Query 039152
Match_columns 259
No_of_seqs 265 out of 2366
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 11:12:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 7.1E-22 2.4E-26 166.1 12.2 173 81-258 95-281 (328)
2 4fcg_A Uncharacterized protein 99.9 1.5E-21 5.2E-26 164.0 10.4 174 80-258 117-305 (328)
3 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-19 4.2E-24 149.2 13.5 175 80-258 45-229 (285)
4 3zyi_A Leucine-rich repeat-con 99.8 4.7E-19 1.6E-23 155.0 13.5 135 80-215 88-228 (452)
5 1h6u_A Internalin H; cell adhe 99.8 8.6E-19 2.9E-23 146.0 14.1 146 88-237 60-205 (308)
6 3zyj_A Leucine-rich repeat-con 99.8 4.6E-19 1.6E-23 154.6 12.9 135 80-215 77-217 (440)
7 2o6q_A Variable lymphocyte rec 99.8 1.8E-18 6E-23 141.3 15.0 157 80-237 50-215 (270)
8 1ogq_A PGIP-2, polygalacturona 99.8 2E-19 6.8E-24 150.1 9.2 149 88-237 98-254 (313)
9 2z66_A Variable lymphocyte rec 99.8 1.8E-19 6.3E-24 149.6 8.7 149 89-237 76-233 (306)
10 3rfs_A Internalin B, repeat mo 99.8 2.1E-18 7.2E-23 141.1 14.7 149 87-237 59-215 (272)
11 3zyj_A Leucine-rich repeat-con 99.8 1.4E-18 4.9E-23 151.4 14.4 175 80-258 101-283 (440)
12 1ogq_A PGIP-2, polygalacturona 99.8 3.7E-19 1.2E-23 148.5 9.1 172 81-258 67-248 (313)
13 2xwt_C Thyrotropin receptor; s 99.8 3.1E-19 1.1E-23 143.2 8.2 172 80-258 44-230 (239)
14 2z80_A TOLL-like receptor 2, v 99.8 7.9E-19 2.7E-23 148.7 10.7 158 80-237 65-232 (353)
15 3o6n_A APL1; leucine-rich repe 99.8 2.3E-18 7.7E-23 147.8 12.9 116 80-196 58-179 (390)
16 1p9a_G Platelet glycoprotein I 99.8 3E-18 1E-22 141.5 13.2 171 80-258 23-199 (290)
17 3zyi_A Leucine-rich repeat-con 99.8 1.8E-18 6.2E-23 151.3 12.5 176 80-259 112-295 (452)
18 1p9a_G Platelet glycoprotein I 99.8 1.7E-18 5.8E-23 142.9 11.5 156 80-237 44-205 (290)
19 3oja_B Anopheles plasmodium-re 99.8 2.1E-18 7.3E-23 155.9 12.6 117 80-196 64-185 (597)
20 3rgz_A Protein brassinosteroid 99.8 5.2E-18 1.8E-22 157.6 15.1 174 81-258 457-708 (768)
21 2o6q_A Variable lymphocyte rec 99.8 1.2E-17 4E-22 136.4 15.2 172 80-258 29-209 (270)
22 4ezg_A Putative uncharacterize 99.8 2.3E-18 7.8E-23 134.2 10.5 148 88-237 41-191 (197)
23 1h6u_A Internalin H; cell adhe 99.8 4.3E-18 1.5E-22 141.7 12.6 163 88-259 38-200 (308)
24 3o6n_A APL1; leucine-rich repe 99.8 8.5E-18 2.9E-22 144.2 14.5 66 180-247 246-313 (390)
25 4eco_A Uncharacterized protein 99.8 5.4E-19 1.9E-23 160.9 7.4 163 81-248 197-396 (636)
26 3oja_B Anopheles plasmodium-re 99.8 6.5E-18 2.2E-22 152.8 14.3 74 180-257 252-327 (597)
27 1h6t_A Internalin B; cell adhe 99.8 4.7E-18 1.6E-22 140.4 12.0 147 87-237 64-210 (291)
28 1ozn_A Reticulon 4 receptor; N 99.8 1.8E-17 6.1E-22 136.3 15.4 157 80-237 69-235 (285)
29 4ecn_A Leucine-rich repeat pro 99.8 1.5E-18 5E-23 162.1 9.9 160 82-246 440-636 (876)
30 2z62_A TOLL-like receptor 4, v 99.8 1.4E-18 4.9E-23 142.2 8.3 114 83-196 44-163 (276)
31 1wwl_A Monocyte differentiatio 99.7 1.2E-18 4.1E-23 145.3 7.3 171 81-258 110-300 (312)
32 4fmz_A Internalin; leucine ric 99.7 1.8E-17 6.2E-22 139.9 14.6 163 88-258 63-247 (347)
33 3m19_A Variable lymphocyte rec 99.7 2.1E-17 7.1E-22 133.5 14.3 154 80-237 27-189 (251)
34 2z80_A TOLL-like receptor 2, v 99.7 4.6E-18 1.6E-22 144.1 10.9 173 79-258 43-226 (353)
35 3rgz_A Protein brassinosteroid 99.7 1.6E-17 5.5E-22 154.3 14.4 169 87-258 438-684 (768)
36 3rfs_A Internalin B, repeat mo 99.7 5.3E-17 1.8E-21 132.7 15.9 154 87-247 81-241 (272)
37 2z66_A Variable lymphocyte rec 99.7 6E-18 2.1E-22 140.5 10.4 176 80-258 41-227 (306)
38 1xku_A Decorin; proteoglycan, 99.7 1.6E-17 5.6E-22 139.3 12.5 173 80-258 65-267 (330)
39 2z81_A CD282 antigen, TOLL-lik 99.7 1.2E-17 4.3E-22 149.2 12.1 157 81-237 40-206 (549)
40 1h6t_A Internalin B; cell adhe 99.7 2.9E-17 9.9E-22 135.6 13.2 126 87-216 86-211 (291)
41 3m19_A Variable lymphocyte rec 99.7 8.7E-17 3E-21 129.8 15.6 138 80-218 48-192 (251)
42 1xku_A Decorin; proteoglycan, 99.7 3.2E-17 1.1E-21 137.5 13.2 162 81-247 90-281 (330)
43 2id5_A Lingo-1, leucine rich r 99.7 4E-17 1.4E-21 143.6 14.2 119 80-198 45-168 (477)
44 3v47_A TOLL-like receptor 5B a 99.7 3.5E-17 1.2E-21 143.0 12.9 90 81-170 69-165 (455)
45 4ecn_A Leucine-rich repeat pro 99.7 1.1E-17 3.8E-22 156.2 10.1 139 82-221 481-635 (876)
46 3t6q_A CD180 antigen; protein- 99.7 6.3E-17 2.1E-21 146.3 14.6 136 80-215 267-410 (606)
47 2id5_A Lingo-1, leucine rich r 99.7 6.1E-17 2.1E-21 142.4 14.1 83 86-168 75-161 (477)
48 1xeu_A Internalin C; cellular 99.7 4E-17 1.4E-21 132.8 11.8 146 87-237 37-182 (263)
49 3o53_A Protein LRIM1, AGAP0063 99.7 9.5E-18 3.2E-22 140.1 8.2 156 80-237 47-247 (317)
50 2z81_A CD282 antigen, TOLL-lik 99.7 7E-17 2.4E-21 144.3 13.7 153 80-237 323-483 (549)
51 2xwt_C Thyrotropin receptor; s 99.7 2.6E-17 8.7E-22 131.9 9.7 174 79-259 23-210 (239)
52 2ft3_A Biglycan; proteoglycan, 99.7 6.1E-17 2.1E-21 136.0 12.0 171 80-257 67-267 (332)
53 1m9s_A Internalin B; cell inva 99.7 3.6E-17 1.2E-21 147.7 11.3 153 87-245 61-213 (605)
54 3o53_A Protein LRIM1, AGAP0063 99.7 2.2E-17 7.7E-22 137.9 9.2 175 80-259 23-242 (317)
55 2ft3_A Biglycan; proteoglycan, 99.7 3.3E-17 1.1E-21 137.6 10.3 170 80-258 46-245 (332)
56 2z62_A TOLL-like receptor 4, v 99.7 5.6E-17 1.9E-21 132.7 11.1 172 80-258 20-228 (276)
57 3e6j_A Variable lymphocyte rec 99.7 2.8E-16 9.4E-21 125.2 14.6 135 80-218 32-172 (229)
58 4eco_A Uncharacterized protein 99.7 1.5E-17 5.2E-22 151.4 8.1 133 82-215 239-387 (636)
59 1m9s_A Internalin B; cell inva 99.7 1.1E-16 3.8E-21 144.5 13.1 129 87-219 83-211 (605)
60 2o6s_A Variable lymphocyte rec 99.7 2.1E-16 7.2E-21 123.9 13.1 159 80-248 20-185 (208)
61 3v47_A TOLL-like receptor 5B a 99.7 8.4E-17 2.9E-21 140.6 11.7 119 137-258 276-399 (455)
62 3oja_A Leucine-rich immune mol 99.7 5.6E-17 1.9E-21 143.2 10.2 123 114-237 120-247 (487)
63 4fmz_A Internalin; leucine ric 99.7 4E-16 1.4E-20 131.6 15.0 81 155-237 217-297 (347)
64 3vq2_A TLR4, TOLL-like recepto 99.7 6.3E-17 2.2E-21 146.3 10.5 171 83-258 369-549 (606)
65 3bz5_A Internalin-J, INLJ; leu 99.7 2.4E-16 8.2E-21 138.0 13.1 156 87-258 60-216 (457)
66 1xeu_A Internalin C; cellular 99.7 4E-17 1.4E-21 132.8 7.5 161 89-259 17-177 (263)
67 3oja_A Leucine-rich immune mol 99.7 8.1E-17 2.8E-21 142.2 9.5 173 80-258 47-241 (487)
68 3vq2_A TLR4, TOLL-like recepto 99.7 5.3E-17 1.8E-21 146.8 8.6 168 88-259 347-526 (606)
69 4ezg_A Putative uncharacterize 99.7 2E-16 6.8E-21 123.1 10.3 134 80-217 57-193 (197)
70 2v9t_B SLIT homolog 2 protein 99.7 8.5E-16 2.9E-20 121.7 14.1 135 80-218 24-165 (220)
71 3t6q_A CD180 antigen; protein- 99.7 3.5E-16 1.2E-20 141.5 13.2 157 81-237 242-410 (606)
72 2v9t_B SLIT homolog 2 protein 99.7 3.8E-16 1.3E-20 123.7 11.4 141 94-237 14-162 (220)
73 4glp_A Monocyte differentiatio 99.7 3.5E-17 1.2E-21 136.2 5.4 147 89-237 143-304 (310)
74 1ziw_A TOLL-like receptor 3; i 99.7 3.8E-16 1.3E-20 143.1 12.8 124 91-215 25-155 (680)
75 1o6v_A Internalin A; bacterial 99.7 1E-15 3.4E-20 134.4 14.6 80 87-168 173-252 (466)
76 1wwl_A Monocyte differentiatio 99.7 3.3E-16 1.1E-20 130.5 10.9 154 81-237 135-306 (312)
77 3bz5_A Internalin-J, INLJ; leu 99.7 8.7E-16 3E-20 134.5 14.0 142 87-237 81-222 (457)
78 2z63_A TOLL-like receptor 4, v 99.7 1.4E-16 4.8E-21 142.8 8.7 150 88-237 370-528 (570)
79 2ell_A Acidic leucine-rich nuc 99.7 2.9E-16 1E-20 118.9 9.1 130 89-219 22-161 (168)
80 1o6v_A Internalin A; bacterial 99.7 1.2E-15 4.1E-20 133.9 13.9 124 111-237 240-363 (466)
81 4g8a_A TOLL-like receptor 4; l 99.7 4.6E-16 1.6E-20 140.8 11.5 134 79-216 43-184 (635)
82 3e6j_A Variable lymphocyte rec 99.7 9E-16 3.1E-20 122.3 11.8 142 93-237 21-169 (229)
83 1ziw_A TOLL-like receptor 3; i 99.6 7.2E-16 2.5E-20 141.2 12.3 116 129-247 473-602 (680)
84 4g8a_A TOLL-like receptor 4; l 99.6 1.2E-15 4.2E-20 138.0 13.4 147 95-246 35-190 (635)
85 2v70_A SLIT-2, SLIT homolog 2 99.6 2.3E-15 7.7E-20 119.2 13.0 136 80-218 24-166 (220)
86 2z7x_B TOLL-like receptor 1, v 99.6 1.7E-15 6E-20 134.5 13.6 139 94-237 3-148 (520)
87 4glp_A Monocyte differentiatio 99.6 8E-16 2.7E-20 128.0 10.5 172 81-259 106-299 (310)
88 2z7x_B TOLL-like receptor 1, v 99.6 2.6E-15 9E-20 133.3 13.6 149 88-237 321-478 (520)
89 2v70_A SLIT-2, SLIT homolog 2 99.6 3.3E-15 1.1E-19 118.2 12.7 141 94-237 14-163 (220)
90 2xot_A Amphoterin-induced prot 99.6 2.7E-15 9.3E-20 127.4 13.0 154 80-237 31-199 (361)
91 3cvr_A Invasion plasmid antige 99.6 1.9E-15 6.4E-20 135.3 11.9 133 90-237 99-240 (571)
92 2je0_A Acidic leucine-rich nuc 99.6 3.7E-16 1.3E-20 116.0 5.9 124 89-213 15-148 (149)
93 2o6s_A Variable lymphocyte rec 99.6 1.3E-14 4.4E-19 113.7 14.9 141 94-237 10-158 (208)
94 1a9n_A U2A', U2A'; complex (nu 99.6 5.3E-16 1.8E-20 118.5 6.6 126 88-215 16-150 (176)
95 3j0a_A TOLL-like receptor 5; m 99.6 3.2E-15 1.1E-19 140.3 13.2 126 90-215 23-158 (844)
96 3j0a_A TOLL-like receptor 5; m 99.6 7.6E-15 2.6E-19 137.7 15.4 77 179-258 287-366 (844)
97 2xot_A Amphoterin-induced prot 99.6 4E-15 1.4E-19 126.4 12.2 147 94-245 21-179 (361)
98 2z63_A TOLL-like receptor 4, v 99.6 2.4E-15 8.2E-20 134.8 11.4 123 92-215 29-159 (570)
99 4ay9_X Follicle-stimulating ho 99.6 1E-15 3.6E-20 129.5 8.1 175 80-257 43-229 (350)
100 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 7.1E-15 2.4E-19 131.9 13.5 148 88-237 350-507 (562)
101 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1E-14 3.5E-19 130.8 14.5 163 91-259 331-502 (562)
102 2ast_B S-phase kinase-associat 99.6 1.8E-16 6.3E-21 133.0 2.6 169 88-259 90-277 (336)
103 1w8a_A SLIT protein; signaling 99.6 1.1E-14 3.8E-19 112.7 12.4 120 94-216 11-137 (192)
104 2ca6_A RAN GTPase-activating p 99.6 4.1E-16 1.4E-20 133.6 3.5 170 87-259 90-308 (386)
105 2ast_B S-phase kinase-associat 99.6 1.4E-15 4.8E-20 127.6 6.1 153 85-237 112-282 (336)
106 2wfh_A SLIT homolog 2 protein 99.6 3.4E-14 1.2E-18 110.1 13.4 119 94-215 13-136 (193)
107 2ell_A Acidic leucine-rich nuc 99.6 3.3E-15 1.1E-19 113.1 6.4 132 112-246 22-164 (168)
108 3g06_A SSPH2 (leucine-rich rep 99.6 5E-14 1.7E-18 127.5 14.1 68 182-258 221-288 (622)
109 1jl5_A Outer protein YOPM; leu 99.5 4.6E-14 1.6E-18 123.4 13.1 136 91-237 131-267 (454)
110 1dce_A Protein (RAB geranylger 99.5 1.1E-15 3.7E-20 137.1 2.8 174 80-259 362-565 (567)
111 3cvr_A Invasion plasmid antige 99.5 6.4E-14 2.2E-18 125.4 14.0 156 80-259 72-235 (571)
112 1dce_A Protein (RAB geranylger 99.5 2.6E-14 9.1E-19 128.1 11.2 151 83-234 401-567 (567)
113 1a9n_A U2A', U2A'; complex (nu 99.5 2.7E-14 9.1E-19 109.0 8.5 126 110-237 15-150 (176)
114 1jl5_A Outer protein YOPM; leu 99.5 1.1E-13 3.7E-18 121.1 13.1 145 90-246 110-254 (454)
115 2ca6_A RAN GTPase-activating p 99.5 8.6E-15 2.9E-19 125.3 5.6 171 87-259 56-279 (386)
116 3g06_A SSPH2 (leucine-rich rep 99.5 8.8E-14 3E-18 125.8 12.5 132 89-237 79-211 (622)
117 2o6r_A Variable lymphocyte rec 99.5 2.7E-13 9.1E-18 103.4 13.3 124 93-219 9-138 (177)
118 4b8c_D Glucose-repressible alc 99.5 3.2E-14 1.1E-18 131.2 9.3 113 82-195 215-329 (727)
119 4b8c_D Glucose-repressible alc 99.5 4E-14 1.4E-18 130.5 9.0 118 100-218 210-329 (727)
120 2je0_A Acidic leucine-rich nuc 99.5 1.6E-14 5.6E-19 107.0 5.0 123 112-235 15-148 (149)
121 1w8a_A SLIT protein; signaling 99.5 1.4E-13 4.6E-18 106.6 9.7 113 80-195 21-139 (192)
122 3goz_A Leucine-rich repeat-con 99.5 3.4E-14 1.2E-18 120.6 6.3 158 85-244 44-240 (362)
123 2wfh_A SLIT homolog 2 protein 99.5 4E-13 1.4E-17 104.0 11.4 112 80-195 23-139 (193)
124 4ay9_X Follicle-stimulating ho 99.4 3.2E-13 1.1E-17 114.1 9.4 155 81-237 94-256 (350)
125 1ds9_A Outer arm dynein; leuci 99.4 7.2E-16 2.5E-20 120.0 -6.7 110 105-215 39-150 (198)
126 2r9u_A Variable lymphocyte rec 99.4 8.9E-13 3E-17 100.4 9.4 105 93-200 14-123 (174)
127 1ds9_A Outer arm dynein; leuci 99.4 2.2E-15 7.7E-20 117.2 -5.2 128 80-211 38-180 (198)
128 3g39_A Variable lymphocyte rec 99.4 1.9E-12 6.5E-17 98.1 10.5 105 92-199 10-119 (170)
129 1z7x_W Ribonuclease inhibitor; 99.4 5.5E-14 1.9E-18 122.8 1.4 149 89-237 197-380 (461)
130 1z7x_W Ribonuclease inhibitor; 99.4 4.8E-14 1.6E-18 123.2 0.9 151 87-237 52-237 (461)
131 3goz_A Leucine-rich repeat-con 99.4 1.3E-13 4.6E-18 117.0 3.3 79 91-169 80-177 (362)
132 2o6r_A Variable lymphocyte rec 99.4 6.2E-12 2.1E-16 95.8 11.4 114 80-197 20-139 (177)
133 3ogk_B Coronatine-insensitive 99.3 4E-12 1.4E-16 114.4 7.0 129 88-216 161-304 (592)
134 2r9u_A Variable lymphocyte rec 99.3 3.6E-11 1.2E-15 91.4 10.2 102 116-220 14-120 (174)
135 3g39_A Variable lymphocyte rec 99.2 4.6E-11 1.6E-15 90.4 10.2 103 115-220 10-117 (170)
136 3sb4_A Hypothetical leucine ri 99.2 2.2E-11 7.6E-16 101.9 8.2 174 80-259 82-326 (329)
137 2ifg_A High affinity nerve gro 99.1 3.3E-10 1.1E-14 95.3 10.0 97 97-195 14-116 (347)
138 3ogk_B Coronatine-insensitive 99.1 4.6E-11 1.6E-15 107.4 4.7 127 87-213 188-350 (592)
139 2p1m_B Transport inhibitor res 99.0 1.5E-11 5.1E-16 110.7 -1.3 82 88-169 102-194 (594)
140 2p1m_B Transport inhibitor res 99.0 6.9E-11 2.4E-15 106.3 2.4 55 180-234 287-345 (594)
141 2ifg_A High affinity nerve gro 99.0 1.8E-09 6.3E-14 90.7 10.4 99 117-217 11-115 (347)
142 3sb4_A Hypothetical leucine ri 99.0 1.8E-09 6.3E-14 90.2 8.6 152 80-234 113-328 (329)
143 3un9_A NLR family member X1; l 98.9 1E-10 3.6E-15 99.5 -1.5 33 136-168 155-192 (372)
144 4fdw_A Leucine rich hypothetic 98.8 2.3E-08 7.8E-13 85.9 11.3 63 81-144 170-234 (401)
145 3un9_A NLR family member X1; l 98.8 5.6E-10 1.9E-14 95.0 0.4 153 90-244 71-254 (372)
146 4fdw_A Leucine rich hypothetic 98.7 8.8E-08 3E-12 82.2 11.8 140 110-258 176-327 (401)
147 2ra8_A Uncharacterized protein 98.6 2.6E-08 9.1E-13 84.2 5.4 149 88-237 136-317 (362)
148 1io0_A Tropomodulin; LRR prote 98.5 3.7E-08 1.3E-12 75.4 3.6 82 85-166 30-128 (185)
149 2ra8_A Uncharacterized protein 98.5 6.3E-08 2.1E-12 81.9 3.8 130 85-216 166-318 (362)
150 3rw6_A Nuclear RNA export fact 98.3 1.1E-06 3.7E-11 70.9 7.3 76 112-188 168-257 (267)
151 1io0_A Tropomodulin; LRR prote 98.3 2E-07 6.9E-12 71.2 1.4 63 107-169 29-103 (185)
152 3e4g_A ATP synthase subunit S, 98.2 1.2E-06 4E-11 66.0 5.2 84 91-174 61-154 (176)
153 3e4g_A ATP synthase subunit S, 98.2 1.1E-06 3.8E-11 66.2 3.8 59 114-172 61-127 (176)
154 3rw6_A Nuclear RNA export fact 98.1 2.4E-06 8.2E-11 68.9 4.8 79 133-212 167-258 (267)
155 2a5y_B CED-4; apoptosis; HET: 97.7 6.6E-06 2.3E-10 73.4 0.5 53 2-55 416-472 (549)
156 4fs7_A Uncharacterized protein 97.4 0.00061 2.1E-08 57.9 9.0 74 179-258 317-392 (394)
157 4fs7_A Uncharacterized protein 97.4 0.0019 6.5E-08 54.9 11.8 142 85-231 247-392 (394)
158 4h09_A Hypothetical leucine ri 97.2 0.0047 1.6E-07 52.0 12.6 120 112-235 215-341 (379)
159 4gt6_A Cell surface protein; l 97.1 0.0081 2.8E-07 50.9 12.2 79 156-237 285-367 (394)
160 4gt6_A Cell surface protein; l 97.0 0.0016 5.5E-08 55.3 7.1 123 109-236 260-387 (394)
161 4h09_A Hypothetical leucine ri 96.8 0.012 4E-07 49.5 11.1 129 82-215 208-343 (379)
162 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0035 1.2E-07 47.9 6.1 83 86-168 36-135 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0059 2E-07 43.3 6.2 53 95-149 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.0 0.012 4.2E-07 41.7 5.6 50 118-169 12-65 (130)
165 3sfz_A APAF-1, apoptotic pepti 95.3 0.017 5.7E-07 56.1 5.2 41 14-54 408-452 (1249)
166 1pgv_A TMD-1, tropomodulin TMD 95.2 0.034 1.2E-06 42.3 5.8 82 87-168 66-166 (197)
167 1z6t_A APAF-1, apoptotic prote 91.3 0.16 5.5E-06 45.3 4.1 37 16-52 410-450 (591)
168 1vt4_I APAF-1 related killer D 87.7 0.3 1E-05 46.7 3.0 32 16-47 403-436 (1221)
169 2lz0_A Uncharacterized protein 39.8 19 0.00066 23.6 2.5 42 81-123 10-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=7.1e-22 Score=166.07 Aligned_cols=173 Identities=22% Similarity=0.342 Sum_probs=105.7
Q ss_pred cccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCC-Ccccchhhcc-
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSS-IYQLPVEVGQ- 157 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~-i~~lp~~i~~- 157 (259)
.+|+.++ ++++|++|++++|.+..+|..++.+++|++|++++|.+.. |..++.+++|++|++++|. +..+|..++.
T Consensus 95 ~lp~~l~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 95 QFPDQAF-RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp SCCSCGG-GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred hcChhhh-hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 4555543 4666666666666666666666666666666666666666 5566666666666666643 3355555443
Q ss_pred --------CCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCC-ccccc-c
Q 039152 158 --------LTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKD-QDTVQ-L 226 (259)
Q Consensus 158 --------l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l 226 (259)
+++|++|++++| .+..+|.. +++++|++|++++|.++.+|..++.+++|+.|++++|..... +..+. +
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred cchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 666666666664 33355543 566677777777777766666666677777777776533322 33333 7
Q ss_pred cccceeeccccchhhhhhhhhhhhcccccccC
Q 039152 227 WGIEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
++|+.|++++| .....+|..+ ..+++|++
T Consensus 253 ~~L~~L~L~~n-~~~~~~p~~~--~~l~~L~~ 281 (328)
T 4fcg_A 253 APLKRLILKDC-SNLLTLPLDI--HRLTQLEK 281 (328)
T ss_dssp CCCCEEECTTC-TTCCBCCTTG--GGCTTCCE
T ss_pred CCCCEEECCCC-Cchhhcchhh--hcCCCCCE
Confidence 77777777776 4556666543 35666654
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.5e-21 Score=164.01 Aligned_cols=174 Identities=23% Similarity=0.289 Sum_probs=143.0
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhh---------CCCCCcEEEecCCCC
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVIS---------DLKKLEILCLHGSSI 148 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~---------~l~~L~~L~l~~~~i 148 (259)
..+|.. |.++++|++|++++|.+..+|..++.+++|++|++++|.+.+ |..++ .+++|++|++++|.+
T Consensus 117 ~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l 195 (328)
T 4fcg_A 117 MELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195 (328)
T ss_dssp CCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC
T ss_pred cchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc
Confidence 467765 478999999999999999999999999999999999987655 55554 499999999999999
Q ss_pred cccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCC-CccCCCCcCCCCCCeEEeecccccC-Cccccc
Q 039152 149 YQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDA-NTLPRGGLFLEKPERIDLDANVRLK-DQDTVQ 225 (259)
Q Consensus 149 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~-~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~~~ 225 (259)
..+|..++.+++|++|++++|. +..+|.. +.+++|++|++++|.+ +.+|..++.+++|+.|++++|.... .+..+.
T Consensus 196 ~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 196 RSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp CCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred CcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence 9999999999999999999865 4456554 7889999999999876 5888888999999999999984443 354444
Q ss_pred -ccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152 226 -LWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 226 -l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
+++|+.|++++| ...+.+|+.+. .+++|+.
T Consensus 275 ~l~~L~~L~L~~n-~~~~~iP~~l~--~L~~L~~ 305 (328)
T 4fcg_A 275 RLTQLEKLDLRGC-VNLSRLPSLIA--QLPANCI 305 (328)
T ss_dssp GCTTCCEEECTTC-TTCCCCCGGGG--GSCTTCE
T ss_pred cCCCCCEEeCCCC-CchhhccHHHh--hccCceE
Confidence 999999999998 67888888654 6777654
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=1.2e-19 Score=149.25 Aligned_cols=175 Identities=23% Similarity=0.240 Sum_probs=126.2
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCC-CCC--chhhhCCCCCcEEEecCCCCccc-chh
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCI-LKD--MAVISDLKKLEILCLHGSSIYQL-PVE 154 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~-~~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~ 154 (259)
..+++..|..+++|++|++++|.+..+ |..+..+++|++|++++|. +.. +..+..+++|++|++++|.+..+ |..
T Consensus 45 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 124 (285)
T 1ozn_A 45 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhH
Confidence 456666677888888888888888755 6678888888888888886 666 46677888888888888888766 445
Q ss_pred hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCC-ccccc-cccc
Q 039152 155 VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKD-QDTVQ-LWGI 229 (259)
Q Consensus 155 i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L 229 (259)
+..+++|++|++++|. +..++.. ..+++|++|++++|.++.+|.. +..+++|+.|++++|..... +..+. +++|
T Consensus 125 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence 7788888888888743 4455543 6778888888888888777664 66788888888888744333 33333 7888
Q ss_pred ceeeccccchhhhhhhhhhhhcccccccC
Q 039152 230 EELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
+.|+++++ .+..++... +..+++|++
T Consensus 204 ~~L~l~~n--~l~~~~~~~-~~~l~~L~~ 229 (285)
T 1ozn_A 204 MTLYLFAN--NLSALPTEA-LAPLRALQY 229 (285)
T ss_dssp CEEECCSS--CCSCCCHHH-HTTCTTCCE
T ss_pred cEeeCCCC--cCCcCCHHH-cccCcccCE
Confidence 88888888 666666543 446666654
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=4.7e-19 Score=155.03 Aligned_cols=135 Identities=24% Similarity=0.317 Sum_probs=103.8
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccch-hh
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPV-EV 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~i 155 (259)
..+++..|.++++|++|++++|.+..++ ..+.++++|++|++++|.++. + ..++.+++|++|++++|.+..+|. .+
T Consensus 88 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 167 (452)
T 3zyi_A 88 QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT
T ss_pred ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH
Confidence 4555666788999999999999888654 578889999999999999888 4 457888999999999998887776 47
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDAN 215 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~ 215 (259)
..+++|+.|++++|+.+..++.. ..+++|++|++++|.++.+|. +..+++|+.|++++|
T Consensus 168 ~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGN 228 (452)
T ss_dssp TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTS
T ss_pred hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCC
Confidence 78888888888887777777764 566777777777777766654 355666666666655
No 5
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=8.6e-19 Score=145.96 Aligned_cols=146 Identities=22% Similarity=0.213 Sum_probs=71.7
Q ss_pred hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152 88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 167 (259)
..+++|++|++++|.+..++. +..+++|++|++++|.++.++.++.+++|++|++++|.+..+|. +..+++|++|+++
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLD 137 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECC
T ss_pred hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECC
Confidence 445555555555555555444 55555555555555555554445555555555555555554443 4555555555555
Q ss_pred CCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152 168 HCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL 237 (259)
Q Consensus 168 ~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (259)
+| .+..++....+++|+.|++++|.++.+|. +..+++|+.|++++|.....+....+++|+.|++++|
T Consensus 138 ~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 138 LN-QITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN 205 (308)
T ss_dssp SS-CCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS
T ss_pred CC-ccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCC
Confidence 53 22233323444555555555555544443 3445555555555543333222222455555555555
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=154.60 Aligned_cols=135 Identities=27% Similarity=0.367 Sum_probs=88.1
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccch-hh
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPV-EV 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~i 155 (259)
..++...|.++++|++|++++|.+..++ ..+.++++|++|++++|.++. + ..+..+++|++|++++|.+..+|. .+
T Consensus 77 ~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 156 (440)
T 3zyj_A 77 QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF 156 (440)
T ss_dssp CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT
T ss_pred CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh
Confidence 3455555677777777888777777544 457777777777777777777 3 357777777777777777776655 36
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDAN 215 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~ 215 (259)
..+++|++|++++|+.+..++.. .++++|++|++++|.++.+|. +..+++|+.|++++|
T Consensus 157 ~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGN 217 (440)
T ss_dssp TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTS
T ss_pred hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCC
Confidence 66777777777766666666653 455556666655555555543 244555555555544
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.8e-18 Score=141.34 Aligned_cols=157 Identities=28% Similarity=0.355 Sum_probs=114.0
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchh-hcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSS-IGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-V 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i 155 (259)
..++...|.++++|++|++++|.++.+|.. +..+++|++|++++|.++. + ..+..+++|++|++++|.+..+|.. +
T Consensus 50 ~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 129 (270)
T 2o6q_A 50 SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129 (270)
T ss_dssp SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh
Confidence 456665667788888888888888877664 4678888888888888777 3 4567788888888888888766654 6
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCccc-cc-ccccc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQDT-VQ-LWGIE 230 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~-~~-l~~L~ 230 (259)
..+++|++|++++| .+..+|.. ..+++|+.|++++|.++.+|.. +..+++|+.|++++|.....+.. +. +++|+
T Consensus 130 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 130 DSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 77888888888874 45555553 6778888888888888777654 55778888888888744444332 32 77888
Q ss_pred eeecccc
Q 039152 231 ELSLAEL 237 (259)
Q Consensus 231 ~L~l~~~ 237 (259)
.|+++++
T Consensus 209 ~L~l~~N 215 (270)
T 2o6q_A 209 MLQLQEN 215 (270)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 8888776
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=2e-19 Score=150.13 Aligned_cols=149 Identities=20% Similarity=0.185 Sum_probs=69.5
Q ss_pred hCCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhccCC-cCC
Q 039152 88 RSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVGQLT-QLR 162 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~ 162 (259)
.++++|++|++++|.+. .+|..++.+++|++|++++|.+.+ |..++.+++|++|++++|.+. .+|..++.++ +|+
T Consensus 98 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 45555555555555554 445555555555555555555553 445555555555555555555 4555555554 555
Q ss_pred EEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC-ccCCCCcCCCCCCeEEeecccccCC-cccccccccceeecccc
Q 039152 163 SLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN-TLPRGGLFLEKPERIDLDANVRLKD-QDTVQLWGIEELSLAEL 237 (259)
Q Consensus 163 ~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~ 237 (259)
+|++++|...+..|.. ..++ |+.|++++|.++ ..|..+..+++|+.|++++|..... +....+++|+.|++++|
T Consensus 178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254 (313)
T ss_dssp EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS
T ss_pred EEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC
Confidence 5555554333233322 2222 444444444332 2333334444444444444422211 11111444555555544
No 9
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.8e-19 Score=149.63 Aligned_cols=149 Identities=20% Similarity=0.174 Sum_probs=97.1
Q ss_pred CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c--hhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEE
Q 039152 89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M--AVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSL 164 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L 164 (259)
.+++|++|++++|.+..+|..+..+++|++|++++|.+.. + ..+..+++|++|++++|.+... |..+..+++|++|
T Consensus 76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 5666666666666666666666666677777777766665 2 3566677777777777766633 3446667777777
Q ss_pred ecCCCCCce-eeCCC-CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCcc-ccc-ccccceeecccc
Q 039152 165 DLRHCSNLQ-VIPLN-KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQD-TVQ-LWGIEELSLAEL 237 (259)
Q Consensus 165 ~l~~~~~~~-~lp~~-~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~-~~~-l~~L~~L~l~~~ 237 (259)
++++|.... ..|.. ..+++|++|++++|.++.+ |..+..+++|+.|++++|.....+. .+. +++|+.|++++|
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 777754333 34443 6777778888877777655 5566677778888887774443322 223 777888888877
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=2.1e-18 Score=141.06 Aligned_cols=149 Identities=30% Similarity=0.355 Sum_probs=124.6
Q ss_pred HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-hccCCcCCE
Q 039152 87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRS 163 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~ 163 (259)
+..+++|++|++++|.+..++ .++.+++|++|++++|.++. + ..++.+++|++|++++|++..+|.. ++.+++|++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 468999999999999998875 58899999999999999988 4 4578999999999999999988766 788999999
Q ss_pred EecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCcc-ccc-ccccceeecccc
Q 039152 164 LDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQD-TVQ-LWGIEELSLAEL 237 (259)
Q Consensus 164 L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~-~~~-l~~L~~L~l~~~ 237 (259)
|++++| .+..+|.. ..+++|+.|++++|.++.+|.. +..+++|+.|++++|.....+. .+. +++|+.|++++|
T Consensus 138 L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 138 LNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 999996 45566653 7889999999999999877765 4689999999999985444433 233 899999999987
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=151.45 Aligned_cols=175 Identities=21% Similarity=0.238 Sum_probs=143.6
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCC-CCcccch-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGS-SIYQLPV-E 154 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~-~i~~lp~-~ 154 (259)
..++...|.++++|++|++++|.++.+|. .+..+++|++|++++|.+.. + ..+..+++|++|++++| .+..++. .
T Consensus 101 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 180 (440)
T 3zyj_A 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180 (440)
T ss_dssp CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch
Confidence 56677788999999999999999998876 68999999999999999988 3 57889999999999984 5677766 4
Q ss_pred hccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCC-ccccc-ccccce
Q 039152 155 VGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWGIEE 231 (259)
Q Consensus 155 i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L~~ 231 (259)
+..+++|++|++++| .+..+|....+++|+.|++++|.++.+ |..+..+++|+.|++.+|..... +..+. +++|+.
T Consensus 181 ~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp TTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred hhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 889999999999985 566788778899999999999999766 66777899999999998844443 33333 899999
Q ss_pred eeccccchhhhhhhhhhhhcccccccC
Q 039152 232 LSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 232 L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
|++++| .+..++... +..+++|+.
T Consensus 260 L~L~~N--~l~~~~~~~-~~~l~~L~~ 283 (440)
T 3zyj_A 260 INLAHN--NLTLLPHDL-FTPLHHLER 283 (440)
T ss_dssp EECTTS--CCCCCCTTT-TSSCTTCCE
T ss_pred EECCCC--CCCccChhH-hccccCCCE
Confidence 999999 777777654 556777664
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=3.7e-19 Score=148.52 Aligned_cols=172 Identities=21% Similarity=0.220 Sum_probs=141.7
Q ss_pred cccHHHHhCCCCccEEEcCC-CCCC-CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhh
Q 039152 81 AIPQNLLRSMLQVRVLDLTD-MNLL-SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEV 155 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i 155 (259)
.+|.. |.++++|++|++++ |.+. .+|..++.+++|++|++++|.+.+ |..++.+++|++|++++|.+. .+|..+
T Consensus 67 ~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 67 PIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp ECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred ccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 56765 57999999999995 7777 689999999999999999999985 788999999999999999998 789999
Q ss_pred ccCCcCCEEecCCCCCceeeCCC-CCCC-CCcEEEeeccCCC-ccCCCCcCCCCCCeEEeeccccc-CCccccc-ccccc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN-KHLP-NLTSLELEVNDAN-TLPRGGLFLEKPERIDLDANVRL-KDQDTVQ-LWGIE 230 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~-~~l~-~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~-l~~L~ 230 (259)
..+++|++|++++|...+.+|.. ..++ +|+.|++++|.++ .+|..+..++ |+.|++++|... ..+..+. +++|+
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCS
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCC
Confidence 99999999999997666577766 6776 9999999999986 7888888887 999999999444 3344444 99999
Q ss_pred eeeccccchhhhhhhhhhhhcccccccC
Q 039152 231 ELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 231 ~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
.|+++++ .+...++. ...+++|++
T Consensus 225 ~L~L~~N--~l~~~~~~--~~~l~~L~~ 248 (313)
T 1ogq_A 225 KIHLAKN--SLAFDLGK--VGLSKNLNG 248 (313)
T ss_dssp EEECCSS--EECCBGGG--CCCCTTCCE
T ss_pred EEECCCC--ceeeecCc--ccccCCCCE
Confidence 9999999 45444333 235566654
No 13
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=3.1e-19 Score=143.17 Aligned_cols=172 Identities=18% Similarity=0.196 Sum_probs=142.1
Q ss_pred ccccHHHHhCCCCccEEEcCCCC-CCCCch-hhcCCCCCcEEEecC-CCCCC-c-hhhhCCCCCcEEEecCCCCcccchh
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMN-LLSLPS-SIGLLTNLHTLCLYS-CILKD-M-AVISDLKKLEILCLHGSSIYQLPVE 154 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~-~~~lp~-~i~~l~~L~~L~l~~-~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~ 154 (259)
..+|+..|.++++|++|++++|. ++.++. .+..+++|++|++++ |.++. + ..+..+++|++|++++|.++.+|.
T Consensus 44 ~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~- 122 (239)
T 2xwt_C 44 RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD- 122 (239)
T ss_dssp SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-
T ss_pred eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-
Confidence 56777778899999999999997 887765 688999999999998 89988 4 578899999999999999999887
Q ss_pred hccCCcCC---EEecCCCCCceeeCCC--CCCCCCc-EEEeeccCCCccCCCCcCCCCCCeEEeeccc-ccCCcc-ccc-
Q 039152 155 VGQLTQLR---SLDLRHCSNLQVIPLN--KHLPNLT-SLELEVNDANTLPRGGLFLEKPERIDLDANV-RLKDQD-TVQ- 225 (259)
Q Consensus 155 i~~l~~L~---~L~l~~~~~~~~lp~~--~~l~~L~-~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~~~-~~~- 225 (259)
+..+++|+ +|++++|..+..+|.. ..+++|+ .|++++|.++.+|......++|+.|++.+|. ....+. .+.
T Consensus 123 ~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~ 202 (239)
T 2xwt_C 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202 (239)
T ss_dssp CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTT
T ss_pred cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhc
Confidence 88888888 9999996477778775 7889999 9999999999999887766899999999984 333333 333
Q ss_pred c-cccceeeccccchhhhhhhhhhhhcccccccC
Q 039152 226 L-WGIEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 226 l-~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
+ ++|+.|+++++ .+..+|.. .|++|+.
T Consensus 203 l~~~L~~L~l~~N--~l~~l~~~----~~~~L~~ 230 (239)
T 2xwt_C 203 VYSGPSLLDVSQT--SVTALPSK----GLEHLKE 230 (239)
T ss_dssp CSBCCSEEECTTC--CCCCCCCT----TCTTCSE
T ss_pred cccCCcEEECCCC--ccccCChh----HhccCce
Confidence 7 89999999999 77788764 4555543
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=7.9e-19 Score=148.75 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=123.2
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC-chh-hhCCCCCcEEEecCCCCcccch--h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD-MAV-ISDLKKLEILCLHGSSIYQLPV--E 154 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~~~i~~lp~--~ 154 (259)
..+|...|.++++|++|++++|.++.+ |..++.+++|++|++++|.++. ++. ++.+++|++|++++|.+..+|. .
T Consensus 65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 144 (353)
T 2z80_A 65 TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144 (353)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCS
T ss_pred cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhh
Confidence 456666678888999999998888865 4568888889999999988888 544 7888899999999888888876 5
Q ss_pred hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCccccc--cccc
Q 039152 155 VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQDTVQ--LWGI 229 (259)
Q Consensus 155 i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~--l~~L 229 (259)
+..+++|++|++++|+.+..++.. ..+++|++|++++|.++.+ |..+..+++|++|++.+|.....+..+. +++|
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc
Confidence 788888999999887666666543 7788888999998888755 7777788888888888875444333322 7788
Q ss_pred ceeecccc
Q 039152 230 EELSLAEL 237 (259)
Q Consensus 230 ~~L~l~~~ 237 (259)
+.|+++++
T Consensus 225 ~~L~L~~n 232 (353)
T 2z80_A 225 ECLELRDT 232 (353)
T ss_dssp EEEEEESC
T ss_pred cEEECCCC
Confidence 88888777
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=2.3e-18 Score=147.83 Aligned_cols=116 Identities=20% Similarity=0.311 Sum_probs=79.4
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-V 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i 155 (259)
..+|+.+|.++++|++|++++|.+..++. .+..+++|++|++++|.+.. +..++.+++|++|++++|.+..+|.. +
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 137 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHh
Confidence 56777777778888888888887775543 67777778888887777776 34567777777777777777777766 4
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANT 196 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~ 196 (259)
..+++|++|++++|.. ..++.. ..+++|++|++++|.++.
T Consensus 138 ~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp TTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred cCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCc
Confidence 6777777777777443 333322 555666666666655543
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=3e-18 Score=141.50 Aligned_cols=171 Identities=26% Similarity=0.310 Sum_probs=141.3
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQL 158 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l 158 (259)
..+|.++ .+.+++|++++|.+..+ |..+..+++|++|++++|.++..+..+.+++|++|++++|.+..+|..+..+
T Consensus 23 ~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 99 (290)
T 1p9a_G 23 TALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL 99 (290)
T ss_dssp SSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTC
T ss_pred CcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccC
Confidence 4667654 36899999999999965 5679999999999999999998333488999999999999999999999999
Q ss_pred CcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCC-cCCCCCCeEEeecccccCCcccc-c-ccccceee
Q 039152 159 TQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGG-LFLEKPERIDLDANVRLKDQDTV-Q-LWGIEELS 233 (259)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~~~~-~-l~~L~~L~ 233 (259)
++|++|++++| .+..+|.. ..+++|++|++++|.++.+|... ..+++|+.|++++|.....+..+ . +++|+.|+
T Consensus 100 ~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 100 PALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp TTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 99999999995 55666654 88999999999999999888764 58999999999999655555443 3 99999999
Q ss_pred ccccchhhhhhhhhhhhcccccccC
Q 039152 234 LAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 234 l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
+++| .+..+|..+. .+++|++
T Consensus 179 L~~N--~l~~ip~~~~--~~~~L~~ 199 (290)
T 1p9a_G 179 LQEN--SLYTIPKGFF--GSHLLPF 199 (290)
T ss_dssp CCSS--CCCCCCTTTT--TTCCCSE
T ss_pred CCCC--cCCccChhhc--ccccCCe
Confidence 9999 7888887653 4455553
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.8e-18 Score=151.30 Aligned_cols=176 Identities=20% Similarity=0.203 Sum_probs=142.7
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecC-CCCcccchh-
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHG-SSIYQLPVE- 154 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~-~~i~~lp~~- 154 (259)
..+++..|.++++|++|++++|.++.+|. .+..+++|++|++++|.+.. + ..+..+++|++|++++ +.+..+|..
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 191 (452)
T 3zyi_A 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh
Confidence 45676778899999999999999998776 48889999999999999988 4 5788999999999998 467777764
Q ss_pred hccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCC-ccccc-ccccce
Q 039152 155 VGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWGIEE 231 (259)
Q Consensus 155 i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L~~ 231 (259)
+..+++|++|++++| .+..+|....+++|+.|++++|.++.+ |..+..+++|+.|++.+|..... +..+. +++|+.
T Consensus 192 ~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270 (452)
T ss_dssp TTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCCEEECCCC-cccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence 889999999999985 556677778899999999999999766 56677899999999998844433 33333 889999
Q ss_pred eeccccchhhhhhhhhhhhcccccccCC
Q 039152 232 LSLAELLDHIKNFVNKLVKVGSSQLKYL 259 (259)
Q Consensus 232 L~l~~~~~~~~~~~~~l~~~~l~~L~~L 259 (259)
|++++| .+..++... +..+++|+.|
T Consensus 271 L~L~~N--~l~~~~~~~-~~~l~~L~~L 295 (452)
T 3zyi_A 271 LNLAHN--NLSSLPHDL-FTPLRYLVEL 295 (452)
T ss_dssp EECCSS--CCSCCCTTS-STTCTTCCEE
T ss_pred EECCCC--cCCccChHH-hccccCCCEE
Confidence 999999 777777654 5567776643
No 18
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=1.7e-18 Score=142.95 Aligned_cols=156 Identities=23% Similarity=0.226 Sum_probs=135.0
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccch-hhcc
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPV-EVGQ 157 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~ 157 (259)
..+++..|.++++|++|++++|.++.++.. +.+++|++|++++|.++. |..+..+++|++|++++|+++.+|. .+..
T Consensus 44 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~ 122 (290)
T 1p9a_G 44 YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122 (290)
T ss_dssp SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT
T ss_pred CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcC
Confidence 456666788999999999999999987764 789999999999999998 7788999999999999999998875 5899
Q ss_pred CCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCC-cCCCCCCeEEeecccccCCccccc-ccccceee
Q 039152 158 LTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGG-LFLEKPERIDLDANVRLKDQDTVQ-LWGIEELS 233 (259)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~ 233 (259)
+++|++|++++| .+..+|.. ..+++|+.|++++|.++.+|..+ ..+++|+.|++++|.....+..+. ..+|+.++
T Consensus 123 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~ 201 (290)
T 1p9a_G 123 LGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201 (290)
T ss_dssp CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEE
T ss_pred CCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEE
Confidence 999999999995 55666665 68899999999999999998865 579999999999996666655544 88999999
Q ss_pred cccc
Q 039152 234 LAEL 237 (259)
Q Consensus 234 l~~~ 237 (259)
+.++
T Consensus 202 L~~N 205 (290)
T 1p9a_G 202 LHGN 205 (290)
T ss_dssp CCSC
T ss_pred eCCC
Confidence 9876
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=2.1e-18 Score=155.91 Aligned_cols=117 Identities=19% Similarity=0.280 Sum_probs=79.8
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-V 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i 155 (259)
..+|+.+|.++++|++|++++|.+..++ ..++.+++|++|++++|.+.. + ..++.+++|++|++++|.+..+|.. +
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 143 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 143 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh
Confidence 5677777777888888888887777554 367777778888887777777 3 4567777777777777777777766 4
Q ss_pred ccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANT 196 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~ 196 (259)
+.+++|++|++++|......|.. +.+++|++|++++|.++.
T Consensus 144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 67777777777775433333322 556666666666665543
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=5.2e-18 Score=157.62 Aligned_cols=174 Identities=24% Similarity=0.223 Sum_probs=119.8
Q ss_pred cccHHHHhCCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhc
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVG 156 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~ 156 (259)
.+|.. |..+++|++|++++|.+. .+|..++.+++|++|++++|.+.+ |..++.+++|++|++++|.+. .+|..++
T Consensus 457 ~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 457 EIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred cCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 44444 456777777777777776 567777777777777777777775 667777777777777777776 6677777
Q ss_pred cCCcCCEEecCCCCCceeeCCC----------------------------------------------------------
Q 039152 157 QLTQLRSLDLRHCSNLQVIPLN---------------------------------------------------------- 178 (259)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~---------------------------------------------------------- 178 (259)
.+++|+.|++++|...+.+|..
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence 7777777777776544344421
Q ss_pred -------------CCCCCCcEEEeeccCCC-ccCCCCcCCCCCCeEEeeccc-ccCCccccc-ccccceeeccccchhhh
Q 039152 179 -------------KHLPNLTSLELEVNDAN-TLPRGGLFLEKPERIDLDANV-RLKDQDTVQ-LWGIEELSLAELLDHIK 242 (259)
Q Consensus 179 -------------~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~~-l~~L~~L~l~~~~~~~~ 242 (259)
+.+++|+.|++++|.++ .+|..++.+++|+.|++++|. ....|..+. +++|+.|++++| ....
T Consensus 616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N-~l~g 694 (768)
T 3rgz_A 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDG 694 (768)
T ss_dssp TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCEE
T ss_pred ccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC-cccC
Confidence 23466778888888874 777777888888888888773 334455555 788888888888 4445
Q ss_pred hhhhhhhhcccccccC
Q 039152 243 NFVNKLVKVGSSQLKY 258 (259)
Q Consensus 243 ~~~~~l~~~~l~~L~~ 258 (259)
.+|..+. .++.|++
T Consensus 695 ~ip~~l~--~l~~L~~ 708 (768)
T 3rgz_A 695 RIPQAMS--ALTMLTE 708 (768)
T ss_dssp CCCGGGG--GCCCCSE
T ss_pred cCChHHh--CCCCCCE
Confidence 6666433 5666554
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.2e-17 Score=136.43 Aligned_cols=172 Identities=30% Similarity=0.374 Sum_probs=131.4
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-ch-hhhCCCCCcEEEecCCCCcccchh-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-MA-VISDLKKLEILCLHGSSIYQLPVE-V 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~-~~~~l~~L~~L~l~~~~i~~lp~~-i 155 (259)
..+|..+ .++++.|++++|.+..+|. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+..+|.. +
T Consensus 29 ~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 105 (270)
T 2o6q_A 29 TAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF 105 (270)
T ss_dssp SSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc
Confidence 4556543 3578899999998887765 68889999999999998888 43 457889999999999998887765 6
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCcc-ccc-ccccc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQD-TVQ-LWGIE 230 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~-~~~-l~~L~ 230 (259)
..+++|++|++++| .+..++.. ..+++|++|++++|.++.+|.. +..+++|+.|++++|.....+. .+. +++|+
T Consensus 106 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 106 DQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184 (270)
T ss_dssp TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence 78899999999885 44555543 6888999999999998888765 5688999999999885544433 233 88999
Q ss_pred eeeccccchhhhhhhhhhhhcccccccC
Q 039152 231 ELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 231 ~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
.|++++| .+..++... +..+++|++
T Consensus 185 ~L~L~~N--~l~~~~~~~-~~~l~~L~~ 209 (270)
T 2o6q_A 185 TLKLDNN--QLKRVPEGA-FDSLEKLKM 209 (270)
T ss_dssp EEECCSS--CCSCCCTTT-TTTCTTCCE
T ss_pred EEECCCC--cCCcCCHHH-hccccCCCE
Confidence 9999988 677777653 446666664
No 22
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2.3e-18 Score=134.15 Aligned_cols=148 Identities=19% Similarity=0.234 Sum_probs=126.1
Q ss_pred hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcc-cchhhccCCcCCEEec
Q 039152 88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQ-LPVEVGQLTQLRSLDL 166 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l 166 (259)
..+++|+.|++++|.+..+| .+..+++|++|++++|.+..++.++.+++|++|++++|.+.. .|..+..+++|++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 45678999999999999888 689999999999999988777789999999999999999984 6778999999999999
Q ss_pred CCCCCceeeCCC-CCCCCCcEEEeeccC-CCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152 167 RHCSNLQVIPLN-KHLPNLTSLELEVND-ANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL 237 (259)
Q Consensus 167 ~~~~~~~~lp~~-~~l~~L~~L~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (259)
++|......|.. ..+++|++|++++|. ++.+| .+..+++|+.|++++|.....+....+++|+.|+++++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCc
Confidence 997654433433 789999999999998 88887 56899999999999996555554444999999999988
No 23
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=4.3e-18 Score=141.69 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=137.7
Q ss_pred hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152 88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 167 (259)
..+++|+.|+++++.+..+| .+..+++|++|++++|.+...+.+..+++|++|++++|.+..+| .+..+++|++|+++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 46779999999999999887 58999999999999999999333999999999999999999886 68999999999999
Q ss_pred CCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhhh
Q 039152 168 HCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNK 247 (259)
Q Consensus 168 ~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 247 (259)
+|. +..++....+++|+.|++++|.++.+|. +..+++|+.|++++|.....+....+++|+.|++++| .+..++.
T Consensus 116 ~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n--~l~~~~~- 190 (308)
T 1h6u_A 116 STQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN--KISDISP- 190 (308)
T ss_dssp TSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS--CCCCCGG-
T ss_pred CCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCC--ccCcChh-
Confidence 964 5556656899999999999999998876 6899999999999995555544444999999999999 7777765
Q ss_pred hhhcccccccCC
Q 039152 248 LVKVGSSQLKYL 259 (259)
Q Consensus 248 l~~~~l~~L~~L 259 (259)
...+++|++|
T Consensus 191 --l~~l~~L~~L 200 (308)
T 1h6u_A 191 --LASLPNLIEV 200 (308)
T ss_dssp --GGGCTTCCEE
T ss_pred --hcCCCCCCEE
Confidence 3466766653
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=8.5e-18 Score=144.24 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=35.1
Q ss_pred CCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCccccc-ccccceeeccccchhhhhhhhh
Q 039152 180 HLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAELLDHIKNFVNK 247 (259)
Q Consensus 180 ~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~ 247 (259)
.+++|+.|++++|.++.+ |..+..+++|+.|++++|.....+.... +++|+.|++++| .+..+|..
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~ 313 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN--HLLHVERN 313 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS--CCCCCGGG
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC--cceecCcc
Confidence 345566666666666533 4445566666666666653333322222 556666666666 44455543
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=5.4e-19 Score=160.92 Aligned_cols=163 Identities=16% Similarity=0.200 Sum_probs=126.2
Q ss_pred cccHHHHhCCCCccEEEcCCCCCCC------------------Cchhhc--CCCCCcEEEecCCCCCC--chhhhCCCCC
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLLS------------------LPSSIG--LLTNLHTLCLYSCILKD--MAVISDLKKL 138 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~~~~--~~~~~~l~~L 138 (259)
.+|.. |.++++|++|++++|.++. +|..++ ++++|++|++++|.+.+ |..++.+++|
T Consensus 197 ~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 37776 5789999999999999887 888888 89999999999998776 7788899999
Q ss_pred cEEEecCCC-Cc--ccchhhccC------CcCCEEecCCCCCceeeCC--C-CCCCCCcEEEeeccCCC-ccCCCCcCCC
Q 039152 139 EILCLHGSS-IY--QLPVEVGQL------TQLRSLDLRHCSNLQVIPL--N-KHLPNLTSLELEVNDAN-TLPRGGLFLE 205 (259)
Q Consensus 139 ~~L~l~~~~-i~--~lp~~i~~l------~~L~~L~l~~~~~~~~lp~--~-~~l~~L~~L~l~~~~~~-~~p~~~~~l~ 205 (259)
++|++++|+ ++ .+|..++.+ ++|++|++++|... .+|. . +++++|++|++++|.++ .+| .++.++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 999999987 77 488888776 88888888885544 7777 3 78888888888888886 777 667777
Q ss_pred CCCeEEeecccccCCccccc-ccc-cceeeccccchhhhhhhhhh
Q 039152 206 KPERIDLDANVRLKDQDTVQ-LWG-IEELSLAELLDHIKNFVNKL 248 (259)
Q Consensus 206 ~L~~L~l~~~~~~~~~~~~~-l~~-L~~L~l~~~~~~~~~~~~~l 248 (259)
+|+.|++++|.....+..+. +++ |+.|++++| .+..+|..+
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N--~l~~lp~~~ 396 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHN--KLKYIPNIF 396 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEECCSS--CCSSCCSCC
T ss_pred CCCEEECCCCccccccHhhhhhcccCcEEEccCC--cCcccchhh
Confidence 78888877774444444443 666 777777777 455666543
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=6.5e-18 Score=152.78 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=40.5
Q ss_pred CCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCccccc-ccccceeeccccchhhhhhhhhhhhccccccc
Q 039152 180 HLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLK 257 (259)
Q Consensus 180 ~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~ 257 (259)
.+++|+.|++++|.++.+ |..++.+++|+.|++++|.....+..+. +++|+.|++++| .+..+|..+. .+++|+
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~--~l~~L~ 327 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN--HLLHVERNQP--QFDRLE 327 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS--CCCCCGGGHH--HHTTCS
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC--CCCccCcccc--cCCCCC
Confidence 445666666666666533 4455566666666666663333333333 566666666666 4445554432 444444
No 27
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=4.7e-18 Score=140.39 Aligned_cols=147 Identities=27% Similarity=0.263 Sum_probs=122.5
Q ss_pred HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152 87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL 166 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 166 (259)
+..+++|++|++++|.++.++. ++.+++|++|++++|.++.++.++.+++|++|++++|++..++ .+..+++|++|++
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l 141 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYL 141 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEEC
T ss_pred HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEc
Confidence 5678999999999999988877 8889999999999999888667889999999999999988774 6888999999999
Q ss_pred CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152 167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL 237 (259)
Q Consensus 167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (259)
++| .+..++....+++|+.|++++|.++.++. +..+++|+.|++++|.....+....+++|+.|+++++
T Consensus 142 ~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 142 GNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred cCC-cCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 985 44455544788999999999999987766 6889999999999885555454444899999999988
No 28
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=1.8e-17 Score=136.29 Aligned_cols=157 Identities=25% Similarity=0.296 Sum_probs=133.5
Q ss_pred ccccHHHHhCCCCccEEEcCCCC-CCCC-chhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMN-LLSL-PSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE- 154 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~-~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~- 154 (259)
..+++..|.++++|++|++++|. +..+ |..+..+++|++|++++|.+.. +..+..+++|++|++++|.+..+|..
T Consensus 69 ~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence 45555567899999999999997 8876 6679999999999999999988 56788999999999999999988765
Q ss_pred hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCccc-cc-cccc
Q 039152 155 VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQDT-VQ-LWGI 229 (259)
Q Consensus 155 i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~-~~-l~~L 229 (259)
+..+++|++|++++| .+..+|.. ..+++|+.|++++|.++.+ |..+..+++|+.|++++|.....+.. +. +++|
T Consensus 149 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred hccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 889999999999995 55666654 7899999999999999765 77888999999999999955554432 33 9999
Q ss_pred ceeecccc
Q 039152 230 EELSLAEL 237 (259)
Q Consensus 230 ~~L~l~~~ 237 (259)
+.|+++++
T Consensus 228 ~~L~l~~N 235 (285)
T 1ozn_A 228 QYLRLNDN 235 (285)
T ss_dssp CEEECCSS
T ss_pred CEEeccCC
Confidence 99999987
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.5e-18 Score=162.14 Aligned_cols=160 Identities=17% Similarity=0.197 Sum_probs=102.9
Q ss_pred ccHHHHhCCCCccEEEcCCCCCCC------------------Cchhhc--CCCCCcEEEecCCCCCC--chhhhCCCCCc
Q 039152 82 IPQNLLRSMLQVRVLDLTDMNLLS------------------LPSSIG--LLTNLHTLCLYSCILKD--MAVISDLKKLE 139 (259)
Q Consensus 82 l~~~~~~~l~~L~~L~l~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~~~~--~~~~~~l~~L~ 139 (259)
+|.. |.++++|++|++++|.++. +|..++ ++++|++|++++|.+.+ |..++.+++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 6665 4677777777777777776 677666 77777777777777655 66677777777
Q ss_pred EEEecCCC-Cc--ccchhhccCC-------cCCEEecCCCCCceeeCC--C-CCCCCCcEEEeeccCCCccCCCCcCCCC
Q 039152 140 ILCLHGSS-IY--QLPVEVGQLT-------QLRSLDLRHCSNLQVIPL--N-KHLPNLTSLELEVNDANTLPRGGLFLEK 206 (259)
Q Consensus 140 ~L~l~~~~-i~--~lp~~i~~l~-------~L~~L~l~~~~~~~~lp~--~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~ 206 (259)
+|++++|+ +. .+|..++.++ +|++|++++|... .+|. . +++++|+.|++++|.++.+| .++.+++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCc
Confidence 77777776 65 3666666555 6777777764433 6666 2 66666667777666666666 5566666
Q ss_pred CCeEEeecccccCCccccc-ccc-cceeeccccchhhhhhhh
Q 039152 207 PERIDLDANVRLKDQDTVQ-LWG-IEELSLAELLDHIKNFVN 246 (259)
Q Consensus 207 L~~L~l~~~~~~~~~~~~~-l~~-L~~L~l~~~~~~~~~~~~ 246 (259)
|+.|++++|.....+..+. +++ |+.|++++| .+..+|.
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N--~L~~lp~ 636 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN--KLKYIPN 636 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSS--CCCSCCS
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCC--CCCcCch
Confidence 6666666664334443333 555 666666666 3445554
No 30
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=1.4e-18 Score=142.20 Aligned_cols=114 Identities=24% Similarity=0.346 Sum_probs=50.8
Q ss_pred cHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccch-hhccC
Q 039152 83 PQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPV-EVGQL 158 (259)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l 158 (259)
+...|.++++|++|++++|.+..++. .+..+++|++|++++|.++. +..+..+++|++|++++|.+..++. .++.+
T Consensus 44 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 123 (276)
T 2z62_A 44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123 (276)
T ss_dssp CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccC
Confidence 33334445555555555554443322 34445555555555555444 2334444555555555544444333 24444
Q ss_pred CcCCEEecCCCCCce-eeCCC-CCCCCCcEEEeeccCCCc
Q 039152 159 TQLRSLDLRHCSNLQ-VIPLN-KHLPNLTSLELEVNDANT 196 (259)
Q Consensus 159 ~~L~~L~l~~~~~~~-~lp~~-~~l~~L~~L~l~~~~~~~ 196 (259)
++|++|++++|.... .+|.. ..+++|++|++++|.++.
T Consensus 124 ~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 445555554432211 12222 344444444444444443
No 31
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.2e-18 Score=145.30 Aligned_cols=171 Identities=14% Similarity=0.116 Sum_probs=109.0
Q ss_pred cccHHHH-hCCCCccEEEcCCCCCCCCchhhcCC-----CCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcc--
Q 039152 81 AIPQNLL-RSMLQVRVLDLTDMNLLSLPSSIGLL-----TNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQ-- 150 (259)
Q Consensus 81 ~l~~~~~-~~l~~L~~L~l~~~~~~~lp~~i~~l-----~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~-- 150 (259)
.+|..+| ..+++|++|++++|.++.+|..++.+ ++|++|++++|.+.. +..++.+++|++|++++|++..
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence 4555443 56777777777777777666666655 677777777777766 3567777777777777776542
Q ss_pred -cchhh--ccCCcCCEEecCCCCCceeeCCC-----CCCCCCcEEEeeccCCCccC--CCCcCCCCCCeEEeecccccCC
Q 039152 151 -LPVEV--GQLTQLRSLDLRHCSNLQVIPLN-----KHLPNLTSLELEVNDANTLP--RGGLFLEKPERIDLDANVRLKD 220 (259)
Q Consensus 151 -lp~~i--~~l~~L~~L~l~~~~~~~~lp~~-----~~l~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~ 220 (259)
+|..+ +.+++|++|++++|. +..++.. ..+++|++|++++|.++..+ ..+..+++|+.|++++|.....
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred HHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 34444 667777777777743 3322211 45677778888777776543 2334567788888877754454
Q ss_pred cccccccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152 221 QDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 221 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
+..+. ++|+.|++++| .+..+|. ...+++|++
T Consensus 269 p~~~~-~~L~~L~Ls~N--~l~~~p~---~~~l~~L~~ 300 (312)
T 1wwl_A 269 PKGLP-AKLSVLDLSYN--RLDRNPS---PDELPQVGN 300 (312)
T ss_dssp CSSCC-SEEEEEECCSS--CCCSCCC---TTTSCEEEE
T ss_pred hhhcc-CCceEEECCCC--CCCCChh---HhhCCCCCE
Confidence 54444 77788888777 6666654 335666654
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=1.8e-17 Score=139.87 Aligned_cols=163 Identities=19% Similarity=0.250 Sum_probs=86.2
Q ss_pred hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152 88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 167 (259)
..+++|++|++++|.++.+|. +..+++|++|++++|.++..+.+..+++|++|++++|.+..+|. +..+++|++|+++
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLG 140 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECT
T ss_pred hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECC
Confidence 455555566665555555544 55555555555555555554445555555555555555555544 5555555555555
Q ss_pred CCCCceeeCCCCC----------------------CCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccc
Q 039152 168 HCSNLQVIPLNKH----------------------LPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ 225 (259)
Q Consensus 168 ~~~~~~~lp~~~~----------------------l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~ 225 (259)
+|......+.... +++|+.|++++|.++.++. +..+++|+.|++.+|.....+....
T Consensus 141 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 219 (347)
T 4fmz_A 141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVAN 219 (347)
T ss_dssp TCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGG
T ss_pred CCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhc
Confidence 5444443333344 4455555555555444443 3445555555555543333222223
Q ss_pred ccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152 226 LWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 226 l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
+++|+.|++++| .+..++. ...+++|++
T Consensus 220 ~~~L~~L~l~~n--~l~~~~~---~~~l~~L~~ 247 (347)
T 4fmz_A 220 MTRLNSLKIGNN--KITDLSP---LANLSQLTW 247 (347)
T ss_dssp CTTCCEEECCSS--CCCCCGG---GTTCTTCCE
T ss_pred CCcCCEEEccCC--ccCCCcc---hhcCCCCCE
Confidence 667777777777 5555554 335555554
No 33
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=2.1e-17 Score=133.52 Aligned_cols=154 Identities=25% Similarity=0.309 Sum_probs=129.6
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-V 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i 155 (259)
..+|..+ .+.++.|++++|.+..++. .++.+++|++|++++|.++. +..+..+++|++|++++|.+..+|.. +
T Consensus 27 ~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 103 (251)
T 3m19_A 27 DSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF 103 (251)
T ss_dssp SSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHh
Confidence 4566654 3689999999999997654 68999999999999999998 45689999999999999999988765 7
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCC-CCcCCCCCCeEEeecccccCCcc-ccc-ccccc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPR-GGLFLEKPERIDLDANVRLKDQD-TVQ-LWGIE 230 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~-~~~-l~~L~ 230 (259)
..+++|++|++++| .+..+|.. ..+++|+.|++++|.++.+|. .+..+++|+.|++++|.....+. .+. +++|+
T Consensus 104 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 104 DHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 89999999999995 55666664 789999999999999998887 47789999999999995555433 333 89999
Q ss_pred eeecccc
Q 039152 231 ELSLAEL 237 (259)
Q Consensus 231 ~L~l~~~ 237 (259)
.|++++|
T Consensus 183 ~L~l~~N 189 (251)
T 3m19_A 183 TITLFGN 189 (251)
T ss_dssp EEECCSC
T ss_pred EEEeeCC
Confidence 9999988
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=144.06 Aligned_cols=173 Identities=20% Similarity=0.194 Sum_probs=142.2
Q ss_pred cccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-
Q 039152 79 FFAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE- 154 (259)
Q Consensus 79 l~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~- 154 (259)
+..+|.+++ ++|++|++++|.++.+|. .+.++++|++|++++|.++. +..++.+++|++|++++|.+..+|..
T Consensus 43 l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 119 (353)
T 2z80_A 43 LNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119 (353)
T ss_dssp CSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred ccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence 356777653 589999999999998766 79999999999999999998 46799999999999999999999887
Q ss_pred hccCCcCCEEecCCCCCceeeCC-C--CCCCCCcEEEeeccC-CCcc-CCCCcCCCCCCeEEeecccccCC-ccccc-cc
Q 039152 155 VGQLTQLRSLDLRHCSNLQVIPL-N--KHLPNLTSLELEVND-ANTL-PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LW 227 (259)
Q Consensus 155 i~~l~~L~~L~l~~~~~~~~lp~-~--~~l~~L~~L~l~~~~-~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~ 227 (259)
++.+++|++|++++| .+..+|. . ..+++|++|++++|. ++.+ |..+..+++|+.|++++|..... +..+. ++
T Consensus 120 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 120 FKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp HTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred hCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence 889999999999995 5567776 2 789999999999994 7766 45678999999999999844433 44444 89
Q ss_pred ccceeeccccchhhhhhhhhhhhcccccccC
Q 039152 228 GIEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
+|+.|+++++ .+..++... ...+++|+.
T Consensus 199 ~L~~L~l~~n--~l~~~~~~~-~~~~~~L~~ 226 (353)
T 2z80_A 199 NVSHLILHMK--QHILLLEIF-VDVTSSVEC 226 (353)
T ss_dssp EEEEEEEECS--CSTTHHHHH-HHHTTTEEE
T ss_pred cCCeecCCCC--ccccchhhh-hhhcccccE
Confidence 9999999999 677777654 445666654
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.74 E-value=1.6e-17 Score=154.30 Aligned_cols=169 Identities=22% Similarity=0.167 Sum_probs=106.9
Q ss_pred HhCCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhccCCcCC
Q 039152 87 LRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVGQLTQLR 162 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~ 162 (259)
|.++++|++|++++|.+. .+|..+..+++|++|++++|.+.+ |..++.+++|++|++++|++. .+|..++.+++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 456666666666666666 456666666667777777776664 566666777777777777666 5666677777777
Q ss_pred EEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC-ccCCC----------------------------------------
Q 039152 163 SLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN-TLPRG---------------------------------------- 200 (259)
Q Consensus 163 ~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~-~~p~~---------------------------------------- 200 (259)
+|++++|...+.+|.. +.+++|+.|++++|.++ .+|..
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 7777776555566654 66677777777776653 44432
Q ss_pred ------------------------------CcCCCCCCeEEeecc-cccCCccccc-ccccceeeccccchhhhhhhhhh
Q 039152 201 ------------------------------GLFLEKPERIDLDAN-VRLKDQDTVQ-LWGIEELSLAELLDHIKNFVNKL 248 (259)
Q Consensus 201 ------------------------------~~~l~~L~~L~l~~~-~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~l 248 (259)
++.+++|+.|++++| .....|..+. +++|+.|++++| .....+|..+
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l 676 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEV 676 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGG
T ss_pred cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHH
Confidence 223456667777766 3334454444 777888888877 4445666654
Q ss_pred hhcccccccC
Q 039152 249 VKVGSSQLKY 258 (259)
Q Consensus 249 ~~~~l~~L~~ 258 (259)
. .+++|+.
T Consensus 677 ~--~L~~L~~ 684 (768)
T 3rgz_A 677 G--DLRGLNI 684 (768)
T ss_dssp G--GCTTCCE
T ss_pred h--CCCCCCE
Confidence 3 6666654
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=5.3e-17 Score=132.70 Aligned_cols=154 Identities=31% Similarity=0.300 Sum_probs=119.0
Q ss_pred HhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-hccCCcCC
Q 039152 87 LRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLR 162 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~ 162 (259)
+..+++|++|++++|.++.++. .++.+++|++|++++|.++. + ..++.+++|++|++++|.+..+|.. ++.+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 5788899999999998887665 46888999999999999888 4 4478889999999999988877765 67889999
Q ss_pred EEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCcccccccccceeeccccch
Q 039152 163 SLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLD 239 (259)
Q Consensus 163 ~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~ 239 (259)
+|++++|. +..++.. ..+++|+.|++++|.++.+|.. +..+++|+.|++.+|.... .+++|+.|++..+ .
T Consensus 161 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----~~~~l~~l~~~~n-~ 233 (272)
T 3rfs_A 161 ELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----TCPGIRYLSEWIN-K 233 (272)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-----CTTTTHHHHHHHH-H
T ss_pred EEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-----cCcHHHHHHHHHH-h
Confidence 99999864 4455553 6788999999999998777654 5688999999998873221 2556777777766 4
Q ss_pred hhhhhhhh
Q 039152 240 HIKNFVNK 247 (259)
Q Consensus 240 ~~~~~~~~ 247 (259)
....+|..
T Consensus 234 ~~g~ip~~ 241 (272)
T 3rfs_A 234 HSGVVRNS 241 (272)
T ss_dssp TGGGBBCT
T ss_pred CCCcccCc
Confidence 45555554
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=6e-18 Score=140.46 Aligned_cols=176 Identities=19% Similarity=0.096 Sum_probs=103.2
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCC---chhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccch--
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSL---PSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPV-- 153 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~-- 153 (259)
..+|.++|.++++|++|++++|.+..+ |..+..+++|++|++++|.+.. +..+..+++|++|++++|.+..++.
T Consensus 41 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~ 120 (306)
T 2z66_A 41 QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120 (306)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTT
T ss_pred CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccch
Confidence 455666566666777777766666533 4555566667777777666666 5556666677777777666665543
Q ss_pred hhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeecccccCC-ccccc-ccc
Q 039152 154 EVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWG 228 (259)
Q Consensus 154 ~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~ 228 (259)
.+..+++|++|++++|......+.. ..+++|++|++++|.++. +|..+..+++|+.|++++|..... +..+. +++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence 4666666777777664433333322 556666777776666643 566666666777777766633322 22222 666
Q ss_pred cceeeccccchhhhhhhhhhhhcccccccC
Q 039152 229 IEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 229 L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
|+.|++++| .+..++... +..+++|++
T Consensus 201 L~~L~L~~N--~l~~~~~~~-~~~l~~L~~ 227 (306)
T 2z66_A 201 LQVLNMSHN--NFFSLDTFP-YKCLNSLQV 227 (306)
T ss_dssp CCEEECTTS--CCSBCCSGG-GTTCTTCCE
T ss_pred CCEEECCCC--ccCccChhh-ccCcccCCE
Confidence 667777666 444444322 334444443
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=1.6e-17 Score=139.35 Aligned_cols=173 Identities=17% Similarity=0.219 Sum_probs=103.5
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC-c----------------------hhhhCC
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD-M----------------------AVISDL 135 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~----------------------~~~~~l 135 (259)
..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.++. | ..+..+
T Consensus 65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 144 (330)
T 1xku_A 65 TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 144 (330)
T ss_dssp CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTC
T ss_pred CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCC
Confidence 344444456666666666666666644 5556666666666666665544 2 234455
Q ss_pred CCCcEEEecCCCCc---ccchhhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEE
Q 039152 136 KKLEILCLHGSSIY---QLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTL-PRGGLFLEKPERID 211 (259)
Q Consensus 136 ~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~ 211 (259)
++|++|++++|.+. ..+..+..+++|++|++++| .+..+|.. -.++|+.|++++|.++.+ |..+..+++|+.|+
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEE
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcc-ccccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 55555555555543 22334555566666666553 33444442 336777777777777655 45566788888888
Q ss_pred eecccccCCc-ccc-cccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152 212 LDANVRLKDQ-DTV-QLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 212 l~~~~~~~~~-~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
+++|.....+ ..+ .+++|+.|++++| .+..+|..+ ..+++|++
T Consensus 223 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l--~~l~~L~~ 267 (330)
T 1xku_A 223 LSFNSISAVDNGSLANTPHLRELHLNNN--KLVKVPGGL--ADHKYIQV 267 (330)
T ss_dssp CCSSCCCEECTTTGGGSTTCCEEECCSS--CCSSCCTTT--TTCSSCCE
T ss_pred CCCCcCceeChhhccCCCCCCEEECCCC--cCccCChhh--ccCCCcCE
Confidence 8887443332 223 3788888888888 666777654 36666664
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.73 E-value=1.2e-17 Score=149.16 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=102.4
Q ss_pred cccHHHHhCCCCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcc--cchhh
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQ--LPVEV 155 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~--lp~~i 155 (259)
.+++..|.++++|++|++++|.+..++ ..++.+++|++|++++|.+.+ + ..++.+++|++|++++|.+.. .|..+
T Consensus 40 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 40 YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh
Confidence 344444567777777777777776543 456777777777777777766 3 347777777777777777663 35566
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCC-ccCCCCcCCCCCCeEEeecccccCCccccc--ccccc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDAN-TLPRGGLFLEKPERIDLDANVRLKDQDTVQ--LWGIE 230 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~--l~~L~ 230 (259)
+++++|++|++++|...+.+|.. .++++|++|++++|.++ ..|..++.+++|+.|++..+.....+..+. +++|+
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBS
T ss_pred hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhccccc
Confidence 77777777777776556666543 66777777777777765 356666677777777777664433332221 67777
Q ss_pred eeecccc
Q 039152 231 ELSLAEL 237 (259)
Q Consensus 231 ~L~l~~~ 237 (259)
.|+++++
T Consensus 200 ~L~L~~n 206 (549)
T 2z81_A 200 YLELRDT 206 (549)
T ss_dssp EEEEESC
T ss_pred EEEccCC
Confidence 7777777
No 40
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.9e-17 Score=135.63 Aligned_cols=126 Identities=24% Similarity=0.247 Sum_probs=76.5
Q ss_pred HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152 87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL 166 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 166 (259)
+.++++|++|++++|.++.+|. +..+++|++|++++|.+...+.+..+++|++|++++|.+..+ ..+..+++|++|++
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSL 163 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEEC
T ss_pred cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEc
Confidence 4566666666666666665544 566666666666666666655566666666666666666655 34666666666666
Q ss_pred CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeeccc
Q 039152 167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANV 216 (259)
Q Consensus 167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~ 216 (259)
++|. +..++....+++|+.|++++|.++.+|. +..+++|+.|++++|.
T Consensus 164 ~~N~-l~~~~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 164 EDNQ-ISDIVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSSC-CCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred cCCc-cccchhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 6643 3333334566666666666666666553 4566666666666663
No 41
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=8.7e-17 Score=129.83 Aligned_cols=138 Identities=30% Similarity=0.359 Sum_probs=118.8
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-V 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i 155 (259)
..+++..|.++++|++|++++|.+..++. .+..+++|++|++++|.++. + ..+..+++|++|++++|.+..+|.. +
T Consensus 48 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 127 (251)
T 3m19_A 48 ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHh
Confidence 45666667899999999999999997654 58899999999999999998 4 5678999999999999999988876 6
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCC-CCcCCCCCCeEEeeccccc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPR-GGLFLEKPERIDLDANVRL 218 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~ 218 (259)
..+++|++|++++| .+..+|.. ..+++|++|++++|.++.+|. .+..+++|+.|++.+|...
T Consensus 128 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 128 DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 88999999999995 55666663 789999999999999988776 5678999999999998443
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=3.2e-17 Score=137.51 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=129.3
Q ss_pred cccHHHHhCCCCccEEEcCCCCCCCCch----------------------hhcCCCCCcEEEecCCCCCC----chhhhC
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLLSLPS----------------------SIGLLTNLHTLCLYSCILKD----MAVISD 134 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~----------------------~i~~l~~L~~L~l~~~~~~~----~~~~~~ 134 (259)
.+++..|.++++|++|++++|.++.+|. .+..+++|++|++++|.+.. +..+..
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 90 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp CBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred eeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 4444446677777777777776654442 36778899999999999863 577899
Q ss_pred CCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeC-CC-CCCCCCcEEEeeccCCCccCC-CCcCCCCCCeEE
Q 039152 135 LKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIP-LN-KHLPNLTSLELEVNDANTLPR-GGLFLEKPERID 211 (259)
Q Consensus 135 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~-~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~ 211 (259)
+++|++|++++|.+..+|..+. ++|++|++++|. +..++ .. ..+++|+.|++++|.++.++. .+..+++|+.|+
T Consensus 170 l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246 (330)
T ss_dssp CTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred CCCcCEEECCCCccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEE
Confidence 9999999999999999988765 899999999965 44443 33 889999999999999987765 677999999999
Q ss_pred eecccccCCccccc-ccccceeeccccchhhhhhhhh
Q 039152 212 LDANVRLKDQDTVQ-LWGIEELSLAELLDHIKNFVNK 247 (259)
Q Consensus 212 l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~ 247 (259)
+++|.....+..+. +++|+.|++++| .+..++..
T Consensus 247 L~~N~l~~lp~~l~~l~~L~~L~l~~N--~i~~~~~~ 281 (330)
T 1xku_A 247 LNNNKLVKVPGGLADHKYIQVVYLHNN--NISAIGSN 281 (330)
T ss_dssp CCSSCCSSCCTTTTTCSSCCEEECCSS--CCCCCCTT
T ss_pred CCCCcCccCChhhccCCCcCEEECCCC--cCCccChh
Confidence 99996666655554 999999999999 77777754
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.73 E-value=4e-17 Score=143.61 Aligned_cols=119 Identities=25% Similarity=0.281 Sum_probs=73.5
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCccc-chhh
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQL-PVEV 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~l-p~~i 155 (259)
..+++..|.++++|++|++++|.+..+ |..+.++++|++|++++|.++. + ..++.+++|++|++++|.+..+ |..+
T Consensus 45 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 124 (477)
T 2id5_A 45 KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124 (477)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc
Confidence 345555566777777777777777654 5567777777777777777766 3 3456677777777777776644 3446
Q ss_pred ccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccC
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLP 198 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p 198 (259)
..+++|++|++++|......+.. ..+++|+.|++++|.++.+|
T Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 66777777777764333222222 45555555555555554443
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.72 E-value=3.5e-17 Score=142.97 Aligned_cols=90 Identities=27% Similarity=0.425 Sum_probs=62.6
Q ss_pred cccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC--chh--hhCCCCCcEEEecCCCCccc-chh
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD--MAV--ISDLKKLEILCLHGSSIYQL-PVE 154 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~i~~l-p~~ 154 (259)
.+++..|.++++|++|++++|.+..+ |..++++++|++|++++|.+++ +.. ++.+++|++|++++|.+..+ |..
T Consensus 69 ~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (455)
T 3v47_A 69 VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred eECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc
Confidence 55566677778888888888777743 6667777777777777777776 333 67777777777777777655 444
Q ss_pred -hccCCcCCEEecCCCC
Q 039152 155 -VGQLTQLRSLDLRHCS 170 (259)
Q Consensus 155 -i~~l~~L~~L~l~~~~ 170 (259)
+..+++|++|++++|.
T Consensus 149 ~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 149 FFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp GGGGCTTCCEEECTTCC
T ss_pred ccCCCCcccEEeCCCCc
Confidence 6667777777776643
No 45
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.1e-17 Score=156.24 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=109.4
Q ss_pred ccHHH-HhCCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCC-CCC---chhhhCCC-------CCcEEEecCCCC
Q 039152 82 IPQNL-LRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCI-LKD---MAVISDLK-------KLEILCLHGSSI 148 (259)
Q Consensus 82 l~~~~-~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~-~~~---~~~~~~l~-------~L~~L~l~~~~i 148 (259)
+|+.+ |.++++|++|++++|.+. .+|..++++++|++|++++|. +++ |..++.++ +|++|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 77765 458899999999988766 688888899999999999987 764 55566554 899999999888
Q ss_pred cccch--hhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCC-CCeEEeecccccCCc
Q 039152 149 YQLPV--EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEK-PERIDLDANVRLKDQ 221 (259)
Q Consensus 149 ~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~~ 221 (259)
..+|. .++++++|+.|++++|.. ..+|..+.+++|+.|++++|.++.+|..+..+++ |+.|++++|.....+
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKV-RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCC-CBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred CccCChhhhhcCCCCCEEECCCCCc-ccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc
Confidence 88888 788888999999988554 4777547888888888888888888887788887 888888877433333
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=6.3e-17 Score=146.32 Aligned_cols=136 Identities=28% Similarity=0.339 Sum_probs=90.5
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchh-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVE-V 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~-i 155 (259)
..+++..|.++++|++|++++|.++.+|..+..+++|++|++++|.+.. +..++.+++|++|++++|.+. .+|.. +
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 4566666778888888888888888888878888888888888888776 456777777777777777665 55544 6
Q ss_pred ccCCcCCEEecCCCCCceee--CCC-CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecc
Q 039152 156 GQLTQLRSLDLRHCSNLQVI--PLN-KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDAN 215 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~l--p~~-~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~ 215 (259)
..+++|++|++++|...... +.. ..+++|++|++++|.++.+ |..+..+++|+.|++++|
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 66777777777765443332 222 5566666666666665433 344445556666666555
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.72 E-value=6.1e-17 Score=142.41 Aligned_cols=83 Identities=20% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCccc-chhhccCCcC
Q 039152 86 LLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQL-PVEVGQLTQL 161 (259)
Q Consensus 86 ~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L 161 (259)
.|.++++|++|++++|.+..+|. .+.++++|++|++++|.+.. +..+..+++|++|++++|.+..+ |..+..+++|
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence 34555555555555555554443 23445555555555555444 23344444444444444444433 2223444444
Q ss_pred CEEecCC
Q 039152 162 RSLDLRH 168 (259)
Q Consensus 162 ~~L~l~~ 168 (259)
++|++++
T Consensus 155 ~~L~l~~ 161 (477)
T 2id5_A 155 EQLTLEK 161 (477)
T ss_dssp CEEEEES
T ss_pred CEEECCC
Confidence 4444443
No 48
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=4e-17 Score=132.84 Aligned_cols=146 Identities=25% Similarity=0.252 Sum_probs=99.5
Q ss_pred HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152 87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL 166 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 166 (259)
+..+++|++|++++|.+..+| .++.+++|++|++++|.+++.+.++.+++|++|++++|+++.+|.... ++|++|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence 356677777777777777766 477777777777777777772227777777777777777776665333 77777777
Q ss_pred CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152 167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL 237 (259)
Q Consensus 167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (259)
++| .+..++....+++|+.|++++|.++.+| .+..+++|+.|++++|..........+++|+.|+++++
T Consensus 114 ~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 114 DNN-ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CSS-CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEE
T ss_pred cCC-ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCC
Confidence 774 4444554467777777777777777665 45677777777777774444333333777777777776
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=9.5e-18 Score=140.14 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=88.3
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-----------------------------
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M----------------------------- 129 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~----------------------------- 129 (259)
..+++..|.++++|++|++++|.+...++ +..+++|++|++++|.+++ +
T Consensus 47 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L 125 (317)
T 3o53_A 47 SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNI 125 (317)
T ss_dssp CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEE
T ss_pred CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEE
Confidence 45666677899999999999998886555 7788888888888776543 1
Q ss_pred ------------hhhhCCCCCcEEEecCCCCcccc-hhh-ccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCC
Q 039152 130 ------------AVISDLKKLEILCLHGSSIYQLP-VEV-GQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDAN 195 (259)
Q Consensus 130 ------------~~~~~l~~L~~L~l~~~~i~~lp-~~i-~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~ 195 (259)
..++.+++|++|++++|.+..++ ..+ ..+++|++|++++| .+..++....+++|+.|++++|.++
T Consensus 126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLA 204 (317)
T ss_dssp ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccccccccCCEEECCCCcCC
Confidence 12333444444444444444322 222 23444555555442 2333333344555666666666555
Q ss_pred ccCCCCcCCCCCCeEEeecccccCCccccc-ccccceeecccc
Q 039152 196 TLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAEL 237 (259)
Q Consensus 196 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~ 237 (259)
.+|..+..+++|+.|++++|.....+..+. +++|+.|++++|
T Consensus 205 ~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence 555555555666666666553333333232 556666666655
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=7e-17 Score=144.32 Aligned_cols=153 Identities=18% Similarity=0.273 Sum_probs=107.0
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCC-Cc---hhhcCCCCCcEEEecCCCCCC-c---hhhhCCCCCcEEEecCCCCccc
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLS-LP---SSIGLLTNLHTLCLYSCILKD-M---AVISDLKKLEILCLHGSSIYQL 151 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~-lp---~~i~~l~~L~~L~l~~~~~~~-~---~~~~~l~~L~~L~l~~~~i~~l 151 (259)
..+|..+|.++++|++|++++|.+.. +| ..++.+++|++|++++|.++. + ..++.+++|++|++++|+++.+
T Consensus 323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 402 (549)
T 2z81_A 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402 (549)
T ss_dssp CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC
T ss_pred ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC
Confidence 45788887789999999999998884 33 236788999999999999988 3 3588899999999999999999
Q ss_pred chhhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccce
Q 039152 152 PVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEE 231 (259)
Q Consensus 152 p~~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~ 231 (259)
|..++.+++|++|++++|. +..+|.. -.++|++|++++|.++.++ ..+++|++|++++|.....+....+++|+.
T Consensus 403 p~~~~~~~~L~~L~Ls~N~-l~~l~~~-~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~ 477 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSSTG-IRVVKTC-IPQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDASLFPVLLV 477 (549)
T ss_dssp CSCCCCCTTCCEEECTTSC-CSCCCTT-SCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCGGGCTTCCE
T ss_pred ChhhcccccccEEECCCCC-cccccch-hcCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCCcccCccCCE
Confidence 9888889999999999854 4555542 2245555555555555443 235555555555553333333333555555
Q ss_pred eecccc
Q 039152 232 LSLAEL 237 (259)
Q Consensus 232 L~l~~~ 237 (259)
|++++|
T Consensus 478 L~Ls~N 483 (549)
T 2z81_A 478 MKISRN 483 (549)
T ss_dssp EECCSS
T ss_pred EecCCC
Confidence 555555
No 51
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=2.6e-17 Score=131.95 Aligned_cols=174 Identities=17% Similarity=0.166 Sum_probs=139.9
Q ss_pred cccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCC-CCC-c-hhhhCCCCCcEEEecC-CCCcccch
Q 039152 79 FFAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCI-LKD-M-AVISDLKKLEILCLHG-SSIYQLPV 153 (259)
Q Consensus 79 l~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~-~~~-~-~~~~~l~~L~~L~l~~-~~i~~lp~ 153 (259)
+..+|. + .+++++|++++|.++.+|. .+..+++|++|++++|. ++. + ..+..+++|++|++++ |.++.+|.
T Consensus 23 l~~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 445666 2 3489999999999998766 78899999999999997 877 4 5789999999999998 99998875
Q ss_pred -hhccCCcCCEEecCCCCCceeeCCCCCCCCCc---EEEeecc-CCCccCCC-CcCCCCCC-eEEeecccccCCccc-cc
Q 039152 154 -EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLT---SLELEVN-DANTLPRG-GLFLEKPE-RIDLDANVRLKDQDT-VQ 225 (259)
Q Consensus 154 -~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~---~L~l~~~-~~~~~p~~-~~~l~~L~-~L~l~~~~~~~~~~~-~~ 225 (259)
.+..+++|++|++++|. +..+|....+++|+ +|++++| .++.+|.. +..+++|+ .|++++|.....+.. +.
T Consensus 99 ~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp TSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 48899999999999954 55677667778887 9999999 89988765 67899999 999998854444433 33
Q ss_pred ccccceeeccccchhhhhhhhhhhhccc-ccccCC
Q 039152 226 LWGIEELSLAELLDHIKNFVNKLVKVGS-SQLKYL 259 (259)
Q Consensus 226 l~~L~~L~l~~~~~~~~~~~~~l~~~~l-~~L~~L 259 (259)
.++|+.|+++++ ..+..++... +.++ ++|+.|
T Consensus 178 ~~~L~~L~L~~n-~~l~~i~~~~-~~~l~~~L~~L 210 (239)
T 2xwt_C 178 GTKLDAVYLNKN-KYLTVIDKDA-FGGVYSGPSLL 210 (239)
T ss_dssp TCEEEEEECTTC-TTCCEECTTT-TTTCSBCCSEE
T ss_pred CCCCCEEEcCCC-CCcccCCHHH-hhccccCCcEE
Confidence 679999999999 4377777654 5566 777653
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=6.1e-17 Score=135.98 Aligned_cols=171 Identities=17% Similarity=0.201 Sum_probs=91.4
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchh-hc
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVE-VG 156 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~ 156 (259)
..+++..|.++++|++|++++|.++.+ |..++.+++|++|++++|.++. |..+. ++|++|++++|.+..+|.. +.
T Consensus 67 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~ 144 (332)
T 2ft3_A 67 SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFS 144 (332)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGS
T ss_pred CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhC
Confidence 345554556777777777777777654 5566777777777777776665 43333 5666666666666655543 55
Q ss_pred cCCcCCEEecCCCCCc------------------------eeeCCCCCCCCCcEEEeeccCCCccC-CCCcCCCCCCeEE
Q 039152 157 QLTQLRSLDLRHCSNL------------------------QVIPLNKHLPNLTSLELEVNDANTLP-RGGLFLEKPERID 211 (259)
Q Consensus 157 ~l~~L~~L~l~~~~~~------------------------~~lp~~~~l~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~ 211 (259)
.+++|++|++++|... ..+|. .-.++|+.|++++|.++.++ ..+..+++|+.|+
T Consensus 145 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~-~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 223 (332)
T 2ft3_A 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223 (332)
T ss_dssp SCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCS-SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCB
T ss_pred CCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCc-cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 6666666666654321 11111 11134555555555554333 3344555566666
Q ss_pred eecccccCCcc-ccc-ccccceeeccccchhhhhhhhhhhhccccccc
Q 039152 212 LDANVRLKDQD-TVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLK 257 (259)
Q Consensus 212 l~~~~~~~~~~-~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~ 257 (259)
+++|.....+. .+. +++|+.|++++| .+..+|..+ ..+++|+
T Consensus 224 L~~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l--~~l~~L~ 267 (332)
T 2ft3_A 224 LGHNQIRMIENGSLSFLPTLRELHLDNN--KLSRVPAGL--PDLKLLQ 267 (332)
T ss_dssp CCSSCCCCCCTTGGGGCTTCCEEECCSS--CCCBCCTTG--GGCTTCC
T ss_pred CCCCcCCcCChhHhhCCCCCCEEECCCC--cCeecChhh--hcCccCC
Confidence 65553332221 222 555666666555 444555432 2444444
No 53
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=3.6e-17 Score=147.65 Aligned_cols=153 Identities=26% Similarity=0.241 Sum_probs=130.6
Q ss_pred HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152 87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL 166 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 166 (259)
+..+++|+.|++++|.+..++. +..+++|++|++++|.+..++.++.+++|++|++++|.+..+| .+..+++|+.|++
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 138 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYL 138 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEEC
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEEC
Confidence 5789999999999999998877 8999999999999999998778999999999999999999874 5889999999999
Q ss_pred CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhh
Q 039152 167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFV 245 (259)
Q Consensus 167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 245 (259)
++|. +..++....+++|+.|++++|.++.++. +..+++|+.|++++|.....+....+++|+.|++++| .+...|
T Consensus 139 s~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N--~l~~~p 213 (605)
T 1m9s_A 139 GNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ--ECLNKP 213 (605)
T ss_dssp CSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE--EEECCC
T ss_pred CCCc-cCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC--cCcCCc
Confidence 9964 4555545899999999999999987766 7899999999999995555444444999999999998 444443
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=2.2e-17 Score=137.87 Aligned_cols=175 Identities=22% Similarity=0.194 Sum_probs=126.7
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCccc-------
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQL------- 151 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l------- 151 (259)
...+..++..+++|++|++++|.++.++ ..+..+++|++|++++|.+.+...+..+++|++|++++|.+..+
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~ 102 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIE 102 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCC
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcC
Confidence 4455666777788999999999888654 57888899999999998887722377778888777777755432
Q ss_pred ----------------------------------chhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCC
Q 039152 152 ----------------------------------PVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDAN 195 (259)
Q Consensus 152 ----------------------------------p~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~ 195 (259)
|..++.+++|++|++++|......+.. ..+++|++|++++|.++
T Consensus 103 ~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 103 TLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp EEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred EEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 224667788888888886544433332 46788999999999888
Q ss_pred ccCCCCcCCCCCCeEEeecccccCCccccc-ccccceeeccccchhhhhhhhhhhhcccccccCC
Q 039152 196 TLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL 259 (259)
Q Consensus 196 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~L 259 (259)
.+|.. ..+++|+.|++++|.....+..+. +++|+.|++++| .+..+|..+ ..+++|++|
T Consensus 183 ~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N--~l~~l~~~~--~~l~~L~~L 242 (317)
T 3o53_A 183 DVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN--KLVLIEKAL--RFSQNLEHF 242 (317)
T ss_dssp EEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS--CCCEECTTC--CCCTTCCEE
T ss_pred ccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCC--cccchhhHh--hcCCCCCEE
Confidence 87665 458889999999885544433343 888999999988 677777643 366666643
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=3.3e-17 Score=137.65 Aligned_cols=170 Identities=20% Similarity=0.239 Sum_probs=123.0
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchhhc
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVEVG 156 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~i~ 156 (259)
..+|..+ .+++++|++++|.+..+ |..++++++|++|++++|.++. +..++.+++|++|++++|.+..+|..+.
T Consensus 46 ~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 122 (332)
T 2ft3_A 46 KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP 122 (332)
T ss_dssp SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC
T ss_pred cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc
Confidence 4567654 36899999999999976 4579999999999999999998 5789999999999999999999998776
Q ss_pred cCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCC---ccCCCCcCC--------------------CCCCeEE
Q 039152 157 QLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDAN---TLPRGGLFL--------------------EKPERID 211 (259)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~---~~p~~~~~l--------------------~~L~~L~ 211 (259)
++|++|++++| .+..+|.. .++++|+.|++++|.++ ..|..+..+ ++|+.|+
T Consensus 123 --~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~ 199 (332)
T 2ft3_A 123 --SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH 199 (332)
T ss_dssp --TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCB
T ss_pred --ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEE
Confidence 89999999995 45566654 78899999999998875 334444444 2444444
Q ss_pred eecccccCCc-cccc-ccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152 212 LDANVRLKDQ-DTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 212 l~~~~~~~~~-~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
+++|.....+ ..+. +++|+.|++++| .+..++... +..+++|+.
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N--~l~~~~~~~-~~~l~~L~~ 245 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHN--QIRMIENGS-LSFLPTLRE 245 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSS--CCCCCCTTG-GGGCTTCCE
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCC--cCCcCChhH-hhCCCCCCE
Confidence 4444222221 2222 677777777777 555555432 345666654
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=5.6e-17 Score=132.67 Aligned_cols=172 Identities=25% Similarity=0.266 Sum_probs=134.9
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccc-hhh
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLP-VEV 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp-~~i 155 (259)
..+|..+ .+++++|++++|.++.++. .+..+++|++|++++|.+.. +..+..+++|++|++++|.+..++ ..+
T Consensus 20 ~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 20 YKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp SSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred cccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 4556643 3579999999999997665 78999999999999999988 357899999999999999999776 558
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeecccccCCc-ccc------
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDANVRLKDQ-DTV------ 224 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~-~~~------ 224 (259)
..+++|++|++++|. +..++.. +.+++|++|++++|.++. +|..+..+++|+.|++++|.....+ ..+
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 999999999999954 4455542 889999999999999975 6888899999999999987332221 111
Q ss_pred ----------------------cccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152 225 ----------------------QLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 225 ----------------------~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
...+|+.|++++| .+..+|... +..+++|++
T Consensus 176 ~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~-~~~l~~L~~ 228 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN--QLKSVPDGI-FDRLTSLQK 228 (276)
T ss_dssp TTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS--CCSCCCTTT-TTTCCSCCE
T ss_pred cccceeeecCCCcccccCccccCCCcccEEECCCC--ceeecCHhH-hcccccccE
Confidence 1336777888887 566776654 456777664
No 57
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=2.8e-16 Score=125.24 Aligned_cols=135 Identities=27% Similarity=0.325 Sum_probs=106.9
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-V 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i 155 (259)
..+|.++ .++|++|++++|.+..+ |..+..+++|++|++++|.+.. + ..+..+++|++|++++|.++.+|.. +
T Consensus 32 ~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 108 (229)
T 3e6j_A 32 ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108 (229)
T ss_dssp SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHh
Confidence 5666643 37888999999988865 5678888899999999998887 4 4567888999999999988888765 6
Q ss_pred ccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeeccccc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRL 218 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~ 218 (259)
..+++|++|++++| .+..+|.. ..+++|++|++++|.++.+|.. +..+++|+.|++.+|...
T Consensus 109 ~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 109 DRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 78889999999884 55677765 7888899999999988877754 567888999998888433
No 58
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=1.5e-17 Score=151.37 Aligned_cols=133 Identities=16% Similarity=0.225 Sum_probs=96.0
Q ss_pred ccHHHHh--CCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCCC-CCC---chhhhCC------CCCcEEEecCCCC
Q 039152 82 IPQNLLR--SMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSCI-LKD---MAVISDL------KKLEILCLHGSSI 148 (259)
Q Consensus 82 l~~~~~~--~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~-~~~---~~~~~~l------~~L~~L~l~~~~i 148 (259)
+|+.+ . ++++|++|++++|.+. .+|..++++++|++|++++|. +++ |..++.+ ++|++|++++|.+
T Consensus 239 ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred Cchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 66654 4 7888888888888766 678888888888888888887 763 5666665 8888888888888
Q ss_pred cccch--hhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCC-CCeEEeecc
Q 039152 149 YQLPV--EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEK-PERIDLDAN 215 (259)
Q Consensus 149 ~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~-L~~L~l~~~ 215 (259)
..+|. .++.+++|++|++++|...+.+|..+.+++|+.|++++|.++.+|..+..+++ |+.|++++|
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC
Confidence 88887 78888888888888866554777335555666666666665555555555555 666666555
No 59
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.1e-16 Score=144.49 Aligned_cols=129 Identities=24% Similarity=0.277 Sum_probs=94.3
Q ss_pred HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152 87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL 166 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 166 (259)
+..+++|+.|++++|.+..+| .+..+++|++|++++|.+..++.+..+++|+.|++++|.+..+ ..+..+++|+.|++
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSL 160 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEEC
T ss_pred hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEEC
Confidence 567788888888888777766 4777788888888888877766677788888888888877766 45777788888888
Q ss_pred CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccC
Q 039152 167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLK 219 (259)
Q Consensus 167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 219 (259)
++|......| ...+++|+.|++++|.++.+|. +..+++|+.|++++|....
T Consensus 161 s~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 161 EDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCSEEEEC
T ss_pred cCCcCCCchh-hccCCCCCEEECcCCCCCCChH-HccCCCCCEEEccCCcCcC
Confidence 7754433333 4677788888888887777653 5777888888888774443
No 60
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=2.1e-16 Score=123.91 Aligned_cols=159 Identities=30% Similarity=0.295 Sum_probs=128.0
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-V 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i 155 (259)
..+|.++ .+++++|++++|.++.++. .+..+++|++|++++|.++. + ..+..+++|++|++++|.+..+|.. +
T Consensus 20 ~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 20 TSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 3455543 4689999999999997766 47899999999999999998 4 4578899999999999999988776 6
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCccccccccccee
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQDTVQLWGIEEL 232 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 232 (259)
..+++|++|++++| .+..++.. ..+++|++|++++|.++.+|.. +..+++|+.|++.+|... ..+++|+.|
T Consensus 97 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----~~~~~l~~L 170 (208)
T 2o6s_A 97 DKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----CTCPGIRYL 170 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----CCTTTTHHH
T ss_pred cCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----cCCCCHHHH
Confidence 89999999999985 45566654 7899999999999999888775 568999999999988322 125678888
Q ss_pred eccccchhhhhhhhhh
Q 039152 233 SLAELLDHIKNFVNKL 248 (259)
Q Consensus 233 ~l~~~~~~~~~~~~~l 248 (259)
++..+ .....+|+++
T Consensus 171 ~~~~n-~~~g~ip~~~ 185 (208)
T 2o6s_A 171 SEWIN-KHSGVVRNSA 185 (208)
T ss_dssp HHHHH-HCTTTBBCTT
T ss_pred HHHHH-hCCceeeccC
Confidence 88777 5556666543
No 61
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.70 E-value=8.4e-17 Score=140.57 Aligned_cols=119 Identities=22% Similarity=0.162 Sum_probs=64.0
Q ss_pred CCcEEEecCCCCcc-cchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEee
Q 039152 137 KLEILCLHGSSIYQ-LPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLD 213 (259)
Q Consensus 137 ~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~ 213 (259)
+|++|++++|.+.. .|..++.+++|++|++++|......|.. ..+++|++|++++|.++.+ |..+..+++|+.|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 34444444444442 2344566666666666664433332322 5666666666666666544 3445566666777666
Q ss_pred cccccCC-ccccc-ccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152 214 ANVRLKD-QDTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 214 ~~~~~~~-~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
+|..... +..+. +++|+.|++++| .+..+|... +..+++|++
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~-~~~l~~L~~ 399 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTN--QLKSVPDGI-FDRLTSLQK 399 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS--CCSCCCTTT-TTTCTTCCE
T ss_pred CCcccccChhhccccccccEEECCCC--ccccCCHhH-hccCCcccE
Confidence 6633322 22222 666777777666 555555543 345555554
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=5.6e-17 Score=143.19 Aligned_cols=123 Identities=14% Similarity=0.034 Sum_probs=79.9
Q ss_pred CCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcc-cchhhc-cCCcCCEEecCCCCCceeeCCCCCCCCCcEEEe
Q 039152 114 TNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQ-LPVEVG-QLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLEL 189 (259)
Q Consensus 114 ~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~-lp~~i~-~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l 189 (259)
++|++|++++|.+++ +..++.+++|++|++++|.+.. .|..+. .+++|++|++++|. +..+|....+++|+.|++
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L 198 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDL 198 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEEC
Confidence 444555555555555 3456667777777777777664 344454 56777777777743 444454456777777777
Q ss_pred eccCCCccCCCCcCCCCCCeEEeecccccCCccccc-ccccceeecccc
Q 039152 190 EVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQ-LWGIEELSLAEL 237 (259)
Q Consensus 190 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~ 237 (259)
++|.++.+|..+..+++|+.|++++|.....+..+. +++|+.|++++|
T Consensus 199 s~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred CCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCC
Confidence 777777777777777778888877774444444343 677777888777
No 63
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.69 E-value=4e-16 Score=131.57 Aligned_cols=81 Identities=21% Similarity=0.188 Sum_probs=35.0
Q ss_pred hccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeec
Q 039152 155 VGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSL 234 (259)
Q Consensus 155 i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 234 (259)
+..+++|++|++++|. +..++....+++|++|++++|.++.++ .+..+++|+.|++++|.....+....+++|+.|++
T Consensus 217 ~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL 294 (347)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEEC
Confidence 3444444444444432 222222244455555555555544442 23445555555555542222222222445555555
Q ss_pred ccc
Q 039152 235 AEL 237 (259)
Q Consensus 235 ~~~ 237 (259)
++|
T Consensus 295 ~~n 297 (347)
T 4fmz_A 295 NNN 297 (347)
T ss_dssp CSS
T ss_pred cCC
Confidence 555
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=6.3e-17 Score=146.30 Aligned_cols=171 Identities=18% Similarity=0.092 Sum_probs=131.8
Q ss_pred cHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--c-hhhhCCCCCcEEEecCCCCcc-cchhhccC
Q 039152 83 PQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--M-AVISDLKKLEILCLHGSSIYQ-LPVEVGQL 158 (259)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~-~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l 158 (259)
|.. +..+++|++|++++|.+..+|..+..+++|++|++++|.+.. + ..+..+++|++|++++|.+.. .|..+..+
T Consensus 369 ~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 447 (606)
T 3vq2_A 369 SYS-DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447 (606)
T ss_dssp CHH-HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred hhh-hccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence 444 578888999999888888888778888899999999988877 3 478888999999999998874 56668888
Q ss_pred CcCCEEecCCCCCce-eeCCC-CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCC-ccccc-ccccceee
Q 039152 159 TQLRSLDLRHCSNLQ-VIPLN-KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWGIEELS 233 (259)
Q Consensus 159 ~~L~~L~l~~~~~~~-~lp~~-~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L~~L~ 233 (259)
++|++|++++|...+ ..|.. +.+++|+.|++++|.++.+ |..+..+++|+.|++++|..... +..+. +++|+.|+
T Consensus 448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 999999998876554 35554 7888999999999988755 55677889999999998854444 44444 88899999
Q ss_pred ccccchhhhhhhhhhhhcccc-cccC
Q 039152 234 LAELLDHIKNFVNKLVKVGSS-QLKY 258 (259)
Q Consensus 234 l~~~~~~~~~~~~~l~~~~l~-~L~~ 258 (259)
+++| .+..+|..+ ..++ +|++
T Consensus 528 l~~N--~l~~~p~~~--~~l~~~L~~ 549 (606)
T 3vq2_A 528 CSFN--RIETSKGIL--QHFPKSLAF 549 (606)
T ss_dssp CTTS--CCCCEESCG--GGSCTTCCE
T ss_pred CCCC--cCcccCHhH--hhhcccCcE
Confidence 9988 677787753 3554 4554
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=2.4e-16 Score=138.04 Aligned_cols=156 Identities=22% Similarity=0.176 Sum_probs=99.0
Q ss_pred HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152 87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL 166 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 166 (259)
|..+++|++|++++|.++.+| ++.+++|++|++++|.+++.+ ++.+++|++|++++|.+..+| ++.+++|++|++
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNC 134 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEEC
Confidence 456777777777777776664 666777777777777766632 666777777777777776664 667777777777
Q ss_pred CCCCCceeeCCCCCCCCCcEEEeeccC-CCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhh
Q 039152 167 RHCSNLQVIPLNKHLPNLTSLELEVND-ANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFV 245 (259)
Q Consensus 167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 245 (259)
++|. +..++ .+.+++|+.|++++|. ++.+ .++.+++|+.|++++|.....+ ...+++|+.|++++| .+..++
T Consensus 135 ~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N--~l~~~~ 207 (457)
T 3bz5_A 135 ARNT-LTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTN--NITKLD 207 (457)
T ss_dssp TTSC-CSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSS--CCSCCC
T ss_pred CCCc-cceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCC--cCCeec
Confidence 7643 33344 2567777777777773 4444 2456777777777776433333 223777777777777 454442
Q ss_pred hhhhhcccccccC
Q 039152 246 NKLVKVGSSQLKY 258 (259)
Q Consensus 246 ~~l~~~~l~~L~~ 258 (259)
...+++|++
T Consensus 208 ----l~~l~~L~~ 216 (457)
T 3bz5_A 208 ----LNQNIQLTF 216 (457)
T ss_dssp ----CTTCTTCSE
T ss_pred ----cccCCCCCE
Confidence 335555554
No 66
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4e-17 Score=132.83 Aligned_cols=161 Identities=17% Similarity=0.137 Sum_probs=134.7
Q ss_pred CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCC
Q 039152 89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRH 168 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~ 168 (259)
.+..+..++++.+.++.++ .+..+++|++|++++|.++..+.++.+++|++|++++|.+..+|. +..+++|++|++++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 4556778889999999887 588999999999999999985589999999999999999999887 99999999999999
Q ss_pred CCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhhhh
Q 039152 169 CSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKL 248 (259)
Q Consensus 169 ~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l 248 (259)
| .+..+|.... ++|+.|++++|.++.+| .+..+++|+.|++++|.....+....+++|+.|++++| .+..+ ..
T Consensus 95 N-~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N--~i~~~-~~- 167 (263)
T 1xeu_A 95 N-RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN--EITNT-GG- 167 (263)
T ss_dssp S-CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTS--CCCBC-TT-
T ss_pred C-ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCC--cCcch-HH-
Confidence 5 5666776544 99999999999999886 46899999999999996555554444999999999999 66666 22
Q ss_pred hhcccccccCC
Q 039152 249 VKVGSSQLKYL 259 (259)
Q Consensus 249 ~~~~l~~L~~L 259 (259)
...+++|++|
T Consensus 168 -l~~l~~L~~L 177 (263)
T 1xeu_A 168 -LTRLKKVNWI 177 (263)
T ss_dssp -STTCCCCCEE
T ss_pred -hccCCCCCEE
Confidence 4467777653
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=8.1e-17 Score=142.16 Aligned_cols=173 Identities=20% Similarity=0.152 Sum_probs=123.7
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chh-----------------hhCCCCCcEE
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAV-----------------ISDLKKLEIL 141 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~-----------------~~~l~~L~~L 141 (259)
..+++..|.++++|++|++++|.++..++ ++.+++|++|++++|.+++ ++. ...+++|++|
T Consensus 47 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L 125 (487)
T 3oja_A 47 SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNI 125 (487)
T ss_dssp CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEE
T ss_pred CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEE
Confidence 45566667888888888888888875554 7778888888887776554 110 1234567777
Q ss_pred EecCCCCccc-chhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeeccccc
Q 039152 142 CLHGSSIYQL-PVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRL 218 (259)
Q Consensus 142 ~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 218 (259)
++++|.+..+ |..++.+++|++|++++|......|.. ..+++|+.|++++|.++.+|.. ..+++|+.|++++|...
T Consensus 126 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp ECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEECCCCCCC
Confidence 7777777755 445788888888888886655555544 3688999999999998877665 46889999999988554
Q ss_pred CCccccc-ccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152 219 KDQDTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 219 ~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
..+..+. +++|+.|++++| .+..+|..+ ..+++|+.
T Consensus 205 ~~~~~~~~l~~L~~L~Ls~N--~l~~lp~~l--~~l~~L~~ 241 (487)
T 3oja_A 205 FMGPEFQSAAGVTWISLRNN--KLVLIEKAL--RFSQNLEH 241 (487)
T ss_dssp EECGGGGGGTTCSEEECTTS--CCCEECTTC--CCCTTCCE
T ss_pred CCCHhHcCCCCccEEEecCC--cCcccchhh--ccCCCCCE
Confidence 4444343 889999999998 666777653 35666654
No 68
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.68 E-value=5.3e-17 Score=146.79 Aligned_cols=168 Identities=17% Similarity=0.024 Sum_probs=125.7
Q ss_pred hCCCCccEEEcCCCCCCCC---chhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccch--hhccCCcC
Q 039152 88 RSMLQVRVLDLTDMNLLSL---PSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPV--EVGQLTQL 161 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L 161 (259)
..+++|++|++++|.+... |..+..+++|++|++++|.+.. +..+..+++|++|++++|.+..++. .+..+++|
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 4667777777777777643 6677888888888888888777 6778888888888888888775543 57888888
Q ss_pred CEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeecccccCC-ccccc-ccccceeeccc
Q 039152 162 RSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWGIEELSLAE 236 (259)
Q Consensus 162 ~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L~~L~l~~ 236 (259)
++|++++|......|.. ..+++|++|++++|.++. +|..+..+++|+.|++++|..... +..+. +++|+.|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 88888887655555554 788899999999998864 688888899999999998844433 33333 89999999999
Q ss_pred cchhhhhh-hhhhhhcccccccCC
Q 039152 237 LLDHIKNF-VNKLVKVGSSQLKYL 259 (259)
Q Consensus 237 ~~~~~~~~-~~~l~~~~l~~L~~L 259 (259)
| .+..+ |.. +..+++|+.|
T Consensus 507 N--~l~~~~~~~--~~~l~~L~~L 526 (606)
T 3vq2_A 507 N--NLLFLDSSH--YNQLYSLSTL 526 (606)
T ss_dssp S--CCSCEEGGG--TTTCTTCCEE
T ss_pred C--cCCCcCHHH--ccCCCcCCEE
Confidence 9 55555 443 4467777653
No 69
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2e-16 Score=123.09 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=117.2
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCc-ccchhhc
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIY-QLPVEVG 156 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~ 156 (259)
..+| + +..+++|++|++++|.+..++ .++.+++|++|++++|.++. +..++.+++|++|++++|.+. ..|..++
T Consensus 57 ~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~ 133 (197)
T 4ezg_A 57 TDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133 (197)
T ss_dssp SCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHT
T ss_pred cChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHh
Confidence 3455 3 578999999999999887665 58899999999999999987 788999999999999999998 4677899
Q ss_pred cCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccc
Q 039152 157 QLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVR 217 (259)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 217 (259)
.+++|++|++++|..+..+|....+++|+.|++++|.++.++ .+..+++|+.|++++|..
T Consensus 134 ~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 134 TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp TCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred hCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 999999999999775777776688999999999999999887 668999999999998853
No 70
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=8.5e-16 Score=121.65 Aligned_cols=135 Identities=23% Similarity=0.303 Sum_probs=110.9
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-V 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i 155 (259)
..+|..+ .++++.|++++|.++.+|. .+..+++|++|++++|.++. +..+..+++|++|++++|.++.+|.. +
T Consensus 24 ~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f 100 (220)
T 2v9t_B 24 TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100 (220)
T ss_dssp SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHc
Confidence 4566654 3688999999999997665 68889999999999999988 57889999999999999999988877 6
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeeccccc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRL 218 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~ 218 (259)
..+++|++|++++|. +..++.. ..+++|++|++++|.++.+|.. +..+++|+.|++.+|...
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 789999999999854 4555433 7889999999999999877764 668899999999988433
No 71
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.67 E-value=3.5e-16 Score=141.45 Aligned_cols=157 Identities=19% Similarity=0.240 Sum_probs=128.9
Q ss_pred cccHHHHhCCC--CccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCccc-chhh
Q 039152 81 AIPQNLLRSML--QVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQL-PVEV 155 (259)
Q Consensus 81 ~l~~~~~~~l~--~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l-p~~i 155 (259)
.+++..|.++. .|+.|++++|.+..++. .++.+++|++|++++|.++. |..++.+++|++|++++|.+..+ |..+
T Consensus 242 ~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh
Confidence 34455555554 79999999999997765 58999999999999999999 88899999999999999999976 5579
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCcc---CCCCcCCCCCCeEEeecccccCC-ccccc-ccc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTL---PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWG 228 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~---p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~ 228 (259)
..+++|++|++++|.....+|.. ..+++|++|++++|.++.+ |..+..+++|+.|++++|..... +..+. +++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 99999999999998766677664 7899999999999999755 67788999999999999843333 22332 777
Q ss_pred cceeecccc
Q 039152 229 IEELSLAEL 237 (259)
Q Consensus 229 L~~L~l~~~ 237 (259)
|+.|++++|
T Consensus 402 L~~L~l~~n 410 (606)
T 3t6q_A 402 LELLDLAFT 410 (606)
T ss_dssp CSEEECTTC
T ss_pred CCeEECCCC
Confidence 777777777
No 72
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=3.8e-16 Score=123.67 Aligned_cols=141 Identities=24% Similarity=0.250 Sum_probs=109.4
Q ss_pred cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEEecCCCC
Q 039152 94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCS 170 (259)
Q Consensus 94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~ 170 (259)
+.++.+++.++.+|..+. .+++.|++++|.++. + ..+..+++|++|++++|.+..+ |..+..+++|++|++++ +
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-N 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-S
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-C
Confidence 567888888888887664 678888998888887 3 4788888899999988888866 56688888899999888 4
Q ss_pred CceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCcc-ccc-ccccceeecccc
Q 039152 171 NLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQD-TVQ-LWGIEELSLAEL 237 (259)
Q Consensus 171 ~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~-~~~-l~~L~~L~l~~~ 237 (259)
.+..+|.. ..+++|++|++++|.++.+ |..+..+++|+.|++++|.....+. .+. +++|+.|+++++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 55666664 6788889999988888766 4556788888999988885544433 233 888888888876
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=3.5e-17 Score=136.23 Aligned_cols=147 Identities=19% Similarity=0.179 Sum_probs=72.2
Q ss_pred CCCCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC----c--hhhhCCCCCcEEEecCCCCcccchh----hcc
Q 039152 89 SMLQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD----M--AVISDLKKLEILCLHGSSIYQLPVE----VGQ 157 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~----~--~~~~~l~~L~~L~l~~~~i~~lp~~----i~~ 157 (259)
.+++|++|++++|.+..++ ..++.+++|++|++++|.+.+ + ..++.+++|++|++++|+++.+|.. +..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 4555555555555555433 345555555555555555432 1 1123455555555555555544331 344
Q ss_pred CCcCCEEecCCCCCceeeCCC-CC---CCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceee
Q 039152 158 LTQLRSLDLRHCSNLQVIPLN-KH---LPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELS 233 (259)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~-~~---l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 233 (259)
+++|++|++++|......|.. .. +++|++|++++|.++.+|..+. ++|+.|++++|.....+....+++|+.|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence 555555555554333322332 22 2455555555555555555432 45555555555333323323355555555
Q ss_pred cccc
Q 039152 234 LAEL 237 (259)
Q Consensus 234 l~~~ 237 (259)
++++
T Consensus 301 L~~N 304 (310)
T 4glp_A 301 LDGN 304 (310)
T ss_dssp CSST
T ss_pred CcCC
Confidence 5555
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=3.8e-16 Score=143.05 Aligned_cols=124 Identities=26% Similarity=0.277 Sum_probs=64.2
Q ss_pred CCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEec
Q 039152 91 LQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDL 166 (259)
Q Consensus 91 ~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l 166 (259)
+++++|++++|.++.+|. .++++++|++|++++|.+.. +..++.+++|++|++++|.+..+|.. ++.+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 455555555555554433 35555555555555555554 34455555555555555555555542 555555555555
Q ss_pred CCCCCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecc
Q 039152 167 RHCSNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDAN 215 (259)
Q Consensus 167 ~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~ 215 (259)
++|. +..++.. +++++|++|++++|.++.. |..++.+++|+.|++.+|
T Consensus 105 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 105 MSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp CSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred CCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 5532 2333321 4555555555555555432 333445555555555555
No 75
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.66 E-value=1e-15 Score=134.39 Aligned_cols=80 Identities=25% Similarity=0.414 Sum_probs=39.5
Q ss_pred HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152 87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL 166 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 166 (259)
+.++++|++|++++|.+..++. +..+++|++|++++|.+.+...++.+++|++|++++|.+..++ .+..+++|++|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l 250 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDL 250 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred hccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEEC
Confidence 4556666666666665555433 4555555555555555554222444444455544444444332 2334444444444
Q ss_pred CC
Q 039152 167 RH 168 (259)
Q Consensus 167 ~~ 168 (259)
++
T Consensus 251 ~~ 252 (466)
T 1o6v_A 251 AN 252 (466)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=3.3e-16 Score=130.48 Aligned_cols=154 Identities=21% Similarity=0.235 Sum_probs=125.6
Q ss_pred cccHHHHhCC-----CCccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC----chhh--hCCCCCcEEEecCCCC
Q 039152 81 AIPQNLLRSM-----LQVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD----MAVI--SDLKKLEILCLHGSSI 148 (259)
Q Consensus 81 ~l~~~~~~~l-----~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~----~~~~--~~l~~L~~L~l~~~~i 148 (259)
.+|. .|..+ ++|++|++++|.+..++ ..++.+++|++|++++|.+.+ ++.+ +.+++|++|++++|.+
T Consensus 135 ~~~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 135 TRDA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp SSSS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred chhH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 4453 34555 89999999999999766 689999999999999999765 3455 8899999999999999
Q ss_pred ccc---chh-hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcc
Q 039152 149 YQL---PVE-VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQD 222 (259)
Q Consensus 149 ~~l---p~~-i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~ 222 (259)
..+ +.. +..+++|++|++++|......|.. ..+++|++|++++|.++.+|..+. ++|+.|++++|.....+.
T Consensus 214 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC
T ss_pred cchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh
Confidence 844 333 457899999999996554444322 668999999999999999999866 899999999996555555
Q ss_pred cccccccceeecccc
Q 039152 223 TVQLWGIEELSLAEL 237 (259)
Q Consensus 223 ~~~l~~L~~L~l~~~ 237 (259)
...+++|+.|+++++
T Consensus 292 ~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 292 PDELPQVGNLSLKGN 306 (312)
T ss_dssp TTTSCEEEEEECTTC
T ss_pred HhhCCCCCEEeccCC
Confidence 444999999999998
No 77
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.66 E-value=8.7e-16 Score=134.51 Aligned_cols=142 Identities=21% Similarity=0.158 Sum_probs=101.7
Q ss_pred HhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEec
Q 039152 87 LRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDL 166 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 166 (259)
+..+++|++|++++|.++.+| ++.+++|++|++++|.++..+ ++.+++|++|++++|.++.++ ++.+++|++|++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l 155 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDC 155 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEEC
T ss_pred cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEEC
Confidence 578889999999999988775 788899999999999888843 788889999999999888774 777888888888
Q ss_pred CCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152 167 RHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL 237 (259)
Q Consensus 167 ~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (259)
++|..++.++. +.+++|+.|++++|.++.+| +..+++|+.|++++|..... ....+++|+.|++++|
T Consensus 156 ~~n~~~~~~~~-~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 156 HLNKKITKLDV-TPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp TTCSCCCCCCC-TTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSS
T ss_pred CCCCccccccc-ccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCC
Confidence 88766666543 56777777777777776665 45566666666665532222 1112455555555555
No 78
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=142.81 Aligned_cols=150 Identities=20% Similarity=0.175 Sum_probs=73.7
Q ss_pred hCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c--hhhhCCCCCcEEEecCCCCcc-cchhhccCCcCCE
Q 039152 88 RSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M--AVISDLKKLEILCLHGSSIYQ-LPVEVGQLTQLRS 163 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~ 163 (259)
.++++|++|++++|.+..+|..+..+++|++|++++|.+.. + ..+..+++|++|++++|.+.. .|..+..+++|++
T Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp HTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred cccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 34555555555555544444444555555555555555444 1 234455555555555555542 2334555555555
Q ss_pred EecCCCCCc-eeeCCC-CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCc-cccc-ccccceeecccc
Q 039152 164 LDLRHCSNL-QVIPLN-KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQ-DTVQ-LWGIEELSLAEL 237 (259)
Q Consensus 164 L~l~~~~~~-~~lp~~-~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~-~~~~-l~~L~~L~l~~~ 237 (259)
|++++|... ..+|.. ..+++|+.|++++|.++.+ |..+..+++|+.|++++|.....+ ..+. +++|+.|++++|
T Consensus 450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 555554332 234433 4555555555555555433 444455555555555555322222 1122 555555555554
No 79
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.9e-16 Score=118.91 Aligned_cols=130 Identities=24% Similarity=0.206 Sum_probs=106.4
Q ss_pred CCCCccEEEcCCCCCC--CCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcc-cchhhccCCcCCEEe
Q 039152 89 SMLQVRVLDLTDMNLL--SLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQ-LPVEVGQLTQLRSLD 165 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~ 165 (259)
.+++|+.|++++|.+. .+|..+..+++|++|++++|.++....++.+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 4578999999999998 7888889999999999999998887778889999999999999986 777777799999999
Q ss_pred cCCCCCceeeCC--C-CCCCCCcEEEeeccCCCccCC----CCcCCCCCCeEEeecccccC
Q 039152 166 LRHCSNLQVIPL--N-KHLPNLTSLELEVNDANTLPR----GGLFLEKPERIDLDANVRLK 219 (259)
Q Consensus 166 l~~~~~~~~lp~--~-~~l~~L~~L~l~~~~~~~~p~----~~~~l~~L~~L~l~~~~~~~ 219 (259)
+++| .+..+|. . ..+++|++|++++|.++.+|. .+..+++|+.|++.+|...+
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9985 4555542 2 778888888888888887776 56678888888887774433
No 80
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=1.2e-15 Score=133.90 Aligned_cols=124 Identities=29% Similarity=0.258 Sum_probs=50.9
Q ss_pred cCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEee
Q 039152 111 GLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELE 190 (259)
Q Consensus 111 ~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~ 190 (259)
..+++|++|++++|.+.....+..+++|++|++++|.+..+|. +..+++|+.|++++|. +..++....+++|+.|+++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLY 317 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECC
T ss_pred hcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECc
Confidence 3344444444444444332123444444444444444443333 3444444444444422 2222222344444455554
Q ss_pred ccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152 191 VNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL 237 (259)
Q Consensus 191 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (259)
+|.++.++. +..+++|+.|++++|.....+....+++|+.|++++|
T Consensus 318 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 318 FNNISDISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN 363 (466)
T ss_dssp SSCCSCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred CCcCCCchh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCC
Confidence 444443332 3444455555554442222222222555555555555
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.65 E-value=4.6e-16 Score=140.82 Aligned_cols=134 Identities=30% Similarity=0.357 Sum_probs=112.7
Q ss_pred cccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-
Q 039152 79 FFAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE- 154 (259)
Q Consensus 79 l~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~- 154 (259)
+.++|.++ .+++++|++++|.++.+|. .|.++++|++|++++|.++. +..+..+++|++|++++|+++.+|..
T Consensus 43 l~~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 43 FYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp CSSCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred cCccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 45677753 3578999999999998764 68999999999999999988 45688999999999999999988865
Q ss_pred hccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeeccc
Q 039152 155 VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDANV 216 (259)
Q Consensus 155 i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~ 216 (259)
+.++++|++|++++| .+..+|.. +++++|++|++++|.++. +|..++.+++|++|++++|.
T Consensus 120 f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 120 FSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp GTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 789999999999985 45666654 889999999999999864 56777889999999999874
No 82
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=9e-16 Score=122.26 Aligned_cols=142 Identities=28% Similarity=0.295 Sum_probs=119.6
Q ss_pred ccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCC
Q 039152 93 VRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHC 169 (259)
Q Consensus 93 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~ 169 (259)
-+.++.+++.+..+|..+. ++|++|++++|.++. +..+..+++|++|++++|++..+|.. +..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4678888999998888664 889999999999988 56788999999999999999988865 688999999999985
Q ss_pred CCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcc-ccc-ccccceeecccc
Q 039152 170 SNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQD-TVQ-LWGIEELSLAEL 237 (259)
Q Consensus 170 ~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~-l~~L~~L~l~~~ 237 (259)
.+..++.. ..+++|+.|++++|.++.+|..+..+++|+.|++++|.....+. .+. +++|+.|++.++
T Consensus 99 -~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 99 -QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred -cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 55666654 78999999999999999999998999999999999985544433 233 899999999887
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.65 E-value=7.2e-16 Score=141.23 Aligned_cols=116 Identities=27% Similarity=0.247 Sum_probs=66.4
Q ss_pred chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCCceeeCC----------CCCCCCCcEEEeeccCCCcc
Q 039152 129 MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPL----------NKHLPNLTSLELEVNDANTL 197 (259)
Q Consensus 129 ~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~----------~~~l~~L~~L~l~~~~~~~~ 197 (259)
|..++.+++|++|++++|++..+|+. +..+++|+.|++++|. +..++. ...+++|+.|++++|.++.+
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 34455566666666666666655443 5566666666666643 222211 14556666777766666666
Q ss_pred CCC-CcCCCCCCeEEeecccccCCcccc--cccccceeeccccchhhhhhhhh
Q 039152 198 PRG-GLFLEKPERIDLDANVRLKDQDTV--QLWGIEELSLAELLDHIKNFVNK 247 (259)
Q Consensus 198 p~~-~~~l~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~ 247 (259)
|.. +.++++|+.|++++|.....+... .+++|+.|++++| .+..+++.
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N--~l~~~~~~ 602 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN--LITSVEKK 602 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS--CCCBCCHH
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC--cCCccChh
Confidence 653 456667777777666444443332 2667777777776 55555543
No 84
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.65 E-value=1.2e-15 Score=138.01 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=122.4
Q ss_pred EEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCC
Q 039152 95 VLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSN 171 (259)
Q Consensus 95 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~ 171 (259)
+.+-++-.++.+|..+. .++++|+|++|.++. + .++..+++|++|++++|+++.+|++ |.++++|++|++++| .
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P 111 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-c
Confidence 45556667888998664 579999999999998 4 6799999999999999999998765 899999999999995 5
Q ss_pred ceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccC--Cccccc-ccccceeeccccchhhhhhh
Q 039152 172 LQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLK--DQDTVQ-LWGIEELSLAELLDHIKNFV 245 (259)
Q Consensus 172 ~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~--~~~~~~-l~~L~~L~l~~~~~~~~~~~ 245 (259)
+..+|.. .++++|++|++++|.++.+|.. ++.+++|+.|++++|.... .+..+. +++|+.|+++++ .+..++
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N--~l~~~~ 189 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--KIQSIY 189 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS--CCCEEC
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc--cccccc
Confidence 6777765 8899999999999999988764 7899999999999995433 344444 999999999998 565554
Q ss_pred h
Q 039152 246 N 246 (259)
Q Consensus 246 ~ 246 (259)
.
T Consensus 190 ~ 190 (635)
T 4g8a_A 190 C 190 (635)
T ss_dssp G
T ss_pred c
Confidence 3
No 85
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=2.3e-15 Score=119.22 Aligned_cols=136 Identities=18% Similarity=0.136 Sum_probs=108.8
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCc--hhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLP--SSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE- 154 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~- 154 (259)
..+|..+ .+.+++|++++|.++.++ ..+..+++|++|++++|.++. + ..++.+++|++|++++|.+..+|..
T Consensus 24 ~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 24 NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhH
Confidence 4566643 346789999999998763 347889999999999999988 3 5788999999999999999977665
Q ss_pred hccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeeccccc
Q 039152 155 VGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRL 218 (259)
Q Consensus 155 i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~ 218 (259)
+..+++|++|++++|......|.. ..+++|++|++++|.++.+ |..+..+++|+.|++.+|...
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 888999999999985544333433 7889999999999999876 667788999999999988433
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.64 E-value=1.7e-15 Score=134.47 Aligned_cols=139 Identities=19% Similarity=0.195 Sum_probs=93.7
Q ss_pred cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEEecCCCC
Q 039152 94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCS 170 (259)
Q Consensus 94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~ 170 (259)
+++++++|.++.+|..+. ++|++|++++|.+.. +..+..+++|++|++++|++..+ |..++.+++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N- 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN- 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-
Confidence 467777777777776554 677777777777776 35677777777777777777755 556777777777777774
Q ss_pred CceeeCCCCCCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeecccccCCccccccccc--ceeecccc
Q 039152 171 NLQVIPLNKHLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDANVRLKDQDTVQLWGI--EELSLAEL 237 (259)
Q Consensus 171 ~~~~lp~~~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L--~~L~l~~~ 237 (259)
.+..+|.. .+++|++|++++|.++. +|..++.+++|++|++++|.... .....+++| +.|++++|
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEEC
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-hhccccccceeeEEEeecc
Confidence 44566665 77777777777777754 45666777777777777764322 122225555 77777766
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=8e-16 Score=127.99 Aligned_cols=172 Identities=13% Similarity=0.072 Sum_probs=134.5
Q ss_pred cccHHHH-hCCCCccEEEcCCCCCCC-Cc----hhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcc--
Q 039152 81 AIPQNLL-RSMLQVRVLDLTDMNLLS-LP----SSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQ-- 150 (259)
Q Consensus 81 ~l~~~~~-~~l~~L~~L~l~~~~~~~-lp----~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~-- 150 (259)
..|..++ ..+++|++|++++|.+.. .+ ..+..+++|++|++++|.+.. +..++.+++|++|++++|++..
T Consensus 106 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 185 (310)
T 4glp_A 106 TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER 185 (310)
T ss_dssp CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH
T ss_pred chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch
Confidence 4444433 689999999999999984 23 345679999999999999988 4688899999999999998753
Q ss_pred -cchh--hccCCcCCEEecCCCCCceeeCCC-----CCCCCCcEEEeeccCCCcc-CCCCcCC---CCCCeEEeeccccc
Q 039152 151 -LPVE--VGQLTQLRSLDLRHCSNLQVIPLN-----KHLPNLTSLELEVNDANTL-PRGGLFL---EKPERIDLDANVRL 218 (259)
Q Consensus 151 -lp~~--i~~l~~L~~L~l~~~~~~~~lp~~-----~~l~~L~~L~l~~~~~~~~-p~~~~~l---~~L~~L~l~~~~~~ 218 (259)
++.. ++.+++|++|++++|. +..++.. ..+++|++|++++|.++.. |..++.+ ++|+.|++++|...
T Consensus 186 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 186 GLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp HHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred hhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 4333 4689999999999964 4444432 5779999999999999866 8777766 69999999999655
Q ss_pred CCcccccccccceeeccccchhhhhhhhhhhhcccccccCC
Q 039152 219 KDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKYL 259 (259)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~L 259 (259)
..+..+ .++|+.|++++| .+..+|. ...+++|+.|
T Consensus 265 ~lp~~~-~~~L~~L~Ls~N--~l~~~~~---~~~l~~L~~L 299 (310)
T 4glp_A 265 QVPKGL-PAKLRVLDLSSN--RLNRAPQ---PDELPEVDNL 299 (310)
T ss_dssp SCCSCC-CSCCSCEECCSC--CCCSCCC---TTSCCCCSCE
T ss_pred chhhhh-cCCCCEEECCCC--cCCCCch---hhhCCCccEE
Confidence 555544 389999999999 7777654 3467777754
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=2.6e-15 Score=133.31 Aligned_cols=149 Identities=21% Similarity=0.214 Sum_probs=117.1
Q ss_pred hCCCCccEEEcCCCCCCC-CchhhcCCCCCcEEEecCCCCCC----chhhhCCCCCcEEEecCCCCcc-cchh-hccCCc
Q 039152 88 RSMLQVRVLDLTDMNLLS-LPSSIGLLTNLHTLCLYSCILKD----MAVISDLKKLEILCLHGSSIYQ-LPVE-VGQLTQ 160 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~i~~-lp~~-i~~l~~ 160 (259)
..+++|++|++++|.+.. +|..++.+++|++|++++|.+.+ |..++.+++|++|++++|.+.. +|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 467888888888888885 67778888888888888888886 3567888888888888888886 7775 677888
Q ss_pred CCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccc-cc-ccccceeecccc
Q 039152 161 LRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDT-VQ-LWGIEELSLAEL 237 (259)
Q Consensus 161 L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-~~-l~~L~~L~l~~~ 237 (259)
|++|++++|...+..|.. -.++|+.|++++|.++.+|..++.+++|+.|++++|.....+.. +. +++|+.|++++|
T Consensus 401 L~~L~Ls~N~l~~~~~~~-l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRC-LPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCEEECCSSCCCGGGGGS-CCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECcCCCCCcchhhh-hcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 888888887655555542 12688999999998888888888889999999998855555443 33 888999998877
No 89
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=3.3e-15 Score=118.22 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=99.3
Q ss_pred cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c--hhhhCCCCCcEEEecCCCCcccch-hhccCCcCCEEecCCC
Q 039152 94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M--AVISDLKKLEILCLHGSSIYQLPV-EVGQLTQLRSLDLRHC 169 (259)
Q Consensus 94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~ 169 (259)
+.++++++.++.+|..+. ..+++|++++|.++. + ..++.+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 477788887777776553 346788888888776 2 236778888888888888876665 5777888888888874
Q ss_pred CCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCC-ccccc-ccccceeecccc
Q 039152 170 SNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWGIEELSLAEL 237 (259)
Q Consensus 170 ~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L~~L~l~~~ 237 (259)
. +..++.. ..+++|++|++++|.++.+ |..+..+++|+.|++++|..... +..+. +++|+.|+++++
T Consensus 92 ~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 92 R-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp C-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred c-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 3 4444443 6778888888888887655 55566778888888887744443 33333 778888888766
No 90
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=2.7e-15 Score=127.45 Aligned_cols=154 Identities=27% Similarity=0.212 Sum_probs=121.8
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchh-hc-CCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSS-IG-LLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE- 154 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~-~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~- 154 (259)
..+|..+ .+.++.|++++|.++.++.. +. .+.+|++|++++|.++. +..+..+++|++|++++|.+..+|..
T Consensus 31 ~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 107 (361)
T 2xot_A 31 PNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL 107 (361)
T ss_dssp SSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHH
Confidence 4567654 34689999999999977654 55 89999999999999998 35789999999999999999988764
Q ss_pred hccCCcCCEEecCCCCCceeeCC-C-CCCCCCcEEEeeccCCCccCCCC----cCCCCCCeEEeecccccCCcc-ccc-c
Q 039152 155 VGQLTQLRSLDLRHCSNLQVIPL-N-KHLPNLTSLELEVNDANTLPRGG----LFLEKPERIDLDANVRLKDQD-TVQ-L 226 (259)
Q Consensus 155 i~~l~~L~~L~l~~~~~~~~lp~-~-~~l~~L~~L~l~~~~~~~~p~~~----~~l~~L~~L~l~~~~~~~~~~-~~~-l 226 (259)
+..+++|++|++++|. +..++. . ..+++|+.|++++|.++.+|..+ ..+++|+.|++++|.....+. .+. +
T Consensus 108 ~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 186 (361)
T 2xot_A 108 FSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186 (361)
T ss_dssp TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred hCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence 8899999999999955 455543 3 88999999999999999888775 468999999999985554432 222 5
Q ss_pred cc--cceeecccc
Q 039152 227 WG--IEELSLAEL 237 (259)
Q Consensus 227 ~~--L~~L~l~~~ 237 (259)
+. |+.|++.+|
T Consensus 187 ~~~~l~~l~l~~N 199 (361)
T 2xot_A 187 PAWVKNGLYLHNN 199 (361)
T ss_dssp CHHHHTTEECCSS
T ss_pred cHhhcceEEecCC
Confidence 55 478899876
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=1.9e-15 Score=135.33 Aligned_cols=133 Identities=20% Similarity=0.171 Sum_probs=63.2
Q ss_pred CCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCC
Q 039152 90 MLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRH 168 (259)
Q Consensus 90 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~ 168 (259)
+++|++|++++|.++.+|. ++. +|++|++++|.++. |. .+++|++|++++|.++.+|. .+++|++|++++
T Consensus 99 l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred cCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCC
Confidence 4445555555555554444 333 45555555555544 22 34555555555555554444 344555555555
Q ss_pred CCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCC-------CeEEeecccccCCccccc-ccccceeecccc
Q 039152 169 CSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKP-------ERIDLDANVRLKDQDTVQ-LWGIEELSLAEL 237 (259)
Q Consensus 169 ~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L-------~~L~l~~~~~~~~~~~~~-l~~L~~L~l~~~ 237 (259)
|. +..+|. -. ++|+.|++++|.++.+|. +.. +| +.|++++|.....|..+. +++|+.|++++|
T Consensus 170 N~-L~~lp~-l~-~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 170 NQ-LTFLPE-LP-ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SC-CSCCCC-CC-TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSS
T ss_pred CC-CCCcch-hh-CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCC
Confidence 32 333443 11 455555555555555554 332 44 555555553333333222 555555555555
No 92
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=3.7e-16 Score=115.99 Aligned_cols=124 Identities=23% Similarity=0.185 Sum_probs=102.7
Q ss_pred CCCCccEEEcCCCCCC--CCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcc-cchhhccCCcCCEEe
Q 039152 89 SMLQVRVLDLTDMNLL--SLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQ-LPVEVGQLTQLRSLD 165 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~ 165 (259)
..++++.|++++|.+. .+|..+..+++|++|++++|.++....++.+++|++|++++|.+.. +|..++.+++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3568999999999998 7888889999999999999998887778889999999999999986 777777899999999
Q ss_pred cCCCCCceeeC--CC-CCCCCCcEEEeeccCCCccCC----CCcCCCCCCeEEee
Q 039152 166 LRHCSNLQVIP--LN-KHLPNLTSLELEVNDANTLPR----GGLFLEKPERIDLD 213 (259)
Q Consensus 166 l~~~~~~~~lp--~~-~~l~~L~~L~l~~~~~~~~p~----~~~~l~~L~~L~l~ 213 (259)
+++|. +..+| .. ..+++|++|++++|.++.+|. .+..+++|+.|+++
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99854 44443 22 778888888888888887776 45678888887764
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=1.3e-14 Score=113.68 Aligned_cols=141 Identities=26% Similarity=0.305 Sum_probs=118.4
Q ss_pred cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCC
Q 039152 94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCS 170 (259)
Q Consensus 94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~ 170 (259)
+.++..++.+..+|..+ ..+|++|++++|.++. + ..++.+++|++|++++|++..+|.. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN- 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-
Confidence 57788888888888765 4689999999999998 4 4578999999999999999988776 689999999999995
Q ss_pred CceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCccc-cc-ccccceeecccc
Q 039152 171 NLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQDT-VQ-LWGIEELSLAEL 237 (259)
Q Consensus 171 ~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~-~~-l~~L~~L~l~~~ 237 (259)
.+..+|.. ..+++|++|++++|.++.+|.. +..+++|+.|++++|.....+.. +. +++|+.|+++++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 45566654 7899999999999999988775 57899999999999955444433 33 999999999988
No 94
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=5.3e-16 Score=118.51 Aligned_cols=126 Identities=16% Similarity=0.178 Sum_probs=85.4
Q ss_pred hCCCCccEEEcCCCCCCCCchhhcCCC-CCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhh-ccCCcCCEEe
Q 039152 88 RSMLQVRVLDLTDMNLLSLPSSIGLLT-NLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEV-GQLTQLRSLD 165 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~ 165 (259)
..+++|+.|++++|.++.+|. +..+. +|++|++++|.++..+.++.+++|++|++++|.+..+|+.+ +.+++|++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 466778888888888877765 44444 78888888887777666777778888888888777776554 6777777777
Q ss_pred cCCCCCceeeCC--C-CCCCCCcEEEeeccCCCccCCC----CcCCCCCCeEEeecc
Q 039152 166 LRHCSNLQVIPL--N-KHLPNLTSLELEVNDANTLPRG----GLFLEKPERIDLDAN 215 (259)
Q Consensus 166 l~~~~~~~~lp~--~-~~l~~L~~L~l~~~~~~~~p~~----~~~l~~L~~L~l~~~ 215 (259)
+++| .+..+|. . ..+++|+.|++++|.++.+|.. +..+++|+.|++..+
T Consensus 95 L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 7774 3455554 1 5666667777776666666653 455566665555544
No 95
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.62 E-value=3.2e-15 Score=140.26 Aligned_cols=126 Identities=28% Similarity=0.263 Sum_probs=75.6
Q ss_pred CCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC---chhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEE
Q 039152 90 MLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD---MAVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSL 164 (259)
Q Consensus 90 l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L 164 (259)
.+++++|++++|.++.+ |..++++++|++|++++|.... +..++.+++|++|++++|.+..+ |..++++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 35666666666666643 4556666666666666664333 34566666666666666666644 5556666666666
Q ss_pred ecCCCCCceeeCCC---CCCCCCcEEEeeccCCCccC--CCCcCCCCCCeEEeecc
Q 039152 165 DLRHCSNLQVIPLN---KHLPNLTSLELEVNDANTLP--RGGLFLEKPERIDLDAN 215 (259)
Q Consensus 165 ~l~~~~~~~~lp~~---~~l~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L~l~~~ 215 (259)
++++|......|.. .++++|++|++++|.++.++ ..++++++|+.|++++|
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 66665444433332 56666666666666665432 24556666666666665
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.61 E-value=7.6e-15 Score=137.67 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=37.9
Q ss_pred CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCC-ccccc-ccccceeeccccchhhhhhhhhhhhccccc
Q 039152 179 KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKD-QDTVQ-LWGIEELSLAELLDHIKNFVNKLVKVGSSQ 255 (259)
Q Consensus 179 ~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~ 255 (259)
..+++|+.|++++|.++.+ |..+..+++|+.|++++|..... +..+. +++|+.|++++| .+..++... +.++++
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--~i~~~~~~~-~~~l~~ 363 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN--HIAIIQDQT-FKFLEK 363 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC--CCCCCCSSC-SCSCCC
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC--CCCccChhh-hcCCCC
Confidence 3445555555555555433 33344555666666665533222 22222 666666666666 444444432 344555
Q ss_pred ccC
Q 039152 256 LKY 258 (259)
Q Consensus 256 L~~ 258 (259)
|++
T Consensus 364 L~~ 366 (844)
T 3j0a_A 364 LQT 366 (844)
T ss_dssp CCE
T ss_pred CCE
Confidence 543
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=4e-15 Score=126.41 Aligned_cols=147 Identities=19% Similarity=0.150 Sum_probs=75.4
Q ss_pred cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhh-CCCCCcEEEecCCCCcccch-hhccCCcCCEEecCCC
Q 039152 94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVIS-DLKKLEILCLHGSSIYQLPV-EVGQLTQLRSLDLRHC 169 (259)
Q Consensus 94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~-~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~ 169 (259)
++++++++.++.+|..+. ..+++|++++|.++. + ..+. .+++|++|++++|++..++. .+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 355555555555555432 235555666655555 2 2233 55556666666555555543 3555555666666553
Q ss_pred CCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeecccccCCcccc-----cccccceeeccccchhh
Q 039152 170 SNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANVRLKDQDTV-----QLWGIEELSLAELLDHI 241 (259)
Q Consensus 170 ~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~ 241 (259)
.+..++.. ..+++|+.|++++|.++.+ |..+..+++|+.|++++|.....+..+ .+++|+.|+++++ .+
T Consensus 99 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N--~l 175 (361)
T 2xot_A 99 -HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN--KL 175 (361)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS--CC
T ss_pred -cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC--CC
Confidence 33444432 4555556666666555544 334445555666666555333332222 1555555665555 44
Q ss_pred hhhh
Q 039152 242 KNFV 245 (259)
Q Consensus 242 ~~~~ 245 (259)
..++
T Consensus 176 ~~l~ 179 (361)
T 2xot_A 176 KKLP 179 (361)
T ss_dssp CCCC
T ss_pred CccC
Confidence 4444
No 98
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=134.82 Aligned_cols=123 Identities=28% Similarity=0.285 Sum_probs=58.5
Q ss_pred CccEEEcCCCCCCCCc-hhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccc-hhhccCCcCCEEecC
Q 039152 92 QVRVLDLTDMNLLSLP-SSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLP-VEVGQLTQLRSLDLR 167 (259)
Q Consensus 92 ~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~ 167 (259)
++++|++++|.++.++ ..+..+++|++|++++|.++. +..++.+++|++|++++|.+..+| ..++.+++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 4455555555554332 234455555555555555444 233445555555555555554443 234455555555555
Q ss_pred CCCCceeeCCC--CCCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeecc
Q 039152 168 HCSNLQVIPLN--KHLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDAN 215 (259)
Q Consensus 168 ~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~ 215 (259)
+| .+..++.. +++++|++|++++|.++. +|..++++++|+.|++++|
T Consensus 109 ~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 109 ET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred cc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 42 23333321 445555555555555432 3444445555555555544
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=1e-15 Score=129.46 Aligned_cols=175 Identities=16% Similarity=0.129 Sum_probs=126.1
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCC-CCch-hhcCCCCCcE-EEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLL-SLPS-SIGLLTNLHT-LCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE 154 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~-~lp~-~i~~l~~L~~-L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~ 154 (259)
..+|++.|.++++|++|++++|.+. .+|. .+.+++++.. +.+.+|.+.. +..+..+++|++|++++|++..+|..
T Consensus 43 ~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 43 RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122 (350)
T ss_dssp SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCch
Confidence 5677777888888888888888875 3544 4677777654 5566677777 45677888888888888888877653
Q ss_pred -hccCCcCCEEecCCCCCceeeCCC--CC-CCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecc-cccCCcccc--ccc
Q 039152 155 -VGQLTQLRSLDLRHCSNLQVIPLN--KH-LPNLTSLELEVNDANTLPRGGLFLEKPERIDLDAN-VRLKDQDTV--QLW 227 (259)
Q Consensus 155 -i~~l~~L~~L~l~~~~~~~~lp~~--~~-l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~~~~~~~--~l~ 227 (259)
+....++..+++.++..+..++.. .. ...++.|++++|.++.+|..++...+|++|.+.++ .....+..+ .++
T Consensus 123 ~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred hhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence 456667777888776777777764 23 34688899999999989888777888888888754 333444332 388
Q ss_pred ccceeeccccchhhhhhhhhhhhccccccc
Q 039152 228 GIEELSLAELLDHIKNFVNKLVKVGSSQLK 257 (259)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~ 257 (259)
+|+.|+++++ .+..+|... +.++++|+
T Consensus 203 ~L~~LdLs~N--~l~~lp~~~-~~~L~~L~ 229 (350)
T 4ay9_X 203 GPVILDISRT--RIHSLPSYG-LENLKKLR 229 (350)
T ss_dssp CCSEEECTTS--CCCCCCSSS-CTTCCEEE
T ss_pred ccchhhcCCC--CcCccChhh-hccchHhh
Confidence 9999999988 788887653 44444443
No 100
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.60 E-value=7.1e-15 Score=131.89 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=118.1
Q ss_pred hCCCCccEEEcCCCCCCC-CchhhcCCCCCcEEEecCCCCCC----chhhhCCCCCcEEEecCCCCcc-cchh-hccCCc
Q 039152 88 RSMLQVRVLDLTDMNLLS-LPSSIGLLTNLHTLCLYSCILKD----MAVISDLKKLEILCLHGSSIYQ-LPVE-VGQLTQ 160 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~i~~-lp~~-i~~l~~ 160 (259)
..+++|++|++++|.+.. .|..++.+++|++|++++|.++. +..++.+++|++|++++|.+.. +|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 467888888888888885 67778888889999998888876 2457788889999998888885 7765 677888
Q ss_pred CCEEecCCCCCceeeCCCCCC-CCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccc-cc-ccccceeecccc
Q 039152 161 LRSLDLRHCSNLQVIPLNKHL-PNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDT-VQ-LWGIEELSLAEL 237 (259)
Q Consensus 161 L~~L~l~~~~~~~~lp~~~~l-~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-~~-l~~L~~L~l~~~ 237 (259)
|++|++++|...+..|. .+ ++|+.|++++|.++.+|..++.+++|+.|++++|.....+.. +. +++|+.|++++|
T Consensus 430 L~~L~l~~n~l~~~~~~--~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCEEECCSSCCCGGGGS--SCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCEEECCCCCCCcchhh--hhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 89999988765555554 33 689999999999988998888899999999998855555543 33 888999999887
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.60 E-value=1e-14 Score=130.82 Aligned_cols=163 Identities=18% Similarity=0.225 Sum_probs=133.1
Q ss_pred CCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccc---hhhccCCcCCEEe
Q 039152 91 LQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLP---VEVGQLTQLRSLD 165 (259)
Q Consensus 91 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp---~~i~~l~~L~~L~ 165 (259)
.+|+.|++++|.+...+. ...+++|++|++++|.+++ +..++.+++|++|++++|++..++ ..++.+++|++|+
T Consensus 331 ~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred CcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 679999999998875442 2678999999999999998 678999999999999999998654 5688999999999
Q ss_pred cCCCCCceeeCCC--CCCCCCcEEEeeccCCC-ccCCCCcCCCCCCeEEeecccccCCcccc-cccccceeeccccchhh
Q 039152 166 LRHCSNLQVIPLN--KHLPNLTSLELEVNDAN-TLPRGGLFLEKPERIDLDANVRLKDQDTV-QLWGIEELSLAELLDHI 241 (259)
Q Consensus 166 l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~ 241 (259)
+++|.....+|.. ..+++|+.|++++|.++ .+|..+. ++|+.|++++|.....+..+ .+++|+.|++++| .+
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N--~l 485 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN--QL 485 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS--CC
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC--CC
Confidence 9997655547765 78899999999999985 5665533 79999999999555555544 4999999999999 77
Q ss_pred hhhhhhhhhcccccccCC
Q 039152 242 KNFVNKLVKVGSSQLKYL 259 (259)
Q Consensus 242 ~~~~~~l~~~~l~~L~~L 259 (259)
..+|... +..+++|+.|
T Consensus 486 ~~l~~~~-~~~l~~L~~L 502 (562)
T 3a79_B 486 KSVPDGV-FDRLTSLQYI 502 (562)
T ss_dssp CCCCTTS-TTTCTTCCCE
T ss_pred CCCCHHH-HhcCCCCCEE
Confidence 7888762 4577877754
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=1.8e-16 Score=133.01 Aligned_cols=169 Identities=22% Similarity=0.222 Sum_probs=127.6
Q ss_pred hCCCCccEEEcCCCCCCC--CchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCC-CCc--ccchhhccCCc
Q 039152 88 RSMLQVRVLDLTDMNLLS--LPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGS-SIY--QLPVEVGQLTQ 160 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~-~i~--~lp~~i~~l~~ 160 (259)
..+++|++|++++|.+.. +|..+..+++|++|++++|.+.+ +..++.+++|++|++++| .+. .+|..+..+++
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 368899999999998873 77788899999999999999886 678888999999999999 677 47777888999
Q ss_pred CCEEecCCCCCcee--eCCC-CCCC-CCcEEEeeccC--C--CccCCCCcCCCCCCeEEeecccccC--Cccccc-cccc
Q 039152 161 LRSLDLRHCSNLQV--IPLN-KHLP-NLTSLELEVND--A--NTLPRGGLFLEKPERIDLDANVRLK--DQDTVQ-LWGI 229 (259)
Q Consensus 161 L~~L~l~~~~~~~~--lp~~-~~l~-~L~~L~l~~~~--~--~~~p~~~~~l~~L~~L~l~~~~~~~--~~~~~~-l~~L 229 (259)
|++|++++|..+.. ++.. ..++ +|++|++++|. + ..+|..+..+++|+.|++++|.... ....+. +++|
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 99999999734442 2322 6778 99999999994 4 3567777789999999999986432 233333 8999
Q ss_pred ceeeccccchhhh-hhhhhhhhcccccccCC
Q 039152 230 EELSLAELLDHIK-NFVNKLVKVGSSQLKYL 259 (259)
Q Consensus 230 ~~L~l~~~~~~~~-~~~~~l~~~~l~~L~~L 259 (259)
+.|++++| ..+. ..... ...+++|+.|
T Consensus 250 ~~L~l~~~-~~~~~~~~~~--l~~~~~L~~L 277 (336)
T 2ast_B 250 QHLSLSRC-YDIIPETLLE--LGEIPTLKTL 277 (336)
T ss_dssp CEEECTTC-TTCCGGGGGG--GGGCTTCCEE
T ss_pred CEeeCCCC-CCCCHHHHHH--HhcCCCCCEE
Confidence 99999999 2221 11112 3457777654
No 103
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=1.1e-14 Score=112.74 Aligned_cols=120 Identities=22% Similarity=0.259 Sum_probs=95.0
Q ss_pred cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-ch--hhhCCCCCcEEEecCCCCccc-chhhccCCcCCEEecCCC
Q 039152 94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MA--VISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHC 169 (259)
Q Consensus 94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~ 169 (259)
++++++++.++.+|..+.. ++++|++++|.++. ++ .++.+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6788888888888876644 88888999888887 43 378888899999998888866 566888888999999885
Q ss_pred CCceeeCCC--CCCCCCcEEEeeccCCCcc-CCCCcCCCCCCeEEeeccc
Q 039152 170 SNLQVIPLN--KHLPNLTSLELEVNDANTL-PRGGLFLEKPERIDLDANV 216 (259)
Q Consensus 170 ~~~~~lp~~--~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~ 216 (259)
. +..++.. ..+++|++|++++|.++.+ |..+..+++|+.|++.+|.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 4 4445443 6788899999999988754 6667788889999988873
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=4.1e-16 Score=133.60 Aligned_cols=170 Identities=15% Similarity=0.103 Sum_probs=114.8
Q ss_pred HhCCCCccEEEcCCCCCCC-----CchhhcCCCCCcEEEecCCCCCC--chh----hhCC---------CCCcEEEecCC
Q 039152 87 LRSMLQVRVLDLTDMNLLS-----LPSSIGLLTNLHTLCLYSCILKD--MAV----ISDL---------KKLEILCLHGS 146 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~--~~~----~~~l---------~~L~~L~l~~~ 146 (259)
|..+++|++|++++|.+.. +|..+..+++|++|++++|.+.. +.. +..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 4677888888888888775 66677788888888888888764 222 3333 78888888888
Q ss_pred CCc--ccc---hhhccCCcCCEEecCCCCCce-----eeC-CCCCCCCCcEEEeeccCC-----CccCCCCcCCCCCCeE
Q 039152 147 SIY--QLP---VEVGQLTQLRSLDLRHCSNLQ-----VIP-LNKHLPNLTSLELEVNDA-----NTLPRGGLFLEKPERI 210 (259)
Q Consensus 147 ~i~--~lp---~~i~~l~~L~~L~l~~~~~~~-----~lp-~~~~l~~L~~L~l~~~~~-----~~~p~~~~~l~~L~~L 210 (259)
++. .+| ..+..+++|++|++++|.... ..| ...++++|++|++++|.+ ..+|..+..+++|+.|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 775 444 456678888888888864321 122 225778888888888887 4567777778888888
Q ss_pred EeecccccCC-----cccc---cccccceeeccccchhhhh-----hhhhhhhcccccccCC
Q 039152 211 DLDANVRLKD-----QDTV---QLWGIEELSLAELLDHIKN-----FVNKLVKVGSSQLKYL 259 (259)
Q Consensus 211 ~l~~~~~~~~-----~~~~---~l~~L~~L~l~~~~~~~~~-----~~~~l~~~~l~~L~~L 259 (259)
++++|..... +..+ .+++|+.|++++| .+.. +|..+ ...+++|++|
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n--~i~~~g~~~l~~~l-~~~l~~L~~L 308 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN--EIELDAVRTLKTVI-DEKMPDLLFL 308 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS--CCBHHHHHHHHHHH-HHHCTTCCEE
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC--cCCHHHHHHHHHHH-HhcCCCceEE
Confidence 8887743322 1121 1677888888888 4444 66554 2346666643
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=1.4e-15 Score=127.64 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=124.8
Q ss_pred HHHhCCCCccEEEcCCCCCC-CCchhhcCCCCCcEEEecCC-CCCC---chhhhCCCCCcEEEecCC-CCcc--cchhhc
Q 039152 85 NLLRSMLQVRVLDLTDMNLL-SLPSSIGLLTNLHTLCLYSC-ILKD---MAVISDLKKLEILCLHGS-SIYQ--LPVEVG 156 (259)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~-~~~~---~~~~~~l~~L~~L~l~~~-~i~~--lp~~i~ 156 (259)
..+..+++|++|++++|.++ ..|..++.+++|++|++++| .+++ +..+..+++|++|++++| .+.. ++..+.
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 35689999999999999988 57778999999999999999 6775 456888999999999999 8883 677789
Q ss_pred cCC-cCCEEecCCCC-Cc--eeeCCC-CCCCCCcEEEeeccC-CC-ccCCCCcCCCCCCeEEeecccccCCc---ccccc
Q 039152 157 QLT-QLRSLDLRHCS-NL--QVIPLN-KHLPNLTSLELEVND-AN-TLPRGGLFLEKPERIDLDANVRLKDQ---DTVQL 226 (259)
Q Consensus 157 ~l~-~L~~L~l~~~~-~~--~~lp~~-~~l~~L~~L~l~~~~-~~-~~p~~~~~l~~L~~L~l~~~~~~~~~---~~~~l 226 (259)
.++ +|++|++++|. .+ ..+|.. .++++|+.|++++|. ++ ..+..+..+++|+.|++++|...... ....+
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 999 99999999974 22 223332 678999999999999 54 56677889999999999999633332 12239
Q ss_pred cccceeecccc
Q 039152 227 WGIEELSLAEL 237 (259)
Q Consensus 227 ~~L~~L~l~~~ 237 (259)
++|+.|++++|
T Consensus 272 ~~L~~L~l~~~ 282 (336)
T 2ast_B 272 PTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEeccCc
Confidence 99999999988
No 106
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=3.4e-14 Score=110.13 Aligned_cols=119 Identities=27% Similarity=0.312 Sum_probs=82.5
Q ss_pred cEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccch-hhccCCcCCEEecCCCCC
Q 039152 94 RVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPV-EVGQLTQLRSLDLRHCSN 171 (259)
Q Consensus 94 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~ 171 (259)
++++++++.++.+|..+. .+|++|++++|.++. |..+..+++|++|++++|.++.++. .+..+++|++|++++| .
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-R 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-c
Confidence 467777777777776543 467777777777776 6677777777777777777776654 3677777777777774 3
Q ss_pred ceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecc
Q 039152 172 LQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDAN 215 (259)
Q Consensus 172 ~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~ 215 (259)
+..++.. ..+++|++|++++|.++.+|.. +..+++|+.|++.+|
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 4444443 6677777777777777777664 456777777777766
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=3.3e-15 Score=113.09 Aligned_cols=132 Identities=20% Similarity=0.210 Sum_probs=110.3
Q ss_pred CCCCCcEEEecCCCCC--C-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEE
Q 039152 112 LLTNLHTLCLYSCILK--D-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSL 187 (259)
Q Consensus 112 ~l~~L~~L~l~~~~~~--~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L 187 (259)
..++|++|++++|.+. . |..+..+++|++|++++|.+..+ ..+..+++|++|++++|.....+|.. ..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4578999999999998 4 66678999999999999999987 77999999999999997654445544 569999999
Q ss_pred EeeccCCCccC--CCCcCCCCCCeEEeecccccCCcc----ccc-ccccceeeccccchhhhhhhh
Q 039152 188 ELEVNDANTLP--RGGLFLEKPERIDLDANVRLKDQD----TVQ-LWGIEELSLAELLDHIKNFVN 246 (259)
Q Consensus 188 ~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~~~~ 246 (259)
++++|.++.+| ..+..+++|+.|++++|.....+. .+. +++|+.|++++| ....+|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR--EDQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET--TSCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC--Chhhccc
Confidence 99999999876 677899999999999996655544 333 999999999999 6666664
No 108
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=5e-14 Score=127.45 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=38.7
Q ss_pred CCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhhhhhhcccccccC
Q 039152 182 PNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLKY 258 (259)
Q Consensus 182 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~~ 258 (259)
++|+.|++++|.++.+|. .+++|+.|++++|.....+. .+++|+.|++++| .+..+|..+ ..+++|+.
T Consensus 221 ~~L~~L~Ls~N~L~~lp~---~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N--~L~~lp~~l--~~l~~L~~ 288 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLPV---LPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRN--QLTRLPESL--IHLSSETT 288 (622)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS--CCCSCCGGG--GGSCTTCE
T ss_pred CCCCEEEccCCccCcCCC---CCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCC--CCCcCCHHH--hhccccCE
Confidence 455555555555555552 34566666666663333333 4567777777777 555666543 35666654
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.55 E-value=4.6e-14 Score=123.43 Aligned_cols=136 Identities=21% Similarity=0.175 Sum_probs=80.8
Q ss_pred CCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCC
Q 039152 91 LQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHC 169 (259)
Q Consensus 91 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~ 169 (259)
++|++|++++|.++.+| .++.+++|++|++++|.++. |.. ..+|++|++++|.+..+| +++.+++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 46666666666666666 36667777777777776665 322 236677777777666665 4667777777777764
Q ss_pred CCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152 170 SNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL 237 (259)
Q Consensus 170 ~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (259)
. +..+|. ..++|++|++++|.++.+|. ++.+++|+.|++++|.....+. .+++|+.|++++|
T Consensus 206 ~-l~~l~~--~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N 267 (454)
T 1jl5_A 206 S-LKKLPD--LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDN 267 (454)
T ss_dssp C-CSSCCC--CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSS
T ss_pred c-CCcCCC--CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc--cccccCEEECCCC
Confidence 3 333443 23466666666666666664 5666667777776663332221 1244455555444
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.1e-15 Score=137.10 Aligned_cols=174 Identities=16% Similarity=0.134 Sum_probs=109.9
Q ss_pred ccccHHHHhCCCCccEEEcCCCC-------------CC-CCchhhcCCCCCcEEE-ecCCCCCC-c------hhhhCC--
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMN-------------LL-SLPSSIGLLTNLHTLC-LYSCILKD-M------AVISDL-- 135 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~-------------~~-~lp~~i~~l~~L~~L~-l~~~~~~~-~------~~~~~l-- 135 (259)
..+|..+ +.+++|+.|++++|. .. ..|..++.+++|+.|+ ++.|.+.. + ..+..+
T Consensus 362 ~~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~ 440 (567)
T 1dce_A 362 TVLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440 (567)
T ss_dssp HHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCc
Confidence 5788875 678888888886653 22 3456677777777776 45443322 0 011111
Q ss_pred CCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeec
Q 039152 136 KKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDA 214 (259)
Q Consensus 136 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~ 214 (259)
..|++|++++|.++.+|. ++.+++|+.|++++| .+..+|.. +.+++|+.|++++|.++.+| .++.+++|+.|++++
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred cCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 247777777777777775 777777777777774 34466655 67777777777777777777 667777777777777
Q ss_pred ccccCC--ccccc-ccccceeeccccchhhhhhhhhhh--hcccccccCC
Q 039152 215 NVRLKD--QDTVQ-LWGIEELSLAELLDHIKNFVNKLV--KVGSSQLKYL 259 (259)
Q Consensus 215 ~~~~~~--~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~--~~~l~~L~~L 259 (259)
|..... +..+. +++|+.|++++| .+..+|+... ...+|+|+.|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N--~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGN--SLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTS--GGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCC--cCCCCccHHHHHHHHCcccCcc
Confidence 744333 34443 777777777777 5555543211 2346666543
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=6.4e-14 Score=125.41 Aligned_cols=156 Identities=22% Similarity=0.234 Sum_probs=127.8
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL 158 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l 158 (259)
..+|..+ +++|++|++++|.++.+| ..+++|++|++++|.++. |. ++. +|++|++++|.+..+|. .+
T Consensus 72 ~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l 139 (571)
T 3cvr_A 72 SSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LP 139 (571)
T ss_dssp SCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CC
T ss_pred CccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cC
Confidence 3467654 378999999999999999 457999999999999998 55 555 99999999999999988 68
Q ss_pred CcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCccccccccc-------ce
Q 039152 159 TQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGI-------EE 231 (259)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L-------~~ 231 (259)
++|+.|++++| .+..+|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.....+. +. .+| +.
T Consensus 140 ~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~-~~L~~~~~~L~~ 211 (571)
T 3cvr_A 140 ALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VP-VRNHHSEETEIF 211 (571)
T ss_dssp TTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC---------CCEE
T ss_pred ccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HH-HhhhcccccceE
Confidence 99999999995 4566886 78999999999999999998 55 999999999995555555 22 367 99
Q ss_pred eeccccchhhhhhhhhhhhcccccccCC
Q 039152 232 LSLAELLDHIKNFVNKLVKVGSSQLKYL 259 (259)
Q Consensus 232 L~l~~~~~~~~~~~~~l~~~~l~~L~~L 259 (259)
|++++| .+..+|..+. .+++|++|
T Consensus 212 L~Ls~N--~l~~lp~~l~--~l~~L~~L 235 (571)
T 3cvr_A 212 FRCREN--RITHIPENIL--SLDPTCTI 235 (571)
T ss_dssp EECCSS--CCCCCCGGGG--GSCTTEEE
T ss_pred EecCCC--cceecCHHHh--cCCCCCEE
Confidence 999999 8888998763 47777653
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=2.6e-14 Score=128.13 Aligned_cols=151 Identities=18% Similarity=0.161 Sum_probs=115.2
Q ss_pred cHHHHhCCCCccEEE-cCCCCCCCCch------hhcC--CCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccch
Q 039152 83 PQNLLRSMLQVRVLD-LTDMNLLSLPS------SIGL--LTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPV 153 (259)
Q Consensus 83 ~~~~~~~l~~L~~L~-l~~~~~~~lp~------~i~~--l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~ 153 (259)
++..++.+++|+.|+ ++.+.+..++. .+.. ...|++|++++|.++..+.++.+++|++|++++|.+..+|.
T Consensus 401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~ 480 (567)
T 1dce_A 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP 480 (567)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCG
T ss_pred CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccch
Confidence 344567788888888 55554332221 1111 13589999999999883349999999999999999999999
Q ss_pred hhccCCcCCEEecCCCCCceeeCCCCCCCCCcEEEeeccCCCcc--CCCCcCCCCCCeEEeecccccCCccccc-----c
Q 039152 154 EVGQLTQLRSLDLRHCSNLQVIPLNKHLPNLTSLELEVNDANTL--PRGGLFLEKPERIDLDANVRLKDQDTVQ-----L 226 (259)
Q Consensus 154 ~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~--p~~~~~l~~L~~L~l~~~~~~~~~~~~~-----l 226 (259)
.++.+++|++|++++| .+..+|..+.+++|+.|++++|.++.+ |..++.+++|+.|++++|.....+.... +
T Consensus 481 ~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 481 ALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559 (567)
T ss_dssp GGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred hhhcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence 9999999999999985 555678558899999999999999877 8888899999999999985544433221 7
Q ss_pred cccceeec
Q 039152 227 WGIEELSL 234 (259)
Q Consensus 227 ~~L~~L~l 234 (259)
++|+.|++
T Consensus 560 p~L~~L~l 567 (567)
T 1dce_A 560 PSVSSILT 567 (567)
T ss_dssp TTCSEEEC
T ss_pred cccCccCC
Confidence 88888764
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.7e-14 Score=108.98 Aligned_cols=126 Identities=15% Similarity=0.101 Sum_probs=107.8
Q ss_pred hcCCCCCcEEEecCCCCCCchhhhCCC-CCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcE
Q 039152 110 IGLLTNLHTLCLYSCILKDMAVISDLK-KLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTS 186 (259)
Q Consensus 110 i~~l~~L~~L~l~~~~~~~~~~~~~l~-~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~ 186 (259)
+.++.+|+.|++++|.++..+.+..+. +|++|++++|.+..+ ..+..+++|++|++++| .+..+|.. ..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 567889999999999999855566665 999999999999988 67999999999999995 56677754 68899999
Q ss_pred EEeeccCCCccCC--CCcCCCCCCeEEeecccccCCccc----cc-ccccceeecccc
Q 039152 187 LELEVNDANTLPR--GGLFLEKPERIDLDANVRLKDQDT----VQ-LWGIEELSLAEL 237 (259)
Q Consensus 187 L~l~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~~~~----~~-l~~L~~L~l~~~ 237 (259)
|++++|.++.+|. .+..+++|+.|++++|.....+.. +. +++|+.|+++++
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 9999999999887 778999999999999966555542 33 999999999998
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.52 E-value=1.1e-13 Score=121.12 Aligned_cols=145 Identities=19% Similarity=0.165 Sum_probs=97.2
Q ss_pred CCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCC
Q 039152 90 MLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHC 169 (259)
Q Consensus 90 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~ 169 (259)
+++|++|++++|.+..+|.. .++|++|++++|.+++.+.++.+++|++|++++|+++.+|..+ .+|++|++++|
T Consensus 110 ~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n 183 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN 183 (454)
T ss_dssp CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS
T ss_pred cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC
Confidence 35677777777766655542 1567777777777777335777777777777777777666543 46777777774
Q ss_pred CCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeeccccchhhhhhhh
Q 039152 170 SNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAELLDHIKNFVN 246 (259)
Q Consensus 170 ~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 246 (259)
.+..+|..+++++|+.|++++|.++.+|.. .++|+.|++++|.....+....+++|+.|++++| .+..+|.
T Consensus 184 -~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N--~l~~l~~ 254 (454)
T 1jl5_A 184 -QLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPELQNLPFLTTIYADNN--LLKTLPD 254 (454)
T ss_dssp -CCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS--CCSSCCS
T ss_pred -cCCcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCcccccCCCCCCCEEECCCC--cCCcccc
Confidence 344466557777788888888777777665 3577788888774444454334888888888887 5555543
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=8.6e-15 Score=125.34 Aligned_cols=171 Identities=18% Similarity=0.199 Sum_probs=121.2
Q ss_pred HhCCCCccEEEcCCCCCC----CCchhh-------cCCCCCcEEEecCCCCCC------chhhhCCCCCcEEEecCCCCc
Q 039152 87 LRSMLQVRVLDLTDMNLL----SLPSSI-------GLLTNLHTLCLYSCILKD------MAVISDLKKLEILCLHGSSIY 149 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~----~lp~~i-------~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~i~ 149 (259)
|..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+.. +..+..+++|++|++++|.+.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 457889999999987555 345444 678999999999999876 356788899999999999886
Q ss_pred -----ccchhhccC---------CcCCEEecCCCCCc-eeeCCC----CCCCCCcEEEeeccCCC------ccCCCCcCC
Q 039152 150 -----QLPVEVGQL---------TQLRSLDLRHCSNL-QVIPLN----KHLPNLTSLELEVNDAN------TLPRGGLFL 204 (259)
Q Consensus 150 -----~lp~~i~~l---------~~L~~L~l~~~~~~-~~lp~~----~~l~~L~~L~l~~~~~~------~~p~~~~~l 204 (259)
.++..+..+ ++|++|++++|... ..++.. ..+++|++|++++|.++ -+|..+..+
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~ 215 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence 233344444 89999999986543 233311 46789999999999987 345477889
Q ss_pred CCCCeEEeeccccc-----CCccccc-ccccceeeccccchhhhhh-----hhhhhhcccccccCC
Q 039152 205 EKPERIDLDANVRL-----KDQDTVQ-LWGIEELSLAELLDHIKNF-----VNKLVKVGSSQLKYL 259 (259)
Q Consensus 205 ~~L~~L~l~~~~~~-----~~~~~~~-l~~L~~L~l~~~~~~~~~~-----~~~l~~~~l~~L~~L 259 (259)
++|+.|++++|... ..+..+. +++|+.|++++| .+... +..+....+++|++|
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~~~L~~L 279 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC--LLSARGAAAVVDAFSKLENIGLQTL 279 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC--CCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC--CCchhhHHHHHHHHhhccCCCeEEE
Confidence 99999999988542 1233333 889999999998 44433 443321336777653
No 116
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.51 E-value=8.8e-14 Score=125.83 Aligned_cols=132 Identities=22% Similarity=0.214 Sum_probs=78.0
Q ss_pred CCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecC
Q 039152 89 SMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLR 167 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 167 (259)
.+++|++|++++|.++.+|. .+++|++|++++|.++. +. .+.+|++|++++|.+..+|.. +++|++|+++
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVS 149 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECc
Confidence 35566666666666666665 45666666666666666 33 456666666666666666653 3666777777
Q ss_pred CCCCceeeCCCCCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCCcccccccccceeecccc
Q 039152 168 HCSNLQVIPLNKHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAEL 237 (259)
Q Consensus 168 ~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (259)
+| .+..+|. .+++|+.|++++|.++.+| ..+++|+.|++++|.....+.. +++|+.|++++|
T Consensus 150 ~N-~l~~l~~--~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N 211 (622)
T 3g06_A 150 DN-QLASLPA--LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNN 211 (622)
T ss_dssp SS-CCSCCCC--CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSS
T ss_pred CC-cCCCcCC--ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCC
Confidence 64 3444543 4556666666666666666 2357777888777743332221 344455555444
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=2.7e-13 Score=103.42 Aligned_cols=124 Identities=28% Similarity=0.312 Sum_probs=98.6
Q ss_pred ccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCC
Q 039152 93 VRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHC 169 (259)
Q Consensus 93 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~ 169 (259)
.+.++++++.+..+|..+. .+|++|++++|.++. + ..++.+++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4678888888888886553 688999999998888 4 4568889999999999988888765 678899999999885
Q ss_pred CCceeeCCC--CCCCCCcEEEeeccCCCccCCCC-cCCCCCCeEEeecccccC
Q 039152 170 SNLQVIPLN--KHLPNLTSLELEVNDANTLPRGG-LFLEKPERIDLDANVRLK 219 (259)
Q Consensus 170 ~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~ 219 (259)
.+..+|.. ..+++|++|++++|.++.+|..+ ..+++|+.|++.+|....
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 -KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 45556553 67889999999999998888764 578899999999884433
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=3.2e-14 Score=131.23 Aligned_cols=113 Identities=25% Similarity=0.321 Sum_probs=71.7
Q ss_pred ccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCc
Q 039152 82 IPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQ 160 (259)
Q Consensus 82 l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~ 160 (259)
++++.|..++.|+.|++++|.+..+|..+..+++|++|+|++|.++. |..++.+++|++|+|++|.++.+|..++.+++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 34445566667777777777666666666666777777777776666 56666677777777777766666666777777
Q ss_pred CCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC
Q 039152 161 LRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN 195 (259)
Q Consensus 161 L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~ 195 (259)
|++|++++| .+..+|.. +.+++|+.|++++|.++
T Consensus 295 L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCC-CCCccChhhhcCCCccEEeCCCCccC
Confidence 777777664 44566654 66667777777776664
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=4e-14 Score=130.54 Aligned_cols=118 Identities=25% Similarity=0.201 Sum_probs=97.9
Q ss_pred CCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC
Q 039152 100 DMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN 178 (259)
Q Consensus 100 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 178 (259)
.+.+...|..+..+.+|+.|+|++|.+.. +..+..+++|++|+|++|.+..+|..++.+++|++|++++|. +..+|..
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~ 288 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE 288 (727)
T ss_dssp ------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS
T ss_pred ccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh
Confidence 34444457778899999999999999998 788889999999999999999999999999999999999965 5588876
Q ss_pred -CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeeccccc
Q 039152 179 -KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRL 218 (259)
Q Consensus 179 -~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 218 (259)
+.+++|++|++++|.++.+|..++.+++|+.|++++|...
T Consensus 289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 8899999999999999999999999999999999988443
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=1.6e-14 Score=107.02 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=91.4
Q ss_pred CCCCCcEEEecCCCCC--C-chhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCC-CCCCCCcEE
Q 039152 112 LLTNLHTLCLYSCILK--D-MAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSL 187 (259)
Q Consensus 112 ~l~~L~~L~l~~~~~~--~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L 187 (259)
..++|+.|++++|.+. . |..++.+++|++|++++|.+..+ ..++.+++|++|++++|.....+|.. ..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3467888999999888 3 66678888899999998888877 66888888888888886544334443 458888888
Q ss_pred EeeccCCCccC--CCCcCCCCCCeEEeecccccCCcc----ccc-ccccceeecc
Q 039152 188 ELEVNDANTLP--RGGLFLEKPERIDLDANVRLKDQD----TVQ-LWGIEELSLA 235 (259)
Q Consensus 188 ~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~~~----~~~-l~~L~~L~l~ 235 (259)
++++|.++.+| ..+..+++|+.|++++|.....+. .+. +++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888887654 667788888888888885444433 222 7788887765
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=1.4e-13 Score=106.59 Aligned_cols=113 Identities=29% Similarity=0.316 Sum_probs=96.7
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchh--hcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSS--IGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE- 154 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~- 154 (259)
..+|..++ +++++|++++|.+..++.. ++.+++|++|++++|.++. +..++.+++|++|++++|++..++..
T Consensus 21 ~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 21 KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH
Confidence 45666543 3899999999999987753 8999999999999999998 57899999999999999999977665
Q ss_pred hccCCcCCEEecCCCCCceeeCCC-CCCCCCcEEEeeccCCC
Q 039152 155 VGQLTQLRSLDLRHCSNLQVIPLN-KHLPNLTSLELEVNDAN 195 (259)
Q Consensus 155 i~~l~~L~~L~l~~~~~~~~lp~~-~~l~~L~~L~l~~~~~~ 195 (259)
+..+++|++|++++|......|.. ..+++|++|++++|.+.
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 889999999999996555544544 78999999999999986
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=3.4e-14 Score=120.64 Aligned_cols=158 Identities=16% Similarity=0.075 Sum_probs=96.1
Q ss_pred HHHhCCC-CccEEEcCCCCCCCC-chhhcCC-----CCCcEEEecCCCCCC--chh----hhCC-CCCcEEEecCCCCcc
Q 039152 85 NLLRSML-QVRVLDLTDMNLLSL-PSSIGLL-----TNLHTLCLYSCILKD--MAV----ISDL-KKLEILCLHGSSIYQ 150 (259)
Q Consensus 85 ~~~~~l~-~L~~L~l~~~~~~~l-p~~i~~l-----~~L~~L~l~~~~~~~--~~~----~~~l-~~L~~L~l~~~~i~~ 150 (259)
..|.+++ +|++|++++|.+... +..+..+ ++|++|++++|.++. +.. +..+ ++|++|++++|.+..
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 4556777 788888888877743 4445554 778888888888765 232 4444 778888888887775
Q ss_pred cchh-----hcc-CCcCCEEecCCCCCce----eeCCC-CCC-CCCcEEEeeccCCCccCC-----CCcCC-CCCCeEEe
Q 039152 151 LPVE-----VGQ-LTQLRSLDLRHCSNLQ----VIPLN-KHL-PNLTSLELEVNDANTLPR-----GGLFL-EKPERIDL 212 (259)
Q Consensus 151 lp~~-----i~~-l~~L~~L~l~~~~~~~----~lp~~-~~l-~~L~~L~l~~~~~~~~p~-----~~~~l-~~L~~L~l 212 (259)
.+.. +.. .++|++|++++|.... .++.. ..+ ++|++|++++|.++..+. .+..+ ++|+.|++
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence 4432 223 2578888888754321 11111 233 378888888887754332 23344 48888888
Q ss_pred ecccccCC-----ccccc--ccccceeeccccchhhhhh
Q 039152 213 DANVRLKD-----QDTVQ--LWGIEELSLAELLDHIKNF 244 (259)
Q Consensus 213 ~~~~~~~~-----~~~~~--l~~L~~L~l~~~~~~~~~~ 244 (259)
++|..... +..+. .++|+.|++++| .+...
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~~~ 240 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLN--CLHGP 240 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS--CCCCC
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECcCC--CCCcH
Confidence 88744332 11111 347888888888 44443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=4e-13 Score=104.04 Aligned_cols=112 Identities=21% Similarity=0.290 Sum_probs=98.1
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccch-hhc
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPV-EVG 156 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~-~i~ 156 (259)
..+|..+ .+++++|++++|.++.+|..+..+++|++|++++|.++. +..+..+++|++|++++|.+..+|. .+.
T Consensus 23 ~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~ 99 (193)
T 2wfh_A 23 KVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99 (193)
T ss_dssp SSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC
Confidence 4566654 358999999999999999999999999999999999998 4679999999999999999998876 589
Q ss_pred cCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCC
Q 039152 157 QLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDAN 195 (259)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~ 195 (259)
.+++|++|++++ +.+..+|.. ..+++|+.|++++|.+.
T Consensus 100 ~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 100 GLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999999999999 456677764 78999999999999875
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=3.2e-13 Score=114.12 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=101.0
Q ss_pred cccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecC-CCCCC-c-hhhhCC-CCCcEEEecCCCCcccchhh
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYS-CILKD-M-AVISDL-KKLEILCLHGSSIYQLPVEV 155 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~-~~~~~-~-~~~~~l-~~L~~L~l~~~~i~~lp~~i 155 (259)
.++++.|..+++|++|++++|.+..+|. .+....++.+|++.+ +.+.. + ..+..+ ..+++|++++|+++.+|..+
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence 3444445555555555555555554433 233344445555533 23333 2 233444 35778888888888888877
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeecccccCC-ccccccccccee
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANVRLKD-QDTVQLWGIEEL 232 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L 232 (259)
....+|+.+++.+|+.++.+|.. ..+++|+.|++++|.++.+|.. .+.+|+.|.+.++...+. |..-.+++|+.+
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l 251 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEA 251 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhC
Confidence 77778888888877888888875 6788888888888888888865 467778888777755554 333338888888
Q ss_pred ecccc
Q 039152 233 SLAEL 237 (259)
Q Consensus 233 ~l~~~ 237 (259)
++.+.
T Consensus 252 ~l~~~ 256 (350)
T 4ay9_X 252 SLTYP 256 (350)
T ss_dssp ECSCH
T ss_pred cCCCC
Confidence 87654
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=7.2e-16 Score=120.02 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=59.8
Q ss_pred CCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchhhccCCcCCEEecCCCCCceeeCCCCCCCCC
Q 039152 105 SLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLNKHLPNL 184 (259)
Q Consensus 105 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~l~~L 184 (259)
.+|..++.+++|++|++++|.+...+.++.+++|++|++++|.+..+|..+..+++|++|++++| .+..+|....+++|
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~~l~~L 117 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSGIEKLVNL 117 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHHHHHHHHS
T ss_pred hhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCccccCCCC
Confidence 34445555556666666655555522555555666666666555555555555555666666553 23333322445556
Q ss_pred cEEEeeccCCCccCC--CCcCCCCCCeEEeecc
Q 039152 185 TSLELEVNDANTLPR--GGLFLEKPERIDLDAN 215 (259)
Q Consensus 185 ~~L~l~~~~~~~~p~--~~~~l~~L~~L~l~~~ 215 (259)
++|++++|.++.+|. .+..+++|+.|++.+|
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 666666666554443 3455666666666655
No 126
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=8.9e-13 Score=100.38 Aligned_cols=105 Identities=27% Similarity=0.376 Sum_probs=83.2
Q ss_pred ccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCC
Q 039152 93 VRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHC 169 (259)
Q Consensus 93 L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~ 169 (259)
-+.++++++.+..+|..+. .+|++|++++|.++. +..++.+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3678889988888888664 788999999999888 45788889999999999988888776 578888888888884
Q ss_pred CCceeeCCC--CCCCCCcEEEeeccCCCccCCC
Q 039152 170 SNLQVIPLN--KHLPNLTSLELEVNDANTLPRG 200 (259)
Q Consensus 170 ~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~ 200 (259)
.+..+|.. ..+++|++|++++|.+...|..
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 45566653 6778888888888887766553
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.2e-15 Score=117.21 Aligned_cols=128 Identities=20% Similarity=0.184 Sum_probs=106.6
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchhhccC
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVEVGQL 158 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l 158 (259)
..+|.. |..+++|++|++++|.+..+| .+..+++|++|++++|.++. |..+..+++|++|++++|.+..+| .++.+
T Consensus 38 ~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 38 EKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred hhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 344554 679999999999999999988 79999999999999999998 777778899999999999999887 68999
Q ss_pred CcCCEEecCCCCCceeeCC---CCCCCCCcEEEeeccCCCcc-CCC----------CcCCCCCCeEE
Q 039152 159 TQLRSLDLRHCSNLQVIPL---NKHLPNLTSLELEVNDANTL-PRG----------GLFLEKPERID 211 (259)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~---~~~l~~L~~L~l~~~~~~~~-p~~----------~~~l~~L~~L~ 211 (259)
++|++|++++|. +..++. ...+++|++|++++|.++.. |.. +..+++|+.|+
T Consensus 115 ~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 115 VNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999999954 444443 27899999999999998644 332 55777777776
No 128
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=1.9e-12 Score=98.13 Aligned_cols=105 Identities=29% Similarity=0.352 Sum_probs=82.5
Q ss_pred CccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCC
Q 039152 92 QVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRH 168 (259)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~ 168 (259)
..+.++++++.++.+|..+. .+|++|++++|.++. +..+..+++|++|++++|+++.+|.. +..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35788999999988887663 788999999999888 46688889999999999988888776 57888888888888
Q ss_pred CCCceeeCCC--CCCCCCcEEEeeccCCCccCC
Q 039152 169 CSNLQVIPLN--KHLPNLTSLELEVNDANTLPR 199 (259)
Q Consensus 169 ~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~ 199 (259)
| .+..+|.. ..+++|++|++++|.+...+.
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 4 45556553 677888888888887764443
No 129
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=5.5e-14 Score=122.80 Aligned_cols=149 Identities=18% Similarity=0.029 Sum_probs=93.2
Q ss_pred CCCCccEEEcCCCCCCC-----CchhhcCCCCCcEEEecCCCCCC--c----hhh-hCCCCCcEEEecCCCCcc-----c
Q 039152 89 SMLQVRVLDLTDMNLLS-----LPSSIGLLTNLHTLCLYSCILKD--M----AVI-SDLKKLEILCLHGSSIYQ-----L 151 (259)
Q Consensus 89 ~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~--~----~~~-~~l~~L~~L~l~~~~i~~-----l 151 (259)
..++|++|++++|.++. ++..+..+++|++|++++|.+.. . +.+ ..+++|++|++++|.+.. +
T Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 35577777777777664 45566677788888888877665 1 222 246788888888887774 6
Q ss_pred chhhccCCcCCEEecCCCCCceeeCCC------CCCCCCcEEEeeccCCCc-----cCCCCcCCCCCCeEEeecccccCC
Q 039152 152 PVEVGQLTQLRSLDLRHCSNLQVIPLN------KHLPNLTSLELEVNDANT-----LPRGGLFLEKPERIDLDANVRLKD 220 (259)
Q Consensus 152 p~~i~~l~~L~~L~l~~~~~~~~lp~~------~~l~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~ 220 (259)
+..+..+++|++|++++|......+.. ...++|++|++++|.++. +|..+..+++|+.|++++|.....
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 677777888888888875432111110 233577777777777653 344555667777777777632222
Q ss_pred -ccccc------ccccceeecccc
Q 039152 221 -QDTVQ------LWGIEELSLAEL 237 (259)
Q Consensus 221 -~~~~~------l~~L~~L~l~~~ 237 (259)
...+. .++|+.|++++|
T Consensus 357 ~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 357 GVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTS
T ss_pred cHHHHHHHHcCCCCceEEEECCCC
Confidence 11111 346777777777
No 130
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=4.8e-14 Score=123.17 Aligned_cols=151 Identities=21% Similarity=0.185 Sum_probs=72.3
Q ss_pred HhCCCCccEEEcCCCCCCC-Cchhh-cCCC----CCcEEEecCCCCCC------chhhhCCCCCcEEEecCCCCccc-ch
Q 039152 87 LRSMLQVRVLDLTDMNLLS-LPSSI-GLLT----NLHTLCLYSCILKD------MAVISDLKKLEILCLHGSSIYQL-PV 153 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~~-lp~~i-~~l~----~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~i~~l-p~ 153 (259)
+..+++|++|++++|.+.. .+..+ ..+. +|++|++++|.+.. +..+..+++|++|++++|.+... +.
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence 3455566666666655542 11111 1233 46666666665552 34455556666666666655411 11
Q ss_pred hhc-----cCCcCCEEecCCCCCceee----CCC-CCCCCCcEEEeeccCCCcc-CCCCc-----CCCCCCeEEeecccc
Q 039152 154 EVG-----QLTQLRSLDLRHCSNLQVI----PLN-KHLPNLTSLELEVNDANTL-PRGGL-----FLEKPERIDLDANVR 217 (259)
Q Consensus 154 ~i~-----~l~~L~~L~l~~~~~~~~l----p~~-~~l~~L~~L~l~~~~~~~~-p~~~~-----~l~~L~~L~l~~~~~ 217 (259)
.+. ..++|++|++++|...... +.. ..+++|++|++++|.++.. +..+. ..++|+.|++++|..
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 111 1344666666654322111 110 3445666666666665421 11111 244666777766633
Q ss_pred cCC-----ccccc-ccccceeecccc
Q 039152 218 LKD-----QDTVQ-LWGIEELSLAEL 237 (259)
Q Consensus 218 ~~~-----~~~~~-l~~L~~L~l~~~ 237 (259)
... +..+. +++|+.|++++|
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCC
Confidence 322 11111 677777777777
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=1.3e-13 Score=116.98 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=35.4
Q ss_pred CCccEEEcCCCCCCCC-chh----hcCC-CCCcEEEecCCCCCC--chh----hhC-CCCCcEEEecCCCCc-----ccc
Q 039152 91 LQVRVLDLTDMNLLSL-PSS----IGLL-TNLHTLCLYSCILKD--MAV----ISD-LKKLEILCLHGSSIY-----QLP 152 (259)
Q Consensus 91 ~~L~~L~l~~~~~~~l-p~~----i~~l-~~L~~L~l~~~~~~~--~~~----~~~-l~~L~~L~l~~~~i~-----~lp 152 (259)
++|++|++++|.++.. +.. +..+ ++|++|++++|.++. +.. +.. .++|++|++++|.+. .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 5555555555555422 221 2222 455555555555544 112 222 135555555555444 223
Q ss_pred hhhccCC-cCCEEecCCC
Q 039152 153 VEVGQLT-QLRSLDLRHC 169 (259)
Q Consensus 153 ~~i~~l~-~L~~L~l~~~ 169 (259)
..+..++ +|++|++++|
T Consensus 160 ~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHTSCTTCCEEECTTS
T ss_pred HHHhcCCccccEeeecCC
Confidence 3333333 5555555553
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=6.2e-12 Score=95.77 Aligned_cols=114 Identities=30% Similarity=0.406 Sum_probs=96.1
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCcccchh-h
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIYQLPVE-V 155 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i 155 (259)
..+|..+ .++|+.|++++|.+..+|. .++.+++|++|++++|.++. + ..++.+++|++|++++|.+..+|.. +
T Consensus 20 ~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 96 (177)
T 2o6r_A 20 TSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF 96 (177)
T ss_dssp SSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHh
Confidence 4456543 4689999999999998766 46899999999999999998 4 4578999999999999999988776 6
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCcc
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTL 197 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~ 197 (259)
..+++|++|++++| .+..+|.. ..+++|++|++++|.+...
T Consensus 97 ~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 97 DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 89999999999995 55667765 6789999999999988643
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.28 E-value=4e-12 Score=114.39 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=85.0
Q ss_pred hCCCCccEEEcCCCCCCC-----CchhhcCCCCCcEEEecCCCCCC------chhhhCCCCCcEEEecCCCCcccchhhc
Q 039152 88 RSMLQVRVLDLTDMNLLS-----LPSSIGLLTNLHTLCLYSCILKD------MAVISDLKKLEILCLHGSSIYQLPVEVG 156 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~i~~lp~~i~ 156 (259)
.++++|++|++++|.+.. ++.....+++|++|++++|.+.. +..+..+++|++|++++|.+..+|..+.
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 467888888888887652 33345567888888888888762 3445678889999998888888887788
Q ss_pred cCCcCCEEecCCCCCceeeC---CC-CCCCCCcEEEeeccCCCccCCCCcCCCCCCeEEeeccc
Q 039152 157 QLTQLRSLDLRHCSNLQVIP---LN-KHLPNLTSLELEVNDANTLPRGGLFLEKPERIDLDANV 216 (259)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp---~~-~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~ 216 (259)
.+++|+.|+++.+......+ .. ..+++|+.|+++++....+|..+..+++|+.|++++|.
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 88888888887532211100 01 45556666666555444555555556666666666554
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=3.6e-11 Score=91.39 Aligned_cols=102 Identities=26% Similarity=0.265 Sum_probs=87.4
Q ss_pred CcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeec
Q 039152 116 LHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEV 191 (259)
Q Consensus 116 L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~ 191 (259)
-+.++++++.+.. |..+. ++|++|++++|.+..+ |..+..+++|++|++++| .+..+|.. .++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 4789999999988 66554 8999999999999988 456899999999999995 66777765 6899999999999
Q ss_pred cCCCccCCC-CcCCCCCCeEEeecccccCC
Q 039152 192 NDANTLPRG-GLFLEKPERIDLDANVRLKD 220 (259)
Q Consensus 192 ~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~ 220 (259)
|.++.+|.. +..+++|+.|++.+|.....
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999998876 77899999999999854444
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.24 E-value=4.6e-11 Score=90.43 Aligned_cols=103 Identities=30% Similarity=0.282 Sum_probs=87.2
Q ss_pred CCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCccc-chhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEee
Q 039152 115 NLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQL-PVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190 (259)
Q Consensus 115 ~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~ 190 (259)
..+.+++++|.++. |..+. ++|++|++++|.++.+ |..+..+++|++|++++| .+..+|.. ..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 46889999999998 65553 8999999999999988 455899999999999995 56677765 789999999999
Q ss_pred ccCCCccCCC-CcCCCCCCeEEeecccccCC
Q 039152 191 VNDANTLPRG-GLFLEKPERIDLDANVRLKD 220 (259)
Q Consensus 191 ~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~ 220 (259)
+|.++.+|.. +..+++|+.|++++|.....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999988875 67899999999999844433
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=2.2e-11 Score=101.90 Aligned_cols=174 Identities=15% Similarity=0.111 Sum_probs=124.9
Q ss_pred ccccHHHHhC--------CCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCC
Q 039152 80 FAIPQNLLRS--------MLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSI 148 (259)
Q Consensus 80 ~~l~~~~~~~--------l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i 148 (259)
..+|+..|.+ +++|+.+.+.. .++.+++ .|.+|.+|+.+++..|.+.. +..+..+.++.++....+..
T Consensus 82 ~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~ 160 (329)
T 3sb4_A 82 NFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA 160 (329)
T ss_dssp TEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH
T ss_pred cccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh
Confidence 4788888888 99999999988 7887765 58889999999999888765 34555555555555433100
Q ss_pred -------c--------------------ccchh---------------------------h-ccCCcCCEEecCCCCCce
Q 039152 149 -------Y--------------------QLPVE---------------------------V-GQLTQLRSLDLRHCSNLQ 173 (259)
Q Consensus 149 -------~--------------------~lp~~---------------------------i-~~l~~L~~L~l~~~~~~~ 173 (259)
. .++.. + ..+++|+.+++++ +.+.
T Consensus 161 ~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~ 239 (329)
T 3sb4_A 161 YRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK-TNAT 239 (329)
T ss_dssp HHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCC
T ss_pred hhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcc
Confidence 0 01110 0 1278899999997 4577
Q ss_pred eeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCC-eEEeecccccCC-cccccccccceeeccccchhhhhhhhhh
Q 039152 174 VIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPE-RIDLDANVRLKD-QDTVQLWGIEELSLAELLDHIKNFVNKL 248 (259)
Q Consensus 174 ~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~-~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l 248 (259)
.+|.. .++++|+.+++..| ++.++.. +.++++|+ .+.+......-. .....+++|+.+++..+ .+..++...
T Consensus 240 ~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n--~i~~I~~~a 316 (329)
T 3sb4_A 240 TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGD--KITTLGDEL 316 (329)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSS--CCCEECTTT
T ss_pred eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCCC--ccCccchhh
Confidence 88876 88899999999987 8777765 45888999 999988533332 33334999999999877 788888765
Q ss_pred hhcccccccCC
Q 039152 249 VKVGSSQLKYL 259 (259)
Q Consensus 249 ~~~~l~~L~~L 259 (259)
+.++++|+.+
T Consensus 317 -F~~~~~L~~l 326 (329)
T 3sb4_A 317 -FGNGVPSKLI 326 (329)
T ss_dssp -TCTTCCCCEE
T ss_pred -hcCCcchhhh
Confidence 7788888753
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=3.3e-10 Score=95.29 Aligned_cols=97 Identities=21% Similarity=0.142 Sum_probs=43.6
Q ss_pred EcCCC-CCCCCchhhcCCCCCcEEEecC-CCCCC-c-hhhhCCCCCcEEEecCCCCcccch-hhccCCcCCEEecCCCCC
Q 039152 97 DLTDM-NLLSLPSSIGLLTNLHTLCLYS-CILKD-M-AVISDLKKLEILCLHGSSIYQLPV-EVGQLTQLRSLDLRHCSN 171 (259)
Q Consensus 97 ~l~~~-~~~~lp~~i~~l~~L~~L~l~~-~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~ 171 (259)
+.+++ .++.+|. ++.+.+|++|+|++ |.++. + ..++.+++|++|+|++|++..+|+ .+..+++|+.|++++ +.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NA 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-Cc
Confidence 44444 4444554 44455555555543 44444 2 334445555555555555544433 244455555555554 23
Q ss_pred ceeeCCC-CCCCCCcEEEeeccCCC
Q 039152 172 LQVIPLN-KHLPNLTSLELEVNDAN 195 (259)
Q Consensus 172 ~~~lp~~-~~l~~L~~L~l~~~~~~ 195 (259)
+..+|.. .....|+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCcc
Confidence 3333332 11112555555555443
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.09 E-value=4.6e-11 Score=107.44 Aligned_cols=127 Identities=16% Similarity=0.135 Sum_probs=63.4
Q ss_pred HhCCCCccEEEcCCCCCC-----CCchhhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEe-----------------
Q 039152 87 LRSMLQVRVLDLTDMNLL-----SLPSSIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCL----------------- 143 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l----------------- 143 (259)
+..+++|++|++++|.++ .++..+..+++|++|++++|.+.+ +..+..+++|++|++
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 345666666666666554 223334455666666666655544 334444444444444
Q ss_pred ----------cCCCCcccchhhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCC-CccCCCCcCCCCCCeE
Q 039152 144 ----------HGSSIYQLPVEVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDA-NTLPRGGLFLEKPERI 210 (259)
Q Consensus 144 ----------~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~-~~~p~~~~~l~~L~~L 210 (259)
+++....+|..+..+++|++|++++|......... ..+++|+.|+++.+.. ..++.....+++|++|
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 44333445555666777777777776521111100 4556666666652211 1222222345555555
Q ss_pred Eee
Q 039152 211 DLD 213 (259)
Q Consensus 211 ~l~ 213 (259)
++.
T Consensus 348 ~L~ 350 (592)
T 3ogk_B 348 RIE 350 (592)
T ss_dssp EEE
T ss_pred Eee
Confidence 555
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.03 E-value=1.5e-11 Score=110.67 Aligned_cols=82 Identities=23% Similarity=0.251 Sum_probs=37.9
Q ss_pred hCCCCccEEEcCCCCCC-CCchhhc-CCCCCcEEEecCC-CCCC--ch-hhhCCCCCcEEEecCCCCcc-----cchhhc
Q 039152 88 RSMLQVRVLDLTDMNLL-SLPSSIG-LLTNLHTLCLYSC-ILKD--MA-VISDLKKLEILCLHGSSIYQ-----LPVEVG 156 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~-~lp~~i~-~l~~L~~L~l~~~-~~~~--~~-~~~~l~~L~~L~l~~~~i~~-----lp~~i~ 156 (259)
..+++|+.|+++++.++ ..+..+. .+++|++|++++| .+.. .+ ....+++|++|++++|.+.. ++.-..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 34555666666655554 2222332 3555555555555 2332 22 22245555555555554331 111122
Q ss_pred cCCcCCEEecCCC
Q 039152 157 QLTQLRSLDLRHC 169 (259)
Q Consensus 157 ~l~~L~~L~l~~~ 169 (259)
.+++|+.|++++|
T Consensus 182 ~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 182 TYTSLVSLNISCL 194 (594)
T ss_dssp TCCCCCEEECTTC
T ss_pred cCCcCcEEEeccc
Confidence 3445555555554
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.02 E-value=6.9e-11 Score=106.30 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=29.6
Q ss_pred CCCCCcEEEeeccCCCc--cCCCCcCCCCCCeEEeecccccCCcccc-c-ccccceeec
Q 039152 180 HLPNLTSLELEVNDANT--LPRGGLFLEKPERIDLDANVRLKDQDTV-Q-LWGIEELSL 234 (259)
Q Consensus 180 ~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~-l~~L~~L~l 234 (259)
.+++|++|++++|.++. ++..+..+++|+.|++.+|........+ . +++|+.|++
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEE
Confidence 45677777777776542 2222345677777777766221111111 1 566666666
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.00 E-value=1.8e-09 Score=90.71 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=83.7
Q ss_pred cEEEecCC-CCCC-chhhhCCCCCcEEEecC-CCCcccch-hhccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEee
Q 039152 117 HTLCLYSC-ILKD-MAVISDLKKLEILCLHG-SSIYQLPV-EVGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELE 190 (259)
Q Consensus 117 ~~L~l~~~-~~~~-~~~~~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~ 190 (259)
..++.+++ .++. |. ++.+++|++|+|++ |.+..+|. .++.+++|+.|++++| .+..++.. .++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 8888 67 99999999999996 99998875 5999999999999996 56666654 789999999999
Q ss_pred ccCCCccCCCCcCCCCCCeEEeecccc
Q 039152 191 VNDANTLPRGGLFLEKPERIDLDANVR 217 (259)
Q Consensus 191 ~~~~~~~p~~~~~l~~L~~L~l~~~~~ 217 (259)
+|.++.+|..+.....|+.|++.+|..
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCc
Confidence 999999998766555599999998843
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=1.8e-09 Score=90.18 Aligned_cols=152 Identities=12% Similarity=0.023 Sum_probs=112.4
Q ss_pred ccccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecCCCC-------C--------------------C---
Q 039152 80 FAIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYSCIL-------K--------------------D--- 128 (259)
Q Consensus 80 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~-------~--------------------~--- 128 (259)
..|++..|.++++|+.+++..|.+..+++ .|.++.++.++....+.. . .
T Consensus 113 ~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~ 192 (329)
T 3sb4_A 113 KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLED 192 (329)
T ss_dssp CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHH
T ss_pred cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHH
Confidence 57889999999999999999998876544 466666666665443110 0 0
Q ss_pred -------------------------chhh-hCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCCceeeCCC--C
Q 039152 129 -------------------------MAVI-SDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPLN--K 179 (259)
Q Consensus 129 -------------------------~~~~-~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~--~ 179 (259)
...+ ..+++|+++++++|+++.+|.. +..+.+|+.+++.++ +..++.. .
T Consensus 193 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~ 270 (329)
T 3sb4_A 193 EIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS 270 (329)
T ss_dssp HHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT
T ss_pred HHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhh
Confidence 0011 1278999999999999999876 889999999999984 7788876 8
Q ss_pred CCCCCc-EEEeeccCCCccCC-CCcCCCCCCeEEeecccccCCc--ccccccccceeec
Q 039152 180 HLPNLT-SLELEVNDANTLPR-GGLFLEKPERIDLDANVRLKDQ--DTVQLWGIEELSL 234 (259)
Q Consensus 180 ~l~~L~-~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l 234 (259)
++++|+ .+++.. .++.++. .+.++++|+.+++..+.....+ ....+++|+.++.
T Consensus 271 ~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 899999 999988 7777764 4558999999999766333332 3333888888763
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=1e-10 Score=99.51 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=14.5
Q ss_pred CCCcEEEecCCCCc-----ccchhhccCCcCCEEecCC
Q 039152 136 KKLEILCLHGSSIY-----QLPVEVGQLTQLRSLDLRH 168 (259)
Q Consensus 136 ~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~ 168 (259)
++|++|++++|.+. .++..+...++|++|++++
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH 192 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC
Confidence 44444555444443 1233334444444444444
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=2.3e-08 Score=85.89 Aligned_cols=63 Identities=14% Similarity=0.265 Sum_probs=27.9
Q ss_pred cccHHHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEec
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLH 144 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~ 144 (259)
.|+...|.++++|+.+++..|.++.++.....+.+|+.+.+..+ ++. ...+..+.+|+.+++.
T Consensus 170 ~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 170 QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 33444455555555555555544444433222344444444422 222 2334444445544444
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=5.6e-10 Score=94.98 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=106.7
Q ss_pred CCCccEEEcCCCCCCC-----Cchhhc-CCCCCcEEEecCCCCCC--chhh-hCCCCCcEEEecCCCCccc-----chhh
Q 039152 90 MLQVRVLDLTDMNLLS-----LPSSIG-LLTNLHTLCLYSCILKD--MAVI-SDLKKLEILCLHGSSIYQL-----PVEV 155 (259)
Q Consensus 90 l~~L~~L~l~~~~~~~-----lp~~i~-~l~~L~~L~l~~~~~~~--~~~~-~~l~~L~~L~l~~~~i~~l-----p~~i 155 (259)
++.|+.|++++|.++. +...+. ...+|++|++++|.+.. ...+ ..+.+|++|++++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5678999999999873 222222 23689999999999876 3333 3467899999999998732 2222
Q ss_pred -ccCCcCCEEecCCCCCce----eeCCC-CCCCCCcEEEeeccCCCc-----cCCCCcCCCCCCeEEeecccccCCc-cc
Q 039152 156 -GQLTQLRSLDLRHCSNLQ----VIPLN-KHLPNLTSLELEVNDANT-----LPRGGLFLEKPERIDLDANVRLKDQ-DT 223 (259)
Q Consensus 156 -~~l~~L~~L~l~~~~~~~----~lp~~-~~l~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~~-~~ 223 (259)
...++|++|++++|.... .++.. ...++|++|++++|.++. ++..+...++|+.|++++|...... ..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 246789999999975322 11111 467889999999999862 4555667789999999998544321 11
Q ss_pred c-----cccccceeeccccchhhhhh
Q 039152 224 V-----QLWGIEELSLAELLDHIKNF 244 (259)
Q Consensus 224 ~-----~l~~L~~L~l~~~~~~~~~~ 244 (259)
+ ..++|+.|++++| .+...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N--~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFN--ELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTS--SCCHH
T ss_pred HHHHHHhCCCCCEEeccCC--CCCHH
Confidence 1 1689999999999 44443
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.74 E-value=8.8e-08 Score=82.21 Aligned_cols=140 Identities=12% Similarity=0.102 Sum_probs=72.3
Q ss_pred hcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCCceeeCCC--CCCCCCc
Q 039152 110 IGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLT 185 (259)
Q Consensus 110 i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~ 185 (259)
|.+|.+|+.+++..|.++. +.......+|+.+.+.. .++.++.. +..+++|+.+.+.. .+..++.. .+ .+|+
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCS
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCcc
Confidence 4444555555555444444 22222234455555542 24444332 44555555555554 13444443 22 5666
Q ss_pred EEEeeccCCCccCCC-CcCCCCCCeEEeeccccc-------CCcccccccccceeeccccchhhhhhhhhhhhccccccc
Q 039152 186 SLELEVNDANTLPRG-GLFLEKPERIDLDANVRL-------KDQDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQLK 257 (259)
Q Consensus 186 ~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~-------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L~ 257 (259)
.+.+ .+.++.++.. +.++++|+.+.+.++... .......+++|+.+++.+. +..++... +.++++|+
T Consensus 252 ~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~---i~~I~~~a-F~~c~~L~ 326 (401)
T 4fdw_A 252 TVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES---IRILGQGL-LGGNRKVT 326 (401)
T ss_dssp EEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT---CCEECTTT-TTTCCSCC
T ss_pred EEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc---eEEEhhhh-hcCCCCcc
Confidence 6666 3345555443 447788888888776432 1122222778888888643 66666554 56666665
Q ss_pred C
Q 039152 258 Y 258 (259)
Q Consensus 258 ~ 258 (259)
.
T Consensus 327 ~ 327 (401)
T 4fdw_A 327 Q 327 (401)
T ss_dssp E
T ss_pred E
Confidence 4
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=2.6e-08 Score=84.22 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=93.4
Q ss_pred hCCCCccEEEcCCCCCC----------CCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCc-ccchhhc
Q 039152 88 RSMLQVRVLDLTDMNLL----------SLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIY-QLPVEVG 156 (259)
Q Consensus 88 ~~l~~L~~L~l~~~~~~----------~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~ 156 (259)
..+++|+.|.+...... .++..+..+++|+.|++++|.-...+.+ .+++|++|++..+.+. .....+.
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHH
Confidence 35678888888654321 2445567788999999988742222223 3788999999888775 2222333
Q ss_pred --cCCcCCEEecCCC--CC-----cee---eCCCCCCCCCcEEEeeccCCCc-cCCCC---cCCCCCCeEEeecccccCC
Q 039152 157 --QLTQLRSLDLRHC--SN-----LQV---IPLNKHLPNLTSLELEVNDANT-LPRGG---LFLEKPERIDLDANVRLKD 220 (259)
Q Consensus 157 --~l~~L~~L~l~~~--~~-----~~~---lp~~~~l~~L~~L~l~~~~~~~-~p~~~---~~l~~L~~L~l~~~~~~~~ 220 (259)
.+++|++|++..+ .. ... ......+++|++|++.+|.++. .+..+ ..+++|++|+++.|.....
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 6889999987531 11 111 1111467899999999888752 11111 3578899999987743321
Q ss_pred -c----ccc-cccccceeecccc
Q 039152 221 -Q----DTV-QLWGIEELSLAEL 237 (259)
Q Consensus 221 -~----~~~-~l~~L~~L~l~~~ 237 (259)
. ..+ .+++|+.|++++|
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHhhcccCCcceEEECCCC
Confidence 1 111 2788999999888
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=3.7e-08 Score=75.37 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=59.2
Q ss_pred HHHhCCCCccEEEcCCC-CCCC-----CchhhcCCCCCcEEEecCCCCCC------chhhhCCCCCcEEEecCCCCcc--
Q 039152 85 NLLRSMLQVRVLDLTDM-NLLS-----LPSSIGLLTNLHTLCLYSCILKD------MAVISDLKKLEILCLHGSSIYQ-- 150 (259)
Q Consensus 85 ~~~~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~i~~-- 150 (259)
.++...+.|++|++++| .+.. +...+...++|++|++++|.+.+ ...+...++|++|++++|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34567888999999988 7762 45556677888999999888876 2445566788888888888762
Q ss_pred ---cchhhccCCcCCEEec
Q 039152 151 ---LPVEVGQLTQLRSLDL 166 (259)
Q Consensus 151 ---lp~~i~~l~~L~~L~l 166 (259)
+...+...+.|++|++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHhCCCceEEEe
Confidence 4455566666677766
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.49 E-value=6.3e-08 Score=81.92 Aligned_cols=130 Identities=22% Similarity=0.218 Sum_probs=85.4
Q ss_pred HHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCC--chhhh--CCCCCcEEEecCC--C------Ccccc
Q 039152 85 NLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKD--MAVIS--DLKKLEILCLHGS--S------IYQLP 152 (259)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~--~~~~~--~l~~L~~L~l~~~--~------i~~lp 152 (259)
.++..+++|+.|.+.++.-..++. +. +++|+.|.+..|.+.. ...+. .+++|++|+|+.+ . +..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 455778888888888773223444 33 7788888888887765 34444 6888888888531 1 22222
Q ss_pred hhh--ccCCcCCEEecCCCCCceeeCC----CCCCCCCcEEEeeccCCCc-----cCCCCcCCCCCCeEEeeccc
Q 039152 153 VEV--GQLTQLRSLDLRHCSNLQVIPL----NKHLPNLTSLELEVNDANT-----LPRGGLFLEKPERIDLDANV 216 (259)
Q Consensus 153 ~~i--~~l~~L~~L~l~~~~~~~~lp~----~~~l~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~ 216 (259)
..+ ..+++|++|++.+|......+. ...+++|++|+++.|.++. ++..+..+++|+.|+++.|.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 222 2478888888887654322111 1457788888888888763 55555677888888888774
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=1.1e-06 Score=70.93 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=40.7
Q ss_pred CCCCCcEEEecCCCCCCc----hhhhCCCCCcEEEecCCCCcccchhhccCC--cCCEEecCCCCCceeeCCC-------
Q 039152 112 LLTNLHTLCLYSCILKDM----AVISDLKKLEILCLHGSSIYQLPVEVGQLT--QLRSLDLRHCSNLQVIPLN------- 178 (259)
Q Consensus 112 ~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~--~L~~L~l~~~~~~~~lp~~------- 178 (259)
++++|+.|+|++|.++.. ..++.+++|++|+|++|.+..+ ..+..+. +|+.|++.+|.....+|..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 455666666666666551 2344566666666666666544 2233333 5666666665544444321
Q ss_pred -CCCCCCcEEE
Q 039152 179 -KHLPNLTSLE 188 (259)
Q Consensus 179 -~~l~~L~~L~ 188 (259)
..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 4556666654
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=2e-07 Score=71.22 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=42.8
Q ss_pred chhhcCCCCCcEEEecCC-CCCC------chhhhCCCCCcEEEecCCCCc-----ccchhhccCCcCCEEecCCC
Q 039152 107 PSSIGLLTNLHTLCLYSC-ILKD------MAVISDLKKLEILCLHGSSIY-----QLPVEVGQLTQLRSLDLRHC 169 (259)
Q Consensus 107 p~~i~~l~~L~~L~l~~~-~~~~------~~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~ 169 (259)
...+...+.|++|++++| .+.. ...+...++|++|++++|.+. .+...+...+.|++|++++|
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 334566788888898888 7765 245566778888888888776 23444555566666666664
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=1.2e-06 Score=66.04 Aligned_cols=84 Identities=17% Similarity=0.259 Sum_probs=61.1
Q ss_pred CCccEEEcCCCCCCC-CchhhcCCCCCcEEEecCCC-CCC--chhhhCC----CCCcEEEecCCC-Ccc-cchhhccCCc
Q 039152 91 LQVRVLDLTDMNLLS-LPSSIGLLTNLHTLCLYSCI-LKD--MAVISDL----KKLEILCLHGSS-IYQ-LPVEVGQLTQ 160 (259)
Q Consensus 91 ~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~-~~~--~~~~~~l----~~L~~L~l~~~~-i~~-lp~~i~~l~~ 160 (259)
..|+.|+++++.++. --..+..+++|+.|++++|. +++ ...++.+ ++|++|++++|. ++. --..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999988773 23346788899999999986 666 5667764 478999998874 662 1234667888
Q ss_pred CCEEecCCCCCcee
Q 039152 161 LRSLDLRHCSNLQV 174 (259)
Q Consensus 161 L~~L~l~~~~~~~~ 174 (259)
|++|++++|..++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888866553
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=1.1e-06 Score=66.19 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=39.9
Q ss_pred CCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCC-Ccc-cchhhccC----CcCCEEecCCCCCc
Q 039152 114 TNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSS-IYQ-LPVEVGQL----TQLRSLDLRHCSNL 172 (259)
Q Consensus 114 ~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~-i~~-lp~~i~~l----~~L~~L~l~~~~~~ 172 (259)
.+|+.|++++|.+++ ...+..+++|++|+|++|. ++. --..+..+ ++|++|++++|..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 468899999998877 5777888888888888884 551 11224333 35666666666543
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=2.4e-06 Score=68.93 Aligned_cols=79 Identities=23% Similarity=0.205 Sum_probs=51.9
Q ss_pred hCCCCCcEEEecCCCCccc---chhhccCCcCCEEecCCCCCceeeCCCCCCC--CCcEEEeeccCCC-ccCC-------
Q 039152 133 SDLKKLEILCLHGSSIYQL---PVEVGQLTQLRSLDLRHCSNLQVIPLNKHLP--NLTSLELEVNDAN-TLPR------- 199 (259)
Q Consensus 133 ~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~~~l~--~L~~L~l~~~~~~-~~p~------- 199 (259)
..+++|++|+|++|++..+ |..+..+++|+.|++++| .+..+.....+. +|+.|++++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 3577888888888877754 355667888888888874 344433222333 7888888888874 4442
Q ss_pred CCcCCCCCCeEEe
Q 039152 200 GGLFLEKPERIDL 212 (259)
Q Consensus 200 ~~~~l~~L~~L~l 212 (259)
.+..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 2456777777753
No 155
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.69 E-value=6.6e-06 Score=73.42 Aligned_cols=53 Identities=6% Similarity=-0.063 Sum_probs=35.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHhcCccccC----CCcEEccHHHHHHHHHHhhccc
Q 039152 2 GLFQGIKNIKEARARVHTLVNKLKAFCMLLDD----DENIFMHDVACDVAISITSREQ 55 (259)
Q Consensus 2 G~i~~~~~~e~~~~~~~~~i~~L~~~~l~~~~----~~~~~mHdli~dl~~~~~~~e~ 55 (259)
||+.+.......++.++ ++++|+++|||+.. ..+|+|||+|||+|++++.+++
T Consensus 416 G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 416 VDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp C-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred ceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 77765321112344444 78889999999976 2379999999999999988665
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.41 E-value=0.00061 Score=57.93 Aligned_cols=74 Identities=9% Similarity=0.113 Sum_probs=37.7
Q ss_pred CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCC-cccccccccceeeccccchhhhhhhhhhhhcccccc
Q 039152 179 KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKD-QDTVQLWGIEELSLAELLDHIKNFVNKLVKVGSSQL 256 (259)
Q Consensus 179 ~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~l~~L 256 (259)
..+++|+.+++..+ ++.++.. +.++.+|+.+.+..+...-. .....+.+|+.+++... +..+.. ++.++++|
T Consensus 317 ~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~---~~~~~~--~F~~c~~L 390 (394)
T 4fs7_A 317 ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR---LEQYRY--DFEDTTKF 390 (394)
T ss_dssp TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG---GGGGGG--GBCTTCEE
T ss_pred cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC---CEEhhh--eecCCCCC
Confidence 45566666666432 4444433 33566777776655522222 22222677777777544 333322 24456665
Q ss_pred cC
Q 039152 257 KY 258 (259)
Q Consensus 257 ~~ 258 (259)
+.
T Consensus 391 ~~ 392 (394)
T 4fs7_A 391 KW 392 (394)
T ss_dssp EE
T ss_pred cE
Confidence 53
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.38 E-value=0.0019 Score=54.86 Aligned_cols=142 Identities=13% Similarity=0.054 Sum_probs=87.2
Q ss_pred HHHhCCCCccEEEcCCCCCCCCchhhcCCCCCcEEEecCCCCCCchhhhCCCCCcEEEecCCCCcccchh-hccCCcCCE
Q 039152 85 NLLRSMLQVRVLDLTDMNLLSLPSSIGLLTNLHTLCLYSCILKDMAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRS 163 (259)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~ 163 (259)
..|.++..++.+.+..+...--...+..+..++......+.+. ...+..+.+|+.+.+..+ ++.+++. +..+.+|+.
T Consensus 247 ~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 247 SVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp STTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccccceeEEcCCCcceeeccccccccccceeccCceeec-cccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 3344444555555544322212223444555555554433221 234567788888888654 6666554 778899999
Q ss_pred EecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCcccccccccce
Q 039152 164 LDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQDTVQLWGIEE 231 (259)
Q Consensus 164 L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~ 231 (259)
+++.. .+..++.. .++++|+.+.+..+ ++.++.. +.++.+|+.+.+..+...-......+.+|+.
T Consensus 325 i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 325 IDLPY--LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLEQYRYDFEDTTKFKW 392 (394)
T ss_dssp ECCCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEE
T ss_pred EEeCC--cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCEEhhheecCCCCCcE
Confidence 99975 36677665 78899999999766 7666554 4588999999998764333222222566654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.24 E-value=0.0047 Score=52.02 Aligned_cols=120 Identities=14% Similarity=0.169 Sum_probs=69.5
Q ss_pred CCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCCceeeCCC--CCCCCCcE
Q 039152 112 LLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTS 186 (259)
Q Consensus 112 ~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~ 186 (259)
.+..|+.+.+..+ +.. ...+..+..|+.+.+..+ ++.+... +..+.+|+.+.+.. .+..++.. ..+++|+.
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceecccccccccccccc
Confidence 3444555554332 222 244556667777776554 4444433 55667777777754 24455554 67778888
Q ss_pred EEeeccCCCccCCC-CcCCCCCCeEEeecccccCC-cccccccccceeecc
Q 039152 187 LELEVNDANTLPRG-GLFLEKPERIDLDANVRLKD-QDTVQLWGIEELSLA 235 (259)
Q Consensus 187 L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~ 235 (259)
+.+..+.++.++.. +.++.+|+.+.+..+...-. .....+.+|+.+.+-
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEEC
Confidence 88877777766554 34777888888765532222 222236777777664
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.05 E-value=0.0081 Score=50.93 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=41.0
Q ss_pred ccCCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCcc-cccccccce
Q 039152 156 GQLTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQD-TVQLWGIEE 231 (259)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~ 231 (259)
.++..|+.+.+.. .+..++.. .++.+|+.+.+..+ ++.+... +.++.+|+.+.+-.+...-+.. ...+.+|+.
T Consensus 285 ~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 285 MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNN 361 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCE
T ss_pred ccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCE
Confidence 3444444444432 23344443 55666777666543 4444433 3466777777775543322222 222777777
Q ss_pred eecccc
Q 039152 232 LSLAEL 237 (259)
Q Consensus 232 L~l~~~ 237 (259)
+++.++
T Consensus 362 i~~~~~ 367 (394)
T 4gt6_A 362 IEYSGS 367 (394)
T ss_dssp EEESSC
T ss_pred EEECCc
Confidence 777665
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.97 E-value=0.0016 Score=55.32 Aligned_cols=123 Identities=13% Similarity=0.155 Sum_probs=76.4
Q ss_pred hhcCCCCCcEEEecCCCCCC-chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCCCCceeeCCC--CCCCCC
Q 039152 109 SIGLLTNLHTLCLYSCILKD-MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHCSNLQVIPLN--KHLPNL 184 (259)
Q Consensus 109 ~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~--~~l~~L 184 (259)
.+.++..|+.+.+..+...- ...+..+.+|+.+.+. +.+..++.. +..+.+|+.+.+.. .+..+... .++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCC
Confidence 45667778877776543322 4566777888888875 456666655 67788888888875 25566555 778888
Q ss_pred cEEEeeccCCCccCCC-CcCCCCCCeEEeecccccCCcccccccccceeeccc
Q 039152 185 TSLELEVNDANTLPRG-GLFLEKPERIDLDANVRLKDQDTVQLWGIEELSLAE 236 (259)
Q Consensus 185 ~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 236 (259)
+.+.+..+ ++.+... +.++++|+.+.+.++.... .......+|+.+.+..
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-HTCBCCCCC-------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-hhhhccCCCCEEEeCC
Confidence 88888543 6666544 4478889988888763221 2233366677666643
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.81 E-value=0.012 Score=49.54 Aligned_cols=129 Identities=10% Similarity=0.099 Sum_probs=86.5
Q ss_pred ccHHHHhCCCCccEEEcCCCCCCCC-chhhcCCCCCcEEEecCCCCCC--chhhhCCCCCcEEEecCCCCcccchh-hcc
Q 039152 82 IPQNLLRSMLQVRVLDLTDMNLLSL-PSSIGLLTNLHTLCLYSCILKD--MAVISDLKKLEILCLHGSSIYQLPVE-VGQ 157 (259)
Q Consensus 82 l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~ 157 (259)
+....|...+.++.+.+..+ +..+ ...+..+..|+.+.+..+ ++. ...+..+.+|+.+.+.. .+..++.. +..
T Consensus 208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~ 284 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSG 284 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTT
T ss_pred Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccc
Confidence 33444556677777777654 3333 234667788888888665 444 35667788888888854 35566554 677
Q ss_pred CCcCCEEecCCCCCceeeCCC--CCCCCCcEEEeeccCCCccCCC-CcCCCCCCeEEeecc
Q 039152 158 LTQLRSLDLRHCSNLQVIPLN--KHLPNLTSLELEVNDANTLPRG-GLFLEKPERIDLDAN 215 (259)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~--~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~ 215 (259)
+.+|+.+.+.. ..+..++.. .++.+|+.+.+..+ ++.+... +.++.+|+.+.+-.+
T Consensus 285 c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 285 CSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccc-cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 88888888876 456666665 67788888888643 6666554 447888888887654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.67 E-value=0.0035 Score=47.89 Aligned_cols=83 Identities=11% Similarity=0.167 Sum_probs=54.8
Q ss_pred HHhCCCCccEEEcCCC-CCCC-----CchhhcCCCCCcEEEecCCCCCC------chhhhCCCCCcEEEecCCCCc----
Q 039152 86 LLRSMLQVRVLDLTDM-NLLS-----LPSSIGLLTNLHTLCLYSCILKD------MAVISDLKKLEILCLHGSSIY---- 149 (259)
Q Consensus 86 ~~~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~i~---- 149 (259)
+..+-+.|+.|+++++ .+.. +-..+..-..|+.|+|++|.+.+ ...+..-+.|++|+|++|.|.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 4456678888888875 6652 44455666778888888888775 144556677888888888776
Q ss_pred -ccchhhccCCcCCEEecCC
Q 039152 150 -QLPVEVGQLTQLRSLDLRH 168 (259)
Q Consensus 150 -~lp~~i~~l~~L~~L~l~~ 168 (259)
.+.+.+..-+.|+.|++++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHhhCCceeEEECCC
Confidence 3333444444566666654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0059 Score=43.34 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=33.4
Q ss_pred EEEcCCCCCC--CCchhhcCCCCCcEEEecCCCCCC-c-hhhhCCCCCcEEEecCCCCc
Q 039152 95 VLDLTDMNLL--SLPSSIGLLTNLHTLCLYSCILKD-M-AVISDLKKLEILCLHGSSIY 149 (259)
Q Consensus 95 ~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~ 149 (259)
+++-+++.++ .+|..+. .+|++|+|++|.++. + ..+..+++|++|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 6665432 356777777777766 3 44566667777777776554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.01 E-value=0.012 Score=41.66 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=26.6
Q ss_pred EEEecCCCCC--C-chhhhCCCCCcEEEecCCCCcccchh-hccCCcCCEEecCCC
Q 039152 118 TLCLYSCILK--D-MAVISDLKKLEILCLHGSSIYQLPVE-VGQLTQLRSLDLRHC 169 (259)
Q Consensus 118 ~L~l~~~~~~--~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~ 169 (259)
.++.+++.++ . |..+. .+|++|+|++|+|+.+|.+ +..+++|+.|++.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555555555 3 32221 3466666666666666554 445555555555553
No 165
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.27 E-value=0.017 Score=56.11 Aligned_cols=41 Identities=12% Similarity=0.303 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCccccC-CC---cEEccHHHHHHHHHHhhcc
Q 039152 14 RARVHTLVNKLKAFCMLLDD-DE---NIFMHDVACDVAISITSRE 54 (259)
Q Consensus 14 ~~~~~~~i~~L~~~~l~~~~-~~---~~~mHdli~dl~~~~~~~e 54 (259)
++.+.+++++|+++||++.. ++ +|+|||++|++|++.+.+|
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 45567788899999999976 33 4999999999999998765
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.24 E-value=0.034 Score=42.34 Aligned_cols=82 Identities=10% Similarity=0.080 Sum_probs=61.3
Q ss_pred HhCCCCccEEEcCCCCCC-----CCchhhcCCCCCcEEEecCCCCCC--c----hhhhCCCCCcEEEecCCC---Cc---
Q 039152 87 LRSMLQVRVLDLTDMNLL-----SLPSSIGLLTNLHTLCLYSCILKD--M----AVISDLKKLEILCLHGSS---IY--- 149 (259)
Q Consensus 87 ~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~---i~--- 149 (259)
+..-+.|+.|+|++|.+. .+-..+..-+.|+.|+|++|.+.. . ..+..-+.|++|+++++. +.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 356779999999999987 345556677889999999999987 2 455566789999998653 33
Q ss_pred --ccchhhccCCcCCEEecCC
Q 039152 150 --QLPVEVGQLTQLRSLDLRH 168 (259)
Q Consensus 150 --~lp~~i~~l~~L~~L~l~~ 168 (259)
.+.+.+..-+.|+.|+++.
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHhCCCcCeEeccC
Confidence 2444556667788888765
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.32 E-value=0.16 Score=45.29 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCccccC-C---CcEEccHHHHHHHHHHhh
Q 039152 16 RVHTLVNKLKAFCMLLDD-D---ENIFMHDVACDVAISITS 52 (259)
Q Consensus 16 ~~~~~i~~L~~~~l~~~~-~---~~~~mHdli~dl~~~~~~ 52 (259)
.+.+++++|+++|||+.. + .+|+|||++|++++....
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 467788899999999865 2 279999999999998743
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=87.69 E-value=0.3 Score=46.74 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCccccC--CCcEEccHHHHHHH
Q 039152 16 RVHTLVNKLKAFCMLLDD--DENIFMHDVACDVA 47 (259)
Q Consensus 16 ~~~~~i~~L~~~~l~~~~--~~~~~mHdli~dl~ 47 (259)
.+.+++++|+++|||+.. .++|+|||+++|++
T Consensus 403 dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 466789999999999986 45899999999966
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.80 E-value=19 Score=23.57 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=24.3
Q ss_pred cccHHHHhCCCCccEEEcCCCCCCCCch-hhcCCCCCcEEEecC
Q 039152 81 AIPQNLLRSMLQVRVLDLTDMNLLSLPS-SIGLLTNLHTLCLYS 123 (259)
Q Consensus 81 ~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~ 123 (259)
.|....|.++..|+.+.+..+ ++.+.. .|.+|.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555667777777776653 333332 456666666666654
Done!