BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039154
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 246 bits (628), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 122/206 (59%), Positives = 153/206 (74%)
Query: 5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT EL+PFL+ D+DEVL
Sbjct: 7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
LA+AE+LG F VGG E+ H LLPPLE+L TVEET +RDKAVESL I + SDL
Sbjct: 67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
F+PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
S L +FA +E ++K++I+ +F +L
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNL 212
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 1/155 (0%)
Query: 52 FLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLC 111
F + +DD V A A +LG F + ++P L + E+ +R AVE+
Sbjct: 170 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACV 229
Query: 112 RIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQ 170
I + + DL +P +++ A + + R F + P+I KT+L +
Sbjct: 230 NIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN 289
Query: 171 LCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMS 205
L +D VR +A+ +++F + + IMS
Sbjct: 290 LMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 324
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 14/203 (6%)
Query: 17 ELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDD-EVLLAMAEELGVFI 75
+LK++ ++RLN I L + +G + + L+P + +D V LA+ E ++
Sbjct: 372 QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE----YM 427
Query: 76 PYVGGVEHAHVLLPPLETLCTV----EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVK 131
P + G L +LC +R+ A +L ++ + + IP V
Sbjct: 428 PLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 487
Query: 132 RLAAGEWFTARVSACGLFHIAYPS---APDILKTELRSIYTQLCQDDMPMVRRSAASNLR 188
++ + R++ LF I S DI + ++ D + VR + A +L+
Sbjct: 488 AMSGDPNYLHRMTT--LFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 545
Query: 189 KFAATVEPAHLKTDIMSIFEDLT 211
K ++ + L++++ I E LT
Sbjct: 546 KIGPILDNSTLQSEVKPILEKLT 568
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 246 bits (628), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 122/206 (59%), Positives = 153/206 (74%)
Query: 5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT EL+PFL+ D+DEVL
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
LA+AE+LG F VGG E+ H LLPPLE+L TVEET +RDKAVESL I + SDL
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
F+PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
S L +FA +E ++K++I+ +F +L
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNL 211
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 1/155 (0%)
Query: 52 FLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLC 111
F + +DD V A A +LG F + ++P L + E+ +R AVE+
Sbjct: 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACV 228
Query: 112 RIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQ 170
I + + DL +P +++ A + + R F + P+I KT+L +
Sbjct: 229 NIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN 288
Query: 171 LCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMS 205
L +D VR +A+ +++F + + IMS
Sbjct: 289 LMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 14/203 (6%)
Query: 17 ELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDD-EVLLAMAEELGVFI 75
+LK++ ++RLN I L + +G + + L+P + +D V LA+ E ++
Sbjct: 371 QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE----YM 426
Query: 76 PYVGGVEHAHVLLPPLETLCTV----EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVK 131
P + G L +LC +R+ A +L ++ + + IP V
Sbjct: 427 PLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 486
Query: 132 RLAAGEWFTARVSACGLFHIAYPS---APDILKTELRSIYTQLCQDDMPMVRRSAASNLR 188
++ + R++ LF I S DI + ++ D + VR + A +L+
Sbjct: 487 AMSGDPNYLHRMTT--LFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 189 KFAATVEPAHLKTDIMSIFEDLT 211
K ++ + L++++ I E LT
Sbjct: 545 KIGPILDNSTLQSEVKPILEKLT 567
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 246 bits (628), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 122/206 (59%), Positives = 153/206 (74%)
Query: 5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT EL+PFL+ D+DEVL
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
LA+AE+LG F VGG E+ H LLPPLE+L TVEET +RDKAVESL I + SDL
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
F+PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
S L +FA +E ++K++I+ +F +L
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNL 211
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 52 FLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLC 111
F + +DD V A A +LG F + ++P L + E+ +R AVE+
Sbjct: 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACV 228
Query: 112 RIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQ 170
I + + DL +P +++ A + + R F + P+I KT+L +
Sbjct: 229 NIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN 288
Query: 171 LCQDDMPMVRRSAASNLRKF 190
L +D VR +A+ +++F
Sbjct: 289 LMKDCEAEVRAAASHKVKEF 308
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 14/203 (6%)
Query: 17 ELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDD-EVLLAMAEELGVFI 75
+LK++ ++RLN I L + +G + + L+P + +D V LA+ E ++
Sbjct: 371 QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE----YM 426
Query: 76 PYVGGVEHAHVLLPPLETLCTV----EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVK 131
P + G L +LC +R+ A +L ++ + + IP V
Sbjct: 427 PLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 486
Query: 132 RLAAGEWFTARVSACGLFHIAYPS---APDILKTELRSIYTQLCQDDMPMVRRSAASNLR 188
++ + R++ LF I S DI + ++ D + VR + A +L+
Sbjct: 487 AMSGDPNYLHRMTT--LFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 189 KFAATVEPAHLKTDIMSIFEDLT 211
K ++ + L++++ I E LT
Sbjct: 545 KIGPILDNSTLQSEVKPILEKLT 567
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 246 bits (628), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 122/206 (59%), Positives = 153/206 (74%)
Query: 5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVL 64
D+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT EL+PFL+ D+DEVL
Sbjct: 7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD 124
LA+AE+LG F VGG E+ H LLPPLE+L TVEET +RDKAVESL I + SDL
Sbjct: 67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
F+PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLRKFAATVEPAHLKTDIMSIFEDL 210
S L +FA +E ++K++I+ +F +L
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNL 212
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 52 FLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLC 111
F + +DD V A A +LG F + ++P L + E+ +R AVE+
Sbjct: 170 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACV 229
Query: 112 RIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQ 170
I + + DL +P +++ A + + R F + P+I KT+L +
Sbjct: 230 NIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN 289
Query: 171 LCQDDMPMVRRSAASNLRKF 190
L +D VR +A+ +++F
Sbjct: 290 LMKDCEAEVRAAASHKVKEF 309
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 14/203 (6%)
Query: 17 ELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDD-EVLLAMAEELGVFI 75
+LK++ ++RLN I L + +G + + L+P + +D V LA+ E ++
Sbjct: 372 QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE----YM 427
Query: 76 PYVGGVEHAHVLLPPLETLCTV----EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVK 131
P + G L +LC +R+ A +L ++ + + IP V
Sbjct: 428 PLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 487
Query: 132 RLAAGEWFTARVSACGLFHIAYPS---APDILKTELRSIYTQLCQDDMPMVRRSAASNLR 188
++ + R++ LF I S DI + ++ D + VR + A +L+
Sbjct: 488 AMSGDPNYLHRMTT--LFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 545
Query: 189 KFAATVEPAHLKTDIMSIFEDLT 211
K ++ + L++++ I E LT
Sbjct: 546 KIGPILDNSTLQSEVKPILEKLT 568
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 244 bits (622), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/203 (59%), Positives = 151/203 (74%)
Query: 8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAM 67
LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT EL+PFL+ D+DEVLLA+
Sbjct: 3 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 62
Query: 68 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFI 127
AE+LG F VGG E+ H LLPPLE+L TVEET +RDKAVESL I + SDL F+
Sbjct: 63 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 122
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AAS L
Sbjct: 123 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 182
Query: 188 RKFAATVEPAHLKTDIMSIFEDL 210
+FA +E ++K++I+ +F +L
Sbjct: 183 GEFAKVLELDNVKSEIIPMFSNL 205
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 1/155 (0%)
Query: 52 FLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLC 111
F + +DD V A A +LG F + ++P L + E+ +R AVE+
Sbjct: 163 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACV 222
Query: 112 RIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQ 170
I + + DL +P +++ A + + R F + P+I KT+L +
Sbjct: 223 NIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN 282
Query: 171 LCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMS 205
L +D VR +A+ +++F + + IMS
Sbjct: 283 LMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 317
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 14/203 (6%)
Query: 17 ELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDD-EVLLAMAEELGVFI 75
+LK++ ++RLN I L + +G + + L+P + +D V LA+ E ++
Sbjct: 365 QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE----YM 420
Query: 76 PYVGGVEHAHVLLPPLETLCTV----EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVK 131
P + G L +LC +R+ A +L ++ + + IP V
Sbjct: 421 PLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 480
Query: 132 RLAAGEWFTARVSACGLFHIAYPS---APDILKTELRSIYTQLCQDDMPMVRRSAASNLR 188
++ + R++ LF I S DI + ++ D + VR + A +L+
Sbjct: 481 AMSGDPNYLHRMTT--LFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 538
Query: 189 KFAATVEPAHLKTDIMSIFEDLT 211
K ++ + L++++ I E LT
Sbjct: 539 KIGPILDNSTLQSEVKPILEKLT 561
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 244 bits (622), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/203 (59%), Positives = 151/203 (74%)
Query: 8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAM 67
LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT EL+PFL+ D+DEVLLA+
Sbjct: 1 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 60
Query: 68 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFI 127
AE+LG F VGG E+ H LLPPLE+L TVEET +RDKAVESL I + SDL F+
Sbjct: 61 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AAS L
Sbjct: 121 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 180
Query: 188 RKFAATVEPAHLKTDIMSIFEDL 210
+FA +E ++K++I+ +F +L
Sbjct: 181 GEFAKVLELDNVKSEIIPMFSNL 203
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 1/155 (0%)
Query: 52 FLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLC 111
F + +DD V A A +LG F + ++P L + E+ +R AVE+
Sbjct: 161 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACV 220
Query: 112 RIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQ 170
I + + DL +P +++ A + + R F + P+I KT+L +
Sbjct: 221 NIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN 280
Query: 171 LCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMS 205
L +D VR +A+ +++F + + IMS
Sbjct: 281 LMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 315
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 14/203 (6%)
Query: 17 ELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDD-EVLLAMAEELGVFI 75
+LK++ ++RLN I L + +G + + L+P + +D V LA+ E ++
Sbjct: 363 QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE----YM 418
Query: 76 PYVGGVEHAHVLLPPLETLCTV----EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVK 131
P + G L +LC +R+ A +L ++ + + IP V
Sbjct: 419 PLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 478
Query: 132 RLAAGEWFTARVSACGLFHIAYPS---APDILKTELRSIYTQLCQDDMPMVRRSAASNLR 188
++ + R++ LF I S DI + ++ D + VR + A +L+
Sbjct: 479 AMSGDPNYLHRMTT--LFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 536
Query: 189 KFAATVEPAHLKTDIMSIFEDLT 211
K ++ + L++++ I E LT
Sbjct: 537 KIGPILDNSTLQSEVKPILEKLT 559
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 240 bits (613), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/205 (58%), Positives = 150/205 (73%)
Query: 6 EPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLL 65
+ LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ERT EL+PFL+ D+DEVLL
Sbjct: 1 DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 60
Query: 66 AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW 125
A+AE+LG F VGG E+ H LLPPLE+L TVEET +RDKAVESL I + SDL
Sbjct: 61 ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 120
Query: 126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAAS 185
F+PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD P VRR+AAS
Sbjct: 121 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAAS 180
Query: 186 NLRKFAATVEPAHLKTDIMSIFEDL 210
L +FA +E ++K++I+ F +L
Sbjct: 181 KLGEFAKVLELDNVKSEIIPXFSNL 205
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Query: 52 FLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLC 111
F + +DD V A A +LG F + ++P L + E+ +R AVE+
Sbjct: 163 FRNLCSDDTPXVRRAAASKLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACV 222
Query: 112 RIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQ 170
I + + DL P +++ A + + R F + P+I KT+L +
Sbjct: 223 NIAQLLPQEDLEALVXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQN 282
Query: 171 LCQDDMPMVRRSAASNLRKF 190
L +D VR +A+ +++F
Sbjct: 283 LXKDCEAEVRAAASHKVKEF 302
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 14/203 (6%)
Query: 17 ELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDD-EVLLAMAEELGVFI 75
+LK++ ++RLN I L + +G + + L+P + +D V LA+ E +
Sbjct: 365 QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE----YX 420
Query: 76 PYVGGVEHAHVLLPPLETLCTV----EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVK 131
P + G L +LC +R+ A +L ++ + + IP V
Sbjct: 421 PLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 480
Query: 132 RLAAGEWFTARVSACGLFHIAYPS---APDILKTELRSIYTQLCQDDMPMVRRSAASNLR 188
+ + R + LF I S DI + D + VR + A +L+
Sbjct: 481 AXSGDPNYLHRXTT--LFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQ 538
Query: 189 KFAATVEPAHLKTDIMSIFEDLT 211
K ++ + L++++ I E LT
Sbjct: 539 KIGPILDNSTLQSEVKPILEKLT 561
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 232
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 14/212 (6%)
Query: 8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIP-FLSANNDDDDEVLLA 66
LYPIAVL DEL+N+D+QLRLNSI++LSTIA ALG ER + L+P + D V LA
Sbjct: 6 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLA 65
Query: 67 MAEELGVFIPYVGGVEHAHVLLPPLETLCTV----EETCMRDKAVESLCRIGSQMRESDL 122
+ E ++P + G L +LC +R+ A +L ++ + +
Sbjct: 66 IIE----YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 121
Query: 123 VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS---APDILKTELRSIYTQLCQDDMPMV 179
IP V ++ + R++ LF I S DI + ++ D + V
Sbjct: 122 HATIIPKVLAMSGDPNYLHRMTT--LFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 179
Query: 180 RRSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
R + A +L+K ++ + L++++ I E LT
Sbjct: 180 RFNVAKSLQKIGPILDNSTLQSEVKPILEKLT 211
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 25/158 (15%)
Query: 30 IRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89
+RR + A ALG+ + + P + A D+D V A A+ LG G E A +
Sbjct: 30 VRRAA--AYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQI-----GDERA---VE 79
Query: 90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLF 149
PL E+ +R A +L +IG + PL+K L +WF +A L
Sbjct: 80 PLIKALKDEDGWVRQSAAVALGQIGDERA-------VEPLIKALKDEDWFVRIAAAFALG 132
Query: 150 HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
I A + L + +D+ VR+SAA L
Sbjct: 133 EIGDERAVEPL--------IKALKDEDGWVRQSAADAL 162
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 25/158 (15%)
Query: 30 IRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89
+RR + A ALG+ + + P + A D+D V A A+ LG G E A +
Sbjct: 35 VRRAA--AYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQI-----GDERA---VE 84
Query: 90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLF 149
PL E+ +R A +L +IG + PL+K L +WF +A L
Sbjct: 85 PLIKALKDEDGWVRQSAAVALGQIGDERA-------VEPLIKALKDEDWFVRIAAAFALG 137
Query: 150 HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
I A + L + +D+ VR+SAA L
Sbjct: 138 EIGDERAVEPL--------IKALKDEDGWVRQSAADAL 167
>pdb|2PLY|A Chain A, Structure Of The Mrna Binding Fragment Of Elongation
Factor Selb In Complex With Secis Rna.
pdb|2PLY|B Chain B, Structure Of The Mrna Binding Fragment Of Elongation
Factor Selb In Complex With Secis Rna
Length = 258
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 138 WFTARVSACGLFHIAYPSAPDILKTELRSIY 168
W+ A A FH YP P + + ELRS Y
Sbjct: 67 WWQAVTRALEEFHSRYPLRPGLAREELRSRY 97
>pdb|2UWM|A Chain A, C-Terminal Domain(Wh2-Wh4) Of Elongation Factor Selb In
Complex With Secis Rna
pdb|2UWM|B Chain B, C-Terminal Domain(Wh2-Wh4) Of Elongation Factor Selb In
Complex With Secis Rna
Length = 258
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 138 WFTARVSACGLFHIAYPSAPDILKTELRSIY 168
W+ A A FH YP P + + ELRS Y
Sbjct: 67 WWQAVTRALEEFHSRYPLRPGLAREELRSRY 97
>pdb|1LVA|A Chain A, Crystal Structure Of A C-Terminal Fragment Of Moorella
Thermoacetica Elongation Factor Selb
Length = 258
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 138 WFTARVSACGLFHIAYPSAPDILKTELRSIY 168
W+ A A FH YP P + + ELRS Y
Sbjct: 67 WWQAVTRALEEFHSRYPLRPGLAREELRSRY 97
>pdb|2V9V|A Chain A, Crystal Structure Of Moorella Thermoacetica Selb(377-511)
Length = 135
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 138 WFTARVSACGLFHIAYPSAPDILKTELRSIY 168
W+ A A FH YP P + + ELRS Y
Sbjct: 67 WWQAVTRALEEFHSRYPLRPGLAREELRSRY 97
>pdb|3VKF|A Chain A, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|B Chain B, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 585
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 23/60 (38%)
Query: 152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
YP D+L+ ++ +YT P RR L V PA D+ S F T
Sbjct: 391 GYPEGKDVLRETIKFMYTDWADRHNPETRRKTLLALFTDHQWVAPAVATADLHSNFGSPT 450
>pdb|3B3Q|A Chain A, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|B Chain B, Crystal Structure Of A Synaptic Adhesion Complex
Length = 577
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 23/60 (38%)
Query: 152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
YP D+L+ ++ +YT P RR L V PA D+ S F T
Sbjct: 386 GYPEGKDVLRETIKFMYTDWADRHNPETRRKTLLALFTDHQWVAPAVATADLHSNFGSPT 445
>pdb|3BIW|A Chain A, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|B Chain B, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|C Chain C, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|D Chain D, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIX|A Chain A, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|B Chain B, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|C Chain C, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|D Chain D, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
Length = 574
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 23/60 (38%)
Query: 152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211
YP D+L+ ++ +YT P RR L V PA D+ S F T
Sbjct: 374 GYPEGKDVLRETIKFMYTDWADRHNPETRRKTLLALFTDHQWVAPAVATADLHSNFGSPT 433
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 26 RLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAH 85
R+ +IR+LS +RA G + +EL+ L ++D+ LL +A F+ E H
Sbjct: 34 RVETIRKLSKSSRA-GNDANRQELLTTLQNLSNDE---LLPVARAFSQFLNLANTAEQYH 89
Query: 86 VLLPPLETLCTVE 98
+ P E E
Sbjct: 90 SISPKGEAASNPE 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,630,189
Number of Sequences: 62578
Number of extensions: 204688
Number of successful extensions: 534
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 45
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)