Query 039152
Match_columns 259
No_of_seqs 265 out of 2366
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 4.5E-24 9.7E-29 197.9 6.6 232 1-237 440-727 (889)
2 PLN03210 Resistant to P. syrin 99.8 1.1E-20 2.3E-25 182.6 14.0 217 20-237 471-714 (1153)
3 KOG0617 Ras suppressor protein 99.8 4.3E-21 9.4E-26 141.7 -5.1 172 73-248 17-192 (264)
4 PLN00113 leucine-rich repeat r 99.7 1.6E-17 3.5E-22 159.2 11.4 157 81-237 108-294 (968)
5 PLN00113 leucine-rich repeat r 99.7 4.5E-17 9.7E-22 156.2 10.9 156 81-237 155-318 (968)
6 KOG0444 Cytoskeletal regulator 99.7 5.9E-18 1.3E-22 147.1 -1.4 173 80-257 93-294 (1255)
7 KOG0617 Ras suppressor protein 99.6 1.8E-18 3.9E-23 127.9 -5.0 143 80-224 46-192 (264)
8 KOG0444 Cytoskeletal regulator 99.6 3.4E-17 7.3E-22 142.5 -3.6 157 80-237 212-372 (1255)
9 KOG4194 Membrane glycoprotein 99.6 3.1E-16 6.6E-21 135.4 1.7 141 115-259 270-421 (873)
10 KOG4194 Membrane glycoprotein 99.5 1.2E-15 2.5E-20 131.8 2.0 175 80-258 186-369 (873)
11 PLN03210 Resistant to P. syrin 99.5 8.5E-14 1.8E-18 135.1 11.6 112 80-193 602-715 (1153)
12 KOG0472 Leucine-rich repeat pr 99.5 2.6E-16 5.7E-21 130.3 -7.5 165 80-248 104-294 (565)
13 KOG0472 Leucine-rich repeat pr 99.5 1.1E-15 2.4E-20 126.6 -5.6 158 88-248 65-247 (565)
14 KOG0618 Serine/threonine phosp 99.3 4.6E-14 9.9E-19 127.6 -2.8 156 80-237 254-462 (1081)
15 PF14580 LRR_9: Leucine-rich r 99.3 1.2E-12 2.5E-17 99.8 3.6 123 89-213 17-148 (175)
16 PRK15370 E3 ubiquitin-protein 99.3 8.9E-12 1.9E-16 114.9 9.8 152 81-247 213-385 (754)
17 PRK15370 E3 ubiquitin-protein 99.3 1.7E-11 3.6E-16 113.1 8.4 154 80-247 191-364 (754)
18 KOG0532 Leucine-rich repeat (L 99.2 2E-13 4.4E-18 117.8 -4.8 154 81-237 112-270 (722)
19 PF14580 LRR_9: Leucine-rich r 99.2 5.6E-12 1.2E-16 96.1 2.9 135 100-237 6-150 (175)
20 KOG4237 Extracellular matrix p 99.2 6.5E-13 1.4E-17 110.1 -2.5 89 80-168 80-173 (498)
21 KOG0618 Serine/threonine phosp 99.2 4.4E-13 9.4E-18 121.4 -4.0 163 89-257 239-433 (1081)
22 PRK15387 E3 ubiquitin-protein 99.2 7.9E-11 1.7E-15 108.4 8.8 59 182-247 382-440 (788)
23 KOG0532 Leucine-rich repeat (L 99.2 4.3E-13 9.3E-18 115.8 -6.4 168 80-253 88-258 (722)
24 PRK15387 E3 ubiquitin-protein 99.1 2.2E-10 4.7E-15 105.6 9.2 105 80-199 214-319 (788)
25 KOG4658 Apoptotic ATPase [Sign 99.1 7.5E-11 1.6E-15 110.5 3.9 131 81-213 537-676 (889)
26 cd00116 LRR_RI Leucine-rich re 99.1 1.1E-10 2.5E-15 98.2 4.6 129 87-215 77-231 (319)
27 KOG4237 Extracellular matrix p 99.0 1.1E-11 2.4E-16 102.9 -2.9 92 75-169 54-150 (498)
28 cd00116 LRR_RI Leucine-rich re 99.0 1.5E-10 3.2E-15 97.5 3.6 155 82-237 43-231 (319)
29 COG4886 Leucine-rich repeat (L 99.0 2.4E-10 5.3E-15 99.2 3.7 146 92-237 141-287 (394)
30 KOG1259 Nischarin, modulator o 99.0 3.5E-11 7.6E-16 97.0 -1.4 128 91-219 284-413 (490)
31 COG4886 Leucine-rich repeat (L 99.0 2.2E-10 4.8E-15 99.5 3.2 155 89-246 114-272 (394)
32 KOG3207 Beta-tubulin folding c 99.0 8.9E-11 1.9E-15 98.7 0.4 158 86-245 141-317 (505)
33 KOG1259 Nischarin, modulator o 99.0 2.1E-10 4.5E-15 92.6 1.8 122 134-258 282-403 (490)
34 PLN03150 hypothetical protein; 98.9 5.5E-09 1.2E-13 95.6 9.8 101 93-193 420-526 (623)
35 KOG3207 Beta-tubulin folding c 98.8 7E-10 1.5E-14 93.4 -1.5 177 80-259 111-306 (505)
36 PF13855 LRR_8: Leucine rich r 98.8 9.2E-09 2E-13 64.7 3.8 56 92-147 2-60 (61)
37 PLN03150 hypothetical protein; 98.7 2.8E-08 6E-13 91.0 7.8 104 116-219 420-529 (623)
38 PF13855 LRR_8: Leucine rich r 98.6 3E-08 6.4E-13 62.3 3.7 57 114-170 1-60 (61)
39 KOG2120 SCF ubiquitin ligase, 98.6 1.7E-09 3.6E-14 87.2 -2.8 145 93-237 187-373 (419)
40 KOG0531 Protein phosphatase 1, 98.5 8.9E-09 1.9E-13 90.0 -1.3 107 88-196 92-200 (414)
41 KOG1859 Leucine-rich repeat pr 98.5 2.7E-09 5.8E-14 95.3 -5.8 150 83-237 102-289 (1096)
42 KOG1909 Ran GTPase-activating 98.4 1.3E-07 2.8E-12 77.9 2.0 147 88-237 89-280 (382)
43 PF12799 LRR_4: Leucine Rich r 98.4 1E-06 2.2E-11 51.2 4.7 37 115-151 2-39 (44)
44 KOG1859 Leucine-rich repeat pr 98.3 1.9E-08 4.2E-13 89.9 -4.0 130 107-237 102-264 (1096)
45 KOG0531 Protein phosphatase 1, 98.3 4.1E-08 8.9E-13 85.9 -2.0 129 89-219 70-200 (414)
46 PF12799 LRR_4: Leucine Rich r 98.3 9.4E-07 2E-11 51.3 4.1 41 91-131 1-41 (44)
47 KOG3665 ZYG-1-like serine/thre 98.3 2.4E-07 5.2E-12 85.2 2.3 77 91-168 122-204 (699)
48 KOG3665 ZYG-1-like serine/thre 98.3 8.1E-07 1.8E-11 81.8 4.1 112 83-195 140-263 (699)
49 KOG1909 Ran GTPase-activating 98.2 8.6E-07 1.9E-11 73.1 2.5 170 86-259 53-275 (382)
50 KOG1644 U2-associated snRNP A' 98.1 5.4E-06 1.2E-10 63.6 5.3 59 92-151 43-103 (233)
51 PRK15386 type III secretion pr 98.1 1.2E-05 2.5E-10 69.1 7.8 78 89-177 50-132 (426)
52 PRK15386 type III secretion pr 98.1 1.6E-05 3.6E-10 68.2 8.8 109 90-215 71-187 (426)
53 KOG2120 SCF ubiquitin ligase, 98.1 7.1E-08 1.5E-12 78.0 -5.5 80 115-194 186-272 (419)
54 KOG2982 Uncharacterized conser 98.0 9.4E-07 2E-11 71.7 -0.1 83 88-170 68-157 (418)
55 KOG4579 Leucine-rich repeat (L 98.0 4.1E-07 8.9E-12 65.5 -2.2 77 92-168 54-132 (177)
56 KOG4579 Leucine-rich repeat (L 97.8 3.5E-06 7.7E-11 60.8 0.0 107 93-200 29-141 (177)
57 KOG1644 U2-associated snRNP A' 97.8 4.2E-05 9.1E-10 58.8 5.5 121 94-215 22-150 (233)
58 KOG2123 Uncharacterized conser 97.8 1.1E-06 2.4E-11 70.6 -3.7 100 88-188 16-123 (388)
59 COG5238 RNA1 Ran GTPase-activa 97.7 5.4E-05 1.2E-09 60.9 4.8 79 90-168 29-129 (388)
60 COG5238 RNA1 Ran GTPase-activa 97.5 8E-05 1.7E-09 60.0 2.9 215 11-237 17-282 (388)
61 KOG2739 Leucine-rich acidic nu 97.5 3.4E-05 7.4E-10 61.5 0.6 58 112-169 63-126 (260)
62 KOG2982 Uncharacterized conser 97.3 6.4E-05 1.4E-09 61.3 0.1 104 90-194 44-158 (418)
63 PF13306 LRR_5: Leucine rich r 97.2 0.0017 3.7E-08 46.8 6.7 105 81-191 2-112 (129)
64 KOG2739 Leucine-rich acidic nu 97.1 0.00025 5.4E-09 56.7 2.0 61 89-149 63-129 (260)
65 KOG2123 Uncharacterized conser 96.9 4E-05 8.8E-10 61.8 -4.2 80 112-193 17-99 (388)
66 PF00560 LRR_1: Leucine Rich R 96.8 0.00054 1.2E-08 33.2 1.0 21 137-157 1-21 (22)
67 PF13306 LRR_5: Leucine rich r 96.4 0.018 3.8E-07 41.4 6.9 56 110-167 8-66 (129)
68 PF00560 LRR_1: Leucine Rich R 96.3 0.0017 3.6E-08 31.4 0.6 21 183-203 1-21 (22)
69 PF13504 LRR_7: Leucine rich r 95.8 0.0069 1.5E-07 27.2 1.6 16 137-152 2-17 (17)
70 KOG4341 F-box protein containi 95.7 0.00039 8.5E-09 59.1 -4.9 59 179-237 317-382 (483)
71 PF13504 LRR_7: Leucine rich r 95.5 0.0094 2E-07 26.8 1.3 17 182-198 1-17 (17)
72 KOG1947 Leucine rich repeat pr 95.1 0.0045 9.7E-08 55.0 -0.6 108 87-194 184-307 (482)
73 smart00369 LRR_TYP Leucine-ric 94.5 0.035 7.5E-07 27.8 2.0 21 135-155 1-21 (26)
74 smart00370 LRR Leucine-rich re 94.5 0.035 7.5E-07 27.8 2.0 21 135-155 1-21 (26)
75 KOG4341 F-box protein containi 94.2 0.028 6.2E-07 48.2 2.0 78 179-257 369-455 (483)
76 KOG1947 Leucine rich repeat pr 94.0 0.014 3.1E-07 51.7 -0.1 103 135-237 187-305 (482)
77 smart00369 LRR_TYP Leucine-ric 93.8 0.039 8.5E-07 27.6 1.4 22 181-202 1-22 (26)
78 smart00370 LRR Leucine-rich re 93.8 0.039 8.5E-07 27.6 1.4 22 181-202 1-22 (26)
79 KOG0473 Leucine-rich repeat pr 93.4 0.0021 4.6E-08 50.9 -5.7 80 89-168 40-120 (326)
80 KOG0473 Leucine-rich repeat pr 93.1 0.0019 4.1E-08 51.1 -6.3 86 109-195 37-124 (326)
81 KOG3864 Uncharacterized conser 88.5 0.03 6.6E-07 43.4 -3.5 31 116-146 103-135 (221)
82 KOG3864 Uncharacterized conser 87.1 0.085 1.8E-06 41.0 -1.8 77 92-168 102-185 (221)
83 smart00364 LRR_BAC Leucine-ric 84.3 0.61 1.3E-05 23.4 1.1 19 182-200 2-20 (26)
84 PF13516 LRR_6: Leucine Rich r 81.9 0.49 1.1E-05 22.9 0.2 14 136-149 2-15 (24)
85 smart00365 LRR_SD22 Leucine-ri 80.0 1.5 3.3E-05 21.9 1.6 17 135-151 1-17 (26)
86 KOG4308 LRR-containing protein 80.0 0.021 4.5E-07 50.9 -9.0 152 86-237 110-300 (478)
87 smart00368 LRR_RI Leucine rich 69.1 3.6 7.9E-05 20.8 1.4 14 115-128 3-16 (28)
88 smart00367 LRR_CC Leucine-rich 69.0 3.4 7.5E-05 20.4 1.3 14 159-172 2-15 (26)
89 KOG4308 LRR-containing protein 60.6 0.36 7.9E-06 43.1 -5.6 37 182-218 262-303 (478)
90 KOG3763 mRNA export factor TAP 60.4 5 0.00011 36.2 1.5 76 112-188 216-307 (585)
91 KOG3763 mRNA export factor TAP 46.1 15 0.00033 33.3 2.1 77 89-165 216-307 (585)
92 PF13076 DUF3940: Protein of u 31.2 58 0.0013 18.0 2.2 28 18-45 4-34 (38)
93 PF14947 HTH_45: Winged helix- 30.2 1.5E+02 0.0033 18.9 4.5 37 14-50 33-69 (77)
94 smart00419 HTH_CRP helix_turn_ 30.1 83 0.0018 17.4 3.0 27 14-40 22-48 (48)
95 PF14162 YozD: YozD-like prote 29.1 51 0.0011 19.5 1.8 37 14-50 11-47 (57)
96 PF13545 HTH_Crp_2: Crp-like h 25.4 90 0.0019 19.5 2.8 29 14-42 42-70 (76)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.89 E-value=4.5e-24 Score=197.88 Aligned_cols=232 Identities=24% Similarity=0.322 Sum_probs=143.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHhcCccccCC-----CcEEccHHHHHHHHHHhh-----cccceEEec---CCCccc
Q 039152 1 LGLFQGIKNIKEARARVHTLVNKLKAFCMLLDDD-----ENIFMHDVACDVAISITS-----REQNMFTAT---DELVSG 67 (259)
Q Consensus 1 eG~i~~~~~~e~~~~~~~~~i~~L~~~~l~~~~~-----~~~~mHdli~dl~~~~~~-----~e~~~~~~~---~~~~~~ 67 (259)
||||++.+..+.+++.|++||++|+.++|++..+ .+|+|||+|||||.++|+ +|+..+... ...+..
T Consensus 440 EGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~ 519 (889)
T KOG4658|consen 440 EGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQV 519 (889)
T ss_pred ccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccc
Confidence 8999997777889999999999999999999875 599999999999999999 676333222 013344
Q ss_pred cccCccC-------------------ccccc---------ccccHHHHhCCCCccEEEcCCC-CCCCCchhhcCCCCCcE
Q 039152 68 WEWSDEG-------------------RKNSF---------FAIPQNLLRSMLQVRVLDLTDM-NLLSLPSSIGLLTNLHT 118 (259)
Q Consensus 68 ~~~~~~~-------------------~lr~l---------~~l~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~ 118 (259)
..|...+ +++++ ..++.++|..++.|++||+++| .+.++|..|+.+.+|||
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 5565544 23333 3455666677777777777765 34467777777777777
Q ss_pred EEecCCCCCC-chhhhCCCCCcEEEecCCCCc-ccchhhccCCcCCEEecCCCCCceeeCCC-------CCCCCCcEEEe
Q 039152 119 LCLYSCILKD-MAVISDLKKLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQVIPLN-------KHLPNLTSLEL 189 (259)
Q Consensus 119 L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-------~~l~~L~~L~l 189 (259)
|+++++.+.. |.+++.+..|.+|++..+.-. .+|.....+++|++|.+.... .... .++.+|+.+..
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~----~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA----LSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc----cccchhhHHhhhcccchhhhee
Confidence 7777777777 677777777777777766433 334444557777777765522 1111 34444444444
Q ss_pred eccCCCccCCCCcCCCCCCeEEee----cccccCC-cccccccccceeecccc
Q 039152 190 EVNDANTLPRGGLFLEKPERIDLD----ANVRLKD-QDTVQLWGIEELSLAEL 237 (259)
Q Consensus 190 ~~~~~~~~p~~~~~l~~L~~L~l~----~~~~~~~-~~~~~l~~L~~L~l~~~ 237 (259)
..... .+-..+..++.|..+... ++..... .....+++|+.|.+.+|
T Consensus 676 ~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 676 TISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDC 727 (889)
T ss_pred ecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcC
Confidence 32222 111111233333322221 2211111 22333999999999998
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.1e-20 Score=182.58 Aligned_cols=217 Identities=21% Similarity=0.249 Sum_probs=129.6
Q ss_pred HHHHHHhcCccccCCCcEEccHHHHHHHHHHhhcccc------eEEecCCCccc-cccCccCccccc---------cccc
Q 039152 20 LVNKLKAFCMLLDDDENIFMHDVACDVAISITSREQN------MFTATDELVSG-WEWSDEGRKNSF---------FAIP 83 (259)
Q Consensus 20 ~i~~L~~~~l~~~~~~~~~mHdli~dl~~~~~~~e~~------~~~~~~~~~~~-~~~~~~~~lr~l---------~~l~ 83 (259)
.++.|+++|||+..+++++|||++||||+++++++.. +......+... ..-....+++.+ ..+.
T Consensus 471 ~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~ 550 (1153)
T PLN03210 471 GLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH 550 (1153)
T ss_pred ChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence 4888999999999989999999999999999986631 11100000000 000011122211 2355
Q ss_pred HHHHhCCCCccEEEcCCCCC------C-CCchhhcCCC-CCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchh
Q 039152 84 QNLLRSMLQVRVLDLTDMNL------L-SLPSSIGLLT-NLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVE 154 (259)
Q Consensus 84 ~~~~~~l~~L~~L~l~~~~~------~-~lp~~i~~l~-~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~ 154 (259)
...|.+|++|+.|.+..+.. . .+|..+..++ +|++|.+.++.+.. |..+ ...+|+.|++.++.+..+|.+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc
Confidence 56677777777777754421 1 3455554443 46777776666666 4433 456666777766666666666
Q ss_pred hccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccC-CCccCCCCcCCCCCCeEEeecccccCC-ccccccccccee
Q 039152 155 VGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVND-ANTLPRGGLFLEKPERIDLDANVRLKD-QDTVQLWGIEEL 232 (259)
Q Consensus 155 i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L 232 (259)
+..+++|+.|++++|+.+..+|....+++|+.|++++|. +..+|..++.+++|+.|++.+|..... |..+.+++|+.|
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L 709 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRL 709 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEE
Confidence 666666777777666666666655666666666666654 456666666666666666666643333 333345555555
Q ss_pred ecccc
Q 039152 233 SLAEL 237 (259)
Q Consensus 233 ~l~~~ 237 (259)
++++|
T Consensus 710 ~Lsgc 714 (1153)
T PLN03210 710 NLSGC 714 (1153)
T ss_pred eCCCC
Confidence 55555
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=4.3e-21 Score=141.71 Aligned_cols=172 Identities=26% Similarity=0.290 Sum_probs=144.7
Q ss_pred cCcccccccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCccc
Q 039152 73 EGRKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQL 151 (259)
Q Consensus 73 ~~~lr~l~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l 151 (259)
.+.+.++..+|.- | ++++++.|-++.|.++.+|..|..+.+|++|++.+|++.+ |.+++++++|+.|++..|++..+
T Consensus 17 DrgiSsf~~~~gL-f-~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l 94 (264)
T KOG0617|consen 17 DRGISSFEELPGL-F-NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL 94 (264)
T ss_pred ccccccHhhcccc-c-chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC
Confidence 4456667777764 3 7889999999999999999999999999999999999999 89999999999999999999999
Q ss_pred chhhccCCcCCEEecCCCCCce-eeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccc-ccc
Q 039152 152 PVEVGQLTQLRSLDLRHCSNLQ-VIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWG 228 (259)
Q Consensus 152 p~~i~~l~~L~~L~l~~~~~~~-~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~ 228 (259)
|.+++.++.|+.|++.+|+... .+|.. -.++.|+.|+++.|.+..+|..++.+++|+.|.++.|.-.+.|..++ +..
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~ 174 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTR 174 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHH
Confidence 9999999999999999866544 45543 55677888888999998899888999999999999887777777777 888
Q ss_pred cceeeccccchhhhhhhhhh
Q 039152 229 IEELSLAELLDHIKNFVNKL 248 (259)
Q Consensus 229 L~~L~l~~~~~~~~~~~~~l 248 (259)
|++|.+.++ .+.-+|+++
T Consensus 175 lrelhiqgn--rl~vlppel 192 (264)
T KOG0617|consen 175 LRELHIQGN--RLTVLPPEL 192 (264)
T ss_pred HHHHhcccc--eeeecChhh
Confidence 888898888 667777654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=1.6e-17 Score=159.21 Aligned_cols=157 Identities=25% Similarity=0.345 Sum_probs=82.4
Q ss_pred cccHHHHhCCCCccEEEcCCCCCC-----------------------CCchhhcCCCCCcEEEecCCCCCC--chhhhCC
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLL-----------------------SLPSSIGLLTNLHTLCLYSCILKD--MAVISDL 135 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~-----------------------~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l 135 (259)
.+|.++|..+++|++|++++|.+. .+|..++.+++|++|++++|.+.. |..++.+
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhC
Confidence 567666666666666666666543 234445555555555555555443 4455555
Q ss_pred CCCcEEEecCCCCc-ccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC-ccCCCCcCCCCCCeEEe
Q 039152 136 KKLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN-TLPRGGLFLEKPERIDL 212 (259)
Q Consensus 136 ~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l 212 (259)
++|++|++++|.+. .+|..++++++|++|++++|.....+|.. +++++|++|++++|.++ .+|..++.+++|+.|++
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 55555555555544 44555555555555555554444444433 45555555555555553 45555555555555555
Q ss_pred eccccc-CCccccc-ccccceeecccc
Q 039152 213 DANVRL-KDQDTVQ-LWGIEELSLAEL 237 (259)
Q Consensus 213 ~~~~~~-~~~~~~~-l~~L~~L~l~~~ 237 (259)
.+|... ..+..+. +++|+.|++++|
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCC
Confidence 555221 2222222 555555555555
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.71 E-value=4.5e-17 Score=156.20 Aligned_cols=156 Identities=31% Similarity=0.353 Sum_probs=117.0
Q ss_pred cccHHHHhCCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhc
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVG 156 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~ 156 (259)
.+|.. ++++++|++|++++|.+. .+|..++++++|++|++++|.+.. |..++.+++|++|++++|.+. .+|..++
T Consensus 155 ~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 155 EIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred cCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence 45555 578899999999999876 678888899999999999998876 778888899999999888877 7788888
Q ss_pred cCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC-ccCCCCcCCCCCCeEEeeccccc-CCccccc-cccccee
Q 039152 157 QLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN-TLPRGGLFLEKPERIDLDANVRL-KDQDTVQ-LWGIEEL 232 (259)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~-l~~L~~L 232 (259)
++++|++|++++|...+.+|.. +++++|++|++++|.+. .+|..+..+++|+.|++++|... ..+..+. +++|+.|
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 8888888888887665566655 67777777777777763 56666667777777777766332 2233222 6666666
Q ss_pred ecccc
Q 039152 233 SLAEL 237 (259)
Q Consensus 233 ~l~~~ 237 (259)
++.+|
T Consensus 314 ~l~~n 318 (968)
T PLN00113 314 HLFSN 318 (968)
T ss_pred ECCCC
Confidence 66666
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=5.9e-18 Score=147.10 Aligned_cols=173 Identities=21% Similarity=0.307 Sum_probs=135.0
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchhhcc
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVEVGQ 157 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~i~~ 157 (259)
..||+++| .++.|++|+++.|++.++|..+..-+++-+|+|++|.|.. | +-+-+++-|-+|||++|+++.+|+.+..
T Consensus 93 sGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR 171 (1255)
T KOG0444|consen 93 SGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRR 171 (1255)
T ss_pred CCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence 57899998 7999999999999999999999999999999999999988 6 4466788999999999999999999999
Q ss_pred CCcCCEEecCCCCC----ceeeCCC----------------------CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEE
Q 039152 158 LTQLRSLDLRHCSN----LQVIPLN----------------------KHLPNLTSLELEVNDANTLPRGGLFLEKPERID 211 (259)
Q Consensus 158 l~~L~~L~l~~~~~----~~~lp~~----------------------~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~ 211 (259)
+..|++|.+++|.. +..+|.. ..+.||..+|++.|.+..+|..+..+++|+.|+
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheec
Confidence 99999999988642 2233332 456678888888888888888888888899998
Q ss_pred eecccccCCccccc-ccccceeeccccchhhhhhhhhhhhccccccc
Q 039152 212 LDANVRLKDQDTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLK 257 (259)
Q Consensus 212 l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~ 257 (259)
+++|...+...... ..+|+.|+++.+ .+..+|+.++ .++.|+
T Consensus 252 LS~N~iteL~~~~~~W~~lEtLNlSrN--QLt~LP~avc--KL~kL~ 294 (1255)
T KOG0444|consen 252 LSGNKITELNMTEGEWENLETLNLSRN--QLTVLPDAVC--KLTKLT 294 (1255)
T ss_pred cCcCceeeeeccHHHHhhhhhhccccc--hhccchHHHh--hhHHHH
Confidence 88876655544333 666777777776 5556665433 444443
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.8e-18 Score=127.93 Aligned_cols=143 Identities=25% Similarity=0.320 Sum_probs=130.3
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCc--ccchhhc
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIY--QLPVEVG 156 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~--~lp~~i~ 156 (259)
..+|+.+ ..+++|.+|.+.+|+++++|.+++.++.|+.|++..|++.. |..++.++.|++||+..|++. .+|..+.
T Consensus 46 ~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 46 TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchh
Confidence 5677876 68999999999999999999999999999999999999988 999999999999999999876 7899999
Q ss_pred cCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccc
Q 039152 157 QLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTV 224 (259)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~ 224 (259)
-++.|+-|++++ +....+|.. +++++|+.|.+..|.+-++|..++.++.|++|++.+|.-.-.|+.+
T Consensus 125 ~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 125 YMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 999999999999 677888887 9999999999999999999999999999999999998655554443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.59 E-value=3.4e-17 Score=142.47 Aligned_cols=157 Identities=25% Similarity=0.303 Sum_probs=140.4
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL 158 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l 158 (259)
..+|..+ .++.+|+.++++.|.++.+|+.+-++.+|+.|+|++|.+++ -...+...+|++|+++.|++..+|..++++
T Consensus 212 ~N~Ptsl-d~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL 290 (1255)
T KOG0444|consen 212 DNIPTSL-DDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKL 290 (1255)
T ss_pred hcCCCch-hhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhh
Confidence 5677775 68999999999999999999999999999999999999998 466777789999999999999999999999
Q ss_pred CcCCEEecCCCCC-ceeeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccc-ccccceeecc
Q 039152 159 TQLRSLDLRHCSN-LQVIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLA 235 (259)
Q Consensus 159 ~~L~~L~l~~~~~-~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~ 235 (259)
++|+.|.+.+|.. ...+|.+ +++.+|+.+...+|.+.-+|.+++.|.+|+.|.+..|.-...|..++ ++.|+.|++.
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeecc
Confidence 9999999987543 2356666 99999999999999999999999999999999999998888888888 9999999999
Q ss_pred cc
Q 039152 236 EL 237 (259)
Q Consensus 236 ~~ 237 (259)
++
T Consensus 371 eN 372 (1255)
T KOG0444|consen 371 EN 372 (1255)
T ss_pred CC
Confidence 88
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.59 E-value=3.1e-16 Score=135.37 Aligned_cols=141 Identities=23% Similarity=0.261 Sum_probs=76.6
Q ss_pred CCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEe
Q 039152 115 NLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLEL 189 (259)
Q Consensus 115 ~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l 189 (259)
++++|+|..|+++. -..+.+++.|+.|+++.|.|..+ ++++.-.++|+.|+++. +.+.+++.+ ..+..|+.|++
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcc
Confidence 33344444444333 23334444444444444444433 22333344444444444 334444443 33444444444
Q ss_pred eccCCCccCCC-CcCCCCCCeEEeecc---cccCCcccc--cccccceeeccccchhhhhhhhhhhhcccccccCC
Q 039152 190 EVNDANTLPRG-GLFLEKPERIDLDAN---VRLKDQDTV--QLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL 259 (259)
Q Consensus 190 ~~~~~~~~p~~-~~~l~~L~~L~l~~~---~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~L 259 (259)
+.|.+..+.++ +.++++|+.|+++.| +..++.... ++++|+.|++.++ .++.|+... +.|++.|++|
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN--qlk~I~krA-fsgl~~LE~L 421 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN--QLKSIPKRA-FSGLEALEHL 421 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc--eeeecchhh-hccCccccee
Confidence 44444444333 336778888888877 334442222 2888899999888 888888776 7888888876
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.55 E-value=1.2e-15 Score=131.81 Aligned_cols=175 Identities=23% Similarity=0.258 Sum_probs=117.3
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-V 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i 155 (259)
..+-.+.|.++.+|.+|.++.|.++.+|. .|.++++|+.|+|..|.+.. ...+.++++|+.|.+..|.|..+.++ +
T Consensus 186 t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 186 TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence 34555667777788888888888887776 35558888888888887665 45666777777777777777777665 6
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCccccc--ccccc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQDTVQ--LWGIE 230 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~--l~~L~ 230 (259)
..+.++++|++.. +.++.+..+ .+++.|+.|++++|.+..+ ++.+...++|+.|+++.|.....++.-. +..|+
T Consensus 266 y~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 266 YGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeecccceeeccc-chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 6777777777777 344444444 6777777777777777543 4444567777777777775554433222 77777
Q ss_pred eeeccccchhhhhhhhhhhhcccccccC
Q 039152 231 ELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 231 ~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
.|+|+++ .++.+-+.. +.++.+|+.
T Consensus 345 ~LnLs~N--si~~l~e~a-f~~lssL~~ 369 (873)
T KOG4194|consen 345 ELNLSHN--SIDHLAEGA-FVGLSSLHK 369 (873)
T ss_pred hhccccc--chHHHHhhH-HHHhhhhhh
Confidence 7777777 666665543 555555543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.51 E-value=8.5e-14 Score=135.10 Aligned_cols=112 Identities=28% Similarity=0.400 Sum_probs=85.8
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCC-CCCchhhhCCCCCcEEEecCC-CCcccchhhcc
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCI-LKDMAVISDLKKLEILCLHGS-SIYQLPVEVGQ 157 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~-~i~~lp~~i~~ 157 (259)
..+|..+ .+++|+.|++.++.+..+|..+..+++|++|+++++. +...+.++.+++|++|++++| .+..+|..+++
T Consensus 602 ~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 602 RCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred CCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhc
Confidence 3455543 4678888888888888888888888899999998776 444566888889999999887 46688888889
Q ss_pred CCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccC
Q 039152 158 LTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVND 193 (259)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~ 193 (259)
+++|+.|++++|+.+..+|...++++|+.|++++|.
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 999999999988888888876556666666665553
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.48 E-value=2.6e-16 Score=130.32 Aligned_cols=165 Identities=27% Similarity=0.342 Sum_probs=92.9
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL 158 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l 158 (259)
.++|+++ .+...++.++.+.|.+..+|++++.+..|..++..+|.++. |++++.+.+|..+++.+|.+.++|+..-++
T Consensus 104 s~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m 182 (565)
T KOG0472|consen 104 SELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAM 182 (565)
T ss_pred hhccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHH
Confidence 3455554 34555666666666666666666666666666666666555 555555555555555555555555554445
Q ss_pred CcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccC----------------------CCCc-CCCCCCeEEeec
Q 039152 159 TQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLP----------------------RGGL-FLEKPERIDLDA 214 (259)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p----------------------~~~~-~l~~L~~L~l~~ 214 (259)
+.|++++... +.++.+|.. +.+.+|..|++..|.+..+| ..++ .++++..|+++.
T Consensus 183 ~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 183 KRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred HHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc
Confidence 5555555555 455555555 55555555555555555555 3333 455555666655
Q ss_pred ccccCCccc-ccccccceeeccccchhhhhhhhhh
Q 039152 215 NVRLKDQDT-VQLWGIEELSLAELLDHIKNFVNKL 248 (259)
Q Consensus 215 ~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~l 248 (259)
|...+.|.. +.+++|++|+++++ .+..+|..+
T Consensus 262 Nklke~Pde~clLrsL~rLDlSNN--~is~Lp~sL 294 (565)
T KOG0472|consen 262 NKLKEVPDEICLLRSLERLDLSNN--DISSLPYSL 294 (565)
T ss_pred cccccCchHHHHhhhhhhhcccCC--ccccCCccc
Confidence 544444333 23666666666666 566666544
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.45 E-value=1.1e-15 Score=126.62 Aligned_cols=158 Identities=25% Similarity=0.268 Sum_probs=102.5
Q ss_pred hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152 88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL 166 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 166 (259)
.++..+++|.+..|++..+|++++.+..+..++.+.|.+.. |+.++.+.+|..++++.|.+.++|++++.+..+..++.
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 45666666666666666666666666666666666666655 55666666666666666655555555555555555555
Q ss_pred CCCCCceeeCCC------------------------CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcc
Q 039152 167 RHCSNLQVIPLN------------------------KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQD 222 (259)
Q Consensus 167 ~~~~~~~~lp~~------------------------~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~ 222 (259)
.+ +.+.++|.. .+++.|++++...|.++.+|..++.+.+|..|++..|.....|.
T Consensus 145 ~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe 223 (565)
T KOG0472|consen 145 TN-NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE 223 (565)
T ss_pred cc-cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC
Confidence 54 344444443 45788999999999999999999999999999999886555554
Q ss_pred cccccccceeeccccchhhhhhhhhh
Q 039152 223 TVQLWGIEELSLAELLDHIKNFVNKL 248 (259)
Q Consensus 223 ~~~l~~L~~L~l~~~~~~~~~~~~~l 248 (259)
+-++..|.+|+++.+ .++.+|+++
T Consensus 224 f~gcs~L~Elh~g~N--~i~~lpae~ 247 (565)
T KOG0472|consen 224 FPGCSLLKELHVGEN--QIEMLPAEH 247 (565)
T ss_pred CCccHHHHHHHhccc--HHHhhHHHH
Confidence 333555555555555 444444443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=4.6e-14 Score=127.59 Aligned_cols=156 Identities=24% Similarity=0.292 Sum_probs=92.3
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccc------
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLP------ 152 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp------ 152 (259)
..+| .|...+.+|+.+....|.+..+|..+.....|++|.+..|.+.. |+...++++|++|++..|.+..+|
T Consensus 254 ~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v 332 (1081)
T KOG0618|consen 254 SNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAV 332 (1081)
T ss_pred hcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhh
Confidence 4556 44566777777777777666666666656666666666665555 555555666666666655555444
Q ss_pred --------------------------------------------hhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcE
Q 039152 153 --------------------------------------------VEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTS 186 (259)
Q Consensus 153 --------------------------------------------~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~ 186 (259)
+.+.++.+|+.|++++ +.++.+|.. .++..|+.
T Consensus 333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEE 411 (1081)
T ss_pred hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHH
Confidence 2334555666666665 455555555 55556666
Q ss_pred EEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152 187 LELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL 237 (259)
Q Consensus 187 L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (259)
|++++|.++.+|..+..++.|++|...+|.....|....++.|+.+|++.+
T Consensus 412 L~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 412 LNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN 462 (1081)
T ss_pred HhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccc
Confidence 666666666666555555555555555554444454444666666666666
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.31 E-value=1.2e-12 Score=99.80 Aligned_cols=123 Identities=21% Similarity=0.261 Sum_probs=42.3
Q ss_pred CCCCccEEEcCCCCCCCCchhhc-CCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhc-cCCcCCEEec
Q 039152 89 SMLQVRVLDLTDMNLLSLPSSIG-LLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVG-QLTQLRSLDL 166 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~l 166 (259)
+...++.|++.+|.++.+.. ++ .+.+|+.|++++|.++..+.+..+++|++|++++|+|+.+++.+. .+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 44567888888888876643 44 467888888888888876677778888888888888887766553 5778888888
Q ss_pred CCCCCceeeCCC---CCCCCCcEEEeeccCCCccCCC----CcCCCCCCeEEee
Q 039152 167 RHCSNLQVIPLN---KHLPNLTSLELEVNDANTLPRG----GLFLEKPERIDLD 213 (259)
Q Consensus 167 ~~~~~~~~lp~~---~~l~~L~~L~l~~~~~~~~p~~----~~~l~~L~~L~l~ 213 (259)
++ +.+..+... ..+++|+.|++.+|+++.-+.. +..+++|+.|+-.
T Consensus 96 ~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 77 344433332 5566666666666666543331 3355555555544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=8.9e-12 Score=114.88 Aligned_cols=152 Identities=20% Similarity=0.282 Sum_probs=82.3
Q ss_pred cccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCC
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLT 159 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~ 159 (259)
.+|..++ ++|+.|++++|.++.+|..+. .+|+.|++++|.+.. |..+. .+|++|++++|++..+|..+. .
T Consensus 213 sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~ 283 (754)
T PRK15370 213 SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--E 283 (754)
T ss_pred cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--C
Confidence 4555443 356666666666666665443 356666666666555 43332 356666666666666655443 3
Q ss_pred cCCEEecCCCCCceeeCCC--------------------CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccC
Q 039152 160 QLRSLDLRHCSNLQVIPLN--------------------KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLK 219 (259)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~~--------------------~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 219 (259)
+|+.|++++| .+..+|.. .-.++|+.|++++|.++.+|..+. ++|+.|++++|....
T Consensus 284 sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 284 ELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITV 360 (754)
T ss_pred CCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCCc
Confidence 5666666653 33333321 122456666666666666665432 567777777663333
Q ss_pred Ccccccccccceeeccccchhhhhhhhh
Q 039152 220 DQDTVQLWGIEELSLAELLDHIKNFVNK 247 (259)
Q Consensus 220 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 247 (259)
.|..+ .++|+.|++++| .+..+|..
T Consensus 361 LP~~l-p~~L~~LdLs~N--~Lt~LP~~ 385 (754)
T PRK15370 361 LPETL-PPTITTLDVSRN--ALTNLPEN 385 (754)
T ss_pred CChhh-cCCcCEEECCCC--cCCCCCHh
Confidence 22222 356677777766 55555543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.25 E-value=1.7e-11 Score=113.07 Aligned_cols=154 Identities=23% Similarity=0.251 Sum_probs=105.9
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL 158 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l 158 (259)
..+|..+ .+.++.|++++|.++.+|..+. .+|++|++++|.++. |..+. .+|+.|++++|.+..+|..+.
T Consensus 191 tsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~-- 261 (754)
T PRK15370 191 TTIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP-- 261 (754)
T ss_pred CcCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--
Confidence 4556544 3578999999999998888664 589999999999888 55443 479999999999999988765
Q ss_pred CcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcC-------------------CCCCCeEEeecccccC
Q 039152 159 TQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLF-------------------LEKPERIDLDANVRLK 219 (259)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~-------------------l~~L~~L~l~~~~~~~ 219 (259)
.+|+.|++++ +.+..+|.. -.++|+.|++++|.++.+|..+.. .++|+.|++.+|....
T Consensus 262 s~L~~L~Ls~-N~L~~LP~~-l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 262 SALQSLDLFH-NKISCLPEN-LPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS 339 (754)
T ss_pred CCCCEEECcC-CccCccccc-cCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc
Confidence 4799999997 456677763 335899999999988877764321 1234444444442222
Q ss_pred Ccccccccccceeeccccchhhhhhhhh
Q 039152 220 DQDTVQLWGIEELSLAELLDHIKNFVNK 247 (259)
Q Consensus 220 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 247 (259)
.+..+ .++|+.|++++| .+..+|..
T Consensus 340 LP~~l-~~sL~~L~Ls~N--~L~~LP~~ 364 (754)
T PRK15370 340 LPASL-PPELQVLDVSKN--QITVLPET 364 (754)
T ss_pred CChhh-cCcccEEECCCC--CCCcCChh
Confidence 22111 356777777777 45555543
No 18
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=2e-13 Score=117.78 Aligned_cols=154 Identities=24% Similarity=0.294 Sum_probs=102.9
Q ss_pred cccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCC
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLT 159 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~ 159 (259)
.+|..+ .++..|++++++.|.++.+|..++.|+ |++|.+++|+++. |..++.+.+|..||.+.|.+..+|..++.+.
T Consensus 112 ~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~ 189 (722)
T KOG0532|consen 112 TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT 189 (722)
T ss_pred ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence 455554 467777777777777777777666553 7777777777777 6777766777777777777777777777777
Q ss_pred cCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccc----ccccceeecc
Q 039152 160 QLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ----LWGIEELSLA 235 (259)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~----l~~L~~L~l~ 235 (259)
+|+.|++.. +.+..+|..-..-.|..||+++|++..+|..+..|+.|++|.+.+|.-...|..+- ..=.++|+.+
T Consensus 190 slr~l~vrR-n~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 190 SLRDLNVRR-NHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred HHHHHHHhh-hhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence 777777777 44555665422334677777777777777777777777777777776555554443 2223445554
Q ss_pred cc
Q 039152 236 EL 237 (259)
Q Consensus 236 ~~ 237 (259)
-|
T Consensus 269 A~ 270 (722)
T KOG0532|consen 269 AC 270 (722)
T ss_pred hc
Confidence 44
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=5.6e-12 Score=96.07 Aligned_cols=135 Identities=24% Similarity=0.292 Sum_probs=51.4
Q ss_pred CCCCCCCchhhcCCCCCcEEEecCCCCCCchhhh-CCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC
Q 039152 100 DMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVIS-DLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN 178 (259)
Q Consensus 100 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 178 (259)
.+.+...|. +.+..+++.|++.+|.++....++ .+.+|+.|++++|.|+.++ ++..++.|++|++++ +.+..++..
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~ 82 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEG 82 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHH
T ss_pred ccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccc
Confidence 334445554 456668899999999999877777 5889999999999999885 688899999999998 556666532
Q ss_pred --CCCCCCcEEEeeccCCCccCC--CCcCCCCCCeEEeecccccCCcc----ccc-ccccceeecccc
Q 039152 179 --KHLPNLTSLELEVNDANTLPR--GGLFLEKPERIDLDANVRLKDQD----TVQ-LWGIEELSLAEL 237 (259)
Q Consensus 179 --~~l~~L~~L~l~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~~~----~~~-l~~L~~L~l~~~ 237 (259)
..+++|+.|++++|.+..+-. .+..+++|+.|++.+|.....+. .+. +++|+.||-...
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 368999999999999865533 34589999999999996665532 222 999999987655
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=6.5e-13 Score=110.11 Aligned_cols=89 Identities=26% Similarity=0.391 Sum_probs=65.8
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecC-CCCCC-c-hhhhCCCCCcEEEecCCCCcccch-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYS-CILKD-M-AVISDLKKLEILCLHGSSIYQLPV-E 154 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~-~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~ 154 (259)
..||++.|+.+++||.|+++.|.|+.+ |+.|.++..|..|-+.+ |.|++ | ..++++..|+-|.+.-|++..++. .
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 678999999999999999999999864 77888888877766655 78887 4 557777777777776666664433 3
Q ss_pred hccCCcCCEEecCC
Q 039152 155 VGQLTQLRSLDLRH 168 (259)
Q Consensus 155 i~~l~~L~~L~l~~ 168 (259)
+..++++..|.+.+
T Consensus 160 l~dL~~l~lLslyD 173 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYD 173 (498)
T ss_pred HHHhhhcchhcccc
Confidence 55666665555555
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.21 E-value=4.4e-13 Score=121.37 Aligned_cols=163 Identities=25% Similarity=0.274 Sum_probs=127.6
Q ss_pred CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152 89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 167 (259)
-..++.+++++.+.+..+|++++.+.+|..++...|.+.. |..+...++|++|.+..|.++.+|+....++.|++|++.
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 4568899999999999999999999999999999999987 888999999999999999999999988889999999999
Q ss_pred CCCCceeeCCC---------------------------CCCCCCcEEEeeccCCC--ccCCCCcCCCCCCeEEeeccccc
Q 039152 168 HCSNLQVIPLN---------------------------KHLPNLTSLELEVNDAN--TLPRGGLFLEKPERIDLDANVRL 218 (259)
Q Consensus 168 ~~~~~~~lp~~---------------------------~~l~~L~~L~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~ 218 (259)
. +.+..+|.. ..++.|+.|.+.+|.++ .+|. +.++..|+.|++++|...
T Consensus 319 ~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 319 S-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred h-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccc
Confidence 8 556667664 33455666777777774 4443 367788888888888555
Q ss_pred CCccccc--ccccceeeccccchhhhhhhhhhhhccccccc
Q 039152 219 KDQDTVQ--LWGIEELSLAELLDHIKNFVNKLVKVGSSQLK 257 (259)
Q Consensus 219 ~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~ 257 (259)
..|.... +..||.|+|+++ .++.+|..+. .+++|+
T Consensus 397 ~fpas~~~kle~LeeL~LSGN--kL~~Lp~tva--~~~~L~ 433 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGN--KLTTLPDTVA--NLGRLH 433 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccc--hhhhhhHHHH--hhhhhH
Confidence 5544333 888888888888 7778876543 444444
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.18 E-value=7.9e-11 Score=108.44 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=29.4
Q ss_pred CCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhhh
Q 039152 182 PNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNK 247 (259)
Q Consensus 182 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 247 (259)
.+|+.|++++|.++.+|.. .++|+.|++++|.....|. ...+|+.|++++| .+..+|..
T Consensus 382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~--l~~~L~~L~Ls~N--qLt~LP~s 440 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM--LPSGLLSLSVYRN--QLTRLPES 440 (788)
T ss_pred cccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc--chhhhhhhhhccC--cccccChH
Confidence 3455666666666555543 2455566666553322221 1234555555555 44555543
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=4.3e-13 Score=115.80 Aligned_cols=168 Identities=23% Similarity=0.297 Sum_probs=143.8
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL 158 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l 158 (259)
..+|..+ ..+-.|..+.+..|.+..+|..++.+..|.||+++.|+++. |..++.|+ |+.|-+++|++..+|+.++.+
T Consensus 88 ~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 88 SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLL 165 (722)
T ss_pred ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccc
Confidence 5666664 45667888888889898899999999999999999999998 88888777 899999999999999999988
Q ss_pred CcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccc-ccccceeeccc
Q 039152 159 TQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAE 236 (259)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~ 236 (259)
..|.+|+.+. +.+..+|.. +.+.+|+.|.+..|.+..+|..+..+ .|.+|++++|.....|..+. ++.|++|.|.+
T Consensus 166 ~tl~~ld~s~-nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 166 PTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred hhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeecc
Confidence 9999999997 556677766 89999999999999999999997744 58899999998888777666 99999999999
Q ss_pred cchhhhhhhhhhhhccc
Q 039152 237 LLDHIKNFVNKLVKVGS 253 (259)
Q Consensus 237 ~~~~~~~~~~~l~~~~l 253 (259)
| .+++.|.+++..|.
T Consensus 244 N--PLqSPPAqIC~kGk 258 (722)
T KOG0532|consen 244 N--PLQSPPAQICEKGK 258 (722)
T ss_pred C--CCCCChHHHHhccc
Confidence 9 99999998875553
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.13 E-value=2.2e-10 Score=105.55 Aligned_cols=105 Identities=26% Similarity=0.314 Sum_probs=62.6
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL 158 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l 158 (259)
..+|+.+. ++|+.|++.+|.++.+|.. +++|++|++++|.++. |.. .++|+.|++++|.+..+|...
T Consensus 214 tsLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp--- 281 (788)
T PRK15387 214 TTLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP--- 281 (788)
T ss_pred CcCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---
Confidence 45666543 3677777777777777752 4677788888877776 321 246666666666666555422
Q ss_pred CcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCC
Q 039152 159 TQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPR 199 (259)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~ 199 (259)
.+|+.|++++| .+..+|. .+++|+.|++++|.++.+|.
T Consensus 282 ~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 282 SGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQLASLPA 319 (788)
T ss_pred hhcCEEECcCC-ccccccc--cccccceeECCCCccccCCC
Confidence 34555666553 3444543 34556666666666655554
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=7.5e-11 Score=110.47 Aligned_cols=131 Identities=27% Similarity=0.275 Sum_probs=101.1
Q ss_pred cccHHHHhCCCCccEEEcCCCC--CCCCch-hhcCCCCCcEEEecCCC-CCC-chhhhCCCCCcEEEecCCCCcccchhh
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMN--LLSLPS-SIGLLTNLHTLCLYSCI-LKD-MAVISDLKKLEILCLHGSSIYQLPVEV 155 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~--~~~lp~-~i~~l~~L~~L~l~~~~-~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i 155 (259)
.++... ..+.|++|-+.+|. +..++. .|..++.|++||+++|. +.. |.+++.+.+||||+++++.+..+|.++
T Consensus 537 ~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l 614 (889)
T KOG4658|consen 537 HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL 614 (889)
T ss_pred hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH
Confidence 444442 56689999999986 566655 47789999999999876 555 899999999999999999999999999
Q ss_pred ccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC---ccCCCCcCCCCCCeEEee
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN---TLPRGGLFLEKPERIDLD 213 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~---~~p~~~~~l~~L~~L~l~ 213 (259)
+++..|.+|++..+..+..+|.. ..+++|++|.+...... ..-..+..+..|+.+.+.
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99999999999987777777665 56999999999877632 122223344555555543
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=1.1e-10 Score=98.17 Aligned_cols=129 Identities=26% Similarity=0.208 Sum_probs=67.3
Q ss_pred HhCCCCccEEEcCCCCCC-CCchhhcCCCC---CcEEEecCCCCCC------chhhhCC-CCCcEEEecCCCCc-----c
Q 039152 87 LRSMLQVRVLDLTDMNLL-SLPSSIGLLTN---LHTLCLYSCILKD------MAVISDL-KKLEILCLHGSSIY-----Q 150 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~---L~~L~l~~~~~~~------~~~~~~l-~~L~~L~l~~~~i~-----~ 150 (259)
|..+++|+.|++++|.+. ..+..+..+.+ |++|++++|.+.. ...+..+ ++|+.|++++|.+. .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 345666666666666665 23333333333 6666666666553 1334455 66666666666555 2
Q ss_pred cchhhccCCcCCEEecCCCCCcee----eCCC-CCCCCCcEEEeeccCCC-----ccCCCCcCCCCCCeEEeecc
Q 039152 151 LPVEVGQLTQLRSLDLRHCSNLQV----IPLN-KHLPNLTSLELEVNDAN-----TLPRGGLFLEKPERIDLDAN 215 (259)
Q Consensus 151 lp~~i~~l~~L~~L~l~~~~~~~~----lp~~-~~l~~L~~L~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~ 215 (259)
++..+..+++|++|++++|+.... ++.. ..+++|+.|++++|.++ .++..+..+++|+.|++++|
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 333445555666666666433211 1100 23346666666666553 22333345566666666665
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.04 E-value=1.1e-11 Score=102.92 Aligned_cols=92 Identities=26% Similarity=0.313 Sum_probs=77.3
Q ss_pred cccccccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecC-CCCcc
Q 039152 75 RKNSFFAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHG-SSIYQ 150 (259)
Q Consensus 75 ~lr~l~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~-~~i~~ 150 (259)
+-+.+.++|..+ .+.-..+.|..|.|+.+|+ .|+.+++||.|+|+.|.|+. |..+.++..|..|-+.+ |+|+.
T Consensus 54 r~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 54 RGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 444566777754 4567789999999999887 68999999999999999998 88999999988887777 89999
Q ss_pred cchh-hccCCcCCEEecCCC
Q 039152 151 LPVE-VGQLTQLRSLDLRHC 169 (259)
Q Consensus 151 lp~~-i~~l~~L~~L~l~~~ 169 (259)
+|.+ ++.+..++.|.+.-|
T Consensus 131 l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred hhhhHhhhHHHHHHHhcChh
Confidence 9987 889999998877653
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=1.5e-10 Score=97.47 Aligned_cols=155 Identities=22% Similarity=0.171 Sum_probs=110.8
Q ss_pred ccHHHHhCCCCccEEEcCCCCCCC-------CchhhcCCCCCcEEEecCCCCCC--chhhhCCCC---CcEEEecCCCCc
Q 039152 82 IPQNLLRSMLQVRVLDLTDMNLLS-------LPSSIGLLTNLHTLCLYSCILKD--MAVISDLKK---LEILCLHGSSIY 149 (259)
Q Consensus 82 l~~~~~~~l~~L~~L~l~~~~~~~-------lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~---L~~L~l~~~~i~ 149 (259)
++.. +...+.++.++++++.+.. ++..+..+++|++|++++|.+.. +..+..+.+ |++|++++|++.
T Consensus 43 i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 43 LASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 3443 3567789999999887662 34456778899999999999875 455555555 999999999876
Q ss_pred -----ccchhhccC-CcCCEEecCCCCCceeeCC----C-CCCCCCcEEEeeccCCC-----ccCCCCcCCCCCCeEEee
Q 039152 150 -----QLPVEVGQL-TQLRSLDLRHCSNLQVIPL----N-KHLPNLTSLELEVNDAN-----TLPRGGLFLEKPERIDLD 213 (259)
Q Consensus 150 -----~lp~~i~~l-~~L~~L~l~~~~~~~~lp~----~-~~l~~L~~L~l~~~~~~-----~~p~~~~~l~~L~~L~l~ 213 (259)
.+...+..+ ++|+.|++++|........ . ..+++|++|++++|.++ .++..+..+++|+.|+++
T Consensus 122 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 201 (319)
T cd00116 122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201 (319)
T ss_pred hHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEecc
Confidence 334456677 8999999999765421111 1 56678999999999886 244444566799999999
Q ss_pred cccccCC-c----ccc-cccccceeecccc
Q 039152 214 ANVRLKD-Q----DTV-QLWGIEELSLAEL 237 (259)
Q Consensus 214 ~~~~~~~-~----~~~-~l~~L~~L~l~~~ 237 (259)
+|..... . ..+ .+++|+.|++++|
T Consensus 202 ~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 202 NNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred CCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 8843322 1 112 2788999999988
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=2.4e-10 Score=99.23 Aligned_cols=146 Identities=34% Similarity=0.390 Sum_probs=84.4
Q ss_pred CccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCC
Q 039152 92 QVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCS 170 (259)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~ 170 (259)
+|+.|++++|.+..+|..+..+++|+.|++++|.+.. +...+.+++|+.|++++|.+..+|..+.....|+.+.+++|.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 5555555555555554445555555555555555555 333335555555555555555555544444445555555532
Q ss_pred CceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152 171 NLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL 237 (259)
Q Consensus 171 ~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (259)
.........++.++..+.+.+|.+..+|..++.+++++.|++++|.....+....+.+|+.|+++++
T Consensus 221 ~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 221 IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccccccccCccCEEeccCc
Confidence 2222222256666666666666666666666777777777777776666655444777777777776
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=3.5e-11 Score=96.95 Aligned_cols=128 Identities=20% Similarity=0.234 Sum_probs=106.0
Q ss_pred CCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCC
Q 039152 91 LQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCS 170 (259)
Q Consensus 91 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~ 170 (259)
+.|+.+|+++|.++.+..++.-.+.+|.|++++|.+.....+..+++|+.||+++|.+.++...-.++.+.++|+++. +
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-N 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-h
Confidence 468889999999998888888888999999999998886668889999999999998887766666788889999998 5
Q ss_pred CceeeCCCCCCCCCcEEEeeccCCCcc--CCCCcCCCCCCeEEeecccccC
Q 039152 171 NLQVIPLNKHLPNLTSLELEVNDANTL--PRGGLFLEKPERIDLDANVRLK 219 (259)
Q Consensus 171 ~~~~lp~~~~l~~L~~L~l~~~~~~~~--p~~~~~l~~L~~L~l~~~~~~~ 219 (259)
.+..+...+++.+|..||+++|++..+ -..|++++.|+++.+.+|....
T Consensus 363 ~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 363 KIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 667776668889999999999998644 3457899999999998884433
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=2.2e-10 Score=99.52 Aligned_cols=155 Identities=25% Similarity=0.343 Sum_probs=130.2
Q ss_pred CCCCccEEEcCCCCCCCCchhhcCCC-CCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152 89 SMLQVRVLDLTDMNLLSLPSSIGLLT-NLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL 166 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 166 (259)
.++.++.|++.++.+..+|.....+. +|+.|++++|.+.. +..++.+++|+.|+++.|++..+|...+..+.|+.|++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 56789999999999999999888885 99999999999998 57899999999999999999999988878999999999
Q ss_pred CCCCCceeeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccc-ccccceeeccccchhhhhh
Q 039152 167 RHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAELLDHIKNF 244 (259)
Q Consensus 167 ~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~ 244 (259)
++ +.+..+|.. .....|+.+.+++|.....+..+..+.++..+.+.++.....+..+. +.+++.|+++++ .+..+
T Consensus 194 s~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n--~i~~i 270 (394)
T COG4886 194 SG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN--QISSI 270 (394)
T ss_pred cC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc--ccccc
Confidence 98 677888875 46666999999999776677777888888888877775555444444 888999999999 77777
Q ss_pred hh
Q 039152 245 VN 246 (259)
Q Consensus 245 ~~ 246 (259)
+.
T Consensus 271 ~~ 272 (394)
T COG4886 271 SS 272 (394)
T ss_pred cc
Confidence 65
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=8.9e-11 Score=98.72 Aligned_cols=158 Identities=20% Similarity=0.167 Sum_probs=103.3
Q ss_pred HHhCCCCccEEEcCCCCCCC---CchhhcCCCCCcEEEecCCCCCCc---hhhhCCCCCcEEEecCCCCc--ccchhhcc
Q 039152 86 LLRSMLQVRVLDLTDMNLLS---LPSSIGLLTNLHTLCLYSCILKDM---AVISDLKKLEILCLHGSSIY--QLPVEVGQ 157 (259)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~--~lp~~i~~ 157 (259)
....+++++.|+++.|-+.. +-.-...+++|+.|+++.|.+..+ ..-..+.+|+.|.++.|++. .+-.-...
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 34567888888888876653 233345678888888888887662 22335678888888888776 33333556
Q ss_pred CCcCCEEecCCCCCceeeC-CCCCCCCCcEEEeeccCCCccC--CCCcCCCCCCeEEeecccccCC--ccc------ccc
Q 039152 158 LTQLRSLDLRHCSNLQVIP-LNKHLPNLTSLELEVNDANTLP--RGGLFLEKPERIDLDANVRLKD--QDT------VQL 226 (259)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp-~~~~l~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~--~~~------~~l 226 (259)
+++|..|++..|....... ....+..|+.|+|++|++-.++ ..++.++.|..|+++.+...+. +.. ..+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 7788888887763222111 1166778888888888876666 3356788888888887733332 222 228
Q ss_pred cccceeeccccchhhhhhh
Q 039152 227 WGIEELSLAELLDHIKNFV 245 (259)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~ 245 (259)
++|++|++..+ .+.+.+
T Consensus 301 ~kL~~L~i~~N--~I~~w~ 317 (505)
T KOG3207|consen 301 PKLEYLNISEN--NIRDWR 317 (505)
T ss_pred ccceeeecccC--cccccc
Confidence 88888888888 554443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=2.1e-10 Score=92.58 Aligned_cols=122 Identities=21% Similarity=0.156 Sum_probs=92.9
Q ss_pred CCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEee
Q 039152 134 DLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLD 213 (259)
Q Consensus 134 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~ 213 (259)
....|.++|+++|.|+.+.++..-++.++.|++++| .+..+.....+++|+.||+++|.++++..|-..+.++++|.++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 345688999999999999888888999999999984 4555555578899999999999998887776688899999999
Q ss_pred cccccCCcccccccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152 214 ANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
+|..-.....-.+-+|++|+++++ .++++-+--..+.+|.|++
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N--~Ie~ldeV~~IG~LPCLE~ 403 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSN--QIEELDEVNHIGNLPCLET 403 (490)
T ss_pred hhhHhhhhhhHhhhhheecccccc--chhhHHHhcccccccHHHH
Confidence 885544333333778888888888 6666654333456666654
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.93 E-value=5.5e-09 Score=95.62 Aligned_cols=101 Identities=27% Similarity=0.363 Sum_probs=55.5
Q ss_pred ccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhccCCcCCEEecCC
Q 039152 93 VRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRH 168 (259)
Q Consensus 93 L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~ 168 (259)
++.|++++|.+. .+|..++.+++|++|++++|.+.+ |+.++.+++|++|++++|++. .+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 445555555555 455555566666666666665554 445555666666666666555 4555556666666666665
Q ss_pred CCCceeeCCC--CCCCCCcEEEeeccC
Q 039152 169 CSNLQVIPLN--KHLPNLTSLELEVND 193 (259)
Q Consensus 169 ~~~~~~lp~~--~~l~~L~~L~l~~~~ 193 (259)
|...+.+|.. ....++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 5544455543 122344455555554
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=7e-10 Score=93.43 Aligned_cols=177 Identities=20% Similarity=0.231 Sum_probs=125.9
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCch--hhcCCCCCcEEEecCCCCCC----chhhhCCCCCcEEEecCCCCcccch
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS--SIGLLTNLHTLCLYSCILKD----MAVISDLKKLEILCLHGSSIYQLPV 153 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~i~~lp~ 153 (259)
.++...- ++++.|+.+.+.++.+...+. ....|++++.|+++.|-+.. ..-...+++|+.|+++.|++.....
T Consensus 111 Dki~akQ-sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 111 DKIAAKQ-SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred HHHHHHh-hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence 3444443 588999999999998886663 56789999999999999887 2556689999999999998763322
Q ss_pred h--hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccC-CCccCCCCcCCCCCCeEEeecccccCCc---cccc
Q 039152 154 E--VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVND-ANTLPRGGLFLEKPERIDLDANVRLKDQ---DTVQ 225 (259)
Q Consensus 154 ~--i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~~---~~~~ 225 (259)
+ -..+.+|+.|.++.|+....--.. ..+|+|+.|++.+|. +..-.....-+..|++|++++|.....+ ....
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc
Confidence 2 236788999999999765321111 788999999999994 3322222245778999999998554443 3334
Q ss_pred ccccceeeccccchhhhhh--hhh--hh-hcccccccCC
Q 039152 226 LWGIEELSLAELLDHIKNF--VNK--LV-KVGSSQLKYL 259 (259)
Q Consensus 226 l~~L~~L~l~~~~~~~~~~--~~~--l~-~~~l~~L~~L 259 (259)
++.|+.|+++.+ ++.++ |+. .+ ...|++|++|
T Consensus 270 l~~L~~Lnls~t--gi~si~~~d~~s~~kt~~f~kL~~L 306 (505)
T KOG3207|consen 270 LPGLNQLNLSST--GIASIAEPDVESLDKTHTFPKLEYL 306 (505)
T ss_pred ccchhhhhcccc--CcchhcCCCccchhhhcccccceee
Confidence 999999999999 66555 221 00 1356777664
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=9.2e-09 Score=64.67 Aligned_cols=56 Identities=32% Similarity=0.402 Sum_probs=30.6
Q ss_pred CccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCC
Q 039152 92 QVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSS 147 (259)
Q Consensus 92 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~ 147 (259)
+|++|++++|.+..+|. .+..+++|++|++++|.++. +..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45556666665555543 44555555555555555555 3345555555555555554
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.74 E-value=2.8e-08 Score=91.05 Aligned_cols=104 Identities=28% Similarity=0.292 Sum_probs=85.3
Q ss_pred CcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeec
Q 039152 116 LHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEV 191 (259)
Q Consensus 116 L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~ 191 (259)
++.|+|++|.+.+ |..++.+++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|.. +++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 6788899998887 788999999999999999887 78888999999999999998777777776 8889999999999
Q ss_pred cCCC-ccCCCCcCC-CCCCeEEeecccccC
Q 039152 192 NDAN-TLPRGGLFL-EKPERIDLDANVRLK 219 (259)
Q Consensus 192 ~~~~-~~p~~~~~l-~~L~~L~l~~~~~~~ 219 (259)
|.++ .+|..++.+ .++..+++.+|....
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 9884 888876643 466778877774433
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.65 E-value=3e-08 Score=62.32 Aligned_cols=57 Identities=32% Similarity=0.419 Sum_probs=41.5
Q ss_pred CCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccch-hhccCCcCCEEecCCCC
Q 039152 114 TNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPV-EVGQLTQLRSLDLRHCS 170 (259)
Q Consensus 114 ~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~ 170 (259)
++|++|++++|.++. + ..+..+++|++|++++|.++.+|+ .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 367778888887777 3 566777888888888877777765 36777778887777753
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.7e-09 Score=87.23 Aligned_cols=145 Identities=17% Similarity=0.171 Sum_probs=82.0
Q ss_pred ccEEEcCCCCCC--CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCC-CCcccc--hhhccCCcCCEEe
Q 039152 93 VRVLDLTDMNLL--SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGS-SIYQLP--VEVGQLTQLRSLD 165 (259)
Q Consensus 93 L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~-~i~~lp--~~i~~l~~L~~L~ 165 (259)
|+++|++...++ .+-.-++.|.+|+-|.+.++++.+ ...+.+-.+|+.++++++ ++++-. --+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 445555555444 233334445555555555555554 234444455555555544 233111 1133445555555
Q ss_pred cCCCCCceeeCC------------------------C------CCCCCCcEEEeeccC-CC-ccCCCCcCCCCCCeEEee
Q 039152 166 LRHCSNLQVIPL------------------------N------KHLPNLTSLELEVND-AN-TLPRGGLFLEKPERIDLD 213 (259)
Q Consensus 166 l~~~~~~~~lp~------------------------~------~~l~~L~~L~l~~~~-~~-~~p~~~~~l~~L~~L~l~ 213 (259)
+++|........ . .++++|..||++.|. ++ .+...+..++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 555433322111 0 678888999998875 33 333445688889999999
Q ss_pred cccccCCccccc---ccccceeecccc
Q 039152 214 ANVRLKDQDTVQ---LWGIEELSLAEL 237 (259)
Q Consensus 214 ~~~~~~~~~~~~---l~~L~~L~l~~~ 237 (259)
.|........+. .++|.+|++-+|
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEeccc
Confidence 987777655554 788888988877
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=8.9e-09 Score=90.02 Aligned_cols=107 Identities=25% Similarity=0.282 Sum_probs=72.7
Q ss_pred hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152 88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 167 (259)
..+++|..+++.+|.+..+...+..+.+|++|++++|.|.....+..++.|+.|++.+|.|..+. ++..++.|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 45677777788877777666656677778888888887777666777777778888887777553 34557777777777
Q ss_pred CCCCceeeCC--CCCCCCCcEEEeeccCCCc
Q 039152 168 HCSNLQVIPL--NKHLPNLTSLELEVNDANT 196 (259)
Q Consensus 168 ~~~~~~~lp~--~~~l~~L~~L~l~~~~~~~ 196 (259)
+| .+..+.. ...+.+++.+.+.+|.+..
T Consensus 171 ~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 171 YN-RIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred cc-hhhhhhhhhhhhccchHHHhccCCchhc
Confidence 74 3344443 2466666666666666543
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=2.7e-09 Score=95.26 Aligned_cols=150 Identities=25% Similarity=0.248 Sum_probs=102.3
Q ss_pred cHHHHhCCCCccEEEcCCCCCCCCch------hh--------------------cCC------CCCcEEEecCCCCCC-c
Q 039152 83 PQNLLRSMLQVRVLDLTDMNLLSLPS------SI--------------------GLL------TNLHTLCLYSCILKD-M 129 (259)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~~~~~~lp~------~i--------------------~~l------~~L~~L~l~~~~~~~-~ 129 (259)
|-++| .++.||+|.+.++.+...-. .+ +.. ..|.+.+.++|.+.. -
T Consensus 102 pi~if-pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD 180 (1096)
T KOG1859|consen 102 PISIF-PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD 180 (1096)
T ss_pred Cceec-cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence 44555 68899999999887653111 01 110 113344555555555 3
Q ss_pred hhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCC
Q 039152 130 AVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKP 207 (259)
Q Consensus 130 ~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L 207 (259)
.++.-++.|+.|||++|++.... .+..+++|++|+++. +.+..+|.. ..+. |+.|.+++|.++.+ .++.++.+|
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL 256 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSL 256 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhh
Confidence 56666778888899888887664 678888899999988 667777765 3333 88888888888776 345788889
Q ss_pred CeEEeecccccCC---cccccccccceeecccc
Q 039152 208 ERIDLDANVRLKD---QDTVQLWGIEELSLAEL 237 (259)
Q Consensus 208 ~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~~ 237 (259)
+.|+++.|....- ...+.+..|..|.|.+|
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 9999988854444 23334888888888887
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=1.3e-07 Score=77.88 Aligned_cols=147 Identities=20% Similarity=0.202 Sum_probs=107.0
Q ss_pred hCCCCccEEEcCCCCCC-C----CchhhcCCCCCcEEEecCCCCCC--ch-------------hhhCCCCCcEEEecCCC
Q 039152 88 RSMLQVRVLDLTDMNLL-S----LPSSIGLLTNLHTLCLYSCILKD--MA-------------VISDLKKLEILCLHGSS 147 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~-~----lp~~i~~l~~L~~L~l~~~~~~~--~~-------------~~~~l~~L~~L~l~~~~ 147 (259)
-+.+.|++|+|++|.|. . +-+-+..+..|+.|.+.+|.+.. -. ..+.-++|+++...+|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 36679999999999887 2 22346678899999999998764 11 23445789999999998
Q ss_pred Cc-----ccchhhccCCcCCEEecCCCCCceeeCCC--------CCCCCCcEEEeeccCCC-----ccCCCCcCCCCCCe
Q 039152 148 IY-----QLPVEVGQLTQLRSLDLRHCSNLQVIPLN--------KHLPNLTSLELEVNDAN-----TLPRGGLFLEKPER 209 (259)
Q Consensus 148 i~-----~lp~~i~~l~~L~~L~l~~~~~~~~lp~~--------~~l~~L~~L~l~~~~~~-----~~p~~~~~l~~L~~ 209 (259)
+. .+...+...+.|+.+.+..|+ ..|.+ .++++|+.||+..|.++ .+...+..|+.|+.
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~---I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNG---IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEeccc---ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 76 334456777888888888753 23333 78899999999999875 44555667889999
Q ss_pred EEeecc-cccCCccccc------ccccceeecccc
Q 039152 210 IDLDAN-VRLKDQDTVQ------LWGIEELSLAEL 237 (259)
Q Consensus 210 L~l~~~-~~~~~~~~~~------l~~L~~L~l~~~ 237 (259)
+++..| ....+...+. .++|+.|.+.+|
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 999988 4444432222 778888888888
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=1e-06 Score=51.16 Aligned_cols=37 Identities=32% Similarity=0.395 Sum_probs=17.6
Q ss_pred CCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCccc
Q 039152 115 NLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQL 151 (259)
Q Consensus 115 ~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l 151 (259)
+|++|++++|.+++ ++.++.+++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555555 33355555555555555554433
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=1.9e-08 Score=89.93 Aligned_cols=130 Identities=22% Similarity=0.243 Sum_probs=96.9
Q ss_pred chhhcCCCCCcEEEecCCCCCCchhhhC---------------------------------CCCCcEEEecCCCCcccch
Q 039152 107 PSSIGLLTNLHTLCLYSCILKDMAVISD---------------------------------LKKLEILCLHGSSIYQLPV 153 (259)
Q Consensus 107 p~~i~~l~~L~~L~l~~~~~~~~~~~~~---------------------------------l~~L~~L~l~~~~i~~lp~ 153 (259)
|-.|..+..||+|.+.++.+.....+.. .-.|.+.+++.|.+..+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 5568889999999999987643111110 1136677778888887878
Q ss_pred hhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceee
Q 039152 154 EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELS 233 (259)
Q Consensus 154 ~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 233 (259)
++.-++.+++|++++|+ +........++.|++||+++|.++.+|..-..-..|+.|.+++|.-...-..-.+++|+.|+
T Consensus 182 SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LD 260 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLD 260 (1096)
T ss_pred HHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccc
Confidence 88889999999999954 44444447889999999999999999876332234999999998555544444599999999
Q ss_pred cccc
Q 039152 234 LAEL 237 (259)
Q Consensus 234 l~~~ 237 (259)
+++|
T Consensus 261 lsyN 264 (1096)
T KOG1859|consen 261 LSYN 264 (1096)
T ss_pred hhHh
Confidence 9988
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.35 E-value=4.1e-08 Score=85.86 Aligned_cols=129 Identities=24% Similarity=0.276 Sum_probs=104.7
Q ss_pred CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchh-hhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152 89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAV-ISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 167 (259)
.+..+..+.+..|.+...-..++.+++|.+|++.+|.+..... +..+++|++|++++|.|+.+. ++..++.|+.|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 4556666668888887755567889999999999999999666 899999999999999999774 47778889999999
Q ss_pred CCCCceeeCCCCCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccC
Q 039152 168 HCSNLQVIPLNKHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLK 219 (259)
Q Consensus 168 ~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~ 219 (259)
+ +.+..+.....+++|+.+++++|.+..++.. ...+.+++.+.+.++....
T Consensus 149 ~-N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 149 G-NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred c-CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 9 5667777667799999999999999877663 3678888888888764333
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.33 E-value=9.4e-07 Score=51.30 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=35.2
Q ss_pred CCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchh
Q 039152 91 LQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAV 131 (259)
Q Consensus 91 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~ 131 (259)
++|++|++++|.++.+|..++++++|++|++++|.+++.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47999999999999999989999999999999999987433
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.32 E-value=2.4e-07 Score=85.18 Aligned_cols=77 Identities=23% Similarity=0.465 Sum_probs=37.6
Q ss_pred CCccEEEcCCCCCC--CCchhhc-CCCCCcEEEecCCCCCC---chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEE
Q 039152 91 LQVRVLDLTDMNLL--SLPSSIG-LLTNLHTLCLYSCILKD---MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSL 164 (259)
Q Consensus 91 ~~L~~L~l~~~~~~--~lp~~i~-~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 164 (259)
.+|+.|++++...- ..|..++ -++.|+.|.+++-.+.. ..-..++++|..||++++++..+ .+++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 34555555554221 2333333 24555555555544433 12333455555555555555555 445555555555
Q ss_pred ecCC
Q 039152 165 DLRH 168 (259)
Q Consensus 165 ~l~~ 168 (259)
.+.+
T Consensus 201 ~mrn 204 (699)
T KOG3665|consen 201 SMRN 204 (699)
T ss_pred hccC
Confidence 5543
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.25 E-value=8.1e-07 Score=81.78 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=82.2
Q ss_pred cHHHHhCCCCccEEEcCCCCCC--CCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccc--hhhccC
Q 039152 83 PQNLLRSMLQVRVLDLTDMNLL--SLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLP--VEVGQL 158 (259)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l 158 (259)
|..+..-+|.|+.|.+.+-.+. ++..-..++++|+.||++++.++...+++.+++|++|.+++-.+..-. ..+.+|
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 3344557889999998887665 334445678889999999999888888899999999988876666322 357789
Q ss_pred CcCCEEecCCCCCceeeCCC--------CCCCCCcEEEeeccCCC
Q 039152 159 TQLRSLDLRHCSNLQVIPLN--------KHLPNLTSLELEVNDAN 195 (259)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~--------~~l~~L~~L~l~~~~~~ 195 (259)
++|++||++.-.. ...+.. ..+|+|+.||.+++.+.
T Consensus 220 ~~L~vLDIS~~~~-~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 220 KKLRVLDISRDKN-NDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cCCCeeecccccc-ccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9999999987322 222211 56889999999887753
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=8.6e-07 Score=73.14 Aligned_cols=170 Identities=22% Similarity=0.261 Sum_probs=111.3
Q ss_pred HHhCCCCccEEEcCCCCCC----CCch-------hhcCCCCCcEEEecCCCCCC--c----hhhhCCCCCcEEEecCCCC
Q 039152 86 LLRSMLQVRVLDLTDMNLL----SLPS-------SIGLLTNLHTLCLYSCILKD--M----AVISDLKKLEILCLHGSSI 148 (259)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~~----~lp~-------~i~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~i 148 (259)
...+.+.|+..++++-... .+|+ .+-.+++|++|+|++|.+.. + .-+.++..|+.|.+.+|++
T Consensus 53 ~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 53 VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 3456778888888764222 3443 33466789999999998765 3 3466788899999999877
Q ss_pred cccc--------------hhhccCCcCCEEecCCCCCceeeCCC------CCCCCCcEEEeeccCCC-----ccCCCCcC
Q 039152 149 YQLP--------------VEVGQLTQLRSLDLRHCSNLQVIPLN------KHLPNLTSLELEVNDAN-----TLPRGGLF 203 (259)
Q Consensus 149 ~~lp--------------~~i~~l~~L~~L~l~~~~~~~~lp~~------~~l~~L~~L~l~~~~~~-----~~p~~~~~ 203 (259)
.... ..+.+-++|+++..++ +.+...+.. ...+.|+.+.+..|.+. .+...+..
T Consensus 133 g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~ 211 (382)
T KOG1909|consen 133 GPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH 211 (382)
T ss_pred ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh
Confidence 5221 2244567788888877 444444443 55688999999988874 22333568
Q ss_pred CCCCCeEEeecc-cccCCccccc-----ccccceeeccccchhhhh-----hhhhhhhcccccccCC
Q 039152 204 LEKPERIDLDAN-VRLKDQDTVQ-----LWGIEELSLAELLDHIKN-----FVNKLVKVGSSQLKYL 259 (259)
Q Consensus 204 l~~L~~L~l~~~-~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~-----~~~~l~~~~l~~L~~L 259 (259)
++.|+.|++..| +...+...+. +++|+.|++++| .+++ +...+ ..+.|.|+.|
T Consensus 212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc--ll~~~Ga~a~~~al-~~~~p~L~vl 275 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC--LLENEGAIAFVDAL-KESAPSLEVL 275 (382)
T ss_pred CCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc--ccccccHHHHHHHH-hccCCCCcee
Confidence 899999999988 4444433222 788999999988 4333 33333 3456666543
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=5.4e-06 Score=63.63 Aligned_cols=59 Identities=34% Similarity=0.411 Sum_probs=27.5
Q ss_pred CccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhC-CCCCcEEEecCCCCccc
Q 039152 92 QVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISD-LKKLEILCLHGSSIYQL 151 (259)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~-l~~L~~L~l~~~~i~~l 151 (259)
..-.+|+++|.+..++. +..++.|.+|.+..|.++. -+.+.. +++|++|.+.+|+|.++
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l 103 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL 103 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh
Confidence 33445555555444333 4445555555555555554 222222 34455555555554433
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.11 E-value=1.2e-05 Score=69.15 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=54.2
Q ss_pred CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCC-CCC-chhhhCCCCCcEEEecCC-CCcccchhhccCCcCCEEe
Q 039152 89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCI-LKD-MAVISDLKKLEILCLHGS-SIYQLPVEVGQLTQLRSLD 165 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-~~~-~~~~~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~ 165 (259)
.+++++.|++++|.++.+|. + ..+|+.|.+++|. ++. |..+ ..+|++|++++| .+..+|.+ |+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence 46889999999999998883 2 3469999998755 444 4434 258999999998 77788765 44444
Q ss_pred cCC--CCCceeeCC
Q 039152 166 LRH--CSNLQVIPL 177 (259)
Q Consensus 166 l~~--~~~~~~lp~ 177 (259)
+.. |..+..+|.
T Consensus 119 L~~n~~~~L~~LPs 132 (426)
T PRK15386 119 IKGSATDSIKNVPN 132 (426)
T ss_pred eCCCCCcccccCcc
Confidence 443 223455554
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.11 E-value=1.6e-05 Score=68.23 Aligned_cols=109 Identities=24% Similarity=0.307 Sum_probs=67.2
Q ss_pred CCCccEEEcCCC-CCCCCchhhcCCCCCcEEEecCC-CCCC-chhhhCCCCCcEEEecCCC---CcccchhhccCCcCCE
Q 039152 90 MLQVRVLDLTDM-NLLSLPSSIGLLTNLHTLCLYSC-ILKD-MAVISDLKKLEILCLHGSS---IYQLPVEVGQLTQLRS 163 (259)
Q Consensus 90 l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~l~~~-~~~~-~~~~~~l~~L~~L~l~~~~---i~~lp~~i~~l~~L~~ 163 (259)
..+|+.|.+.+| .++.+|+.+. .+|++|.+++| .+.. |+ +|+.|++..+. +..+|.++ +.
T Consensus 71 P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~~LPssL------k~ 136 (426)
T PRK15386 71 PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIKNVPNGL------TS 136 (426)
T ss_pred CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEEeCCCCCcccccCcchH------hh
Confidence 346899999875 5567777653 58999999988 4554 43 47777887764 44666654 44
Q ss_pred EecCCCCCce--eeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecc
Q 039152 164 LDLRHCSNLQ--VIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDAN 215 (259)
Q Consensus 164 L~l~~~~~~~--~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~ 215 (259)
|.+.+++... .+|. .-.++|++|++++|....+|..+. .+|+.|.+..+
T Consensus 137 L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 137 LSINSYNPENQARIDN-LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eecccccccccccccc-ccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 5553322111 1110 112578888888877655554422 47778887654
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=7.1e-08 Score=78.03 Aligned_cols=80 Identities=23% Similarity=0.291 Sum_probs=66.0
Q ss_pred CCcEEEecCCCCCC---chhhhCCCCCcEEEecCCCCc-ccchhhccCCcCCEEecCCCCCceeeCCC---CCCCCCcEE
Q 039152 115 NLHTLCLYSCILKD---MAVISDLKKLEILCLHGSSIY-QLPVEVGQLTQLRSLDLRHCSNLQVIPLN---KHLPNLTSL 187 (259)
Q Consensus 115 ~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~---~~l~~L~~L 187 (259)
.|++||++...++. .--++.+.+|+.|.+.+++++ .+...|.+-.+|+.++++.|+.+...... ..++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 48999999988876 355778899999999999887 66667888899999999998876655444 788999999
Q ss_pred EeeccCC
Q 039152 188 ELEVNDA 194 (259)
Q Consensus 188 ~l~~~~~ 194 (259)
++++|.+
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 9998875
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=9.4e-07 Score=71.65 Aligned_cols=83 Identities=27% Similarity=0.355 Sum_probs=60.8
Q ss_pred hCCCCccEEEcCCCCCCC---CchhhcCCCCCcEEEecCCCCCC-chhh-hCCCCCcEEEecCCCCc--ccchhhccCCc
Q 039152 88 RSMLQVRVLDLTDMNLLS---LPSSIGLLTNLHTLCLYSCILKD-MAVI-SDLKKLEILCLHGSSIY--QLPVEVGQLTQ 160 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~-~~~~-~~l~~L~~L~l~~~~i~--~lp~~i~~l~~ 160 (259)
+..+.++.+++.+|.++. +..-+.++++|++|+++.|.+.. +..+ ..+.+|++|-+.++.+. .....+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 356778888898888874 33344578888999999888876 4444 46778888888888665 55555777888
Q ss_pred CCEEecCCCC
Q 039152 161 LRSLDLRHCS 170 (259)
Q Consensus 161 L~~L~l~~~~ 170 (259)
++.|+++.|+
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 8888887753
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.02 E-value=4.1e-07 Score=65.54 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=34.9
Q ss_pred CccEEEcCCCCCCCCchhhc-CCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCC
Q 039152 92 QVRVLDLTDMNLLSLPSSIG-LLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRH 168 (259)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~ 168 (259)
.|+..++++|.+.++|..+. .++..+.|++++|.+.+ |..+..++.|+.|+++.|.+...|.-+..+.++-.|+...
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 44444455554444444332 22344444444444444 4444444444444444444444444444444444444433
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=3.5e-06 Score=60.79 Aligned_cols=107 Identities=22% Similarity=0.265 Sum_probs=58.4
Q ss_pred ccEEEcCCCCCCCCch---hhcCCCCCcEEEecCCCCCC-chhhhC-CCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152 93 VRVLDLTDMNLLSLPS---SIGLLTNLHTLCLYSCILKD-MAVISD-LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167 (259)
Q Consensus 93 L~~L~l~~~~~~~lp~---~i~~l~~L~~L~l~~~~~~~-~~~~~~-l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 167 (259)
+..+++++|.+-.+++ .+....+|...++++|.++. |+.+.. .+...++++++|.+.++|..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 3445555555543333 23444555556666666666 544443 335666666666666666666666666666666
Q ss_pred CCCCceeeCCC-CCCCCCcEEEeeccCCCccCCC
Q 039152 168 HCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRG 200 (259)
Q Consensus 168 ~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~ 200 (259)
.| .+...|.. ..+.+|..|+..+|....+|-.
T Consensus 109 ~N-~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 109 FN-PLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cC-ccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 53 33333333 3455566666665555544443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.82 E-value=4.2e-05 Score=58.83 Aligned_cols=121 Identities=20% Similarity=0.233 Sum_probs=86.0
Q ss_pred cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhcc-CCcCCEEecCCCCCc
Q 039152 94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQ-LTQLRSLDLRHCSNL 172 (259)
Q Consensus 94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~-l~~L~~L~l~~~~~~ 172 (259)
+.+++.+..+..+..-=..+.+...+++++|.+.....+..++.|.+|.+.+|+|..+.+.+.. +++|..|.+.+ +.+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSI 100 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cch
Confidence 4556666555432221112345678889998887777788888999999999999988777664 46699999987 455
Q ss_pred eeeCCC---CCCCCCcEEEeeccCCCccCCC----CcCCCCCCeEEeecc
Q 039152 173 QVIPLN---KHLPNLTSLELEVNDANTLPRG----GLFLEKPERIDLDAN 215 (259)
Q Consensus 173 ~~lp~~---~~l~~L~~L~l~~~~~~~~p~~----~~~l~~L~~L~l~~~ 215 (259)
+.+... ..++.|++|.+-+|+++.-+.. +..+++|+.|+....
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 555443 7888999999999987644432 557889999988854
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=1.1e-06 Score=70.58 Aligned_cols=100 Identities=23% Similarity=0.232 Sum_probs=77.3
Q ss_pred hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccch--hhccCCcCCEEe
Q 039152 88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPV--EVGQLTQLRSLD 165 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~ 165 (259)
+.+.+.+.|++-+|.+..+.- +.+++.|.+|.|+-|.++....+..|++|+.|+|+.|.|..+.+ .+.++++|+.|-
T Consensus 16 sdl~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred hHHHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 346677788888888775443 45688888888888888887778888889999998888876543 477888899998
Q ss_pred cCCCCCceeeCCC------CCCCCCcEEE
Q 039152 166 LRHCSNLQVIPLN------KHLPNLTSLE 188 (259)
Q Consensus 166 l~~~~~~~~lp~~------~~l~~L~~L~ 188 (259)
+..|.+.+.-+.. .-++||++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888777766665 6678888876
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.71 E-value=5.4e-05 Score=60.93 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=38.6
Q ss_pred CCCccEEEcCCCCCC-----CCchhhcCCCCCcEEEecCCCCC---C---------chhhhCCCCCcEEEecCCCCc-cc
Q 039152 90 MLQVRVLDLTDMNLL-----SLPSSIGLLTNLHTLCLYSCILK---D---------MAVISDLKKLEILCLHGSSIY-QL 151 (259)
Q Consensus 90 l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~---~---------~~~~~~l~~L~~L~l~~~~i~-~l 151 (259)
+..++.+++++|.|. .+...|.+-.+|+..++++-... + .+.+-+|++|+..+++.|-+. +.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455666666666554 23334444555555555443211 1 134445556666666655433 22
Q ss_pred ch----hhccCCcCCEEecCC
Q 039152 152 PV----EVGQLTQLRSLDLRH 168 (259)
Q Consensus 152 p~----~i~~l~~L~~L~l~~ 168 (259)
|+ -|.+-+.|.+|.+++
T Consensus 109 ~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred chHHHHHHhcCCCceeEEeec
Confidence 22 244445556665555
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.48 E-value=8e-05 Score=60.00 Aligned_cols=215 Identities=14% Similarity=0.103 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHhcCccccC-CCcEEccHHHHHHHHHHhhcccceEEecCCCccccccCccC--c-ccccccccHHH
Q 039152 11 KEARARVHTLVNKLKAFCMLLDD-DENIFMHDVACDVAISITSREQNMFTATDELVSGWEWSDEG--R-KNSFFAIPQNL 86 (259)
Q Consensus 11 e~~~~~~~~~i~~L~~~~l~~~~-~~~~~mHdli~dl~~~~~~~e~~~~~~~~~~~~~~~~~~~~--~-lr~l~~l~~~~ 86 (259)
++...|+.++.. ...+.... .+...=-..++.+|.-++..++-..+--.. .+.... . ...+.-+.+.+
T Consensus 17 eDvk~v~eel~~---~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-----~ftgr~kde~~~~L~~Ll~aL 88 (388)
T COG5238 17 EDVKGVVEELEM---MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-----AFTGRDKDELYSNLVMLLKAL 88 (388)
T ss_pred chhhHHHHHHHh---hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-----hhhcccHHHHHHHHHHHHHHH
Confidence 444445444433 23444444 444444577888888888855522111010 122111 0 00112223333
Q ss_pred HhCCCCccEEEcCCCCCC-CCc----hhhcCCCCCcEEEecCCCCCC--ch-------------hhhCCCCCcEEEecCC
Q 039152 87 LRSMLQVRVLDLTDMNLL-SLP----SSIGLLTNLHTLCLYSCILKD--MA-------------VISDLKKLEILCLHGS 146 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~-~lp----~~i~~l~~L~~L~l~~~~~~~--~~-------------~~~~l~~L~~L~l~~~ 146 (259)
-++++|..+++++|.|. ..| +.|+..+.|.+|.+.+|.+.. -. ....-+.|++.....|
T Consensus 89 -lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 -LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred -hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 48999999999999887 333 356788899999999998653 11 2234577999999999
Q ss_pred CCcccchh-----hccCCcCCEEecCCCCCceeeCCC---------CCCCCCcEEEeeccCCC-----ccCCCCcCCCCC
Q 039152 147 SIYQLPVE-----VGQLTQLRSLDLRHCSNLQVIPLN---------KHLPNLTSLELEVNDAN-----TLPRGGLFLEKP 207 (259)
Q Consensus 147 ~i~~lp~~-----i~~l~~L~~L~l~~~~~~~~lp~~---------~~l~~L~~L~l~~~~~~-----~~p~~~~~l~~L 207 (259)
++..-|.. +.....|+.+.+..|. .-|.+ ..+.+|+.||+..|.++ .+...+..++.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNg---Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNG---IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecC---cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 88755432 4445678888888753 23443 67889999999999875 233345567889
Q ss_pred CeEEeecc-cccCCcccc-------cccccceeecccc
Q 039152 208 ERIDLDAN-VRLKDQDTV-------QLWGIEELSLAEL 237 (259)
Q Consensus 208 ~~L~l~~~-~~~~~~~~~-------~l~~L~~L~l~~~ 237 (259)
+.|.+..| ....+...+ ..++|..|...++
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 99999988 444442222 1777777777766
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.46 E-value=3.4e-05 Score=61.49 Aligned_cols=58 Identities=29% Similarity=0.417 Sum_probs=24.7
Q ss_pred CCCCCcEEEecCC--CCCC--chhhhCCCCCcEEEecCCCCcccc--hhhccCCcCCEEecCCC
Q 039152 112 LLTNLHTLCLYSC--ILKD--MAVISDLKKLEILCLHGSSIYQLP--VEVGQLTQLRSLDLRHC 169 (259)
Q Consensus 112 ~l~~L~~L~l~~~--~~~~--~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~ 169 (259)
.+++|++|.++.| ++.. +.....+++|+++++++|+++.+. ..+..+.+|..|++..|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 3445555555555 2222 222223355555555555444210 11333444444444444
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=6.4e-05 Score=61.26 Aligned_cols=104 Identities=22% Similarity=0.235 Sum_probs=68.1
Q ss_pred CCCccEEEcCCCCCCCCc--hhh-cCCCCCcEEEecCCCCCCc----hhhhCCCCCcEEEecCCCCcccchhh-ccCCcC
Q 039152 90 MLQVRVLDLTDMNLLSLP--SSI-GLLTNLHTLCLYSCILKDM----AVISDLKKLEILCLHGSSIYQLPVEV-GQLTQL 161 (259)
Q Consensus 90 l~~L~~L~l~~~~~~~lp--~~i-~~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L 161 (259)
...+..+.+.++.+.... ..+ ..+.+++.+++.+|.+++. .-+.++++|++|+++.|++..--... ..+.+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 334446777777776432 223 3567899999999999983 44567999999999999765221111 356688
Q ss_pred CEEecCCCCCceeeCCC---CCCCCCcEEEeeccCC
Q 039152 162 RSLDLRHCSNLQVIPLN---KHLPNLTSLELEVNDA 194 (259)
Q Consensus 162 ~~L~l~~~~~~~~lp~~---~~l~~L~~L~l~~~~~ 194 (259)
+.|.+.+ ..+..-... ..++.++.|+++.|.+
T Consensus 124 ~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 124 RVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEEEcC-CCCChhhhhhhhhcchhhhhhhhccchh
Confidence 8888876 322211111 5667777888877743
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.16 E-value=0.0017 Score=46.79 Aligned_cols=105 Identities=14% Similarity=0.248 Sum_probs=55.8
Q ss_pred cccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hc
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VG 156 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~ 156 (259)
.++...|.++++|+.+.+.. .+..++. .+..+.+|+.+.+..+ +.. ...+..+.+++.+.+.. .+..++.. +.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 35667788888888888875 4555544 4677778888888764 555 34566777788888865 55555544 55
Q ss_pred cCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeec
Q 039152 157 QLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEV 191 (259)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~ 191 (259)
.+++++.+.+.. + +..++.. .+. +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETT-T--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCc-c-ccEEchhhhcCC-CceEEEECC
Confidence 577788777764 2 4445444 444 666666543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00025 Score=56.69 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=29.0
Q ss_pred CCCCccEEEcCCC--CCC-CCchhhcCCCCCcEEEecCCCCCC---chhhhCCCCCcEEEecCCCCc
Q 039152 89 SMLQVRVLDLTDM--NLL-SLPSSIGLLTNLHTLCLYSCILKD---MAVISDLKKLEILCLHGSSIY 149 (259)
Q Consensus 89 ~l~~L~~L~l~~~--~~~-~lp~~i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~i~ 149 (259)
.+++|+.|.++.| .+. .++...-.+++|++|++++|+++. ...+..+.+|..|++.+|...
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 4455555555555 222 232223334555555555555543 233444455555555555433
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=4e-05 Score=61.83 Aligned_cols=80 Identities=30% Similarity=0.448 Sum_probs=55.4
Q ss_pred CCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC---CCCCCCcEEE
Q 039152 112 LLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN---KHLPNLTSLE 188 (259)
Q Consensus 112 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~---~~l~~L~~L~ 188 (259)
++.+.+.|+..+|.+.+++...+++.|++|.|+-|.|+.+. .+..+++|+.|++.. +.+.++... .++++|+.|-
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence 45566778888888887777778888888888888887773 366777777777776 344444333 5666666666
Q ss_pred eeccC
Q 039152 189 LEVND 193 (259)
Q Consensus 189 l~~~~ 193 (259)
|..|+
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 65554
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.82 E-value=0.00054 Score=33.19 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=14.8
Q ss_pred CCcEEEecCCCCcccchhhcc
Q 039152 137 KLEILCLHGSSIYQLPVEVGQ 157 (259)
Q Consensus 137 ~L~~L~l~~~~i~~lp~~i~~ 157 (259)
+|++|++++|+++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777776554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.37 E-value=0.018 Score=41.40 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=20.6
Q ss_pred hcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecC
Q 039152 110 IGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLR 167 (259)
Q Consensus 110 i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~ 167 (259)
+.++.+|+.+.+.. .+.. ...+..+.+|+.+.+..+ +..++.. +..++.++.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 44445555555543 2333 233444445555555443 4444332 3344345555443
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.25 E-value=0.0017 Score=31.43 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=15.8
Q ss_pred CCcEEEeeccCCCccCCCCcC
Q 039152 183 NLTSLELEVNDANTLPRGGLF 203 (259)
Q Consensus 183 ~L~~L~l~~~~~~~~p~~~~~ 203 (259)
+|++|++++|.++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888888877443
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.84 E-value=0.0069 Score=27.20 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=7.1
Q ss_pred CCcEEEecCCCCcccc
Q 039152 137 KLEILCLHGSSIYQLP 152 (259)
Q Consensus 137 ~L~~L~l~~~~i~~lp 152 (259)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655544
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.73 E-value=0.00039 Score=59.14 Aligned_cols=59 Identities=25% Similarity=0.210 Sum_probs=27.7
Q ss_pred CCCCCCcEEEeeccC-CCc--cCCCCcCCCCCCeEEeecccccCCcccc----cccccceeecccc
Q 039152 179 KHLPNLTSLELEVND-ANT--LPRGGLFLEKPERIDLDANVRLKDQDTV----QLWGIEELSLAEL 237 (259)
Q Consensus 179 ~~l~~L~~L~l~~~~-~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~----~l~~L~~L~l~~~ 237 (259)
.+..+|+.|-++.++ ++. +-..-.+++.|+.+++..+....+.+.. ..+.|+.|.+++|
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshc 382 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHC 382 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhh
Confidence 444555666555554 221 1111124555666666655333332211 1666666666666
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.46 E-value=0.0094 Score=26.75 Aligned_cols=17 Identities=47% Similarity=0.810 Sum_probs=8.4
Q ss_pred CCCcEEEeeccCCCccC
Q 039152 182 PNLTSLELEVNDANTLP 198 (259)
Q Consensus 182 ~~L~~L~l~~~~~~~~p 198 (259)
++|+.|++++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35667777777666655
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.15 E-value=0.0045 Score=54.98 Aligned_cols=108 Identities=26% Similarity=0.352 Sum_probs=61.5
Q ss_pred HhCCCCccEEEcCCC-CCCC--CchhhcCCCCCcEEEecCC-C-CCC-----chhhhCCCCCcEEEecCCC-Cccc-chh
Q 039152 87 LRSMLQVRVLDLTDM-NLLS--LPSSIGLLTNLHTLCLYSC-I-LKD-----MAVISDLKKLEILCLHGSS-IYQL-PVE 154 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~-~~~~--lp~~i~~l~~L~~L~l~~~-~-~~~-----~~~~~~l~~L~~L~l~~~~-i~~l-p~~ 154 (259)
....+.|+.+.+.++ .+.. +-.....+++|+.|+++++ . ... ......+.+|+.++++++. +... -..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 344677777777766 3333 3344556777888888763 2 111 1334445777888887776 4422 112
Q ss_pred hc-cCCcCCEEecCCCCCceeeCCC---CCCCCCcEEEeeccCC
Q 039152 155 VG-QLTQLRSLDLRHCSNLQVIPLN---KHLPNLTSLELEVNDA 194 (259)
Q Consensus 155 i~-~l~~L~~L~l~~~~~~~~lp~~---~~l~~L~~L~l~~~~~ 194 (259)
+. .+++|+.|.+..|..+....-. .++++|++|+++++..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 22 3677888877666542111111 6677788888887653
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.53 E-value=0.035 Score=27.81 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=16.0
Q ss_pred CCCCcEEEecCCCCcccchhh
Q 039152 135 LKKLEILCLHGSSIYQLPVEV 155 (259)
Q Consensus 135 l~~L~~L~l~~~~i~~lp~~i 155 (259)
+++|++|++++|+++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888887764
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.53 E-value=0.035 Score=27.81 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=16.0
Q ss_pred CCCCcEEEecCCCCcccchhh
Q 039152 135 LKKLEILCLHGSSIYQLPVEV 155 (259)
Q Consensus 135 l~~L~~L~l~~~~i~~lp~~i 155 (259)
+++|++|++++|+++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888887764
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.19 E-value=0.028 Score=48.22 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=36.3
Q ss_pred CCCCCCcEEEeeccCC-Cc-----cCCCCcCCCCCCeEEeecccccCCcccc---cccccceeeccccchhhhhhhhhhh
Q 039152 179 KHLPNLTSLELEVNDA-NT-----LPRGGLFLEKPERIDLDANVRLKDQDTV---QLWGIEELSLAELLDHIKNFVNKLV 249 (259)
Q Consensus 179 ~~l~~L~~L~l~~~~~-~~-----~p~~~~~l~~L~~L~l~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~l~ 249 (259)
.+++.|+.|.++.+.. +. +......+..|..+.+.++........- ..++|+.+++-+|....+.....+
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~- 447 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF- 447 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH-
Confidence 4555666666655432 21 1222234555566666665444332111 155666666666633333333333
Q ss_pred hccccccc
Q 039152 250 KVGSSQLK 257 (259)
Q Consensus 250 ~~~l~~L~ 257 (259)
...+|+++
T Consensus 448 ~~~lp~i~ 455 (483)
T KOG4341|consen 448 ATHLPNIK 455 (483)
T ss_pred HhhCccce
Confidence 44555554
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.00 E-value=0.014 Score=51.72 Aligned_cols=103 Identities=25% Similarity=0.249 Sum_probs=45.3
Q ss_pred CCCCcEEEecCC-CCcc--cchhhccCCcCCEEecCCC-CCceeeCCC-----CCCCCCcEEEeeccC-CCc--cCCCCc
Q 039152 135 LKKLEILCLHGS-SIYQ--LPVEVGQLTQLRSLDLRHC-SNLQVIPLN-----KHLPNLTSLELEVND-ANT--LPRGGL 202 (259)
Q Consensus 135 l~~L~~L~l~~~-~i~~--lp~~i~~l~~L~~L~l~~~-~~~~~lp~~-----~~l~~L~~L~l~~~~-~~~--~p~~~~ 202 (259)
++.|+.+.+.++ .+.. +-......++|+.|+++.| ......+.. ..+++|+.|+++++. ++. +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555544 2322 2233445555666655542 111111110 344556666665554 321 111111
Q ss_pred CCCCCCeEEeecccccCCccccc----ccccceeecccc
Q 039152 203 FLEKPERIDLDANVRLKDQDTVQ----LWGIEELSLAEL 237 (259)
Q Consensus 203 ~l~~L~~L~l~~~~~~~~~~~~~----l~~L~~L~l~~~ 237 (259)
.+++|+.|.+.+|....+..... +++|+.|+++.|
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 25566666655554332211111 555666666666
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.82 E-value=0.039 Score=27.61 Aligned_cols=22 Identities=45% Similarity=0.815 Sum_probs=17.6
Q ss_pred CCCCcEEEeeccCCCccCCCCc
Q 039152 181 LPNLTSLELEVNDANTLPRGGL 202 (259)
Q Consensus 181 l~~L~~L~l~~~~~~~~p~~~~ 202 (259)
+++|+.|++++|.++.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678899999999988887643
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.82 E-value=0.039 Score=27.61 Aligned_cols=22 Identities=45% Similarity=0.815 Sum_probs=17.6
Q ss_pred CCCCcEEEeeccCCCccCCCCc
Q 039152 181 LPNLTSLELEVNDANTLPRGGL 202 (259)
Q Consensus 181 l~~L~~L~l~~~~~~~~p~~~~ 202 (259)
+++|+.|++++|.++.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678899999999988887643
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.36 E-value=0.0021 Score=50.85 Aligned_cols=80 Identities=21% Similarity=0.183 Sum_probs=37.6
Q ss_pred CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152 89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 167 (259)
.++..++||++.|.+..+...++.+..|..|+++.|.+.- |...+.+..+..+++..|..+..|.+.+..+++++++..
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 4445555555555444444444444444444444444444 444444444444444444444444444444444444444
Q ss_pred C
Q 039152 168 H 168 (259)
Q Consensus 168 ~ 168 (259)
.
T Consensus 120 ~ 120 (326)
T KOG0473|consen 120 K 120 (326)
T ss_pred c
Confidence 3
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.14 E-value=0.0019 Score=51.15 Aligned_cols=86 Identities=22% Similarity=0.138 Sum_probs=73.9
Q ss_pred hhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcE
Q 039152 109 SIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTS 186 (259)
Q Consensus 109 ~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~ 186 (259)
.|......+.||++.|++.. -..++.++.|..|+++.|.+..+|..++.+..++++++.. ++....|.. +..+++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcch
Confidence 46778889999999998777 5677788889999999999999999999999999998876 667778877 88999999
Q ss_pred EEeeccCCC
Q 039152 187 LELEVNDAN 195 (259)
Q Consensus 187 L~l~~~~~~ 195 (259)
+++.++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 999888764
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.53 E-value=0.03 Score=43.41 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=13.5
Q ss_pred CcEEEecCCCCCC--chhhhCCCCCcEEEecCC
Q 039152 116 LHTLCLYSCILKD--MAVISDLKKLEILCLHGS 146 (259)
Q Consensus 116 L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~ 146 (259)
++.++-+++.+.. ...+..++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3444444444433 344444444444444443
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.15 E-value=0.085 Score=41.00 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=45.4
Q ss_pred CccEEEcCCCCCCC-CchhhcCCCCCcEEEecCCCCCC---chhhhC-CCCCcEEEecCC-CCccc-chhhccCCcCCEE
Q 039152 92 QVRVLDLTDMNLLS-LPSSIGLLTNLHTLCLYSCILKD---MAVISD-LKKLEILCLHGS-SIYQL-PVEVGQLTQLRSL 164 (259)
Q Consensus 92 ~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~---~~~~~~-l~~L~~L~l~~~-~i~~l-p~~i~~l~~L~~L 164 (259)
.+..++-+++.+.. =-..+.+++.++.|.+.+|.--+ ...++. .++|+.|++++| +|++- -..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 35566666665542 12335566777777777776333 344444 367888888876 45522 2336667777777
Q ss_pred ecCC
Q 039152 165 DLRH 168 (259)
Q Consensus 165 ~l~~ 168 (259)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.34 E-value=0.61 Score=23.39 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=15.6
Q ss_pred CCCcEEEeeccCCCccCCC
Q 039152 182 PNLTSLELEVNDANTLPRG 200 (259)
Q Consensus 182 ~~L~~L~l~~~~~~~~p~~ 200 (259)
.+|+.|++++|.++++|+.
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred cccceeecCCCccccCccc
Confidence 4688899999999888874
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.92 E-value=0.49 Score=22.95 Aligned_cols=14 Identities=36% Similarity=0.368 Sum_probs=5.7
Q ss_pred CCCcEEEecCCCCc
Q 039152 136 KKLEILCLHGSSIY 149 (259)
Q Consensus 136 ~~L~~L~l~~~~i~ 149 (259)
++|++|++++|++.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555443
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.97 E-value=1.5 Score=21.95 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=10.8
Q ss_pred CCCCcEEEecCCCCccc
Q 039152 135 LKKLEILCLHGSSIYQL 151 (259)
Q Consensus 135 l~~L~~L~l~~~~i~~l 151 (259)
+.+|+.|+++.|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35677777777766533
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=79.95 E-value=0.021 Score=50.93 Aligned_cols=152 Identities=28% Similarity=0.274 Sum_probs=88.7
Q ss_pred HHhCCCCccEEEcCCCCCCC-----CchhhcCC-CCCcEEEecCCCCCC------chhhhCCCCCcEEEecCCCCc----
Q 039152 86 LLRSMLQVRVLDLTDMNLLS-----LPSSIGLL-TNLHTLCLYSCILKD------MAVISDLKKLEILCLHGSSIY---- 149 (259)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l-~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~i~---- 149 (259)
.+....+|..|++++|.+.. +-..+... ..+++|.+..|.++. ...+....+++.++++.|.+.
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 34667788888888888762 11222232 456778888787665 255666778888888888653
Q ss_pred -ccchhhc----cCCcCCEEecCCCCCceeeCCC-----CCCCC-CcEEEeeccCCC-----ccCCCCcCC-CCCCeEEe
Q 039152 150 -QLPVEVG----QLTQLRSLDLRHCSNLQVIPLN-----KHLPN-LTSLELEVNDAN-----TLPRGGLFL-EKPERIDL 212 (259)
Q Consensus 150 -~lp~~i~----~l~~L~~L~l~~~~~~~~lp~~-----~~l~~-L~~L~l~~~~~~-----~~p~~~~~l-~~L~~L~l 212 (259)
.++..+. ...++++|++.+|......-.. ...+. +..|++..|.+. .+.+.+..+ ..++.+++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 2233333 4677888888886533111000 33333 555777777764 223333444 56677777
Q ss_pred ecccccCCc-cc-----ccccccceeecccc
Q 039152 213 DANVRLKDQ-DT-----VQLWGIEELSLAEL 237 (259)
Q Consensus 213 ~~~~~~~~~-~~-----~~l~~L~~L~l~~~ 237 (259)
..|...... .. ..++.++.+.+..+
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 777444432 11 11556777776655
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.12 E-value=3.6 Score=20.80 Aligned_cols=14 Identities=36% Similarity=0.309 Sum_probs=8.1
Q ss_pred CCcEEEecCCCCCC
Q 039152 115 NLHTLCLYSCILKD 128 (259)
Q Consensus 115 ~L~~L~l~~~~~~~ 128 (259)
+|++|+|++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45666666665543
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=69.04 E-value=3.4 Score=20.36 Aligned_cols=14 Identities=50% Similarity=0.961 Sum_probs=7.1
Q ss_pred CcCCEEecCCCCCc
Q 039152 159 TQLRSLDLRHCSNL 172 (259)
Q Consensus 159 ~~L~~L~l~~~~~~ 172 (259)
++|++|++++|..+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 34555555555433
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=60.59 E-value=0.36 Score=43.14 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=18.6
Q ss_pred CCCcEEEeeccCCC-----ccCCCCcCCCCCCeEEeeccccc
Q 039152 182 PNLTSLELEVNDAN-----TLPRGGLFLEKPERIDLDANVRL 218 (259)
Q Consensus 182 ~~L~~L~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~ 218 (259)
..++.++++.|.++ .++..+..++.++++.+.++...
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44556666666553 23333344555556665555333
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.39 E-value=5 Score=36.20 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=41.5
Q ss_pred CCCCCcEEEecCCCCCCc---hhhh-CCCCCcEEEecCC--CCcccchhhcc--CCcCCEEecCCCCCceeeCCC-----
Q 039152 112 LLTNLHTLCLYSCILKDM---AVIS-DLKKLEILCLHGS--SIYQLPVEVGQ--LTQLRSLDLRHCSNLQVIPLN----- 178 (259)
Q Consensus 112 ~l~~L~~L~l~~~~~~~~---~~~~-~l~~L~~L~l~~~--~i~~lp~~i~~--l~~L~~L~l~~~~~~~~lp~~----- 178 (259)
+.+.+..+++++|++... .++. ..++|.+|+|++| .+...+ ++++ ...|+.|-+.+|.....+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 455566677777776662 3332 3467788888777 333221 1222 233666667666555544433
Q ss_pred ---CCCCCCcEEE
Q 039152 179 ---KHLPNLTSLE 188 (259)
Q Consensus 179 ---~~l~~L~~L~ 188 (259)
..+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 3555555554
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.09 E-value=15 Score=33.29 Aligned_cols=77 Identities=25% Similarity=0.294 Sum_probs=50.4
Q ss_pred CCCCccEEEcCCCCCCCCc---hhhcCCCCCcEEEecCC--CCCCchhhhCC--CCCcEEEecCCCCc-cc--ch-hhc-
Q 039152 89 SMLQVRVLDLTDMNLLSLP---SSIGLLTNLHTLCLYSC--ILKDMAVISDL--KKLEILCLHGSSIY-QL--PV-EVG- 156 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~~--~~~~~~~~~~l--~~L~~L~l~~~~i~-~l--p~-~i~- 156 (259)
+.+.+..+.+++|++..+. .--...++|..|+|++| .+....++.++ ..|+.|-+.+|.+. .. +. .+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 5677788889999876433 22345688999999999 44443444443 35889999999775 11 21 132
Q ss_pred ---cCCcCCEEe
Q 039152 157 ---QLTQLRSLD 165 (259)
Q Consensus 157 ---~l~~L~~L~ 165 (259)
.+++|..|+
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 567777664
No 92
>PF13076 DUF3940: Protein of unknown function (DUF3940)
Probab=31.20 E-value=58 Score=17.98 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCccccCCC---cEEccHHHHH
Q 039152 18 HTLVNKLKAFCMLLDDDE---NIFMHDVACD 45 (259)
Q Consensus 18 ~~~i~~L~~~~l~~~~~~---~~~mHdli~d 45 (259)
+.+|+.|++.+++...+. ...+.+|.++
T Consensus 4 ~~lI~~Li~~Giyk~~drqL~Eltl~ELe~e 34 (38)
T PF13076_consen 4 DFLIEKLIQSGIYKKEDRQLYELTLSELEKE 34 (38)
T ss_pred HHHHHHHHHcCCcCccchHHHHcCHHHHHHH
Confidence 357899999999988764 3444455443
No 93
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=30.24 E-value=1.5e+02 Score=18.94 Aligned_cols=37 Identities=5% Similarity=0.126 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCccccCCCcEEccHHHHHHHHHH
Q 039152 14 RARVHTLVNKLKAFCMLLDDDENIFMHDVACDVAISI 50 (259)
Q Consensus 14 ~~~~~~~i~~L~~~~l~~~~~~~~~mHdli~dl~~~~ 50 (259)
...+..+++.|.+++++...++.|++-+-=.++....
T Consensus 33 ~~~~~~yL~~L~~~gLI~~~~~~Y~lTekG~~~l~~l 69 (77)
T PF14947_consen 33 YSTLKKYLKELEEKGLIKKKDGKYRLTEKGKEFLEEL 69 (77)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCeeCCCCEEEECccHHHHHHHH
Confidence 4577889999999999988788888876655555443
No 94
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=30.12 E-value=83 Score=17.38 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcCccccCCCcEEcc
Q 039152 14 RARVHTLVNKLKAFCMLLDDDENIFMH 40 (259)
Q Consensus 14 ~~~~~~~i~~L~~~~l~~~~~~~~~mH 40 (259)
...+...++.|.+.+++....+.+.+|
T Consensus 22 ~~tv~~~l~~L~~~g~l~~~~~~~~i~ 48 (48)
T smart00419 22 RETVSRTLKRLEKEGLISREGGRIVIL 48 (48)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEC
Confidence 456777889999999998776677665
No 95
>PF14162 YozD: YozD-like protein
Probab=29.09 E-value=51 Score=19.46 Aligned_cols=37 Identities=8% Similarity=0.053 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCccccCCCcEEccHHHHHHHHHH
Q 039152 14 RARVHTLVNKLKAFCMLLDDDENIFMHDVACDVAISI 50 (259)
Q Consensus 14 ~~~~~~~i~~L~~~~l~~~~~~~~~mHdli~dl~~~~ 50 (259)
|+.++-.+++|+.|+++-....-..+-|+-.|....+
T Consensus 11 EEIAefFy~eL~kRGyvP~e~El~eiADItFeYll~K 47 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVPTEEELEEIADITFEYLLEK 47 (57)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHH
Confidence 4444445667777888876655556666666655443
No 96
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=25.42 E-value=90 Score=19.53 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCccccCCCcEEccHH
Q 039152 14 RARVHTLVNKLKAFCMLLDDDENIFMHDV 42 (259)
Q Consensus 14 ~~~~~~~i~~L~~~~l~~~~~~~~~mHdl 42 (259)
...+...+++|.+.++|+...+++.++|.
T Consensus 42 r~tv~r~l~~l~~~g~I~~~~~~i~I~d~ 70 (76)
T PF13545_consen 42 RETVSRILKRLKDEGIIEVKRGKIIILDP 70 (76)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEESSH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEECCH
Confidence 55778889999999999998889999886
Done!