BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039152
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 25/195 (12%)
Query: 75 RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVI-- 132
+K+ FF I N ++ LDLT +L LPS + L+ L L L + +++ I
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA 321
Query: 133 SDLKKLEILCLHGSSIYQLPVEVG---QLTQLRSLDLRH-------CSNLQVIPLNKHLP 182
S+ L L + G++ +L + G L LR LDL H C NLQ+ ++L
Sbjct: 322 SNFPSLTHLSIKGNT-KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL----RNLS 376
Query: 183 NLTSLELEVNDANTLPRGGLFLEKPERIDLD-ANVRLKDQDTVQLWGIEELSLAELLDHI 241
+L SL L N+ +L + F E P+ LD A RLK +D + + L L ++L
Sbjct: 377 HLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTRLKVKDAQSPF--QNLHLLKVL--- 430
Query: 242 KNFVNKLVKVGSSQL 256
N + L+ + S QL
Sbjct: 431 -NLSHSLLDISSEQL 444
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMA-VISDLKKLEILCLHG- 145
+ ++ ++ L L + SLP+SI L NL +L + + L + I L KLE L L G
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 146 SSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLE 188
+++ P G L+ L L+ CSNL +PL+ H LT LE
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH--RLTQLE 280
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 95 VLDLTDMNLLSLPSSIGLLTNLHTLCLYSCI----LKDMAVISD-------LKKLEILCL 143
L L L +LP+SI L L L + +C L + +D L L+ L L
Sbjct: 131 TLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190
Query: 144 HGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELE 190
+ I LP + L L+SL +R+ + P HLP L L+L
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 75 RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL--LTNLHTLCLYSCILKDMAVI 132
R N +IP + +R LDL ++ L S L NL L L C LKD+ +
Sbjct: 115 RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNL 174
Query: 133 SDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCSNLQVIPLNKH----LPNLTSL 187
+ L +LE L L G+ + + P LT LR L L H QV + ++ L +L L
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA---QVATIERNAFDDLKSLEEL 231
Query: 188 ELEVNDANTLPRGGLF--LEKPERIDLDANVRLKDQDTVQL-WGIEE 231
L N+ +LP LF L + ER+ L+ N + D + L W ++E
Sbjct: 232 NLSHNNLMSLPH-DLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKE 277
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 75 RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL--LTNLHTLCLYSCILKDMAVI 132
R N +IP + +R LDL ++ L S L NL L L C LKD+ +
Sbjct: 115 RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNL 174
Query: 133 SDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCSNLQVIPLNKH----LPNLTSL 187
+ L +LE L L G+ + + P LT LR L L H QV + ++ L +L L
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA---QVATIERNAFDDLKSLEEL 231
Query: 188 ELEVNDANTLPRGGLF--LEKPERIDLDANVRLKDQDTVQL-WGIEE 231
L N+ +LP LF L + ER+ L+ N + D + L W ++E
Sbjct: 232 NLSHNNLMSLPH-DLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKE 277
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 10/167 (5%)
Query: 75 RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL--LTNLHTLCLYSCILKDMAVI 132
R N +IP + +R LDL ++ LS S L+NL L L C L+++ +
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL 203
Query: 133 SDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCSNLQVIPLNK--HLPNLTSLEL 189
+ L KL+ L L G+ + + P L L+ L + S +QVI N +L +L + L
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINL 262
Query: 190 EVNDANTLPRGGLF--LEKPERIDLDANVRLKDQDTVQL-WGIEELS 233
N+ LP LF L ERI L N + D + L W I++++
Sbjct: 263 AHNNLTLLPH-DLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMA 308
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 32/153 (20%)
Query: 75 RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISD 134
+K+ A+ QN L S+ Q+ + + +D+ + I L N+ L L L D++ + +
Sbjct: 28 KKSVTDAVTQNELNSIDQI-IANNSDIKSVQ---GIQYLPNVRYLALGGNKLHDISALKE 83
Query: 135 LKKLEILCLHGSSIYQLPVEV-------------------------GQLTQLRSLDLRHC 169
L L L L G+ + LP V +LT L L+L H
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH- 142
Query: 170 SNLQVIPLN--KHLPNLTSLELEVNDANTLPRG 200
+ LQ +P L NLT L+L N +LP G
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 12/148 (8%)
Query: 77 NSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGL---LTNLHTLCLYSCILKDMA--V 131
N +P + + + + L +TD L +LP IG+ L NL L L LK + V
Sbjct: 71 NKLQTLPAGIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRLDRNQLKSLPPRV 128
Query: 132 ISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLDLRHCSNLQVIPLNK--HLPNLTSLE 188
L KL L L + + LP V +LT L+ L L + + L+ +P L L +L+
Sbjct: 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLK 187
Query: 189 LEVNDANTLPRGGL-FLEKPERIDLDAN 215
L+ N +P G LEK + + L N
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 108 SSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167
+ +G+LTNL L L LKD+ ++ L L L L + I L G LT+L L L
Sbjct: 214 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLG 272
Query: 168 HCSNLQVIPLNKHLPNLTSLELEVN 192
+ PL L LT+LEL N
Sbjct: 273 ANQISNISPL-AGLTALTNLELNEN 296
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 113 LTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNL 172
LTNL +L + + D+ + L L+ L L+G+ + + + LT L LDL +
Sbjct: 197 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQIS 255
Query: 173 QVIPLNKHLPNLTSLELEVND-ANTLPRGGL 202
+ PL L LT L+L N +N P GL
Sbjct: 256 NLAPL-SGLTKLTELKLGANQISNISPLAGL 285
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 138 LEILCLHGSSIYQLPVEVGQLTQLRSLDLRH 168
L L L+G+S+ +LP E+ L+ LR LDL H
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSH 279
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 108 SSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167
+ +G+LTNL L L LKD+ ++ L L L L + I L G LT+L L L
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLG 269
Query: 168 HCSNLQVIPLNKHLPNLTSLELEVN 192
+ PL L LT+LEL N
Sbjct: 270 ANQISNISPL-AGLTALTNLELNEN 293
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 113 LTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNL 172
LTNL +L + + D+ + L L+ L L+G+ + + + LT L LDL +
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQIS 252
Query: 173 QVIPLNKHLPNLTSLELEVND-ANTLPRGGL 202
+ PL L LT L+L N +N P GL
Sbjct: 253 NLAPL-SGLTKLTELKLGANQISNISPLAGL 282
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 108 SSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167
+ +G+LTNL L L LKD+ ++ L L L L + I L G LT+L L L
Sbjct: 210 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLG 268
Query: 168 HCSNLQVIPLNKHLPNLTSLELEVN 192
+ PL L LT+LEL N
Sbjct: 269 ANQISNISPL-AGLTALTNLELNEN 292
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 113 LTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNL 172
LTNL +L + + D+ + L L+ L L+G+ + + + LT L LDL +
Sbjct: 193 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQIS 251
Query: 173 QVIPLNKHLPNLTSLELEVND-ANTLPRGGL 202
+ PL L LT L+L N +N P GL
Sbjct: 252 NLAPL-SGLTKLTELKLGANQISNISPLAGL 281
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 108 SSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167
+ +G+LTNL L L LKD+ ++ L L L L + I L G LT+L L L
Sbjct: 210 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLG 268
Query: 168 HCSNLQVIPLNKHLPNLTSLELEVN 192
+ PL L LT+LEL N
Sbjct: 269 ANQISNISPL-AGLTALTNLELNEN 292
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 113 LTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNL 172
LTNL +L + + D+ + L L+ L L+G+ + + + LT L LDL +
Sbjct: 193 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQIS 251
Query: 173 QVIPLNKHLPNLTSLELEVND-ANTLPRGGL 202
+ PL L LT L+L N +N P GL
Sbjct: 252 NLAPL-SGLTKLTELKLGANQISNISPLAGL 281
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 129 MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSL 187
+A + +L L L + + +L V+ G L L +LDL H + LQ +P L + LP LT L
Sbjct: 48 LATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVL 105
Query: 188 ELEVNDANTLPRGGL 202
++ N +LP G L
Sbjct: 106 DVSFNRLTSLPLGAL 120
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 108 SSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167
+ +G+LTNL L L LKD+ ++ L L L L + I L G LT+L L L
Sbjct: 215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLG 273
Query: 168 HCSNLQVIPLNKHLPNLTSLELEVN 192
+ PL L LT+LEL N
Sbjct: 274 ANQISNISPL-AGLTALTNLELNEN 297
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 113 LTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNL 172
LTNL +L + + D+ + L L+ L L+G+ + + + LT L LDL +
Sbjct: 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQIS 256
Query: 173 QVIPLNKHLPNLTSLELEVND-ANTLPRGGL 202
+ PL L LT L+L N +N P GL
Sbjct: 257 NLAPL-SGLTKLTELKLGANQISNISPLAGL 286
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 129 MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSL 187
+A + +L L L + + +L V+ G L L +LDL H + LQ +P L + LP LT L
Sbjct: 48 LATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVL 105
Query: 188 ELEVNDANTLPRGGL 202
++ N +LP G L
Sbjct: 106 DVSFNRLTSLPLGAL 120
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 129 MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSL 187
+A + +L L L + + +L V+ G L L +LDL H + LQ +P L + LP LT L
Sbjct: 48 LATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVL 105
Query: 188 ELEVNDANTLPRGGL 202
++ N +LP G L
Sbjct: 106 DVSFNRLTSLPLGAL 120
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 108 SSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167
+ +G+LTNL L L LKD+ ++ L L L L + I L G LT+L L L
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLG 269
Query: 168 HCSNLQVIPLNKHLPNLTSLELEVN 192
+ PL L LT+LEL N
Sbjct: 270 ANQISNISPL-AGLTALTNLELNEN 293
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 113 LTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNL 172
LTNL +L + + D+ + L L+ L L+G+ + + + LT L LDL +
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQIS 252
Query: 173 QVIPLNKHLPNLTSLELEVND-ANTLPRGGL 202
+ PL L LT L+L N +N P GL
Sbjct: 253 NLAPL-SGLTKLTELKLGANQISNISPLAGL 282
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 108 SSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167
+ +G+LTNL L L LKD+ ++ L L L L + I L G LT+L L L
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLG 269
Query: 168 HCSNLQVIPLNKHLPNLTSLELEVN 192
+ PL L LT+LEL N
Sbjct: 270 ANQISNISPL-AGLTALTNLELNEN 293
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 113 LTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNL 172
LTNL +L + + D+ + L L+ L L+G+ + + + LT L LDL +
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQIS 252
Query: 173 QVIPLNKHLPNLTSLELEVND-ANTLPRGGL 202
+ PL L LT L+L N +N P GL
Sbjct: 253 NLAPL-SGLTKLTELKLGANQISNISPLAGL 282
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 100 DMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLT 159
D N L S+ L NL L + + LK + ++ L KLE+L LHG+ I G LT
Sbjct: 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEI----TNTGGLT 169
Query: 160 QLRSLD 165
+L+ ++
Sbjct: 170 RLKKVN 175
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 32/153 (20%)
Query: 75 RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISD 134
+K+ A+ QN L S+ Q+ + + +D+ + I L N+ L L L D++ + +
Sbjct: 28 KKSVTDAVTQNELNSIDQI-IANNSDIKSVQ---GIQYLPNVRYLALGGNKLHDISALKE 83
Query: 135 LKKLEILCLHGSSIYQLPVEV-------------------------GQLTQLRSLDLRHC 169
L L L L G+ + LP V +LT L L L H
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYH- 142
Query: 170 SNLQVIP--LNKHLPNLTSLELEVNDANTLPRG 200
+ LQ +P + L NLT L+L+ N +LP G
Sbjct: 143 NQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 129 MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSL 187
+A + +L L L + +L V+ G L L +LDL H + LQ +P L + LP LT L
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVL 105
Query: 188 ELEVNDANTLPRGGL 202
++ N +LP G L
Sbjct: 106 DVSFNRLTSLPLGAL 120
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 129 MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSL 187
+A + +L L L + +L V+ G L L +LDL H + LQ +P L + LP LT L
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVL 105
Query: 188 ELEVNDANTLPRGGL 202
++ N +LP G L
Sbjct: 106 DVSFNRLTSLPLGAL 120
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 129 MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSL 187
+A + +L L L + +L V+ G L L +LDL H + LQ +P L + LP LT L
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVL 105
Query: 188 ELEVNDANTLPRGGL 202
++ N +LP G L
Sbjct: 106 DVSFNRLTSLPLGAL 120
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 129 MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSL 187
+A + +L L L + +L V+ G L L +LDL H + LQ +P L + LP LT L
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVL 105
Query: 188 ELEVNDANTLPRGGL 202
++ N +LP G L
Sbjct: 106 DVSFNRLTSLPLGAL 120
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 129 MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSL 187
+A + +L L L + +L V+ G L L +LDL H + LQ +P L + LP LT L
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVL 105
Query: 188 ELEVNDANTLPRGGL 202
++ N +LP G L
Sbjct: 106 DVSFNRLTSLPLGAL 120
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 129 MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSL 187
+A + +L L L + +L V+ G L L +LDL H + LQ +P L + LP LT L
Sbjct: 49 LATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVL 106
Query: 188 ELEVNDANTLPRGGL 202
++ N +LP G L
Sbjct: 107 DVSFNRLTSLPLGAL 121
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 129 MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP-LNKHLPNLTSL 187
+A + +L L L + +L V+ G L L +LDL H + LQ +P L + LP LT L
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVL 105
Query: 188 ELEVNDANTLPRGGL 202
++ N +LP G L
Sbjct: 106 DVSFNRLTSLPLGAL 120
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 35/141 (24%)
Query: 75 RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYS------C---- 124
+K+ F + + R +V+ LDLT +L LPS I + +L L L + C
Sbjct: 261 QKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINA 320
Query: 125 ----ILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRH-------CSNLQ 173
L+D+ + +++KL++ G+ + +L L+ LDL H C NLQ
Sbjct: 321 ASFPSLRDLYIKGNMRKLDL----GTRCLE------KLENLQKLDLSHSDIEASDCCNLQ 370
Query: 174 VIPLNKHLPNLTSLELEVNDA 194
+ K+L +L L L N+
Sbjct: 371 L----KNLRHLQYLNLSYNEP 387
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 75 RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVIS- 133
+++ F I + Q++ LDLT +L LPS + L L L L + IS
Sbjct: 259 QEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISA 318
Query: 134 -DLKKLEILCLHGSSIYQLPVEVG---QLTQLRSLDLRH-------CSNLQVIPLNKHLP 182
+ L L + G ++ +L + VG +L L++LDL H C +LQ+ K+L
Sbjct: 319 ANFPSLTHLYIRG-NVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQL----KNLS 373
Query: 183 NLTSLELEVND 193
+L +L L N+
Sbjct: 374 HLQTLNLSHNE 384
>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
pdb|2YPD|B Chain B, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
Length = 392
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Query: 164 LDLRHCSNLQVIPLNKHLPNLTSLELEVNDA-------------NTLPRGGLFLEKPERI 210
L R CS V+ H T+L +EV+D L + G+ L+K E
Sbjct: 157 LGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNGILSKAGI-LKKFEEE 215
Query: 211 DLDANVRLKDQDTVQLWG-IEELSLAELLDHIKNFVNKLVK 250
DLD +R + +D+ ++ G + + + +D I+ F+ K+ K
Sbjct: 216 DLDDILRKRLKDSSEIPGALWHIYAGKDVDKIREFLQKISK 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,932,528
Number of Sequences: 62578
Number of extensions: 263625
Number of successful extensions: 620
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 83
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)