consensus 82 s 82 (136)
T 1mvo_A 82 T 82 (136)
T ss_dssp E
T ss_pred E
Confidence 4
No 291
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=21.63 E-value=1.9e+02 Score=24.28 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=32.7
Q ss_pred ccEEEEEEcCchHHHHHHHHHCCCeEEEEcCC-C---Chhhhh----c--cCCCeEEEc
Q 039151 191 TYRVIAYDFGIKHNILRRLASYGCQIIVVPST-W---PASETL----K--LKPDGVLFS 239 (279)
Q Consensus 191 ~~~I~viD~G~k~~I~r~L~~~G~~v~vvp~~-~---~~~~i~----~--~~~DgIiLS 239 (279)
+++|++---.-...+.+.|+++|+++..+|.- . +.+++. . ..+|.||++
T Consensus 8 g~~vlvtr~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iift 66 (261)
T 1wcw_A 8 AVRVAYAGLRRKEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLAT 66 (261)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEe
Confidence 56888876432466788899999999877742 1 222221 1 269999996
No 292
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=21.62 E-value=84 Score=25.42 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=44.3
Q ss_pred CccEEEEEEcCc--hHHHHHHHHHCCC-eEEEEcCCCChhh-hhc-------------cCCCeEEEcCCCCCCCCC-hHH
Q 039151 190 KTYRVIAYDFGI--KHNILRRLASYGC-QIIVVPSTWPASE-TLK-------------LKPDGVLFSNGPGDPSAV-PYA 251 (279)
Q Consensus 190 ~~~~I~viD~G~--k~~I~r~L~~~G~-~v~vvp~~~~~~~-i~~-------------~~~DgIiLSgGPGdp~~~-~~~ 251 (279)
.+++|+++|--. ...+.+.|.+.|+ .+..+.....+-+ +.. ..||.||+-=. -|... -..
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~~G~el 137 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEMDGYEA 137 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSSCHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCCCHHHH
Confidence 357999998642 3445667888898 6766643222222 222 27998888311 13222 245
Q ss_pred HHHHHHHH----CCCCEeeec
Q 039151 252 VAIVKELL----GKVPVFGIC 268 (279)
Q Consensus 252 i~~Ir~~~----~~~PILGIC 268 (279)
++.||+.. ...|++-+.
T Consensus 138 ~~~lr~~~~~~~~~~piI~ls 158 (206)
T 3mm4_A 138 TREIRKVEKSYGVRTPIIAVS 158 (206)
T ss_dssp HHHHHHHHHTTTCCCCEEEEE
T ss_pred HHHHHhhhhhcCCCCcEEEEE
Confidence 56666642 468888665
No 293
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=21.60 E-value=75 Score=28.23 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=23.1
Q ss_pred cCCCeEEEcCCCCCCCCChHHHHHHHHHH-CCCCEeeec
Q 039151 231 LKPDGVLFSNGPGDPSAVPYAVAIVKELL-GKVPVFGIC 268 (279)
Q Consensus 231 ~~~DgIiLSgGPGdp~~~~~~i~~Ir~~~-~~~PILGIC 268 (279)
..||.||+. ||... ...|+++. -++|+.|||
T Consensus 157 ~~Pdll~V~----Dp~~e---~~Ai~EA~~l~IPvIaiv 188 (256)
T 2vqe_B 157 RLPDAIFVV----DPTKE---AIAVREARKLFIPVIALA 188 (256)
T ss_dssp SCCSEEEES----CTTTT---HHHHHHHHHTTCCCEECC
T ss_pred cCCCEEEEe----CCccc---hHHHHHHHHcCCCEEEEe
Confidence 379999996 66543 34566666 599999998
No 294
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=21.52 E-value=18 Score=28.67 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=20.7
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRL 125 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 125 (279)
+..++++||++-||| .++|++.+.+
T Consensus 11 ~seNfdeylkalGv~----~~~rk~a~~~ 35 (132)
T 1ifc_A 11 RNENYEKFMEKMGIN----VVKRKLGAHD 35 (132)
T ss_dssp EEESHHHHHHHHTCC----HHHHHHHTTC
T ss_pred cccCHHHHHHHcCCC----HHHHHHhccC
Confidence 467899999999994 6888888765
No 295
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=21.50 E-value=2.6e+02 Score=24.87 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=28.9
Q ss_pred ccEEEEEEcCch-HHHHHHHHHC-CCeEEEE-cC---------------CCChhhhhc-cCCCeEEEc
Q 039151 191 TYRVIAYDFGIK-HNILRRLASY-GCQIIVV-PS---------------TWPASETLK-LKPDGVLFS 239 (279)
Q Consensus 191 ~~~I~viD~G~k-~~I~r~L~~~-G~~v~vv-p~---------------~~~~~~i~~-~~~DgIiLS 239 (279)
++||++|-+|.- ...++.|.+. ++++..+ .. ..+.+++++ .++|.|+|+
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~ 72 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIA 72 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEEC
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEc
Confidence 367888888752 3455666654 5665533 11 124455543 378999996
No 296
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=21.04 E-value=4.6e+02 Score=23.63 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=41.0
Q ss_pred hHHHHHHhhhcCceeEEEecCCCCChHHHHHhhc-CCC--CCCCCcccccccCCeEEecCCCCCCCCCCccCCCCCccEE
Q 039151 118 TRAITRRLRQDGSLIGVLSTEESKSDQELLEMSR-SWD--IVGIDLISDVSGKEPFEWVESTKPDWDFNTHERNSKTYRV 194 (279)
Q Consensus 118 TRaLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~~-~~~--~~~~~lv~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 194 (279)
.+...+.||+.|.-...++.......++..+.+. ... ....+.+...+.-..+. . ...+|
T Consensus 34 a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~~~~~i~ts~~~~~~~~----------------~-~~~~v 96 (352)
T 3kc2_A 34 ASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVSPLQIIQSHTPYKSLV----------------N-KYSRI 96 (352)
T ss_dssp HHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCCCGGGEECTTGGGGGGT----------------T-TCSEE
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCCChhhEeehHHHHHHHH----------------h-cCCEE
Confidence 3456778999998887776543323333333332 122 21122222211111110 0 12367
Q ss_pred EEEEcCchHHHHHHHHHCCCeEEEE
Q 039151 195 IAYDFGIKHNILRRLASYGCQIIVV 219 (279)
Q Consensus 195 ~viD~G~k~~I~r~L~~~G~~v~vv 219 (279)
.++-- . .+.+.|++.|++..+.
T Consensus 97 ~viG~--~-~l~~~l~~~G~~~v~~ 118 (352)
T 3kc2_A 97 LAVGT--P-SVRGVAEGYGFQDVVH 118 (352)
T ss_dssp EEESS--T-THHHHHHHHTCSEEEE
T ss_pred EEECC--H-HHHHHHHhCCCeEecc
Confidence 66643 2 4677888999988765
No 297
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=20.95 E-value=88 Score=25.66 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=42.9
Q ss_pred EEEEEEc-Cch----HHHHHHHHHCCCeEEEEcCCC--------Chhhhhc--cCCCeEEEcCCCCCCCCChHHHHHHHH
Q 039151 193 RVIAYDF-GIK----HNILRRLASYGCQIIVVPSTW--------PASETLK--LKPDGVLFSNGPGDPSAVPYAVAIVKE 257 (279)
Q Consensus 193 ~I~viD~-G~k----~~I~r~L~~~G~~v~vvp~~~--------~~~~i~~--~~~DgIiLSgGPGdp~~~~~~i~~Ir~ 257 (279)
.|+++|| |+. ..+-+.|++.|+++.|+.+.. ..+. .+ ..+-++++| .||......+....+
T Consensus 23 ~v~v~~~~gltv~~~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~~~~-~~~l~G~~a~~fs---~dp~~~ak~l~~f~k 98 (173)
T 2j01_J 23 SFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELGLPE-LDGLQGPSAVVFY---EDPVAAAKTLVQFAK 98 (173)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEehhHHHHHHHhcCCCCc-cccccCCEEEEEe---CCHHHHHHHHHHHHH
Confidence 6899998 664 345566777899999987642 1222 11 256688887 466543223222222
Q ss_pred HH--CCCCEeeecHHHHH
Q 039151 258 LL--GKVPVFGICMGHQL 273 (279)
Q Consensus 258 ~~--~~~PILGICLGhQL 273 (279)
-. .+.-+.|-|+.-++
T Consensus 99 ~~~~~~l~ikgg~~eg~~ 116 (173)
T 2j01_J 99 SNPKGIPQVKSGLLQGQI 116 (173)
T ss_pred hCCCCCeEEEEEEECCEE
Confidence 22 23455566655443
No 298
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=20.90 E-value=1.8e+02 Score=23.58 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=36.3
Q ss_pred HHHHHH-CCCeEEEEcC-CC-C----hhhhhccCCCeEEEcCCCCCCCC-ChHHHHHHHHHH-CCCCEe
Q 039151 206 LRRLAS-YGCQIIVVPS-TW-P----ASETLKLKPDGVLFSNGPGDPSA-VPYAVAIVKELL-GKVPVF 265 (279)
Q Consensus 206 ~r~L~~-~G~~v~vvp~-~~-~----~~~i~~~~~DgIiLSgGPGdp~~-~~~~i~~Ir~~~-~~~PIL 265 (279)
.+.|++ .|.+++.+.. .. . .+.|.+.+.|.||....|-.+.. ..+.....|.++ .++|++
T Consensus 49 a~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~ 117 (152)
T 1b93_A 49 GNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVA 117 (152)
T ss_dssp HHHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHhCceeEEEEecCCCCCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEE
Confidence 355666 7888888742 11 0 12244568999999988744443 233444445555 799986
No 299
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=20.83 E-value=2.5e+02 Score=25.67 Aligned_cols=28 Identities=11% Similarity=-0.102 Sum_probs=16.5
Q ss_pred CccEEEEEEcCc----hHHHHHHHHHCC-CeEE
Q 039151 190 KTYRVIAYDFGI----KHNILRRLASYG-CQII 217 (279)
Q Consensus 190 ~~~~I~viD~G~----k~~I~r~L~~~G-~~v~ 217 (279)
+++||.+|-+|. -...++.+...+ +++.
T Consensus 36 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lv 68 (417)
T 3v5n_A 36 KRIRLGMVGGGSGAFIGAVHRIAARLDDHYELV 68 (417)
T ss_dssp CCEEEEEESCC--CHHHHHHHHHHHHTSCEEEE
T ss_pred CcceEEEEcCCCchHHHHHHHHHHhhCCCcEEE
Confidence 357899998884 233445555544 5554
No 300
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=20.76 E-value=18 Score=28.44 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=20.7
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRL 125 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 125 (279)
+..++++||++-||| .++|++.+.+
T Consensus 10 sseNfdeymkalGv~----~~~rk~a~~~ 34 (127)
T 1eal_A 10 SEKNYDEFMKRLALP----SDAIDKARNL 34 (127)
T ss_dssp EESCTTHHHHHHTCC----HHHHHHHTTC
T ss_pred cccCHHHHHHHhCCC----HHHHHhhhcC
Confidence 467899999999995 7788888755
No 301
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Probab=20.72 E-value=25 Score=28.28 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=15.6
Q ss_pred CCCCccccCCCHHHHHHHcCceEEe
Q 039151 90 IGTSNWRCAETLGNYLAERNIMGIY 114 (279)
Q Consensus 90 ~~~s~~~~~~sl~~~L~~~~ipgi~ 114 (279)
.-|+||||.+||.. ..+|..+-
T Consensus 29 ~LP~HWRsNKtLP~---~FkVvalg 50 (140)
T 1eaq_A 29 VLPTHWRSNKTLPI---AFKVVALG 50 (140)
T ss_dssp CCCSEEETTCCCSS---CCEEEESS
T ss_pred cCcchhccCCCCCC---ceEEEEec
Confidence 35899999999976 33455553
No 302
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=20.57 E-value=1.7e+02 Score=22.12 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=22.0
Q ss_pred HHHHHHHCCCeEEEEcCC-CChhhhhccCCCeEEE
Q 039151 205 ILRRLASYGCQIIVVPST-WPASETLKLKPDGVLF 238 (279)
Q Consensus 205 I~r~L~~~G~~v~vvp~~-~~~~~i~~~~~DgIiL 238 (279)
|.+.|.+.|+++++++.. .+.+++.. ++|.||+
T Consensus 22 ia~~l~~~g~~v~~~~~~~~~~~~l~~-~~d~ii~ 55 (148)
T 3f6r_A 22 LEELIAAGGHEVTLLNAADASAENLAD-GYDAVLF 55 (148)
T ss_dssp HHHHHHTTTCEEEEEETTTBCCTTTTT-TCSEEEE
T ss_pred HHHHHHhCCCeEEEEehhhCCHhHhcc-cCCEEEE
Confidence 445566679999998764 33445521 6898888
No 303
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=20.36 E-value=2.2e+02 Score=23.90 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=32.8
Q ss_pred cEEEEEEcC-----chHHHH-HHHHHCCCeEEEEcCCCChhhhh----ccCCCeEEE
Q 039151 192 YRVIAYDFG-----IKHNIL-RRLASYGCQIIVVPSTWPASETL----KLKPDGVLF 238 (279)
Q Consensus 192 ~~I~viD~G-----~k~~I~-r~L~~~G~~v~vvp~~~~~~~i~----~~~~DgIiL 238 (279)
.+|++--.+ +-.+++ ..|+..|++|.-+-.+.+.+++. +.+||.|.+
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 466665332 223444 56788999999887788877764 468999999
No 304
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=20.26 E-value=24 Score=28.80 Aligned_cols=25 Identities=4% Similarity=0.131 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHcCceEEecCchHHHHHHh
Q 039151 97 CAETLGNYLAERNIMGIYDVDTRAITRRL 125 (279)
Q Consensus 97 ~~~sl~~~L~~~~ipgi~gvDTRaLt~~i 125 (279)
+.+++++||++-||| .++|++.+.+
T Consensus 33 ssENfdeylkalGV~----~~~Rk~a~~~ 57 (149)
T 2f73_A 33 SQENFEAFMKAIGLP----EELIQKGKDI 57 (149)
T ss_dssp EEECHHHHHHHTTCC----HHHHHHHTTC
T ss_pred cCcCHHHHHHHcCCC----HHHHhhhccC
Confidence 567899999999995 6888888765
No 305
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=20.12 E-value=2.1e+02 Score=24.58 Aligned_cols=50 Identities=16% Similarity=0.311 Sum_probs=33.4
Q ss_pred CccEEEEEEcC-c-h---HHHHHHHHHCCCeEEEEcCC----CChhhh----hc-cCCCeEEEc
Q 039151 190 KTYRVIAYDFG-I-K---HNILRRLASYGCQIIVVPST----WPASET----LK-LKPDGVLFS 239 (279)
Q Consensus 190 ~~~~I~viD~G-~-k---~~I~r~L~~~G~~v~vvp~~----~~~~~i----~~-~~~DgIiLS 239 (279)
.+++|++.--. - . ..+.+.|+++|+++..+|.- .+.+++ .. .++|.||++
T Consensus 20 ~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifT 83 (286)
T 1jr2_A 20 RHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFT 83 (286)
T ss_dssp --CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEEC
T ss_pred cCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEe
Confidence 35789998764 2 2 66888999999999888742 122221 11 478999997
Done!