Query 039154
Match_columns 211
No_of_seqs 134 out of 729
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:50:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 99.9 7.1E-24 1.5E-28 191.7 13.8 205 7-211 80-285 (759)
2 KOG0211 Protein phosphatase 2A 99.8 4.5E-20 9.7E-25 167.2 9.7 192 19-210 208-406 (759)
3 PRK09687 putative lyase; Provi 99.6 4.6E-14 1E-18 116.3 14.3 94 10-115 24-120 (280)
4 PRK09687 putative lyase; Provi 99.6 1.2E-13 2.7E-18 113.8 15.4 161 11-190 56-219 (280)
5 PRK13800 putative oxidoreducta 99.4 1.5E-11 3.2E-16 116.1 14.9 115 56-190 751-865 (897)
6 KOG1240 Protein kinase contain 99.3 1.4E-11 2.9E-16 114.3 10.4 187 23-209 437-663 (1431)
7 PRK13800 putative oxidoreducta 99.3 8.5E-11 1.8E-15 111.0 13.7 59 10-76 622-681 (897)
8 PF12348 CLASP_N: CLASP N term 99.2 6.8E-10 1.5E-14 88.8 14.5 179 17-197 15-211 (228)
9 KOG2171 Karyopherin (importin) 99.1 2.6E-09 5.7E-14 99.3 14.6 179 26-209 326-516 (1075)
10 KOG2171 Karyopherin (importin) 99.1 9.5E-09 2.1E-13 95.6 17.1 196 11-206 350-563 (1075)
11 KOG2023 Nuclear transport rece 99.0 2.9E-09 6.2E-14 94.3 12.0 198 11-210 213-481 (885)
12 PF12755 Vac14_Fab1_bd: Vacuol 99.0 5.7E-09 1.2E-13 72.4 9.0 82 102-183 2-88 (97)
13 KOG1242 Protein containing ada 99.0 2.1E-08 4.7E-13 88.2 14.3 197 11-208 218-459 (569)
14 KOG1240 Protein kinase contain 99.0 6.9E-09 1.5E-13 96.8 11.5 181 13-193 466-686 (1431)
15 PF01602 Adaptin_N: Adaptin N 98.9 2.3E-08 5E-13 89.1 13.3 176 10-194 80-298 (526)
16 KOG2023 Nuclear transport rece 98.9 2.6E-08 5.6E-13 88.4 13.0 185 8-193 12-245 (885)
17 PF01602 Adaptin_N: Adaptin N 98.8 1.9E-07 4E-12 83.3 14.8 167 15-190 10-179 (526)
18 KOG1242 Protein containing ada 98.8 2.9E-07 6.2E-12 81.3 14.9 194 11-207 136-338 (569)
19 KOG1243 Protein kinase [Genera 98.8 2.7E-08 5.8E-13 88.8 8.4 164 45-208 327-492 (690)
20 COG1413 FOG: HEAT repeat [Ener 98.8 2.1E-07 4.6E-12 78.6 13.5 159 11-190 45-240 (335)
21 PF12717 Cnd1: non-SMC mitotic 98.7 1.9E-06 4.1E-11 66.5 17.1 115 22-139 1-116 (178)
22 PTZ00429 beta-adaptin; Provisi 98.7 8.3E-07 1.8E-11 82.0 17.4 175 10-193 33-209 (746)
23 KOG0213 Splicing factor 3b, su 98.7 4.6E-07 9.9E-12 81.6 14.6 197 11-209 365-602 (1172)
24 PTZ00429 beta-adaptin; Provisi 98.7 1.8E-06 3.8E-11 79.9 16.9 182 9-197 105-290 (746)
25 COG1413 FOG: HEAT repeat [Ener 98.7 1.4E-06 3E-11 73.5 15.2 160 10-188 75-269 (335)
26 PF13646 HEAT_2: HEAT repeats; 98.6 3E-07 6.6E-12 62.1 8.4 85 89-188 2-88 (88)
27 KOG1060 Vesicle coat complex A 98.6 2.4E-06 5.1E-11 77.4 16.1 170 12-191 38-208 (968)
28 PF13646 HEAT_2: HEAT repeats; 98.6 3.2E-07 6.9E-12 62.0 8.4 85 11-111 1-88 (88)
29 KOG1820 Microtubule-associated 98.6 2.2E-06 4.9E-11 79.4 16.4 191 13-207 257-458 (815)
30 TIGR02270 conserved hypothetic 98.6 1.2E-06 2.7E-11 75.8 13.4 149 11-191 56-206 (410)
31 PF12348 CLASP_N: CLASP N term 98.6 5E-07 1.1E-11 72.1 10.0 145 12-159 56-211 (228)
32 PF10508 Proteasom_PSMB: Prote 98.5 3.1E-06 6.7E-11 75.5 15.1 185 9-193 38-232 (503)
33 KOG1241 Karyopherin (importin) 98.5 1.8E-06 3.8E-11 78.0 13.2 178 18-196 226-439 (859)
34 COG5181 HSH155 U2 snRNP splice 98.5 4.9E-06 1.1E-10 73.9 15.4 185 13-205 734-925 (975)
35 COG5181 HSH155 U2 snRNP splice 98.5 1.3E-06 2.8E-11 77.5 10.7 197 11-209 170-407 (975)
36 KOG0213 Splicing factor 3b, su 98.5 7.2E-06 1.6E-10 74.1 15.3 185 18-207 485-682 (1172)
37 KOG0166 Karyopherin (importin) 98.5 1.3E-05 2.7E-10 70.6 16.6 180 11-192 68-266 (514)
38 KOG1824 TATA-binding protein-i 98.5 3.1E-06 6.7E-11 78.0 13.2 193 3-196 168-406 (1233)
39 PF12717 Cnd1: non-SMC mitotic 98.5 3.2E-06 6.9E-11 65.2 11.5 109 100-210 2-110 (178)
40 cd00020 ARM Armadillo/beta-cat 98.5 1.1E-06 2.3E-11 62.4 8.2 106 86-191 7-119 (120)
41 PF13513 HEAT_EZ: HEAT-like re 98.5 4E-07 8.7E-12 56.3 5.1 52 139-190 1-55 (55)
42 TIGR02270 conserved hypothetic 98.5 6.5E-06 1.4E-10 71.4 14.3 156 11-192 88-267 (410)
43 KOG0212 Uncharacterized conser 98.4 3E-06 6.6E-11 74.3 11.7 177 18-195 52-240 (675)
44 PF02985 HEAT: HEAT repeat; I 98.4 3.5E-07 7.6E-12 49.8 3.7 30 164-193 1-30 (31)
45 PLN03200 cellulose synthase-in 98.4 9.6E-06 2.1E-10 81.2 16.1 194 10-210 489-702 (2102)
46 KOG2137 Protein kinase [Signal 98.4 3.6E-06 7.9E-11 75.7 10.6 152 59-211 362-517 (700)
47 KOG1243 Protein kinase [Genera 98.4 9.5E-07 2.1E-11 79.1 6.9 186 11-196 332-519 (690)
48 KOG2956 CLIP-associating prote 98.4 2.5E-05 5.4E-10 67.4 15.1 191 11-210 288-491 (516)
49 PLN03200 cellulose synthase-in 98.3 1.7E-05 3.7E-10 79.5 15.6 181 16-198 571-770 (2102)
50 KOG2137 Protein kinase [Signal 98.3 7.7E-06 1.7E-10 73.7 11.6 191 14-209 278-475 (700)
51 KOG2259 Uncharacterized conser 98.3 2.7E-06 5.9E-11 75.8 8.3 94 56-152 207-308 (823)
52 COG5096 Vesicle coat complex, 98.3 2.5E-05 5.3E-10 71.7 13.6 174 11-193 20-196 (757)
53 PF12755 Vac14_Fab1_bd: Vacuol 98.2 3.9E-06 8.5E-11 58.2 6.4 65 82-146 23-89 (97)
54 cd00020 ARM Armadillo/beta-cat 98.2 5.5E-06 1.2E-10 58.6 6.9 107 47-153 6-119 (120)
55 KOG1824 TATA-binding protein-i 98.2 6.2E-05 1.3E-09 69.8 14.6 194 4-197 40-291 (1233)
56 KOG1241 Karyopherin (importin) 98.2 8.6E-05 1.9E-09 67.4 15.1 182 11-194 261-479 (859)
57 KOG1949 Uncharacterized conser 98.2 1.5E-05 3.2E-10 71.7 10.0 140 51-190 177-329 (1005)
58 KOG0166 Karyopherin (importin) 98.2 5.1E-05 1.1E-09 66.8 12.9 179 11-192 111-308 (514)
59 KOG4653 Uncharacterized conser 98.1 5.9E-05 1.3E-09 69.2 13.5 184 11-195 770-967 (982)
60 PF12460 MMS19_C: RNAPII trans 98.1 0.00055 1.2E-08 59.7 17.6 198 11-211 191-415 (415)
61 KOG2956 CLIP-associating prote 98.0 6.5E-05 1.4E-09 64.9 11.1 145 11-159 331-482 (516)
62 KOG0915 Uncharacterized conser 98.0 7.7E-05 1.7E-09 72.0 11.9 200 4-203 1033-1317(1702)
63 PF02985 HEAT: HEAT repeat; I 98.0 8.2E-06 1.8E-10 44.3 2.9 29 126-154 1-29 (31)
64 PF05004 IFRD: Interferon-rela 97.9 0.0012 2.7E-08 55.3 16.9 201 10-210 44-281 (309)
65 KOG4224 Armadillo repeat prote 97.9 2.3E-05 5E-10 65.9 6.1 175 17-193 93-281 (550)
66 PF10508 Proteasom_PSMB: Prote 97.9 0.0008 1.7E-08 60.2 16.2 187 11-198 79-283 (503)
67 PF13513 HEAT_EZ: HEAT-like re 97.9 9.6E-06 2.1E-10 50.0 2.9 53 61-113 1-55 (55)
68 COG5096 Vesicle coat complex, 97.9 0.0003 6.5E-09 64.8 13.3 103 9-116 92-196 (757)
69 COG5218 YCG1 Chromosome conden 97.9 8.4E-05 1.8E-09 66.0 9.3 163 12-187 94-261 (885)
70 KOG2259 Uncharacterized conser 97.9 9E-05 2E-09 66.4 9.3 171 11-185 236-468 (823)
71 KOG0915 Uncharacterized conser 97.9 0.00064 1.4E-08 65.9 15.4 198 11-209 820-1085(1702)
72 KOG4653 Uncharacterized conser 97.8 0.00022 4.8E-09 65.6 11.4 186 6-196 724-922 (982)
73 KOG2025 Chromosome condensatio 97.8 0.00052 1.1E-08 62.1 13.3 164 11-188 87-255 (892)
74 KOG4224 Armadillo repeat prote 97.8 0.00022 4.8E-09 60.2 10.3 184 11-194 210-448 (550)
75 KOG1943 Beta-tubulin folding c 97.8 0.00098 2.1E-08 62.8 15.4 197 11-209 343-590 (1133)
76 PF12719 Cnd3: Nuclear condens 97.8 0.00077 1.7E-08 56.2 13.4 178 16-196 34-234 (298)
77 COG5215 KAP95 Karyopherin (imp 97.8 0.00061 1.3E-08 60.5 12.9 166 16-195 270-440 (858)
78 KOG1060 Vesicle coat complex A 97.7 0.00052 1.1E-08 62.7 11.9 102 5-116 104-210 (968)
79 KOG1059 Vesicle coat complex A 97.6 0.0032 6.9E-08 57.3 15.0 177 11-193 183-366 (877)
80 KOG2032 Uncharacterized conser 97.6 0.003 6.4E-08 55.2 14.0 106 11-117 260-373 (533)
81 KOG1949 Uncharacterized conser 97.6 0.00042 9E-09 62.7 8.9 139 14-152 179-329 (1005)
82 COG5240 SEC21 Vesicle coat com 97.6 0.0013 2.8E-08 58.6 11.5 52 140-191 502-554 (898)
83 PF05004 IFRD: Interferon-rela 97.5 0.0023 4.9E-08 53.7 12.1 166 11-176 88-286 (309)
84 PF14500 MMS19_N: Dos2-interac 97.5 0.013 2.8E-07 48.1 15.8 197 12-210 2-255 (262)
85 PF12719 Cnd3: Nuclear condens 97.4 0.0071 1.5E-07 50.4 14.2 153 56-210 36-205 (298)
86 PF04826 Arm_2: Armadillo-like 97.4 0.0055 1.2E-07 49.9 12.7 187 11-197 14-210 (254)
87 PF05918 API5: Apoptosis inhib 97.4 0.0087 1.9E-07 53.7 14.7 121 10-136 60-189 (556)
88 KOG2062 26S proteasome regulat 97.3 0.0011 2.4E-08 60.4 8.2 135 47-192 518-653 (929)
89 KOG1820 Microtubule-associated 97.3 0.0026 5.7E-08 59.5 10.7 138 18-159 304-448 (815)
90 KOG2933 Uncharacterized conser 97.3 0.0029 6.4E-08 52.2 9.4 170 10-183 89-268 (334)
91 KOG1061 Vesicle coat complex A 97.2 0.0014 3E-08 59.8 8.1 110 6-119 83-193 (734)
92 KOG0567 HEAT repeat-containing 97.2 0.0034 7.4E-08 50.8 9.4 24 164-187 252-275 (289)
93 KOG2032 Uncharacterized conser 97.2 0.011 2.5E-07 51.7 12.9 184 17-207 225-427 (533)
94 KOG2062 26S proteasome regulat 97.2 0.0059 1.3E-07 55.8 11.4 152 14-179 523-681 (929)
95 KOG0212 Uncharacterized conser 97.2 0.035 7.6E-07 49.5 15.7 183 11-194 210-408 (675)
96 KOG0567 HEAT repeat-containing 97.2 0.0018 3.9E-08 52.4 7.2 79 56-150 196-276 (289)
97 KOG1248 Uncharacterized conser 97.1 0.031 6.6E-07 53.6 15.8 188 13-200 701-906 (1176)
98 smart00638 LPD_N Lipoprotein N 97.1 0.0055 1.2E-07 55.6 10.8 164 11-187 395-573 (574)
99 KOG1061 Vesicle coat complex A 97.1 0.014 3.1E-07 53.4 12.9 179 8-195 12-192 (734)
100 PF05918 API5: Apoptosis inhib 97.1 0.04 8.6E-07 49.6 15.5 157 11-174 25-189 (556)
101 PF04826 Arm_2: Armadillo-like 97.0 0.014 3.1E-07 47.6 11.4 135 58-192 24-163 (254)
102 KOG4413 26S proteasome regulat 97.0 0.024 5.3E-07 47.6 12.6 202 7-208 31-261 (524)
103 PF01347 Vitellogenin_N: Lipop 97.0 0.0059 1.3E-07 55.9 10.0 161 11-187 433-617 (618)
104 KOG1967 DNA repair/transcripti 97.0 0.0066 1.4E-07 56.6 9.9 149 44-192 863-1024(1030)
105 COG5064 SRP1 Karyopherin (impo 97.0 0.051 1.1E-06 45.9 14.2 177 10-191 72-271 (526)
106 PF12460 MMS19_C: RNAPII trans 96.9 0.023 5E-07 49.7 12.8 159 12-172 232-415 (415)
107 KOG1248 Uncharacterized conser 96.9 0.019 4.2E-07 54.9 12.1 155 11-166 740-910 (1176)
108 KOG2025 Chromosome condensatio 96.8 0.068 1.5E-06 49.0 15.0 168 4-189 119-291 (892)
109 smart00638 LPD_N Lipoprotein N 96.7 0.01 2.3E-07 53.8 9.3 171 11-189 359-542 (574)
110 PF01347 Vitellogenin_N: Lipop 96.7 0.012 2.5E-07 53.9 9.3 168 11-189 397-586 (618)
111 KOG0413 Uncharacterized conser 96.6 0.011 2.5E-07 55.5 8.8 143 49-192 473-645 (1529)
112 COG5116 RPN2 26S proteasome re 96.6 0.0084 1.8E-07 53.6 7.4 136 51-197 519-655 (926)
113 KOG1293 Proteins containing ar 96.5 0.17 3.8E-06 45.9 14.8 178 15-193 337-534 (678)
114 KOG1517 Guanine nucleotide bin 96.5 0.04 8.6E-07 52.5 11.1 167 26-194 487-673 (1387)
115 PLN03076 ARF guanine nucleotid 96.4 0.15 3.2E-06 52.0 15.5 191 19-210 1147-1402(1780)
116 PF07571 DUF1546: Protein of u 96.4 0.0056 1.2E-07 42.0 4.1 69 136-208 17-90 (92)
117 KOG1020 Sister chromatid cohes 96.4 0.1 2.3E-06 51.4 13.8 140 11-152 818-958 (1692)
118 KOG1943 Beta-tubulin folding c 96.3 0.063 1.4E-06 51.1 11.4 147 48-195 341-503 (1133)
119 KOG0168 Putative ubiquitin fus 96.2 0.28 6.1E-06 46.0 14.8 180 11-195 169-367 (1051)
120 KOG1525 Sister chromatid cohes 96.2 0.018 4E-07 56.3 7.8 161 47-208 258-434 (1266)
121 COG5116 RPN2 26S proteasome re 96.2 0.068 1.5E-06 48.0 10.6 151 14-177 520-676 (926)
122 PF13251 DUF4042: Domain of un 96.1 0.2 4.4E-06 38.7 11.8 148 25-196 2-178 (182)
123 KOG1059 Vesicle coat complex A 96.1 0.16 3.5E-06 46.7 12.7 178 13-196 148-332 (877)
124 PF08713 DNA_alkylation: DNA a 96.0 0.35 7.5E-06 37.9 13.3 162 23-202 28-193 (213)
125 COG5240 SEC21 Vesicle coat com 96.0 0.24 5.1E-06 44.7 13.1 150 44-195 260-445 (898)
126 KOG1062 Vesicle coat complex A 96.0 0.053 1.1E-06 50.1 9.2 116 51-172 110-228 (866)
127 KOG1993 Nuclear transport rece 96.0 0.058 1.3E-06 50.0 9.4 164 45-208 485-662 (978)
128 KOG1062 Vesicle coat complex A 95.9 0.12 2.5E-06 48.0 11.2 87 11-103 109-196 (866)
129 KOG0414 Chromosome condensatio 95.8 0.029 6.2E-07 53.8 7.1 110 79-190 912-1025(1251)
130 PF11865 DUF3385: Domain of un 95.8 0.082 1.8E-06 40.0 8.4 143 47-194 9-159 (160)
131 KOG1058 Vesicle coat complex C 95.8 0.32 7E-06 45.0 13.3 186 11-208 22-213 (948)
132 KOG0414 Chromosome condensatio 95.8 0.098 2.1E-06 50.3 10.3 177 8-192 882-1064(1251)
133 KOG1525 Sister chromatid cohes 95.8 0.014 3E-07 57.1 4.9 142 11-154 261-405 (1266)
134 KOG1967 DNA repair/transcripti 95.7 0.043 9.3E-07 51.5 7.6 140 11-150 869-1020(1030)
135 COG5215 KAP95 Karyopherin (imp 95.7 0.29 6.3E-06 44.1 12.2 176 26-207 573-776 (858)
136 KOG1077 Vesicle coat complex A 95.6 0.66 1.4E-05 42.8 14.4 193 12-207 208-450 (938)
137 cd07064 AlkD_like_1 A new stru 95.6 0.84 1.8E-05 36.0 13.8 147 48-210 46-196 (208)
138 PF12530 DUF3730: Protein of u 95.6 0.55 1.2E-05 37.8 12.9 54 137-191 96-150 (234)
139 cd08050 TAF6 TATA Binding Prot 95.3 0.25 5.3E-06 42.2 10.6 129 56-191 187-339 (343)
140 cd08050 TAF6 TATA Binding Prot 95.3 0.26 5.6E-06 42.0 10.6 136 12-154 181-340 (343)
141 KOG1078 Vesicle coat complex C 95.2 0.12 2.7E-06 47.8 8.7 58 132-191 473-531 (865)
142 PF12074 DUF3554: Domain of un 95.2 0.76 1.7E-05 38.9 13.2 46 162-208 203-250 (339)
143 cd06561 AlkD_like A new struct 95.1 1.1 2.5E-05 34.5 13.5 73 128-203 108-180 (197)
144 KOG2274 Predicted importin 9 [ 95.1 0.3 6.5E-06 46.0 10.9 143 46-195 3-160 (1005)
145 COG5064 SRP1 Karyopherin (impo 95.1 0.053 1.1E-06 45.8 5.6 148 44-193 239-399 (526)
146 PF10363 DUF2435: Protein of u 95.1 0.38 8.3E-06 32.9 9.0 78 130-208 8-87 (92)
147 COG5098 Chromosome condensatio 95.1 0.49 1.1E-05 43.7 11.9 107 89-195 302-418 (1128)
148 PF10521 DUF2454: Protein of u 95.1 0.42 9.2E-06 39.5 10.9 129 81-209 114-272 (282)
149 PF10274 ParcG: Parkin co-regu 94.9 0.33 7.2E-06 37.5 9.0 125 84-208 36-182 (183)
150 KOG2011 Sister chromatid cohes 94.8 0.3 6.4E-06 47.0 10.4 132 56-191 296-434 (1048)
151 PF12830 Nipped-B_C: Sister ch 94.7 0.17 3.8E-06 39.2 7.4 126 48-175 8-142 (187)
152 KOG2149 Uncharacterized conser 94.7 0.83 1.8E-05 39.3 11.9 115 93-208 65-188 (393)
153 KOG2549 Transcription initiati 94.7 0.28 6.1E-06 43.8 9.3 140 56-206 216-380 (576)
154 KOG1822 Uncharacterized conser 94.5 2.4 5.3E-05 43.3 15.9 198 11-209 878-1105(2067)
155 KOG1517 Guanine nucleotide bin 94.3 0.87 1.9E-05 43.9 11.9 148 22-194 570-734 (1387)
156 PF10274 ParcG: Parkin co-regu 94.3 0.35 7.6E-06 37.4 8.0 81 124-209 37-124 (183)
157 PF00514 Arm: Armadillo/beta-c 94.1 0.12 2.6E-06 29.4 4.1 31 162-192 11-41 (41)
158 PF10363 DUF2435: Protein of u 94.1 0.15 3.3E-06 34.8 5.2 64 56-119 12-76 (92)
159 KOG1020 Sister chromatid cohes 94.1 0.49 1.1E-05 47.0 10.1 107 88-195 818-924 (1692)
160 COG5218 YCG1 Chromosome conden 94.1 0.46 1E-05 43.0 9.2 93 94-187 99-194 (885)
161 KOG0392 SNF2 family DNA-depend 94.0 1.2 2.6E-05 43.7 12.3 138 56-194 86-239 (1549)
162 PF05804 KAP: Kinesin-associat 94.0 0.5 1.1E-05 44.1 9.8 175 12-189 253-438 (708)
163 PF08506 Cse1: Cse1; InterPro 93.9 0.45 9.7E-06 41.0 8.9 87 99-186 268-369 (370)
164 PF08506 Cse1: Cse1; InterPro 93.9 1.1 2.3E-05 38.7 11.0 138 9-149 210-370 (370)
165 KOG2149 Uncharacterized conser 93.7 0.71 1.5E-05 39.7 9.5 122 11-133 60-190 (393)
166 PF05804 KAP: Kinesin-associat 93.7 1.7 3.7E-05 40.6 12.6 103 11-115 292-399 (708)
167 KOG1991 Nuclear transport rece 93.6 1.1 2.4E-05 42.7 11.2 130 81-210 405-552 (1010)
168 cd06561 AlkD_like A new struct 93.5 0.36 7.9E-06 37.3 7.1 79 89-170 108-186 (197)
169 KOG2081 Nuclear transport regu 93.4 1.8 3.8E-05 38.9 11.7 132 58-195 363-498 (559)
170 KOG0413 Uncharacterized conser 93.3 5.8 0.00012 38.4 15.2 171 20-191 483-684 (1529)
171 KOG2933 Uncharacterized conser 93.2 1.6 3.5E-05 36.5 10.3 114 94-208 96-215 (334)
172 KOG4535 HEAT and armadillo rep 93.0 0.17 3.7E-06 44.6 4.8 101 94-194 492-605 (728)
173 KOG0392 SNF2 family DNA-depend 93.0 1.2 2.6E-05 43.8 10.6 165 24-195 748-928 (1549)
174 KOG1077 Vesicle coat complex A 93.0 7.8 0.00017 36.2 16.8 79 130-209 334-415 (938)
175 PF10521 DUF2454: Protein of u 92.6 0.98 2.1E-05 37.4 8.7 129 48-176 119-278 (282)
176 PF12765 Cohesin_HEAT: HEAT re 92.5 0.24 5.2E-06 28.6 3.5 26 161-186 16-41 (42)
177 KOG1851 Uncharacterized conser 92.5 3.7 8E-05 41.3 13.2 179 22-202 1501-1688(1710)
178 PF08713 DNA_alkylation: DNA a 92.4 2 4.3E-05 33.5 9.9 130 13-157 55-187 (213)
179 KOG1078 Vesicle coat complex C 92.3 0.38 8.2E-06 44.7 6.1 69 44-114 462-531 (865)
180 COG5098 Chromosome condensatio 91.7 1.4 3.1E-05 40.8 9.0 109 11-119 301-419 (1128)
181 PF08167 RIX1: rRNA processing 91.7 4.1 8.8E-05 30.8 10.5 121 84-206 23-163 (165)
182 PF00790 VHS: VHS domain; Int 91.7 1.2 2.7E-05 32.7 7.4 113 7-121 2-124 (140)
183 KOG0946 ER-Golgi vesicle-tethe 91.5 1.9 4.2E-05 40.4 9.7 71 126-196 123-199 (970)
184 KOG2160 Armadillo/beta-catenin 91.4 8.1 0.00018 32.9 13.7 178 19-196 93-286 (342)
185 KOG1822 Uncharacterized conser 91.0 1.8 3.9E-05 44.1 9.6 159 39-197 867-1043(2067)
186 KOG2011 Sister chromatid cohes 90.8 1.3 2.8E-05 42.8 8.2 100 91-190 292-397 (1048)
187 PF00514 Arm: Armadillo/beta-c 90.6 0.39 8.5E-06 27.2 3.1 28 87-114 13-40 (41)
188 PF14500 MMS19_N: Dos2-interac 90.5 6.3 0.00014 32.3 11.2 102 91-194 4-113 (262)
189 KOG1848 Uncharacterized conser 90.5 1.4 3E-05 43.7 8.2 112 83-194 994-1134(1610)
190 PF12530 DUF3730: Protein of u 90.2 8.4 0.00018 30.9 16.3 187 17-210 9-211 (234)
191 PF12830 Nipped-B_C: Sister ch 90.1 2 4.3E-05 33.3 7.5 70 124-195 7-77 (187)
192 cd03568 VHS_STAM VHS domain fa 89.9 6.1 0.00013 29.3 9.7 85 125-209 37-127 (144)
193 PF08167 RIX1: rRNA processing 89.9 3.6 7.7E-05 31.2 8.7 73 123-195 23-100 (165)
194 COG5234 CIN1 Beta-tubulin fold 89.8 1.2 2.5E-05 41.3 6.7 35 11-45 248-282 (993)
195 PF07571 DUF1546: Protein of u 89.8 1.6 3.4E-05 29.8 6.1 57 96-152 16-76 (92)
196 KOG2005 26S proteasome regulat 89.7 8.9 0.00019 35.6 12.1 177 7-191 449-703 (878)
197 PF14868 DUF4487: Domain of un 89.5 3.2 6.9E-05 37.8 9.3 61 135-195 490-555 (559)
198 PF08161 NUC173: NUC173 domain 89.1 7.9 0.00017 30.3 10.3 161 25-190 16-197 (198)
199 KOG0168 Putative ubiquitin fus 88.6 2.5 5.4E-05 40.0 8.0 127 84-210 209-343 (1051)
200 PF11698 V-ATPase_H_C: V-ATPas 88.4 1.3 2.8E-05 31.8 4.9 56 59-114 56-114 (119)
201 KOG2160 Armadillo/beta-catenin 88.0 12 0.00026 31.9 11.1 140 56-195 92-243 (342)
202 PF00790 VHS: VHS domain; Int 87.6 6.6 0.00014 28.8 8.6 86 124-209 41-135 (140)
203 KOG1837 Uncharacterized conser 87.6 1.6 3.4E-05 43.7 6.4 57 13-69 1545-1604(1621)
204 PF03378 CAS_CSE1: CAS/CSE pro 87.5 11 0.00024 33.3 11.2 160 47-208 70-245 (435)
205 KOG2549 Transcription initiati 87.5 6.8 0.00015 35.3 9.8 136 12-154 210-370 (576)
206 KOG1293 Proteins containing ar 87.4 22 0.00047 32.9 13.0 134 22-155 390-534 (678)
207 smart00185 ARM Armadillo/beta- 86.8 1.1 2.4E-05 24.7 3.3 28 164-191 13-40 (41)
208 PF05536 Neurochondrin: Neuroc 86.6 25 0.00055 32.0 14.9 175 26-201 74-270 (543)
209 COG5537 IRR1 Cohesin [Cell div 86.3 27 0.00059 32.2 13.1 150 56-210 284-448 (740)
210 KOG0946 ER-Golgi vesicle-tethe 86.1 18 0.00038 34.4 11.9 148 11-158 24-199 (970)
211 KOG1851 Uncharacterized conser 85.8 6.3 0.00014 39.8 9.3 68 126-193 1527-1599(1710)
212 KOG4413 26S proteasome regulat 85.7 22 0.00047 30.4 12.6 143 13-155 86-244 (524)
213 KOG1991 Nuclear transport rece 85.5 27 0.00059 33.8 13.1 55 141-195 105-159 (1010)
214 PF13251 DUF4042: Domain of un 85.4 15 0.00033 28.4 10.3 100 56-155 49-175 (182)
215 PF11701 UNC45-central: Myosin 85.1 2 4.3E-05 32.3 4.7 131 58-189 16-156 (157)
216 PF03224 V-ATPase_H_N: V-ATPas 85.1 1.2 2.5E-05 37.4 3.8 108 83-193 56-180 (312)
217 KOG4535 HEAT and armadillo rep 84.9 2.5 5.4E-05 37.7 5.7 147 11-157 435-606 (728)
218 PF13001 Ecm29: Proteasome sta 84.3 8.8 0.00019 34.5 9.2 143 11-155 321-489 (501)
219 cd03561 VHS VHS domain family; 84.1 14 0.0003 26.8 10.8 86 124-209 36-130 (133)
220 KOG0803 Predicted E3 ubiquitin 84.0 22 0.00047 35.9 12.2 185 11-196 43-267 (1312)
221 PF08389 Xpo1: Exportin 1-like 83.9 14 0.00029 26.6 10.5 47 100-148 100-147 (148)
222 smart00567 EZ_HEAT E-Z type HE 83.9 2.3 5E-05 22.1 3.4 14 139-152 1-14 (30)
223 KOG2213 Apoptosis inhibitor 5/ 83.8 2.2 4.9E-05 36.8 4.9 48 144-192 43-90 (460)
224 KOG0891 DNA-dependent protein 83.2 12 0.00026 39.8 10.5 193 7-208 479-695 (2341)
225 PF12074 DUF3554: Domain of un 83.1 8.8 0.00019 32.4 8.4 57 136-192 34-90 (339)
226 cd03561 VHS VHS domain family; 82.9 7.3 0.00016 28.3 6.8 71 10-80 38-116 (133)
227 PF12765 Cohesin_HEAT: HEAT re 82.8 2.2 4.7E-05 24.5 3.2 22 87-108 19-40 (42)
228 PF01603 B56: Protein phosphat 82.6 33 0.00071 30.0 12.6 188 11-199 135-376 (409)
229 KOG2081 Nuclear transport regu 82.4 21 0.00045 32.4 10.4 94 100-197 366-462 (559)
230 PF13001 Ecm29: Proteasome sta 82.1 3.9 8.4E-05 36.8 6.1 95 20-114 385-487 (501)
231 PF11701 UNC45-central: Myosin 81.9 4.9 0.00011 30.1 5.7 97 91-188 9-113 (157)
232 KOG2973 Uncharacterized conser 81.8 8.4 0.00018 32.4 7.3 100 53-155 8-112 (353)
233 KOG1992 Nuclear export recepto 81.7 39 0.00085 32.3 12.2 149 48-202 6-165 (960)
234 PF11698 V-ATPase_H_C: V-ATPas 80.9 3.8 8.2E-05 29.4 4.5 52 141-192 60-115 (119)
235 PLN03076 ARF guanine nucleotid 80.9 14 0.00031 38.4 10.0 111 83-193 1134-1254(1780)
236 PF11865 DUF3385: Domain of un 80.7 9.5 0.00021 28.7 7.0 139 11-153 12-156 (160)
237 cd03569 VHS_Hrs_Vps27p VHS dom 80.4 21 0.00045 26.3 10.7 84 126-209 42-131 (142)
238 PHA02861 uncharacterized prote 80.3 21 0.00045 26.3 9.0 128 56-189 12-147 (149)
239 COG5330 Uncharacterized protei 80.0 9.6 0.00021 32.7 7.3 62 128-189 10-73 (364)
240 KOG1992 Nuclear export recepto 79.9 17 0.00037 34.6 9.3 150 59-208 374-551 (960)
241 KOG2973 Uncharacterized conser 79.9 12 0.00027 31.4 7.7 65 9-76 3-71 (353)
242 smart00185 ARM Armadillo/beta- 79.8 2.4 5.2E-05 23.3 2.7 28 87-114 13-40 (41)
243 PF08623 TIP120: TATA-binding 79.5 4.2 9E-05 31.1 4.6 65 56-121 36-100 (169)
244 COG4912 Predicted DNA alkylati 79.4 24 0.00053 28.1 8.9 30 125-154 154-183 (222)
245 cd07064 AlkD_like_1 A new stru 78.7 30 0.00065 27.2 12.3 102 86-197 46-149 (208)
246 KOG1837 Uncharacterized conser 77.9 12 0.00026 37.9 8.1 60 99-158 1554-1615(1621)
247 cd03568 VHS_STAM VHS domain fa 77.4 26 0.00057 25.9 9.4 97 56-158 13-114 (144)
248 KOG2213 Apoptosis inhibitor 5/ 77.3 49 0.0011 28.9 17.2 154 13-173 29-202 (460)
249 PF08569 Mo25: Mo25-like; Int 77.1 45 0.00098 28.4 14.8 103 91-193 169-284 (335)
250 PF04118 Dopey_N: Dopey, N-ter 76.3 45 0.00098 28.0 10.3 100 101-200 70-175 (307)
251 cd03569 VHS_Hrs_Vps27p VHS dom 75.3 30 0.00065 25.5 8.7 109 9-119 3-118 (142)
252 PF08064 UME: UME (NUC010) dom 75.0 25 0.00055 24.5 8.2 61 137-199 27-90 (107)
253 PF08161 NUC173: NUC173 domain 74.9 21 0.00046 27.9 7.6 27 133-159 49-75 (198)
254 PF12231 Rif1_N: Rap1-interact 74.3 56 0.0012 28.1 14.2 85 123-208 272-368 (372)
255 COG5656 SXM1 Importin, protein 74.3 80 0.0017 30.1 11.8 130 80-209 402-546 (970)
256 PF12612 TFCD_C: Tubulin foldi 74.0 31 0.00067 26.7 8.3 20 56-75 16-35 (193)
257 smart00288 VHS Domain present 73.8 31 0.00068 25.0 10.2 87 124-210 36-129 (133)
258 KOG1058 Vesicle coat complex C 73.7 85 0.0018 29.9 15.0 114 93-207 324-442 (948)
259 PF08064 UME: UME (NUC010) dom 73.3 14 0.00031 25.8 5.7 65 59-126 27-94 (107)
260 PF08623 TIP120: TATA-binding 72.8 6.3 0.00014 30.1 4.0 99 96-195 37-150 (169)
261 PF04821 TIMELESS: Timeless pr 72.1 53 0.0012 26.9 10.4 55 9-72 13-68 (266)
262 COG5537 IRR1 Cohesin [Cell div 71.6 25 0.00054 32.4 7.9 101 91-192 280-386 (740)
263 cd03567 VHS_GGA VHS domain fam 71.2 38 0.00083 24.9 8.1 71 48-118 38-119 (139)
264 KOG1848 Uncharacterized conser 70.2 48 0.001 33.6 9.9 152 56-208 851-1050(1610)
265 COG5656 SXM1 Importin, protein 70.0 1E+02 0.0023 29.4 12.1 141 47-194 3-157 (970)
266 PF03130 HEAT_PBS: PBS lyase H 68.6 6.1 0.00013 20.1 2.2 14 179-192 1-14 (27)
267 PF14668 RICTOR_V: Rapamycin-i 67.6 21 0.00046 23.2 5.1 54 103-156 4-60 (73)
268 PF04078 Rcd1: Cell differenti 66.4 72 0.0016 26.2 13.6 106 83-190 92-233 (262)
269 KOG1993 Nuclear transport rece 66.4 30 0.00064 33.0 7.5 136 56-197 9-157 (978)
270 KOG3036 Protein involved in ce 66.1 50 0.0011 27.1 7.9 29 160-190 234-262 (293)
271 KOG2153 Protein involved in th 66.1 1.2E+02 0.0025 28.4 12.2 164 29-192 305-527 (704)
272 COG5330 Uncharacterized protei 64.9 25 0.00054 30.2 6.3 62 11-73 9-73 (364)
273 PF04078 Rcd1: Cell differenti 64.6 73 0.0016 26.2 8.7 131 25-156 65-220 (262)
274 PF12054 DUF3535: Domain of un 64.1 63 0.0014 28.7 9.0 96 97-192 98-208 (441)
275 PF14225 MOR2-PAG1_C: Cell mor 63.9 81 0.0018 25.9 11.9 37 141-177 204-242 (262)
276 PF14868 DUF4487: Domain of un 63.7 18 0.00039 33.1 5.6 72 86-157 479-555 (559)
277 cd03565 VHS_Tom1 VHS domain fa 63.6 57 0.0012 24.0 10.6 80 130-209 44-132 (141)
278 COG1698 Uncharacterized protei 63.1 45 0.00096 22.6 6.6 64 86-149 17-85 (93)
279 KOG4524 Uncharacterized conser 62.8 13 0.00028 35.9 4.6 84 91-176 808-902 (1014)
280 KOG2153 Protein involved in th 61.5 93 0.002 29.0 9.5 81 105-185 304-385 (704)
281 KOG0403 Neoplastic transformat 61.1 30 0.00064 30.9 6.2 76 44-127 343-421 (645)
282 PF12054 DUF3535: Domain of un 60.4 1E+02 0.0022 27.3 9.7 31 178-210 410-440 (441)
283 KOG2753 Uncharacterized conser 60.4 38 0.00083 28.8 6.5 94 84-195 45-138 (378)
284 PF08767 CRM1_C: CRM1 C termin 60.0 1.1E+02 0.0023 25.9 9.8 139 21-174 132-299 (319)
285 KOG2199 Signal transducing ada 58.4 1.1E+02 0.0025 26.7 9.1 86 124-209 44-135 (462)
286 KOG1048 Neural adherens juncti 58.2 51 0.0011 31.0 7.5 99 11-113 235-347 (717)
287 COG4912 Predicted DNA alkylati 58.0 96 0.0021 24.8 8.8 98 89-196 88-187 (222)
288 PF03224 V-ATPase_H_N: V-ATPas 57.6 55 0.0012 27.3 7.3 83 105-196 55-138 (312)
289 smart00802 UME Domain in UVSB 57.6 63 0.0014 22.6 8.5 59 139-199 29-90 (107)
290 KOG0803 Predicted E3 ubiquitin 57.2 42 0.00091 33.9 7.2 93 100-192 55-153 (1312)
291 KOG2022 Nuclear transport rece 57.1 1.7E+02 0.0036 28.5 10.6 148 58-208 435-635 (982)
292 KOG0889 Histone acetyltransfer 56.8 3.4E+02 0.0074 30.8 13.9 179 31-211 1105-1328(3550)
293 KOG0889 Histone acetyltransfer 56.4 54 0.0012 36.4 8.0 123 85-208 983-1170(3550)
294 PF03378 CAS_CSE1: CAS/CSE pro 56.2 93 0.002 27.6 8.7 165 30-201 93-281 (435)
295 PF14663 RasGEF_N_2: Rapamycin 55.7 31 0.00067 24.4 4.7 34 122-155 5-38 (115)
296 KOG2199 Signal transducing ada 55.3 1.4E+02 0.0029 26.3 9.0 95 56-156 21-120 (462)
297 PF09324 DUF1981: Domain of un 54.4 42 0.0009 22.4 4.9 34 87-120 18-52 (86)
298 PF07539 DRIM: Down-regulated 54.2 60 0.0013 23.9 6.1 82 85-173 16-98 (141)
299 PHA02922 hypothetical protein; 54.2 86 0.0019 23.1 7.8 116 58-178 21-142 (153)
300 COG5099 RNA-binding protein of 53.8 96 0.0021 29.7 8.7 85 46-138 545-632 (777)
301 PF08620 RPAP1_C: RPAP1-like, 52.9 37 0.0008 22.1 4.3 32 11-42 41-72 (73)
302 COG1698 Uncharacterized protei 52.7 71 0.0015 21.7 6.0 27 123-149 15-43 (93)
303 COG5095 TAF6 Transcription ini 52.4 98 0.0021 26.2 7.6 37 123-159 275-321 (450)
304 COG5657 CSE1 CAS/CSE protein i 52.2 2.4E+02 0.0051 27.6 11.6 143 56-208 13-172 (947)
305 KOG3036 Protein involved in ce 52.2 1.3E+02 0.0029 24.7 9.8 108 85-192 123-247 (293)
306 cd03565 VHS_Tom1 VHS domain fa 52.1 92 0.002 22.8 8.2 32 48-79 38-71 (141)
307 KOG2274 Predicted importin 9 [ 50.9 2.5E+02 0.0054 27.5 14.5 139 56-196 500-650 (1005)
308 PF09324 DUF1981: Domain of un 50.6 21 0.00046 23.8 3.0 65 47-111 17-84 (86)
309 cd00197 VHS_ENTH_ANTH VHS, ENT 49.8 85 0.0018 21.8 8.6 67 124-190 36-113 (115)
310 cd00256 VATPase_H VATPase_H, r 49.5 24 0.00052 31.2 3.9 54 60-113 367-423 (429)
311 PF11707 Npa1: Ribosome 60S bi 49.1 1.6E+02 0.0035 24.8 11.0 79 101-179 129-243 (330)
312 KOG0904 Phosphatidylinositol 3 48.7 1.6E+02 0.0034 28.7 9.1 35 172-210 620-654 (1076)
313 PF12612 TFCD_C: Tubulin foldi 48.3 71 0.0015 24.6 6.1 18 97-114 18-35 (193)
314 KOG0891 DNA-dependent protein 47.8 4.2E+02 0.009 29.1 13.2 186 11-198 7-210 (2341)
315 smart00288 VHS Domain present 46.3 1.1E+02 0.0024 22.1 9.3 96 56-157 13-114 (133)
316 KOG1823 DRIM (Down-regulated i 46.3 3.5E+02 0.0075 27.8 12.0 181 24-206 380-606 (1364)
317 PF06685 DUF1186: Protein of u 45.7 1.7E+02 0.0036 23.9 12.7 51 89-139 114-169 (249)
318 KOG1823 DRIM (Down-regulated i 44.6 2.8E+02 0.006 28.5 10.4 185 9-206 972-1173(1364)
319 KOG2005 26S proteasome regulat 44.5 89 0.0019 29.4 6.7 72 40-115 632-704 (878)
320 PF08767 CRM1_C: CRM1 C termin 44.4 1.9E+02 0.0042 24.3 13.7 134 63-196 43-198 (319)
321 cd03572 ENTH_epsin_related ENT 44.3 1E+02 0.0022 22.2 5.8 71 84-154 36-119 (122)
322 cd03567 VHS_GGA VHS domain fam 44.2 1.3E+02 0.0027 22.1 9.4 67 130-196 43-120 (139)
323 smart00802 UME Domain in UVSB 43.5 95 0.0021 21.7 5.5 60 63-125 31-93 (107)
324 PF08010 Phage_30_3: Bacteriop 42.5 1E+02 0.0022 22.9 5.6 79 11-90 32-132 (146)
325 PF05536 Neurochondrin: Neuroc 42.4 2.2E+02 0.0047 26.1 9.0 186 8-194 4-215 (543)
326 KOG2759 Vacuolar H+-ATPase V1 42.4 15 0.00033 32.1 1.5 67 48-114 366-437 (442)
327 cd00870 PI3Ka_III Phosphoinosi 42.3 1.1E+02 0.0024 23.2 6.1 36 99-138 91-126 (166)
328 PF14228 MOR2-PAG1_mid: Cell m 42.1 3.3E+02 0.0071 27.5 10.6 129 46-175 194-359 (1120)
329 cd00872 PI3Ka_I Phosphoinositi 42.1 1.2E+02 0.0025 23.3 6.2 35 99-137 84-118 (171)
330 PF01465 GRIP: GRIP domain; I 41.6 65 0.0014 18.7 3.8 37 161-198 5-41 (46)
331 KOG3678 SARM protein (with ste 41.1 2.8E+02 0.0061 25.2 10.2 103 11-115 182-293 (832)
332 cd03572 ENTH_epsin_related ENT 41.0 1.4E+02 0.0029 21.5 6.7 31 162-192 37-67 (122)
333 PF04118 Dopey_N: Dopey, N-ter 40.6 2.2E+02 0.0048 23.9 12.0 163 24-192 70-254 (307)
334 KOG2022 Nuclear transport rece 40.3 3.7E+02 0.0079 26.3 12.6 102 22-130 522-634 (982)
335 cd00256 VATPase_H VATPase_H, r 39.8 1.9E+02 0.0042 25.6 8.0 50 141-190 370-423 (429)
336 PF14222 MOR2-PAG1_N: Cell mor 39.6 1.3E+02 0.0028 27.6 7.2 98 62-172 450-548 (552)
337 PF14222 MOR2-PAG1_N: Cell mor 39.4 3.1E+02 0.0067 25.2 9.5 65 124-194 180-251 (552)
338 PF12231 Rif1_N: Rap1-interact 38.7 2.6E+02 0.0055 24.1 13.7 75 122-197 229-308 (372)
339 PF01816 LRV: Leucine rich rep 38.5 27 0.00058 17.8 1.5 10 177-186 1-10 (26)
340 COG2733 Predicted membrane pro 38.5 2.7E+02 0.0059 24.4 9.4 187 10-203 167-381 (415)
341 PF14664 RICTOR_N: Rapamycin-i 38.1 2.7E+02 0.0058 24.1 12.4 179 21-201 80-278 (371)
342 KOG1932 TATA binding protein a 37.7 2.1E+02 0.0046 28.5 8.3 105 94-207 651-775 (1180)
343 COG5369 Uncharacterized conser 36.7 3.5E+02 0.0076 25.1 10.5 101 78-178 465-580 (743)
344 PF13764 E3_UbLigase_R4: E3 ub 36.5 3.8E+02 0.0082 26.0 9.8 33 174-208 240-272 (802)
345 cd00864 PI3Ka Phosphoinositide 36.2 1.7E+02 0.0038 21.7 6.3 35 99-137 84-118 (152)
346 COG5110 RPN1 26S proteasome re 35.9 3.6E+02 0.0079 25.1 10.0 75 38-116 631-706 (881)
347 COG5110 RPN1 26S proteasome re 35.7 3.7E+02 0.008 25.0 13.8 95 5-104 446-546 (881)
348 PF08389 Xpo1: Exportin 1-like 35.6 1.6E+02 0.0034 20.8 11.3 142 24-187 3-148 (148)
349 PF14663 RasGEF_N_2: Rapamycin 35.4 75 0.0016 22.4 4.0 28 10-37 9-36 (115)
350 PF09450 DUF2019: Domain of un 34.7 32 0.0007 24.1 2.0 24 90-113 51-74 (106)
351 PF05997 Nop52: Nucleolar prot 34.2 2.4E+02 0.0051 22.3 14.7 175 13-187 4-213 (217)
352 PF12333 Ipi1_N: Rix1 complex 34.2 1.6E+02 0.0034 20.3 5.8 35 163-197 11-45 (102)
353 PF00613 PI3Ka: Phosphoinositi 34.0 2.2E+02 0.0047 21.9 7.3 80 48-138 45-125 (184)
354 PF11099 M11L: Apoptosis regul 33.7 61 0.0013 24.7 3.4 32 12-43 67-99 (167)
355 PF07539 DRIM: Down-regulated 33.6 81 0.0018 23.2 4.1 30 161-190 15-44 (141)
356 KOG1926 Predicted regulator of 33.6 5.1E+02 0.011 26.0 10.8 158 47-207 73-247 (1129)
357 smart00145 PI3Ka Phosphoinosit 33.4 1.9E+02 0.0042 22.3 6.3 34 99-136 89-122 (184)
358 PF06685 DUF1186: Protein of u 32.7 2.1E+02 0.0046 23.3 6.7 72 58-138 124-198 (249)
359 PHA02855 anti-apoptotic membra 32.6 95 0.0021 23.6 4.2 30 13-42 80-110 (180)
360 KOG1988 Uncharacterized conser 31.9 5E+02 0.011 25.4 11.3 178 13-192 67-281 (970)
361 PF11864 DUF3384: Domain of un 31.8 3.7E+02 0.008 23.9 9.1 93 101-194 5-101 (464)
362 PF13925 Katanin_con80: con80 31.0 1.9E+02 0.0041 21.7 5.8 35 125-159 69-103 (164)
363 COG5234 CIN1 Beta-tubulin fold 30.9 1.4E+02 0.0031 28.4 5.8 159 25-192 314-491 (993)
364 KOG2759 Vacuolar H+-ATPase V1 30.8 3.8E+02 0.0083 23.8 11.3 66 126-191 367-437 (442)
365 KOG1222 Kinesin associated pro 30.2 2.4E+02 0.0052 25.7 6.9 75 62-137 341-415 (791)
366 PF13929 mRNA_stabil: mRNA sta 30.1 3.3E+02 0.0072 22.8 7.9 118 19-140 86-219 (292)
367 PF01851 PC_rep: Proteasome/cy 29.9 99 0.0021 16.7 4.3 34 145-181 2-35 (35)
368 KOG1974 DNA topoisomerase I-in 28.4 1.5E+02 0.0033 29.7 5.9 57 11-76 36-93 (1229)
369 PF07531 TAFH: NHR1 homology t 28.1 98 0.0021 21.3 3.4 41 162-202 7-49 (96)
370 COG5369 Uncharacterized conser 27.9 1.1E+02 0.0024 28.0 4.6 28 165-192 518-545 (743)
371 KOG2038 CAATT-binding transcri 27.6 4E+02 0.0086 25.8 8.1 58 57-116 314-371 (988)
372 PF14961 BROMI: Broad-minded p 27.4 3.9E+02 0.0085 27.1 8.4 69 129-197 166-236 (1296)
373 PF11864 DUF3384: Domain of un 27.3 4.5E+02 0.0097 23.4 11.7 169 22-193 3-207 (464)
374 PF12397 U3snoRNP10: U3 small 27.1 2.2E+02 0.0048 19.8 8.9 38 83-120 3-41 (121)
375 KOG4524 Uncharacterized conser 25.9 3.9E+02 0.0084 26.4 7.9 85 126-210 804-897 (1014)
376 PF04388 Hamartin: Hamartin pr 25.8 5.7E+02 0.012 24.1 12.3 146 11-172 6-161 (668)
377 PF11935 DUF3453: Domain of un 25.6 3.5E+02 0.0076 21.6 12.8 48 161-210 112-161 (239)
378 KOG2842 Interferon-related pro 25.2 4.7E+02 0.01 23.0 10.3 102 11-112 62-174 (427)
379 PF10410 DnaB_bind: DnaB-helic 25.0 1.6E+02 0.0034 17.4 3.9 43 13-55 8-50 (59)
380 cd00872 PI3Ka_I Phosphoinositi 24.8 3.2E+02 0.0069 20.8 7.2 30 177-210 85-114 (171)
381 COG5209 RCD1 Uncharacterized p 24.1 3.6E+02 0.0078 22.0 6.4 102 85-188 144-281 (315)
382 PHA02861 uncharacterized prote 23.9 3.1E+02 0.0066 20.4 5.9 43 70-112 100-147 (149)
383 PF08158 NUC130_3NT: NUC130/3N 23.7 1.8E+02 0.0038 17.5 3.7 31 160-190 16-46 (52)
384 smart00549 TAFH TAF homology. 23.1 2.5E+02 0.0055 19.1 4.9 42 162-203 6-49 (92)
385 KOG0904 Phosphatidylinositol 3 22.8 1.2E+02 0.0027 29.4 4.1 37 97-137 622-658 (1076)
386 PF09531 Ndc1_Nup: Nucleoporin 22.8 2E+02 0.0043 26.5 5.5 39 5-43 283-321 (602)
387 KOG0267 Microtubule severing p 22.7 2.4E+02 0.0053 26.7 5.8 71 126-196 677-747 (825)
388 COG5095 TAF6 Transcription ini 22.6 4.9E+02 0.011 22.2 8.3 21 177-197 301-321 (450)
389 KOG1789 Endocytosis protein RM 22.6 4.3E+02 0.0094 26.9 7.5 144 27-175 1750-1910(2235)
390 PF11935 DUF3453: Domain of un 22.2 4.1E+02 0.009 21.2 11.9 84 126-210 115-212 (239)
391 cd00869 PI3Ka_II Phosphoinosit 21.6 3.5E+02 0.0075 20.6 5.7 29 177-209 85-113 (169)
392 PF14225 MOR2-PAG1_C: Cell mor 21.6 4.5E+02 0.0099 21.5 14.1 87 105-195 134-220 (262)
393 KOG1309 Suppressor of G2 allel 21.4 1.1E+02 0.0024 23.7 2.9 27 163-189 139-165 (196)
394 KOG2875 8-oxoguanine DNA glyco 21.3 5E+02 0.011 21.8 7.5 95 43-146 111-221 (323)
395 KOG4500 Rho/Rac GTPase guanine 20.6 6.4E+02 0.014 22.8 9.4 66 11-76 317-390 (604)
396 KOG4098 Molecular chaperone Pr 20.5 1.7E+02 0.0036 21.4 3.5 59 11-75 48-106 (140)
397 KOG4646 Uncharacterized conser 20.3 3.8E+02 0.0083 20.1 7.3 66 8-76 57-128 (173)
398 cd00870 PI3Ka_III Phosphoinosi 20.1 3.3E+02 0.0071 20.6 5.4 31 176-210 91-121 (166)
399 KOG1087 Cytosolic sorting prot 20.1 6.5E+02 0.014 22.7 8.9 84 125-208 38-129 (470)
400 KOG3961 Uncharacterized conser 20.1 3.5E+02 0.0076 21.8 5.5 70 125-195 114-187 (262)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.91 E-value=7.1e-24 Score=191.65 Aligned_cols=205 Identities=57% Similarity=0.891 Sum_probs=197.5
Q ss_pred CcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccc
Q 039154 7 PLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (211)
Q Consensus 7 ~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ 86 (211)
...|++.++++++.++.+.|.+....+..+|..+|.+.|+.+|+|++.++.+++.+|+.+++.++|++.+.+|++++...
T Consensus 80 ~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~ 159 (759)
T KOG0211|consen 80 SLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHM 159 (759)
T ss_pred ccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHHH
Confidence 48899999999999999999999999999999999999999999999994499999999999999999999999999999
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHH
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELR 165 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~ 165 (211)
++|.++.++.+++..||+++++++.+++...+++....++.|.+.++..++|+.-|.++|.+|+..+..+.++ .+.++.
T Consensus 160 ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr 239 (759)
T KOG0211|consen 160 LLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELR 239 (759)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988899999999999999999966 789999
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhhC
Q 039154 166 SIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDLT 211 (211)
Q Consensus 166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L~ 211 (211)
|.+.++|+|..|+||++++++++.+++.++.+...+.++|.+.+|.
T Consensus 240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~ 285 (759)
T KOG0211|consen 240 PIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLL 285 (759)
T ss_pred HHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhh
Confidence 9999999999999999999999999999999999999999998773
No 2
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.82 E-value=4.5e-20 Score=167.17 Aligned_cols=192 Identities=21% Similarity=0.240 Sum_probs=179.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccc
Q 039154 19 KNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV 97 (211)
Q Consensus 19 ~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d 97 (211)
.+|-.+.|..+|+.++..+..+.....+.++.|.+.+ |+|++++||++++++++.+++.++.....+.++|.+.++..|
T Consensus 208 ~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~D 287 (759)
T KOG0211|consen 208 TGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRD 287 (759)
T ss_pred chhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhc
Confidence 3455677999999999988888878899999999999 999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCC
Q 039154 98 EETCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDD 175 (211)
Q Consensus 98 ~~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~ 175 (211)
++++||+.|++++..+.+.+..+ ...+.+.+.+.+..+|.+|++|++++..+..++..+|++ .+..+.+.+..+++|+
T Consensus 288 dqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~ 367 (759)
T KOG0211|consen 288 DQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDE 367 (759)
T ss_pred chhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcch
Confidence 99999999999999999999998 899999999999999999999999999999999999998 6788999999999999
Q ss_pred CHHHHHHHHHhhHHHHhhhC----chhhHHHHHHHHHhh
Q 039154 176 MPMVRRSAASNLRKFAATVE----PAHLKTDIMSIFEDL 210 (211)
Q Consensus 176 ~~~VR~aaa~~l~~~~~~~~----~~~~~~~llp~~~~L 210 (211)
.++||.+++...+++...+. ++.+.+.++|.+..|
T Consensus 368 ~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l 406 (759)
T KOG0211|consen 368 EWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL 406 (759)
T ss_pred hhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH
Confidence 99999999999999999999 778888889988765
No 3
>PRK09687 putative lyase; Provisional
Probab=99.58 E-value=4.6e-14 Score=116.32 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=61.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc-ccccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE-HAHVL 87 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~-~~~~l 87 (211)
.++.|++.|.++|..+|..++..|..+ |. ...++.+.+ ++|+++.||..++..|+.+.. +. .....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~----~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~----~~~~~~~a 91 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLR----GG----QDVFRLAIELCSSKNPIERDIGADILSQLGM----AKRCQDNV 91 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhc----Cc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC----CccchHHH
Confidence 356677777888888888887777643 43 334555555 677778888888888777543 11 12345
Q ss_pred chHHhhh-ccchhhHHHHHHHHHHHHHHh
Q 039154 88 LPPLETL-CTVEETCMRDKAVESLCRIGS 115 (211)
Q Consensus 88 lp~l~~l-~~d~~~~VR~~a~~~l~~l~~ 115 (211)
+|.|..+ .+|+++.||..|+.+|+.++.
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCK 120 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccc
Confidence 5666554 667777788888877777653
No 4
>PRK09687 putative lyase; Provisional
Probab=99.57 E-value=1.2e-13 Score=113.76 Aligned_cols=161 Identities=15% Similarity=0.067 Sum_probs=124.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-hhhchhhhhhh--cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-TPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
+..+...++|+|+.+|..++..|+.+ |... .....+|.+.. .+|+++.||..++..||.+.. +........
T Consensus 56 ~~~l~~ll~~~d~~vR~~A~~aLg~l----g~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~--~~~~~~~~a 129 (280)
T PRK09687 56 FRLAIELCSSKNPIERDIGADILSQL----GMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCK--KNPLYSPKI 129 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc----CCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc--cccccchHH
Confidence 45566678999999999999999875 4322 23567788876 588999999999999999753 111112334
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHH
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI 167 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~ 167 (211)
+..+.....|+++.||..++.+|+.+.. ...+|.+..+.+|+.|.||..++..++.+.. +. ....+.
T Consensus 130 ~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~--~~---~~~~~~ 196 (280)
T PRK09687 130 VEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIPLLINLLKDPNGDVRNWAAFALNSNKY--DN---PDIREA 196 (280)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC--CC---HHHHHH
Confidence 5667777889999999999999976542 3466778888889999999999999998822 11 257788
Q ss_pred HHHhcCCCCHHHHHHHHHhhHHH
Q 039154 168 YTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 168 ~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
++++++|+.+.||+.|+..|+++
T Consensus 197 L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 197 FVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHhcCCChHHHHHHHHHHHcc
Confidence 89999999999999999999863
No 5
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.36 E-value=1.5e-11 Score=116.14 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=80.5
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhc
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAA 135 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~ 135 (211)
+.|++++||.++++.|+.+.. .. ..-++.+..+++|+++.||.+|+.+|..+... ..+.+.+....+
T Consensus 751 l~D~~~~VR~~aa~aL~~~~~----~~--~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~aL~ 817 (897)
T PRK13800 751 ATDENREVRIAVAKGLATLGA----GG--APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAATAALR 817 (897)
T ss_pred hcCCCHHHHHHHHHHHHHhcc----cc--chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHHHhc
Confidence 455555666666665555432 11 11256677777888888888888888777543 223344666678
Q ss_pred CCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 136 GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 136 d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
|+.|.||..++..++.+.. ..-.+.+..+++|+++.||++|+..|+.+
T Consensus 818 d~d~~VR~~Aa~aL~~l~~-------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 818 ASAWQVRQGAARALAGAAA-------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred CCChHHHHHHHHHHHhccc-------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 8899999999999987642 13468888999999999999999999885
No 6
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.30 E-value=1.4e-11 Score=114.32 Aligned_cols=187 Identities=13% Similarity=0.108 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc------cccccccchHHhhhc
Q 039154 23 IQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG------VEHAHVLLPPLETLC 95 (211)
Q Consensus 23 ~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~------~~~~~~llp~l~~l~ 95 (211)
.+.|+.|+..|..++..+..|..-..++||+.. +.|....||.++.+.|-.+...+.. .-+-++|+|-|..|+
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 566889999999999999999999999999999 9999999999999999877765542 345689999999999
Q ss_pred cc-hhhHHHHHHHHHHHHHHhhcCh-------------------------------hHHHHhhHHHHHHhhcCCCchHHH
Q 039154 96 TV-EETCMRDKAVESLCRIGSQMRE-------------------------------SDLVDWFIPLVKRLAAGEWFTARV 143 (211)
Q Consensus 96 ~d-~~~~VR~~a~~~l~~l~~~l~~-------------------------------~~~~~~l~p~i~~l~~d~~~~vR~ 143 (211)
.| ....||.+-+.+++.++..... ..+.+.+-..+..|..|+.--||.
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr 596 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKR 596 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 99 6778999999999988876310 123345667778899999999999
Q ss_pred hHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHh
Q 039154 144 SACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFED 209 (211)
Q Consensus 144 ~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~ 209 (211)
+..+.+..+|-.+|++ .-+-+++.+...++|.+|..|.+...++..++-.+|+-.+.+.|+|++..
T Consensus 597 ~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q 663 (1431)
T KOG1240|consen 597 ALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ 663 (1431)
T ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH
Confidence 9999999999999998 56789999999999999999999999999999999998889999999853
No 7
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.26 E-value=8.5e-11 Score=111.02 Aligned_cols=59 Identities=25% Similarity=0.233 Sum_probs=46.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhcccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIP 76 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~ 76 (211)
.++.|++.|+|+++.+|..|++.|..+ |+ ...+|.|.+ +.|+++.||.++++.|..+.+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~----~~----~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTET----TP----PGFGPALVAALGDGAAAVRRAAAEGLRELVE 681 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhh----cc----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 467889999999999999999998765 33 335666667 788889999999888877643
No 8
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.20 E-value=6.8e-10 Score=88.76 Aligned_cols=179 Identities=16% Similarity=0.181 Sum_probs=129.3
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhh-------hhhh-cCCChHHHHHHHHHHHhccccccCcc--ccccc
Q 039154 17 ELKNDDIQLRLNSIRRLSTIARALGEERTPKELIP-------FLSA-NNDDDDEVLLAMAEELGVFIPYVGGV--EHAHV 86 (211)
Q Consensus 17 ~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p-------~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~--~~~~~ 86 (211)
.-.+.|=+.|..++..|..+...-.+......+.+ .+.. +.|...-|-+.++..+..++..+|.. .....
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 34678899999999999998865523333333333 3334 66667778899999999999988764 23466
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC---hH----
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---DI---- 159 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~---~~---- 159 (211)
++|.|...+.|....||.+|..+|..+++..+. ....+.+.+....++.++.+|..++..+..+....+ ..
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~--~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSY--SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 889999999999999999999999999999871 123457888889999999999999999999988888 22
Q ss_pred -HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 160 -LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 160 -~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
..+.+.+.+.++++|..++||.+|-..+..+.+.+|..
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 23679999999999999999999999999999998864
No 9
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.6e-09 Score=99.29 Aligned_cols=179 Identities=14% Similarity=0.117 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--cccccccchHHhhhccchhhHH
Q 039154 26 RLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVEETCM 102 (211)
Q Consensus 26 R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~~d~~~~V 102 (211)
-..|.+.++.+|..||+...--.++|.+.. ++..++.-|+++.-+|+.+++-.+. ......|+|..-..++|.++.|
T Consensus 326 ~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprV 405 (1075)
T KOG2171|consen 326 YRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRV 405 (1075)
T ss_pred HHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 446889999999999998888888888989 9999999999999999999883332 2245667888889999999999
Q ss_pred HHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCC-CchHHHhHHhHHHhhccCCChH----HHHHHHH-HHHHhcC
Q 039154 103 RDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI----LKTELRS-IYTQLCQ 173 (211)
Q Consensus 103 R~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~-~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~-~~~~L~~ 173 (211)
|.+|.++++.+...+.++.-+ +.+.|.+...-.|. +.+|-.++|..+-.+.+...++ +.+.++. .|..|.+
T Consensus 406 r~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~ 485 (1075)
T KOG2171|consen 406 RYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQ 485 (1075)
T ss_pred HHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999997543 44666666655554 4588888888888888877776 5667777 7777888
Q ss_pred CCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHh
Q 039154 174 DDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFED 209 (211)
Q Consensus 174 D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~ 209 (211)
-+.+.||..+..+++.++...+. +++|||+.
T Consensus 486 ~~~~~v~e~vvtaIasvA~AA~~-----~F~pY~d~ 516 (1075)
T KOG2171|consen 486 SSKPYVQEQAVTAIASVADAAQE-----KFIPYFDR 516 (1075)
T ss_pred CCchhHHHHHHHHHHHHHHHHhh-----hhHhHHHH
Confidence 88899999999999999987665 55566554
No 10
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=9.5e-09 Score=95.65 Aligned_cols=196 Identities=16% Similarity=0.151 Sum_probs=156.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---cccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEHA 84 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~~ 84 (211)
.+.+-.-+.|.+...|-+++..|+.++.=.+.- ..-..++|++.. ++|..|.||.+++.++|++...+++ +.+.
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~ 429 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH 429 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence 445556689999999999999998886422211 133456777778 9999999999999999999998875 4566
Q ss_pred cccchHHhhhccchh-hHHHHHHHHHHHHHHhhcChhHHHHhhHH----HHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154 85 HVLLPPLETLCTVEE-TCMRDKAVESLCRIGSQMRESDLVDWFIP----LVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (211)
Q Consensus 85 ~~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l~~~~~~~~l~p----~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~ 159 (211)
+.++|.|.....+.+ ..|...|+.++..+.+..+.+.+..++-+ .+..|-+.+.-.||..+...++.++...+..
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 778888888888874 79999999999999999999988877544 4456777888899999999999999998887
Q ss_pred ---HHHHHHHHHHHhcC----CCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHH
Q 039154 160 ---LKTELRSIYTQLCQ----DDMPMVRRSAASNLRKFAATVEPAHLKTDIMSI 206 (211)
Q Consensus 160 ---~~~~l~~~~~~L~~----D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~ 206 (211)
+.+.++|.+.+.++ ++-..+|.....++.-++..+|++.+...--++
T Consensus 510 F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~el 563 (1075)
T KOG2171|consen 510 FIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEEL 563 (1075)
T ss_pred hHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHH
Confidence 56777777776655 344888999999999999999988665544333
No 11
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.9e-09 Score=94.33 Aligned_cols=198 Identities=18% Similarity=0.194 Sum_probs=146.4
Q ss_pred HHHHHHH----hcCCCHHHHHHHHHHHHHHHHHhCCcchhh---chhhhhhh-cCCChHHHHHHHHHHHhccccccCccc
Q 039154 11 IAVLTDE----LKNDDIQLRLNSIRRLSTIARALGEERTPK---ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE 82 (211)
Q Consensus 11 l~~l~~~----l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~---~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~ 82 (211)
|+.+++. ..++++++|...|+.+.-+-... +++... -++.|..+ .+|.+++|-..|++=+..+++.--.++
T Consensus 213 iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr-~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~ 291 (885)
T KOG2023|consen 213 IDKFLEILFALANDEDPEVRKNVCRALVFLLEVR-PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKE 291 (885)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc-HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHH
Confidence 4455554 46888999999999997664322 222222 23455556 889999999999999988887311000
Q ss_pred ----cccccchHHhh----------hcc-ch---------------------------------------------hhHH
Q 039154 83 ----HAHVLLPPLET----------LCT-VE---------------------------------------------ETCM 102 (211)
Q Consensus 83 ----~~~~llp~l~~----------l~~-d~---------------------------------------------~~~V 102 (211)
+...|+|+|.+ |++ ++ +|..
T Consensus 292 ~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNL 371 (885)
T KOG2023|consen 292 VLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNL 371 (885)
T ss_pred HHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccH
Confidence 11222333221 222 11 1667
Q ss_pred HHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHH
Q 039154 103 RDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMV 179 (211)
Q Consensus 103 R~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~V 179 (211)
|.-.+.+|.-++..++.+- -.+++|+++.....+.|.||.+..-.+++++++.-+- +...++|.+++++.|..|-|
T Consensus 372 RkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV 450 (885)
T KOG2023|consen 372 RKCSAAALDVLANVFGDEL-LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV 450 (885)
T ss_pred hhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence 8888888888888887654 6789999999999999999999999999999886554 56789999999999999999
Q ss_pred HHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154 180 RRSAASNLRKFAATVEPAHLKTDIMSIFEDL 210 (211)
Q Consensus 180 R~aaa~~l~~~~~~~~~~~~~~~llp~~~~L 210 (211)
|+..+=.|..+++.+-.+...+.+.|++..|
T Consensus 451 RsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 451 RSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred eeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 9999999999999998877778888887654
No 12
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.97 E-value=5.7e-09 Score=72.44 Aligned_cols=82 Identities=18% Similarity=0.157 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCC
Q 039154 102 MRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM 176 (211)
Q Consensus 102 VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~ 176 (211)
-|..++-+|..++-.++.. ...+.++|.+....+|+.|+||+++|+.+..++...+.+ +..++++.+.+++.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3788888888888888775 456778999999999999999999999999999888877 56788888899999999
Q ss_pred HHHHHHH
Q 039154 177 PMVRRSA 183 (211)
Q Consensus 177 ~~VR~aa 183 (211)
+.||.+|
T Consensus 82 ~~Vr~~a 88 (97)
T PF12755_consen 82 ENVRSAA 88 (97)
T ss_pred hhHHHHH
Confidence 9999987
No 13
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.1e-08 Score=88.23 Aligned_cols=197 Identities=17% Similarity=0.189 Sum_probs=159.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCCChHHHHHHHHHHHhccccccCc--cccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLL 88 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~ll 88 (211)
+..++...-|..+.+|..|......+-+.+.....+.-+.|.+..+.+..+.=..++.+-+|.++..... +.+...++
T Consensus 218 lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~ii 297 (569)
T KOG1242|consen 218 LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLI 297 (569)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhh
Confidence 5667777778889999999999999999999888876666666665555777777888888876663321 44667889
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH--------------------------------------HHhhHHHH
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDL--------------------------------------VDWFIPLV 130 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~--------------------------------------~~~l~p~i 130 (211)
|.+.+-+.|..+.||+++.+++.+++...+..++ -..++|.+
T Consensus 298 P~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL 377 (569)
T KOG1242|consen 298 PVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPIL 377 (569)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHH
Confidence 9999999999999999999999999988644322 23478888
Q ss_pred HHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHH
Q 039154 131 KRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMS 205 (211)
Q Consensus 131 ~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp 205 (211)
.+-..+.+...++.++..+..++..+..+ +...|+|-+..-..|..|+||..+++.|+.+.+-+|...+ ..++|
T Consensus 378 ~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p 456 (569)
T KOG1242|consen 378 KRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIP 456 (569)
T ss_pred HHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-ccccc
Confidence 88888888888899999999999988443 6788999999999999999999999999999999987665 66666
Q ss_pred HHH
Q 039154 206 IFE 208 (211)
Q Consensus 206 ~~~ 208 (211)
.+.
T Consensus 457 ~l~ 459 (569)
T KOG1242|consen 457 ELS 459 (569)
T ss_pred HHH
Confidence 654
No 14
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.95 E-value=6.9e-09 Score=96.83 Aligned_cols=181 Identities=14% Similarity=0.084 Sum_probs=150.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhC---Cc---chhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccC-----
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALG---EE---RTPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVG----- 79 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg---~~---~~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig----- 79 (211)
-+.-.+.+....+|..|+..|.++-..+. +. ...++|+|-+.. ++| ....||.+-|.+|+.++...-
T Consensus 466 Y~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~ 545 (1431)
T KOG1240|consen 466 YFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLEL 545 (1431)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHH
Confidence 34556778889999999877766654332 22 377899999999 888 667799999999999988421
Q ss_pred -----------c-----------cc----cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh
Q 039154 80 -----------G-----------VE----HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL 133 (211)
Q Consensus 80 -----------~-----------~~----~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l 133 (211)
. ++ ..+.+-.....|+.|+++-||.+-++++..+|..||.+...+.+++.+...
T Consensus 546 ~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTf 625 (1431)
T KOG1240|consen 546 TQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITF 625 (1431)
T ss_pred HHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHH
Confidence 0 01 112233456679999999999999999999999999999999999999999
Q ss_pred hcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 134 AAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 134 ~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
.+|..|+.|.+.-..+..++-.+|.. ..+.++|++.+-+.|.++.|=..|..++.-+++.
T Consensus 626 LNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 626 LNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred hcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999988 6789999999999999999999998888888775
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.92 E-value=2.3e-08 Score=89.10 Aligned_cols=176 Identities=21% Similarity=0.178 Sum_probs=125.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
-++.+.+.++|+|+..|..|++.++.++ .....+.+.|.+.+ +.|++|.||+.|+..+..+.+. .++.....+.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~ 154 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVEDELI 154 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHGGHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHHHHH
Confidence 3778889999999999999999998765 55666888999999 8999999999999999998874 3333222278
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcChhH---HH---------------------------------------Hhh
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESD---LV---------------------------------------DWF 126 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~---~~---------------------------------------~~l 126 (211)
|.+..++.|.++.|+.+|+..+..+ ..+++. .. ..+
T Consensus 155 ~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~ 232 (526)
T PF01602_consen 155 PKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRI 232 (526)
T ss_dssp HHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHH
T ss_pred HHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHH
Confidence 9999999999999999999999888 222221 11 123
Q ss_pred HHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 127 ~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
++.+..+..+.++.|+..++..+..+.+... ....+.+.+.++++++++.||..+...+..++...
T Consensus 233 i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 233 IEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 3333333334444455555555554433221 45667777778888888888888888777777765
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2.6e-08 Score=88.42 Aligned_cols=185 Identities=17% Similarity=0.182 Sum_probs=137.0
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHH---------------------------------H-hCCcchhhchhhhh
Q 039154 8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIAR---------------------------------A-LGEERTPKELIPFL 53 (211)
Q Consensus 8 ~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~---------------------------------~-lg~~~~~~~L~p~l 53 (211)
+--+..++++-.|+|..+|.++...+...-. . -+.....++..-|+
T Consensus 12 l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yi 91 (885)
T KOG2023|consen 12 LQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYI 91 (885)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHH
Confidence 3446666666668888888888777664421 0 00011112222333
Q ss_pred hh-----cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh-------H
Q 039154 54 SA-----NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES-------D 121 (211)
Q Consensus 54 ~~-----~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~-------~ 121 (211)
.+ +.|.++.+|.+...-+..++. .|+-..+..++|.|.+++..++....+.|..+|.++++..... .
T Consensus 92 Ks~~l~~lgd~~~lIr~tvGivITTI~s-~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~r 170 (885)
T KOG2023|consen 92 KSECLHGLGDASPLIRATVGIVITTIAS-TGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTR 170 (885)
T ss_pred HHHHHhhccCchHHHHhhhhheeeeeec-ccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccC
Confidence 22 346666677666555555555 3455678899999999999999999999999999999885432 1
Q ss_pred HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 122 LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 122 ~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
--+.++|.+.++.+.++...|..+..++..+...-.+. .-++++..++.|.+|++|+||+..+.++.-+...
T Consensus 171 pl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 171 PLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred chHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 23679999999999999999999999999888877776 4688999999999999999999999999887764
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.79 E-value=1.9e-07 Score=83.31 Aligned_cols=167 Identities=21% Similarity=0.197 Sum_probs=116.0
Q ss_pred HHHhcCC--CHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHH
Q 039154 15 TDELKND--DIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91 (211)
Q Consensus 15 ~~~l~s~--~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l 91 (211)
.+-+++. +...|..+++.+-- ...+|.+- ..+.+-+.+ +..++.+.|+.+--.+..+... .++..-.+.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~l~kli~-~~~~G~~~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l~~n~l 84 (526)
T PF01602_consen 10 AKILNSFKIDISKKKEALKKLIY-LMMLGYDI--SFLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLILIINSL 84 (526)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHHH-HHHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHH-HHHcCCCC--chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHHHHHHH
Confidence 3344444 77788888877744 45777643 366666666 6778888888776666665541 222233344556
Q ss_pred hhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHh
Q 039154 92 ETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQL 171 (211)
Q Consensus 92 ~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L 171 (211)
.+=++++++.+|..|+.++..++ ..+..+.+.|.+.++..|+++.||+.|+..+..++...+......+.+.+.++
T Consensus 85 ~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~l 160 (526)
T PF01602_consen 85 QKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQL 160 (526)
T ss_dssp HHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHH
T ss_pred HHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhh
Confidence 56667778888988888888877 34555678888888888888889998888888887774443322278888888
Q ss_pred cCCCCHHHHHHHHHhhHHH
Q 039154 172 CQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 172 ~~D~~~~VR~aaa~~l~~~ 190 (211)
++|+++.|+.+|+..+.++
T Consensus 161 L~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 161 LSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp TTHSSHHHHHHHHHHHHHH
T ss_pred ccCCcchhHHHHHHHHHHH
Confidence 8988899998888888887
No 18
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2.9e-07 Score=81.26 Aligned_cols=194 Identities=18% Similarity=0.201 Sum_probs=146.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-hhhchhhhhhh-cCCChHH-HHHHHHHHHhccccccCcccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-TPKELIPFLSA-NNDDDDE-VLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-~~~~L~p~l~~-~~D~~~~-VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
+..+.+.+++.....|..+...+.-+.+-.|.+. ....++--+.+ .+|..+- .|..+.-++......+| .....++
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyi 214 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYI 214 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchH
Confidence 3445555666777777777666665555555443 22333444455 6676544 44456666666666777 3445566
Q ss_pred chHHhhh---ccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HH
Q 039154 88 LPPLETL---CTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LK 161 (211)
Q Consensus 88 lp~l~~l---~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~ 161 (211)
+|++-.+ ..|....||.+|..+...+...++...++..+.+.+..+-++ .|+-+.++.+.++.+....+.+ +.
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence 6555444 457788999999999999999999999999999999988777 9999999999999998888877 67
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154 162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF 207 (211)
Q Consensus 162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~ 207 (211)
.+++|...+-+.|..++||+++...+.+++..++-.. .+.++|.+
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~L 338 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTL 338 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHH
Confidence 8999999999999999999999999999999998554 45555654
No 19
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=98.77 E-value=2.7e-08 Score=88.83 Aligned_cols=164 Identities=14% Similarity=0.193 Sum_probs=143.8
Q ss_pred hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH
Q 039154 45 TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV 123 (211)
Q Consensus 45 ~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~ 123 (211)
....++|.+.+ ..-.+.-||.-+.+++.++++++.++...+.|+|-+.....|.++.+|+.+++++..++.+++...+.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 34446666666 55666779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHH-HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHH
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTD 202 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~ 202 (211)
..++.++.++..|+.-..|+...-+++++++.+.... ..-+...|.+-++|+-+--|.+....+......++...+...
T Consensus 407 ~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~k 486 (690)
T KOG1243|consen 407 GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANK 486 (690)
T ss_pred HHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhh
Confidence 9999999999999999999999999999999887774 345667788888999988899999999999999998888888
Q ss_pred HHHHHH
Q 039154 203 IMSIFE 208 (211)
Q Consensus 203 llp~~~ 208 (211)
|+|.+.
T Consensus 487 Ilp~l~ 492 (690)
T KOG1243|consen 487 ILPSLV 492 (690)
T ss_pred cccccc
Confidence 888764
No 20
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.76 E-value=2.1e-07 Score=78.56 Aligned_cols=159 Identities=26% Similarity=0.355 Sum_probs=104.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp 89 (211)
++.+...+++.+..+|..+...+..+ | ....+|.+.. +.|.++.||..++..|+.+ |.+.. .|
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~----~----~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----~~~~a----~~ 108 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGEL----G----SEEAVPLLRELLSDEDPRVRDAAADALGEL----GDPEA----VP 108 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhh----c----hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----CChhH----HH
Confidence 67788889899999999888776543 2 2455777777 8899999999999988884 33332 23
Q ss_pred HHhhhcc-chhhHHHHHHHHHHHHHHhhcC---------hhH--------------H------------HHhhHHHHHHh
Q 039154 90 PLETLCT-VEETCMRDKAVESLCRIGSQMR---------ESD--------------L------------VDWFIPLVKRL 133 (211)
Q Consensus 90 ~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~---------~~~--------------~------------~~~l~p~i~~l 133 (211)
.+..+++ |++..||..|+.+|..+...-. .+. . .....+.+..+
T Consensus 109 ~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~ 188 (335)
T COG1413 109 PLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIEL 188 (335)
T ss_pred HHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence 3333333 8899999999999888866531 100 0 01134444555
Q ss_pred hcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 134 AAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 134 ~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
..|....||..++..++.+.... ..+.+.|.+...|+.+.||..++..++.+
T Consensus 189 l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 189 LEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred HhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 55556666666666666554433 24566777777777777777777766543
No 21
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.74 E-value=1.9e-06 Score=66.49 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhh
Q 039154 22 DIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEET 100 (211)
Q Consensus 22 ~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~ 100 (211)
|+.+|.+++-.++.++...+ ..-+..+|.+.. +.|+++.||+.+...|..+.. -|--.....++.-+..++.|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~-~d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL-EDMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCceeehhhhhHHHHHHHcCCCH
Confidence 67899999999999987776 445677888888 999999999999999988776 23334455665666678899999
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCc
Q 039154 101 CMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWF 139 (211)
Q Consensus 101 ~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~ 139 (211)
.||..|...+.++....+++.+.+.+.+.+..+.+...|
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~ 116 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEH 116 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcccc
Confidence 999999999999999999999999999999999876544
No 22
>PTZ00429 beta-adaptin; Provisional
Probab=98.74 E-value=8.3e-07 Score=82.02 Aligned_cols=175 Identities=15% Similarity=0.130 Sum_probs=139.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
.+..+.+.|+|.+...|..+++.+-. .-.+|.+ -..++|-+.+ ...++.++|+-+--.+...++. .++..-..+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa-~mt~G~D--vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalLaI 107 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIA-NMTMGRD--VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALLAV 107 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHH-HHHCCCC--chHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHHHH
Confidence 57888999999999999999988733 3467853 3578888888 7888999999998888776652 122233445
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHH
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSI 167 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~ 167 (211)
+.|.+=++|.++.||-.|+.+|..+. ...+.+.+++.+++...|++.-||+.++-++.+++...+.- ....+.+.
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~ 183 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIR----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD 183 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence 77888888999999999999887753 34567788888999999999999999999999998765543 23467888
Q ss_pred HHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 168 YTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 168 ~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
+..|+.|+++.|...|...|.++...
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 88899999999999999999888754
No 23
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.72 E-value=4.6e-07 Score=81.63 Aligned_cols=197 Identities=18% Similarity=0.221 Sum_probs=145.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh--cCCChHH-HHHHHHHHHhccccccCcccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDE-VLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~--~~D~~~~-VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
|-.++-..|+..+--|.++++.|..=|...|.+-.=+.++|++.+ +.|++.. +-+.+-.-|..+-... .-..+.|
T Consensus 365 i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlv--rpYVhkI 442 (1172)
T KOG0213|consen 365 IMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLV--RPYVHKI 442 (1172)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccc--hhceeee
Confidence 445566677888999999999999999999999888999999988 6777654 3233333333332211 1234456
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhcCh---------h------HH----------------HHhhHHHHHHhhcC
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRE---------S------DL----------------VDWFIPLVKRLAAG 136 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---------~------~~----------------~~~l~p~i~~l~~d 136 (211)
|-.+.-++-|++.-.|...-+.+.+++...|. + .+ -..++|+++..|++
T Consensus 443 LvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~S 522 (1172)
T KOG0213|consen 443 LVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGS 522 (1172)
T ss_pred EEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc
Confidence 66667777777777776554444444333221 1 11 13489999999999
Q ss_pred C-CchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc---hhhHHHHHHHHHh
Q 039154 137 E-WFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP---AHLKTDIMSIFED 209 (211)
Q Consensus 137 ~-~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~---~~~~~~llp~~~~ 209 (211)
. +|.-|..+.++...++..+|-. +...++.+..+++.|+...||..+|.++..+++..+| +.+-+-+-|+|+.
T Consensus 523 kkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 523 KKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred ccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 8 9999999999999988888776 5678899999999999999999999999999999776 6666677787764
No 24
>PTZ00429 beta-adaptin; Provisional
Probab=98.65 E-value=1.8e-06 Score=79.87 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=129.9
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc-cccc
Q 039154 9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE-HAHV 86 (211)
Q Consensus 9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~-~~~~ 86 (211)
.-++.+.+.++|.|+.+|-.|++.++.| .....-+.+++.+.+ +.|.+|.||++++-++..+-.. .++. ....
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~I----r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~-~pelv~~~~ 179 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCI----RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD-DMQLFYQQD 179 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-Ccccccccc
Confidence 4588999999999999999999988764 344555677778888 9999999999999999998763 2322 2345
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHH
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 164 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l 164 (211)
+++.+.+++.|.+..|...|+..|..+.+.-+.. ....++..++..+-+-..| -...+.+.+....+. ..+....+
T Consensus 180 ~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW-~Qi~IL~lL~~y~P~-~~~e~~~i 257 (746)
T PTZ00429 180 FKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEW-GQLYILELLAAQRPS-DKESAETL 257 (746)
T ss_pred hHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChH-HHHHHHHHHHhcCCC-CcHHHHHH
Confidence 7788889999999999999999999998765432 2233333333334333445 234445555332222 12234677
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 165 RSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 165 ~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
+......++...+.|--+|++.+-.+....+++
T Consensus 258 l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~ 290 (746)
T PTZ00429 258 LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE 290 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence 888888888899999999999988887665544
No 25
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.65 E-value=1.4e-06 Score=73.54 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=105.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCCChHHHHHHHHHHHhcccccc---------Cc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYV---------GG 80 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~i---------g~ 80 (211)
-+..+.+.+.+.++.+|-.++..|+. +|.+.....++.++.. |.+..||..++..|+.+...- ..
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~aLg~----~~~~~a~~~li~~l~~--d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~ 148 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAADALGE----LGDPEAVPPLVELLEN--DENEGVRAAAARALGKLGDERALDPLLEALQD 148 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHc--CCcHhHHHHHHHHHHhcCchhhhHHHHHHhcc
Confidence 36677778888888888887775543 3444443333333332 778888888888887754311 00
Q ss_pred cc--------------------------cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhh
Q 039154 81 VE--------------------------HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLA 134 (211)
Q Consensus 81 ~~--------------------------~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~ 134 (211)
+. ......+.+..++.|+...||..|+.++..++... ..+.+.+.+..
T Consensus 149 ~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~ 222 (335)
T COG1413 149 EDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKAL 222 (335)
T ss_pred chhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHh
Confidence 00 01122344555555555555555555555555443 46778899999
Q ss_pred cCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhH
Q 039154 135 AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLR 188 (211)
Q Consensus 135 ~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~ 188 (211)
+|++|.||..++..++.+... .-.+.+...+.|.++.+|..++..++
T Consensus 223 ~~~~~~vr~~~~~~l~~~~~~-------~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 223 SDESLEVRKAALLALGEIGDE-------EAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred cCCCHHHHHHHHHHhcccCcc-------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence 999999999999998876433 45677788899999999998888776
No 26
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.62 E-value=3e-07 Score=62.14 Aligned_cols=85 Identities=27% Similarity=0.239 Sum_probs=65.1
Q ss_pred hHHhhhc-cchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHH
Q 039154 89 PPLETLC-TVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI 167 (211)
Q Consensus 89 p~l~~l~-~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~ 167 (211)
|.|.+.+ +|+++.||..|+..|.++. ....+|.+.++.+|++|.||..++..++.+ | ..+..+.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~---~~~~~~~ 66 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRI----G---DPEAIPA 66 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H---HHHTHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C---CHHHHHH
Confidence 4444544 8889999999999988442 235678888888999999999999999877 2 2467778
Q ss_pred HHHhcCC-CCHHHHHHHHHhhH
Q 039154 168 YTQLCQD-DMPMVRRSAASNLR 188 (211)
Q Consensus 168 ~~~L~~D-~~~~VR~aaa~~l~ 188 (211)
+.++++| +++.||.+|+.+|+
T Consensus 67 L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 67 LIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHhhcC
Confidence 8887766 45778999998875
No 27
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2.4e-06 Score=77.44 Aligned_cols=170 Identities=17% Similarity=0.207 Sum_probs=134.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchH
Q 039154 12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (211)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~ 90 (211)
+.++..|.|........|++++-.+ +....-.+.++|-+.+ ....+.+|++-+=-.|-..++. .++..-.=+..
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~---iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdLALLSInt 112 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIAL---IAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDLALLSINT 112 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHH---HhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCceeeeHHH
Confidence 4567778788888888898877543 3455557899999999 8889999999998888887762 22222122456
Q ss_pred HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHH
Q 039154 91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 170 (211)
Q Consensus 91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~ 170 (211)
|.+-++|.+..+|..|+..|..+ .-..+...++-.+++.+.|.+..||..+|..+++++..-.. .+..|......
T Consensus 113 fQk~L~DpN~LiRasALRvlSsI----Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e-~k~qL~e~I~~ 187 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSI----RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE-QKDQLEEVIKK 187 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhc----chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh-hHHHHHHHHHH
Confidence 89999999999999999888765 22334556677789999999999999999999999876444 45699999999
Q ss_pred hcCCCCHHHHHHHHHhhHHHH
Q 039154 171 LCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 171 L~~D~~~~VR~aaa~~l~~~~ 191 (211)
|+.|.+|.|=-+|+.++.+++
T Consensus 188 LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 188 LLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred HhcCCCCcchhHHHHHHHHhc
Confidence 999999999999998886654
No 28
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.62 E-value=3.2e-07 Score=62.03 Aligned_cols=85 Identities=34% Similarity=0.440 Sum_probs=55.6
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 11 IAVLTDEL-KNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 11 l~~l~~~l-~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
|+.+++.| ++.++.+|..++..++. +| ..+.+|.+.+ +.|+++.||..++..|+.+ |. ....
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~----~~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~----~~~~ 64 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE----LG----DPEAIPALIELLKDEDPMVRRAAARALGRI----GD----PEAI 64 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC----CT----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HH----HHTH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH----cC----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC----HHHH
Confidence 45667777 77778888777777762 22 2356777777 7778888888888888875 32 2355
Q ss_pred hHHhhhccch-hhHHHHHHHHHHH
Q 039154 89 PPLETLCTVE-ETCMRDKAVESLC 111 (211)
Q Consensus 89 p~l~~l~~d~-~~~VR~~a~~~l~ 111 (211)
+.+.+++.++ +..||..|+.+|+
T Consensus 65 ~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHhhcC
Confidence 5666655544 4567777777764
No 29
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.62 E-value=2.2e-06 Score=79.39 Aligned_cols=191 Identities=14% Similarity=0.071 Sum_probs=155.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhC--Ccchhhchh-hhhhh-cCCChHHHHHHHHHHHhccccccCc--cccccc
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALG--EERTPKELI-PFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHV 86 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg--~~~~~~~L~-p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~ 86 (211)
.+.+++.|.+-..|.+|+..+..+-..-+ .......++ .++.. ..|.+-.|-..++..|..++..++. ..+...
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~ 336 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN 336 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence 46778889999999999999888776555 333334444 44444 7899999999999999999998775 334556
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HH
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LK 161 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~ 161 (211)
++|.+-.-+.+....+|+.+.+++..+++.-+ ...+.+.+..+.++.+...|..|...+.......+.. ..
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~ 412 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV 412 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH
Confidence 77888888899999999999999999999433 3457778888899999999999988888887776622 57
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154 162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF 207 (211)
Q Consensus 162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~ 207 (211)
..+.|......+|.+..||.++...++.+.+++|.+.+...|-++.
T Consensus 413 ~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 413 KTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 8899999999999999999999999999999999988877776655
No 30
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.60 E-value=1.2e-06 Score=75.84 Aligned_cols=149 Identities=18% Similarity=0.048 Sum_probs=107.7
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 11 IAVLTDEL-KNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 11 l~~l~~~l-~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
+..++..+ .+++..+|..++..+... +. ...+..+.+ +.|.++.||.+++++|+. ++.+. ..
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~------~~--~~~~~~L~~~L~d~~~~vr~aaa~ALg~----i~~~~----a~ 119 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQ------ED--ALDLRSVLAVLQAGPEGLCAGIQAALGW----LGGRQ----AE 119 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhcc------CC--hHHHHHHHHHhcCCCHHHHHHHHHHHhc----CCchH----HH
Confidence 66778888 466788887665554221 11 122566666 778888899999999998 44443 34
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~ 168 (211)
+.|..+++++++.||..++..+..... .-.+.+..+.+|++..||..++..++.+... ...+.+
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a~~~L 183 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPRR-------LSESTL 183 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------cchHHH
Confidence 556667789999999999977776221 1234566666799999999999999988643 345566
Q ss_pred HHhcCCCCHHHHHHHHHhhHHHH
Q 039154 169 TQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 169 ~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
...+.|.++.||.+|+..+..+.
T Consensus 184 ~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 184 RLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred HHHHcCCCHHHHHHHHHHHHHcC
Confidence 77799999999999999986663
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.58 E-value=5e-07 Score=72.13 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=107.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC-cccccccc
Q 039154 12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG-GVEHAHVL 87 (211)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig-~~~~~~~l 87 (211)
..+...++|.+..+-..|+.-+..++..+|..- .-..++|.+.+ +.|....||.++...|..+.+.++ .. ..+
T Consensus 56 ~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~---~~~ 132 (228)
T PF12348_consen 56 DAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP---KIL 132 (228)
T ss_dssp HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH---HHH
Confidence 356667777788888899999999999999863 34567787777 889999999999999999999776 22 234
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhcC--hhH-----HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQMR--ESD-----LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~--~~~-----~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~ 159 (211)
.+.+...+++.++.||..++..+..+.+..+ ... ..+.+.+.+.++.+|+...||.++-..+..++..+|..
T Consensus 133 ~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 133 LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 7888999999999999999999999999998 222 23568999999999999999999999999998877765
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.55 E-value=3.1e-06 Score=75.50 Aligned_cols=185 Identities=18% Similarity=0.173 Sum_probs=142.9
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---cccc
Q 039154 9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEHA 84 (211)
Q Consensus 9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~~ 84 (211)
+|...+.+.|.+.+.+.=..+|..|..+-....+......+.|++.. +.++++.||.-++.+++.++..-++ --..
T Consensus 38 ~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 38 LPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred chHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 44445777787777766667788888888877777778888899999 9999999999999999888764322 1134
Q ss_pred cccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh-HH-HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---
Q 039154 85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES-DL-VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--- 159 (211)
Q Consensus 85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~-~~-~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~--- 159 (211)
..+++.+...+.|++..|...|++.|..+++.-..- .+ ...+.+.+..+...++-.+|.-+.+.+..++..-...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 568899999999999999999999999999753221 12 3334777788777766667777777887776554333
Q ss_pred -HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 160 -LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 160 -~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
....+++.+++.+++++..||.+|+.-+.+++..
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 2234899999999999999999999999999983
No 33
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=1.8e-06 Score=77.95 Aligned_cols=178 Identities=16% Similarity=0.128 Sum_probs=134.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCC---cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccc-------cCc------
Q 039154 18 LKNDDIQLRLNSIRRLSTIARALGE---ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPY-------VGG------ 80 (211)
Q Consensus 18 l~s~~~~~R~~a~~~l~~ia~~lg~---~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~-------ig~------ 80 (211)
-.++|.++|..|.+-|.+|....=. ....+.|+++... ...++++|...+.+-|.++++- .|.
T Consensus 226 tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~ 305 (859)
T KOG1241|consen 226 TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGL 305 (859)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4588899999998888887643211 1233446666666 7788999998888888766552 110
Q ss_pred c--------ccccccchHHhh-hcc------chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhH
Q 039154 81 V--------EHAHVLLPPLET-LCT------VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSA 145 (211)
Q Consensus 81 ~--------~~~~~llp~l~~-l~~------d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~ 145 (211)
+ ...+.++|.|.+ |.+ |++|.+-++|-.+|.-+++..+.+.+. +++|+|++-.+.++|+-|.++
T Consensus 306 ~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaa 384 (859)
T KOG1241|consen 306 PPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAA 384 (859)
T ss_pred CchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHH
Confidence 0 112367777544 444 224677788888887777777766654 999999999999999999999
Q ss_pred HhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 146 CGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 146 a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
+-.|+.+-.+-.+. .....+|..+++..|++-+||.+++-+|+.+++.++.
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh
Confidence 99999998877766 4577889999999999999999999999999999864
No 34
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.53 E-value=4.9e-06 Score=73.88 Aligned_cols=185 Identities=17% Similarity=0.241 Sum_probs=151.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHH
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l 91 (211)
.|++.|||-|.+.|.+|...++-|++++||. +++-.+.. +.-++..-|..-+-.++.++++.|+- .++|.+
T Consensus 734 eLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~l 805 (975)
T COG5181 734 ELVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTL 805 (975)
T ss_pred HHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHH
Confidence 5789999999999999999999999999984 44556665 77778888888888888888888763 467887
Q ss_pred hhhccchhhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc---CCChH-HHHHHH
Q 039154 92 ETLCTVEETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP---SAPDI-LKTELR 165 (211)
Q Consensus 92 ~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~---~~~~~-~~~~l~ 165 (211)
..=..-.+..|+....+++.-+.+-.+.. +.-..+.|++.....|...-.|..++..+--++. ..|.+ ..-.|+
T Consensus 806 m~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLl 885 (975)
T COG5181 806 MSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLL 885 (975)
T ss_pred HhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHH
Confidence 77777788999999999999988887764 4446688999999999999899998888876644 44444 456777
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHH
Q 039154 166 SIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMS 205 (211)
Q Consensus 166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp 205 (211)
+++..-.-|++|.|-.+.-..+..++..+|+..+..++..
T Consensus 886 NllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~q 925 (975)
T COG5181 886 NLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQ 925 (975)
T ss_pred HHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 7777778899999999999999999999999877776654
No 35
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.49 E-value=1.3e-06 Score=77.46 Aligned_cols=197 Identities=18% Similarity=0.206 Sum_probs=143.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh--cCCChHH-HHHHHHHHHhccccccCcccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDE-VLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~--~~D~~~~-VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
+-.++-..|+.++--|.++++.|..-|...|++..-+.++|++.+ +.|++.. |-+.+-.-|..+-.. ..-..+.|
T Consensus 170 v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl--~~pyvhkI 247 (975)
T COG5181 170 VYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDL--KVPYVHKI 247 (975)
T ss_pred HHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccc--cccceeeE
Confidence 445566677888999999999999999999999999999999987 7777654 334443334333321 12234455
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhcCh---------------hHH----------------HHhhHHHHHHhhcC
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRE---------------SDL----------------VDWFIPLVKRLAAG 136 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---------------~~~----------------~~~l~p~i~~l~~d 136 (211)
+-....++-|++.-+|...-+.+.+++...|. +.+ -+.++|++..+|.+
T Consensus 248 LvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~S 327 (975)
T COG5181 248 LVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGS 327 (975)
T ss_pred EEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcC
Confidence 55556666777777776553333333333211 000 24589999999999
Q ss_pred C-CchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc---hhhHHHHHHHHHh
Q 039154 137 E-WFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP---AHLKTDIMSIFED 209 (211)
Q Consensus 137 ~-~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~---~~~~~~llp~~~~ 209 (211)
. +|.-|..+..+...++..+|-. ....++.+.-+++.|+..-||..+|.++..+++..+| +.+-.-+-|+|+.
T Consensus 328 rkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g 407 (975)
T COG5181 328 RKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEG 407 (975)
T ss_pred ccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 8 9999999999999999888876 5677889999999999999999999999999999876 5665667777653
No 36
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.48 E-value=7.2e-06 Score=74.14 Aligned_cols=185 Identities=18% Similarity=0.162 Sum_probs=146.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCC-hHHHHHHHHHHHhccccccCccc--cccccchHHhh
Q 039154 18 LKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDD-DDEVLLAMAEELGVFIPYVGGVE--HAHVLLPPLET 93 (211)
Q Consensus 18 l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~-~~~VR~~~a~~L~~l~~~ig~~~--~~~~llp~l~~ 93 (211)
+.+.|+-+|.-..+....+|+++|- ..|+||+.. |... +++-|++..+...+++-+.|-.- +...++.++..
T Consensus 485 idn~deYVRnttarafavvasalgi----p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~ 560 (1172)
T KOG0213|consen 485 IDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEH 560 (1172)
T ss_pred cccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 4577888999999999999999995 678999999 8765 89999999888888888777432 34456778899
Q ss_pred hccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHH
Q 039154 94 LCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRS 166 (211)
Q Consensus 94 l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~ 166 (211)
.+.|++..||.-++.++..+++..++ +.+...+-|+-+.......- +-.+..+.++-+++.+.++ +..+.+-
T Consensus 561 gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevml 639 (1172)
T KOG0213|consen 561 GLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVML 639 (1172)
T ss_pred hhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHH
Confidence 99999999999999999999888765 55556666776666555432 2345556677777777776 4556677
Q ss_pred HHHHhcCCCCHHHHHHHHHhhHHHHhhhC--chhhHHHHHHHH
Q 039154 167 IYTQLCQDDMPMVRRSAASNLRKFAATVE--PAHLKTDIMSIF 207 (211)
Q Consensus 167 ~~~~L~~D~~~~VR~aaa~~l~~~~~~~~--~~~~~~~llp~~ 207 (211)
++.+=.+-++.+.++...+-+.+.+..-| ++++..+++|.|
T Consensus 640 il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~f 682 (1172)
T KOG0213|consen 640 ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEF 682 (1172)
T ss_pred HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHH
Confidence 77777888999999999999999999876 679999999987
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=1.3e-05 Score=70.56 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=137.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccCccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGGVEHA 84 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~~~~~ 84 (211)
+...+..+.|++.+.+..+...+..+.+.-... -...-++|.+.+ + .++++.++..+|-+|.+++. |..+..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAs--gtse~T 145 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIAS--GTSEQT 145 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhc--Cchhhc
Confidence 677788899999999998888887664332221 144567899988 4 58889999999999999987 333322
Q ss_pred -----cccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--hHHH--HhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154 85 -----HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--SDLV--DWFIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 85 -----~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~~~~--~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
.--+|+|..++...+..||+.|+.+|++++..-+. +.+- ..+.|++.-+..+........+.-.+..+|..
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 23479999999999999999999999999988654 2222 23556666666665556666777788888877
Q ss_pred CChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 156 APDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 156 ~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
-.+. ....++|.+..|+++.+++|..-++-++.-+++
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 6332 568899999999999999999999998877765
No 38
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.48 E-value=3.1e-06 Score=78.03 Aligned_cols=193 Identities=13% Similarity=0.189 Sum_probs=140.6
Q ss_pred CCCCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhh-hh-cCCChHHHHHHHHHHHhccccccCc
Q 039154 3 MVDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFL-SA-NNDDDDEVLLAMAEELGVFIPYVGG 80 (211)
Q Consensus 3 ~~~~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l-~~-~~D~~~~VR~~~a~~L~~l~~~ig~ 80 (211)
|++.+..-+.-++.++.|....+|..++..|+.+|...+.+.. .+++.-+ .+ .+...+.--++..+.|+.++...|.
T Consensus 168 l~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~ 246 (1233)
T KOG1824|consen 168 LPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY-VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH 246 (1233)
T ss_pred CcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 3444444588889999999999999999999999988887654 3444433 44 4445555556777889998887774
Q ss_pred --cccccccchHHhhhc---cchhhHHHHHHHHHHHHHHhhcChhHH------HHhhHHHHHH---------------hh
Q 039154 81 --VEHAHVLLPPLETLC---TVEETCMRDKAVESLCRIGSQMRESDL------VDWFIPLVKR---------------LA 134 (211)
Q Consensus 81 --~~~~~~llp~l~~l~---~d~~~~VR~~a~~~l~~l~~~l~~~~~------~~~l~p~i~~---------------l~ 134 (211)
..+...+.|.+.+.+ +-++++.|++++.++..+....+.+.. .+.++.++.- ..
T Consensus 247 r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ 326 (1233)
T KOG1824|consen 247 RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL 326 (1233)
T ss_pred hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence 345677899999988 666789999999999999999877632 2333333310 00
Q ss_pred ---------------cCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 135 ---------------AGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 135 ---------------~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
+|-+|.||+++|+++..+...-.+- +...+-|..+.=.+|.+..||.-....+-.+.+..++
T Consensus 327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP 406 (1233)
T ss_pred hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence 0235999999999998876554432 5667778888888899999998888888777776654
No 39
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.47 E-value=3.2e-06 Score=65.24 Aligned_cols=109 Identities=18% Similarity=0.178 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHH
Q 039154 100 TCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMV 179 (211)
Q Consensus 100 ~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~V 179 (211)
+.||..++-+++.++...+. +-+..+|.+....+|+++.||..+...+..+...---..+..++..+..++.|++++|
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEI 79 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHH
Confidence 56777777777777777653 2244556666666777778888777777666433111134566666777778888888
Q ss_pred HHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154 180 RRSAASNLRKFAATVEPAHLKTDIMSIFEDL 210 (211)
Q Consensus 180 R~aaa~~l~~~~~~~~~~~~~~~llp~~~~L 210 (211)
|..|...+.++...-+|+.+.+.+..++..|
T Consensus 80 r~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 80 RSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 8888888888877777776666666665544
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.47 E-value=1.1e-06 Score=62.40 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=83.1
Q ss_pred ccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---
Q 039154 86 VLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--- 159 (211)
Q Consensus 86 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~--- 159 (211)
.++|.+.+++.+.++.+|..++.++..++...+. ..+...++|.+.++..|+..++|..++..+..++...+..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 4677777788888888999999999998876322 2334478888888888888899999999999998765432
Q ss_pred -HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154 160 -LKTELRSIYTQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 160 -~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
....+++.+.+++++.+..||+.++..|..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23457889999999999999999998887765
No 41
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.46 E-value=4e-07 Score=56.30 Aligned_cols=52 Identities=27% Similarity=0.215 Sum_probs=46.5
Q ss_pred chHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 139 FTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 139 ~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
|+||..++..++.++...+.. +..+++|.+..+++|+++.||.+|+..|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 789999999999987776665 6789999999999999999999999999864
No 42
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.46 E-value=6.5e-06 Score=71.38 Aligned_cols=156 Identities=17% Similarity=0.071 Sum_probs=106.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchH
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~ 90 (211)
++.+++.|.+.+..+|..+++.|++ +|.......|++. +.++++.||.++...++.... .-.+.
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~----i~~~~a~~~L~~~---L~~~~p~vR~aal~al~~r~~---------~~~~~ 151 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGW----LGGRQAEPWLEPL---LAASEPPGRAIGLAALGAHRH---------DPGPA 151 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhc----CCchHHHHHHHHH---hcCCChHHHHHHHHHHHhhcc---------ChHHH
Confidence 7899999999999999999888875 3554444444443 467888899888877776221 12345
Q ss_pred HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc------------CCCh
Q 039154 91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP------------SAPD 158 (211)
Q Consensus 91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~------------~~~~ 158 (211)
+..+++|+++.||..|+.+++.+... ...|.+.....|.+..||..++..+..+.. .-|.
T Consensus 152 L~~~L~d~d~~Vra~A~raLG~l~~~--------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~ 223 (410)
T TIGR02270 152 LEAALTHEDALVRAAALRALGELPRR--------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGG 223 (410)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhccc--------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCc
Confidence 66667788888999988888887654 334445566778888888887766654422 1111
Q ss_pred H--------H----HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 159 I--------L----KTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 159 ~--------~----~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
. . ....++.+..+++|+. ||.+++..++.+..
T Consensus 224 ~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 224 PHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLVGD 267 (410)
T ss_pred cHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence 1 0 1245666777888865 89999988886654
No 43
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=3e-06 Score=74.29 Aligned_cols=177 Identities=19% Similarity=0.137 Sum_probs=139.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccc--cccccchHHh
Q 039154 18 LKNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVE--HAHVLLPPLE 92 (211)
Q Consensus 18 l~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~--~~~~llp~l~ 92 (211)
..|.+-..|.-..-.+..++-.+|.+. +++-+-|.+.-+.|.+..||..+++.+.++++...++. +.+.|...+.
T Consensus 52 a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~ 131 (675)
T KOG0212|consen 52 AYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLC 131 (675)
T ss_pred ccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHH
Confidence 456666667666667777777899987 65666666666889999999999999999999776643 3455777788
Q ss_pred hhccchhhHHHHHHHHHHHHHHhhcChhHH----HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHH
Q 039154 93 TLCTVEETCMRDKAVESLCRIGSQMRESDL----VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELR 165 (211)
Q Consensus 93 ~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~----~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~ 165 (211)
++..|.+..||.+ ++-+..+.+....+.. -..++|.+..-..+-+...|.....-+.-+...-+-+ +...++
T Consensus 132 klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~l 210 (675)
T KOG0212|consen 132 KLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLL 210 (675)
T ss_pred HHhcCCccccccH-HHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHH
Confidence 8999999999865 4667777776655433 3558888888777778889999999888887766655 678999
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 166 SIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
+-+++.+.|+..+||.-+-..+.++...+.
T Consensus 211 dGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 211 DGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998888888764
No 44
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.43 E-value=3.5e-07 Score=49.80 Aligned_cols=30 Identities=40% Similarity=0.430 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 164 LRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
++|.+.++++|++|+||.+|+.+|+++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999998875
No 45
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.42 E-value=9.6e-06 Score=81.18 Aligned_cols=194 Identities=14% Similarity=0.121 Sum_probs=148.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchh-----hchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTP-----KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH 83 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~-----~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~ 83 (211)
-|..|++.|++.+...|.+|+-.|..++. +++..+ ...+|.+.+ +.+.+++++..++..|.++... |..
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~--~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~-~d~-- 563 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCC--HSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT-ADA-- 563 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhC--CcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-cch--
Confidence 46778888899999999999999999875 233222 245677777 8888899999999999998762 221
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH------HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV------DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~------~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~ 157 (211)
..++.+..++..++..++..++..+..+....+.++.. +--+|.+.+|.++++-+++..++..+..++..-.
T Consensus 564 --~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~ 641 (2102)
T PLN03200 564 --ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ 641 (2102)
T ss_pred --hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh
Confidence 23356667777777889999999999998877665432 3478999999999999999999999999987554
Q ss_pred hH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh----hHHHHHHHHHhh
Q 039154 158 DI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH----LKTDIMSIFEDL 210 (211)
Q Consensus 158 ~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~----~~~~llp~~~~L 210 (211)
+. .....+|.++.+++.....||+.++..|..+......+. +..-.+|.+.+|
T Consensus 642 d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~L 702 (2102)
T PLN03200 642 DLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKL 702 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHH
Confidence 43 346778999999999999999999999999997544432 223345555443
No 46
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.36 E-value=3.6e-06 Score=75.72 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=109.6
Q ss_pred ChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcC-C
Q 039154 59 DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAG-E 137 (211)
Q Consensus 59 ~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d-~ 137 (211)
+..+++..+.+++..+.+-...++..+.++|+|..-.+|.+.++++.++..+..+++.++-..+++.++|.+..++-- .
T Consensus 362 ~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt 441 (700)
T KOG2137|consen 362 DPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTT 441 (700)
T ss_pred CcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhccc
Confidence 344456666777777777777888888999998888889899999999999999999999888889999999888554 4
Q ss_pred CchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh--CchhhHHHHHHHHHhhC
Q 039154 138 WFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV--EPAHLKTDIMSIFEDLT 211 (211)
Q Consensus 138 ~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~--~~~~~~~~llp~~~~L~ 211 (211)
...||..|.-+++.+.+.+... ..+.+.|+ .+-.+-.+|.+--.+..-...++-.. |.+.+.+.++|+++-|+
T Consensus 442 ~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi-~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 442 NLYVKVNVLPCLAGLIQRLDKAAVLDELLPI-LKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS 517 (700)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh
Confidence 4678888888888888666655 34455555 44444445555555555444444333 34778888888887653
No 47
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=98.36 E-value=9.5e-07 Score=79.13 Aligned_cols=186 Identities=18% Similarity=0.189 Sum_probs=169.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp 89 (211)
+.-+....++.|-++|..-++++......|.++.....++|-+.. ..|.++-+|......+..++..+|....-..++-
T Consensus 332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr 411 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLR 411 (690)
T ss_pred hhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHH
Confidence 455677889999999999999999999999999999999999999 9999999999999999999999988777778899
Q ss_pred HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHH
Q 039154 90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIY 168 (211)
Q Consensus 90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~ 168 (211)
.|..+..|++..+|-...-+++++++.+.+......+.-.+.+-..|+...-|.+....+......+... ...+++|..
T Consensus 412 ~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l 491 (690)
T KOG1243|consen 412 YLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSL 491 (690)
T ss_pred HHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccc
Confidence 9999999999999999999999999999998888777777777889999999999999999998888877 678999999
Q ss_pred HHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 169 TQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 169 ~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
.-+.-|++..||..+-..+..+...+..
T Consensus 492 ~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 492 VPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred cccccCcccchhhHHHHHHHHHHhhhhh
Confidence 9999999999999999999888776654
No 48
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.36 E-value=2.5e-05 Score=67.37 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=129.7
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccCc---c
Q 039154 11 IAVLTDELKND-DIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGG---V 81 (211)
Q Consensus 11 l~~l~~~l~s~-~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~---~ 81 (211)
+..++.++.+. ..+.|..|+..|..+.-.=+.. +.-.+|+-.+.+ +.| .++..|+-+-..|..+.+.-.. +
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 45555666544 6888999999998875332222 223455555566 777 5555677777777777663211 1
Q ss_pred ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH--
Q 039154 82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-- 159 (211)
Q Consensus 82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-- 159 (211)
.....+...| +-.+|.++.|=..|.+.+..++....+...-..+.|.|.. .....-.++.+.+-.+++.+..+
T Consensus 368 stE~ai~K~L-eaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL 442 (516)
T KOG2956|consen 368 STEIAICKVL-EAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEEL 442 (516)
T ss_pred hHHHHHHHHH-HHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHH
Confidence 1112233333 4456777766666777767777777777666777888877 22233446667888899999988
Q ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDL 210 (211)
Q Consensus 160 --~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L 210 (211)
...++.|.+++-++..+..|||+|..+|..+...+|-+. +.|++..|
T Consensus 443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~----mePhL~~L 491 (516)
T KOG2956|consen 443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEE----MEPHLEQL 491 (516)
T ss_pred HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHh----hhhHhhhc
Confidence 468999999999999999999999999999999999653 45555544
No 49
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.34 E-value=1.7e-05 Score=79.51 Aligned_cols=181 Identities=13% Similarity=0.111 Sum_probs=130.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhCCcch------hhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc-----c
Q 039154 16 DELKNDDIQLRLNSIRRLSTIARALGEERT------PKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE-----H 83 (211)
Q Consensus 16 ~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~------~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~-----~ 83 (211)
+.|.++++..+..++..++.+......+.. ...-+|.+.+ +..+++.+++.++..|.++.. |..+ .
T Consensus 571 ~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a--~~~d~~~avv 648 (2102)
T PLN03200 571 ALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS--SRQDLCESLA 648 (2102)
T ss_pred HHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CChHHHHHHH
Confidence 334444444444444444444332222211 1245677777 777888899999988888776 2222 2
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhH----HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESD----LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~----~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~ 159 (211)
....+|++..+++..+..+|..|+.+|..+......+. +..-.+|.+.++.++.+-.++..++..+..++..-...
T Consensus 649 ~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~ 728 (2102)
T PLN03200 649 TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA 728 (2102)
T ss_pred HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH
Confidence 33457788888888889999999999999987544432 23447888888889998899999999998887765333
Q ss_pred ---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh
Q 039154 160 ---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH 198 (211)
Q Consensus 160 ---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~ 198 (211)
.....++.+.+++++..+++|+.|+..|.++++..+.+.
T Consensus 729 ~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 729 AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 345678999999999999999999999999999988765
No 50
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.32 E-value=7.7e-06 Score=73.67 Aligned_cols=191 Identities=14% Similarity=0.142 Sum_probs=151.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHh---ccccccCccccccccch
Q 039154 14 LTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELG---VFIPYVGGVEHAHVLLP 89 (211)
Q Consensus 14 l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~---~l~~~ig~~~~~~~llp 89 (211)
+++.+---|+.+.-.-.+.|..+-..+++.-....++|.+.+ +.++ ..| ...|+ .|++-....++...++|
T Consensus 278 fLD~l~~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~-~~v----p~~LP~v~~i~~~~s~~~~~~~~~p 352 (700)
T KOG2137|consen 278 FLDDLPQKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT-KMV----PIVLPLVLLIAEGLSQNEFGPKMLP 352 (700)
T ss_pred hcccccccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc-ccc----ccccchhhhhhhccchhhhhhhhhH
Confidence 444444457777777888899888888888888999999987 5322 111 11122 22222223445667788
Q ss_pred HHhhhcc-chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHH
Q 039154 90 PLETLCT-VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSI 167 (211)
Q Consensus 90 ~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~ 167 (211)
.+....+ -....++.-.++.+.-|.++.+++++.+.++|++.+-.+|..-.+-..+...++.+.+.+... .++.++|.
T Consensus 353 ~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~ 432 (700)
T KOG2137|consen 353 ALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPR 432 (700)
T ss_pred HHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHH
Confidence 8877777 556788889999999999999999999999999999999999988899999999999999877 57889999
Q ss_pred HHHhcC-CCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHh
Q 039154 168 YTQLCQ-DDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFED 209 (211)
Q Consensus 168 ~~~L~~-D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~ 209 (211)
+-+++. .....||..++-+++.+++.++.-.+.++++|++..
T Consensus 433 l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~ 475 (700)
T KOG2137|consen 433 LKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKC 475 (700)
T ss_pred hhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 988865 455899999999999999999999999999999864
No 51
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2.7e-06 Score=75.80 Aligned_cols=94 Identities=18% Similarity=0.111 Sum_probs=58.5
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--------hHHHHhhH
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--------SDLVDWFI 127 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--------~~~~~~l~ 127 (211)
+.|.++.||..+++.|-.+.+ +-+....+..-..+.++|++..||.+|++.+.-.++..+. .......+
T Consensus 207 ~~~~D~~Vrt~A~eglL~L~e---g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF 283 (823)
T KOG2259|consen 207 EHDQDFRVRTHAVEGLLALSE---GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAF 283 (823)
T ss_pred hcCCCcchHHHHHHHHHhhcc---cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHH
Confidence 566677777777777766665 2334445556666777777777777777777666666521 12233345
Q ss_pred HHHHHhhcCCCchHHHhHHhHHHhh
Q 039154 128 PLVKRLAAGEWFTARVSACGLFHIA 152 (211)
Q Consensus 128 p~i~~l~~d~~~~vR~~~a~~l~~l 152 (211)
..+.....|-+|.||.-+++.|+.+
T Consensus 284 ~~vC~~v~D~sl~VRV~AaK~lG~~ 308 (823)
T KOG2259|consen 284 SSVCRAVRDRSLSVRVEAAKALGEF 308 (823)
T ss_pred HHHHHHHhcCceeeeehHHHHhchH
Confidence 5555566677777777777766654
No 52
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.25 E-value=2.5e-05 Score=71.73 Aligned_cols=174 Identities=19% Similarity=0.227 Sum_probs=134.7
Q ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 11 IAVLTDE-LKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 11 l~~l~~~-l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
++.+-.. ++|.+...|+.|++.+-. .-..|.+ -..|+|-+.+ ..-.+.|+++-+=-.|..+++.-+ +..-.-+
T Consensus 20 ~~~~~sg~l~s~n~~~kidAmK~iIa-~M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lLav 94 (757)
T COG5096 20 VAALSSGRLESSNDYKKIDAMKKIIA-QMSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALLAV 94 (757)
T ss_pred HhhhccccccccChHHHHHHHHHHHH-HHhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHHHH
Confidence 4445555 889999999999988732 2345654 5778888777 668889999999888888877433 2222334
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH-HHHH
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE-LRSI 167 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~-l~~~ 167 (211)
+.+.+=++|+++.+|-.|+..+..+ +...+-..+++.++++.+|+...||+.|+.++.+++..-..-+.+. +...
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~ 170 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDI 170 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHH
Confidence 6666777899999999999887754 4557778899999999999999999999999999987644334444 7888
Q ss_pred HHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 168 YTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 168 ~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
+..|+.|++|.|-.+|..+|..+-.-
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh
Confidence 89999999999999999999766543
No 53
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.24 E-value=3.9e-06 Score=58.21 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=45.2
Q ss_pred ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH--HHhhHHHHHHhhcCCCchHHHhHH
Q 039154 82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL--VDWFIPLVKRLAAGEWFTARVSAC 146 (211)
Q Consensus 82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~--~~~l~p~i~~l~~d~~~~vR~~~a 146 (211)
...+.|+|++...+.|+++.||.+|.++|.++++....+.+ .+.+++.+.+++.|+..+||.++.
T Consensus 23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence 34455666666777777777777777777777777665543 456777777788888888887664
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.21 E-value=5.5e-06 Score=58.63 Aligned_cols=107 Identities=17% Similarity=0.031 Sum_probs=76.1
Q ss_pred hchhhhhhh-cCCChHHHHHHHHHHHhcccccc---CccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--h
Q 039154 47 KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYV---GGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--S 120 (211)
Q Consensus 47 ~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~i---g~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~ 120 (211)
..++|.+.+ +.+.++.+|..++..++.++..- ........++|.+..++.|+++.||..|+.+|..++...+. +
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 446777777 77777888888888888877631 11112336778888888888888888888888888876533 1
Q ss_pred H-HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhc
Q 039154 121 D-LVDWFIPLVKRLAAGEWFTARVSACGLFHIAY 153 (211)
Q Consensus 121 ~-~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~ 153 (211)
. ...-++|.+.++.++...++|..++..+..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 22347888888888888888888888877665
No 55
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.19 E-value=6.2e-05 Score=69.77 Aligned_cols=194 Identities=14% Similarity=0.189 Sum_probs=136.7
Q ss_pred CCCCcch--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhh----------------------------------
Q 039154 4 VDEPLYP--IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPK---------------------------------- 47 (211)
Q Consensus 4 ~~~~~~p--l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~---------------------------------- 47 (211)
.|++-+| +..++..|.+.|.++..-|++=++-+++.++.++.+.
T Consensus 40 Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~ 119 (1233)
T KOG1824|consen 40 LDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPS 119 (1233)
T ss_pred ccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCc
Confidence 3455555 8899999999999999999999998887776654221
Q ss_pred -----------chhhhhhh---cCCChHHHHHHHHHHHhccccccCc--cccccccchHHhhhccchhhHHHHHHHHHHH
Q 039154 48 -----------ELIPFLSA---NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVEETCMRDKAVESLC 111 (211)
Q Consensus 48 -----------~L~p~l~~---~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~ 111 (211)
.+.|.+.+ .+.+..-++..+.+.++.+....|+ .++...++..+.--+......||..|+.+++
T Consensus 120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~ 199 (1233)
T KOG1824|consen 120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALG 199 (1233)
T ss_pred cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHH
Confidence 11122222 1122222444444444443333332 2234445555555556666789999999999
Q ss_pred HHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhc---CCCCHHHHHHHHH
Q 039154 112 RIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLC---QDDMPMVRRSAAS 185 (211)
Q Consensus 112 ~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~---~D~~~~VR~aaa~ 185 (211)
.++...+.+-....+--.+++|.+......-..-..+++.++...|.. ....++|...+.| +-.+-+.|..+.+
T Consensus 200 ~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQ 279 (1233)
T KOG1824|consen 200 HLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQ 279 (1233)
T ss_pred HHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHH
Confidence 999999999888888888889988766543334457788888888876 4678999999999 7778899999999
Q ss_pred hhHHHHhhhCch
Q 039154 186 NLRKFAATVEPA 197 (211)
Q Consensus 186 ~l~~~~~~~~~~ 197 (211)
.++.|....+.+
T Consensus 280 ale~fl~rcp~e 291 (1233)
T KOG1824|consen 280 ALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHHhChhh
Confidence 999999988774
No 56
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=8.6e-05 Score=67.38 Aligned_cols=182 Identities=21% Similarity=0.181 Sum_probs=142.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH-------HhCCc--------------chhhchhhhhhh-c-C------CChH
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIAR-------ALGEE--------------RTPKELIPFLSA-N-N------DDDD 61 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~-------~lg~~--------------~~~~~L~p~l~~-~-~------D~~~ 61 (211)
.+..+..++|+|.++.+.++.-=+.|+. ..|.. ..-..++|.+.+ + + ||++
T Consensus 261 faitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdW 340 (859)
T KOG1241|consen 261 FAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDW 340 (859)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccC
Confidence 4556788999999999988877665442 22211 122377888876 2 2 3456
Q ss_pred HHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCCC
Q 039154 62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGEW 138 (211)
Q Consensus 62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~~ 138 (211)
.+-++++..|.-+++.+| ++...+++|.+++=++.++|.=|++|+-+++.+.+--.+.... +..+|.+..+-.|++
T Consensus 341 np~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s 419 (859)
T KOG1241|consen 341 NPAKAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS 419 (859)
T ss_pred cHHHHHHHHHHHHHHHhc-ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence 699999999999999776 4567799999999999999999999999999998887776554 457899988888999
Q ss_pred chHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 139 FTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 139 ~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
-.||.+++-.|+.++..+... .....++.+..-++| +|.|-..++-.+..+++.+
T Consensus 420 l~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~ 479 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAA 479 (859)
T ss_pred hhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHH
Confidence 999999999999998887654 445677777777777 4788888888888888665
No 57
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=1.5e-05 Score=71.73 Aligned_cols=140 Identities=20% Similarity=0.162 Sum_probs=115.8
Q ss_pred hhhhh-cCCChHHHHHHHHHHHhccccccCccccc---ccc----chHHhhhccchhhHHHHHHHHHHHHHHhh----cC
Q 039154 51 PFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA---HVL----LPPLETLCTVEETCMRDKAVESLCRIGSQ----MR 118 (211)
Q Consensus 51 p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~---~~l----lp~l~~l~~d~~~~VR~~a~~~l~~l~~~----l~ 118 (211)
|++.. ++-.+.+||..|+.-+-++-+..|++.+. ..+ ...+..|++|+-+.||..|++.+.++... ++
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 77888 88899999999999999999988875532 223 35678899999999999999988877655 58
Q ss_pred hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 119 ESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 119 ~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
+..+.+.+-..+-.++.|.+-.||.++.+.++.+...-... ..+.++|.+-.+++|++..||-|+..-|-.+
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 88888888888899999999999999999999885442222 5788999999999999999999998876544
No 58
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=5.1e-05 Score=66.81 Aligned_cols=179 Identities=17% Similarity=0.172 Sum_probs=138.1
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCCcc----hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc
Q 039154 11 IAVLTDELK-NDDIQLRLNSIRRLSTIARALGEER----TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA 84 (211)
Q Consensus 11 l~~l~~~l~-s~~~~~R~~a~~~l~~ia~~lg~~~----~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~ 84 (211)
+..+.+-|+ ++++..|.+|+-.|..||.-- ++. ...--+|.|.. +...++.|+..+.-+||+++.. ++...
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagd--s~~~R 187 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGD--SPDCR 187 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccC--ChHHH
Confidence 566777886 666999999999999998421 122 23344699888 8999999999999999998862 23333
Q ss_pred cc------cchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154 85 HV------LLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 85 ~~------llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
.+ +.|++..+..+........++.+|.++|..-.+ -..-..++|.+.++..+....|..-+|-.+..+...
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 22 335555555555568888999999999988743 255678999999999999999999898888888766
Q ss_pred CChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 156 APDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 156 ~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
-.+. ......|.++.|+...++.|+..|.+.+|+++.
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence 5544 356788999999999999999999999999654
No 59
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=5.9e-05 Score=69.21 Aligned_cols=184 Identities=16% Similarity=0.150 Sum_probs=133.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCC-ChHHHHHHHHHHHhccccccCc--ccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANND-DDDEVLLAMAEELGVFIPYVGG--VEHAHVL 87 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D-~~~~VR~~~a~~L~~l~~~ig~--~~~~~~l 87 (211)
++..++.++++|+-+=++|++.+..++...+ +..-..+..++.+..+ ..++-|.-+.++++++++-.|. ......|
T Consensus 770 l~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~L 848 (982)
T KOG4653|consen 770 LAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVL 848 (982)
T ss_pred HHHHHHHhcccCceeeHHHHHHHHHHHHhcc-hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHH
Confidence 7889999999999999999998888876643 3444455555555223 3356666777888888887764 2334467
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhcC---hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----H
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQMR---ESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----L 160 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~---~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~ 160 (211)
+..+.....|++...|.++..+++.++.... .+.+.+.+.-.+.-...|++.-||++|+..+..+-...|.+ .
T Consensus 849 i~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpil 928 (982)
T KOG4653|consen 849 INTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPIL 928 (982)
T ss_pred HHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHH
Confidence 7778888888888899999999999999876 34444444444444566999999999999999999988876 1
Q ss_pred HHHHHHHHHH----hcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 161 KTELRSIYTQ----LCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 161 ~~~l~~~~~~----L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
+..+...+.. .+.+++-.+|..+..++.++-..+.
T Consensus 929 r~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~ 967 (982)
T KOG4653|consen 929 RLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALE 967 (982)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 2222333222 3567778899999999888877765
No 60
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.06 E-value=0.00055 Score=59.75 Aligned_cols=198 Identities=15% Similarity=0.103 Sum_probs=141.9
Q ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c-CCChHHHHHHHHHHHhccccc--cCcccccc
Q 039154 11 IAVLTDE-LKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPY--VGGVEHAH 85 (211)
Q Consensus 11 l~~l~~~-l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~--ig~~~~~~ 85 (211)
++.+++. .++.+...|..+++.+..+.+..+.+..-+.++..+.+ . ....+.-|..+.+.+.-+.+- +-+.....
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~ 270 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT 270 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH
Confidence 3445555 44566899999999999999998776644555555544 3 344555555555555433332 12333455
Q ss_pred ccchHHhhhccchhhHHHHHHHHHHHHHHhhcC---------------hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHH
Q 039154 86 VLLPPLETLCTVEETCMRDKAVESLCRIGSQMR---------------ESDLVDWFIPLVKRLAAGEWFTARVSACGLFH 150 (211)
Q Consensus 86 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~---------------~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~ 150 (211)
.++.-|..++.| +.+...+++++.-+....+ ++.+..+++|.+.+..++..-..|......+.
T Consensus 271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 271 ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 566667777777 7788999999998877732 24567788999988877766667877778888
Q ss_pred hhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHH---HHHHHHHhhC
Q 039154 151 IAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKT---DIMSIFEDLT 211 (211)
Q Consensus 151 ~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~---~llp~~~~L~ 211 (211)
.+...++.+ ....++|++++-+.=+++.||.++...+..+...- ++.+.+ .|+|.+-+||
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~LL~ls 415 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIPRLLKLS 415 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhcC
Confidence 888888887 56889999999999999999999999999998876 444443 6777777664
No 61
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.04 E-value=6.5e-05 Score=64.85 Aligned_cols=145 Identities=15% Similarity=0.117 Sum_probs=108.2
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccc
Q 039154 11 IAVLTDELKN-DDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (211)
Q Consensus 11 l~~l~~~l~s-~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ 86 (211)
|..+.+-|.+ .+...|..|.+.|.++.+.=... .+.-.+-..+....|..++|-+.+++..-..+....+......
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~ 410 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN 410 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHH
Confidence 3445555655 67888999999999887544332 2333333344447888888888888876665555556666667
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHH---hhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD---WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~---~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~ 159 (211)
|.|++.. +++..-.++++-+-++++.++.|+..+ .+.|.+.+-+.+.+-.||+.+.+++..++..+|.+
T Consensus 411 i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~ 482 (516)
T KOG2956|consen 411 ISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME 482 (516)
T ss_pred HhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence 7777655 445566688899999999999998765 57899999999999999999999999999999943
No 62
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=7.7e-05 Score=71.98 Aligned_cols=200 Identities=18% Similarity=0.183 Sum_probs=135.9
Q ss_pred CCCCcch-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh---cCCCh-HHHHHHHHHHHhcccccc
Q 039154 4 VDEPLYP-IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA---NNDDD-DEVLLAMAEELGVFIPYV 78 (211)
Q Consensus 4 ~~~~~~p-l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~---~~D~~-~~VR~~~a~~L~~l~~~i 78 (211)
||+-+.. ++.|+.+|.|..--+|.++|-.|..+-+-=..+...+++-.++.. ..||- +.||.++-.....+.+.+
T Consensus 1033 vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 678888898999999999999888876544444555555544443 45665 448887755444444421
Q ss_pred ----------CccccccccchHHhh-hccchhhHHHHHHHHHHHHHHhhcChhH--------------------------
Q 039154 79 ----------GGVEHAHVLLPPLET-LCTVEETCMRDKAVESLCRIGSQMRESD-------------------------- 121 (211)
Q Consensus 79 ----------g~~~~~~~llp~l~~-l~~d~~~~VR~~a~~~l~~l~~~l~~~~-------------------------- 121 (211)
.+.+....++|.+.. -.-..-.+||..++..+.++.+.-|...
T Consensus 1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHH
Confidence 134566778887533 2225567899999999888877754310
Q ss_pred ---------------------------------------HHHhhHHHHHHhhcCC-CchHHHhHHhHHHhhccCCChH--
Q 039154 122 ---------------------------------------LVDWFIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-- 159 (211)
Q Consensus 122 ---------------------------------------~~~~l~p~i~~l~~d~-~~~vR~~~a~~l~~l~~~~~~~-- 159 (211)
.-..++|.+.++.... .-..|.+||..+..+...+|.+
T Consensus 1193 s~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt 1272 (1702)
T KOG0915|consen 1193 SLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT 1272 (1702)
T ss_pred HHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC
Confidence 0122444444443332 2446777888888888888887
Q ss_pred -HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHH
Q 039154 160 -LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDI 203 (211)
Q Consensus 160 -~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~l 203 (211)
+..+++...+...+|..+.||++.+.+.+.+++.-.++..+..+
T Consensus 1273 P~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi 1317 (1702)
T KOG0915|consen 1273 PYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI 1317 (1702)
T ss_pred cchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 67889999999999999999999999999999988776654443
No 63
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.97 E-value=8.2e-06 Score=44.30 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=15.5
Q ss_pred hHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154 126 FIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (211)
Q Consensus 126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~ 154 (211)
++|.+.++.+|++|+||.+++..++.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555543
No 64
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.94 E-value=0.0012 Score=55.33 Aligned_cols=201 Identities=15% Similarity=0.103 Sum_probs=132.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HhCCc---chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC----c
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIAR-ALGEE---RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG----G 80 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~-~lg~~---~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig----~ 80 (211)
.|...++.+.+.....|..+++.+..+-. ..-++ ..+..|+..+.. +.....+-+..++..++-++=.+| .
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 48899999998899999999988876542 22222 234556666666 555444555667777887777776 2
Q ss_pred cccccccchHHhhhccchh--hHHHHHHHHHHHHHHhhcCh--hHHHH--hhHH-HHHH--hhcCC---------CchHH
Q 039154 81 VEHAHVLLPPLETLCTVEE--TCMRDKAVESLCRIGSQMRE--SDLVD--WFIP-LVKR--LAAGE---------WFTAR 142 (211)
Q Consensus 81 ~~~~~~llp~l~~l~~d~~--~~VR~~a~~~l~~l~~~l~~--~~~~~--~l~p-~i~~--l~~d~---------~~~vR 142 (211)
++....+.|.|...+.|.. ..+|.+++.+|+-++-..+. +.+.. ..+. .+.. ...|. ...+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 4556678899999999885 46788888888876555433 33221 1222 1111 11122 24577
Q ss_pred HhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc---h---hhHHHHHHHHHhh
Q 039154 143 VSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP---A---HLKTDIMSIFEDL 210 (211)
Q Consensus 143 ~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~---~---~~~~~llp~~~~L 210 (211)
.++....+-+...++.. .....+|.|..+++.++.+||.+|..++.-+...... + .-...|+..+..|
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~L 281 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLREL 281 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHH
Confidence 77777777777777763 3566889999999999999999999999866554431 1 2344455555554
No 65
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=2.3e-05 Score=65.93 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=124.6
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchh---hhhhhcCCChHHHHHHHHHHHhccccccCccc----cccccch
Q 039154 17 ELKNDDIQLRLNSIRRLSTIARALGEERTPKELI---PFLSANNDDDDEVLLAMAEELGVFIPYVGGVE----HAHVLLP 89 (211)
Q Consensus 17 ~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~---p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~----~~~~llp 89 (211)
.++|.++.....+...++.+|-..|.......+. |++.+...+.-+|+..+...+.+++.. .... +.-- +.
T Consensus 93 llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGa-L~ 170 (550)
T KOG4224|consen 93 LLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGA-LE 170 (550)
T ss_pred HHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccc-hh
Confidence 3567777777777777777766665544333333 466666666777887777777777764 2111 1112 34
Q ss_pred HHhhhccchhhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHH
Q 039154 90 PLETLCTVEETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKT 162 (211)
Q Consensus 90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~ 162 (211)
++..|.+-++..||..+..+|..+-+.-... -+..--+|++..+.+.....||+.|+..++.++-.--.. ...
T Consensus 171 pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 171 PLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred hhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 4555888889999999999998886654322 223335899999999999999999999998875432211 235
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 163 ELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 163 ~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
+++|.++.|..|.++.|+.-|..+|+.++.-
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd 281 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASD 281 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhccc
Confidence 6999999999999999999999999998864
No 66
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.91 E-value=0.0008 Score=60.19 Aligned_cols=187 Identities=18% Similarity=0.181 Sum_probs=124.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC---cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc--ccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGE---ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV--EHA 84 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~---~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~--~~~ 84 (211)
...+...|+++++.+|..+++.+..++..-+. --....++|.+.. +.|++.+|...+++.|..+++.-.+- -+.
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~ 158 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD 158 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC
Confidence 46677889999999999999998776532211 0244678899988 89999999999999999998743221 112
Q ss_pred cccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh--HH-HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh-H-
Q 039154 85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES--DL-VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-I- 159 (211)
Q Consensus 85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~-~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~-~- 159 (211)
+.+.+.|..++...++.+|..+.+.+..++..-+.- .+ .+-+++.+.+..+++.--+|.++++.+..++..-.. +
T Consensus 159 ~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~y 238 (503)
T PF10508_consen 159 SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQY 238 (503)
T ss_pred cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHH
Confidence 333777888888878899999999988887654331 11 223677777766777778999999999999883222 1
Q ss_pred -HHHHHHHHHHHh----cCCC-CHHHHH-HHHHhhHHHHhhhCchh
Q 039154 160 -LKTELRSIYTQL----CQDD-MPMVRR-SAASNLRKFAATVEPAH 198 (211)
Q Consensus 160 -~~~~l~~~~~~L----~~D~-~~~VR~-aaa~~l~~~~~~~~~~~ 198 (211)
.+..+++.+.++ -.|+ ...+.- .....+++++.. +|..
T Consensus 239 L~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~ 283 (503)
T PF10508_consen 239 LEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQE 283 (503)
T ss_pred HHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHH
Confidence 223344444444 4455 233332 222455555554 4433
No 67
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.91 E-value=9.6e-06 Score=50.01 Aligned_cols=53 Identities=25% Similarity=0.162 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhccccccCc--cccccccchHHhhhccchhhHHHHHHHHHHHHH
Q 039154 61 DEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVEETCMRDKAVESLCRI 113 (211)
Q Consensus 61 ~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l 113 (211)
|.||..++..||.++...+. ......++|.|..+++|+++.||..|+.+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57888888888887764332 234556778888888888778888888887654
No 68
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.0003 Score=64.79 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=65.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccc-
Q 039154 9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV- 86 (211)
Q Consensus 9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~- 86 (211)
..++.+.+.+++.|+..|-.|++-++.+ +-...-..+++-+.+ ..|.+++||+.|+-++..+-+ ++.+...+.
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~l~~~~g 166 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKDLYHELG 166 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHhhhhccc
Confidence 3466677777777777777777666543 333333444555555 677777777777777776655 444444444
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHHhh
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIGSQ 116 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~ 116 (211)
..-.+..+..|+++.|-..|+-+|..+.+.
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 555566777777777777777777666655
No 69
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.89 E-value=8.4e-05 Score=65.96 Aligned_cols=163 Identities=13% Similarity=0.041 Sum_probs=120.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC--cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 12 AVLTDELKNDDIQLRLNSIRRLSTIARALGE--ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~--~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
.-++-.+.|.|..+|..+++.|..+...+|+ +..-+-|+.-+.+ .-|-++-||+.|...|-.+.+.-|.++ ..+.
T Consensus 94 ~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~~ 171 (885)
T COG5218 94 YHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRIV 171 (885)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHHH
Confidence 3445567899999999999999999999998 5566667766777 889999999999999999887555433 3455
Q ss_pred hHHhhhc-cchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhH-HhHHHhhccCCChHHHHHHHH
Q 039154 89 PPLETLC-TVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSA-CGLFHIAYPSAPDILKTELRS 166 (211)
Q Consensus 89 p~l~~l~-~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~-a~~l~~l~~~~~~~~~~~l~~ 166 (211)
.+|..+. .|+...||..|.-.+. +.+.-.|++..-+.|.+-..|+++ +.++|.++....-+..+.++
T Consensus 172 n~l~~~vqnDPS~EVRr~allni~----------vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~- 240 (885)
T COG5218 172 NLLKDIVQNDPSDEVRRLALLNIS----------VDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL- 240 (885)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHee----------eCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh-
Confidence 5655544 5778999999886653 235667888888888886666554 67777775544433333333
Q ss_pred HHHHhcCCCCHHHHHHHHHhh
Q 039154 167 IYTQLCQDDMPMVRRSAASNL 187 (211)
Q Consensus 167 ~~~~L~~D~~~~VR~aaa~~l 187 (211)
++.--+.|.+..||.+++..+
T Consensus 241 l~ewgl~dRe~sv~~a~~d~i 261 (885)
T COG5218 241 LMEWGLLDREFSVKGALVDAI 261 (885)
T ss_pred hhhhcchhhhhhHHHHHHHHH
Confidence 556668889999998888765
No 70
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=9e-05 Score=66.40 Aligned_cols=171 Identities=17% Similarity=0.146 Sum_probs=125.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CC-cc--hhh----chhhhhhh-cCCChHHHHHHHHHHHhccccc----
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARAL-GE-ER--TPK----ELIPFLSA-NNDDDDEVLLAMAEELGVFIPY---- 77 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~l-g~-~~--~~~----~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~---- 77 (211)
-+...+.|++++..+|.+|++.+.-.++.. ++ ++ +.. ..+.-+.. ..|-+..||..+++.||.+-++
T Consensus 236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~ 315 (823)
T KOG2259|consen 236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI 315 (823)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH
Confidence 345678899999999999999999888877 22 22 222 22233444 6788999999999999988763
Q ss_pred ---------cC------------------c-----------------cccccccc-----hHHhhhccchhhHHHHHHHH
Q 039154 78 ---------VG------------------G-----------------VEHAHVLL-----PPLETLCTVEETCMRDKAVE 108 (211)
Q Consensus 78 ---------ig------------------~-----------------~~~~~~ll-----p~l~~l~~d~~~~VR~~a~~ 108 (211)
.+ | ++....|+ ..|..-++||=.+||.+|+.
T Consensus 316 i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~ 395 (823)
T KOG2259|consen 316 IQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVA 395 (823)
T ss_pred HHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHH
Confidence 00 0 00111222 45677788999999999999
Q ss_pred HHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039154 109 SLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAAS 185 (211)
Q Consensus 109 ~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~ 185 (211)
++..++..-+. +...-+.++..+.+|+...||--+.+.+..++..+. .+++-++.+..-+.|.++.||.++-.
T Consensus 396 Sl~~La~ssP~--FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~--i~eeql~~il~~L~D~s~dvRe~l~e 468 (823)
T KOG2259|consen 396 SLCSLATSSPG--FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA--IREEQLRQILESLEDRSVDVREALRE 468 (823)
T ss_pred HHHHHHcCCCC--cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe--ecHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999876443 234556778888999999999999999888876632 45677888999999999999987644
No 71
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.00064 Score=65.94 Aligned_cols=198 Identities=15% Similarity=0.125 Sum_probs=139.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc----hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc-
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER----TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA- 84 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~----~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~- 84 (211)
++.+...+.|.||+.|.+.+==|-.+...+|... ..+++.-.|.. +.|+++-+.-.+++=||-+-+ +|+....
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe-lgd~~~k~ 898 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE-LGDSSLKK 898 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe-cCCchhHH
Confidence 4556666779999999998877777778888543 34555566666 778888888777777665544 2211111
Q ss_pred --------------------------------------------------------cccchHHhhhccch-hhHHHHHHH
Q 039154 85 --------------------------------------------------------HVLLPPLETLCTVE-ETCMRDKAV 107 (211)
Q Consensus 85 --------------------------------------------------------~~llp~l~~l~~d~-~~~VR~~a~ 107 (211)
..++.-|++|++.. -|.-|..|+
T Consensus 899 ~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaA 978 (1702)
T KOG0915|consen 899 SLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAA 978 (1702)
T ss_pred HHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchh
Confidence 11233345555544 366677788
Q ss_pred HHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHH
Q 039154 108 ESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRS 182 (211)
Q Consensus 108 ~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~a 182 (211)
-.++.|++.-+.+ .....++|.+-+.-=||.-.|+.+...+-..+...-..- +.++++.-++.-|.+.+|.||.+
T Consensus 979 fGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVRea 1058 (1702)
T KOG0915|consen 979 FGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREA 1058 (1702)
T ss_pred hchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 8888877776443 344667888888888999889998888888886653332 66777777788899999999999
Q ss_pred HHHhhHHHHhhhCchhhHHHHHHHHHh
Q 039154 183 AASNLRKFAATVEPAHLKTDIMSIFED 209 (211)
Q Consensus 183 aa~~l~~~~~~~~~~~~~~~llp~~~~ 209 (211)
++-+|.++..-=+.+.+.+++.-+|..
T Consensus 1059 sclAL~dLl~g~~~~~~~e~lpelw~~ 1085 (1702)
T KOG0915|consen 1059 SCLALADLLQGRPFDQVKEKLPELWEA 1085 (1702)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 999999999987778877777666543
No 72
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00022 Score=65.60 Aligned_cols=186 Identities=15% Similarity=0.114 Sum_probs=132.5
Q ss_pred CCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC--cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc
Q 039154 6 EPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGE--ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE 82 (211)
Q Consensus 6 ~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~--~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~ 82 (211)
-+..|++.-+.++.++-+..|..++..+..+.+.-.+ -.....++-++.+ +.|+++.|-..+.+-+..+++.
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev----- 798 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV----- 798 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-----
Confidence 4567899999999999999999999999888763222 2345667777788 9999999999998877777774
Q ss_pred cccccchHHhhhccch----hhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154 83 HAHVLLPPLETLCTVE----ETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (211)
Q Consensus 83 ~~~~llp~l~~l~~d~----~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~ 156 (211)
.-+.++|.+.+....+ ...-|...=+++.+++...|.= .....++..+.+...|+.-+-|.+.+.+++.++...
T Consensus 799 y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 799 YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 2345666655422222 1234555557777777777652 334466777777777888888999999999998765
Q ss_pred ChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 157 PDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 157 ~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
.-. +-+-+..+..-.-.|.++-||++|+.-+..+....|.
T Consensus 879 a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 879 AFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred hhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence 422 2233333333334599999999999999999998885
No 73
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.00052 Score=62.15 Aligned_cols=164 Identities=12% Similarity=0.017 Sum_probs=111.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC--cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGE--ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~--~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
+.-++...+|.+..+|-.+++.|..+.-..+. +..-+.|..-+.. +.|-+|.||..|..+|..+..--+.+ .-.+
T Consensus 87 f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--e~~v 164 (892)
T KOG2025|consen 87 FYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--ECPV 164 (892)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--cccH
Confidence 34556677899999999999988766542222 2333444444555 88999999999999999887532322 2345
Q ss_pred chHHhhhcc-chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhH-HhHHHhhccCCChHHHHHHH
Q 039154 88 LPPLETLCT-VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSA-CGLFHIAYPSAPDILKTELR 165 (211)
Q Consensus 88 lp~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~-a~~l~~l~~~~~~~~~~~l~ 165 (211)
..++..+++ |+++.||.+|..++.. .+.-+|+|..-+.|.+-.+|+.+ ..+++++ . +-....++..
T Consensus 165 ~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d-~r~lsi~krv 232 (892)
T KOG2025|consen 165 VNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-D-LRSLSIDKRV 232 (892)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-h-hhhhhHHHHH
Confidence 556666555 6689999999877643 35567888888888887777765 4555665 2 1111234666
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhH
Q 039154 166 SIYTQLCQDDMPMVRRSAASNLR 188 (211)
Q Consensus 166 ~~~~~L~~D~~~~VR~aaa~~l~ 188 (211)
.++..-++|.+..||+|+...+.
T Consensus 233 ~LlewgLnDRe~sVk~A~~d~il 255 (892)
T KOG2025|consen 233 LLLEWGLNDREFSVKGALVDAIL 255 (892)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHH
Confidence 67777788888888888876553
No 74
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.00022 Score=60.17 Aligned_cols=184 Identities=18% Similarity=0.158 Sum_probs=125.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC--cc--
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG--GV-- 81 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig--~~-- 81 (211)
+..+.+.++|.|+.+|-.++..++.||-.--.. ++.-.++|-+.+ ..|.++.|+..++.+|++++..-. -+
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 556888999999999999999999887211111 233448898888 778889999999999998876210 00
Q ss_pred ---------------------------------------ccccccchHHhhhccch-hhHHHHHHHHHHHHHHhhcCh--
Q 039154 82 ---------------------------------------EHAHVLLPPLETLCTVE-ETCMRDKAVESLCRIGSQMRE-- 119 (211)
Q Consensus 82 ---------------------------------------~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l~~-- 119 (211)
....-++.+|..++... +..++..|+..|-.++..-..
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~ 369 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNV 369 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhh
Confidence 00111222344444433 455677777777777664322
Q ss_pred -hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC-ChH--HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 120 -SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA-PDI--LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 120 -~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~-~~~--~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
..+..--+|.+..|.-|....||.-...+|..++..- .++ ....+.|+++.+..|++.+||-.+|.+|.++..-.
T Consensus 370 ~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 370 SVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 2344557899999999998877776666665553322 122 23567899999999999999999999999987654
No 75
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00098 Score=62.77 Aligned_cols=197 Identities=16% Similarity=0.124 Sum_probs=134.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC--cccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG--GVEHAHVL 87 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig--~~~~~~~l 87 (211)
++.+++.+++-|..+|=+|++.++.++..++++-..+.+-..+.- .--+++..++.++-.|+.++. -| .......+
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~-rGlLlps~l~dV 421 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL-RGLLLPSLLEDV 421 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh-cCCcchHHHHHH
Confidence 677888899999999999999999999999976543333222221 223367889999999988876 12 23345577
Q ss_pred chHHhhhccchh--------hHHHHHHHHHHHHHHhhcChhHHHHhhHH----HHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154 88 LPPLETLCTVEE--------TCMRDKAVESLCRIGSQMRESDLVDWFIP----LVKRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 88 lp~l~~l~~d~~--------~~VR~~a~~~l~~l~~~l~~~~~~~~l~p----~i~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
+|++..-+..++ ..||.+|...+=.++..-++...+..+-. ++....=|+...+|++++..|.+....
T Consensus 422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 888777666553 35899999999999999888776653322 233345588889999998888776554
Q ss_pred CCh-------------------------------HHHHHHHHHHHHhcC----CCCHHHHHHHHHhhHHHHhhhCchhhH
Q 039154 156 APD-------------------------------ILKTELRSIYTQLCQ----DDMPMVRRSAASNLRKFAATVEPAHLK 200 (211)
Q Consensus 156 ~~~-------------------------------~~~~~l~~~~~~L~~----D~~~~VR~aaa~~l~~~~~~~~~~~~~ 200 (211)
.|+ ++-....|.|-.|.. .=++.+|.-++.+|++++..-+ +...
T Consensus 502 ~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p-k~~a 580 (1133)
T KOG1943|consen 502 QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEP-KYLA 580 (1133)
T ss_pred CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH-Hhhc
Confidence 332 011223445555544 3457899999999999766544 4444
Q ss_pred -HHHHHHHHh
Q 039154 201 -TDIMSIFED 209 (211)
Q Consensus 201 -~~llp~~~~ 209 (211)
..+.|+++.
T Consensus 581 ~~~L~~lld~ 590 (1133)
T KOG1943|consen 581 DYVLPPLLDS 590 (1133)
T ss_pred ccchhhhhhh
Confidence 456666643
No 76
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.80 E-value=0.00077 Score=56.23 Aligned_cols=178 Identities=18% Similarity=0.248 Sum_probs=118.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc-----------cc
Q 039154 16 DELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV-----------EH 83 (211)
Q Consensus 16 ~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~-----------~~ 83 (211)
..++|.++.+|..+++-++..+ .+..+.. .+-++.+.+ ++.++++||..+.+.+-++.-.-|.+ ..
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~-Lld~~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCC-LLDKELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHH-HhChHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 5688999999999999997654 5666554 455666666 76669999999999998888766632 12
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHH--HhhcCh-hHH-HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRI--GSQMRE-SDL-VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l--~~~l~~-~~~-~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~ 159 (211)
...++.++..++.++++.+|..|++.+.++ ...+.. ..+ ...++-++.- ...++.+.|.+...-|+..+..-...
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p-~t~~~~~LrQ~L~~Ffp~y~~s~~~~ 190 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNP-STEDNQRLRQCLSVFFPVYASSSPEN 190 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCc-ccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence 346778889999999999999999999995 455555 333 3333333332 33345688988888888776543322
Q ss_pred ---HHHHHHHHHHHhcCCCC----HHHHHHHHHhhHHHHhhhCc
Q 039154 160 ---LKTELRSIYTQLCQDDM----PMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 160 ---~~~~l~~~~~~L~~D~~----~~VR~aaa~~l~~~~~~~~~ 196 (211)
..+-+.|.|..+++.+. +.-.-.+.+-...++...++
T Consensus 191 Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~ 234 (298)
T PF12719_consen 191 QERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDP 234 (298)
T ss_pred HHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCCh
Confidence 45667777777766433 23233333444444444443
No 77
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.79 E-value=0.00061 Score=60.49 Aligned_cols=166 Identities=13% Similarity=0.054 Sum_probs=115.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhc-CCChHHHHHHHHHHHhccccccCccccccccchHHhhh
Q 039154 16 DELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSAN-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL 94 (211)
Q Consensus 16 ~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~-~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l 94 (211)
.-+||.|.++...++.--+.|+. .+.-.+.-+.++.+. -...---|.+++..++.+.+.+....- =
T Consensus 270 ~~mks~nd~va~qavEfWstice---Eeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e----------d 336 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICE---EEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE----------D 336 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHH---HHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC----------C
Confidence 34777777777777766665542 122222222333331 112223455555566655544322110 0
Q ss_pred ccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHH
Q 039154 95 CTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQ 170 (211)
Q Consensus 95 ~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~ 170 (211)
..+++|.+-++|..+|.-+++..+...... ++.++.+-...++|+-|.+++-.|+.+-..-... ...+.+|-.+.
T Consensus 337 ~~~DdWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n 415 (858)
T COG5215 337 YYGDDWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN 415 (858)
T ss_pred ccccccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH
Confidence 134568899999999988888887776665 7888888889999999999999999998776666 46788899999
Q ss_pred hcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 171 LCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 171 L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
+..|+.-+|+.+.|-+++.+++++.
T Consensus 416 ~m~D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 416 EMSDSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred hcccceeehhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 78
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00052 Score=62.74 Aligned_cols=102 Identities=18% Similarity=0.213 Sum_probs=83.3
Q ss_pred CCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhh----hh-cCCChHHHHHHHHHHHhccccccC
Q 039154 5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFL----SA-NNDDDDEVLLAMAEELGVFIPYVG 79 (211)
Q Consensus 5 ~~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l----~~-~~D~~~~VR~~~a~~L~~l~~~ig 79 (211)
|..+.-|+-+...|++.|+..|-.|++-+..|- -.-+.|+. .+ ..|..+.||+.+|.+++.+-. ++
T Consensus 104 dLALLSIntfQk~L~DpN~LiRasALRvlSsIR--------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld 174 (968)
T KOG1060|consen 104 DLALLSINTFQKALKDPNQLIRASALRVLSSIR--------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LD 174 (968)
T ss_pred CceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CC
Confidence 566777999999999999999999999887651 12344553 45 789999999999999999877 55
Q ss_pred ccccccccchHHhhhccchhhHHHHHHHHHHHHHHhh
Q 039154 80 GVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQ 116 (211)
Q Consensus 80 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~ 116 (211)
++. ...|...++.|+.|..+-|--+|+-++..+|..
T Consensus 175 ~e~-k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 175 PEQ-KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred hhh-HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 554 448999999999999999988888888877654
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.0032 Score=57.31 Aligned_cols=177 Identities=10% Similarity=0.130 Sum_probs=126.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cC--CChHHHHHHHHHHHhccccccCcccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NN--DDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~--D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
...|.+.|.++||.+.-+|++-++++|+.-+... -.|-|.|.+ +. +.+++. .-+.+-++.+.++ . +.....+
T Consensus 183 FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--L~LAP~ffkllttSsNNWmL-IKiiKLF~aLtpl-E-PRLgKKL 257 (877)
T KOG1059|consen 183 FPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--LQLAPLFYKLLVTSSNNWVL-IKLLKLFAALTPL-E-PRLGKKL 257 (877)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--ccccHHHHHHHhccCCCeeh-HHHHHHHhhcccc-C-chhhhhh
Confidence 5678888888889888888888888887766443 356687777 33 344543 4455666666663 2 2344567
Q ss_pred chHHhhhccchh-hHHHHHHHHHHHHHHhhcC---hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH
Q 039154 88 LPPLETLCTVEE-TCMRDKAVESLCRIGSQMR---ESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE 163 (211)
Q Consensus 88 lp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l~---~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~ 163 (211)
+|.+-++..... .++=..|++++....-.-| .+..-+.++..+..+++|+....||-.+-++.++...=... ...
T Consensus 258 ieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~-Vqa 336 (877)
T KOG1059|consen 258 IEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA-VQA 336 (877)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH-HHH
Confidence 777777777664 5677777777766522222 23334567788888999999999999999999987765443 344
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 164 LRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
...+.++++.|.++.+|--|..-+..++..
T Consensus 337 ~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 337 HKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 567788999999999999998888777664
No 80
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.003 Score=55.19 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=78.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchh----hchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTP----KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAH 85 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~----~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~ 85 (211)
+..+.+..+|.+-..|..|++.|..+|.- -|...+ ..+.-++.. +.+.+.+|-..+...|..+.+.+...+...
T Consensus 260 ~~~la~ka~dp~a~~r~~a~r~L~~~as~-~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~ 338 (533)
T KOG2032|consen 260 LLSLANKATDPSAKSRGMACRGLGNTASG-APDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLES 338 (533)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhcc-CcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhh
Confidence 44555667788888999999999999876 344332 233455556 556678899999998888888777777778
Q ss_pred ccchH---HhhhccchhhHHHHHHHHHHHHHHhhc
Q 039154 86 VLLPP---LETLCTVEETCMRDKAVESLCRIGSQM 117 (211)
Q Consensus 86 ~llp~---l~~l~~d~~~~VR~~a~~~l~~l~~~l 117 (211)
+++++ +..+..++++.+|.+|.-.++.++..-
T Consensus 339 ~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 339 YLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred hchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 88877 566888999999999888777776664
No 81
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.00042 Score=62.74 Aligned_cols=139 Identities=13% Similarity=0.034 Sum_probs=106.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhh-------hhh-cCCChHHHHHHHHHHHhcc----ccccCcc
Q 039154 14 LTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPF-------LSA-NNDDDDEVLLAMAEELGVF----IPYVGGV 81 (211)
Q Consensus 14 l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~-------l~~-~~D~~~~VR~~~a~~L~~l----~~~ig~~ 81 (211)
+--.|+-.|.++|.+|+..+.+.-...|++.++++.-.+ +.. +.|+.|+||..+.+-+-.+ =..+.+.
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~ 258 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT 258 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH
Confidence 344688899999999999999998899998765554433 345 7899999999886655432 2223333
Q ss_pred ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhh
Q 039154 82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIA 152 (211)
Q Consensus 82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l 152 (211)
.....+-.++..++.|...+||.+..+.+..++..-....+.++++|.+.-+..|.+-+||.++...+-.+
T Consensus 259 i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 259 ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 33333334567788888889999999999999888777788899999999999999999999988777655
No 82
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.0013 Score=58.58 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=43.1
Q ss_pred hHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154 140 TARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 140 ~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
.||.++..++.+++...+.. .......++.+.++|.+-+||-.|+..+..+-
T Consensus 502 ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 502 IVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 47888889998888777666 45678888899999999999999998887664
No 83
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.51 E-value=0.0023 Score=53.72 Aligned_cols=166 Identities=22% Similarity=0.249 Sum_probs=118.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cCCCh--HHHHHHHHHHHhccccccCcc-c
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-NNDDD--DEVLLAMAEELGVFIPYVGGV-E 82 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~D~~--~~VR~~~a~~L~~l~~~ig~~-~ 82 (211)
+..+...+|....+.+.-|++.++-++-.+|+. ..-+.+.|.+.+ +.|.. +.+|.+++.+|+-..=+.|.+ +
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~ 167 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEE 167 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChh
Confidence 566777788888788888999999999999843 355577788888 77754 468888888888655432321 2
Q ss_pred cccccchHHhhh-----cc-c---------hhhHHHHHHHHHHHHHHhhcChhHHHH---hhHHHHHHhhcCCCchHHHh
Q 039154 83 HAHVLLPPLETL-----CT-V---------EETCMRDKAVESLCRIGSQMRESDLVD---WFIPLVKRLAAGEWFTARVS 144 (211)
Q Consensus 83 ~~~~llp~l~~l-----~~-d---------~~~~VR~~a~~~l~~l~~~l~~~~~~~---~l~p~i~~l~~d~~~~vR~~ 144 (211)
....++..++.+ .+ | ++..|..+|+.+-.-++..++...+.. ..+|.+..+...+.-.||.+
T Consensus 168 ~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiA 247 (309)
T PF05004_consen 168 ETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIA 247 (309)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 222222333311 11 2 235789999999999999999855543 46888999988999999999
Q ss_pred HHhHHHhhccCCCh-------HHHHHHHHHHHHhcCCCC
Q 039154 145 ACGLFHIAYPSAPD-------ILKTELRSIYTQLCQDDM 176 (211)
Q Consensus 145 ~a~~l~~l~~~~~~-------~~~~~l~~~~~~L~~D~~ 176 (211)
+.+.+.-+++.... +....+...+..|.+|..
T Consensus 248 AGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS~ 286 (309)
T PF05004_consen 248 AGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDSS 286 (309)
T ss_pred HHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhcc
Confidence 99999888765443 145678888888888764
No 84
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.48 E-value=0.013 Score=48.07 Aligned_cols=197 Identities=19% Similarity=0.175 Sum_probs=119.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc----hhhchhhhhhhcCCChHHHHHHHHHHHhccccc--cCcccccc
Q 039154 12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEER----TPKELIPFLSANNDDDDEVLLAMAEELGVFIPY--VGGVEHAH 85 (211)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~----~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~--ig~~~~~~ 85 (211)
+.+-+.|.|+|+..|..+++-|..+...++++. ..+-|+.++..--+|..-+..+ ...+..+.+. ++++. ..
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~-l~gl~~L~~~~~~~~~~-~~ 79 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPA-LKGLLALVKMKNFSPES-AV 79 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHH-HHHHHHHHhCcCCChhh-HH
Confidence 356678999999999999999999999999753 3355667777722566666554 5666555532 22222 22
Q ss_pred ccchHHhhhccch--hhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCC------------------chHHH
Q 039154 86 VLLPPLETLCTVE--ETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEW------------------FTARV 143 (211)
Q Consensus 86 ~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~------------------~~vR~ 143 (211)
.++..+.+-.... -..+|..+.+-+..+.+..... .....++..+.++++.+. |....
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~ 159 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISE 159 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccch
Confidence 2222222211211 2457888888888777765332 112223333333333221 11111
Q ss_pred hHHhHHHhhccCC-----------------------------ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 144 SACGLFHIAYPSA-----------------------------PDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 144 ~~a~~l~~l~~~~-----------------------------~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
.+-..|..++.++ .+.+....+|.++.=+..+.+.|+.-+.+.|..-+..+
T Consensus 160 ~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 160 FAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred hHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 1111111111111 11155678888888888889999999999999999999
Q ss_pred CchhhHHHHHHHHHhh
Q 039154 195 EPAHLKTDIMSIFEDL 210 (211)
Q Consensus 195 ~~~~~~~~llp~~~~L 210 (211)
|++.+..++.++|..|
T Consensus 240 ~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 240 GADSLSPHWSTIWNAL 255 (262)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 85
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.44 E-value=0.0071 Score=50.44 Aligned_cols=153 Identities=13% Similarity=0.103 Sum_probs=115.5
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH-----------HH
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL-----------VD 124 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~-----------~~ 124 (211)
.+..++.||..+.+.||-++- ++. +....-++.+...++.++..||..|++++-.+.-..|.+.. ..
T Consensus 36 v~~~~~~vR~~al~cLGl~~L-ld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~ 113 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLGLCCL-LDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSK 113 (298)
T ss_pred hcCCCHHHHHHHHHHHHHHHH-hCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHh
Confidence 667788999999999998775 444 34444566666655666899999999999999988776432 24
Q ss_pred hhHHHHHHhhcCCCchHHHhHHhHHHhh--ccCCCh-H-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC--chh
Q 039154 125 WFIPLVKRLAAGEWFTARVSACGLFHIA--YPSAPD-I-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE--PAH 198 (211)
Q Consensus 125 ~l~p~i~~l~~d~~~~vR~~~a~~l~~l--~~~~~~-~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~--~~~ 198 (211)
.+...+.+...+.+..+|..+++.+.++ ...+.. + ....|+-.|++=-..+...+|+....-++.++..-. ++.
T Consensus 114 ~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~ 193 (298)
T PF12719_consen 114 SLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQER 193 (298)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5777788887888888999999999996 455555 4 566777777777777778999999988888887544 466
Q ss_pred hHHHHHHHHHhh
Q 039154 199 LKTDIMSIFEDL 210 (211)
Q Consensus 199 ~~~~llp~~~~L 210 (211)
+..-++|.+..+
T Consensus 194 l~~~f~~~l~~~ 205 (298)
T PF12719_consen 194 LAEAFLPTLRTL 205 (298)
T ss_pred HHHHHHHHHHHH
Confidence 667777877654
No 86
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.40 E-value=0.0055 Score=49.95 Aligned_cols=187 Identities=10% Similarity=0.032 Sum_probs=130.5
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc-ccccc
Q 039154 11 IAVLTDELK-NDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG-VEHAH 85 (211)
Q Consensus 11 l~~l~~~l~-s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~-~~~~~ 85 (211)
++.++..|+ ++||..+..+.-.++..|..-.... ..-..++.+.. +.++++.||..+..++.+++..... .....
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 788888888 5678888888888877653211111 12244588888 8999999999999999988775432 23344
Q ss_pred ccchHHhhhccch-hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC--hH-HH
Q 039154 86 VLLPPLETLCTVE-ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP--DI-LK 161 (211)
Q Consensus 86 ~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~--~~-~~ 161 (211)
++-..+.....+. +..++.++.+.|..+.-.-.....-...+|.+..+....+-.+|..+.+.+..++..-. .+ ..
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~ 173 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLS 173 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 5555566555554 67899999999998864443333333356667778777888889999999888866533 22 34
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhhHHHHhhhCch
Q 039154 162 TELRSIYTQLCQDD-MPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 162 ~~l~~~~~~L~~D~-~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
.+....|+.|.+.+ ..++-..+..-+.++.+.+.++
T Consensus 174 ~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 174 AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 45667788888876 4777888888888887777654
No 87
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.39 E-value=0.0087 Score=53.72 Aligned_cols=121 Identities=15% Similarity=0.230 Sum_probs=65.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
.++.+++..+++|..+|..|++.|+.+++.-+ .....+.-.+.+ ++-+++..+.++-++|-.+.. . +....|-
T Consensus 60 Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~-~---d~k~tL~ 133 (556)
T PF05918_consen 60 AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLK-Q---DPKGTLT 133 (556)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHH-H----HHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-c---CcHHHHH
Confidence 37888888999999999999999988876532 333455666667 666666655666666655544 1 2222344
Q ss_pred hHHhhhc--cchhhHHHHHHHHHHHHHHhhcCh------hHHHHhhHHHHHHhhcC
Q 039154 89 PPLETLC--TVEETCMRDKAVESLCRIGSQMRE------SDLVDWFIPLVKRLAAG 136 (211)
Q Consensus 89 p~l~~l~--~d~~~~VR~~a~~~l~~l~~~l~~------~~~~~~l~p~i~~l~~d 136 (211)
.++..+. ..+++.||+.+++=+..=...++. ++.++++...+++..+|
T Consensus 134 ~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 134 GLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 4444444 133456788777666444333322 34445555555555444
No 88
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0011 Score=60.35 Aligned_cols=135 Identities=19% Similarity=0.122 Sum_probs=96.2
Q ss_pred hchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh
Q 039154 47 KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW 125 (211)
Q Consensus 47 ~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~ 125 (211)
++--|++.+ +.|.+|..|..-.-.+.- .++|.. ....|-.+|.--.+|.++.||.+|+-+++=++-.-+ +.
T Consensus 518 e~Ad~lI~el~~dkdpilR~~Gm~t~al--Ay~GTg-nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp-----~~ 589 (929)
T KOG2062|consen 518 EDADPLIKELLRDKDPILRYGGMYTLAL--AYVGTG-NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP-----EQ 589 (929)
T ss_pred hhhHHHHHHHhcCCchhhhhhhHHHHHH--HHhccC-chhhHHHhhcccccccchHHHHHHHHHheeeEecCh-----hh
Confidence 355588888 889999999876554432 123321 122333444455689999999999999887665522 33
Q ss_pred hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
+...+.-|+++=+..||+.+|-.++-.|..-|.. .-+.++..|.+|+.--||+.|.-++.-+.-
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 4444555677778899999999999999998876 556667778889999999999887765543
No 89
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.28 E-value=0.0026 Score=59.50 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=117.4
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhh
Q 039154 18 LKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL 94 (211)
Q Consensus 18 l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l 94 (211)
++|-|..+=..+++.|..||+.+++. ......+|.+.. +.+.-..+|-++...+..+++ ......+.+.+..+
T Consensus 304 ~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n----s~~l~~~~~~I~e~ 379 (815)
T KOG1820|consen 304 LKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN----STPLSKMSEAILEA 379 (815)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh----cccHHHHHHHHHHH
Confidence 56778888889999999999999986 344556677777 888999999999998888776 33455677888899
Q ss_pred ccchhhHHHHHHHHHHHHHHhhcCh----hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154 95 CTVEETCMRDKAVESLCRIGSQMRE----SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (211)
Q Consensus 95 ~~d~~~~VR~~a~~~l~~l~~~l~~----~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~ 159 (211)
+++.++.+|..+..-+.......++ ....+.+.|.+....+|..-.||.++.+.+..+....|.+
T Consensus 380 lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 380 LKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred hcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999988888888773 4556789999999999999999999999999999999987
No 90
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0029 Score=52.25 Aligned_cols=170 Identities=15% Similarity=0.156 Sum_probs=123.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc--c
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH--A 84 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~--~ 84 (211)
.|...+..|.|+|=......+..+..++..=... ..-.+++..+.+ +......|-++++..++++...++.... .
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777788899999888888888887665433211 112234445555 8888888999999999999987764221 1
Q ss_pred cccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----
Q 039154 85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----- 159 (211)
Q Consensus 85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----- 159 (211)
..++..|-.=..+++..||+.|-++|..+.....+..+...++|.. ...+.++|..++.+++.....+|-.
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~----~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~ 244 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPIL----QHSNPRVRAKAALCFSRCVIRLGVLPVLLQ 244 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHH----hhhchhhhhhhhccccccceeccccchhhH
Confidence 2222333333456678999999999999999999988888888874 4456789999999999988887633
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHH
Q 039154 160 LKTELRSIYTQLCQDDMPMVRRSA 183 (211)
Q Consensus 160 ~~~~l~~~~~~L~~D~~~~VR~aa 183 (211)
+-.++.+...+-+.|+-|.+|.++
T Consensus 245 ~~~dl~~a~~~~~~d~Lp~~~~~a 268 (334)
T KOG2933|consen 245 GSCDLSRAAQEQGSDKLPELREAA 268 (334)
T ss_pred hHHHHHHHHHhhhcccccccccch
Confidence 345778888888889998888544
No 91
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0014 Score=59.79 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=83.5
Q ss_pred CCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchh-hhhhhcCCChHHHHHHHHHHHhccccccCccccc
Q 039154 6 EPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELI-PFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHA 84 (211)
Q Consensus 6 ~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~-p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~ 84 (211)
..+..++.+...-+++|+..|..|++.++.+ +-+...+.+. |+.....|+++.||++++-....+-..=..-...
T Consensus 83 ~a~~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~ 158 (734)
T KOG1061|consen 83 LAILAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED 158 (734)
T ss_pred HHHhhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc
Confidence 3445578888999999999999998887643 3444444444 4444489999999999988887765522223345
Q ss_pred cccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh
Q 039154 85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE 119 (211)
Q Consensus 85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~ 119 (211)
.-+++.|..+..|+++.|=..|+.+|..+.+.-..
T Consensus 159 ~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 159 SGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 67888999999999999999999999999887653
No 92
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.0034 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhh
Q 039154 164 LRSIYTQLCQDDMPMVRRSAASNL 187 (211)
Q Consensus 164 l~~~~~~L~~D~~~~VR~aaa~~l 187 (211)
-++.+.+.++|+++.||..|..+|
T Consensus 252 ~~~vL~e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 252 CVEVLKEYLGDEERVVRESCEVAL 275 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 444455555555555555555444
No 93
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.011 Score=51.67 Aligned_cols=184 Identities=18% Similarity=0.161 Sum_probs=121.0
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhCCcchh--hchhhh---hhh-cCCChHHHHHHHHHHHhccccccCc--cccccccc
Q 039154 17 ELKNDDIQLRLNSIRRLSTIARALGEERTP--KELIPF---LSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLL 88 (211)
Q Consensus 17 ~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~--~~L~p~---l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~ll 88 (211)
.+.|.-++.|+.-+.-+ |...++.... ..+-.. +.+ ..|.+.-+|..++..|++.+..... ..+.+.++
T Consensus 225 s~ts~~~~~ritd~Af~---ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~l 301 (533)
T KOG2032|consen 225 SITSEKENGRITDIAFF---AELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQL 301 (533)
T ss_pred ccchhcccchHHHHHHH---HHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHH
Confidence 34444455565544444 4455554322 112222 223 7899999999999999999884221 12333444
Q ss_pred -hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHH---hhcCCCchHHHhHHhHHHhhccCCChH----H
Q 039154 89 -PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKR---LAAGEWFTARVSACGLFHIAYPSAPDI----L 160 (211)
Q Consensus 89 -p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~---l~~d~~~~vR~~~a~~l~~l~~~~~~~----~ 160 (211)
-++-.|..+.+..|...+++.|..+.++....++..+++|.-.+ +..|..-..|.++..+|+.+....|.. +
T Consensus 302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~F 381 (533)
T KOG2032|consen 302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFF 381 (533)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhh
Confidence 34566777778999999999999999999999998888887654 566778889999999999998887765 2
Q ss_pred HHHHH---HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154 161 KTELR---SIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF 207 (211)
Q Consensus 161 ~~~l~---~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~ 207 (211)
.+... ..|.--++|+.|-|=+||-..+ ..++|.....++..+|
T Consensus 382 te~v~k~~~~lllhl~d~~p~va~ACr~~~----~~c~p~l~rke~~~~~ 427 (533)
T KOG2032|consen 382 TEQVKKRLAPLLLHLQDPNPYVARACRSEL----RTCYPNLVRKELYHLF 427 (533)
T ss_pred HHHHHhccccceeeeCCCChHHHHHHHHHH----HhcCchhHHHHHHHHH
Confidence 32333 2234457899998877665444 3444444444444333
No 94
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0059 Score=55.80 Aligned_cols=152 Identities=18% Similarity=0.153 Sum_probs=100.6
Q ss_pred HHHH-hcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchH
Q 039154 14 LTDE-LKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (211)
Q Consensus 14 l~~~-l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~ 90 (211)
+|++ +.+.||.-|-.-+-.+ --.-.|..+ ....|+++- ..|.+++||+++...||-+.- .. ...+|-
T Consensus 523 lI~el~~dkdpilR~~Gm~t~--alAy~GTgnnkair~lLh~a--VsD~nDDVrRaAVialGFVl~--~d----p~~~~s 592 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTL--ALAYVGTGNNKAIRRLLHVA--VSDVNDDVRRAAVIALGFVLF--RD----PEQLPS 592 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHH--HHHHhccCchhhHHHhhccc--ccccchHHHHHHHHHheeeEe--cC----hhhchH
Confidence 4444 5677888885443333 223445543 333333332 569999999999999998653 12 223444
Q ss_pred Hhh-hccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHH
Q 039154 91 LET-LCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRS 166 (211)
Q Consensus 91 l~~-l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~ 166 (211)
..+ |.+.-++.||..++-+|+-.|.--|.....+.+-| |.+|+.--||..++-.+.-+--+..++ ....+..
T Consensus 593 ~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLep----l~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk 668 (929)
T KOG2062|consen 593 TVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEP----LTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRK 668 (929)
T ss_pred HHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhh----hhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 444 44555899999999999999988777766555555 556988889999876666554333333 3567888
Q ss_pred HHHHhcCCCCHHH
Q 039154 167 IYTQLCQDDMPMV 179 (211)
Q Consensus 167 ~~~~L~~D~~~~V 179 (211)
.|.+...|....+
T Consensus 669 ~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 669 QLEKVINDKHEDG 681 (929)
T ss_pred HHHHHhhhhhhHH
Confidence 8888888877554
No 95
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.035 Score=49.49 Aligned_cols=183 Identities=14% Similarity=0.112 Sum_probs=131.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--c-hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc--
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--R-TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA-- 84 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~-~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~-- 84 (211)
++++..-|.++..++|.-+=.-++++-..+.+. . -..+.++.+.. ++..+++.+..+..++..|++.-| .+..
T Consensus 210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~ 288 (675)
T KOG0212|consen 210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLY 288 (675)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhh
Confidence 788889998999999976655454444444332 2 34677888888 999999999999999999999544 3332
Q ss_pred -cccchHHhhhccchh-hHHHHHHHHHHHHHHhhcChhHHH-----HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154 85 -HVLLPPLETLCTVEE-TCMRDKAVESLCRIGSQMRESDLV-----DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (211)
Q Consensus 85 -~~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l~~~~~~-----~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~ 157 (211)
+.++..+-..+.|.+ .++++.+...=..+...++.+... ..++..+.+...++....|.++.+-+..++...+
T Consensus 289 ~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p 368 (675)
T KOG0212|consen 289 LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP 368 (675)
T ss_pred hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc
Confidence 223333333445554 478888776554555544443322 3567777888889999999999999999999998
Q ss_pred hH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 158 DI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 158 ~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
.+ ..+.+++.+++-+.|++-+|---+..-+..+++.-
T Consensus 369 ~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 369 GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 88 45778888888889999998887777777776643
No 96
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.17 E-value=0.0018 Score=52.41 Aligned_cols=79 Identities=20% Similarity=0.157 Sum_probs=43.7
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch--hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE--ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL 133 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l 133 (211)
+.+++...|..+|-.||++.. +. =+|.+.+-+.|+ ++-||..|+++|+.++.- ..++.+++.
T Consensus 196 l~~~SalfrhEvAfVfGQl~s----~~----ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--------~~~~vL~e~ 259 (289)
T KOG0567|consen 196 LADDSALFRHEVAFVFGQLQS----PA----AIPSLIKVLLDETEHPMVRHEAAEALGAIADE--------DCVEVLKEY 259 (289)
T ss_pred cccchHHHHHHHHHHHhhccc----hh----hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--------HHHHHHHHH
Confidence 555566666666666666432 11 123333333333 345666666666666663 455556666
Q ss_pred hcCCCchHHHhHHhHHH
Q 039154 134 AAGEWFTARVSACGLFH 150 (211)
Q Consensus 134 ~~d~~~~vR~~~a~~l~ 150 (211)
++|+.--||.+|...+.
T Consensus 260 ~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 260 LGDEERVVRESCEVALD 276 (289)
T ss_pred cCCcHHHHHHHHHHHHH
Confidence 66666666666655554
No 97
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.031 Score=53.61 Aligned_cols=188 Identities=15% Similarity=0.124 Sum_probs=128.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh-cCCChHHHHHHHHHHHhcccc--c---cCc---c
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIP--Y---VGG---V 81 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~--~---ig~---~ 81 (211)
.+.+.+++-....|..+++-+..|-..++.+- ....++|-+.= ..+.+..-|+.+-+.|..++. . .|. +
T Consensus 701 ~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~ 780 (1176)
T KOG1248|consen 701 SLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPAS 780 (1176)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchH
Confidence 44455556566667777777777777777432 23333444333 567777788888777776662 1 121 2
Q ss_pred ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhc---ChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154 82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQM---RESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (211)
Q Consensus 82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l---~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~ 158 (211)
...+..++.+...+-.++..++...+-++..+...+ ..+..-..++..+..+....+-.+|.+|...+..++..++.
T Consensus 781 ~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 781 AILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 233444455444444444555544344444444443 23455566778888888889999999999999888888888
Q ss_pred H----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhH
Q 039154 159 I----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLK 200 (211)
Q Consensus 159 ~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~ 200 (211)
. ..+.|+|..+.|.+|....||..+-.-|..++..+|.+.++
T Consensus 861 ~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 861 ECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 7 56789999999999999999999999999999999998754
No 98
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.10 E-value=0.0055 Score=55.64 Aligned_cols=164 Identities=20% Similarity=0.197 Sum_probs=91.1
Q ss_pred HHHHHHHhcCC----CHHHHHHHHHHHHHHHHHhCCcch------hhchhhhhhh-c----CCChHHHHHHHHHHHhccc
Q 039154 11 IAVLTDELKND----DIQLRLNSIRRLSTIARALGEERT------PKELIPFLSA-N----NDDDDEVLLAMAEELGVFI 75 (211)
Q Consensus 11 l~~l~~~l~s~----~~~~R~~a~~~l~~ia~~lg~~~~------~~~L~p~l~~-~----~D~~~~VR~~~a~~L~~l~ 75 (211)
++.+.+.++++ .+..|..|+-.++.+++....+.. .++++|++.+ + .+.+.+.+....++||++
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~- 473 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA- 473 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc-
Confidence 55555555554 344566666666666664433221 2456666554 2 233445566677777763
Q ss_pred cccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154 76 PYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 76 ~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
|-......+.|.+. --......+|..|+.+|..++... ++.+.+.++|.+..-. ....+|.+|...+...-+.
T Consensus 474 ---g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~-p~~v~~~l~~i~~n~~--e~~EvRiaA~~~lm~t~P~ 546 (574)
T smart00638 474 ---GHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRD-PRKVQEVLLPIYLNRA--EPPEVRMAAVLVLMETKPS 546 (574)
T ss_pred ---CChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHcCCC--CChHHHHHHHHHHHhcCCC
Confidence 33443334444433 111224567888888888776543 3445666666664433 3344777777766554333
Q ss_pred CChHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 039154 156 APDILKTELRSIYTQLCQDDMPMVRRSAASNL 187 (211)
Q Consensus 156 ~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l 187 (211)
...|..+...+-.|++..|+..+.+.|
T Consensus 547 -----~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 547 -----VALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred -----HHHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence 235555556666677777777666554
No 99
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.014 Score=53.42 Aligned_cols=179 Identities=16% Similarity=0.184 Sum_probs=132.9
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccc
Q 039154 8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (211)
Q Consensus 8 ~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ 86 (211)
...+..+..++.|.-+..|..|++.+-. +-.+| ..-..|.|-+.+ .+-.+-+.++-+=..+.+.++ +.++-.-.
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa-~Mt~G--~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~--~~P~~a~~ 86 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIA-YMTVG--KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAK--GKPDLAIL 86 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHh-cCccC--cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhc--cCchHHHh
Confidence 3456777888888878889888877621 23566 344678888888 555567788877777777665 23333334
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHH
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELR 165 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~ 165 (211)
-.+.+..=++|+++.+|.-|+..+..+ +.+.+.+++..-+.+..+|...-||+.++.+..+++..-... ...-+.
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~ 162 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLV 162 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchh
Confidence 456677777899999999999877543 445666777777777889999899999999988887665444 356788
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 166 SIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
+.+..++.|++|.|=..|..++.++...-.
T Consensus 163 ~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 163 DALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 888999999999999999999999988653
No 100
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.07 E-value=0.04 Score=49.59 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=92.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp 89 (211)
-..+++.-|. +...+.-|.+-++...+..+ ...++-+..+.. |.|++..||+.+...|+.+++. .++....+..
T Consensus 25 y~~il~~~kg-~~k~K~Laaq~I~kffk~FP--~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~--~~~~v~kvaD 99 (556)
T PF05918_consen 25 YKEILDGVKG-SPKEKRLAAQFIPKFFKHFP--DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD--NPEHVSKVAD 99 (556)
T ss_dssp HHHHHHGGGS--HHHHHHHHHHHHHHHCC-G--GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHH
T ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh--HHHHHhHHHH
Confidence 4556677766 46666668888888776665 345666777777 9999999999999999999983 3566778889
Q ss_pred HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHh----HHHhhcc-CCC--hHHHH
Q 039154 90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACG----LFHIAYP-SAP--DILKT 162 (211)
Q Consensus 90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~----~l~~l~~-~~~--~~~~~ 162 (211)
+|.+|+.-++...+...=++|..+...-+...+...+-.....-.+|+ .+|.-+.. -+..+-. .+. ++..+
T Consensus 100 vL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de--~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~ 177 (556)
T PF05918_consen 100 VLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDE--QVRERALKFLREKLKPLKPELLTPQKEMEE 177 (556)
T ss_dssp HHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-H--HHHHHHHHHHHHHGGGS-TTTS---HHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCch--HHHHHHHHHHHHHHhhCcHHHhhchHHHHH
Confidence 999999988888888888888888776444333222211111112343 34443332 2222222 222 33556
Q ss_pred HHHHHHHHhcCC
Q 039154 163 ELRSIYTQLCQD 174 (211)
Q Consensus 163 ~l~~~~~~L~~D 174 (211)
.+.....+.++|
T Consensus 178 ~i~~~ikkvL~D 189 (556)
T PF05918_consen 178 FIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHHHh
Confidence 677777777777
No 101
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.03 E-value=0.014 Score=47.58 Aligned_cols=135 Identities=10% Similarity=0.068 Sum_probs=87.0
Q ss_pred CChHHHHHHHHHHHhccccccCcccc--ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhc
Q 039154 58 DDDDEVLLAMAEELGVFIPYVGGVEH--AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAA 135 (211)
Q Consensus 58 D~~~~VR~~~a~~L~~l~~~ig~~~~--~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~ 135 (211)
.++|.++..+.-.+++.+.+-...+. ..-.++++..++.++++.||..|+.++..++..-.....-+..++.+.+...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 46788999998999987764322222 2235789999999999999999999999997776544333444555555433
Q ss_pred CCCc--hHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 136 GEWF--TARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 136 d~~~--~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
+..| .+..+....+..+.-.-... ....-+|.|+.|+...+..+|.-+.+.|..++.
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 3333 45556667776664332222 223345566666666666666666666665554
No 102
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.024 Score=47.59 Aligned_cols=202 Identities=17% Similarity=0.188 Sum_probs=126.1
Q ss_pred CcchHHHHHHHhcCC-------CHHHHHH---HHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccc
Q 039154 7 PLYPIAVLTDELKND-------DIQLRLN---SIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFI 75 (211)
Q Consensus 7 ~~~pl~~l~~~l~s~-------~~~~R~~---a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~ 75 (211)
.++||......|+-+ |.++|.. ++.-|..+-+...+-.....+.|-+.. +..++..|+.-++++++.+.
T Consensus 31 dlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcil 110 (524)
T KOG4413|consen 31 DLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCIL 110 (524)
T ss_pred ccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHH
Confidence 456777777777654 3344544 445555555555554555667788888 88999999999999999998
Q ss_pred cccCcccc-------ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh-hHH--HHhhHHH-HHHhhcCCCchHHHh
Q 039154 76 PYVGGVEH-------AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE-SDL--VDWFIPL-VKRLAAGEWFTARVS 144 (211)
Q Consensus 76 ~~ig~~~~-------~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~-~~~--~~~l~p~-i~~l~~d~~~~vR~~ 144 (211)
+....... -..|+|.+...+..++++|-.+|++++..++-.-.. +.+ ++.+-|. ...++.-.+--+|+-
T Consensus 111 EdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvR 190 (524)
T KOG4413|consen 111 EDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVR 190 (524)
T ss_pred hcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHH
Confidence 86553332 234678888888999999999999999998754211 111 0111111 122322223234555
Q ss_pred HHhHHHhhccCCChH----HHHHHHHHHHHhcCC-CCHHHHHHHHHhhHHHHhhh-CchhhHH-HHHHHHH
Q 039154 145 ACGLFHIAYPSAPDI----LKTELRSIYTQLCQD-DMPMVRRSAASNLRKFAATV-EPAHLKT-DIMSIFE 208 (211)
Q Consensus 145 ~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D-~~~~VR~aaa~~l~~~~~~~-~~~~~~~-~llp~~~ 208 (211)
+-+++.+++..-... .+.-|+..+..=++- ++-.||..|..-...++..- |.+.+.+ .++..++
T Consensus 191 VleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlic 261 (524)
T KOG4413|consen 191 VLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLIC 261 (524)
T ss_pred HHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHH
Confidence 566666665543332 345677776665555 77899999998888887764 3443322 2444443
No 103
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.99 E-value=0.0059 Score=55.89 Aligned_cols=161 Identities=18% Similarity=0.247 Sum_probs=102.4
Q ss_pred HHHHHHHhcCC----CHHHHHHHHHHHHHHHHHhCCc------------chhhchhhhhhh-cC----CChHHHHHHHHH
Q 039154 11 IAVLTDELKND----DIQLRLNSIRRLSTIARALGEE------------RTPKELIPFLSA-NN----DDDDEVLLAMAE 69 (211)
Q Consensus 11 l~~l~~~l~s~----~~~~R~~a~~~l~~ia~~lg~~------------~~~~~L~p~l~~-~~----D~~~~VR~~~a~ 69 (211)
|+.+.+.++++ ++..|..|+-.++.++...-.. ...+++++.+.+ +. ..+.+.+..+.+
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 44454555543 4567778888887777544333 355566666665 33 456678888999
Q ss_pred HHhccccccCccccccccchHHhhhccch---hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHH
Q 039154 70 ELGVFIPYVGGVEHAHVLLPPLETLCTVE---ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSAC 146 (211)
Q Consensus 70 ~L~~l~~~ig~~~~~~~llp~l~~l~~d~---~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a 146 (211)
+||++ |-+ ..+|.+..++.+. ...+|.+|+.+|.++... .++.+.+.++|++..-.++. .+|.+|.
T Consensus 513 aLgN~----g~~----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-~~~~v~~~l~~I~~n~~e~~--EvRiaA~ 581 (618)
T PF01347_consen 513 ALGNL----GHP----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-CPEKVREILLPIFMNTTEDP--EVRIAAY 581 (618)
T ss_dssp HHHHH----T-G----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-TTS-H--HHHHHHH
T ss_pred Hhhcc----CCc----hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-CcHHHHHHHHHHhcCCCCCh--hHHHHHH
Confidence 99985 333 3455555555655 678999999999988444 46677888888887665543 4999998
Q ss_pred hHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhh
Q 039154 147 GLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187 (211)
Q Consensus 147 ~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l 187 (211)
..+...-+. ...|..+...+-.|++..|+..+...|
T Consensus 582 ~~lm~~~P~-----~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 582 LILMRCNPS-----PSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHT--------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHhcCCC-----HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 777654232 346667777778899999999888766
No 104
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.97 E-value=0.0066 Score=56.65 Aligned_cols=149 Identities=13% Similarity=0.183 Sum_probs=111.4
Q ss_pred chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc---ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh
Q 039154 44 RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV---EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE 119 (211)
Q Consensus 44 ~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~---~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~ 119 (211)
+.=..+.|.+.+ ..-..-.+|..--..|..+...+..+ .....|+|+|-+-++-++..||.++...+..+....++
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 444566788877 44333334444444444443333211 13467899999999999999999999998887766655
Q ss_pred --hHHHHhhHHHHHHhhcCCC---chHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 120 --SDLVDWFIPLVKRLAAGEW---FTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 120 --~~~~~~l~p~i~~l~~d~~---~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
.+.-.+++|.+..+..|.. -.||..+..+++.+.+..+.. ++++.+..+.+-+.|+-..||+.|+..=++.
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 2335789999999999877 579999999999999877765 7899999999999999999999999876665
Q ss_pred Hh
Q 039154 191 AA 192 (211)
Q Consensus 191 ~~ 192 (211)
..
T Consensus 1023 ~~ 1024 (1030)
T KOG1967|consen 1023 YM 1024 (1030)
T ss_pred hh
Confidence 43
No 105
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.97 E-value=0.051 Score=45.90 Aligned_cols=177 Identities=18% Similarity=0.189 Sum_probs=118.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-------hhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccCc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-------TPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGG 80 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-------~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~ 80 (211)
.+..+...|-|+|.+....+.-.+..+ |..|. ...-.+|-|.+ + ..+..+....+|=.|.+++. |.
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~---LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaS--Gt 146 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKL---LSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIAS--GT 146 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHH---hccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhcc--Cc
Confidence 456778889999999888777666544 44432 23345688888 5 55667788889999999886 32
Q ss_pred cccccc-----cchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--hHH-H-HhhHHHHHHhhcCCC-chHHHhHHhHHH
Q 039154 81 VEHAHV-----LLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--SDL-V-DWFIPLVKRLAAGEW-FTARVSACGLFH 150 (211)
Q Consensus 81 ~~~~~~-----llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~~~-~-~~l~p~i~~l~~d~~-~~vR~~~a~~l~ 150 (211)
...... -.|.|.+++.+.+..||+.++.+|+.++..-+. +.+ . ..+-|.+.-+-++.. ...-..+.-.+.
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS 226 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS 226 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence 222222 369999999999999999999999999876433 111 1 123344433333322 122234455667
Q ss_pred hhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154 151 IAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 151 ~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
.+|..-.++ .....+|++.+|..-.+++|---|+=++.=++
T Consensus 227 NlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 227 NLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 777765554 45788999999999999998887776664443
No 106
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.94 E-value=0.023 Score=49.65 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=116.9
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC--------
Q 039154 12 AVLTDEL-KNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG-------- 79 (211)
Q Consensus 12 ~~l~~~l-~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig-------- 79 (211)
+.+.+.+ .+.+...|..++..+..|++.+=-. ....+++..+.+ +.| +++...+|+.++.+..-..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~ 309 (415)
T PF12460_consen 232 DSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENH 309 (415)
T ss_pred HHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCcccc
Confidence 3333334 4667888889999999988865322 233455666666 444 8899999999988776421
Q ss_pred -------ccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCCCchHHHhHHhHH
Q 039154 80 -------GVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGEWFTARVSACGLF 149 (211)
Q Consensus 80 -------~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~~~~vR~~~a~~l 149 (211)
...+...++|.+.+..+..+..+|.....+|..+.+..+.+.+. ..++|++.+-..-++..+|.++...+
T Consensus 310 a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL 389 (415)
T PF12460_consen 310 ANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETL 389 (415)
T ss_pred chhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 13344567888888888777779999999999999999998765 45899998888888889999999999
Q ss_pred HhhccCCChH---HHHHHHHHHHHhc
Q 039154 150 HIAYPSAPDI---LKTELRSIYTQLC 172 (211)
Q Consensus 150 ~~l~~~~~~~---~~~~l~~~~~~L~ 172 (211)
..+...-++- +...++|.+++++
T Consensus 390 ~~~l~~~~~~i~~hl~sLI~~LL~ls 415 (415)
T PF12460_consen 390 KMILEEAPELISEHLSSLIPRLLKLS 415 (415)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhcC
Confidence 8887766443 4567777777653
No 107
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.019 Score=54.91 Aligned_cols=155 Identities=16% Similarity=0.108 Sum_probs=114.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH-----HHhCCcc---hhhchhhhhhh-cCCChHHHHHH----HHHHHhccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIA-----RALGEER---TPKELIPFLSA-NNDDDDEVLLA----MAEELGVFIPY 77 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia-----~~lg~~~---~~~~L~p~l~~-~~D~~~~VR~~----~a~~L~~l~~~ 77 (211)
|...+-.+|..|...|.++-+-|..|+ ...|.+. ..++.++.+.. ..-+...++.. +...+-++..
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~- 818 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN- 818 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc-
Confidence 555556678889999999988887777 3445444 44555666666 44444444443 2222333333
Q ss_pred cCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh---hHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154 78 VGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW---FIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (211)
Q Consensus 78 ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~---l~p~i~~l~~d~~~~vR~~~a~~l~~l~~ 154 (211)
+++......++..+.-++..+...||.+|+.-+..++..++..-+..+ ++|.+.+|.+|-.-.+|..+=.+|-.++.
T Consensus 819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 334556777888888899999999999999999999999999877654 79999999999999999999999999999
Q ss_pred CCChHHHHHHHH
Q 039154 155 SAPDILKTELRS 166 (211)
Q Consensus 155 ~~~~~~~~~l~~ 166 (211)
.+|.+....++|
T Consensus 899 kfg~~eLe~~~p 910 (1176)
T KOG1248|consen 899 KFGAEELESFLP 910 (1176)
T ss_pred HhCHHHHHhhCH
Confidence 999874444444
No 108
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=0.068 Score=48.98 Aligned_cols=168 Identities=17% Similarity=0.179 Sum_probs=99.7
Q ss_pred CCCCcch--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh--cCCChHHHHHHHHHHHhccccccC
Q 039154 4 VDEPLYP--IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPYVG 79 (211)
Q Consensus 4 ~~~~~~p--l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~ig 79 (211)
.||+++- +..+..-+++-.|.+|+.|+..|....-. +.+-.-.+...+.. -+|+++|||+++..++..
T Consensus 119 idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d--~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~v------ 190 (892)
T KOG2025|consen 119 IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD--PKDEECPVVNLLKDLIQNDPSDEVRRAALSNISV------ 190 (892)
T ss_pred cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhcc------
Confidence 4555554 56677778899999999999988876421 11223344555555 369999999999776654
Q ss_pred ccccccccchHHhhhccchhhHHHHHHHH-HHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154 80 GVEHAHVLLPPLETLCTVEETCMRDKAVE-SLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (211)
Q Consensus 80 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~-~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~ 158 (211)
...-+|.+.+-+.|-+..+|.-+.. .++++ .+....+. .-.-++.+-.+|..+.||.++...+..=--.+.
T Consensus 191 ----dnsTlp~IveRarDV~~anRrlvY~r~lpki--d~r~lsi~-krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~- 262 (892)
T KOG2025|consen 191 ----DNSTLPCIVERARDVSGANRRLVYERCLPKI--DLRSLSID-KRVLLLEWGLNDREFSVKGALVDAILSGWLRFS- 262 (892)
T ss_pred ----CcccchhHHHHhhhhhHHHHHHHHHHhhhhh--hhhhhhHH-HHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-
Confidence 2245677888889998888887764 44445 22222222 223345556678888888887766533111110
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLRK 189 (211)
Q Consensus 159 ~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~ 189 (211)
...+...+.+|=-....+|+..+..+|=.
T Consensus 263 --dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 263 --DGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred --cccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 11344444444444444555555544433
No 109
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.73 E-value=0.01 Score=53.84 Aligned_cols=171 Identities=16% Similarity=0.110 Sum_probs=106.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--CCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc-----
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARAL--GEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE----- 82 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~l--g~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~----- 82 (211)
+..+++.+++...... .+.+.+..+...+ +....-+.+.+++.. -....+.+|.++.-+++.++.......
T Consensus 359 ~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~ 437 (574)
T smart00638 359 LKFIKQWIKNKKITPL-EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD 437 (574)
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh
Confidence 7788888888775432 2333343433333 233445555566554 344577899999999998887332111
Q ss_pred -cccccchHHhhhcc----chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154 83 -HAHVLLPPLETLCT----VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (211)
Q Consensus 83 -~~~~llp~l~~l~~----d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~ 157 (211)
..+.+.|.+...+. ..+...+..++++|++++..- ....+.|++. -..+.+-.+|..+...|..++...+
T Consensus 438 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~----~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p 512 (574)
T smart00638 438 FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS----SIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDP 512 (574)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh----HHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCc
Confidence 11345555544333 334455677788888766642 3344555554 1123445799999999998877777
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154 158 DILKTELRSIYTQLCQDDMPMVRRSAASNLRK 189 (211)
Q Consensus 158 ~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~ 189 (211)
...++.++++|.+ .++.++||.+|+..+-.
T Consensus 513 ~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 513 RKVQEVLLPIYLN--RAEPPEVRMAAVLVLME 542 (574)
T ss_pred hHHHHHHHHHHcC--CCCChHHHHHHHHHHHh
Confidence 7777888888844 45668899999877643
No 110
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.68 E-value=0.012 Score=53.94 Aligned_cols=168 Identities=17% Similarity=0.145 Sum_probs=98.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CC-cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc-------
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARAL-GE-ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG------- 80 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~l-g~-~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~------- 80 (211)
+..+++.+++.....-. +.+.+..++... -| +..-+.+.+++.. -...++.+|.++.-+++.++...-.
T Consensus 397 v~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~ 475 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEF 475 (618)
T ss_dssp HHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccc
Confidence 66777777775543332 444444444333 22 2233344444443 3345678999999898887764321
Q ss_pred -----cccccccchHHhhhcc----chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCC---CchHHHhHHhH
Q 039154 81 -----VEHAHVLLPPLETLCT----VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGE---WFTARVSACGL 148 (211)
Q Consensus 81 -----~~~~~~llp~l~~l~~----d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~---~~~vR~~~a~~ 148 (211)
....+.+.+.+...+. ..+..-+..++++|++++.. ..+|.+...+.+. .-.+|..|...
T Consensus 476 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--------~~i~~l~~~i~~~~~~~~~~R~~Ai~A 547 (618)
T PF01347_consen 476 CDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--------ESIPVLLPYIEGKEEVPHFIRVAAIQA 547 (618)
T ss_dssp -----SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--------GGHHHHHTTSTTSS-S-HHHHHHHHHT
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--------hhhHHHHhHhhhccccchHHHHHHHHH
Confidence 1334445555554444 33457788889999988753 4556666666665 56899999999
Q ss_pred HHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154 149 FHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRK 189 (211)
Q Consensus 149 l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~ 189 (211)
|..+........++.++++|.+--. .++||.+|+..|-.
T Consensus 548 lr~~~~~~~~~v~~~l~~I~~n~~e--~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 548 LRRLAKHCPEKVREILLPIFMNTTE--DPEVRIAAYLILMR 586 (618)
T ss_dssp TTTGGGT-HHHHHHHHHHHHH-TTS---HHHHHHHHHHHHH
T ss_pred HHHHhhcCcHHHHHHHHHHhcCCCC--ChhHHHHHHHHHHh
Confidence 9988666655567777777776443 46799999876643
No 111
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.65 E-value=0.011 Score=55.54 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=102.8
Q ss_pred hhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--------
Q 039154 49 LIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE-------- 119 (211)
Q Consensus 49 L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~-------- 119 (211)
+-.++.. |.|.-+-||..+...+..+.+.-|+.. ...|+-...+-..|+..++|+++...+..=...++.
T Consensus 473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~-~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l 551 (1529)
T KOG0413|consen 473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHRE-AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLL 551 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhc
Confidence 3455666 999999999999999998888666543 335555555566677788888776655443222211
Q ss_pred -------------------hHHHHhhHHHHH-HhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHH
Q 039154 120 -------------------SDLVDWFIPLVK-RLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPM 178 (211)
Q Consensus 120 -------------------~~~~~~l~p~i~-~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~ 178 (211)
..+++.++-+|. ++..|+--.||.+++.++...-.....+ ..+..+-++..||+|+...
T Consensus 552 ~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vs 631 (1529)
T KOG0413|consen 552 LDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVS 631 (1529)
T ss_pred CcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchH
Confidence 112344555554 4555888999999999998887777666 3455588899999999999
Q ss_pred HHHHHHHhhHHHHh
Q 039154 179 VRRSAASNLRKFAA 192 (211)
Q Consensus 179 VR~aaa~~l~~~~~ 192 (211)
||+.++.+|+++--
T Consensus 632 vrk~~~~Sltel~~ 645 (1529)
T KOG0413|consen 632 VRKTGADSLTELML 645 (1529)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998753
No 112
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0084 Score=53.56 Aligned_cols=136 Identities=21% Similarity=0.192 Sum_probs=93.4
Q ss_pred hhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHH
Q 039154 51 PFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPL 129 (211)
Q Consensus 51 p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~ 129 (211)
-++.+ ..|.++..|..-+-.++. .++|.. ....+-.+|.--.+|.++.||.+|+-+|+-+|-.- .+.+...
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~al--Ay~GTg-n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~~~lv~t 590 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLAL--AYVGTG-NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----RDLLVGT 590 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHH--HHhcCC-cchhHhhhheeecccCchHHHHHHHHheeeeEecC-----cchhhHH
Confidence 34555 667777777655444432 123321 12223333444468899999999998888776542 2344445
Q ss_pred HHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 130 VKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
+.-|+++-++.||+..|..++-.|..-|.. .-..++..|..|...-||++|.-.++-+.-...++
T Consensus 591 velLs~shN~hVR~g~AvaLGiacag~G~~---~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 591 VELLSESHNFHVRAGVAVALGIACAGTGDK---VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred HHHhhhccchhhhhhhHHHhhhhhcCCccH---HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 555677778999999999999999988876 45566777899999999999998888776665553
No 113
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.46 E-value=0.17 Score=45.86 Aligned_cols=178 Identities=15% Similarity=0.127 Sum_probs=124.2
Q ss_pred HHHhcCCCHHHHHHHHHHH---HHHHHHhCCcchhhchhhhhhh--c----CCChHHHHHHHHHHHhccccccCc---cc
Q 039154 15 TDELKNDDIQLRLNSIRRL---STIARALGEERTPKELIPFLSA--N----NDDDDEVLLAMAEELGVFIPYVGG---VE 82 (211)
Q Consensus 15 ~~~l~s~~~~~R~~a~~~l---~~ia~~lg~~~~~~~L~p~l~~--~----~D~~~~VR~~~a~~L~~l~~~ig~---~~ 82 (211)
-.+++..+++.|.-++... .+.+.-.|. ..++++...... . ...+..++++++..+..+...+.. .-
T Consensus 337 ~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i-~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~ 415 (678)
T KOG1293|consen 337 CASLAASDEKYRLILLNETLILNHLEYGLEI-SLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGL 415 (678)
T ss_pred HHHHhhcchhhhHHHhhhhhhhhhhhhhcch-hHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456677777777665443 233333332 234455544332 2 235667899999999988886531 12
Q ss_pred cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154 83 HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (211)
Q Consensus 83 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~ 159 (211)
....+...+.+++.|++..|...+..++.++.-.+++ ..+.+-.+..+.++..+..+.+|..+...+-.+.-.....
T Consensus 416 ~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~ 495 (678)
T KOG1293|consen 416 KRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEE 495 (678)
T ss_pred ccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHH
Confidence 2334555566677999999999999999999988876 4566778888999999999999988887776664444433
Q ss_pred -----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 160 -----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 160 -----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
..+-.......+++|++|.|...|.+-+.++..-
T Consensus 496 ~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 496 EKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 2344456677889999999999999999888653
No 114
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=0.04 Score=52.46 Aligned_cols=167 Identities=13% Similarity=0.056 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc----ccccccchHHhhhcc
Q 039154 26 RLNSIRRLSTIARALGEE----RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV----EHAHVLLPPLETLCT 96 (211)
Q Consensus 26 R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~----~~~~~llp~l~~l~~ 96 (211)
|+.|+..|+..- .+|+= ...--++||+.+ +|....|.|-.++--+..+..+ .+. -.++..-..+...+.
T Consensus 487 RlRAL~LL~RFL-DlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv-D~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 487 RLRALVLLARFL-DLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAV-DPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHh-ccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhc-CchhHHHHHhccCceeEEEEec
Confidence 555655554331 23331 123456899999 9999999999888777766552 211 111111112222223
Q ss_pred c-h--hhHHHHHHHHHHHHHHhhcCh--hHH-HHhhHHHHHHhhcCC-CchHHHhHHhHHHhhccCCChH----HHHHHH
Q 039154 97 V-E--ETCMRDKAVESLCRIGSQMRE--SDL-VDWFIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI----LKTELR 165 (211)
Q Consensus 97 d-~--~~~VR~~a~~~l~~l~~~l~~--~~~-~~~l~p~i~~l~~d~-~~~vR~~~a~~l~~l~~~~~~~----~~~~l~ 165 (211)
+ . .++=|..|+-.|..++..+.. +.+ ...++.......+|+ .|-.|.=+|-+++.+-+..... .+..-.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 3 1 247788999999999888644 322 344666667777775 6889999999999998877665 345566
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 166 SIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
.-+..++.|+.|+||.||..+|+.|....
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 77788999999999999999999999963
No 115
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.41 E-value=0.15 Score=51.98 Aligned_cols=191 Identities=10% Similarity=0.046 Sum_probs=120.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCc------chh-hchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--cccccccc
Q 039154 19 KNDDIQLRLNSIRRLSTIARALGEE------RTP-KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLL 88 (211)
Q Consensus 19 ~s~~~~~R~~a~~~l~~ia~~lg~~------~~~-~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~ll 88 (211)
-+.|..++..|+..|..+|..+-.. ... .-|-|+-.- ....+.+||..+.+.+.++...-+. ..-|..++
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence 3557888999999998888655442 123 344465443 3455678999999999888775443 22477788
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcCh------hHHHHhhHHHHHHhhcCCCc-h--------HHHhHHhHHHh--
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRE------SDLVDWFIPLVKRLAAGEWF-T--------ARVSACGLFHI-- 151 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~------~~~~~~l~p~i~~l~~d~~~-~--------vR~~~a~~l~~-- 151 (211)
.+|..-+.+++..+=..|.+++..+...+-. ......++..+.++++.... . .|. ++.-+..
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~-~~~~La~~~ 1305 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRF-CATKLAEGD 1305 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHH-HHHHHHhcc
Confidence 8888777888877778888888877655221 24445566666666654321 1 111 1111100
Q ss_pred hc---c-----------------------CCChH-HHHHHHHHHHHh---cCCCCHHHHHHHHHhhHHHHhhhCchh---
Q 039154 152 AY---P-----------------------SAPDI-LKTELRSIYTQL---CQDDMPMVRRSAASNLRKFAATVEPAH--- 198 (211)
Q Consensus 152 l~---~-----------------------~~~~~-~~~~l~~~~~~L---~~D~~~~VR~aaa~~l~~~~~~~~~~~--- 198 (211)
+. . ..+.+ ....|+|++..| +.|+.++||..|.+.|-.+....|...
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 00 0 00111 223466666655 889999999999999988888877532
Q ss_pred -----hHHHHHHHHHhh
Q 039154 199 -----LKTDIMSIFEDL 210 (211)
Q Consensus 199 -----~~~~llp~~~~L 210 (211)
+..-|.|+|..+
T Consensus 1386 ~W~~if~~VLFPIFd~l 1402 (1780)
T PLN03076 1386 LWERVFESVLFPIFDYV 1402 (1780)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 455688888654
No 116
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=96.40 E-value=0.0056 Score=41.96 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=52.3
Q ss_pred CCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCC--HHHHHHHHHhhHHHHhhhCchhhHHHHHHHHH
Q 039154 136 GEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM--PMVRRSAASNLRKFAATVEPAHLKTDIMSIFE 208 (211)
Q Consensus 136 d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~--~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~ 208 (211)
|+.|..|..+|.++..++..++.. .+..+...|.+.+.|+. ...+-.|...|.. +|++.+..-++|-++
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~----lG~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSA----LGPEAVRALILPNLK 90 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----HHHHHHHHhhccCcC
Confidence 567899999999999998888865 57788888888888766 4566666666644 377888888888654
No 117
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.40 E-value=0.1 Score=51.39 Aligned_cols=140 Identities=15% Similarity=0.098 Sum_probs=104.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp 89 (211)
|..++--+..+-+..|..|++-|..|+.+=+.-.++.+.---+.. ..|....||-+|.+-+|.++-.. ++.......
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~--~e~~~qyY~ 895 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI--PELIFQYYD 895 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc--HHHHHHHHH
Confidence 667777787777999999999999987655544566666666666 89999999999999999876532 333333444
Q ss_pred HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhh
Q 039154 90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIA 152 (211)
Q Consensus 90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l 152 (211)
-+.+-..|....||..+++.+.++|...+.=.....++--+.+-.+|+.-.+...+++.|-++
T Consensus 896 ~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 896 QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 455666799999999999999999999876444444444455556787777888888888776
No 118
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.063 Score=51.13 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=90.4
Q ss_pred chhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchH-HhhhccchhhHHHHHHHHHHHHHHhh-cChhHHHH
Q 039154 48 ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVEETCMRDKAVESLCRIGSQ-MRESDLVD 124 (211)
Q Consensus 48 ~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~-l~~l~~d~~~~VR~~a~~~l~~l~~~-l~~~~~~~ 124 (211)
.++-.+.+ +.|.+-.||-++|+-+|.+..-+.. +.....+.. +.-+.--+++..-..|+-+|++++.. +-.-..-.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~-~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~ 419 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP-ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE 419 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH-HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34444555 6777778888888888877765542 222222222 22122222355555777777777654 11222234
Q ss_pred hhHHHHHHhhc-C-------CCchHHHhHHhHHHhhccCCChH----HHHHH-HHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154 125 WFIPLVKRLAA-G-------EWFTARVSACGLFHIAYPSAPDI----LKTEL-RSIYTQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 125 ~l~p~i~~l~~-d-------~~~~vR~~~a~~l~~l~~~~~~~----~~~~l-~~~~~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
.++|.+.+-.+ | ....||-++|+..=+++...++. +...| .-.+...+-|++-.+|++|+.++.+.+
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENV 499 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence 56666654332 2 23579999999999998887766 22222 234445567999999999999999887
Q ss_pred hhhC
Q 039154 192 ATVE 195 (211)
Q Consensus 192 ~~~~ 195 (211)
-..|
T Consensus 500 GR~~ 503 (1133)
T KOG1943|consen 500 GRQG 503 (1133)
T ss_pred ccCC
Confidence 6644
No 119
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.28 Score=45.99 Aligned_cols=180 Identities=18% Similarity=0.201 Sum_probs=130.1
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCCcc-----hhhchhhhhhh-cCCC-hHHHHHHHHHHHhccccccCcc-
Q 039154 11 IAVLTDELKND-DIQLRLNSIRRLSTIARALGEER-----TPKELIPFLSA-NNDD-DDEVLLAMAEELGVFIPYVGGV- 81 (211)
Q Consensus 11 l~~l~~~l~s~-~~~~R~~a~~~l~~ia~~lg~~~-----~~~~L~p~l~~-~~D~-~~~VR~~~a~~L~~l~~~ig~~- 81 (211)
++.++..|+.. |+...++++..+.++- .+|.|. -.+.++|-+.. ++++ +.++..-||.+|..+.+++...
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L-~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEML-SMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHH-hhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 67889999988 8999999999888875 455554 34677888888 6665 6889999999999999977532
Q ss_pred --ccccccchH-HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh----hHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154 82 --EHAHVLLPP-LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW----FIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (211)
Q Consensus 82 --~~~~~llp~-l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~----l~p~i~~l~~d~~~~vR~~~a~~l~~l~~ 154 (211)
-..+.-+|. +.+|..-+--.|-+.+..+|.+|...-+...++.- ++.++-=++. .+-..+...-..+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi----~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSI----HAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 122345566 57788888889999999999999999887655421 2222221111 122333444445666
Q ss_pred CCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 155 SAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 155 ~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
.+..+ +.-+-+|++-.+++-++..+=..++-++..++..+-
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 66665 677889999999998888888888888888888764
No 120
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.19 E-value=0.018 Score=56.26 Aligned_cols=161 Identities=13% Similarity=0.056 Sum_probs=106.4
Q ss_pred hchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc--ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH
Q 039154 47 KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV--EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV 123 (211)
Q Consensus 47 ~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~--~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~ 123 (211)
.-++|.+.. +.-++.++|..+..-+|.+...-+.. +.-..++..+-.-+.|-...||.+++++.......-+.-.-.
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 345688888 88999999999988888776643321 223344555555667888999999999988877664333333
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh-h--------
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT-V-------- 194 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~-~-------- 194 (211)
..+.-.+.....|...++|.-++.....+... .-.+...++......+.|.-|.||+-|.+.|.++-+. +
T Consensus 338 ~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~-~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k 416 (1266)
T KOG1525|consen 338 STILLALRERDLDEDVRVRTQVVIVACDVMKF-KLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGK 416 (1266)
T ss_pred HHHHHHHHhhcCChhhhheeeEEEEEeehhHh-hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 34444455566777777776554332222111 0112223777888889999999999999999999884 1
Q ss_pred ----CchhhHHHHHHHHH
Q 039154 195 ----EPAHLKTDIMSIFE 208 (211)
Q Consensus 195 ----~~~~~~~~llp~~~ 208 (211)
.-+|+..+|+-++.
T Consensus 417 ~~t~~~swIp~kLL~~~y 434 (1266)
T KOG1525|consen 417 EITPPFSWIPDKLLHLYY 434 (1266)
T ss_pred cccccccccchhHHhhHh
Confidence 12577777776653
No 121
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.068 Score=47.99 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=103.0
Q ss_pred HHHH-hcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchH
Q 039154 14 LTDE-LKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (211)
Q Consensus 14 l~~~-l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~ 90 (211)
+|++ +-|+|+.-|-.-+-.+ -..-.|..+ ....++++- ..|.+++||+++.-+||-++= . ....+...
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~--alAy~GTgn~~vv~~lLh~a--vsD~nDDVrRAAViAlGfvc~--~---D~~~lv~t 590 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSL--ALAYVGTGNLGVVSTLLHYA--VSDGNDDVRRAAVIALGFVCC--D---DRDLLVGT 590 (926)
T ss_pred HHHHHhcCchHHhhhccHHHH--HHHHhcCCcchhHhhhheee--cccCchHHHHHHHHheeeeEe--c---CcchhhHH
Confidence 4444 5677788885444333 223455543 233333332 468899999999999998763 1 12244455
Q ss_pred HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHH
Q 039154 91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSI 167 (211)
Q Consensus 91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~ 167 (211)
++-|.+..+..||...+-+|+-.|.--+.... ...+..|..|..--||.+++-..+-+.-+..++ ..+.+..-
T Consensus 591 velLs~shN~hVR~g~AvaLGiacag~G~~~a----~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~ 666 (926)
T COG5116 591 VELLSESHNFHVRAGVAVALGIACAGTGDKVA----TDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKK 666 (926)
T ss_pred HHHhhhccchhhhhhhHHHhhhhhcCCccHHH----HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHH
Confidence 55566666899999999999988887766544 445667788999889999988877776665555 46778888
Q ss_pred HHHhcCCCCH
Q 039154 168 YTQLCQDDMP 177 (211)
Q Consensus 168 ~~~L~~D~~~ 177 (211)
|.++..|...
T Consensus 667 f~~vI~~Khe 676 (926)
T COG5116 667 FNRVIVDKHE 676 (926)
T ss_pred HHHHHhhhhH
Confidence 8888887654
No 122
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.11 E-value=0.2 Score=38.74 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHH
Q 039154 25 LRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMR 103 (211)
Q Consensus 25 ~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR 103 (211)
+|+.|+.-|..+++..++ ..+..+... +-|. ...+. ..-.+++.-++.|.+..||
T Consensus 2 vR~~Al~~L~al~k~~~~----r~l~~yW~~llP~~-----------------~~~~~---~~~~sLlt~il~Dp~~kvR 57 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDK----RSLFGYWPALLPDS-----------------VLQGR---PATPSLLTCILKDPSPKVR 57 (182)
T ss_pred hhHHHHHHHHHHHHhcCC----ceeHhhHHHHCCCC-----------------CCcCC---CCCcchhHHHHcCCchhHH
Confidence 688889999888887764 344555555 3333 01111 1223445667788889999
Q ss_pred HHHHHHHHHHHhhcCh-----hH----------HHHhhHHH--------HHHhhcCCCchHHHhHHhHHHhhccCCC---
Q 039154 104 DKAVESLCRIGSQMRE-----SD----------LVDWFIPL--------VKRLAAGEWFTARVSACGLFHIAYPSAP--- 157 (211)
Q Consensus 104 ~~a~~~l~~l~~~l~~-----~~----------~~~~l~p~--------i~~l~~d~~~~vR~~~a~~l~~l~~~~~--- 157 (211)
.+|+..+..+.+...+ ++ ....+-.. +..+....+..+-..+.+++..+....+
T Consensus 58 ~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r 137 (182)
T PF13251_consen 58 AAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR 137 (182)
T ss_pred HHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh
Confidence 9998888888776422 00 01111111 1223334455566666777776655544
Q ss_pred --hHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 158 --DILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 158 --~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
.+....++.....++.+.++.||-++...++.+...-++
T Consensus 138 L~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~~ 178 (182)
T PF13251_consen 138 LPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQPP 178 (182)
T ss_pred cCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCCC
Confidence 446677777788888899999999999999999887553
No 123
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.16 Score=46.69 Aligned_cols=178 Identities=12% Similarity=0.010 Sum_probs=94.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHH
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l 91 (211)
.+...|.|..+-+|..|+..+..+--..+ ..-..-+|-+.+ +.|++|.|.-++...+=.+++- .+...-.+-|.|
T Consensus 148 Dv~tLL~sskpYvRKkAIl~lykvFLkYP--eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArK--nPknyL~LAP~f 223 (877)
T KOG1059|consen 148 DVFTLLNSSKPYVRKKAILLLYKVFLKYP--EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARK--NPQNYLQLAPLF 223 (877)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhhh--HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhh--CCcccccccHHH
Confidence 34555666666677777766666643222 222333455555 6777777766666666555552 122223455665
Q ss_pred hhhccch-hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCch-HHHhHHhHHH--hhccCCChH--HHHHHH
Q 039154 92 ETLCTVE-ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFT-ARVSACGLFH--IAYPSAPDI--LKTELR 165 (211)
Q Consensus 92 ~~l~~d~-~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~-vR~~~a~~l~--~l~~~~~~~--~~~~l~ 165 (211)
-+++.+. +-.+=...++-++.+...-+ -..+.++|-+..+.+..+.. +-+-|..... .+..+.+.. ...--+
T Consensus 224 fkllttSsNNWmLIKiiKLF~aLtplEP--RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCv 301 (877)
T KOG1059|consen 224 YKLLVTSSNNWVLIKLLKLFAALTPLEP--RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCV 301 (877)
T ss_pred HHHHhccCCCeehHHHHHHHhhccccCc--hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHH
Confidence 5554433 33333344444443333222 12344555555565554421 1111222211 222333333 223344
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 166 SIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
.-+..++.|+++..|.-..-+++++++..+.
T Consensus 302 qKLr~fiedsDqNLKYlgLlam~KI~ktHp~ 332 (877)
T KOG1059|consen 302 QKLRIFIEDSDQNLKYLGLLAMSKILKTHPK 332 (877)
T ss_pred HHHhhhhhcCCccHHHHHHHHHHHHhhhCHH
Confidence 5566789999999999999999999997664
No 124
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=96.04 E-value=0.35 Score=37.87 Aligned_cols=162 Identities=16% Similarity=0.054 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHH-HHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch-h
Q 039154 23 IQLRLNSIRRLSTI-ARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-E 99 (211)
Q Consensus 23 ~~~R~~a~~~l~~i-a~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~-~ 99 (211)
..+|.-.++.+.+= .+.++.. +....+..+ ..++..|.|..++.-++...+... ...++.+..+..+- +
T Consensus 28 ~GV~~p~lr~lak~~~~~~~~~---~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~ 99 (213)
T PF08713_consen 28 LGVRTPDLRKLAKDIYKELKLS---EELYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDN 99 (213)
T ss_dssp ----HHHHHHHHHHHHHHHCTS---HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCC
T ss_pred cCcCcHHHHHHHHHHHhhcccc---hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCc
Confidence 45555554444321 2233333 445555666 677788888888887766443222 22455666666644 4
Q ss_pred hHHHHH-HHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHH
Q 039154 100 TCMRDK-AVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM 178 (211)
Q Consensus 100 ~~VR~~-a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~ 178 (211)
+.+-.. |.+.+..+...- ....+.+.+++++++.-+|.++.-.+...+.. ...+.++.....+..|++.-
T Consensus 100 W~~~D~~~~~~~~~~~~~~------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~ 170 (213)
T PF08713_consen 100 WATCDSLCSKLLGPLLKKH------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYY 170 (213)
T ss_dssp HHHHHHHTHHHHHHHHHHH------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HH
T ss_pred chhhhHHHHHHHHHHHHhh------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHH
Confidence 544433 345555554332 66788888998888855555554443333333 44678888989999999999
Q ss_pred HHHHHHHhhHHHHhhhCchhhHHH
Q 039154 179 VRRSAASNLRKFAATVEPAHLKTD 202 (211)
Q Consensus 179 VR~aaa~~l~~~~~~~~~~~~~~~ 202 (211)
||++++-.|.++++. .|+.+.+.
T Consensus 171 vq~ai~w~L~~~~~~-~~~~v~~~ 193 (213)
T PF08713_consen 171 VQKAIGWALREIGKK-DPDEVLEF 193 (213)
T ss_dssp HHHHHHHHHHHHCTT--HHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CHHHHHHH
Confidence 999999999999886 45444433
No 125
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.01 E-value=0.24 Score=44.71 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=101.7
Q ss_pred chhhchhhhhhh-cCCChHHHHHHHHHHHhccccc-cCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--
Q 039154 44 RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPY-VGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE-- 119 (211)
Q Consensus 44 ~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~-ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~-- 119 (211)
+....++|++.. +.|.-++|-..+|.++-.++.- +| ++..+.....|..+++......|-+|+..|..++.+-+.
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG-SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 566788899999 8999999999999988876653 34 344556667788888888888899999999888877543
Q ss_pred -------------------------------hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154 120 -------------------------------SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (211)
Q Consensus 120 -------------------------------~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~ 168 (211)
++.-+.++..|..+.+|-+-.-+..+...+..++..++.. +...+..+
T Consensus 339 ~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k-~~s~l~FL 417 (898)
T COG5240 339 SVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK-KLSYLDFL 417 (898)
T ss_pred eecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH-HHHHHHHH
Confidence 2223446667777777766555666666666666666655 22222222
Q ss_pred H-HhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 169 T-QLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 169 ~-~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
. .||+.-..+-++++...+..+.+..+
T Consensus 418 ~~~L~~eGg~eFK~~~Vdaisd~~~~~p 445 (898)
T COG5240 418 GSSLLQEGGLEFKKYMVDAISDAMENDP 445 (898)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhhCc
Confidence 2 34444456667777776666666553
No 126
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.053 Score=50.14 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=80.2
Q ss_pred hhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHH
Q 039154 51 PFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPL 129 (211)
Q Consensus 51 p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~ 129 (211)
..+.+ ++..+..|--.|.-.||+ +++++....+.|-.+++++..++-||.+|+-+..++..+.+.-. ++++|-
T Consensus 110 NslknDL~s~nq~vVglAL~alg~----i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~--e~f~~~ 183 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGN----ICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV--EHFVIA 183 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhc----cCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH--HHhhHH
Confidence 33444 566666665666666666 44577788999999999999999999999999999998876543 666677
Q ss_pred HHHhhcCCCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhc
Q 039154 130 VKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLC 172 (211)
Q Consensus 130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~ 172 (211)
..++.++....|=.+....+-.+|..-... +.+++.+-|+.-+
T Consensus 184 ~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iL 228 (866)
T KOG1062|consen 184 FRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKIL 228 (866)
T ss_pred HHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 777777777777666666666666653333 2333444444443
No 127
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.058 Score=49.96 Aligned_cols=164 Identities=14% Similarity=0.203 Sum_probs=110.4
Q ss_pred hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch-hhHHHHHHHHHHHHHHhhcChh--H
Q 039154 45 TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCMRDKAVESLCRIGSQMRES--D 121 (211)
Q Consensus 45 ~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l~~~--~ 121 (211)
..+.++|-+....+...-.||-+|--+|..+.+--..+....+.-.+-++++|. +..||.+++.++..+....... .
T Consensus 485 l~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ds 564 (978)
T KOG1993|consen 485 LQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDS 564 (978)
T ss_pred HHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhh
Confidence 445556666544556677999999999988774444555556666788899999 4679999999999999886543 2
Q ss_pred HHHh---hHHHHHHhhcC-CCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcC--CCCHHHHHHHHHhhHHHHh
Q 039154 122 LVDW---FIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQ--DDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 122 ~~~~---l~p~i~~l~~d-~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~--D~~~~VR~aaa~~l~~~~~ 192 (211)
+..+ +.-.+.++.+. .....|..+...++.+...+++. +...++.++-.|-+ .+++..|.+....+.+++.
T Consensus 565 Flp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~ 644 (978)
T KOG1993|consen 565 FLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVN 644 (978)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHH
Confidence 2211 11112222221 23456777877777777666654 34455555444433 3679999999999999999
Q ss_pred hhCc--hhhHHHHHHHHH
Q 039154 193 TVEP--AHLKTDIMSIFE 208 (211)
Q Consensus 193 ~~~~--~~~~~~llp~~~ 208 (211)
.+|. .....-++|++.
T Consensus 645 alg~qS~~~~~fL~pVIe 662 (978)
T KOG1993|consen 645 ALGAQSFEFYPFLYPVIE 662 (978)
T ss_pred HhccCCccchHHHHHHHH
Confidence 9994 466777888774
No 128
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.12 Score=47.99 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp 89 (211)
.+.+++.|+|.|.-+--.|...++. ..++| ...+|.|.+.+ ++..++.||+-|+-+...+.... ++..+.+++
T Consensus 109 tNslknDL~s~nq~vVglAL~alg~---i~s~E-mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e~f~~ 182 (866)
T KOG1062|consen 109 TNSLKNDLNSSNQYVVGLALCALGN---ICSPE-MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVEHFVI 182 (866)
T ss_pred HHHHHhhccCCCeeehHHHHHHhhc---cCCHH-HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHHHhhH
Confidence 4566777888776555455555544 34444 45689999999 99999999999988887766532 334455555
Q ss_pred HHhhhccchhhHHH
Q 039154 90 PLETLCTVEETCMR 103 (211)
Q Consensus 90 ~l~~l~~d~~~~VR 103 (211)
...+++.+.+.-|=
T Consensus 183 ~~~~lL~ek~hGVL 196 (866)
T KOG1062|consen 183 AFRKLLCEKHHGVL 196 (866)
T ss_pred HHHHHHhhcCCcee
Confidence 55555555555553
No 129
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.83 E-value=0.029 Score=53.79 Aligned_cols=110 Identities=14% Similarity=0.077 Sum_probs=83.6
Q ss_pred CccccccccchHHhhhccch----hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154 79 GGVEHAHVLLPPLETLCTVE----ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (211)
Q Consensus 79 g~~~~~~~llp~l~~l~~d~----~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~ 154 (211)
|.......+.|++.++++.. ++.+|.+|.-+|.++.. ++.+.+..++--++.-|.+.++.++|.++.-.++.++-
T Consensus 912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 33556667789999988543 57899999999998754 35566666665566667779999999999888888866
Q ss_pred CCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 155 ~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
.++. ..+.+-+.+..-++|+++.||++|..-+..+
T Consensus 991 ~fpn-lie~~T~~Ly~rL~D~~~~vRkta~lvlshL 1025 (1251)
T KOG0414|consen 991 RFPN-LIEPWTEHLYRRLRDESPSVRKTALLVLSHL 1025 (1251)
T ss_pred hccc-ccchhhHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 6554 2456677788889999999999998876544
No 130
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.80 E-value=0.082 Score=40.02 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=83.7
Q ss_pred hchhhhhhh-c-CCChHHHHHHHHHHHhccccccCccccccccchHHhhh-ccchhhHHHHHHHHHHHHHHhh-cChhHH
Q 039154 47 KELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL-CTVEETCMRDKAVESLCRIGSQ-MRESDL 122 (211)
Q Consensus 47 ~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l-~~d~~~~VR~~a~~~l~~l~~~-l~~~~~ 122 (211)
-+|++.+.+ + .+.++.+|+++.+.+|.++. +.+-.++ .+-.-...- ..+.+...... .+...... -..|..
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k-~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~ee~y 83 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHK-SIQKSLDSKSSENSNDESTDI---SLPMMGISPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHh-cccccCCccccccccccchhh---HHhhccCCCchHHHH
Confidence 467788888 4 46679999999999999766 3332221 110000000 01111111111 11111111 122334
Q ss_pred HHhhHHHHHHhhcCCCch-HHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 123 VDWFIPLVKRLAAGEWFT-ARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 123 ~~~l~p~i~~l~~d~~~~-vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
....+..+.+..+|++.. ...++...+..++...|.. +..+++|.|++.++......|....+.|..++..+
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 445566667777777742 3334555555555545544 78999999999999888899999999999988765
No 131
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.32 Score=45.03 Aligned_cols=186 Identities=15% Similarity=0.203 Sum_probs=124.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC-ccccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG-GVEHAHVLL 88 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig-~~~~~~~ll 88 (211)
=..+++.|++.+.++++++++.+ |+..+.-+...+.+.-++.- +--.+-+.++-.---|.-+=+.=+ |.-..+.||
T Consensus 22 ~~~ik~~Lek~~~~~KIeamK~i--i~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMIL 99 (948)
T KOG1058|consen 22 EDEIKEKLEKGDDEVKIEAMKKI--IALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMIL 99 (948)
T ss_pred hHHHHHHHhcCChHHHHHHHHHH--HHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHH
Confidence 35688889999999999999987 44566667777766666665 666667776666555544333322 222222332
Q ss_pred --hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH--HHHHH
Q 039154 89 --PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTEL 164 (211)
Q Consensus 89 --p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l 164 (211)
..+.+=+++++..||-.... +.-++...++-+-++|.+..-.+.+..-||+.+.-.+..++.....= ...++
T Consensus 100 vcna~RkDLQHPNEyiRG~TLR----FLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeL 175 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLR----FLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPEL 175 (948)
T ss_pred HHHHHhhhccCchHhhcchhhh----hhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHH
Confidence 44556667788889976654 34445555677889999999999999899999988888887762211 23445
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHH
Q 039154 165 RSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFE 208 (211)
Q Consensus 165 ~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~ 208 (211)
+.-| |..+.+|..++.|.-.| ...+||....++...+.
T Consensus 176 i~~f--L~~e~DpsCkRNAFi~L----~~~D~ErAl~Yl~~~id 213 (948)
T KOG1058|consen 176 IESF--LLTEQDPSCKRNAFLML----FTTDPERALNYLLSNID 213 (948)
T ss_pred HHHH--HHhccCchhHHHHHHHH----HhcCHHHHHHHHHhhHh
Confidence 4443 56788888888888776 44566666555554443
No 132
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.77 E-value=0.098 Score=50.34 Aligned_cols=177 Identities=15% Similarity=0.060 Sum_probs=109.5
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c----CCChHHHHHHHHHHHhccccccCccc
Q 039154 8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-N----NDDDDEVLLAMAEELGVFIPYVGGVE 82 (211)
Q Consensus 8 ~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~----~D~~~~VR~~~a~~L~~l~~~ig~~~ 82 (211)
.++-..++..-.+||... ++..+.+---..|+...-..+.|++.+ | .-.+|+.+.+|.-+|+.+.- ++.+.
T Consensus 882 ~~~e~dlig~tseDd~~d---~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~f 957 (1251)
T KOG0414|consen 882 FTVELDLIGGTSEDDLAD---LISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAEF 957 (1251)
T ss_pred CCccccccCCCcchhHHH---HHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHHH
Confidence 334444444444444432 333444444456777778888999998 7 45679999999999999987 55444
Q ss_pred cccccchHHhhhcc-chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHH
Q 039154 83 HAHVLLPPLETLCT-VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK 161 (211)
Q Consensus 83 ~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~ 161 (211)
+ ..=+|.|....+ .+++.||..++-+++.++=.++.-. +-.-+.+.+...|++..||..|.-.+.-+...--- -.
T Consensus 958 c-es~l~llftimeksp~p~IRsN~VvalgDlav~fpnli--e~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmi-KV 1033 (1251)
T KOG0414|consen 958 C-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLI--EPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMI-KV 1033 (1251)
T ss_pred H-HHHHHHHHHHHhcCCCceeeecchheccchhhhccccc--chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhh-Hh
Confidence 3 444555555444 7789999999999999887775411 11223344556888888888887665544211000 01
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
+--++-...++.|+++++|--|=.-+.++.+
T Consensus 1034 KGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 1034 KGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred cccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 1224445667778888888776644444443
No 133
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.76 E-value=0.014 Score=57.09 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=89.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
+..|..+|.+++..+|..|++.++.+-..-+... +-..+...+.. +.|..++||..+.+...+..-.=........+
T Consensus 261 ip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~ 340 (1266)
T KOG1525|consen 261 IPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTI 340 (1266)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHH
Confidence 5567778999999999999999988765444332 23445555555 99999999999999887655431111122233
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~ 154 (211)
.-.+....-|++..||.-.+-....+. .+.-..+.. ++..+.....|..|.||.-|...+..+|.
T Consensus 341 ~~~l~~~~~D~~~rir~~v~i~~~~v~-~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 341 LLALRERDLDEDVRVRTQVVIVACDVM-KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHhhcCChhhhheeeEEEEEeehh-HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 344555556666666643221111110 111112223 66777777889999999999888888776
No 134
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.70 E-value=0.043 Score=51.47 Aligned_cols=140 Identities=15% Similarity=0.199 Sum_probs=106.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--cccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHA 84 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~ 84 (211)
...+....++.+-.+|-.....|+++-..++.+. .-..|+|.+.+ +.-.+.+||...-..++.+...-+. .++.
T Consensus 869 vP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~ 948 (1030)
T KOG1967|consen 869 VPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL 948 (1030)
T ss_pred HHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH
Confidence 3456667777778888888888888877666542 33578899999 7778899999998888877664443 4567
Q ss_pred cccchHHhhhccchh---hHHHHHHHHHHHHHHhhcChhHH---HHhhHHHHHHhhcCCCchHHHhHHhHHH
Q 039154 85 HVLLPPLETLCTVEE---TCMRDKAVESLCRIGSQMRESDL---VDWFIPLVKRLAAGEWFTARVSACGLFH 150 (211)
Q Consensus 85 ~~llp~l~~l~~d~~---~~VR~~a~~~l~~l~~~l~~~~~---~~~l~p~i~~l~~d~~~~vR~~~a~~l~ 150 (211)
+.+.|.+-.+.+|.+ ..||+.|+++|..+.+..+..-+ ...++..+.+-..|+.--||+.|+..=+
T Consensus 949 ~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 949 STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 789999999999886 68999999999999998887644 3445555556667777778888876533
No 135
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.65 E-value=0.29 Score=44.14 Aligned_cols=176 Identities=11% Similarity=0.091 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHhCC--cchhhchhhhhhh-cCCC-----hHHHHHHHHHHHhccccccCc--cccccccchHHhhhc
Q 039154 26 RLNSIRRLSTIARALGE--ERTPKELIPFLSA-NNDD-----DDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLC 95 (211)
Q Consensus 26 R~~a~~~l~~ia~~lg~--~~~~~~L~p~l~~-~~D~-----~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~ 95 (211)
.-+.+.-|..|-+..|+ +.....|+.+|.+ ++.. ..+|-.++ +.+...+|. +.+.+.+.|.+..-+
T Consensus 573 qSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aI----sal~~sl~e~Fe~y~~~fiPyl~~al 648 (858)
T COG5215 573 QSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAI----SALSTSLEERFEQYASKFIPYLTRAL 648 (858)
T ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHH----HHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 44677888888888888 5666667777766 4332 34455544 333332322 445677889988888
Q ss_pred cchhhHHHHHHHHHHHHHHhhcChhH--HHHhhHHHHHHhhcCCCc--hHHHhHHhHHHhhccCCChHH---HHHHHHHH
Q 039154 96 TVEETCMRDKAVESLCRIGSQMRESD--LVDWFIPLVKRLAAGEWF--TARVSACGLFHIAYPSAPDIL---KTELRSIY 168 (211)
Q Consensus 96 ~d~~~~VR~~a~~~l~~l~~~l~~~~--~~~~l~p~i~~l~~d~~~--~vR~~~a~~l~~l~~~~~~~~---~~~l~~~~ 168 (211)
+..+..|-..|+.-++.++..++.+. ..+.++..+.+..+++.- .++-++...|+.++..+|..+ .+.++-+|
T Consensus 649 n~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~ 728 (858)
T COG5215 649 NCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLF 728 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888999999999999999998874 345566666665555542 467788999999999999984 44455555
Q ss_pred HHhcC-----------CCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154 169 TQLCQ-----------DDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF 207 (211)
Q Consensus 169 ~~L~~-----------D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~ 207 (211)
.+..+ |-...+|.....++..++.... ...+.++|++
T Consensus 729 qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~--nr~~~v~Pyv 776 (858)
T COG5215 729 QQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSK--NRVRSVLPYV 776 (858)
T ss_pred HHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhh--hhHHHhhhHH
Confidence 55443 2223566666666666666655 2234455554
No 136
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=0.66 Score=42.84 Aligned_cols=193 Identities=16% Similarity=0.172 Sum_probs=125.8
Q ss_pred HHHHHHhcCCCHHH---HH-HHHHHHHHHHHHhCCcc------------hhhchhhhhhh-cCCChHHHHHHHHHHHhcc
Q 039154 12 AVLTDELKNDDIQL---RL-NSIRRLSTIARALGEER------------TPKELIPFLSA-NNDDDDEVLLAMAEELGVF 74 (211)
Q Consensus 12 ~~l~~~l~s~~~~~---R~-~a~~~l~~ia~~lg~~~------------~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l 74 (211)
..|++.+-..++.. +. -|++.|..++..-|... ....++.++.- =.-+++.+|...-+.+..+
T Consensus 208 ~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~i 287 (938)
T KOG1077|consen 208 TSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERI 287 (938)
T ss_pred HHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence 44555554444333 22 34667777776666652 22233333333 2345566777777777665
Q ss_pred ccccC-----------------------------c-cccccccchHHhhhccchhhHHHHHHHHHHHHHHhh-cChhHHH
Q 039154 75 IPYVG-----------------------------G-VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQ-MRESDLV 123 (211)
Q Consensus 75 ~~~ig-----------------------------~-~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~-l~~~~~~ 123 (211)
..... . ++....-...|-.++++.|..+|.-|.+++..++.. +..+.++
T Consensus 288 Lnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK 367 (938)
T KOG1077|consen 288 LNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVK 367 (938)
T ss_pred HhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHH
Confidence 54221 0 011111234566788899999999999999998876 3446677
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch--hhHH
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA--HLKT 201 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~--~~~~ 201 (211)
++.--.+..|-.+....+|.-+..++..+|..-.. +.++.-+++.+..-++..|...+-...-++..+..| |...
T Consensus 368 ~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Na---k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVd 444 (938)
T KOG1077|consen 368 KHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA---KQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVD 444 (938)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHhchhhH---HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 77555566666688888999999999998876554 355555556666689999999999999999988664 7777
Q ss_pred HHHHHH
Q 039154 202 DIMSIF 207 (211)
Q Consensus 202 ~llp~~ 207 (211)
-++.++
T Consensus 445 viLqLi 450 (938)
T KOG1077|consen 445 VILQLI 450 (938)
T ss_pred HHHHHH
Confidence 666654
No 137
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=95.61 E-value=0.84 Score=36.03 Aligned_cols=147 Identities=16% Similarity=0.095 Sum_probs=91.7
Q ss_pred chhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch-hhH-HHHHHHHHHHHHHhhcChhHHHH
Q 039154 48 ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETC-MRDKAVESLCRIGSQMRESDLVD 124 (211)
Q Consensus 48 ~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~-~~~-VR~~a~~~l~~l~~~l~~~~~~~ 124 (211)
++..+..+ .....-|.|..+...+...-+..+.. -++.+..++.+- ++. |-..|-..++.+... ..
T Consensus 46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~ 114 (208)
T cd07064 46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLAD------YP 114 (208)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------Ch
Confidence 44454555 45556788888887776654433222 144455555443 333 344444444443322 12
Q ss_pred hhHHHHHHhhcCCC-chHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHH
Q 039154 125 WFIPLVKRLAAGEW-FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDI 203 (211)
Q Consensus 125 ~l~p~i~~l~~d~~-~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~l 203 (211)
...+.+.+++.|++ |..|.++...+. ..... ..+.+..+...++.|++.-|++++.=.|.++++. .|+++...|
T Consensus 115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~-~~~~~---~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~-d~~~V~~fl 189 (208)
T cd07064 115 EFEPVMDEWSTDENFWLRRTAILHQLK-YKEKT---DTDLLFEIILANLGSKEFFIRKAIGWALREYSKT-NPDWVRDFV 189 (208)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHH-HHHcc---CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc-CHHHHHHHH
Confidence 33677888888877 666666655443 22221 2357778888999999999999999999999997 888877776
Q ss_pred HHHHHhh
Q 039154 204 MSIFEDL 210 (211)
Q Consensus 204 lp~~~~L 210 (211)
-.....|
T Consensus 190 ~~~~~~m 196 (208)
T cd07064 190 AAHKLRL 196 (208)
T ss_pred HHhhhhc
Confidence 6554433
No 138
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.59 E-value=0.55 Score=37.78 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=27.6
Q ss_pred CCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhc-CCCCHHHHHHHHHhhHHHH
Q 039154 137 EWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC-QDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 137 ~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~-~D~~~~VR~aaa~~l~~~~ 191 (211)
..|++.++.+..+..+|...+. ...++++.+...+ ++..+.++..+.+.+..+.
T Consensus 96 ~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 96 EFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred chHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 3455555555555555554444 3444555555555 4555555555555555544
No 139
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.35 E-value=0.25 Score=42.18 Aligned_cols=129 Identities=13% Similarity=0.072 Sum_probs=84.3
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchh-hHHH--HHHHHHHHHHHhhc------ChhHHHHhh
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE-TCMR--DKAVESLCRIGSQM------RESDLVDWF 126 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~-~~VR--~~a~~~l~~l~~~l------~~~~~~~~l 126 (211)
+.++++.-|..+.+.|.. +...+.|+|.|..++.+.- ..+. ...+..+.++...+ .-+..-..+
T Consensus 187 ~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~L 259 (343)
T cd08050 187 LVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQL 259 (343)
T ss_pred HhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHH
Confidence 555667777777666554 3456788999888877762 3343 33344444444443 334445557
Q ss_pred HHHHHHh------hc----CCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCC--HHHHHHHHHhhHHHH
Q 039154 127 IPLVKRL------AA----GEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM--PMVRRSAASNLRKFA 191 (211)
Q Consensus 127 ~p~i~~l------~~----d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~--~~VR~aaa~~l~~~~ 191 (211)
+|.+.+. +. ++.|..|..+|.++..++..++.. .+..+...+.+-+.|+. ...+-.|...|..++
T Consensus 260 ip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 260 IPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 7777543 32 567999999999999999999887 56777777777777665 333666666665543
No 140
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.32 E-value=0.26 Score=42.05 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=82.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCC-------hHHHHHHHHHHHhccccc--cCcc
Q 039154 12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDD-------DDEVLLAMAEELGVFIPY--VGGV 81 (211)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~-------~~~VR~~~a~~L~~l~~~--ig~~ 81 (211)
..+.+.+.+++...|..|+..|. .+.--..|+|+|.. ..+. +-.+...+.+-...+... +.-+
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~-------tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le 253 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLR-------TDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLE 253 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhc-------cCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchH
Confidence 34556677788888887777663 44556789999886 3221 222222222222222221 1123
Q ss_pred ccccccchHHhhhc----------cchhhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCC--CchHHHhHHh
Q 039154 82 EHAHVLLPPLETLC----------TVEETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGE--WFTARVSACG 147 (211)
Q Consensus 82 ~~~~~llp~l~~l~----------~d~~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~--~~~vR~~~a~ 147 (211)
-..+.|+|.+...+ .++.|.+|+.|++.+..++..++.. .+...+...+.+...|+ .....+.+..
T Consensus 254 ~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~ 333 (343)
T cd08050 254 PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIV 333 (343)
T ss_pred HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHH
Confidence 34445666655433 3567899999999999999999886 44555554555444443 3556888888
Q ss_pred HHHhhcc
Q 039154 148 LFHIAYP 154 (211)
Q Consensus 148 ~l~~l~~ 154 (211)
.+..++.
T Consensus 334 GL~~lG~ 340 (343)
T cd08050 334 GLSALGP 340 (343)
T ss_pred HHHHhCc
Confidence 8887754
No 141
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=0.12 Score=47.76 Aligned_cols=58 Identities=19% Similarity=0.116 Sum_probs=44.2
Q ss_pred HhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154 132 RLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 132 ~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
....=.+..||.++...+.+++ .+.+ ....+...+.+.+.|++-+||-.|...+..+-
T Consensus 473 NRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 473 NRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3333355679999988888887 3333 45677888889999999999999998887665
No 142
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=95.22 E-value=0.76 Score=38.93 Aligned_cols=46 Identities=24% Similarity=0.200 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHH
Q 039154 162 TELRSIYTQLCQDD--MPMVRRSAASNLRKFAATVEPAHLKTDIMSIFE 208 (211)
Q Consensus 162 ~~l~~~~~~L~~D~--~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~ 208 (211)
..+...|+.++-.+ .+.||+.|...+.++...-+.. +...++--++
T Consensus 203 ~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~ 250 (339)
T PF12074_consen 203 SAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLW 250 (339)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHH
Confidence 56777888888888 8999999999999988876653 4444444443
No 143
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=95.13 E-value=1.1 Score=34.47 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=51.5
Q ss_pred HHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHH
Q 039154 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDI 203 (211)
Q Consensus 128 p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~l 203 (211)
+.+..+..+++.-+|.++...+...+.. ....+.++.....+..|++.-||++++-.|..+++. .|+.+...+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~--~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK--ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 7788888877744444444443333332 224678899999999999999999999999999998 555544443
No 144
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.11 E-value=0.3 Score=45.98 Aligned_cols=143 Identities=14% Similarity=0.046 Sum_probs=101.0
Q ss_pred hhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch--hhHHHHHHHHHHHHHHhhcC-----
Q 039154 46 PKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE--ETCMRDKAVESLCRIGSQMR----- 118 (211)
Q Consensus 46 ~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~l~----- 118 (211)
++.++..+...++.+++||..+..++.++...-| +.. .|.+.+.+. .-..|..|.-.|.++.+...
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~---f~~----aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E 75 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELTEG---FGV----ALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFE 75 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccchH---HHH----HHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHh
Confidence 4556666677788888898888888888765333 222 233333333 44567777777777776642
Q ss_pred --------hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 119 --------ESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 119 --------~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
.+..+.++-..+.++.-|++..+|.++++.+..++..-=++.|.+++|...+++.+....=--.+.+.|.++
T Consensus 76 ~fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el 155 (1005)
T KOG2274|consen 76 AFRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAEL 155 (1005)
T ss_pred hccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHH
Confidence 245566677777777779999999999999999988776778999999999999976655555666667666
Q ss_pred HhhhC
Q 039154 191 AATVE 195 (211)
Q Consensus 191 ~~~~~ 195 (211)
..-+.
T Consensus 156 ~~ev~ 160 (1005)
T KOG2274|consen 156 SDEVD 160 (1005)
T ss_pred HHHHH
Confidence 65543
No 145
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.11 E-value=0.053 Score=45.81 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=112.7
Q ss_pred chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccc-----cchHHhhhccchhhHHHHHHHHHHHHHHhhc
Q 039154 44 RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV-----LLPPLETLCTVEETCMRDKAVESLCRIGSQM 117 (211)
Q Consensus 44 ~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~-----llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l 117 (211)
.+...-+|++.+ +...+++|..-++=++..+.. |+.+..+. +.+-|.+++..++..|..-|+.+++.+..--
T Consensus 239 ~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD--g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSD--GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS 316 (526)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc--CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence 466788999999 777788998888888888776 33332222 3455889999999999888888888876554
Q ss_pred ChhH--H-HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 118 RESD--L-VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 118 ~~~~--~-~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
+.++ + .--.++.+..+.+++..++|+-+|--+..+...-..+ ....|.|.++.|+.--+...|+.|+=++.+.
T Consensus 317 D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa 396 (526)
T COG5064 317 DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA 396 (526)
T ss_pred ccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4332 1 1226788888889988899999999888886665554 3568999999999999999999998887765
Q ss_pred Hhh
Q 039154 191 AAT 193 (211)
Q Consensus 191 ~~~ 193 (211)
...
T Consensus 397 tsg 399 (526)
T COG5064 397 TSG 399 (526)
T ss_pred hcc
Confidence 543
No 146
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.08 E-value=0.38 Score=32.86 Aligned_cols=78 Identities=10% Similarity=0.052 Sum_probs=61.4
Q ss_pred HHHhhcCCCchHHHhHHhHHHhhccCCC-hH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154 130 VKRLAAGEWFTARVSACGLFHIAYPSAP-DI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF 207 (211)
Q Consensus 130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~-~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~ 207 (211)
.....+|+...+|......+..+...-. .. ....++.+|.+.++|+++=|=-+|.+.|..++...+. .+...++-.|
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-~vl~~L~~~y 86 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-EVLPILLDEY 86 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-HHHHHHHHHH
Confidence 4445578888899998888888877666 33 5678999999999999999999999999999998754 4455555554
Q ss_pred H
Q 039154 208 E 208 (211)
Q Consensus 208 ~ 208 (211)
.
T Consensus 87 ~ 87 (92)
T PF10363_consen 87 A 87 (92)
T ss_pred h
Confidence 3
No 147
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.06 E-value=0.49 Score=43.68 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=85.7
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcChhH--------HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESD--------LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI- 159 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~--------~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~- 159 (211)
..+.+|+..+....|...++.++.+...+-.+. .-+.++..+..-..|.++-+|+-+...+.+++..-++-
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 456778899999999999999999988875532 22346666777778999999999999998888765544
Q ss_pred -HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 160 -LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 160 -~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
-+.++......-++|.+..||+.|.+-+.++.-..+
T Consensus 382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 467788888999999999999999998887765544
No 148
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.06 E-value=0.42 Score=39.54 Aligned_cols=129 Identities=14% Similarity=0.181 Sum_probs=83.0
Q ss_pred cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhH---HHH-----hhHHHHHHhhc--------CCCchHHHh
Q 039154 81 VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESD---LVD-----WFIPLVKRLAA--------GEWFTARVS 144 (211)
Q Consensus 81 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~---~~~-----~l~p~i~~l~~--------d~~~~vR~~ 144 (211)
+..+..++|.+-.++.|.+..+|..++..|..+.+..+... +.. .+.+.+..... +++..+=..
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 34677889999999999999999999999999999988766 432 24444444433 555444333
Q ss_pred HHhHHHhhccC---C-ChH----HHHHHHH-HHHHhcCCC---CHHHHHHHHHhhHHHHhhhCchhhH--HHHHHHHHh
Q 039154 145 ACGLFHIAYPS---A-PDI----LKTELRS-IYTQLCQDD---MPMVRRSAASNLRKFAATVEPAHLK--TDIMSIFED 209 (211)
Q Consensus 145 ~a~~l~~l~~~---~-~~~----~~~~l~~-~~~~L~~D~---~~~VR~aaa~~l~~~~~~~~~~~~~--~~llp~~~~ 209 (211)
+-..+-.++.. - +.. ..+.+.. ++-.+..=. .+.+|...++.+..+++.+|...++ +.++|.+..
T Consensus 194 ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~ 272 (282)
T PF10521_consen 194 AYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQ 272 (282)
T ss_pred HHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 33333333222 1 111 2233333 333333333 4999999999999999999986443 457776643
No 149
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=94.87 E-value=0.33 Score=37.49 Aligned_cols=125 Identities=10% Similarity=0.008 Sum_probs=84.4
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCCCchHHHhHHhHHHhh---ccCCC
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGEWFTARVSACGLFHIA---YPSAP 157 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~~~~vR~~~a~~l~~l---~~~~~ 157 (211)
-+++||++.+-+...+.--|..|...+.++.+.-+.+.+. ..+++-+++..+..+-.|..++...+..+ .+.+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 3567888887777777777888888888888884444332 33444555556667778888888888888 78888
Q ss_pred hH---HHHHHHHHHHHhcC-----------CCCHHHHHHHHHhhHHHHhhhCchhh--HHHHHHHHH
Q 039154 158 DI---LKTELRSIYTQLCQ-----------DDMPMVRRSAASNLRKFAATVEPAHL--KTDIMSIFE 208 (211)
Q Consensus 158 ~~---~~~~l~~~~~~L~~-----------D~~~~VR~aaa~~l~~~~~~~~~~~~--~~~llp~~~ 208 (211)
+. +..+++|.+--+.+ .....++......|..+-..-|++.+ ..+.+|.++
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nIKy~IPTYe 182 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINIKYMIPTYE 182 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHHHHhCCCCC
Confidence 77 56667776553222 23466777777778777777777743 344555543
No 150
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.84 E-value=0.3 Score=46.97 Aligned_cols=132 Identities=15% Similarity=0.119 Sum_probs=93.0
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh----hHHHHhhHHHHH
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE----SDLVDWFIPLVK 131 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~----~~~~~~l~p~i~ 131 (211)
-.|-.|++|..+.+.||...+....--.....|..+-=.+.|.+..||..++++|..+.++-.. +.+.+-+=..+.
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV 375 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV 375 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 4799999999999999999987765545555566666678999999999999999999988211 223333334445
Q ss_pred Hhh-cCCCchHHHhHHhHHHhh--ccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154 132 RLA-AGEWFTARVSACGLFHIA--YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 132 ~l~-~d~~~~vR~~~a~~l~~l--~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
.++ .|.+..||......+-.. ...+.. +++.+. ..|.-|..+.||+++...+..-.
T Consensus 376 eMadrd~~~~Vrav~L~~~~~~~~~g~L~d---~di~~V-y~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 376 EMADRDRNVSVRAVGLVLCLLLSSSGLLSD---KDILIV-YSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHhhhcchhHHHHHHHHHHHHhcccccCh---hHHHHH-HHHHhccCcchHHHHHHHHHHHh
Confidence 566 566677777655444333 223332 355555 67889999999999998876543
No 151
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.74 E-value=0.17 Score=39.20 Aligned_cols=126 Identities=15% Similarity=0.146 Sum_probs=78.5
Q ss_pred chhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH----
Q 039154 48 ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL---- 122 (211)
Q Consensus 48 ~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~---- 122 (211)
.-++.+.+ +.+.+..||..+.+-+..+.+ - |=.+=...+|.+..|..|++..+|..|...+..+.++.+.=..
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~-q-GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~ 85 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILR-Q-GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYS 85 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-c-CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34555666 889999999999999988777 2 2222335678899999999999999999999999998754211
Q ss_pred --HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC--hHHHHHHHHHHHHhcCCC
Q 039154 123 --VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP--DILKTELRSIYTQLCQDD 175 (211)
Q Consensus 123 --~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~--~~~~~~l~~~~~~L~~D~ 175 (211)
-..-+.+-.++..|..-..+......+..++..+. ...+.+|+..+.+...+.
T Consensus 86 ~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~ 142 (187)
T PF12830_consen 86 EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFD 142 (187)
T ss_pred HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 12233344445555443221113333344444333 224555555555555543
No 152
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.83 Score=39.33 Aligned_cols=115 Identities=11% Similarity=0.070 Sum_probs=89.3
Q ss_pred hhccchhhHHHHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHH
Q 039154 93 TLCTVEETCMRDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELR 165 (211)
Q Consensus 93 ~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~ 165 (211)
..++..+..||..|...+..+...- +.... ..+++.+..+..|++..||...-..+-.+....+++ ....++
T Consensus 65 ~qlkHhNakvRkdal~glkd~l~s~-p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~ 143 (393)
T KOG2149|consen 65 SQLKHHNAKVRKDALNGLKDLLKSH-PAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLM 143 (393)
T ss_pred hhhcCchHhhhHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHH
Confidence 3457888999999999999999884 44333 346677777889999999999888877755544443 567788
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHH--HHHHHH
Q 039154 166 SIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTD--IMSIFE 208 (211)
Q Consensus 166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~--llp~~~ 208 (211)
++....+....++||.-+..-+.-++..++|.+.... +++.|.
T Consensus 144 ~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~ 188 (393)
T KOG2149|consen 144 PYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFK 188 (393)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999998654332 444443
No 153
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.73 E-value=0.28 Score=43.78 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=94.1
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchh-hHHHHHHHHHHHHHHhh---c------ChhHHHHh
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE-TCMRDKAVESLCRIGSQ---M------RESDLVDW 125 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~---l------~~~~~~~~ 125 (211)
|...++.-|..|.+.|.. +.-.+.++|.|..++.+.- ..|-.....-|..+.+. + --+..-..
T Consensus 216 ~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~ 288 (576)
T KOG2549|consen 216 CTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQ 288 (576)
T ss_pred HhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHH
Confidence 667788888888777765 3345678888888876652 23222333333333332 2 22455566
Q ss_pred hHHHHHH------hhc----CCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCC--CHHHHHHHHHhhHHH
Q 039154 126 FIPLVKR------LAA----GEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDD--MPMVRRSAASNLRKF 190 (211)
Q Consensus 126 l~p~i~~------l~~----d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~--~~~VR~aaa~~l~~~ 190 (211)
++|.+.. |+. |..|..|-.+|..+..++..++.. .+..+...+.+-+.|+ .+.-+..+...|..+
T Consensus 289 L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 289 LVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence 7777744 333 566999999999999999999987 4567888888888887 478888888888666
Q ss_pred HhhhCchhhHHHHHHH
Q 039154 191 AATVEPAHLKTDIMSI 206 (211)
Q Consensus 191 ~~~~~~~~~~~~llp~ 206 (211)
+. +.+..-|+|-
T Consensus 369 g~----~~I~~~ilp~ 380 (576)
T KOG2549|consen 369 GH----EVIRTVILPN 380 (576)
T ss_pred hh----hhhhheeccc
Confidence 65 4444455543
No 154
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=2.4 Score=43.28 Aligned_cols=198 Identities=15% Similarity=0.084 Sum_probs=129.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccCccccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
+..+...+-+.||..|-.+...+..+|...|...+-..+..++.. +.+ .++.-|..-.-.+|.+-+++|+--..+++.
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 445566688999999999999999999999988766677766555 544 455666777888899888888655555555
Q ss_pred h---HHhhhccchhh-HHHHHHHHHHHHHHhhcChhH---HHHhhHHHHHHhhcCCCc--hHHHhHHhHHH------hhc
Q 039154 89 P---PLETLCTVEET-CMRDKAVESLCRIGSQMRESD---LVDWFIPLVKRLAAGEWF--TARVSACGLFH------IAY 153 (211)
Q Consensus 89 p---~l~~l~~d~~~-~VR~~a~~~l~~l~~~l~~~~---~~~~l~p~i~~l~~d~~~--~vR~~~a~~l~------~l~ 153 (211)
. ++..+.+|.+. .|+.-++.++.-+...-++-. +..++--...-+..++.. .|+.+.-..+. ++.
T Consensus 958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~ali 1037 (2067)
T KOG1822|consen 958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALI 1037 (2067)
T ss_pred cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHH
Confidence 5 77888888875 999999999999988877743 223333333444455443 44444433333 333
Q ss_pred cCCChH------------HHHHHHHHHHHhcCCC-CHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHh
Q 039154 154 PSAPDI------------LKTELRSIYTQLCQDD-MPMVRRSAASNLRKFAATVEPAHLKTDIMSIFED 209 (211)
Q Consensus 154 ~~~~~~------------~~~~l~~~~~~L~~D~-~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~ 209 (211)
..+|++ .+...+ .-..++.++ ++.|-.++...+.++--.-+...-.+.++|.++.
T Consensus 1038 ttlgpeL~~N~~~d~t~~~rts~l-a~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~ 1105 (2067)
T KOG1822|consen 1038 TTLGPELGPNGDKDSTSTLRTSCL-AACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCS 1105 (2067)
T ss_pred HhcccccCCCCcccchhHHHHHHH-HHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHH
Confidence 333332 112122 222344444 7888999988888887655555445566666554
No 155
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.33 E-value=0.87 Score=43.87 Aligned_cols=148 Identities=22% Similarity=0.155 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHHHHHh--CCcc-hhhchhhhhhh-cCCC-hHHHHHHHHHHHhccccc------cCccccccccchH
Q 039154 22 DIQLRLNSIRRLSTIARAL--GEER-TPKELIPFLSA-NNDD-DDEVLLAMAEELGVFIPY------VGGVEHAHVLLPP 90 (211)
Q Consensus 22 ~~~~R~~a~~~l~~ia~~l--g~~~-~~~~L~p~l~~-~~D~-~~~VR~~~a~~L~~l~~~------ig~~~~~~~llp~ 90 (211)
++++|..|+--|..|..-. |.+. +...|+.+-.+ ++|+ .+-.|.=++-.||.+=+. .|..+... .-
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah---ek 646 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH---EK 646 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH---HH
Confidence 3689999988888877543 3322 44556666666 7885 788999999999876553 23332221 12
Q ss_pred HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH--HHHHHH---
Q 039154 91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELR--- 165 (211)
Q Consensus 91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~--- 165 (211)
+-.+++|+-++||.+|+-+|+.+......+ +.-++...+-... +..+ ..+++.
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~------------------fde~~~~~~~~~~----l~~~~~~~E~~i~~~ 704 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDN------------------FDEQTLVVEEEID----LDDERTSIEDLIIKG 704 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccc------------------cchhhhhhhhhhc----chhhhhhHHHHHHhh
Confidence 445668899999999999999988875332 1111111100000 1111 012222
Q ss_pred -HHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 166 -SIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 166 -~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
-....+.+|-+|.||+..+..|..++.-.
T Consensus 705 ~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 705 LMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 25678899999999999999998876543
No 156
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=94.32 E-value=0.35 Score=37.36 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=60.2
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH---HhhhCc
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKF---AATVEP 196 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~---~~~~~~ 196 (211)
++++|.+..=........|..+...+..+...-+.+ ...++++.+.+.++-.+++|.+++.+.|..+ ...+|+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 567777765445555566777777777776663333 5788999999999999999999999999999 666675
Q ss_pred hhhHHHHHHHHHh
Q 039154 197 AHLKTDIMSIFED 209 (211)
Q Consensus 197 ~~~~~~llp~~~~ 209 (211)
.|+|++..
T Consensus 117 -----aLvPyyrq 124 (183)
T PF10274_consen 117 -----ALVPYYRQ 124 (183)
T ss_pred -----HHHHHHHH
Confidence 45555544
No 157
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.15 E-value=0.12 Score=29.37 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
...+|.+++|++++++.||+.|+..|+++++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3468999999999999999999999998863
No 158
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.13 E-value=0.15 Score=34.82 Aligned_cols=64 Identities=16% Similarity=0.045 Sum_probs=42.3
Q ss_pred cCCChHHHHHHHHHHHhccccccC-ccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVG-GVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE 119 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig-~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~ 119 (211)
++|+.+-||..+...|..+.+.-. .......++.++...++|++..|=..|++.+..++...+.
T Consensus 12 L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 12 LNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred ccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 566666677666666666655333 2234456677777777777777777777777777777654
No 159
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.07 E-value=0.49 Score=46.95 Aligned_cols=107 Identities=17% Similarity=0.045 Sum_probs=81.0
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHH
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI 167 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~ 167 (211)
+..+...+.-+...+|-.|+++|..+.+.=+.=-....+.-.+.+-..|.+..||.++.++++.+.-.... ...+.+..
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e-~~~qyY~~ 896 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE-LIFQYYDQ 896 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH-HHHHHHHH
Confidence 33444455655688999999999999988554334445555667777899999999999999987655432 34556666
Q ss_pred HHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 168 YTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 168 ~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
...=..|+...||+-+.+-+.+++...+
T Consensus 897 i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 897 IIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 6777889999999999999999887654
No 160
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.07 E-value=0.46 Score=43.04 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=57.7
Q ss_pred hccchhhHHHHHHHHHHHHHHhhcCh--hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHH-
Q 039154 94 LCTVEETCMRDKAVESLCRIGSQMRE--SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ- 170 (211)
Q Consensus 94 l~~d~~~~VR~~a~~~l~~l~~~l~~--~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~- 170 (211)
.....+..||..+...+..+....+. +.+.+.++..+.+-.=|..-.||.-+...+..+-+.-+.+ .......+..
T Consensus 99 g~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-en~~~n~l~~~ 177 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-ENRIVNLLKDI 177 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHH
Confidence 33444567777777777777777766 6666666655555556666677777777776665444433 2223333333
Q ss_pred hcCCCCHHHHHHHHHhh
Q 039154 171 LCQDDMPMVRRSAASNL 187 (211)
Q Consensus 171 L~~D~~~~VR~aaa~~l 187 (211)
+-+|++.+||++|..++
T Consensus 178 vqnDPS~EVRr~allni 194 (885)
T COG5218 178 VQNDPSDEVRRLALLNI 194 (885)
T ss_pred HhcCcHHHHHHHHHHHe
Confidence 34577778887777665
No 161
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.02 E-value=1.2 Score=43.74 Aligned_cols=138 Identities=14% Similarity=0.035 Sum_probs=90.3
Q ss_pred cCCChHHHHHHHHHHHhccccccCcccc---cc---------ccchHHhhhccchh-hHHHHHHHHHHHHHHhhcChhHH
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEH---AH---------VLLPPLETLCTVEE-TCMRDKAVESLCRIGSQMRESDL 122 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~---~~---------~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l~~~~~ 122 (211)
.-+..+++|+.++-.+-.+.+.-|+.-. .+ ..+.-+..+..|+- .-||++++..|..+.+.+....+
T Consensus 86 ~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~ 165 (1549)
T KOG0392|consen 86 LFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLI 165 (1549)
T ss_pred hcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhh
Confidence 5566667777666666555553332110 01 11222334445443 46899999999999998877664
Q ss_pred HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh---HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 123 VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 123 ~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~---~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
.. .+.++.+++..+.|++|..-...+......... ......++.++.-++|++-.||..|++.+..++...
T Consensus 166 ~~-~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 166 KE-TLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HH-HHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence 43 456677788888998876544443322221111 245677889999999999999999999999999888
No 162
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=93.97 E-value=0.5 Score=44.06 Aligned_cols=175 Identities=15% Similarity=0.097 Sum_probs=105.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC--ccccccc
Q 039154 12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG--GVEHAHV 86 (211)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig--~~~~~~~ 86 (211)
..+...++.++.-.|. ++..|..+|.....+ -.+..+++.+.+ +..++.++...+..-|..++-+-. ..-....
T Consensus 253 kk~~~l~~kQeqLlrv-~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g 331 (708)
T PF05804_consen 253 KKLQTLIRKQEQLLRV-AFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG 331 (708)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 3444555566666663 455666766444333 255677788888 777788888877777766653211 1223456
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHHhhcC--hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HH
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMR--ESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LK 161 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~--~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~ 161 (211)
++|.|..++..++...+..++..|.++...-. ...+..-++|.+..+.+|+.+ |..+...+..++..-... ..
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~--~~val~iLy~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNF--REVALKILYNLSMDDEARSMFAY 409 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCch--HHHHHHHHHHhccCHhhHHHHhh
Confidence 78888888888888888888888888765432 234445578888888888764 455666666665432211 22
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhhHH
Q 039154 162 TELRSIYTQLCQ-DDMPMVRRSAASNLRK 189 (211)
Q Consensus 162 ~~l~~~~~~L~~-D~~~~VR~aaa~~l~~ 189 (211)
.+-+|...+++- -+...|...++.-+.+
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iN 438 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLIN 438 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHH
Confidence 345566555433 3445555544333333
No 163
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=93.94 E-value=0.45 Score=41.04 Aligned_cols=87 Identities=11% Similarity=0.037 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHhhcCh---------------hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH
Q 039154 99 ETCMRDKAVESLCRIGSQMRE---------------SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE 163 (211)
Q Consensus 99 ~~~VR~~a~~~l~~l~~~l~~---------------~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~ 163 (211)
+|.-+..|+.-+..++.+... +.+.++++|-+. -..+...-.|.-|++-+..+...++++....
T Consensus 268 ~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~ 346 (370)
T PF08506_consen 268 NWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ 346 (370)
T ss_dssp -HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH
Confidence 445556666666666665521 223455556555 1122223356666677777766776666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHh
Q 039154 164 LRSIYTQLCQDDMPMVRRSAASN 186 (211)
Q Consensus 164 l~~~~~~L~~D~~~~VR~aaa~~ 186 (211)
++|.+.+++++++.-|+.=||..
T Consensus 347 ~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 347 IFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhhhhh
Confidence 77777777777777777766654
No 164
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=93.86 E-value=1.1 Score=38.71 Aligned_cols=138 Identities=13% Similarity=0.160 Sum_probs=82.5
Q ss_pred chHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cC------CChHHHHHHHHHHHhcccccc--
Q 039154 9 YPIAVLTDELK-NDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NN------DDDDEVLLAMAEELGVFIPYV-- 78 (211)
Q Consensus 9 ~pl~~l~~~l~-s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~------D~~~~VR~~~a~~L~~l~~~i-- 78 (211)
+|.+-+-..+. +|....|.+|+.-+..+++..+..- ..-+..++.+ ++ ..++.-+-+|..-++.++...
T Consensus 210 dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t 288 (370)
T PF08506_consen 210 DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGST 288 (370)
T ss_dssp SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--
T ss_pred CHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcc
Confidence 35555555555 4446668888888888887766432 2222233333 22 234444444444445544422
Q ss_pred ---Cc----------cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhH
Q 039154 79 ---GG----------VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSA 145 (211)
Q Consensus 79 ---g~----------~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~ 145 (211)
|. +-..++++|-|. --.+..+-+|..|++-+..+-..++++... .++|.+.+...+++.-|+..+
T Consensus 289 ~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~-~~~~~l~~~L~~~~~vv~tyA 366 (370)
T PF08506_consen 289 TKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLL-QIFPLLVNHLQSSSYVVHTYA 366 (370)
T ss_dssp BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHH-HHHHHHHHHTTSS-HHHHHHH
T ss_pred ccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHhCCCCcchhhhh
Confidence 11 113456677776 223446789999999999999999887654 488999999999999999999
Q ss_pred HhHH
Q 039154 146 CGLF 149 (211)
Q Consensus 146 a~~l 149 (211)
|..+
T Consensus 367 A~~i 370 (370)
T PF08506_consen 367 AIAI 370 (370)
T ss_dssp HHHH
T ss_pred hhhC
Confidence 8753
No 165
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.74 E-value=0.71 Score=39.75 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=88.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchh---hchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc---c
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTP---KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE---H 83 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~---~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~---~ 83 (211)
+..++..++.-|..+|..|...+-..-..- +.... ..+++-+.+ ..|++..||.+.-+-+..+....+.+. .
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~-p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSH-PAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 778899999999999999999998776652 22223 344455555 789999999999888887666555444 2
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh--hHHHHHHh
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW--FIPLVKRL 133 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~--l~p~i~~l 133 (211)
...+.|.+......--+.||.-+.+-|.-++...++....+. +++.+...
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~ 190 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDV 190 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 334556666677777899999999999999999988654322 44444443
No 166
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=93.68 E-value=1.7 Score=40.65 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC--Ccchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC--cccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALG--EERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG--GVEHAH 85 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg--~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig--~~~~~~ 85 (211)
+..|++-|++++.+....++.-|.+++-.-. ..-....++|-+.. +..++.+++..+...|.+++-.-+ ..-...
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~ 371 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSL 371 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHC
Confidence 4457788899999998888777777651100 01134456666666 566677788888888887765211 122234
Q ss_pred ccchHHhhhccchhhHHHHHHHHHHHHHHh
Q 039154 86 VLLPPLETLCTVEETCMRDKAVESLCRIGS 115 (211)
Q Consensus 86 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~ 115 (211)
-++|.+..+++|++ .|..+.+.|..++.
T Consensus 372 GlIPkLv~LL~d~~--~~~val~iLy~LS~ 399 (708)
T PF05804_consen 372 GLIPKLVELLKDPN--FREVALKILYNLSM 399 (708)
T ss_pred CCcHHHHHHhCCCc--hHHHHHHHHHHhcc
Confidence 46788888887653 44556666665554
No 167
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=1.1 Score=42.73 Aligned_cols=130 Identities=18% Similarity=0.148 Sum_probs=87.1
Q ss_pred cccccccchHHhhhcc------chhhHH--HHHHHHHHHHHHhhcCh-----hHHHHhhHHHHHHhhcCCCchHHHhHHh
Q 039154 81 VEHAHVLLPPLETLCT------VEETCM--RDKAVESLCRIGSQMRE-----SDLVDWFIPLVKRLAAGEWFTARVSACG 147 (211)
Q Consensus 81 ~~~~~~llp~l~~l~~------d~~~~V--R~~a~~~l~~l~~~l~~-----~~~~~~l~p~i~~l~~d~~~~vR~~~a~ 147 (211)
+++...+++.+...+. .++..- .+.|...++.++..+.+ +..+..+.+.+.=..+++.=-.|.-+|.
T Consensus 405 ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~ 484 (1010)
T KOG1991|consen 405 KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACW 484 (1010)
T ss_pred hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHH
Confidence 4455555665555555 444444 46788888888877654 3444555555555556777668888999
Q ss_pred HHHhhc-cCCChH-HHHHHHHHHHHhcC-CCCHHHHHHHHHhhHHHHhhhCc--hhhHHHHHHHHHhh
Q 039154 148 LFHIAY-PSAPDI-LKTELRSIYTQLCQ-DDMPMVRRSAASNLRKFAATVEP--AHLKTDIMSIFEDL 210 (211)
Q Consensus 148 ~l~~l~-~~~~~~-~~~~l~~~~~~L~~-D~~~~VR~aaa~~l~~~~~~~~~--~~~~~~llp~~~~L 210 (211)
.++.++ ..+..+ ...+.+..-.+.+. |++--||-.||-+|.-+...... +.+...+-|+.++|
T Consensus 485 vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~l 552 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQEL 552 (1010)
T ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHH
Confidence 999998 556665 44555555555554 99999999999999999988763 34666666666554
No 168
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=93.53 E-value=0.36 Score=37.27 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=57.9
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~ 168 (211)
+.+.....+++.-+|..|...+...... +...+.+++.+..+.+|+.+.||++++-.+..++....+...+.+....
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~~ 184 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKNG 184 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 7788888888887777777777666555 3345778888888888888889999998888888886555444444443
Q ss_pred HH
Q 039154 169 TQ 170 (211)
Q Consensus 169 ~~ 170 (211)
..
T Consensus 185 ~~ 186 (197)
T cd06561 185 LS 186 (197)
T ss_pred Hh
Confidence 33
No 169
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=1.8 Score=38.93 Aligned_cols=132 Identities=14% Similarity=0.051 Sum_probs=92.9
Q ss_pred CChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcC-
Q 039154 58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAG- 136 (211)
Q Consensus 58 D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d- 136 (211)
++--+-|..+++.+.+.+-.+|+.+..+...-.+.+ ....|..=++++..+..+++.++++. +.++|-+.++...
T Consensus 363 ~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~~i~pevl~~i~nl 438 (559)
T KOG2081|consen 363 SEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--NTIMPEVLKLICNL 438 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--cchHHHHHHHHhCC
Confidence 344569999999999999999987765554433333 35568899999999999999999886 6667766665432
Q ss_pred -CCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 137 -EWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 137 -~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
....+|+..+..++.+.+-+... ...-...+.....++.. .-.+++.+++.+...+-
T Consensus 439 p~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~ 498 (559)
T KOG2081|consen 439 PEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACR 498 (559)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHH
Confidence 33459999999999998877665 33334444455555554 55566666666666553
No 170
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=93.34 E-value=5.8 Score=38.37 Aligned_cols=171 Identities=11% Similarity=0.094 Sum_probs=117.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHh-ccccc--------------------
Q 039154 20 NDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELG-VFIPY-------------------- 77 (211)
Q Consensus 20 s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~-~l~~~-------------------- 77 (211)
+.-+.+|..|+..+.++-...|..... .++-...+ +.|+--.++.++-..+- ..+..
T Consensus 483 DkaaavR~~al~s~tk~l~l~~~~~~~-sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~~~~~ii~d~ 561 (1529)
T KOG0413|consen 483 DKAAAVRLHALNSLTKILQLQSHREAF-SILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLLDEQQIIQDF 561 (1529)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccchH-HHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcCcchhhhhhc
Confidence 667889999999999888777764443 33433333 66776667765543331 11110
Q ss_pred ----cC-c-cccccccchHHhhhcc-chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHH
Q 039154 78 ----VG-G-VEHAHVLLPPLETLCT-VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFH 150 (211)
Q Consensus 78 ----ig-~-~~~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~ 150 (211)
.| + ..+...++..+..-++ |+...||.+|...+.......+.+......+-++..+|.|+...||+..|..|.
T Consensus 562 ~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Slt 641 (1529)
T KOG0413|consen 562 KLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLT 641 (1529)
T ss_pred chhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 00 1 1123344555444444 888899999999999999998888877777888999999999999999999998
Q ss_pred hhccCCCh--HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154 151 IAYPSAPD--ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 151 ~l~~~~~~--~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
++-..-+. +..+.|+-.++..++|.+..|-.-+..-+.++.
T Consensus 642 el~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 642 ELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 87432211 245667777799999999988877766554443
No 171
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.16 E-value=1.6 Score=36.50 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=72.3
Q ss_pred hccchhhHHHHHHHHHHHHHHhhcChhHHHH---hhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHH
Q 039154 94 LCTVEETCMRDKAVESLCRIGSQMRESDLVD---WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 170 (211)
Q Consensus 94 l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~---~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~ 170 (211)
.+.+++|.+...+++.+..+...-+ +...+ .++..+.+-+++..-.|-.++|-.+..++...+......+-.+...
T Consensus 96 ~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~ 174 (334)
T KOG2933|consen 96 KLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQ 174 (334)
T ss_pred HhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466678888888888877776655 33222 2333444445566666666777777777777776633333333333
Q ss_pred h---cCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHH
Q 039154 171 L---CQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFE 208 (211)
Q Consensus 171 L---~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~ 208 (211)
| ..++..-||..|-.+|..++....|.-+...|+|+.+
T Consensus 175 Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~ 215 (334)
T KOG2933|consen 175 LLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQ 215 (334)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHh
Confidence 3 3344466788888888888888888877788887765
No 172
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=93.03 E-value=0.17 Score=44.65 Aligned_cols=101 Identities=14% Similarity=0.091 Sum_probs=69.3
Q ss_pred hccchhhHHHHHHHHHHHHHHhhcCh-h------HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh-----HHH
Q 039154 94 LCTVEETCMRDKAVESLCRIGSQMRE-S------DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-----ILK 161 (211)
Q Consensus 94 l~~d~~~~VR~~a~~~l~~l~~~l~~-~------~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~-----~~~ 161 (211)
.+.-+++.||..|+.+|+++.+.+++ + .....+...+-.-.....+.||.++|+.+++++..-.- +..
T Consensus 492 ~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA 571 (728)
T KOG4535|consen 492 EASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWA 571 (728)
T ss_pred HhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCch
Confidence 34445689999999999999888763 1 11222222222222334578999999999999765322 145
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHhhHHHHhhh
Q 039154 162 TELRSIYTQLCQDDM-PMVRRSAASNLRKFAATV 194 (211)
Q Consensus 162 ~~l~~~~~~L~~D~~-~~VR~aaa~~l~~~~~~~ 194 (211)
..+++.+..|..|-. ..||..||..|..-++-.
T Consensus 572 ~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re 605 (728)
T KOG4535|consen 572 SQAFNALTSLVTSCKNFKVRIRAAAALSVPGKRE 605 (728)
T ss_pred HHHHHHHHHHHHHhccceEeehhhhhhcCCCCcc
Confidence 788999999988766 899999998886555443
No 173
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=93.01 E-value=1.2 Score=43.76 Aligned_cols=165 Identities=18% Similarity=0.074 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHhCCcchhh------chhhhhhhcCCCh------HHHHHHHHHHHhccccccCccccccccchHH
Q 039154 24 QLRLNSIRRLSTIARALGEERTPK------ELIPFLSANNDDD------DEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91 (211)
Q Consensus 24 ~~R~~a~~~l~~ia~~lg~~~~~~------~L~p~l~~~~D~~------~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l 91 (211)
-.|.-|-.-|..+++.+|+..... -|+--+.+..|.+ .+|-.+++--.+....- .-..+|-+
T Consensus 748 ~errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~------~~~~l~~l 821 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP------LGSLLPRL 821 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh------hhhhhhHH
Confidence 446677777888888898864321 1121122212222 33444444333332221 12456777
Q ss_pred hhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchH-HHhHHhHHHhhccCCChH---HHHHHHHH
Q 039154 92 ETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTA-RVSACGLFHIAYPSAPDI---LKTELRSI 167 (211)
Q Consensus 92 ~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~v-R~~~a~~l~~l~~~~~~~---~~~~l~~~ 167 (211)
..+.......+|.+|+.++..+.+....+.. ..++..+.-+.+|-.--+ |..+-..+.-+....... +..-|++.
T Consensus 822 ~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m-~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~p 900 (1549)
T KOG0392|consen 822 FFFVRSIHIAVRYAAARCIGTMFKSATRETM-ATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVP 900 (1549)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhh
Confidence 7888888999999999999999888766643 334444444445543334 445555566555554443 55678899
Q ss_pred HHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 168 YTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 168 ~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
++..+.|+.-.||.++-+.+..+...++
T Consensus 901 llr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 901 LLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred hhcccccchHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999998875
No 174
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=7.8 Score=36.16 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=56.2
Q ss_pred HHHhhcCCCchHHHhHHhHHHhhccCCC-hH-HHHHHHHHHHHhcC-CCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHH
Q 039154 130 VKRLAAGEWFTARVSACGLFHIAYPSAP-DI-LKTELRSIYTQLCQ-DDMPMVRRSAASNLRKFAATVEPAHLKTDIMSI 206 (211)
Q Consensus 130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~-~~-~~~~l~~~~~~L~~-D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~ 206 (211)
+.++..+..-..|+-+.+.+..++..-. -+ .+.+ ....+..++ +.+..||+-+..-|..|++.=....+.++++.+
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqY 412 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQY 412 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence 3444445555677777777766655422 22 4445 555566666 999999999999999999988888888888888
Q ss_pred HHh
Q 039154 207 FED 209 (211)
Q Consensus 207 ~~~ 209 (211)
+..
T Consensus 413 L~t 415 (938)
T KOG1077|consen 413 LET 415 (938)
T ss_pred Hhh
Confidence 753
No 175
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=92.64 E-value=0.98 Score=37.36 Aligned_cols=129 Identities=12% Similarity=0.031 Sum_probs=86.2
Q ss_pred chhhhhhh-cCCChHHHHHHHHHHHhccccccCccc---c-----ccccchHHhhhcc--------chhhHHHHHHHHHH
Q 039154 48 ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE---H-----AHVLLPPLETLCT--------VEETCMRDKAVESL 110 (211)
Q Consensus 48 ~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~---~-----~~~llp~l~~l~~--------d~~~~VR~~a~~~l 110 (211)
.++|.+.. +-|.++++|...+..|..+.+.+.... . .+.+.+.+...+. ++...+=..+..++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 45788888 666789999999999999998776544 1 2233344444444 55666777888888
Q ss_pred HHHHhhcCh---h----HHHHhhHH-HHHHhhcC---CCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCC
Q 039154 111 CRIGSQMRE---S----DLVDWFIP-LVKRLAAG---EWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM 176 (211)
Q Consensus 111 ~~l~~~l~~---~----~~~~~l~p-~i~~l~~d---~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~ 176 (211)
..++..... . ...+.+-. ++..+..- +..++|...+..++.+...+|-. +.+.+++.+.+.++++.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 888776421 1 12222222 22222222 34788899999999999999987 56778888888877764
No 176
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=92.55 E-value=0.24 Score=28.60 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHh
Q 039154 161 KTELRSIYTQLCQDDMPMVRRSAASN 186 (211)
Q Consensus 161 ~~~l~~~~~~L~~D~~~~VR~aaa~~ 186 (211)
.+.+...+.+-+.|+++.||.+|..-
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 45788888999999999999998764
No 177
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=3.7 Score=41.31 Aligned_cols=179 Identities=12% Similarity=0.037 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcchhhchhhhhh-h-cCCChHHHHHHHHHHHhcccc--c-cCccccccccchHHhhhcc
Q 039154 22 DIQLRLNSIRRLSTIARALGEERTPKELIPFLS-A-NNDDDDEVLLAMAEELGVFIP--Y-VGGVEHAHVLLPPLETLCT 96 (211)
Q Consensus 22 ~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~-~-~~D~~~~VR~~~a~~L~~l~~--~-ig~~~~~~~llp~l~~l~~ 96 (211)
+...+.+++-.--.-....|+..++ +++..+. . ..+.++.||.++.+-+..++= . +..+...+.|--++..++.
T Consensus 1501 d~a~~~a~~~~~lm~~~~~~~~l~~-e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~ 1579 (1710)
T KOG1851|consen 1501 DLAKNSALLCHSLMSLSWIGHHLQP-EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLN 1579 (1710)
T ss_pred hHHHHHHHHHHHHHHhhccchhhHH-HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHc
Confidence 4444544443333445566766554 3444444 3 556678899987665543221 1 2245667788889999999
Q ss_pred chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh-hcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhc
Q 039154 97 VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL-AAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLC 172 (211)
Q Consensus 97 d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l-~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~ 172 (211)
|++-+||+.|++.|.-+.+--..+...+..-+..... ++.....-+..+...++++.-.++.. +..+.+..+-...
T Consensus 1580 D~~i~vre~Aa~~Lsgl~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa 1659 (1710)
T KOG1851|consen 1580 DDQIEVREEAAKCLSGLLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFA 1659 (1710)
T ss_pred chHHHHHHHHHHHHHHHHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhc
Confidence 9999999999999998865533332222222222222 22333344556778888887777665 2334444444455
Q ss_pred CCCCHHHHHHHHHhhHHHHhhhCchhhHHH
Q 039154 173 QDDMPMVRRSAASNLRKFAATVEPAHLKTD 202 (211)
Q Consensus 173 ~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~ 202 (211)
+|+ ..+++++-+.+.++-....-+|..++
T Consensus 1660 ~e~-~~i~~tvkktvseFrrth~D~W~~~k 1688 (1710)
T KOG1851|consen 1660 RES-AAIKQTVKKTVSEFRRTHADTWREHK 1688 (1710)
T ss_pred CCc-hHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 666 67899999999998887766665543
No 178
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=92.42 E-value=2 Score=33.54 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=85.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c-CCChHHHHHHH-HHHHhccccccCccccccccch
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-N-NDDDDEVLLAM-AEELGVFIPYVGGVEHAHVLLP 89 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~-~D~~~~VR~~~-a~~L~~l~~~ig~~~~~~~llp 89 (211)
...+..+++..+.|..++..+........ ...++.+.. . .-++..+--.+ ..-++.+.. . .....+
T Consensus 55 l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~----~--~~~~~~ 123 (213)
T PF08713_consen 55 LADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLK----K--HPEALE 123 (213)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHH----H--HGGHHH
T ss_pred HHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHH----h--hHHHHH
Confidence 34445678888888877776654322211 224556665 3 23455544444 333444432 0 156788
Q ss_pred HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154 90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (211)
Q Consensus 90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~ 157 (211)
.+...+++++.-+|..++-.+...... ...+.++..+....+|+.+.||.+++-.|..++..-.
T Consensus 124 ~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 124 LLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 889999999988888888777666655 3346788888888999999999999999999877744
No 179
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.25 E-value=0.38 Score=44.69 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=53.1
Q ss_pred chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHH
Q 039154 44 RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIG 114 (211)
Q Consensus 44 ~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~ 114 (211)
.+.+.-+-++.. ..=++..||.++...|.+|+ .+.+.....+...+...+.|.++.||+.|.-.+..+-
T Consensus 462 ~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 462 PNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 344444555555 66678889999999998887 4556667788888899999999999999888887776
No 180
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.75 E-value=1.4 Score=40.82 Aligned_cols=109 Identities=10% Similarity=0.095 Sum_probs=84.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--------hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc-
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER--------TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG- 80 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--------~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~- 80 (211)
...+.+.|.|+...-|.+.+..+..+...+..+- +-+.|+..+.+ +.|..|.+|.-+.+.+..+...-..
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 5667788999999999888888887776655442 55678888999 9999999999998888877663211
Q ss_pred cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh
Q 039154 81 VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE 119 (211)
Q Consensus 81 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~ 119 (211)
....+.+......-++|....||..|++-+.++.-..|.
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 223445666777788999999999999999999877654
No 181
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.71 E-value=4.1 Score=30.84 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=83.9
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh----hHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh-
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW----FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD- 158 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~----l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~- 158 (211)
.+.+..-+.+++++.+..-|..++.-+..+++..+.+.+.++ +--.+.-+-+.+...++.+++..+..++.....
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344555677888998899999999999999999888766333 222223334455567888888888777654433
Q ss_pred -----H----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc------hhhHHHHHHH
Q 039154 159 -----I----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP------AHLKTDIMSI 206 (211)
Q Consensus 159 -----~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~------~~~~~~llp~ 206 (211)
+ .-..+++.++++++| ..+...+...|..+...++. ..+++.++++
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 1 356688888999998 67777888888888887653 2444445544
No 182
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=91.71 E-value=1.2 Score=32.71 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=68.8
Q ss_pred CcchHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-
Q 039154 7 PLYPIAVLTDELKNDD-IQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH- 83 (211)
Q Consensus 7 ~~~pl~~l~~~l~s~~-~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~- 83 (211)
+-.|+..+++...|+. .+.-...+-.+....+.- .....+.+..+.+ +.+.++.|..-+..-|..++++.|...+
T Consensus 2 ~~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ 79 (140)
T PF00790_consen 2 PSSSITELIEKATSESLPSPDWSLILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHR 79 (140)
T ss_dssp CCSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CCChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3467888888877654 222333444444433222 3444666777777 8888888888888888888887764332
Q ss_pred ---ccccchHHhhhccchh--hH--HHHHHHHHHHHHHhhcChhH
Q 039154 84 ---AHVLLPPLETLCTVEE--TC--MRDKAVESLCRIGSQMRESD 121 (211)
Q Consensus 84 ---~~~llp~l~~l~~d~~--~~--VR~~a~~~l~~l~~~l~~~~ 121 (211)
...++..+..++.+.. .. ||+.+.+.+..-+..|..+.
T Consensus 80 ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~ 124 (140)
T PF00790_consen 80 EVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDP 124 (140)
T ss_dssp HHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTST
T ss_pred HHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCC
Confidence 2235555666555442 22 88888888888888775443
No 183
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.53 E-value=1.9 Score=40.37 Aligned_cols=71 Identities=20% Similarity=0.128 Sum_probs=55.9
Q ss_pred hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH------HHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE------LRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~------l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
.+..+....+...++||..+..+|..+....|.+.++- =+.-++.++.|...-+|-.+.--|.++++--+.
T Consensus 123 ~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 123 NITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred hHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCch
Confidence 45556666777788999999999999999888874333 335678899999999999999988888876553
No 184
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=8.1 Score=32.86 Aligned_cols=178 Identities=12% Similarity=0.110 Sum_probs=110.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccc---c-ccccchHH
Q 039154 19 KNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVE---H-AHVLLPPL 91 (211)
Q Consensus 19 ~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~---~-~~~llp~l 91 (211)
.+.+.+.|..|...|-..+..+.-.. .-.-+.|.+.-.++.+.+||..++..++..++.-.... . ...+-.++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 35667778888777776665444321 11223344444889999999999999999887532100 0 11334556
Q ss_pred hhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhh---HHHHHHhhcC--CCchHHHhHHhHHHhhccCCChH---H-HH
Q 039154 92 ETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWF---IPLVKRLAAG--EWFTARVSACGLFHIAYPSAPDI---L-KT 162 (211)
Q Consensus 92 ~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l---~p~i~~l~~d--~~~~vR~~~a~~l~~l~~~~~~~---~-~~ 162 (211)
..+.++....+|..|..++..+.....+-...-.- +..+....++ ...+.+.-++.++..+...-..+ . ..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 67777888999999999999999888664321111 2223333334 44555666777777765543332 2 22
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 163 ELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 163 ~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
.+......+..--+++++.++...+-.....+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 3445556666667788888888887777766543
No 185
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.97 E-value=1.8 Score=44.11 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=105.1
Q ss_pred HhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchH-HhhhccchhhHHHHHHHHHHHHHHhh
Q 039154 39 ALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVEETCMRDKAVESLCRIGSQ 116 (211)
Q Consensus 39 ~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~-l~~l~~d~~~~VR~~a~~~l~~l~~~ 116 (211)
.+|++..+.--+-++.. +.-.+|..|.++++.++.++..+|...+...+... |+++.+-.++.-|..-.-+++.+-+.
T Consensus 867 ~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 867 SLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY 946 (2067)
T ss_pred ccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 44555544444455556 67789999999999999999999876665555544 67776666667777666666666555
Q ss_pred c---ChhHHHHhhHHHHHHhhcCCCc-hHHHhHHhHHHhhccCCChH---HH-HHHHHHHHHhcCC--CCHHHHHHHHHh
Q 039154 117 M---RESDLVDWFIPLVKRLAAGEWF-TARVSACGLFHIAYPSAPDI---LK-TELRSIYTQLCQD--DMPMVRRSAASN 186 (211)
Q Consensus 117 l---~~~~~~~~l~p~i~~l~~d~~~-~vR~~~a~~l~~l~~~~~~~---~~-~~l~~~~~~L~~D--~~~~VR~aaa~~ 186 (211)
. +..+..+.-+..+..+.+|+.- .|+......+.-+...-++- +. ..+.-+..-|+++ ...+|++.--+.
T Consensus 947 vgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~ 1026 (2067)
T KOG1822|consen 947 VGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRC 1026 (2067)
T ss_pred ccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccc
Confidence 4 4455556666688899999876 78877777776666655554 22 2233333333444 346777777777
Q ss_pred hH------HHHhhhCch
Q 039154 187 LR------KFAATVEPA 197 (211)
Q Consensus 187 l~------~~~~~~~~~ 197 (211)
+. .+...+|||
T Consensus 1027 ~~~~~~~~alittlgpe 1043 (2067)
T KOG1822|consen 1027 FNGDDDEDALITTLGPE 1043 (2067)
T ss_pred cccchhHHHHHHhcccc
Confidence 76 777777764
No 186
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.81 E-value=1.3 Score=42.85 Aligned_cols=100 Identities=11% Similarity=0.057 Sum_probs=84.3
Q ss_pred HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC---CChH--HHHHHH
Q 039154 91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS---APDI--LKTELR 165 (211)
Q Consensus 91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~---~~~~--~~~~l~ 165 (211)
|..-..|-.+.||..|+..|+.=.+..|.-.+....+.++-...+|.+-.||..|...+..++.. .+.= +.+.|.
T Consensus 292 FVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK 371 (1048)
T KOG2011|consen 292 FVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFK 371 (1048)
T ss_pred eeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 44456788899999999999999999999999999999999999999999999999999999988 2221 677788
Q ss_pred HHHHHhc-CCCCHHHHHHHHHhhHHH
Q 039154 166 SIYTQLC-QDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 166 ~~~~~L~-~D~~~~VR~aaa~~l~~~ 190 (211)
...+.++ .|-+..||......+-..
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 8888887 888899998776655443
No 187
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.58 E-value=0.39 Score=27.17 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=20.5
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHH
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIG 114 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~ 114 (211)
.+|.|..++++++..||+.|+.+|..++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4667777777777777777777777665
No 188
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=90.55 E-value=6.3 Score=32.30 Aligned_cols=102 Identities=12% Similarity=0.013 Sum_probs=62.7
Q ss_pred HhhhccchhhHHHHHHHHHHHHHHhhcChhHHH----HhhHHHHHHhhcCCCchHHHhHHhHHHhhc--cCCChHHHHHH
Q 039154 91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLV----DWFIPLVKRLAAGEWFTARVSACGLFHIAY--PSAPDILKTEL 164 (211)
Q Consensus 91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~----~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~--~~~~~~~~~~l 164 (211)
+...+.++++.+|..|+..|..+.+.++++... +.++.++..-. +++..+..+ ...+..+. ..++.+....+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl-~D~~~~~~~-l~gl~~L~~~~~~~~~~~~~i 81 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL-DDHACVQPA-LKGLLALVKMKNFSPESAVKI 81 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh-ccHhhHHHH-HHHHHHHHhCcCCChhhHHHH
Confidence 445668899999999999999999999976443 34555555444 334445444 45555554 23333333444
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHhhHHHHhhh
Q 039154 165 RSIYTQLCQ--DDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 165 ~~~~~~L~~--D~~~~VR~aaa~~l~~~~~~~ 194 (211)
...+.+-.+ .....+|..+.+-+..+....
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~ 113 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH 113 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh
Confidence 444444333 333677777777777666654
No 189
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.54 E-value=1.4 Score=43.66 Aligned_cols=112 Identities=22% Similarity=0.245 Sum_probs=75.5
Q ss_pred cccccchHHhhhccchhhHHHHHHHHHHHHHHhh----cChhH----HHHhhHHHHHHhhc---CC--------Cch---
Q 039154 83 HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQ----MRESD----LVDWFIPLVKRLAA---GE--------WFT--- 140 (211)
Q Consensus 83 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~----l~~~~----~~~~l~p~i~~l~~---d~--------~~~--- 140 (211)
.+-.++..+.+++.|+-..||..|+..+-++... +++.. +-+.++|++-+-.. ++ .|+
T Consensus 994 lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~ 1073 (1610)
T KOG1848|consen 994 LWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETS 1073 (1610)
T ss_pred HHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhh
Confidence 3455677888999999999999999999888554 55533 34556676642110 21 232
Q ss_pred --HHHhHHhHHHhhccCCCh-----HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 141 --ARVSACGLFHIAYPSAPD-----ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 141 --vR~~~a~~l~~l~~~~~~-----~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
+-...+++|+.-.+.+-. +.++.++..+.++..|..+++.-++..++.++...+
T Consensus 1074 ~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1074 CLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred hhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 112334444332222211 158899999999999999999999999999987654
No 190
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.16 E-value=8.4 Score=30.89 Aligned_cols=187 Identities=16% Similarity=0.048 Sum_probs=107.9
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhh--
Q 039154 17 ELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLET-- 93 (211)
Q Consensus 17 ~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~-- 93 (211)
.-+..++......++.|+.++..=. ......+..+.. ...+..+.+..+...+..+-+ .+ +.....|-+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~-~~-~r~f~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWK-AN-DRHFPFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHH-hC-chHHHHHHHHHHHHH
Confidence 4556777778788888877653221 222223333333 334444454444444444333 11 1111233333333
Q ss_pred -------hccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhh-cCCCchHHHhHHhHHHhhccCCChHHHHHHH
Q 039154 94 -------LCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLA-AGEWFTARVSACGLFHIAYPSAPDILKTELR 165 (211)
Q Consensus 94 -------l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~-~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~ 165 (211)
.-+++++.+..+...++..++...+. ....+++.+.... ++....++..+.+.+..+++.---++.+.+.
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~ 162 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK 162 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 12234567777878899999999887 4566778888887 7777888888889998888443333444555
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhHHHHhhhC-----chhhHHHHHHHHHhh
Q 039154 166 SIYTQLCQDDMPMVRRSAASNLRKFAATVE-----PAHLKTDIMSIFEDL 210 (211)
Q Consensus 166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~-----~~~~~~~llp~~~~L 210 (211)
-.--+|-.|..|.|=++.+.-+. +....+ .+.+...++..++++
T Consensus 163 vl~~~l~~~~rp~v~~~l~~l~~-l~~~~~~~~e~~~~~~~~~l~~lW~~ 211 (234)
T PF12530_consen 163 VLQKKLSLDYRPLVLKSLCSLFA-LVPQGAVDSEEYEELKRQILQLLWEY 211 (234)
T ss_pred HHHHhcCCccchHHHHHHHHHHH-HhccccCChhhhhHHHHHHHHHHHhh
Confidence 55556677888888776443332 222221 245666666666654
No 191
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=90.08 E-value=2 Score=33.29 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=49.8
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhhccC-CChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPS-APDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~-~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
+..++.|.+++-++.-.+|..+...+..+..+ +-.+ ..-+|.++.|..|+++.+|..|...+..+....+
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 45566677788888888888888877665332 2221 4678888888888888888888888777766554
No 192
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.89 E-value=6.1 Score=29.28 Aligned_cols=85 Identities=8% Similarity=0.091 Sum_probs=62.1
Q ss_pred hhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCC-CCHHHHHHHHHhhHHHHhhhCchh
Q 039154 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQD-DMPMVRRSAASNLRKFAATVEPAH 198 (211)
Q Consensus 125 ~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D-~~~~VR~aaa~~l~~~~~~~~~~~ 198 (211)
..+..+++-..+.+.+|-..+..++..+...+|.. ....|+..+.+++++ ..+.||.-+..-+...+..|..+-
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~ 116 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDP 116 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 34444444445667777777888888888888876 356888999999999 789999999999999999997543
Q ss_pred hHHHHHHHHHh
Q 039154 199 LKTDIMSIFED 209 (211)
Q Consensus 199 ~~~~llp~~~~ 209 (211)
-...+--.+..
T Consensus 117 ~l~~i~~~y~~ 127 (144)
T cd03568 117 SLSLMSDLYKK 127 (144)
T ss_pred ccHHHHHHHHH
Confidence 23334444433
No 193
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.87 E-value=3.6 Score=31.17 Aligned_cols=73 Identities=10% Similarity=0.083 Sum_probs=57.7
Q ss_pred HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCC-HHHHHHHHHhhHHHHhhhC
Q 039154 123 VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDM-PMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 123 ~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~-~~VR~aaa~~l~~~~~~~~ 195 (211)
-+.+...+.++.++++..-|...+.++..+++..+.+ ....++..+.+.++.++ +.+++++...+..+.....
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4556667888899999999999999999999988776 23456666666666544 7889999999999998876
No 194
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=89.85 E-value=1.2 Score=41.33 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcch
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERT 45 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~ 45 (211)
++.+.+...|.+..+|-++++.+.++++.+|-...
T Consensus 248 V~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~ 282 (993)
T COG5234 248 VDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLA 282 (993)
T ss_pred HHHHHcCcccccHHHHHHHHhhHHHHHhhcccccH
Confidence 55666777788899999999999999999997643
No 195
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=89.81 E-value=1.6 Score=29.76 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=43.8
Q ss_pred cchhhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCC--CchHHHhHHhHHHhh
Q 039154 96 TVEETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGE--WFTARVSACGLFHIA 152 (211)
Q Consensus 96 ~d~~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~--~~~vR~~~a~~l~~l 152 (211)
.++++.+|+.|++.+..++..++.. .++..+...+.+...|+ ++..++.+...+..+
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4667899999999999999998864 46666777776666654 467788888888776
No 196
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=89.71 E-value=8.9 Score=35.56 Aligned_cols=177 Identities=19% Similarity=0.174 Sum_probs=99.5
Q ss_pred Ccch-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhhcCCChHHHHHHHHHHHhccccccCc--c
Q 039154 7 PLYP-IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGG--V 81 (211)
Q Consensus 7 ~~~p-l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~--~ 81 (211)
+-.| ++.+-+++.+++...|..++-.|+.. --|+. .....|.|++.. .+...+|...++-.||-+. +|. +
T Consensus 449 e~dpalALLsdyv~~~~s~~ri~aIlGLgla--yaGsq~e~V~~lL~Pi~~d-~~~~~ev~~~aslsLG~If--vGscn~ 523 (878)
T KOG2005|consen 449 ECDPALALLSDYLQSSSSIHRIGAILGLGLA--YAGSQREEVLELLSPIMFD-TKSPMEVVAFASLSLGMIF--VGSCNE 523 (878)
T ss_pred ccCHHHHHHHHhccCCCceeehHHhhhhHHh--hcCCchHHHHHHHhHHhcC-CCCchhHHHHHHhhcceeE--EecCCh
Confidence 3344 88889999999999999999888643 23432 233344455543 2334668888888888653 332 3
Q ss_pred ccccccchHHhhhccch--hhHHHHHH-----------------HHHHHHHHhhcCh-----------------------
Q 039154 82 EHAHVLLPPLETLCTVE--ETCMRDKA-----------------VESLCRIGSQMRE----------------------- 119 (211)
Q Consensus 82 ~~~~~llp~l~~l~~d~--~~~VR~~a-----------------~~~l~~l~~~l~~----------------------- 119 (211)
+..+.++..|.+-.+-+ +...|.-+ ++.+..+.+.+..
T Consensus 524 dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q 603 (878)
T KOG2005|consen 524 DVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQ 603 (878)
T ss_pred HHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechh
Confidence 45556665555544422 23444322 2222222222211
Q ss_pred -------------------------------hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154 120 -------------------------------SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (211)
Q Consensus 120 -------------------------------~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~ 168 (211)
+.-.+..+-.+..+..=.....|.++--.++-++..-+ +-.++..+
T Consensus 604 ~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNP---q~~vlDtL 680 (878)
T KOG2005|consen 604 LLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNP---QVNVLDTL 680 (878)
T ss_pred hhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCC---cchHHHHH
Confidence 00011122223333333444567766666665554433 23677788
Q ss_pred HHhcCCCCHHHHHHHHHhhHHHH
Q 039154 169 TQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 169 ~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
-++.+|.+.+|-..++.++|-++
T Consensus 681 sk~shd~D~eva~naIfamGLiG 703 (878)
T KOG2005|consen 681 SKFSHDGDLEVAMNAIFAMGLIG 703 (878)
T ss_pred HHhccCcchHHHHHHHHHhcccc
Confidence 88888999998888877776443
No 197
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=89.54 E-value=3.2 Score=37.82 Aligned_cols=61 Identities=10% Similarity=0.065 Sum_probs=50.2
Q ss_pred cCCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 135 AGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 135 ~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
..+.-.+|-+++.-++.++...-++ .-..+..+|-.|+.|+.|.|+.-|..+++.|+..-.
T Consensus 490 ~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 490 SEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred hCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 4555569999999998887765443 346788899999999999999999999999998654
No 198
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=89.14 E-value=7.9 Score=30.34 Aligned_cols=161 Identities=20% Similarity=0.234 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHhCCcchhhchhhhhhh----cCCChHHHHHHHHHHHhccccccCccccccccchH-Hhhhccchh
Q 039154 25 LRLNSIRRLSTIARALGEERTPKELIPFLSA----NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVEE 99 (211)
Q Consensus 25 ~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~----~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~-l~~l~~d~~ 99 (211)
.-....+-+..+-..+|.. ....+.|.+.. -.+++...|..+-+.+|...+.+|++... .++|+ +.. .+..
T Consensus 16 aw~~vl~v~s~lf~~lg~~-~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL-~~lPLnl~~--~~~~ 91 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGER-SSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVL-SILPLNLDN--ADDS 91 (198)
T ss_pred HHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHH-HHCCCCccC--CCcC
Confidence 3445566666666777764 34556666554 23444678888888888888888877655 34443 211 2222
Q ss_pred hHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhc---C-----CCchHHH--hH----HhHHHhhccCCChH--HHHH
Q 039154 100 TCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAA---G-----EWFTARV--SA----CGLFHIAYPSAPDI--LKTE 163 (211)
Q Consensus 100 ~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~---d-----~~~~vR~--~~----a~~l~~l~~~~~~~--~~~~ 163 (211)
..-|.--+--|.+-...-+-..+.++++|+...+-+ + .....|. .. =.++|.+|..-.+- ....
T Consensus 92 ~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~ 171 (198)
T PF08161_consen 92 QPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPS 171 (198)
T ss_pred CcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHH
Confidence 222333333333333333445667788888766522 1 1111121 11 14456666542211 2256
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 164 LRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 164 l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
+-..+.++++|+ ++.|...+++|..+
T Consensus 172 ~a~~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 172 FAKLLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence 677777777776 78888888888665
No 199
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.60 E-value=2.5 Score=40.02 Aligned_cols=127 Identities=14% Similarity=0.136 Sum_probs=85.1
Q ss_pred ccccchHHhhhccch-hhHHHHHHHHHHHHHHhhcChhH---HHHhhHHHH-HHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154 84 AHVLLPPLETLCTVE-ETCMRDKAVESLCRIGSQMRESD---LVDWFIPLV-KRLAAGEWFTARVSACGLFHIAYPSAPD 158 (211)
Q Consensus 84 ~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l~~~~---~~~~l~p~i-~~l~~d~~~~vR~~~a~~l~~l~~~~~~ 158 (211)
...+.|.|..|++++ +..+-..|+.+|..+++.++..- +..+.+|.+ .+|..=+...|-.-+...+-.+...=+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 456789999999999 58999999999999999998862 345667766 4455555555655666666666555444
Q ss_pred H-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh--HHHHHHHHHhh
Q 039154 159 I-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL--KTDIMSIFEDL 210 (211)
Q Consensus 159 ~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~--~~~llp~~~~L 210 (211)
. .+.--+-.++..+.==+-.+.+.|..-..+.++.+.+|.+ .-+-+|+++.|
T Consensus 289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~l 343 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPL 343 (1051)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH
Confidence 4 1221122222222222456777888888889999988744 44677887654
No 200
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.35 E-value=1.3 Score=31.78 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHhccccccC-ccccc--cccchHHhhhccchhhHHHHHHHHHHHHHH
Q 039154 59 DDDEVLLAMAEELGVFIPYVG-GVEHA--HVLLPPLETLCTVEETCMRDKAVESLCRIG 114 (211)
Q Consensus 59 ~~~~VR~~~a~~L~~l~~~ig-~~~~~--~~llp~l~~l~~d~~~~VR~~a~~~l~~l~ 114 (211)
+++.+...+|.-+|.++++.. |.... --.-..+.+|++++++.||..|+.++.++.
T Consensus 56 ~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 56 DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 366677777777777777542 11111 122345677778888888888888877764
No 201
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.03 E-value=12 Score=31.92 Aligned_cols=140 Identities=14% Similarity=0.006 Sum_probs=91.1
Q ss_pred cCCChHHHHHHHHHHHhccccccCc--cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH---H-HhhHHH
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL---V-DWFIPL 129 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~---~-~~l~p~ 129 (211)
....+.+=+..+-+.|..++..+.- .-+..-.++.+...+++.+..+|+.|+..++..++.-++.+. + ..+=.+
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 3445566667777777777665532 111222334444488999999999999999999998776432 1 234456
Q ss_pred HHHhhcCCCchHHHhHHhHHHhhccCCChH---H-HHHHHHHHHHhcCC--CCHHHHHHHHHhhHHHHhhhC
Q 039154 130 VKRLAAGEWFTARVSACGLFHIAYPSAPDI---L-KTELRSIYTQLCQD--DMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~-~~~l~~~~~~L~~D--~~~~VR~aaa~~l~~~~~~~~ 195 (211)
+..+..|+.-++|..+.+.+..+.....+- + .-.=...+...+++ .+...++-++.-++.+...-.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 677888999999999988888887665443 1 11112344455555 667777777777777776544
No 202
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=87.57 E-value=6.6 Score=28.79 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=60.8
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHH-----HHHHHHHHHHhcCCCC--HH--HHHHHHHhhHHHHhhh
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSIYTQLCQDDM--PM--VRRSAASNLRKFAATV 194 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-----~~~l~~~~~~L~~D~~--~~--VR~aaa~~l~~~~~~~ 194 (211)
+..+..+.+-.+..+..+-..+..++..+....|..+ ...|+..+.+++.+.. +. ||.-+..-+...+..|
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4455555555566888888888888888888887762 3457888888777654 33 9999999999999999
Q ss_pred CchhhHHHHHHHHHh
Q 039154 195 EPAHLKTDIMSIFED 209 (211)
Q Consensus 195 ~~~~~~~~llp~~~~ 209 (211)
+.+--...+.-.+..
T Consensus 121 ~~~~~~~~i~~~y~~ 135 (140)
T PF00790_consen 121 KSDPELSLIQDTYKR 135 (140)
T ss_dssp TTSTTGHHHHHHHHH
T ss_pred CCCCCchHHHHHHHH
Confidence 654334445555444
No 203
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.56 E-value=1.6 Score=43.69 Aligned_cols=57 Identities=25% Similarity=0.343 Sum_probs=26.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh-cCCChHHHHHHHHH
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSA-NNDDDDEVLLAMAE 69 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~-~~D~~~~VR~~~a~ 69 (211)
..+....|+.+..|..|+..+..+...+|.+. .-.+++|++.+ ..|++++|-..+.+
T Consensus 1545 k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1545 KILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK 1604 (1621)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH
Confidence 34444445555555555555555555555432 22344455555 44555555444444
No 204
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=87.53 E-value=11 Score=33.34 Aligned_cols=160 Identities=15% Similarity=0.215 Sum_probs=96.6
Q ss_pred hchhhhhhh-c-CCChHHHHHHHHHHHhccccccCcc------ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcC
Q 039154 47 KELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGGV------EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMR 118 (211)
Q Consensus 47 ~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~~------~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~ 118 (211)
+.|..++.. + +..+|..-+-+-+.++.+.+..... .....++|.+...++.+-.+.=-++...+..+.+.-+
T Consensus 70 ~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 70 QHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344555555 3 3457889999999999998876532 3577899999999888866666777888888888877
Q ss_pred hhHHHHhhHHHHHHhhcCCCchHHHh---HHhHHHhhccC----C-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 119 ESDLVDWFIPLVKRLAAGEWFTARVS---ACGLFHIAYPS----A-PDILKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 119 ~~~~~~~l~p~i~~l~~d~~~~vR~~---~a~~l~~l~~~----~-~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
...+.+....++.-+.....|.-|-+ ....+..+... + .......++..|.+|+.-...+ ..+..-|..+
T Consensus 150 ~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~i 227 (435)
T PF03378_consen 150 SSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESI 227 (435)
T ss_dssp --S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHH
Confidence 44443333333444445555653322 22222222111 1 1224577899999999877655 4467888899
Q ss_pred HhhhCchhhHHHHHHHHH
Q 039154 191 AATVEPAHLKTDIMSIFE 208 (211)
Q Consensus 191 ~~~~~~~~~~~~llp~~~ 208 (211)
...++++.....+-++|.
T Consensus 228 v~~~p~~~l~~yl~~I~~ 245 (435)
T PF03378_consen 228 VENLPPEALEPYLKQIFT 245 (435)
T ss_dssp HHHS-HHHHGGGHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHH
Confidence 999998876666655543
No 205
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.48 E-value=6.8 Score=35.31 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=84.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCC--------hHHHHHHHHHHHhccccc--cCc
Q 039154 12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDD--------DDEVLLAMAEELGVFIPY--VGG 80 (211)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~--------~~~VR~~~a~~L~~l~~~--ig~ 80 (211)
+.+++-+.+.|+..|..|++.|. .+.=-..|+|+|.. +.+. +-+....+.+-...+..+ +--
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~-------TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~l 282 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLE-------TDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFL 282 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhc-------cCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccch
Confidence 34556677899999999988773 44445788999887 3221 112222222222222211 111
Q ss_pred cccccccchHHhh------h----ccchhhHHHHHHHHHHHHHHhhcChhH--HHHhhHHHHHHhhcCC--CchHHHhHH
Q 039154 81 VEHAHVLLPPLET------L----CTVEETCMRDKAVESLCRIGSQMRESD--LVDWFIPLVKRLAAGE--WFTARVSAC 146 (211)
Q Consensus 81 ~~~~~~llp~l~~------l----~~d~~~~VR~~a~~~l~~l~~~l~~~~--~~~~l~p~i~~l~~d~--~~~vR~~~a 146 (211)
+...+.|+|.+.. + -.|+.|.+|.-|++-+..++..++... +...+...+.+..-|. .|...|.+.
T Consensus 283 epYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai 362 (576)
T KOG2549|consen 283 EPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAI 362 (576)
T ss_pred hhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHH
Confidence 2344555555433 2 235678999999999999999998853 4455665665555554 588899998
Q ss_pred hHHHhhcc
Q 039154 147 GLFHIAYP 154 (211)
Q Consensus 147 ~~l~~l~~ 154 (211)
..+..+..
T Consensus 363 ~gL~~lg~ 370 (576)
T KOG2549|consen 363 AGLSELGH 370 (576)
T ss_pred HHHHHhhh
Confidence 88888755
No 206
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=87.41 E-value=22 Score=32.86 Aligned_cols=134 Identities=13% Similarity=0.035 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHHHH---HhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---cccccccchHHhhh
Q 039154 22 DIQLRLNSIRRLSTIAR---ALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEHAHVLLPPLETL 94 (211)
Q Consensus 22 ~~~~R~~a~~~l~~ia~---~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~~~~llp~l~~l 94 (211)
|...+.+++--+..+++ +|..+-.+.+..--+.+ ..|++-.|..++--++-+++--.|. .....-.+..+.++
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 44555566544444443 33333333333333333 6799999998887777777665554 23345567888899
Q ss_pred ccchhhHHHHHHHHHHHHHHhhcChhH----HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154 95 CTVEETCMRDKAVESLCRIGSQMRESD----LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 95 ~~d~~~~VR~~a~~~l~~l~~~l~~~~----~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
+.+....+|..+...|..+.-..+.+. ..+.-...+..+++|+.|.|-.-|-.++-.+...
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 999999999999999998865554433 3344567778899999999998888887776544
No 207
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=86.82 E-value=1.1 Score=24.70 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154 164 LRSIYTQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
.++.+.+|++.+++.+++.++..|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4677777888778888888888887765
No 208
>PF05536 Neurochondrin: Neurochondrin
Probab=86.59 E-value=25 Score=32.03 Aligned_cols=175 Identities=15% Similarity=0.148 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHH--HhCCcchhhchhhhhhh-cCCChH-HHHHHHHHHHhccccccCccc--cccccchHHhhhccchh
Q 039154 26 RLNSIRRLSTIAR--ALGEERTPKELIPFLSA-NNDDDD-EVLLAMAEELGVFIPYVGGVE--HAHVLLPPLETLCTVEE 99 (211)
Q Consensus 26 R~~a~~~l~~ia~--~lg~~~~~~~L~p~l~~-~~D~~~-~VR~~~a~~L~~l~~~ig~~~--~~~~llp~l~~l~~d~~ 99 (211)
+.-++.-|+.++. .+.....-..-+|.+.+ +..... ++-..+.+.|..++..-.|.. ....-+|.+.+...+ +
T Consensus 74 ~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~ 152 (543)
T PF05536_consen 74 LSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-Q 152 (543)
T ss_pred HHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-C
Confidence 4445555555543 11111233455788888 544444 777777777777775432221 122234555555444 6
Q ss_pred hHHHHHHHHHHHHHHhhcChhHHH------HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC---hH------HHHHH
Q 039154 100 TCMRDKAVESLCRIGSQMRESDLV------DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---DI------LKTEL 164 (211)
Q Consensus 100 ~~VR~~a~~~l~~l~~~l~~~~~~------~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~---~~------~~~~l 164 (211)
....+.|.+.+..+....+.+... ..+++.+.+......-+-|...+..++.+.+..+ .. ....+
T Consensus 153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l 232 (543)
T PF05536_consen 153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDL 232 (543)
T ss_pred cchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHH
Confidence 778899999999998888754322 2355556555555555567778888888876663 11 34566
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHhhHHHHhhhCchhhHH
Q 039154 165 RSIYTQLCQDDM-PMVRRSAASNLRKFAATVEPAHLKT 201 (211)
Q Consensus 165 ~~~~~~L~~D~~-~~VR~aaa~~l~~~~~~~~~~~~~~ 201 (211)
...+..+++... +.=|..+..-...+.+.+|++|+..
T Consensus 233 ~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~ 270 (543)
T PF05536_consen 233 RKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFA 270 (543)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcC
Confidence 666666665544 8889999999999999999988643
No 209
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=86.34 E-value=27 Score=32.15 Aligned_cols=150 Identities=14% Similarity=0.051 Sum_probs=89.7
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH----HHhhHHHHH
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL----VDWFIPLVK 131 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~----~~~l~p~i~ 131 (211)
..|-++-+|..+...|+...+.+..--..-..+-.+--.+.|.+..||....+.+..++...+..+. .+-+...|.
T Consensus 284 y~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rIL 363 (740)
T COG5537 284 YIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRIL 363 (740)
T ss_pred ccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 6788999999999999887776543222223344455577999999999999999999999877542 222333333
Q ss_pred Hh-hcCCCchHHHhHHhHHHhhcc--CCChHHHHHHHHHHHHhcCCCCHHH---HHHHHHhhHHHHh-hhC---chhhH-
Q 039154 132 RL-AAGEWFTARVSACGLFHIAYP--SAPDILKTELRSIYTQLCQDDMPMV---RRSAASNLRKFAA-TVE---PAHLK- 200 (211)
Q Consensus 132 ~l-~~d~~~~vR~~~a~~l~~l~~--~~~~~~~~~l~~~~~~L~~D~~~~V---R~aaa~~l~~~~~-~~~---~~~~~- 200 (211)
.+ ..|..- ||.+..+.+..+.. .+... -..+...+.-|..|.= +.....++.++.. .+. |++++
T Consensus 364 E~~r~D~d~-VRi~sik~l~~lr~lg~L~~S----eIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevikEKipl~~k~ 438 (740)
T COG5537 364 EFLRTDSDC-VRICSIKSLCYLRILGVLSSS----EILIVSSCMLDIIPDSRENIVESVESICKIDAEVIKEKIPLATKT 438 (740)
T ss_pred HHHhhccch-hhHHHHHHHHHHHHhcccchh----HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhcchhhhh
Confidence 33 445555 99988777766522 23222 2333444555666663 3333333333322 222 33432
Q ss_pred HHHHHHHHhh
Q 039154 201 TDIMSIFEDL 210 (211)
Q Consensus 201 ~~llp~~~~L 210 (211)
..++|.+.+.
T Consensus 439 n~lL~a~~qg 448 (740)
T COG5537 439 NRLLEAMKQG 448 (740)
T ss_pred hhHHHHHHhh
Confidence 4577766543
No 210
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.14 E-value=18 Score=34.37 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=93.8
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcC-C-ChHHHHHHHHHHHhccccccC------cc
Q 039154 11 IAVLTDELKNDD-IQLRLNSIRRLSTIARALGEERTPKELIPFLSANN-D-DDDEVLLAMAEELGVFIPYVG------GV 81 (211)
Q Consensus 11 l~~l~~~l~s~~-~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~-D-~~~~VR~~~a~~L~~l~~~ig------~~ 81 (211)
|..|-+-..+.. ++-|..|+..|..+++..-.+-...-+-|++..++ | .+++.-..+.+.+-.+...=. .+
T Consensus 24 I~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds 103 (970)
T KOG0946|consen 24 IEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDS 103 (970)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccc
Confidence 555666665555 67799999999988875544433344445555422 2 345555555555544433210 00
Q ss_pred c--------------cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh-----hHHHHHHhhcCCCchHH
Q 039154 82 E--------------HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW-----FIPLVKRLAAGEWFTAR 142 (211)
Q Consensus 82 ~--------------~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~-----l~p~i~~l~~d~~~~vR 142 (211)
. -.+..+..+..+.+..+..||.+++.-+..+...-|.+-..-. =+..+..+..|....+|
T Consensus 104 ~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IR 183 (970)
T KOG0946|consen 104 TQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIR 183 (970)
T ss_pred hhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhc
Confidence 0 0123355666677777889999999999999999888753322 23344556778888899
Q ss_pred HhHHhHHHhhccCCCh
Q 039154 143 VSACGLFHIAYPSAPD 158 (211)
Q Consensus 143 ~~~a~~l~~l~~~~~~ 158 (211)
..+...+.++....+.
T Consensus 184 Ne~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 184 NEAILLLSELVKDNSS 199 (970)
T ss_pred hhHHHHHHHHHccCch
Confidence 8888888888776664
No 211
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.80 E-value=6.3 Score=39.80 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=50.0
Q ss_pred hHHHHH-HhhcCCCchHHHhHHhHHHhh--ccCCC-h-HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 126 FIPLVK-RLAAGEWFTARVSACGLFHIA--YPSAP-D-ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 126 l~p~i~-~l~~d~~~~vR~~~a~~l~~l--~~~~~-~-~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
++-.++ ..+.+.+|+||.++.+-+..+ ...++ . ..++++.....++++|..-+||+.|+..|..+...
T Consensus 1527 ~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~ 1599 (1710)
T KOG1851|consen 1527 FLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQG 1599 (1710)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhc
Confidence 333344 345567899999987666543 22333 2 26889999999999999999999999999888764
No 212
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=85.66 E-value=22 Score=30.44 Aligned_cols=143 Identities=17% Similarity=0.166 Sum_probs=90.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-------hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--cc
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALGEER-------TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VE 82 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-------~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~ 82 (211)
.+.-.|+.++..++.-+|+++..|-....... ...+++|.+.. ...++.+|-+++.+.+..++.+-.+ .-
T Consensus 86 dLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleai 165 (524)
T KOG4413|consen 86 DLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAI 165 (524)
T ss_pred HHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHh
Confidence 45667888999999999999988876555433 24567788888 7788999999999999988764221 11
Q ss_pred cccccchH--HhhhccchhhHHHHHHHHHHHHHHhhcCh--hHHH-HhhHHHH-HHhhcCCCchHHHhHHhHHHhhccC
Q 039154 83 HAHVLLPP--LETLCTVEETCMRDKAVESLCRIGSQMRE--SDLV-DWFIPLV-KRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 83 ~~~~llp~--l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~~~~-~~l~p~i-~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
+.+.++.. +.++.--.++-+|....+-+.++...-+. ..++ +-++..+ ..|..-..--||..|.+....+...
T Consensus 166 FeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet 244 (524)
T KOG4413|consen 166 FESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET 244 (524)
T ss_pred cccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH
Confidence 22223322 34555555667777777777777655332 1222 2244433 3344435555777777777666543
No 213
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.52 E-value=27 Score=33.78 Aligned_cols=55 Identities=16% Similarity=-0.023 Sum_probs=30.1
Q ss_pred HHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 141 ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 141 vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
+|...-.++..+...--++.+..+++....+++.++..+=-.+.-.+.++++...
T Consensus 105 iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 105 IRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYE 159 (1010)
T ss_pred HHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence 4444444443332222123456666666666666666666666666666666654
No 214
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=85.37 E-value=15 Score=28.38 Aligned_cols=100 Identities=16% Similarity=0.079 Sum_probs=61.9
Q ss_pred cCCChHHHHHHHHHHHhccccccCc-----ccc--------------ccccc---hHHhhhccch-hhHHHHHHHHHHHH
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGG-----VEH--------------AHVLL---PPLETLCTVE-ETCMRDKAVESLCR 112 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~-----~~~--------------~~~ll---p~l~~l~~d~-~~~VR~~a~~~l~~ 112 (211)
..|.++.||.+++..+..+.+.... ++. ...|. -.|...++.| +..+--...+++..
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~ 128 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAV 128 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 6789999999999888777663210 100 01111 1122233444 45666678888888
Q ss_pred HHhhcChhH----HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154 113 IGSQMRESD----LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 113 l~~~l~~~~----~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
+.+.-+-+. +-..++..++.+..+..-.||.++..+++.+...
T Consensus 129 Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 129 LVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 887765543 3344455556666667778999998888877554
No 215
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=85.08 E-value=2 Score=32.32 Aligned_cols=131 Identities=18% Similarity=0.062 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---H-HHHhhHHHHHHh
Q 039154 58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---D-LVDWFIPLVKRL 133 (211)
Q Consensus 58 D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~-~~~~l~p~i~~l 133 (211)
...++||..+.-.+..+.+ ..++++.+.+-..+..+..+.+..-...++..+..+.+..+.- . ..+-+++.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~-~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLD-AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 4566677777666666543 2345556667777777777776666666666666665553321 1 122344444444
Q ss_pred hc--CCCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhcC-CCCHH-HHHHHHHhhHH
Q 039154 134 AA--GEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQ-DDMPM-VRRSAASNLRK 189 (211)
Q Consensus 134 ~~--d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~-D~~~~-VR~aaa~~l~~ 189 (211)
+. .++-.+-.++++++..-|-.-.-. ..++..+.+.++.+ +++.. ||--|+-.|.+
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 44 445556667777776544322111 35677777788884 44454 67766665543
No 216
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=85.05 E-value=1.2 Score=37.40 Aligned_cols=108 Identities=14% Similarity=0.066 Sum_probs=54.2
Q ss_pred cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh--HH--------HHhhHHHHHHhhcCCCchHHHhHHhHHHhh
Q 039154 83 HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES--DL--------VDWFIPLVKRLAAGEWFTARVSACGLFHIA 152 (211)
Q Consensus 83 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~--------~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l 152 (211)
....++.++... ..+..+..+...-+..++..-+.- .+ ..-.-|++. +.+.+.+-+...++.++..+
T Consensus 56 ~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 56 YASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp ------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHHHH
Confidence 344445555554 334555555555555555544310 00 113455555 66666777888888888888
Q ss_pred ccCCChHHH---HHHHHHHHHhcCC----CCHHHHHHHHHhhHHHHhh
Q 039154 153 YPSAPDILK---TELRSIYTQLCQD----DMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 153 ~~~~~~~~~---~~l~~~~~~L~~D----~~~~VR~aaa~~l~~~~~~ 193 (211)
...-+.... ..+++.|++.+.+ ++.++...|++.|..+...
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 776665522 3566666666554 4456778888888877653
No 217
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=84.87 E-value=2.5 Score=37.66 Aligned_cols=147 Identities=15% Similarity=0.153 Sum_probs=92.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC---------cchhhchhhhhhh----cCCChHHHHHHHHHHHhccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGE---------ERTPKELIPFLSA----NNDDDDEVLLAMAEELGVFIPY 77 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~---------~~~~~~L~p~l~~----~~D~~~~VR~~~a~~L~~l~~~ 77 (211)
-+.....+.|.....|..+.=.++.|..+|-. ++....++--... +.-+.+.||..+.+.||++.++
T Consensus 435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv 514 (728)
T KOG4535|consen 435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF 514 (728)
T ss_pred HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH
Confidence 45566667677778888887777777655422 1222333322221 4557788999999999998886
Q ss_pred cCc-------cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhc----ChhHHHHhhHHHHHHhhcC-CCchHHHhH
Q 039154 78 VGG-------VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQM----RESDLVDWFIPLVKRLAAG-EWFTARVSA 145 (211)
Q Consensus 78 ig~-------~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l----~~~~~~~~l~p~i~~l~~d-~~~~vR~~~ 145 (211)
+.+ +.....+...+..-.-.....||..+...++++.+.- ..-.....++|.+..|..| .+|.||..+
T Consensus 515 lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~A 594 (728)
T KOG4535|consen 515 LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRA 594 (728)
T ss_pred HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehh
Confidence 542 1111111111222222334678999999999997763 3334556778888877665 679999999
Q ss_pred HhHHHhhccCCC
Q 039154 146 CGLFHIAYPSAP 157 (211)
Q Consensus 146 a~~l~~l~~~~~ 157 (211)
|..+.......+
T Consensus 595 A~aL~vp~~re~ 606 (728)
T KOG4535|consen 595 AAALSVPGKREQ 606 (728)
T ss_pred hhhhcCCCCccc
Confidence 988866655444
No 218
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=84.27 E-value=8.8 Score=34.54 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=77.9
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHH---HHHHHHhCCcchhhchhhhhhh-----c--------CCChHHHHHHHHHHHh
Q 039154 11 IAVLTDELKND--DIQLRLNSIRRL---STIARALGEERTPKELIPFLSA-----N--------NDDDDEVLLAMAEELG 72 (211)
Q Consensus 11 l~~l~~~l~s~--~~~~R~~a~~~l---~~ia~~lg~~~~~~~L~p~l~~-----~--------~D~~~~VR~~~a~~L~ 72 (211)
++...+.+.++ +...|..+++-+ ..+....++... +.+.|.+.. . ..++.+.|..+=++||
T Consensus 321 ~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 321 LQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 56666677777 455565666666 666666655432 233333322 1 1245567777777777
Q ss_pred ccccccCc--cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh------HHHHhhHHHHHHhhcCCCchHHHh
Q 039154 73 VFIPYVGG--VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES------DLVDWFIPLVKRLAAGEWFTARVS 144 (211)
Q Consensus 73 ~l~~~ig~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~------~~~~~l~p~i~~l~~d~~~~vR~~ 144 (211)
.+++-... .+..+.+--+|..+ +++..+||.+.-++|..+...+..- .....+.-++.....+....+|++
T Consensus 400 ~L~~~~p~l~~~d~~li~~LF~sL-~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~ 478 (501)
T PF13001_consen 400 LLAKRAPSLFSKDLSLIEFLFDSL-EDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYA 478 (501)
T ss_pred HHHccCcccccccHHHHHHHHHHh-hCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHH
Confidence 77764322 11222333334444 6667777777777777777666431 112222223333344445567777
Q ss_pred HHhHHHhhccC
Q 039154 145 ACGLFHIAYPS 155 (211)
Q Consensus 145 ~a~~l~~l~~~ 155 (211)
+.+-...+++.
T Consensus 479 avk~an~~fpf 489 (501)
T PF13001_consen 479 AVKYANACFPF 489 (501)
T ss_pred HHHHHHHhCCc
Confidence 77666665554
No 219
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.14 E-value=14 Score=26.83 Aligned_cols=86 Identities=9% Similarity=0.032 Sum_probs=62.3
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHH-----HHHHHHHHHHhcCC---CCHHHHHHHHHhhHHHHhhhC
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSIYTQLCQD---DMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-----~~~l~~~~~~L~~D---~~~~VR~aaa~~l~~~~~~~~ 195 (211)
...+..+.+-.+.++..+...+..++..+....|..+ ..+++..+.+++.. ..+.||+-+..-+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4445555555566788889999999999988888862 23566668888886 478999999999999999998
Q ss_pred ch-hhHHHHHHHHHh
Q 039154 196 PA-HLKTDIMSIFED 209 (211)
Q Consensus 196 ~~-~~~~~llp~~~~ 209 (211)
.+ --...+...+..
T Consensus 116 ~~~~~~~~~~~~y~~ 130 (133)
T cd03561 116 GHSEDLPGIEDAYKL 130 (133)
T ss_pred CCCccchHHHHHHHH
Confidence 64 223344444433
No 220
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.02 E-value=22 Score=35.86 Aligned_cols=185 Identities=12% Similarity=0.113 Sum_probs=120.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhh----hhh-cCCChHHHHHHHHHHHhccccccCcc--cc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPF----LSA-NNDDDDEVLLAMAEELGVFIPYVGGV--EH 83 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~----l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~--~~ 83 (211)
+..+...|.--|+..+..|.+.++++......+..+. ++|. +.+ +.|++..||...-..+..+...++.. .+
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~-il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKG-ILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhh-hHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6677778888899999999999998876655554433 3433 334 78999999999988888877766532 34
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh----HHHHhhHHHHHHhhc--------C-----------CCch
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES----DLVDWFIPLVKRLAA--------G-----------EWFT 140 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~----~~~~~l~p~i~~l~~--------d-----------~~~~ 140 (211)
...+.|++.-...|....|-.+|-.++......-... .+...+.++..+... | ...|
T Consensus 122 LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~R 201 (1312)
T KOG0803|consen 122 LKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQR 201 (1312)
T ss_pred HHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHH
Confidence 4566677666667777788777777777765521111 112233444433210 1 1235
Q ss_pred HHHhHHhHHHhhccCCChH---H-----HH--HHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 141 ARVSACGLFHIAYPSAPDI---L-----KT--ELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 141 vR~~~a~~l~~l~~~~~~~---~-----~~--~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
|-.++...+..+....|.. . .+ .-...|-++.+++.|.||.+...-+-.+.+.+.+
T Consensus 202 vi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~ 267 (1312)
T KOG0803|consen 202 VISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILN 267 (1312)
T ss_pred HHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHH
Confidence 5555555555555444443 1 11 1346788999999999999999888887776653
No 221
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=83.92 E-value=14 Score=26.62 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHhhcChhHHHH-hhHHHHHHhhcCCCchHHHhHHhH
Q 039154 100 TCMRDKAVESLCRIGSQMRESDLVD-WFIPLVKRLAAGEWFTARVSACGL 148 (211)
Q Consensus 100 ~~VR~~a~~~l~~l~~~l~~~~~~~-~l~p~i~~l~~d~~~~vR~~~a~~ 148 (211)
..+...+.+++.....-.+.+.+.+ .+++.+.++.+++.. |..|+++
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~c 147 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHh
Confidence 5566666666666666666655544 266666666655543 4444443
No 222
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=83.87 E-value=2.3 Score=22.09 Aligned_cols=14 Identities=14% Similarity=-0.190 Sum_probs=7.9
Q ss_pred chHHHhHHhHHHhh
Q 039154 139 FTARVSACGLFHIA 152 (211)
Q Consensus 139 ~~vR~~~a~~l~~l 152 (211)
|.||+.++..++.+
T Consensus 1 ~~vR~~aa~aLg~~ 14 (30)
T smart00567 1 PLVRHEAAFALGQL 14 (30)
T ss_pred CHHHHHHHHHHHHc
Confidence 44566666665554
No 223
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=83.76 E-value=2.2 Score=36.79 Aligned_cols=48 Identities=27% Similarity=0.342 Sum_probs=24.3
Q ss_pred hHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 144 SACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 144 ~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
-++..+|.++..++. ..+.-+...+.+|.|.+..||+-|++.|+.+++
T Consensus 43 lasq~ip~~fk~fp~-la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~ 90 (460)
T KOG2213|consen 43 LASQFIPRFFKHFPS-LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCK 90 (460)
T ss_pred HHHHHHHHHHhhCch-hhhHHHHhhhccccccchhhHHHHHhccchhcc
Confidence 344444444444432 133445555555555555555555555555554
No 224
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=83.25 E-value=12 Score=39.83 Aligned_cols=193 Identities=15% Similarity=0.126 Sum_probs=113.2
Q ss_pred CcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC------c--chhhchhhhhhh--cCCChHHHHHHHHHHHh-ccc
Q 039154 7 PLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGE------E--RTPKELIPFLSA--NNDDDDEVLLAMAEELG-VFI 75 (211)
Q Consensus 7 ~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~------~--~~~~~L~p~l~~--~~D~~~~VR~~~a~~L~-~l~ 75 (211)
+.+|-..+-..+..+|.+.|.++...+..+-.-.-. - ++.+..+..+.. ..|.++.+|...-..+. .+.
T Consensus 479 ~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~ 558 (2341)
T KOG0891|consen 479 TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFD 558 (2341)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchh
Confidence 345556667778899999999985555443221111 1 224555555555 56888888888877776 221
Q ss_pred cccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh--------hcCCCchHHHhHHh
Q 039154 76 PYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL--------AAGEWFTARVSACG 147 (211)
Q Consensus 76 ~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l--------~~d~~~~vR~~~a~ 147 (211)
+. -.....+-.+.....|+.-.+|..++..++.++..-+ .+++|.+.+. --+..-++...++.
T Consensus 559 ~~----laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~ 629 (2341)
T KOG0891|consen 559 AQ----LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAK 629 (2341)
T ss_pred hh----hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHH
Confidence 11 1122233445566678888888888888777666433 4445544332 22222233444444
Q ss_pred HHHhhccCC---ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch--hhHHHHHHHHH
Q 039154 148 LFHIAYPSA---PDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA--HLKTDIMSIFE 208 (211)
Q Consensus 148 ~l~~l~~~~---~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~--~~~~~llp~~~ 208 (211)
.++.+.... -..+...+.-.....++|.+..|=+++...+++++.+-|.+ .....+++.+.
T Consensus 630 ~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~ 695 (2341)
T KOG0891|consen 630 LLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLII 695 (2341)
T ss_pred HhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHH
Confidence 443332211 11134455566677788999999999999999999988832 22235555553
No 225
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=83.06 E-value=8.8 Score=32.45 Aligned_cols=57 Identities=14% Similarity=-0.018 Sum_probs=38.1
Q ss_pred CCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 136 GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 136 d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
+.+.....+....|..-+..++.+.-+.+...|.+-++|..+.||++-...+++...
T Consensus 34 E~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 34 ESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 344555666655555554444444456777888888888888888888888887765
No 226
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.92 E-value=7.3 Score=28.28 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=47.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--------hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEER--------TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGG 80 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--------~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~ 80 (211)
.+..+...|++.|+.+...|+..|..+.+-.|..- .-.+++.++.......+.||.-+.+-+......++.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 37788888999999999999999999888888631 111222222211134667888777777776665554
No 227
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=82.78 E-value=2.2 Score=24.51 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=10.4
Q ss_pred cchHHhhhccchhhHHHHHHHH
Q 039154 87 LLPPLETLCTVEETCMRDKAVE 108 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~ 108 (211)
+...+..-+.|+++.||++|++
T Consensus 19 v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 19 VQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHhcCCChHHHHHHHH
Confidence 3344444444555555555443
No 228
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=82.56 E-value=33 Score=30.04 Aligned_cols=188 Identities=16% Similarity=0.160 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccC---ccc-
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVG---GVE- 82 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig---~~~- 82 (211)
+..+++.+.|+|+..|.....-++.|-......+ .++.+...+.+ . ......--..+-+-+|.+.+-.. .++
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh 214 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEH 214 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHH
Confidence 7789999999999999999888888765554332 23333333332 1 11111111222222233222111 011
Q ss_pred ---cccccchHH----------------hhhcc-chh---hHHH--------------HHHHHHHHHHHhhcChhHHHHh
Q 039154 83 ---HAHVLLPPL----------------ETLCT-VEE---TCMR--------------DKAVESLCRIGSQMRESDLVDW 125 (211)
Q Consensus 83 ---~~~~llp~l----------------~~l~~-d~~---~~VR--------------~~a~~~l~~l~~~l~~~~~~~~ 125 (211)
....++|+. ..+++ |.. ..+| ..-++-+..+++.+++++..+.
T Consensus 215 ~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i 294 (409)
T PF01603_consen 215 KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKI 294 (409)
T ss_dssp HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH
Confidence 112233322 22222 222 1111 1344567777777888877777
Q ss_pred hHHHHHHh---hcCCCchHHHhHHhHHHh-----hccCCChHHHHHHHHHHHHhcCCC-CHHHHHHHHHhhHHHHhhhCc
Q 039154 126 FIPLVKRL---AAGEWFTARVSACGLFHI-----AYPSAPDILKTELRSIYTQLCQDD-MPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 126 l~p~i~~l---~~d~~~~vR~~~a~~l~~-----l~~~~~~~~~~~l~~~~~~L~~D~-~~~VR~aaa~~l~~~~~~~~~ 196 (211)
..|++.++ .+++++.|-..+...+.. +...........++|.+.+.++.. ...||..+...+.-+.+ +++
T Consensus 295 ~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~-~d~ 373 (409)
T PF01603_consen 295 MVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME-MDP 373 (409)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT-TSH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hCH
Confidence 66666555 557777776666555432 111111112333444443333322 46788888888877766 555
Q ss_pred hhh
Q 039154 197 AHL 199 (211)
Q Consensus 197 ~~~ 199 (211)
+.+
T Consensus 374 ~lf 376 (409)
T PF01603_consen 374 KLF 376 (409)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 229
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.38 E-value=21 Score=32.37 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCC
Q 039154 100 TCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM 176 (211)
Q Consensus 100 ~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~ 176 (211)
..-|.+..+.+..++..+|.++..+.+.-.++. +..+|+.=.++...+..++..+..+ .-.+++..+.+| +..
T Consensus 366 ~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl--p~Q 441 (559)
T KOG2081|consen 366 FEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL--PEQ 441 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC--ccc
Confidence 356999999999999999999988887755555 7889999999999999999888876 234444444443 222
Q ss_pred HHHHHHHHHhhHHHHhhhCch
Q 039154 177 PMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 177 ~~VR~aaa~~l~~~~~~~~~~ 197 (211)
..+|.++..-+|.+.+.+...
T Consensus 442 ~~~~~ts~ll~g~~~ew~~~~ 462 (559)
T KOG2081|consen 442 APLRYTSILLLGEYSEWVEQH 462 (559)
T ss_pred hhHHHHHHHHHHHHHHHHHhC
Confidence 349999999999999998754
No 230
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=82.06 E-value=3.9 Score=36.80 Aligned_cols=95 Identities=23% Similarity=0.199 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcc-hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc------ccccchHH
Q 039154 20 NDDIQLRLNSIRRLSTIARALGEER-TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH------AHVLLPPL 91 (211)
Q Consensus 20 s~~~~~R~~a~~~l~~ia~~lg~~~-~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~------~~~llp~l 91 (211)
+++...|..+-..|+.+++....-- ..-.++.++.+ +.++.++||.++-++|..++..+..... ...+.-++
T Consensus 385 ~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~ 464 (501)
T PF13001_consen 385 SEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLL 464 (501)
T ss_pred cccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 5678889999999999998877643 34567777777 9899999999999999998887653221 11222234
Q ss_pred hhhccchhhHHHHHHHHHHHHHH
Q 039154 92 ETLCTVEETCMRDKAVESLCRIG 114 (211)
Q Consensus 92 ~~l~~d~~~~VR~~a~~~l~~l~ 114 (211)
.....+....+|..|++-.....
T Consensus 465 ~~~~~~~~~~~R~~avk~an~~f 487 (501)
T PF13001_consen 465 LSYIQSEVRSCRYAAVKYANACF 487 (501)
T ss_pred HhhccchhHHHHHHHHHHHHHhC
Confidence 44445666788888887655443
No 231
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=81.90 E-value=4.9 Score=30.15 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=65.6
Q ss_pred Hhhhcc-chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHH
Q 039154 91 LETLCT-VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTEL 164 (211)
Q Consensus 91 l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l 164 (211)
+..+.. ...+.+|..+.-.+.++. ...++...+.+-.++..+..+....-...+...+..+++....- ..+.+
T Consensus 9 L~~L~~~~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~ 87 (157)
T PF11701_consen 9 LTSLDMLRQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGF 87 (157)
T ss_dssp HHHHHCTTTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTH
T ss_pred HHHhcccCCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhH
Confidence 444444 556889999999999986 44556667788888888877666556666666666676665432 24567
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHhhH
Q 039154 165 RSIYTQLCQ--DDMPMVRRSAASNLR 188 (211)
Q Consensus 165 ~~~~~~L~~--D~~~~VR~aaa~~l~ 188 (211)
.+.+..++. -++..+-.++++.+.
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~~lell~ 113 (157)
T PF11701_consen 88 LESLLPLASRKSKDRKVQKAALELLS 113 (157)
T ss_dssp HHHHHHHHH-CTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 777777777 666777776666553
No 232
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.75 E-value=8.4 Score=32.42 Aligned_cols=100 Identities=15% Similarity=0.069 Sum_probs=63.0
Q ss_pred hhh-cCCChHHHHHHHHHHHhccccccCccccccc---cchHHhhhccchhhHHHHHHHHHHHHHHhhcChh-HHHHhhH
Q 039154 53 LSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV---LLPPLETLCTVEETCMRDKAVESLCRIGSQMRES-DLVDWFI 127 (211)
Q Consensus 53 l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~---llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~ 127 (211)
+.+ +.+.+|.||+++.+.+-.+..- |......+ .++.+.++++|.++ -.-|+.++.+++++-.-. ..-+.++
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445 7889999999999888776543 32222222 24557777777776 555667777777664332 2233355
Q ss_pred HHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154 128 PLVKRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 128 p~i~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
..+..+..|+.|..-...|-++.+++..
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhccC
Confidence 5566667788777666666666666544
No 233
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.74 E-value=39 Score=32.29 Aligned_cols=149 Identities=10% Similarity=-0.037 Sum_probs=93.3
Q ss_pred chhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch-hhHHHHHHHHHHHHHHhhc-----Ch--
Q 039154 48 ELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCMRDKAVESLCRIGSQM-----RE-- 119 (211)
Q Consensus 48 ~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l-----~~-- 119 (211)
.|-.++.+.-+.+|.||+.+-+.|..... . ..+.+.++.-+.++. +..+|.+|.-.+++.++.- +.
T Consensus 6 ~l~~~l~qTl~pdps~rk~aEr~L~~~e~----q--~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 6 TLANYLLQTLSPDPSVRKPAERALRSLEG----Q--QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred HHHHHHHhcCCCCCccCchHHHHHHHhcc----C--CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 34445555567778899999888887433 2 335555555555555 5788999999999888841 11
Q ss_pred ---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 120 ---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 120 ---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
+.-.+.+-..|..+.-.....+-+-..+.+.-++..-=++-|..|+|-+.+-++-.+..|-.+....-+.+-+.+-+
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ 159 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRP 159 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCc
Confidence 11233344444445445555666666666665554433335888999988888877777666666666777777666
Q ss_pred hhhHHH
Q 039154 197 AHLKTD 202 (211)
Q Consensus 197 ~~~~~~ 202 (211)
+...+.
T Consensus 160 efrSda 165 (960)
T KOG1992|consen 160 EFRSDA 165 (960)
T ss_pred ccccHH
Confidence 544433
No 234
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=80.85 E-value=3.8 Score=29.41 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=34.5
Q ss_pred HHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 141 ARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 141 vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
+-..+|.=++.++...+.- ..-.......+|+++++++||..|..++..+..
T Consensus 60 ~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 60 TLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred eeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3444556566665554332 123456778899999999999999999987753
No 235
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=80.85 E-value=14 Score=38.36 Aligned_cols=111 Identities=16% Similarity=0.093 Sum_probs=81.0
Q ss_pred cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh-hH-----HH-HhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154 83 HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE-SD-----LV-DWFIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 83 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~-~~-----~~-~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
.|..+-+.+.....+++..|+..|+.+|.+++.++-. ++ .+ ..+=|+..-+.+.....||..+..++..+...
T Consensus 1134 iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076 1134 IWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 3445556677766666778999999999999887643 22 23 34456666677777889999999999888776
Q ss_pred CChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 156 APDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 156 ~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
.+.. -|+.++..|-.-..|+.+.+=+.+.+.+..+.+-
T Consensus 1214 ~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076 1214 RVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred HHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence 6655 3677777777777888877777788888776543
No 236
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=80.74 E-value=9.5 Score=28.73 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=75.2
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh--cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154 11 IAVLTDELKNDD-IQLRLNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 11 l~~l~~~l~s~~-~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
+..++.-||.+. ...|.++++-++.+. ++.|-+-+ ..-..... ..+.+........-. ..... -+.+......
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilG-ALDP~~~k-~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~ee~y~~vv 87 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILG-ALDPYKHK-SIQKSLDSKSSENSNDESTDISLPM-MGISP-SSEEYYPTVV 87 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhcc-ccCcHHHh-cccccCCccccccccccchhhHHhh-ccCCC-chHHHHHHHH
Confidence 778888888775 888999999998764 22222211 00000000 011111111111110 01100 1123334445
Q ss_pred chHHhhhccchhh-HHHHHHHHHHHHHHhhcChhH--HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhc
Q 039154 88 LPPLETLCTVEET-CMRDKAVESLCRIGSQMRESD--LVDWFIPLVKRLAAGEWFTARVSACGLFHIAY 153 (211)
Q Consensus 88 lp~l~~l~~d~~~-~VR~~a~~~l~~l~~~l~~~~--~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~ 153 (211)
+..|...++|..- .-+..++.++..+.+.++..- .-..++|.+.+......-+.|...-..+..+.
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6667777788864 455677888888887776653 34567777777766544467776666655543
No 237
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.39 E-value=21 Score=26.34 Aligned_cols=84 Identities=10% Similarity=0.042 Sum_probs=58.5
Q ss_pred hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcC-CCCHHHHHHHHHhhHHHHhhhCchhh
Q 039154 126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQ-DDMPMVRRSAASNLRKFAATVEPAHL 199 (211)
Q Consensus 126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~-D~~~~VR~aaa~~l~~~~~~~~~~~~ 199 (211)
.+-.+++-.+..+..+=..+..++..+...+|.. ....|+..+.+++. ...+.||+-+..-+...+..|+.+--
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~ 121 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQ 121 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3334444445566777777788888887777775 35678888888887 46689999999999999999976533
Q ss_pred HHHHHHHHHh
Q 039154 200 KTDIMSIFED 209 (211)
Q Consensus 200 ~~~llp~~~~ 209 (211)
...+.-.+..
T Consensus 122 l~~i~~~y~~ 131 (142)
T cd03569 122 LKYVVDTYQI 131 (142)
T ss_pred cHHHHHHHHH
Confidence 3334444433
No 238
>PHA02861 uncharacterized protein; Provisional
Probab=80.26 E-value=21 Score=26.30 Aligned_cols=128 Identities=14% Similarity=0.067 Sum_probs=79.0
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhc
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAA 135 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~ 135 (211)
.-..++.|+.++.+-+-=-..-....+..-.+.-.|+.+-+|.+..-++ .+..+.+.++.+.+. ....+|+-+..
T Consensus 12 ~~~~~DdI~~~i~dYiyWSs~~~r~Re~AG~vf~vl~SFr~DA~~VFg~----~lr~fVk~~~~~~v~-~~~~~I~~~l~ 86 (149)
T PHA02861 12 CLNRDDDIRQIIVDYIYWSMYSYRSRSPAGKVFQVLKMFRRDSEIVFGE----NFRHIVKNFKTLGIE-DTVQAVKCFTV 86 (149)
T ss_pred cCCccchHHHHHHHHHHHhhccccccCccchHHHHHHHHHhhHHHHHHH----HHHHHHHhCCccchH-hHHHHHHHHhc
Confidence 4456788999998888544433444555667888888887777655543 333444444443332 23334555555
Q ss_pred CCCchHHHhH--HhHHHhhccCCChH-----HHHHHHHHHHHhcCCCC-HHHHHHHHHhhHH
Q 039154 136 GEWFTARVSA--CGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDM-PMVRRSAASNLRK 189 (211)
Q Consensus 136 d~~~~vR~~~--a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~~-~~VR~aaa~~l~~ 189 (211)
+++ ..|.+| ..++...+...|.+ ...+.+..+..|+.|.+ +.||..+.-.|.+
T Consensus 87 ~en-~irE~cAiIGL~A~~AeYWGged~Pt~~S~~vl~l~~~Llsd~d~~~i~~~l~vRl~k 147 (149)
T PHA02861 87 GKN-ALRESVSMVDLCASLAEYWGGEDLPTNDSLQALKLMTILLSDDDYSFIELCLRVRLKK 147 (149)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHHHh
Confidence 554 345544 46666777777765 35677888999999998 6677666555543
No 239
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.99 E-value=9.6 Score=32.68 Aligned_cols=62 Identities=19% Similarity=0.120 Sum_probs=47.8
Q ss_pred HHHHHhhcCCCchHHHhHHhHHHhhccC--CChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154 128 PLVKRLAAGEWFTARVSACGLFHIAYPS--APDILKTELRSIYTQLCQDDMPMVRRSAASNLRK 189 (211)
Q Consensus 128 p~i~~l~~d~~~~vR~~~a~~l~~l~~~--~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~ 189 (211)
--+..+.++++..-|.-++..++-.+.. ++......+.+.+..|+.|.++.||+.++..|.+
T Consensus 10 ~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 10 QDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 3456677888877777776666554443 3444678899999999999999999999999975
No 240
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.93 E-value=17 Score=34.58 Aligned_cols=150 Identities=10% Similarity=0.034 Sum_probs=100.5
Q ss_pred ChHHHHHHHHHHHhccccccCccc---cccccchHHhhhccchh--hHHHHHHHHHHHHHHhhcCh--------------
Q 039154 59 DDDEVLLAMAEELGVFIPYVGGVE---HAHVLLPPLETLCTVEE--TCMRDKAVESLCRIGSQMRE-------------- 119 (211)
Q Consensus 59 ~~~~VR~~~a~~L~~l~~~ig~~~---~~~~llp~l~~l~~d~~--~~VR~~a~~~l~~l~~~l~~-------------- 119 (211)
|.+.-|+++++-++.+++...+.. ...++-..+.++.++.. |.-...|+.-+..++-+-..
T Consensus 374 DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv 453 (960)
T KOG1992|consen 374 DVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDV 453 (960)
T ss_pred CcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccH
Confidence 444567888888888888764422 22333445556666664 44455566655555544211
Q ss_pred -hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh------
Q 039154 120 -SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA------ 192 (211)
Q Consensus 120 -~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~------ 192 (211)
+.+.+.++|-+.+-...+..-.|..+.+-...+-..+|++..-.++|....+|+-+++-|-.=||.++.++.-
T Consensus 454 ~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~ 533 (960)
T KOG1992|consen 454 VDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSN 533 (960)
T ss_pred HHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCcc
Confidence 3455677777765444555667777777777778889988888899999999999999999999999998864
Q ss_pred --hhCchhhHHHHHHHHH
Q 039154 193 --TVEPAHLKTDIMSIFE 208 (211)
Q Consensus 193 --~~~~~~~~~~llp~~~ 208 (211)
.++++.+...+.+.+.
T Consensus 534 ~~if~~~~iap~~~~ll~ 551 (960)
T KOG1992|consen 534 AKIFGAEDIAPFVEILLT 551 (960)
T ss_pred ccccchhhcchHHHHHHH
Confidence 4455555544444443
No 241
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.92 E-value=12 Score=31.45 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=41.0
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhh-cCCChHHHHHHHHHHHhcccc
Q 039154 9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIP 76 (211)
Q Consensus 9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~ 76 (211)
.++..+.+-+.|.+|.+|..|+..+..+... |... -...+++-+.+ +.|..+ -.-++.++.++++
T Consensus 3 s~l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq 71 (353)
T KOG2973|consen 3 SELVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ 71 (353)
T ss_pred hHHHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh
Confidence 4688899999999999999999888655322 2221 12344455555 455444 4445555555554
No 242
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=79.83 E-value=2.4 Score=23.28 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=18.6
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHH
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIG 114 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~ 114 (211)
.+|.|..+++.+++.++..|+.+|..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4556666666666777777777776654
No 243
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=79.45 E-value=4.2 Score=31.08 Aligned_cols=65 Identities=17% Similarity=0.005 Sum_probs=40.5
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhH
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESD 121 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~ 121 (211)
-.|+--++|+++-+.+..+.......-....++..+..-++| +..||.-+...+.+++...+...
T Consensus 36 ~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v 100 (169)
T PF08623_consen 36 KVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEV 100 (169)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHH
Confidence 356677777777777777776555444445556666666666 67777777777777766554443
No 244
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=79.44 E-value=24 Score=28.09 Aligned_cols=30 Identities=7% Similarity=-0.047 Sum_probs=17.2
Q ss_pred hhHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (211)
Q Consensus 125 ~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~ 154 (211)
.+++.+..+.+|..+.||++..-.|..++.
T Consensus 154 ~if~i~E~~l~d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 154 EIFEIIELLLGDKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 455555555555555556555555555555
No 245
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=78.70 E-value=30 Score=27.19 Aligned_cols=102 Identities=18% Similarity=0.252 Sum_probs=65.9
Q ss_pred ccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhc-CCCchHHHhHHhHH-HhhccCCChHHHHH
Q 039154 86 VLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAA-GEWFTARVSACGLF-HIAYPSAPDILKTE 163 (211)
Q Consensus 86 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~-d~~~~vR~~~a~~l-~~l~~~~~~~~~~~ 163 (211)
.+..+...|.+....+.|..|+..+...-..++.+. ++.+.++.. -++|.+--..|..+ +.+... ...
T Consensus 46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~-----~~~ 115 (208)
T cd07064 46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTKSWWDTVDSLAKVVGGILLAD-----YPE 115 (208)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC-----Chh
Confidence 344556667788888899999998888766665554 334444433 35676544444333 333211 234
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 164 LRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
+.+.+.+++.|+..++|++|+-..-.+.+....+
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~~ 149 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKEKTDTD 149 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHccCHH
Confidence 5788899999999999999988766665554443
No 246
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.88 E-value=12 Score=37.91 Aligned_cols=60 Identities=15% Similarity=0.044 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHhhcChhHHH--HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154 99 ETCMRDKAVESLCRIGSQMRESDLV--DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (211)
Q Consensus 99 ~~~VR~~a~~~l~~l~~~l~~~~~~--~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~ 158 (211)
...+|..|+-++..+...++...+. ..++|++.++-+|+.-.|-..|...+..+-..+|+
T Consensus 1554 ~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1554 SRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred cHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 3445555555555555555554332 34555555555555555555555544444444443
No 247
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=77.42 E-value=26 Score=25.87 Aligned_cols=97 Identities=9% Similarity=-0.006 Sum_probs=64.2
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh----HHHHhhHHHHH
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES----DLVDWFIPLVK 131 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~----~~~~~l~p~i~ 131 (211)
...+++..-..+|..+..= ..|+. ..+..+..-+...++.|...|+.-|..+.+.+|.. .....++.-+.
T Consensus 13 l~~~dw~~il~icD~I~~~--~~~~k----~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~ 86 (144)
T cd03568 13 LTSENWGLILDVCDKVKSD--ENGAK----DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK 86 (144)
T ss_pred CCCcCHHHHHHHHHHHhcC--CccHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 3445666666677666542 12332 33444555556777888888888888888888763 44566777777
Q ss_pred HhhcC-CCchHHHhHHhHHHhhccCCCh
Q 039154 132 RLAAG-EWFTARVSACGLFHIAYPSAPD 158 (211)
Q Consensus 132 ~l~~d-~~~~vR~~~a~~l~~l~~~~~~ 158 (211)
++..+ ....||.-+...+..-+..+..
T Consensus 87 kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 87 KLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 88777 5567888888777776655553
No 248
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=77.34 E-value=49 Score=28.91 Aligned_cols=154 Identities=13% Similarity=0.077 Sum_probs=86.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHH
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l 91 (211)
.+++.-|..-.+.|+ |.+-++..=+..+.-. .+-+..-.. |.|++-.||+.+.+-|+.|++ + +....+-+.+
T Consensus 29 ~il~~~k~~~k~k~l-asq~ip~~fk~fp~la--~~a~da~~d~~ed~d~~ir~qaik~lp~fc~---~-d~~~rv~d~l 101 (460)
T KOG2213|consen 29 GILKAVKGTSKEKRL-ASQFIPRFFKHFPSLA--DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCK---G-DALSRVNDVL 101 (460)
T ss_pred HHHHHhhcchHHHHH-HHHHHHHHHhhCchhh--hHHHHhhhccccccchhhHHHHHhccchhcc---C-chhhhhHHHH
Confidence 344444444444443 4444554444443211 222333334 678888899999999999987 2 4445555555
Q ss_pred hhhccc------------hhhHHHHHHHHHHHHHHhhcCh----hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhh---
Q 039154 92 ETLCTV------------EETCMRDKAVESLCRIGSQMRE----SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIA--- 152 (211)
Q Consensus 92 ~~l~~d------------~~~~VR~~a~~~l~~l~~~l~~----~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l--- 152 (211)
.+|++. .++.+|+.+.+=+..=.-.++. ++++.+++..+++..+|..-.-=..+-..+..+
T Consensus 102 ~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~ 181 (460)
T KOG2213|consen 102 VQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSL 181 (460)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 554331 2567888887766554444443 456677888888777776543333333444433
Q ss_pred ccCCChHHHHHHHHHHHHhcC
Q 039154 153 YPSAPDILKTELRSIYTQLCQ 173 (211)
Q Consensus 153 ~~~~~~~~~~~l~~~~~~L~~ 173 (211)
....|.+...+|...+..+.+
T Consensus 182 ~~k~~~a~lqeLa~~~e~~a~ 202 (460)
T KOG2213|consen 182 QTKAGEARLQELAEEQEGLAD 202 (460)
T ss_pred cCCCCHHHHHHHHHHHhhhhc
Confidence 223444455667777766654
No 249
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=77.09 E-value=45 Score=28.40 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=73.5
Q ss_pred HhhhccchhhHHHHHHHHHHHHHHhhcC---hhHH---HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----
Q 039154 91 LETLCTVEETCMRDKAVESLCRIGSQMR---ESDL---VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----- 159 (211)
Q Consensus 91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~---~~~~---~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----- 159 (211)
+.+..+..+..|-.-|..++..+...-. .+.+ .+.++..+.+|..++++-.|.-..++++++...-..-
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~ 248 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTR 248 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHH
Confidence 4455666777787788888887766532 2222 3456778899999999999999999999986443321
Q ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 160 --~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
....-+.....|++|++..+|-.|..-+.-|+..
T Consensus 249 yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 249 YISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 2356778889999999999999999999888876
No 250
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=76.26 E-value=45 Score=28.04 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHh---hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHH---HHHHhcCC
Q 039154 101 CMRDKAVESLCRIGSQMRESDLVDW---FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS---IYTQLCQD 174 (211)
Q Consensus 101 ~VR~~a~~~l~~l~~~l~~~~~~~~---l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~---~~~~L~~D 174 (211)
.|-.+|.+....+.+.++++...+. ..|.+.-+....+-.||.....++...+-.+|.....-+.+ .++.-+.|
T Consensus 70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLed 149 (307)
T PF04118_consen 70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLED 149 (307)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccccc
Confidence 4666777777777777777665443 23444445555555677777777766666666653333333 33333556
Q ss_pred CCHHHHHHHHHhhHHHHhhhCchhhH
Q 039154 175 DMPMVRRSAASNLRKFAATVEPAHLK 200 (211)
Q Consensus 175 ~~~~VR~aaa~~l~~~~~~~~~~~~~ 200 (211)
+..++-..+..-+..+...+|.+.+-
T Consensus 150 e~sE~~~~~~~ll~~l~~~v~~~~F~ 175 (307)
T PF04118_consen 150 EGSEFFDRTLKLLDKLKEAVGDKYFW 175 (307)
T ss_pred CCchHHHHHHHHHHHHHHhcChhHHH
Confidence 66777777777777777776666433
No 251
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.33 E-value=30 Score=25.48 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=55.0
Q ss_pred chHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc----
Q 039154 9 YPIAVLTDELKNDDI-QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE---- 82 (211)
Q Consensus 9 ~pl~~l~~~l~s~~~-~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~---- 82 (211)
.|+..+++...|+.. +.-...+-.+..+.+. .+ ....+.+-.+.+ +++.++.|-.-+..-|..+++..|..-
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~-~~-~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev 80 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRS-KD-VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEV 80 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhC-CC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 356667776666542 2222233223322221 11 223444555555 666777776666677777776665421
Q ss_pred cccccchHHhhhccc-hhhHHHHHHHHHHHHHHhhcCh
Q 039154 83 HAHVLLPPLETLCTV-EETCMRDKAVESLCRIGSQMRE 119 (211)
Q Consensus 83 ~~~~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~l~~ 119 (211)
....++..+..++++ ....||..++.-+..-+..+..
T Consensus 81 as~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 81 ASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred hhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 123334444444443 2455666666666666555543
No 252
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=75.02 E-value=25 Score=24.46 Aligned_cols=61 Identities=11% Similarity=0.038 Sum_probs=44.0
Q ss_pred CCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh
Q 039154 137 EWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL 199 (211)
Q Consensus 137 ~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~ 199 (211)
....-|..+...+..+....|+. +..++.-++...+..+ ++|..+.+.-..+++.++++.+
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l 90 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDL 90 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHH
Confidence 45566777888888887743333 4566666666666655 8899999999999999888543
No 253
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=74.86 E-value=21 Score=27.94 Aligned_cols=27 Identities=19% Similarity=0.054 Sum_probs=12.3
Q ss_pred hhcCCCchHHHhHHhHHHhhccCCChH
Q 039154 133 LAAGEWFTARVSACGLFHIAYPSAPDI 159 (211)
Q Consensus 133 l~~d~~~~vR~~~a~~l~~l~~~~~~~ 159 (211)
+.+++.+..|..+=..++.....+|++
T Consensus 49 lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 49 LRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred HHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 333444444444444444444444443
No 254
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=74.33 E-value=56 Score=28.13 Aligned_cols=85 Identities=7% Similarity=0.006 Sum_probs=40.8
Q ss_pred HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH------HHH-HHHHHHHHhcCCCCH----HHHHHHHHhhHHHH
Q 039154 123 VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI------LKT-ELRSIYTQLCQDDMP----MVRRSAASNLRKFA 191 (211)
Q Consensus 123 ~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~------~~~-~l~~~~~~L~~D~~~----~VR~aaa~~l~~~~ 191 (211)
.+..+.....-.+++...+|..+-..-..+......+ ..+ -..|+...+=..... .+|..+..+++++.
T Consensus 272 ~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 272 LNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 3444444555555555566665544433332222211 111 123444444344444 78888888887777
Q ss_pred hh-hCchhhHHHHHHHHH
Q 039154 192 AT-VEPAHLKTDIMSIFE 208 (211)
Q Consensus 192 ~~-~~~~~~~~~llp~~~ 208 (211)
-. |.|.. ....+-.++
T Consensus 352 y~~f~p~~-~~~~~~~~w 368 (372)
T PF12231_consen 352 YYAFRPSA-SPLLLDTLW 368 (372)
T ss_pred HHHhCCCC-CHHHHHHhh
Confidence 55 33332 344444443
No 255
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=74.27 E-value=80 Score=30.09 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=80.8
Q ss_pred ccccccccchHHhhhc-----cchh-hHHH--HHHHHHHHHHHhhcCh-----hHHHHhhHHHHHHhhcCCCchHHHhHH
Q 039154 80 GVEHAHVLLPPLETLC-----TVEE-TCMR--DKAVESLCRIGSQMRE-----SDLVDWFIPLVKRLAAGEWFTARVSAC 146 (211)
Q Consensus 80 ~~~~~~~llp~l~~l~-----~d~~-~~VR--~~a~~~l~~l~~~l~~-----~~~~~~l~p~i~~l~~d~~~~vR~~~a 146 (211)
++++.+-+++.+...+ .+.+ +..| +.|...+..+...++. ......++|.+.-...++.--.|.-+|
T Consensus 402 ke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srac 481 (970)
T COG5656 402 KEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRAC 481 (970)
T ss_pred chhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHH
Confidence 4555566676665554 2222 3333 4566666665553322 233445555555555666655677788
Q ss_pred hHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc-hhhHHHHHHHHHh
Q 039154 147 GLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP-AHLKTDIMSIFED 209 (211)
Q Consensus 147 ~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~-~~~~~~llp~~~~ 209 (211)
+.+..+...+... ....++..-.+.+++++--||-.||-++.-+...-.. +.+.+++.|..++
T Consensus 482 e~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek 546 (970)
T COG5656 482 EFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK 546 (970)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence 8888885555554 4567777778889999999999999999988876543 2344444444444
No 256
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=74.01 E-value=31 Score=26.67 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=13.6
Q ss_pred cCCChHHHHHHHHHHHhccc
Q 039154 56 NNDDDDEVLLAMAEELGVFI 75 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~ 75 (211)
+...-+-||..|+..|..+.
T Consensus 16 a~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 16 AAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55566667777777777666
No 257
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.82 E-value=31 Score=24.98 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=61.1
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCCCC--HHHHHHHHHhhHHHHhhhCc
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDM--PMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~~--~~VR~aaa~~l~~~~~~~~~ 196 (211)
...+..+.+-.++++..+=..+..++..+...+|.. ...+|...+.+++.+.. +.||+-+..-+...+..|..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 334444544445677777777788888888888876 35678888888888765 45999999999999999964
Q ss_pred hhhHHHHHHHHHhh
Q 039154 197 AHLKTDIMSIFEDL 210 (211)
Q Consensus 197 ~~~~~~llp~~~~L 210 (211)
+--...+...++.|
T Consensus 116 ~~~~~~i~~~y~~L 129 (133)
T smart00288 116 DPDLSQIVDVYDLL 129 (133)
T ss_pred CCCchHHHHHHHHH
Confidence 33334555555443
No 258
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.65 E-value=85 Score=29.91 Aligned_cols=114 Identities=12% Similarity=0.134 Sum_probs=72.4
Q ss_pred hhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh---hcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHH
Q 039154 93 TLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL---AAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT 169 (211)
Q Consensus 93 ~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l---~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~ 169 (211)
.+++.++-+||.++..-.-.+...-..+++..++-.-+.+- -+|+.-..|....+.++.++-.++. .....++.++
T Consensus 324 rvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~-~aatvV~~ll 402 (948)
T KOG1058|consen 324 RVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE-VAATVVSLLL 402 (948)
T ss_pred HHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH-HHHHHHHHHH
Confidence 34556667778888877777777766666555443322221 2345566788888888877776654 3567888888
Q ss_pred HhcCCCCHHHHHHHHHhhHHHHhhhCc--hhhHHHHHHHH
Q 039154 170 QLCQDDMPMVRRSAASNLRKFAATVEP--AHLKTDIMSIF 207 (211)
Q Consensus 170 ~L~~D~~~~VR~aaa~~l~~~~~~~~~--~~~~~~llp~~ 207 (211)
..+.|..+.--.....-+.+....++. ..+.+.++-.|
T Consensus 403 ~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~ 442 (948)
T KOG1058|consen 403 DFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETF 442 (948)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhh
Confidence 889988876655555556666666552 33444444444
No 259
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=73.26 E-value=14 Score=25.77 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHhccccccCccccccccchH---HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhh
Q 039154 59 DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP---LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWF 126 (211)
Q Consensus 59 ~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~---l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l 126 (211)
....-|+.+...++.+.+ ++++........+ |...++ .+..|..|+++-..+.+.++.+++...+
T Consensus 27 ~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~--~~~l~~~al~~W~~fi~~L~~~~l~~ll 94 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALE--IPELREEALSCWNCFIKTLDEEDLGPLL 94 (107)
T ss_pred CCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 344456666666666666 4443332222222 222222 2366777777777777777766554443
No 260
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=72.83 E-value=6.3 Score=30.11 Aligned_cols=99 Identities=11% Similarity=0.046 Sum_probs=68.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhc
Q 039154 96 TVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLC 172 (211)
Q Consensus 96 ~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~ 172 (211)
-|+--.+|.+|.+++..+...+....--..++..+..=.+| ...+|.-+...+..++...+.. ..+.+.+.|...+
T Consensus 37 vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 37 VDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp EEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 57778999999999999988876654445556666666677 8899999999999988777665 1345666666555
Q ss_pred ----CCC--------CHHHHHHHHHhhHHHHhhhC
Q 039154 173 ----QDD--------MPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 173 ----~D~--------~~~VR~aaa~~l~~~~~~~~ 195 (211)
++. ..+.-+++.+....+...++
T Consensus 116 ~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 116 SKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp H----TTS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred hccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 333 23566777777777766664
No 261
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=72.07 E-value=53 Score=26.88 Aligned_cols=55 Identities=36% Similarity=0.449 Sum_probs=36.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-cchhhchhhhhhhcCCChHHHHHHHHHHHh
Q 039154 9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGE-ERTPKELIPFLSANNDDDDEVLLAMAEELG 72 (211)
Q Consensus 9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~-~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~ 72 (211)
.=|..++-.++.||...| .+. +.+|. .-..++|+|++..+.+ ++.+-.++.+-|-
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~-------r~lg~~~iv~~DLiPiL~~~~~-~~~l~~~~l~LLV 68 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVR-------RQLGEWNIVQKDLIPILISYKD-DDKLFLACLRLLV 68 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHH-------HHHHHhchhhhhHHHHHHhccC-chHHHHHHHHHHH
Confidence 347888899999998888 333 34444 3467899999998554 4444444444443
No 262
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=71.59 E-value=25 Score=32.36 Aligned_cols=101 Identities=10% Similarity=-0.032 Sum_probs=76.5
Q ss_pred HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHHH
Q 039154 91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELR 165 (211)
Q Consensus 91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~ 165 (211)
+..-..|-++.+|.-|..++..-++..|.=.++-..+.....+..|.+-.||..+.+.++.++...+.. +.+.+.
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk 359 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFK 359 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 444556778888999999999888888776666667777777888999999999999999998877653 334444
Q ss_pred HHHHH-hcCCCCHHHHHHHHHhhHHHHh
Q 039154 166 SIYTQ-LCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 166 ~~~~~-L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
...+. ++.|.+- ||..+.+.+..+-.
T Consensus 360 ~rILE~~r~D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 360 DRILEFLRTDSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHhhccch-hhHHHHHHHHHHHH
Confidence 44444 4556666 99999998877654
No 263
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=71.22 E-value=38 Score=24.88 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=39.8
Q ss_pred chhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc----ccccchHHhhhccc------hhhHHHHHHHHHHHHHHhh
Q 039154 48 ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH----AHVLLPPLETLCTV------EETCMRDKAVESLCRIGSQ 116 (211)
Q Consensus 48 ~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~----~~~llp~l~~l~~d------~~~~VR~~a~~~l~~l~~~ 116 (211)
+-+-.+.. +++.++.|-.-+..-|..+++..|...+ ...++.-+..++++ ....||..+..-+..-...
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34444454 7777777777777777777777664221 12233334444432 2456666666666666655
Q ss_pred cC
Q 039154 117 MR 118 (211)
Q Consensus 117 l~ 118 (211)
|+
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 54
No 264
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.18 E-value=48 Score=33.61 Aligned_cols=152 Identities=18% Similarity=0.099 Sum_probs=82.6
Q ss_pred cCCChHHHHHHHHHHHhccccccCccc--cccccchHHhhhccch---hhHHHHHHHHHHHHHHhhc----ChhHHHHhh
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVE--HAHVLLPPLETLCTVE---ETCMRDKAVESLCRIGSQM----RESDLVDWF 126 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~--~~~~llp~l~~l~~d~---~~~VR~~a~~~l~~l~~~l----~~~~~~~~l 126 (211)
+.-+--+||+.--+++-.+.+..|..- .+..++..+..+..-. +..+-.-+..+|.-++..+ +.+ +-..+
T Consensus 851 ~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~s-ci~~l 929 (1610)
T KOG1848|consen 851 NSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTS-CILDL 929 (1610)
T ss_pred hcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChH-HHHHH
Confidence 445566788877788877777766421 1555555555443322 3333334455555554443 222 22233
Q ss_pred HHHHHHhhc---CCC---------chHHHhHHh------------HHH-hhccCCCh-----H-HHHHHHHHHHHhcCCC
Q 039154 127 IPLVKRLAA---GEW---------FTARVSACG------------LFH-IAYPSAPD-----I-LKTELRSIYTQLCQDD 175 (211)
Q Consensus 127 ~p~i~~l~~---d~~---------~~vR~~~a~------------~l~-~l~~~~~~-----~-~~~~l~~~~~~L~~D~ 175 (211)
+..+...+. |-+ |.|--.... ... .++....- + .+-.++..+.++|.|+
T Consensus 930 idtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds 1009 (1610)
T KOG1848|consen 930 IDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS 1009 (1610)
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc
Confidence 333333322 221 443222211 111 11221111 1 4667888999999999
Q ss_pred CHHHHHHHHHhhHHHHhhhC----c----hhhHHHHHHHHH
Q 039154 176 MPMVRRSAASNLRKFAATVE----P----AHLKTDIMSIFE 208 (211)
Q Consensus 176 ~~~VR~aaa~~l~~~~~~~~----~----~~~~~~llp~~~ 208 (211)
-++||..|++.+=.+....| + +-+...++|++.
T Consensus 1010 r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd 1050 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLD 1050 (1610)
T ss_pred hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhc
Confidence 99999999999988877655 3 234456777765
No 265
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=69.96 E-value=1e+02 Score=29.37 Aligned_cols=141 Identities=12% Similarity=0.023 Sum_probs=80.8
Q ss_pred hchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch-hhHHHHHHHHHHHHHHhh-c-------
Q 039154 47 KELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCMRDKAVESLCRIGSQ-M------- 117 (211)
Q Consensus 47 ~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~-l------- 117 (211)
++++..+.+..|.++.+|..|-..|.++.+.-| ++.-.+.-+.+|+ ...||.+|+--+++=... -
T Consensus 3 ~ellqcf~qTldada~~rt~AE~~Lk~leKqPg------Fv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~ 76 (970)
T COG5656 3 EELLQCFLQTLDADAGKRTIAEAMLKDLEKQPG------FVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDG 76 (970)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHhhcCCc------HHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCC
Confidence 455566666556677777777777777665322 3333444455554 456666665444432221 1
Q ss_pred ----ChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc-CCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 118 ----RESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP-SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 118 ----~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~-~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
.+...++.++.-+...+....-..|.+--.++..+.. ....+.+. +.|.-.+|+...+..+--+..-.+.++.+
T Consensus 77 i~~Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfk 155 (970)
T COG5656 77 IKADEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFK 155 (970)
T ss_pred CCCcccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHH
Confidence 1134556666666666555555556544444433332 23333444 77777788888877777777777777777
Q ss_pred hh
Q 039154 193 TV 194 (211)
Q Consensus 193 ~~ 194 (211)
..
T Consensus 156 ay 157 (970)
T COG5656 156 AY 157 (970)
T ss_pred HH
Confidence 65
No 266
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=68.59 E-value=6.1 Score=20.12 Aligned_cols=14 Identities=43% Similarity=0.570 Sum_probs=8.6
Q ss_pred HHHHHHHhhHHHHh
Q 039154 179 VRRSAASNLRKFAA 192 (211)
Q Consensus 179 VR~aaa~~l~~~~~ 192 (211)
||.+|+..|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 56777777766555
No 267
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=67.60 E-value=21 Score=23.16 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhh-cChhHHH-HhhHHHHHHhhc-CCCchHHHhHHhHHHhhccCC
Q 039154 103 RDKAVESLCRIGSQ-MRESDLV-DWFIPLVKRLAA-GEWFTARVSACGLFHIAYPSA 156 (211)
Q Consensus 103 R~~a~~~l~~l~~~-l~~~~~~-~~l~p~i~~l~~-d~~~~vR~~~a~~l~~l~~~~ 156 (211)
.++|+-+++.++.. .+.+.+. ..+++.+.++++ ++.|.+|-.|-+.++-++...
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 35666777777665 3444444 357777877776 567888888888888776653
No 268
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=66.39 E-value=72 Score=26.19 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=61.3
Q ss_pred cccccchHHhhhccchh-hHHHHHHHHHHHHHHhhcChhHH----HHhhHHHHHHhhcCCCchHHHhHH-----------
Q 039154 83 HAHVLLPPLETLCTVEE-TCMRDKAVESLCRIGSQMRESDL----VDWFIPLVKRLAAGEWFTARVSAC----------- 146 (211)
Q Consensus 83 ~~~~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l~~~~~----~~~l~p~i~~l~~d~~~~vR~~~a----------- 146 (211)
.--++.|.+..-.+... +..|..+...++.+.+.-+++.+ ...++|...+-.+-.+.-.|..+.
T Consensus 92 iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~ 171 (262)
T PF04078_consen 92 IPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDV 171 (262)
T ss_dssp GGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHH
T ss_pred chhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchh
Confidence 44567888887777776 67999999999999987666643 244667766655544444444443
Q ss_pred ----------------hHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 147 ----------------GLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 147 ----------------~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
..++.+...+..+ ..+.++.+|.+|++++. .|.+..+.+++.
T Consensus 172 GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr--ar~aL~~~LP~~ 233 (262)
T PF04078_consen 172 GLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR--AREALRQCLPDQ 233 (262)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT--HHHHHHHHS-GG
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH--HHHHHHHhCcHH
Confidence 3333333322222 45778888888887764 455555566553
No 269
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.38 E-value=30 Score=32.98 Aligned_cols=136 Identities=11% Similarity=-0.017 Sum_probs=85.7
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhh---------cChhHHHHhh
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQ---------MRESDLVDWF 126 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~---------l~~~~~~~~l 126 (211)
+..+++.|++-|-.+|.+.-..-| +...+..++.+.. .+-+||..|+-.+++=... +++|+ +.++
T Consensus 9 Ats~d~~v~k~AE~qLr~WEtqPG---F~~~L~sI~l~~t--~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EE-K~~i 82 (978)
T KOG1993|consen 9 ATSQDHIVVKPAEAQLRQWETQPG---FFSKLYSIFLSKT--NDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEE-KDFI 82 (978)
T ss_pred hcCCCcccchhHHHHHHhhccCCc---HHHHHHHHHhccc--cceeeeeehhhhHhcchhHHhhcCCcccCCHHH-HHHH
Confidence 455566688888777776544222 3444444433333 3377888777666654443 34443 2233
Q ss_pred HHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCC----CHHHHHHHHHhhHHHHhhhCch
Q 039154 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDD----MPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 127 ~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~----~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
=-.+......++..+-...|-.++.++..--+..|.+|+|-+.+.+++. +..+-.-+.-.++.+.+.++..
T Consensus 83 R~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~ 157 (978)
T KOG1993|consen 83 RCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATK 157 (978)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 2223333345555666666777777766544446889999999998888 8888888888899998888753
No 270
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=66.12 E-value=50 Score=27.07 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 160 LKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 160 ~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
..+..+.+|++|+.+ |..|.+....+++-
T Consensus 234 llKhviRcYlrLsdn--prar~aL~~clPd~ 262 (293)
T KOG3036|consen 234 LLKHVIRCYLRLSDN--PRARAALRSCLPDQ 262 (293)
T ss_pred HHHHHHHHHHHhcCC--HHHHHHHHhhCcch
Confidence 457788888888765 46677777777653
No 271
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.06 E-value=1.2e+02 Score=28.40 Aligned_cols=164 Identities=9% Similarity=0.080 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHH
Q 039154 29 SIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAV 107 (211)
Q Consensus 29 a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~ 107 (211)
|++-+..+..+.+.-...+.++-.+.. .+|....|+..+++.+..+.+.=++....-.++-++..+.+-.+..|+..++
T Consensus 305 av~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK~rn~~v~~~~~ 384 (704)
T KOG2153|consen 305 AVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIVRIINSLLKTRNYEVLPDMI 384 (704)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhhhhcccchhhHH
Confidence 444455555555555667777877777 8888888999999999887764333333334555566666666666665555
Q ss_pred HHHHHHHhh--------------------------cCh--------------------------------hHHHHhhHHH
Q 039154 108 ESLCRIGSQ--------------------------MRE--------------------------------SDLVDWFIPL 129 (211)
Q Consensus 108 ~~l~~l~~~--------------------------l~~--------------------------------~~~~~~l~p~ 129 (211)
..+..+--. +++ .++-+.++-.
T Consensus 385 ~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~lskK~RK~kKe~~ki~rE~reaea~e~aeek~k~~sEiLkiVFti 464 (704)
T KOG2153|consen 385 TTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSLSKKERKRKKERNKIEREMREAEAEESAEEKMKKQSEILKIVFTI 464 (704)
T ss_pred HHHHhcchhhhccchhhhccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHH
Confidence 544433111 000 0111223333
Q ss_pred HHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 130 VKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
..+..+++..++=-++-..++.+......++..++...+-+++.|.+.++|.+...--..|.-
T Consensus 465 YFrILkn~~~tll~~vlEGlakf~h~invef~~dll~vlk~ll~d~~~~~re~l~cvqtaf~I 527 (704)
T KOG2153|consen 465 YFRILKNDRYTLLGAVLEGLAKFAHLINVEFLGDLLKVLKELLEDIELSYREALLCVQTAFCI 527 (704)
T ss_pred HHHHHhcchhhHHHHHHhhHHHHhhhccHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 344445555444445556666666666677888999999999999999998876655444443
No 272
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.90 E-value=25 Score=30.21 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC--cchhhchhhhhhh-cCCChHHHHHHHHHHHhc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGE--ERTPKELIPFLSA-NNDDDDEVLLAMAEELGV 73 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~--~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~ 73 (211)
+..++..+++.+...|..+...+.- +...++ ..-....-+.+.. +.|.+++||+.+++.|.+
T Consensus 9 ~~~~i~~~~~a~~~eR~~~A~~l~~-~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 9 DQDLIRLLEEASSGERALAARVLAF-ASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHH-HHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 5678889999999999887777743 444444 2233344455556 789999999999999976
No 273
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=64.57 E-value=73 Score=26.18 Aligned_cols=131 Identities=14% Similarity=0.072 Sum_probs=71.9
Q ss_pred HHH-HHHHHHHHHHHHhCCc------chhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccCcccc-----ccccchH
Q 039154 25 LRL-NSIRRLSTIARALGEE------RTPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGGVEH-----AHVLLPP 90 (211)
Q Consensus 25 ~R~-~a~~~l~~ia~~lg~~------~~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~~~~-----~~~llp~ 90 (211)
.|+ +|+..+..+|..=... ...-.|.||+.. .+. +.+.+|.+.-..+|.+++.-. .+. .+.++|+
T Consensus 65 nRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~-~evi~fLl~tEiipl 143 (262)
T PF04078_consen 65 NRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDD-PEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT---HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCc-HHHHHHHHhhchHHH
Confidence 454 3445555666421111 233456688877 443 356799999888888887322 222 2445677
Q ss_pred HhhhccchhhHHHHHHHHHHHHHHhhc-Ch-------h---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154 91 LETLCTVEETCMRDKAVESLCRIGSQM-RE-------S---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (211)
Q Consensus 91 l~~l~~d~~~~VR~~a~~~l~~l~~~l-~~-------~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~ 156 (211)
.-...+-.+.-.+-.|...+.++...- |- + .+...+-.++..+.++++.|.=+.+..+.-.++..-
T Consensus 144 cLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 144 CLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 666666666667777777777764431 11 1 223334556666777777776666666666665543
No 274
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=64.11 E-value=63 Score=28.67 Aligned_cols=96 Identities=19% Similarity=0.117 Sum_probs=68.7
Q ss_pred chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH--HH--HHHHHHHHHhc
Q 039154 97 VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LK--TELRSIYTQLC 172 (211)
Q Consensus 97 d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~--~~--~~l~~~~~~L~ 172 (211)
|.-..-|..|+++|+.++..++.+......-|.+....++++..-|..++-.+.+.+...... .. ..+.+.+...+
T Consensus 98 d~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 98 DVVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 344667999999999999999888877777777888888988888988888888877665543 12 46667777766
Q ss_pred CCCCH-----------HHHHHHHHhhHHHHh
Q 039154 173 QDDMP-----------MVRRSAASNLRKFAA 192 (211)
Q Consensus 173 ~D~~~-----------~VR~aaa~~l~~~~~ 192 (211)
+++.+ .||..|-.-+..+..
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~ 208 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRD 208 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64443 455555544444433
No 275
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=63.94 E-value=81 Score=25.87 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=17.3
Q ss_pred HHHhHHhHHHhhccCCChH--HHHHHHHHHHHhcCCCCH
Q 039154 141 ARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMP 177 (211)
Q Consensus 141 vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~D~~~ 177 (211)
+|..+-..+..+.+...-. ...+++....++++.+-+
T Consensus 204 ~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~ 242 (262)
T PF14225_consen 204 LRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLW 242 (262)
T ss_pred HHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccH
Confidence 4555555554444443322 334455555555555444
No 276
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=63.71 E-value=18 Score=33.09 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=54.1
Q ss_pred ccchHHhhhcc-chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHH----HHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154 86 VLLPPLETLCT-VEETCMRDKAVESLCRIGSQMRESDLVDWFIPL----VKRLAAGEWFTARVSACGLFHIAYPSAP 157 (211)
Q Consensus 86 ~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~----i~~l~~d~~~~vR~~~a~~l~~l~~~~~ 157 (211)
.++..+..+++ ...+.+|-+.++=+..+++.+-++..++.+.|. +..+..|.+|-++..+.+.|+.+++.-+
T Consensus 479 qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 479 QVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 34444555553 445668999999999999998877666665554 4567889999999999999999987654
No 277
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=63.59 E-value=57 Score=23.98 Aligned_cols=80 Identities=11% Similarity=0.166 Sum_probs=54.7
Q ss_pred HHHhhcCCCchHHHhHHhHHHhhccCCChHH-----HHHHHHH-HHHhcCC---CCHHHHHHHHHhhHHHHhhhCchhhH
Q 039154 130 VKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSI-YTQLCQD---DMPMVRRSAASNLRKFAATVEPAHLK 200 (211)
Q Consensus 130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-----~~~l~~~-~~~L~~D---~~~~VR~aaa~~l~~~~~~~~~~~~~ 200 (211)
-+++....+.+|-..+..++..+...+|..+ ...|... +.+++.+ ....||.-+..-+...+..|+.+--.
T Consensus 44 kkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l 123 (141)
T cd03565 44 KKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDL 123 (141)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccc
Confidence 3445445566666667888888888888762 3567775 7888764 34599999999999999999754323
Q ss_pred HHHHHHHHh
Q 039154 201 TDIMSIFED 209 (211)
Q Consensus 201 ~~llp~~~~ 209 (211)
..+--.++.
T Consensus 124 ~~i~~~y~~ 132 (141)
T cd03565 124 TGVVEVYEE 132 (141)
T ss_pred hHHHHHHHH
Confidence 344444433
No 278
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=63.12 E-value=45 Score=22.62 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=39.0
Q ss_pred ccchHHhhhccchh--hHHHHHHHHHHHHHHh-hcChhHHHHhhHHHHHHhhcCCCc--hHHHhHHhHH
Q 039154 86 VLLPPLETLCTVEE--TCMRDKAVESLCRIGS-QMRESDLVDWFIPLVKRLAAGEWF--TARVSACGLF 149 (211)
Q Consensus 86 ~llp~l~~l~~d~~--~~VR~~a~~~l~~l~~-~l~~~~~~~~l~p~i~~l~~d~~~--~vR~~~a~~l 149 (211)
..+.+|.++.+|.. ..||.+|-++.-.+-+ ..++.-.....+..+...++|++- ..|+..=..+
T Consensus 17 q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~iw~vi 85 (93)
T COG1698 17 QVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHARTLIWNVI 85 (93)
T ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34455666666664 4577777777766655 344445556667777778888773 4555544443
No 279
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.79 E-value=13 Score=35.87 Aligned_cols=84 Identities=18% Similarity=0.120 Sum_probs=59.2
Q ss_pred HhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh-------hcCCCchHHHhHHhHHHhhccCCChH----
Q 039154 91 LETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL-------AAGEWFTARVSACGLFHIAYPSAPDI---- 159 (211)
Q Consensus 91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l-------~~d~~~~vR~~~a~~l~~l~~~~~~~---- 159 (211)
-..++++++-.+|.+|.+.|......+.... +.++|.+... ..++..-+=..|+.++..++...|.-
T Consensus 808 ~~~~LS~e~l~irvkaLdvl~~gl~~La~~~--n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR 885 (1014)
T KOG4524|consen 808 GIHLLSHESLRIRVKALDVLSLGLPLLATYH--NLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASR 885 (1014)
T ss_pred HHHHhcchhHHHHHHHHHHHHhccHHHhccc--hhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3458899999999999999988877776544 6666666443 23333334445666666666666653
Q ss_pred HHHHHHHHHHHhcCCCC
Q 039154 160 LKTELRSIYTQLCQDDM 176 (211)
Q Consensus 160 ~~~~l~~~~~~L~~D~~ 176 (211)
+.+++.|-...+|+|..
T Consensus 886 ~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 886 FLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788899888998876
No 280
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.51 E-value=93 Score=28.97 Aligned_cols=81 Identities=14% Similarity=0.081 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC-hHHHHHHHHHHHHhcCCCCHHHHHHH
Q 039154 105 KAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DILKTELRSIYTQLCQDDMPMVRRSA 183 (211)
Q Consensus 105 ~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~-~~~~~~l~~~~~~L~~D~~~~VR~aa 183 (211)
.|+.++..+....+.--+.+-++..+.++.+|+.-.+|..||..+-.++..-+ ....-.++..+-.+.+-....|+-.+
T Consensus 304 vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK~rn~~v~~~~ 383 (704)
T KOG2153|consen 304 VAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIVRIINSLLKTRNYEVLPDM 383 (704)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhhhhcccchhhH
Confidence 45556666666555555666777777888888877788888888777765433 22223334444444444444444444
Q ss_pred HH
Q 039154 184 AS 185 (211)
Q Consensus 184 a~ 185 (211)
+.
T Consensus 384 ~~ 385 (704)
T KOG2153|consen 384 IT 385 (704)
T ss_pred HH
Confidence 33
No 281
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=61.14 E-value=30 Score=30.86 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=56.9
Q ss_pred chhhchhhhhhh--cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHH-hhcChh
Q 039154 44 RTPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIG-SQMRES 120 (211)
Q Consensus 44 ~~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~-~~l~~~ 120 (211)
..++.+.|++.+ ..++.+||-+.+ .. +|.++...-++..+..|+-|....-|+.|..-|..++ +.++++
T Consensus 343 ~Fkk~~~~IIqEYFlsgDt~Evi~~L----~D----Ln~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fste 414 (645)
T KOG0403|consen 343 AFKKDLTPIIQEYFLSGDTPEVIRSL----RD----LNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTE 414 (645)
T ss_pred HHHHhhHHHHHHHHhcCChHHHHHHH----HH----cCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHH
Confidence 467888999999 778999986655 33 4445666666777888999998899999999999886 556776
Q ss_pred HHHHhhH
Q 039154 121 DLVDWFI 127 (211)
Q Consensus 121 ~~~~~l~ 127 (211)
++.+-+.
T Consensus 415 Dv~~~F~ 421 (645)
T KOG0403|consen 415 DVEKGFD 421 (645)
T ss_pred HHHHHHH
Confidence 6554433
No 282
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=60.42 E-value=1e+02 Score=27.33 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=25.7
Q ss_pred HHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154 178 MVRRSAASNLRKFAATVEPAHLKTDIMSIFEDL 210 (211)
Q Consensus 178 ~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L 210 (211)
.-|+.|-..|..++..||++.+ +-+|.++++
T Consensus 410 I~RrGA~~aL~~l~~~FG~~Lf--~~lP~Lw~~ 440 (441)
T PF12054_consen 410 IQRRGAELALEQLAKRFGSSLF--EKLPKLWEC 440 (441)
T ss_pred HHhcCHHHHHHHHHHHHhHHHH--HhhhHHHhh
Confidence 5788999999999999999876 557777764
No 283
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=60.38 E-value=38 Score=28.83 Aligned_cols=94 Identities=11% Similarity=0.095 Sum_probs=52.3
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE 163 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~ 163 (211)
...++....-+.++++++ =+...+++..+....+++...+.+..++.+++..++-..-..+. .
T Consensus 45 l~~ii~~c~v~~k~~ekd-le~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~~~l~L----------------~ 107 (378)
T KOG2753|consen 45 LLMIIEACDVLAKIPEKD-LECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKTASLRL----------------Q 107 (378)
T ss_pred HHHHHHHhHHhhcCCcch-HHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCCcccHH----------------H
Confidence 334444444455555555 45556677777777777777777777777776655532111111 1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 164 LRSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
++-.+.+....+.| +|-....++.+++...+
T Consensus 108 vLsnLfn~~d~~~~-aR~~Vy~~lv~la~~~~ 138 (378)
T KOG2753|consen 108 VLSNLFNGVDKPTP-ARYQVYMSLVTLAASCK 138 (378)
T ss_pred HHHHHHhccCCCch-HHHHHHHHHHHHHhhcc
Confidence 22222334444444 77777777777766554
No 284
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=59.96 E-value=1.1e+02 Score=25.89 Aligned_cols=139 Identities=16% Similarity=0.063 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHHHHH-------hCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--cccccccchH
Q 039154 21 DDIQLRLNSIRRLSTIARA-------LGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPP 90 (211)
Q Consensus 21 ~~~~~R~~a~~~l~~ia~~-------lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~ 90 (211)
+-|+.|..--+.+..+... ++++..+ .++-.+.- +++.+.+|-....+.+..+.+.+.. ++..
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~-~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~------ 204 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK-LVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFA------ 204 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHH------
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHH------
Confidence 4588888777777666653 3444443 33333333 7888888888888888777765543 0100
Q ss_pred HhhhccchhhHHHHHHHHHHHHHHhhc-------ChhHHHHhhHHHHHH----hhcCCCch--------HHHhHHhHHHh
Q 039154 91 LETLCTVEETCMRDKAVESLCRIGSQM-------RESDLVDWFIPLVKR----LAAGEWFT--------ARVSACGLFHI 151 (211)
Q Consensus 91 l~~l~~d~~~~VR~~a~~~l~~l~~~l-------~~~~~~~~l~p~i~~----l~~d~~~~--------vR~~~a~~l~~ 151 (211)
+..-+..-...+..+...+ +.+.....+..++.- ..+.+.|. ++...+..+.+
T Consensus 205 --------~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~ 276 (319)
T PF08767_consen 205 --------NQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSE 276 (319)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHH
Confidence 1122233333333333332 222222233333321 22333333 67778888888
Q ss_pred hccCCChHHHHHHHHHHHHhcCC
Q 039154 152 AYPSAPDILKTELRSIYTQLCQD 174 (211)
Q Consensus 152 l~~~~~~~~~~~l~~~~~~L~~D 174 (211)
..+.+.++....++.-+.+..+|
T Consensus 277 ~Fp~l~~~qi~~fv~~Lf~~~~d 299 (319)
T PF08767_consen 277 AFPNLSPKQIENFVQGLFELNND 299 (319)
T ss_dssp H-TTS-HHHHHHHHHHHHHTTT-
T ss_pred hCCCCCHHHHHHHHHHHHHhcCC
Confidence 88888877666666667777775
No 285
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=58.44 E-value=1.1e+02 Score=26.71 Aligned_cols=86 Identities=7% Similarity=0.058 Sum_probs=53.0
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCC-CCHHHHHHHHHhhHHHHhhhCch
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQD-DMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D-~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
+..+..|.+-.+.....|-.-+..++..+...+|+. .-.+|...+..++.| ..+.|+.....-+.+++..|..|
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 344444544445555556556666666666666665 234677777778884 34888888888888888877655
Q ss_pred hhHHHHHHHHHh
Q 039154 198 HLKTDIMSIFED 209 (211)
Q Consensus 198 ~~~~~llp~~~~ 209 (211)
--.+.+.-++++
T Consensus 124 p~lsLi~~l~~k 135 (462)
T KOG2199|consen 124 PSLSLISALYKK 135 (462)
T ss_pred cchhHHHHHHHH
Confidence 434444444443
No 286
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=58.18 E-value=51 Score=31.04 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=64.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchh-----hhhhh-cCCChHHHHHHHHHHHhccccccCccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELI-----PFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA 84 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~-----p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~ 84 (211)
+..-+..|.+.++.+..+|...+..++ .|.+..+.+.. |-+.. +...+++|.+.++-+|.+++- |.....
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlc--fgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf--~~~~~~ 310 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLC--FGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVF--GKSTDS 310 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHH--hhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhc--ccCCcc
Confidence 556677778999888888888888775 55555555443 55666 788999999999999998864 333211
Q ss_pred ccc-------chHHhhhccc-hhhHHHHHHHHHHHHH
Q 039154 85 HVL-------LPPLETLCTV-EETCMRDKAVESLCRI 113 (211)
Q Consensus 85 ~~l-------lp~l~~l~~d-~~~~VR~~a~~~l~~l 113 (211)
..+ +|.+..++.. .+.+||+.+...|-++
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNL 347 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNL 347 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcc
Confidence 111 4555555554 3556666555444433
No 287
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=58.02 E-value=96 Score=24.80 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=59.3
Q ss_pred hHHhhhccchh-hHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCC-CchHHHhHHhHHHhhccCCChHHHHHHHH
Q 039154 89 PPLETLCTVEE-TCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTELRS 166 (211)
Q Consensus 89 p~l~~l~~d~~-~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~-~~~vR~~~a~~l~~l~~~~~~~~~~~l~~ 166 (211)
..+.++.+..+ +.|=...++.+.. .. ..+.+++......++. .|.-|.+.+..+.-.-.. .....+++
T Consensus 88 ~~~~~~i~~~nnW~vvD~la~~~V~-~~------~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~---~~~~~if~ 157 (222)
T COG4912 88 EEYDQWINTVNNWAVVDTLANHFVG-IP------LWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT---LDLLEIFE 157 (222)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhhc-cc------cCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc---cchhHHHH
Confidence 34555555443 5554444444444 11 1244555554444443 455555555554433222 13347999
Q ss_pred HHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 167 IYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 167 ~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
+...++.|.++-||++..=.|.++++...+
T Consensus 158 i~E~~l~d~e~fV~KAigWaLrq~~k~~~e 187 (222)
T COG4912 158 IIELLLGDKEFFVQKAIGWALRQIGKHSNE 187 (222)
T ss_pred HHHHHccChHHHHHHHHHHHHHHHHhhchH
Confidence 999999999999999999999999994443
No 288
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=57.64 E-value=55 Score=27.29 Aligned_cols=83 Identities=13% Similarity=0.156 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhc-ChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHH
Q 039154 105 KAVESLCRIGSQM-RESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSA 183 (211)
Q Consensus 105 ~a~~~l~~l~~~l-~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aa 183 (211)
..++.+..+.+.. +.+++-++++.++..+..++..++. .|..+...-. ...+..|+++++-+++-+...+
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~-----~~~~~~~~~~----~~~~~~fl~ll~~~D~~i~~~a 125 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVE-----LFLELAKQDD----SDPYSPFLKLLDRNDSFIQLKA 125 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHH-----HHHHHHH-TT----H--HHHHHHH-S-SSHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHH-----HHHHhccccc----chhHHHHHHHhcCCCHHHHHHH
Confidence 3455566777777 7788888899889888887764332 2222222211 1246666778888899999999
Q ss_pred HHhhHHHHhhhCc
Q 039154 184 ASNLRKFAATVEP 196 (211)
Q Consensus 184 a~~l~~~~~~~~~ 196 (211)
+..+..++..-+.
T Consensus 126 ~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 126 AFILTSLLSQGPK 138 (312)
T ss_dssp HHHHHHHHTSTTT
T ss_pred HHHHHHHHHcCCc
Confidence 9999999887654
No 289
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=57.63 E-value=63 Score=22.60 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=46.5
Q ss_pred chHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh
Q 039154 139 FTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL 199 (211)
Q Consensus 139 ~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~ 199 (211)
..-|+.+...++.+....|+. ...++.-++..-++ .++.|..+.+.-..++..++.+.+
T Consensus 29 ~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l 90 (107)
T smart00802 29 YNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEEL 90 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHH
Confidence 345788888888888876665 56777778887776 456999999999999999998643
No 290
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.16 E-value=42 Score=33.94 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHhhcChhHHHHh---hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcC
Q 039154 100 TCMRDKAVESLCRIGSQMRESDLVDW---FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQ 173 (211)
Q Consensus 100 ~~VR~~a~~~l~~l~~~l~~~~~~~~---l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~ 173 (211)
...+..|...+..+++..+.+..... ..-.+.+++.|.+-+||...-..+..+...+++. +.+.++|...----
T Consensus 55 ~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~~~ 134 (1312)
T KOG0803|consen 55 ETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGGQF 134 (1312)
T ss_pred hHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhheec
Confidence 45577788888888888777766552 2344567788888888888887777777766665 56777777777777
Q ss_pred CCCHHHHHHHHHhhHHHHh
Q 039154 174 DDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 174 D~~~~VR~aaa~~l~~~~~ 192 (211)
|....|-++|-..+.+...
T Consensus 135 d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 135 DLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred ccchHHHHHHHHHHHhhcC
Confidence 8888888887777765443
No 291
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.06 E-value=1.7e+02 Score=28.51 Aligned_cols=148 Identities=9% Similarity=0.144 Sum_probs=90.3
Q ss_pred CChHHHHHHHHHHHhccccccCccccccccchHHhhhccchh-----hHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHH
Q 039154 58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE-----TCMRDKAVESLCRIGSQMRESDLVDWFIPLVKR 132 (211)
Q Consensus 58 D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~-----~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~ 132 (211)
++-..-|+.+++.+-..-..+| +...+.+...+.++..|.+ +.+=++++.++..+++.++..+- .-+|...+
T Consensus 435 e~F~~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~ 511 (982)
T KOG2022|consen 435 EQFESYRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES--TWIPRLFE 511 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHH
Confidence 3345588888888877777666 5667778888888887776 66778899999999988866421 00111111
Q ss_pred h----------------------------hcCCCc---------------hHHHhHHhHHHhhccCCChH---HHHHHHH
Q 039154 133 L----------------------------AAGEWF---------------TARVSACGLFHIAYPSAPDI---LKTELRS 166 (211)
Q Consensus 133 l----------------------------~~d~~~---------------~vR~~~a~~l~~l~~~~~~~---~~~~l~~ 166 (211)
. .+.+.+ .--..+...+.++|+.+..+ +.+.++.
T Consensus 512 ~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a 591 (982)
T KOG2022|consen 512 TSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLDPYADQFSA 591 (982)
T ss_pred hccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCchHHHHHHH
Confidence 1 111110 00111223355555555444 3333333
Q ss_pred HHHHhcC--CCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHH
Q 039154 167 IYTQLCQ--DDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFE 208 (211)
Q Consensus 167 ~~~~L~~--D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~ 208 (211)
.....+. --.+.+|..+.+++|-+.+...||++..+++-++.
T Consensus 592 ~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin 635 (982)
T KOG2022|consen 592 VCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLIN 635 (982)
T ss_pred HHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Confidence 3333333 23478999999999999999999888877765543
No 292
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.82 E-value=3.4e+02 Score=30.82 Aligned_cols=179 Identities=13% Similarity=0.104 Sum_probs=96.9
Q ss_pred HHHHHHHHHhCCcchh-----hchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccc--------hHHhhhccc
Q 039154 31 RRLSTIARALGEERTP-----KELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL--------PPLETLCTV 97 (211)
Q Consensus 31 ~~l~~ia~~lg~~~~~-----~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll--------p~l~~l~~d 97 (211)
..+..+...++.+..+ ..+-|+..++-+.+..||..+.+.|..+.+.-|.+ ..+.+. |++..-...
T Consensus 1105 ~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~-v~~L~~p~K~~ll~p~f~k~lr~ 1183 (3550)
T KOG0889|consen 1105 DILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKS-VVKLLEPFKDVLLSPIFKKPLRA 1183 (3550)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHhcccccccccc
Confidence 3333333344444433 33445556677888899999999999988865432 222222 222222222
Q ss_pred hhhHHHHHHHHHHHHHHhhcChh-----HHHHhhHHHHHHhhcCC------------------CchHHHhHHhHHHhhcc
Q 039154 98 EETCMRDKAVESLCRIGSQMRES-----DLVDWFIPLVKRLAAGE------------------WFTARVSACGLFHIAYP 154 (211)
Q Consensus 98 ~~~~VR~~a~~~l~~l~~~l~~~-----~~~~~l~p~i~~l~~d~------------------~~~vR~~~a~~l~~l~~ 154 (211)
-...+...-++.... |-.++++ .-.-.+.-.+..++.++ .-+.|.+|.+++.....
T Consensus 1184 ~p~~~qig~vd~~~f-C~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~ 1262 (3550)
T KOG0889|consen 1184 LPFTIQIGHLDAITF-CLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMK 1262 (3550)
T ss_pred CCHHHHhhhHHHHHH-HHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHh
Confidence 222222222222221 2222221 00011111122222221 23457888888776654
Q ss_pred CCCh------HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh---hCchhhHHHHHHHHHhhC
Q 039154 155 SAPD------ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT---VEPAHLKTDIMSIFEDLT 211 (211)
Q Consensus 155 ~~~~------~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~---~~~~~~~~~llp~~~~L~ 211 (211)
...- +++.+++..|++-+.-+.++.-.++...+..+..- ++.|.+++.+=|++-+|+
T Consensus 1263 ~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~ 1328 (3550)
T KOG0889|consen 1263 LSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLS 1328 (3550)
T ss_pred cccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhh
Confidence 4322 16778888888888888888888888777776654 677777777778776653
No 293
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.43 E-value=54 Score=36.38 Aligned_cols=123 Identities=15% Similarity=0.054 Sum_probs=81.2
Q ss_pred cccchHHhhhccchhhHHHHHHHHHHHHHHhhc----Ch------hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154 85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQM----RE------SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (211)
Q Consensus 85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l----~~------~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~ 154 (211)
..+++.+.+-+..++..++..+..++..+.... +. -.....+++.+.++|.|+-|..|..-+..+..++.
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 345788888888999999999999888876653 21 13467788888999999999877543333222222
Q ss_pred CCCh----------------------------------------------------H---HHHHHHHHHHHhcCCCCHHH
Q 039154 155 SAPD----------------------------------------------------I---LKTELRSIYTQLCQDDMPMV 179 (211)
Q Consensus 155 ~~~~----------------------------------------------------~---~~~~l~~~~~~L~~D~~~~V 179 (211)
.+.. + ....++..+..-+.++...|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 2110 0 11224444455556777799
Q ss_pred HHHHHHhhHHHHhhhCchhhHHHHHHHHH
Q 039154 180 RRSAASNLRKFAATVEPAHLKTDIMSIFE 208 (211)
Q Consensus 180 R~aaa~~l~~~~~~~~~~~~~~~llp~~~ 208 (211)
|..+...|..++...|++. ..-+.|+.+
T Consensus 1143 R~~~~~~L~~i~~~s~~~v-~~L~~p~K~ 1170 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSV-VKLLEPFKD 1170 (3550)
T ss_pred HHHHHHHHHHHHHHcCCcH-HHHHHHHHH
Confidence 9999999999999887753 334445443
No 294
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=56.21 E-value=93 Score=27.57 Aligned_cols=165 Identities=14% Similarity=0.093 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhCCc------chhhchhhhhhh-cCCC----hHHHHHHHHHHHhccccccCccccccccchHHhhhccch
Q 039154 30 IRRLSTIARALGEE------RTPKELIPFLSA-NNDD----DDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE 98 (211)
Q Consensus 30 ~~~l~~ia~~lg~~------~~~~~L~p~l~~-~~D~----~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~ 98 (211)
-..++.+-+..... ...+.|+|.+.. ++.| .|.|-.-.+.-+..-. ++...+.-..++..++...
T Consensus 93 FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~----~~~~p~~y~~L~~~Ll~p~ 168 (435)
T PF03378_consen 93 FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP----SSPLPDAYKQLFPPLLSPA 168 (435)
T ss_dssp HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS------S--TTTGGGHHHHTSGG
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CCCCcHHHHHHHHHHcCcc
Confidence 45555555544432 457888899887 5433 4656555444443322 1222223333444445555
Q ss_pred hhHHHHHHHHHHHHHHh----hcChhHH----HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HH-HHHH
Q 039154 99 ETCMRDKAVESLCRIGS----QMRESDL----VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LK-TELR 165 (211)
Q Consensus 99 ~~~VR~~a~~~l~~l~~----~l~~~~~----~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~-~~l~ 165 (211)
-|. |..-+-++.++.+ +-+.... -+-++-.+.+|...+... ...-+++..+...++.+ +. .-+.
T Consensus 169 lWe-~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~ 245 (435)
T PF03378_consen 169 LWE-RRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFT 245 (435)
T ss_dssp GGG-STTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHH
T ss_pred hhc-cCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 554 2233334443333 3333221 234666777887776643 34557777777777775 33 3334
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHH
Q 039154 166 SIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKT 201 (211)
Q Consensus 166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~ 201 (211)
-.|.+|-+-....-++..+.-+.-++...|++.+.+
T Consensus 246 lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~ 281 (435)
T PF03378_consen 246 LLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQ 281 (435)
T ss_dssp HHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 444555556777777777777777777778765443
No 295
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=55.70 E-value=31 Score=24.38 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=16.5
Q ss_pred HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154 122 LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 122 ~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
..++.++++.+-..|++..|+..|...+...+..
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 3444455444444555555555555555444433
No 296
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=55.32 E-value=1.4e+02 Score=26.27 Aligned_cols=95 Identities=9% Similarity=-0.000 Sum_probs=52.7
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh----hHHHHhhHHHHH
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE----SDLVDWFIPLVK 131 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~----~~~~~~l~p~i~ 131 (211)
...+++.+...+|..++.=- +.....+..+++-++..++.|-..|+.-+..+...++. |..+..+...+.
T Consensus 21 nT~enW~~IlDvCD~v~~~~------~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~ 94 (462)
T KOG2199|consen 21 NTSENWSLILDVCDKVGSDP------DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELR 94 (462)
T ss_pred cccccHHHHHHHHHhhcCCC------cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHH
Confidence 44566666666666665521 22334455566666777777777777766666666555 333445556666
Q ss_pred HhhcCC-CchHHHhHHhHHHhhccCC
Q 039154 132 RLAAGE-WFTARVSACGLFHIAYPSA 156 (211)
Q Consensus 132 ~l~~d~-~~~vR~~~a~~l~~l~~~~ 156 (211)
+++++. .-+|+.-......+.+..+
T Consensus 95 al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 95 ALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 666642 2345544444444444433
No 297
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=54.42 E-value=42 Score=22.37 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=15.5
Q ss_pred cchHHhhhc-cchhhHHHHHHHHHHHHHHhhcChh
Q 039154 87 LLPPLETLC-TVEETCMRDKAVESLCRIGSQMRES 120 (211)
Q Consensus 87 llp~l~~l~-~d~~~~VR~~a~~~l~~l~~~l~~~ 120 (211)
++.+++.+. ...+..||+..+.++..+.+..+..
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~ 52 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGEN 52 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH
Confidence 344444442 2224455555555555555554433
No 298
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=54.20 E-value=60 Score=23.93 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=51.4
Q ss_pred cccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHH-HhhccCCChHHHHH
Q 039154 85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTE 163 (211)
Q Consensus 85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l-~~l~~~~~~~~~~~ 163 (211)
+.+-..+..++.+.+..|+..|.+++...-.. .+..+ -..+.+|..|..|+ -...... ..=...+.++.+..
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~----~l~pY-~d~L~~Lldd~~fr--deL~~f~~~~~~~~I~~ehR~~ 88 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDP----YLTPY-KDNLENLLDDKTFR--DELTTFNLSDESSVIEEEHRPE 88 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----HHHhH-HHHHHHHcCcchHH--HHHHhhcccCCcCCCCHHHHhH
Confidence 44566778899999999999999999875442 22222 23456677777653 3332222 11122355667888
Q ss_pred HHHHHHHhcC
Q 039154 164 LRSIYTQLCQ 173 (211)
Q Consensus 164 l~~~~~~L~~ 173 (211)
++|++++++-
T Consensus 89 l~pvvlRILy 98 (141)
T PF07539_consen 89 LMPVVLRILY 98 (141)
T ss_pred HHHHHHHHHH
Confidence 8888888753
No 299
>PHA02922 hypothetical protein; Provisional
Probab=54.20 E-value=86 Score=23.11 Aligned_cols=116 Identities=12% Similarity=0.075 Sum_probs=72.5
Q ss_pred CChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCC
Q 039154 58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGE 137 (211)
Q Consensus 58 D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~ 137 (211)
..++.||.++.+-+-=-..-....+..-.+.-.|+.+-+|.+..-++ .+..+.+.++-+.+ +.-..+|+-+...+
T Consensus 21 ~~~DdI~~~i~DYiyWSs~~~r~Re~AG~vf~vleSFr~DAe~VFg~----nlr~fVk~~s~~gv-~~s~~~I~c~l~~d 95 (153)
T PHA02922 21 NTVADVRHCLTEYILWVSHRWTHRESAGSLYRLLISFRTDATELFGS----ELKEFSDSLPWDNI-DNCVEIIKCFIRND 95 (153)
T ss_pred cccchHHHHHHHHHHHhhccccccCccchHHHHHHHHHhhHHHHHHH----HHHHHHHhCchhhh-HHHHHHHHHHhccc
Confidence 45778999998888543333444455667788888887777665553 33344444443333 33344566666655
Q ss_pred Cc-hHHHhH--HhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHH
Q 039154 138 WF-TARVSA--CGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPM 178 (211)
Q Consensus 138 ~~-~vR~~~--a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~ 178 (211)
++ +.|.++ ..++...+...|.+ ...+.+.++.+|++|.+..
T Consensus 96 n~ktirEa~AiIGLcA~aAeYWGgePt~~S~~vL~Ll~~LLsd~D~~ 142 (153)
T PHA02922 96 SMKTAKELRAIIGLCTQSAIVSGRVFNDKYIDILLMLRKILNENDYL 142 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhchhHHH
Confidence 55 455544 35566666666665 3567888899999998754
No 300
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=53.78 E-value=96 Score=29.73 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=39.9
Q ss_pred hhchhhhhhh-cCCChHH-HHHHHHHHHhccccccCccccccccc-hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH
Q 039154 46 PKELIPFLSA-NNDDDDE-VLLAMAEELGVFIPYVGGVEHAHVLL-PPLETLCTVEETCMRDKAVESLCRIGSQMRESDL 122 (211)
Q Consensus 46 ~~~L~p~l~~-~~D~~~~-VR~~~a~~L~~l~~~ig~~~~~~~ll-p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~ 122 (211)
-+++.|++.. ..|.+-- |..-+.+.++. +. -+.|+ ++...+........-.-++..+-+.+.....+.+
T Consensus 545 v~~l~~~~~~li~dqngNHviqKci~~~~~-------~~-~~fif~~~~~~~~~is~~r~Gs~vvq~~le~~~~~~~~~~ 616 (777)
T COG5099 545 VEELRPYCLQLIKDQNGNHVIQKCIEKFNK-------EK-NQFIFDSINENLYDLSTHRYGSRVVQRCLENCNSEDKENL 616 (777)
T ss_pred HHHhhhhhHHHHHhccCCHHHHHHHHhcCc-------cc-cchHHHHHHhhhHhhhccccccHHHHHHHHhccHhHHHHH
Confidence 3555666666 6666555 55555444432 11 11221 1122222222222223344444444444455555
Q ss_pred HHhhHHHHHHhhcCCC
Q 039154 123 VDWFIPLVKRLAAGEW 138 (211)
Q Consensus 123 ~~~l~p~i~~l~~d~~ 138 (211)
.+.|++..+.|+.|.+
T Consensus 617 ~~~Ii~~~~~L~~dq~ 632 (777)
T COG5099 617 VEEIISNSKYLSQDQY 632 (777)
T ss_pred HHHHHHHHHhhccCCc
Confidence 6666666666666654
No 301
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=52.91 E-value=37 Score=22.09 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGE 42 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~ 42 (211)
|..+....+|-.+.+|..|++.|..|...++.
T Consensus 41 i~El~~L~RSsv~~QR~~al~~L~~Il~~~~~ 72 (73)
T PF08620_consen 41 IQELFHLSRSSVPSQRCIALQTLGRILYRAGK 72 (73)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhC
Confidence 88899999999999999999999998776653
No 302
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.66 E-value=71 Score=21.67 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=14.4
Q ss_pred HHhhHHHHHHhhcCCCc--hHHHhHHhHH
Q 039154 123 VDWFIPLVKRLAAGEWF--TARVSACGLF 149 (211)
Q Consensus 123 ~~~l~p~i~~l~~d~~~--~vR~~~a~~l 149 (211)
.+.++..+.+..+|... .+|.++....
T Consensus 15 i~q~~~lL~~Ii~DttVPRNIRraA~~a~ 43 (93)
T COG1698 15 INQVMQLLDEIIQDTTVPRNIRRAAEEAK 43 (93)
T ss_pred HHHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 34455555556666553 4555555443
No 303
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=52.40 E-value=98 Score=26.25 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=26.2
Q ss_pred HHhhHHHHH------HhhcCCC----chHHHhHHhHHHhhccCCChH
Q 039154 123 VDWFIPLVK------RLAAGEW----FTARVSACGLFHIAYPSAPDI 159 (211)
Q Consensus 123 ~~~l~p~i~------~l~~d~~----~~vR~~~a~~l~~l~~~~~~~ 159 (211)
-+.++|.+. +|-+++. +.+|..+|..+.-++..++..
T Consensus 275 ~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 275 LHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 455666663 3445443 579999999998888888876
No 304
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=52.21 E-value=2.4e+02 Score=27.56 Aligned_cols=143 Identities=10% Similarity=-0.031 Sum_probs=91.7
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccc-hhhHHHHHHHHHHHHHHhhcChh------------HH
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV-EETCMRDKAVESLCRIGSQMRES------------DL 122 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~l~~~------------~~ 122 (211)
.+..+|.+++.+-++|.+.-+.= . +-..++.-.++. ..-..|.+|+-.+.+...+.=.+ .+
T Consensus 13 aqs~~p~s~k~AE~~Lrqwe~q~---g---F~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~I 86 (947)
T COG5657 13 AQSPDPPSVKCAEERLRQWEKQH---G---FALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLI 86 (947)
T ss_pred hcCCCCchHhhHHHHHHhhhccc---c---HHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHH
Confidence 67788889999999998854421 1 223333333444 35688999998888876663221 22
Q ss_pred HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc----hh
Q 039154 123 VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP----AH 198 (211)
Q Consensus 123 ~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~----~~ 198 (211)
+..+++++.+.. +. .-...|..+..++..-=++.|+.++|-+.+++++.+..+-......++.+.+.+++ +.
T Consensus 87 R~~l~~lii~s~---n~-l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd~ 162 (947)
T COG5657 87 RDELFSLIISSS---NQ-LQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSDA 162 (947)
T ss_pred HHHHHHHHHccc---ch-HHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccHH
Confidence 445555544332 22 11144555555655544456999999999999998888888888888888888775 34
Q ss_pred hHHHHHHHHH
Q 039154 199 LKTDIMSIFE 208 (211)
Q Consensus 199 ~~~~llp~~~ 208 (211)
.--++.|.+.
T Consensus 163 lf~ei~p~L~ 172 (947)
T COG5657 163 LFLEIAPVLL 172 (947)
T ss_pred HHHHHHHHHH
Confidence 4445555543
No 305
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=52.18 E-value=1.3e+02 Score=24.69 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=79.3
Q ss_pred cccchHHhhhccchh-hHHHHHHHHHHHHHHhhcChhHH----HHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc-CCCh
Q 039154 85 HVLLPPLETLCTVEE-TCMRDKAVESLCRIGSQMRESDL----VDWFIPLVKRLAAGEWFTARVSACGLFHIAYP-SAPD 158 (211)
Q Consensus 85 ~~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l~~~~~----~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~-~~~~ 158 (211)
-++.|.+..-.++.. +-.|..+...++.+.+.-+.+.+ ...++|+..+..+..+.-.+..+..++.++.. ..|-
T Consensus 123 lylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL 202 (293)
T KOG3036|consen 123 LYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGL 202 (293)
T ss_pred hhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccH
Confidence 456677777777765 56899999999999998887743 35689999999999998889999999988743 3332
Q ss_pred H-----------HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 159 I-----------LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 159 ~-----------~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
. ...-|-....+|.+.+++.+-+.+.+..-.+.+
T Consensus 203 ~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 203 YYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 2 123355667778888888877777776655443
No 306
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=52.14 E-value=92 Score=22.84 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=14.3
Q ss_pred chhhhhhh-cC-CChHHHHHHHHHHHhccccccC
Q 039154 48 ELIPFLSA-NN-DDDDEVLLAMAEELGVFIPYVG 79 (211)
Q Consensus 48 ~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig 79 (211)
+.+-.+.+ ++ ..++.|-.-+..-|..+++..|
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG 71 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCG 71 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc
Confidence 33334444 43 2344444444444555555444
No 307
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=50.94 E-value=2.5e+02 Score=27.47 Aligned_cols=139 Identities=13% Similarity=0.038 Sum_probs=86.1
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh------HHHHhhHHH
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES------DLVDWFIPL 129 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~------~~~~~l~p~ 129 (211)
..|+.+-||..++..+-..++.---......++..+.+++.+.+..|-..-+++|..+++.=+.. .+...++..
T Consensus 500 ~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~l 579 (1005)
T KOG2274|consen 500 TMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINL 579 (1005)
T ss_pred ccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHH
Confidence 46788889999999887765210011233445556778888888888888888888877664432 333445566
Q ss_pred HHHhhcCCCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhcCCCC----HHHHHHHHHhhHHHHhhhCc
Q 039154 130 VKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDM----PMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~D~~----~~VR~aaa~~l~~~~~~~~~ 196 (211)
+.+.++|+ -|-.-+-.+|-+++...... ....++|.+++-++-+. +.--..++.-|..+++.-++
T Consensus 580 F~k~s~DP--~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~ 650 (1005)
T KOG2274|consen 580 FLKYSEDP--QVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS 650 (1005)
T ss_pred HHHhcCCc--hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC
Confidence 67778888 23333445555554432222 46778888888877655 44444555555555555544
No 308
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=50.63 E-value=21 Score=23.81 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=44.8
Q ss_pred hchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--cccccccchHHhhhccchhhHHHHHHHHHHH
Q 039154 47 KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVEETCMRDKAVESLC 111 (211)
Q Consensus 47 ~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~ 111 (211)
.-|-|+..- ....+.+||.-+.+.+..+...-|. ..-+..++.++...++|++..+=..|..++.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 344566554 4557889999999998888875442 2246778888888888877766666665543
No 309
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=49.78 E-value=85 Score=21.75 Aligned_cols=67 Identities=12% Similarity=0.080 Sum_probs=44.5
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHH-----HHHHHHHH------hcCCCCHHHHHHHHHhhHHH
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT-----ELRSIYTQ------LCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~-----~l~~~~~~------L~~D~~~~VR~aaa~~l~~~ 190 (211)
..++..+.+-.++.+|++..-+..++..+....|+.+.. .+...+++ .-.|....||..+..-+...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 456666666667779999999999999998888877322 22222222 12466788998887766554
No 310
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=49.54 E-value=24 Score=31.17 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHhccccccC-ccccccc--cchHHhhhccchhhHHHHHHHHHHHHH
Q 039154 60 DDEVLLAMAEELGVFIPYVG-GVEHAHV--LLPPLETLCTVEETCMRDKAVESLCRI 113 (211)
Q Consensus 60 ~~~VR~~~a~~L~~l~~~ig-~~~~~~~--llp~l~~l~~d~~~~VR~~a~~~l~~l 113 (211)
++.+...||.-+|.++++.. |....+. .-..++++++++++.||..|..++.++
T Consensus 367 d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 367 DPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred CcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44555666666666666531 1111111 223478888999999999999998886
No 311
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=49.15 E-value=1.6e+02 Score=24.81 Aligned_cols=79 Identities=15% Similarity=0.069 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHh------hHHHHHHhhcCCCchHHHh--------------------------HHhH
Q 039154 101 CMRDKAVESLCRIGSQMRESDLVDW------FIPLVKRLAAGEWFTARVS--------------------------ACGL 148 (211)
Q Consensus 101 ~VR~~a~~~l~~l~~~l~~~~~~~~------l~p~i~~l~~d~~~~vR~~--------------------------~a~~ 148 (211)
+||...+.=+..+....++....+. +-+.++.+.+|+...|+.. +...
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 8888888888888777766433222 3455566666665444432 3444
Q ss_pred HHhhccCCCh----HHHHHHHHHHHHhcCCCCHHH
Q 039154 149 FHIAYPSAPD----ILKTELRSIYTQLCQDDMPMV 179 (211)
Q Consensus 149 l~~l~~~~~~----~~~~~l~~~~~~L~~D~~~~V 179 (211)
+..++..-++ ...+.....+..+|.|+..+|
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv 243 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGV 243 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcCCCccc
Confidence 4455555555 244555666666666555444
No 312
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=48.72 E-value=1.6e+02 Score=28.70 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=29.6
Q ss_pred cCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154 172 CQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDL 210 (211)
Q Consensus 172 ~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L 210 (211)
|+=+++.||+.|.++| ..+.++.+..+|+|+++.|
T Consensus 620 ~nypD~~VR~fAV~~L----~~Lsdd~l~~YLLqLVQal 654 (1076)
T KOG0904|consen 620 CNYPDPNVRAFAVRCL----EQLSDDDLLQYLLQLVQAL 654 (1076)
T ss_pred CCCCcHHHHHHHHHHH----HhcChhHHHHHHHHHHHHH
Confidence 5678899999999999 5566799999999998754
No 313
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=48.31 E-value=71 Score=24.64 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=9.7
Q ss_pred chhhHHHHHHHHHHHHHH
Q 039154 97 VEETCMRDKAVESLCRIG 114 (211)
Q Consensus 97 d~~~~VR~~a~~~l~~l~ 114 (211)
..-+.||..|..++..+.
T Consensus 18 EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 18 EKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333555555555555555
No 314
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=47.75 E-value=4.2e+02 Score=29.13 Aligned_cols=186 Identities=13% Similarity=0.053 Sum_probs=101.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHh----------cccc-cc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELG----------VFIP-YV 78 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~----------~l~~-~i 78 (211)
++.+-..++|++..+|..+.+.+..--...-. ....+..|.+.. +.+..-+++...+-+.+ .... .-
T Consensus 7 ~~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~-~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ 85 (2341)
T KOG0891|consen 7 LKQYFSGLKSRNKSEQAQAARELFNYVTSELR-ELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGTE 85 (2341)
T ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhcc
Confidence 45566778899988887776666543221111 122333444444 33333344443333332 2222 01
Q ss_pred CccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcC---hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154 79 GGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMR---ESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 79 g~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~---~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
+.....+.+-..+..++...+..+=..+.++++.++-..+ .+.+..+.--.+..+ .+..---|..++-.+.+....
T Consensus 86 ~~~~~~s~~~n~l~~l~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~-~~~~~~~~~~a~~~~~~l~~~ 164 (2341)
T KOG0891|consen 86 HDRKNISRLANYLRYLLPSNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWL-GERQEYRRLAAVLIIKELADN 164 (2341)
T ss_pred cccchhHhHHHHHHHhhccCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh-hhhhhhhhHHHHHhhhhHhhc
Confidence 1122233344445555555566666667777666654433 333333332223333 332222344555666666666
Q ss_pred CChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh
Q 039154 156 APDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH 198 (211)
Q Consensus 156 ~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~ 198 (211)
.+.- ....|+.....-..|+.+.+|-.|+.+++......+.+.
T Consensus 165 ~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~ 210 (2341)
T KOG0891|consen 165 VPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQRE 210 (2341)
T ss_pred CcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhcc
Confidence 6654 345566666666789999999999999999999887765
No 315
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=46.32 E-value=1.1e+02 Score=22.07 Aligned_cols=96 Identities=9% Similarity=-0.006 Sum_probs=61.3
Q ss_pred cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh----HHHHhhHHHHH
Q 039154 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES----DLVDWFIPLVK 131 (211)
Q Consensus 56 ~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~----~~~~~l~p~i~ 131 (211)
..++++..-..+++.+..= +......+..+.+-+++.++.|...|+.-|..+.+..|.. .....++..+.
T Consensus 13 l~~~dw~~~l~icD~i~~~------~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~ 86 (133)
T smart00288 13 LLEEDWELILEICDLINST------PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELV 86 (133)
T ss_pred CCCcCHHHHHHHHHHHhCC------CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHH
Confidence 3456666666666666431 1222234445566666788888888888888888887764 33445666777
Q ss_pred HhhcCCCc-h-HHHhHHhHHHhhccCCC
Q 039154 132 RLAAGEWF-T-ARVSACGLFHIAYPSAP 157 (211)
Q Consensus 132 ~l~~d~~~-~-vR~~~a~~l~~l~~~~~ 157 (211)
++.++..- . ||.-+...+..-+..+.
T Consensus 87 ~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 87 KLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 77666442 2 88888887777666554
No 316
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=46.28 E-value=3.5e+02 Score=27.80 Aligned_cols=181 Identities=14% Similarity=0.111 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHH---HHHHHHhccccccCccccccccchHHhhhccch-
Q 039154 24 QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLL---AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE- 98 (211)
Q Consensus 24 ~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~---~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~- 98 (211)
+.|+-+++++.+-+-.++.......+.|+-.. ..++...+++ ++...+|...+.+.=... +.++..+..+..+.
T Consensus 380 h~~~~~~k~ll~~~vd~~~~s~~~~~~p~s~~~~~~~~~~~~~i~~~l~~~i~~~~k~~swna~-~~~l~r~i~~~~~n~ 458 (1364)
T KOG1823|consen 380 HRRKKTIKQLLEHSVDLVINSCSHYLIPMSLSPPFSCGERYQNILAALTIDIGEIFKHISWNAY-EALLKRYISLLKVNE 458 (1364)
T ss_pred HhhHHHHHHHHhcchHHHhhhhhccccccccCCccccccHHHHHHHHHHhhHHHHhhhccHHHH-HHHHHHHHHHHhcCh
Confidence 46778888888877777777777777887665 2222244444 444455555554432222 23344444444433
Q ss_pred hhHHHHHHHHHHHHHHhhcCh---------------------------hHHHHhhHHHHHHhhc---------CCCchHH
Q 039154 99 ETCMRDKAVESLCRIGSQMRE---------------------------SDLVDWFIPLVKRLAA---------GEWFTAR 142 (211)
Q Consensus 99 ~~~VR~~a~~~l~~l~~~l~~---------------------------~~~~~~l~p~i~~l~~---------d~~~~vR 142 (211)
+..--..+..++..+.-.+.. -..+..+.|.+..+.. +...+-|
T Consensus 459 ~~~k~~v~l~~lv~~~l~~l~~~~~~~~e~~~~l~~~~s~~d~~~~~~~~~~~~l~r~~~di~~is~~l~~r~~~ti~~~ 538 (1364)
T KOG1823|consen 459 NMQKLAVCLIVLVKMALRFLSKQLKDGAESNITLEKFSSSRDEPRSFLPENKAELERTTSDILGISGFLMKRAFKTIRNR 538 (1364)
T ss_pred hHHHHHHHHHHHHHhcccchhhhhccccccccccccccccchhhhhcchhhhHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 222222222222222111100 0112233333332222 1223445
Q ss_pred HhHHhHHHhhccCCChH--HHHHHHHHHHHhc---CCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHH
Q 039154 143 VSACGLFHIAYPSAPDI--LKTELRSIYTQLC---QDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSI 206 (211)
Q Consensus 143 ~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~---~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~ 206 (211)
...+..+-.+-..++.+ ....+=+++++.| .....++|.++=..+.++.+.+||+.. ..+++.
T Consensus 539 ~~~~~~~~~~~~~l~~~~i~~~~L~~illkic~~l~~~s~e~rd~srktl~~i~k~Lg~~yl-~~Vi~e 606 (1364)
T KOG1823|consen 539 LSIAEALVFLVLFLGNAEIVLRNLPSILLDICYLLRSRSAELRDASRKTLAKIIKILGPKYL-YFVIKE 606 (1364)
T ss_pred HHHHHHHHHHHhcccchHHHHhcCcHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHH
Confidence 55555555555566665 2334555666554 588899999999999999999999753 344443
No 317
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=45.68 E-value=1.7e+02 Score=23.92 Aligned_cols=51 Identities=20% Similarity=0.374 Sum_probs=37.5
Q ss_pred hHHhhhccchh--hHHHHHHHHHHHHHHhh--cChhHHHHhhHHHHHH-hhcCCCc
Q 039154 89 PPLETLCTVEE--TCMRDKAVESLCRIGSQ--MRESDLVDWFIPLVKR-LAAGEWF 139 (211)
Q Consensus 89 p~l~~l~~d~~--~~VR~~a~~~l~~l~~~--l~~~~~~~~l~p~i~~-l~~d~~~ 139 (211)
..+..++++++ .-||.+|++++..+... .+.+.+.+++-.++.. +..++++
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSF 169 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchH
Confidence 35667777774 67999999999998765 5667888888888877 4444443
No 318
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=44.64 E-value=2.8e+02 Score=28.46 Aligned_cols=185 Identities=15% Similarity=0.028 Sum_probs=95.5
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154 9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
++++-+..+..|.+-.+|.+. +.+++ ..-...+|...- ++|+.+-.|..+...+..+-.-... +....+
T Consensus 972 ~~V~~l~~~~esg~esvr~~~-all~e--------~~~~ffIal~~~~~nDd~~~~r~ma~~~i~~~~~~~d~-e~~~~~ 1041 (1364)
T KOG1823|consen 972 FMVDNLLYEVESGRESVRFSP-ALLFE--------ILSNFFIALVLVKINDDEPVCREMASMLIKVLYDKEDN-ELFNLL 1041 (1364)
T ss_pred HHHHHhhhhhhcccchhcccH-HHHHH--------HhhccchhhcccccccchHHHHHHHHHHHHHHhCHhhh-HHHhHH
Confidence 456677777777777777222 12211 223455677665 8899999988888776554332211 122223
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhcChhH---------------HHHhhHHHHHHhhcCCCchHHHhHHhHHHhh
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESD---------------LVDWFIPLVKRLAAGEWFTARVSACGLFHIA 152 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~---------------~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l 152 (211)
...+.....-+...=|...+.......+.++.+. .....-|.....-.+-.|.+-...-......
T Consensus 1042 ~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~e~~~~~~~~~~~lek~~~~~~s~~~~~~~~~~~~~~~lfs~lt~~t~~ 1121 (1364)
T KOG1823|consen 1042 ERLLHEWVGVHKRHKRFILVGATGKAEESIGFELTIQLFVLLSVLEKEIIVEVSDPIEAETEEVLFDKVLFSWLTLVTEN 1121 (1364)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHhhccceeeeecccccccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3332222222222222222444444444444432 1222334444444444444332222221111
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh-hHHHHHHH
Q 039154 153 YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH-LKTDIMSI 206 (211)
Q Consensus 153 ~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~-~~~~llp~ 206 (211)
...- ...++-..+..++.-+..+||.++++-.+-+....++.. ....++|.
T Consensus 1122 ikk~---~f~ki~~~v~~~~l~~~~~v~~s~~~lf~~l~a~~~~~e~~~~~i~~~ 1173 (1364)
T KOG1823|consen 1122 IKKG---GFSKIWSRVVGLLLMPHSWVRLSRAQLFGFLFAISDVSELRLRTIIPL 1173 (1364)
T ss_pred HHhc---cHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhcccHHHHHHHHhHHH
Confidence 1111 234566677888888999999999999999888877653 33334443
No 319
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=44.52 E-value=89 Score=29.39 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=46.7
Q ss_pred hCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHh
Q 039154 40 LGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGS 115 (211)
Q Consensus 40 lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~ 115 (211)
+|.+.-.+-.+..|.. ++-.++-+|+++--+++-+.. +.-.-.++..|.++..|.+..|-..|+-+++-++.
T Consensus 632 Mgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsv----SNPq~~vlDtLsk~shd~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 632 MGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSV----SNPQVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred hhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcc----CCCcchHHHHHHHhccCcchHHHHHHHHHhccccC
Confidence 5555555555666666 677777777777777766543 22233566777777777777777777777765544
No 320
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=44.37 E-value=1.9e+02 Score=24.30 Aligned_cols=134 Identities=12% Similarity=0.076 Sum_probs=74.4
Q ss_pred HHHHHHHHHhccccccC-ccccccccc-hHHhhhccch---hhHHHHHHH-HHHHHHHhhcCh------hHHHHhhHHHH
Q 039154 63 VLLAMAEELGVFIPYVG-GVEHAHVLL-PPLETLCTVE---ETCMRDKAV-ESLCRIGSQMRE------SDLVDWFIPLV 130 (211)
Q Consensus 63 VR~~~a~~L~~l~~~ig-~~~~~~~ll-p~l~~l~~d~---~~~VR~~a~-~~l~~l~~~l~~------~~~~~~l~p~i 130 (211)
||+.+.+-+..+..... .+...+.++ |++...+.|= .+..|+.-+ ..+..++.+++. ..+.+.++...
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55555555555544332 122223333 3344344432 345565433 344445555444 12333333333
Q ss_pred HHhh-cCC--CchHHHhHHhHHHhhccC-------CChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 131 KRLA-AGE--WFTARVSACGLFHIAYPS-------APDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 131 ~~l~-~d~--~~~vR~~~a~~l~~l~~~-------~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
..+. +|- ....|...-+.+..+... ++++..+.++....--++++..+|-..+...+.++...+..
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3333 332 246776665555554432 45555677888889999999999999999999999998866
No 321
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=44.31 E-value=1e+02 Score=22.21 Aligned_cols=71 Identities=11% Similarity=0.004 Sum_probs=42.2
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHH--hhHHHHHHhh---c--------CCCchHHHhHHhHHH
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD--WFIPLVKRLA---A--------GEWFTARVSACGLFH 150 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~--~l~p~i~~l~---~--------d~~~~vR~~~a~~l~ 150 (211)
...+...|.+-+++.+..|+.++.+.|..++..-+.+.... .-...|+.+. . +....||..+-+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 34566666666677778888888888888888866442211 0122333332 2 123467877777776
Q ss_pred hhcc
Q 039154 151 IAYP 154 (211)
Q Consensus 151 ~l~~ 154 (211)
.++.
T Consensus 116 ~if~ 119 (122)
T cd03572 116 AIFS 119 (122)
T ss_pred HHhc
Confidence 6643
No 322
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=44.24 E-value=1.3e+02 Score=22.14 Aligned_cols=67 Identities=7% Similarity=0.001 Sum_probs=45.9
Q ss_pred HHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCC------CCHHHHHHHHHhhHHHHhhhCc
Q 039154 130 VKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQD------DMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D------~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
+.+-.++.+..|=..+..++..+...+|.. ....|+.-+.+++.+ ..+.||.-+..-+...+..|+.
T Consensus 43 i~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 43 LAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 333345566666666667777777777765 245666777777753 5688888888888888888864
No 323
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=43.55 E-value=95 Score=21.71 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=33.4
Q ss_pred HHHHHHHHHhccccccCccccccccc---hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh
Q 039154 63 VLLAMAEELGVFIPYVGGVEHAHVLL---PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW 125 (211)
Q Consensus 63 VR~~~a~~L~~l~~~ig~~~~~~~ll---p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~ 125 (211)
-|+.+...++.+.+..| ........ -.|..-++ .++.|..|.++-..+...++.+++...
T Consensus 31 ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~l 93 (107)
T smart00802 31 EKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPL 93 (107)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46666667777776433 22222221 12333332 345777888887777777777665443
No 324
>PF08010 Phage_30_3: Bacteriophage protein GP30.3; InterPro: IPR012596 Proteins in this family are bacteriophage Y12G proteins. Gene Y12G encodes a 17.1kDa protein in Gp30-rIII intergenic region, which in T4 is a 75 amino acid basic peptide which has a C terminus rich in charged amino acids [][].
Probab=42.45 E-value=1e+02 Score=22.92 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=52.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchh-------------------hhhhhcCCChHHHHHHHHH
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELI-------------------PFLSANNDDDDEVLLAMAE 69 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~-------------------p~l~~~~D~~~~VR~~~a~ 69 (211)
++.++..||=+|++.+...+...+.-|+..|.. ..+..-+ ..+.++. +++..|+++..
T Consensus 32 ~EGFLQ~lKf~~~~~q~~i~~m~G~~AK~~G~~~~~~~~qtlYw~G~p~~R~S~~y~~Li~~Ay~~~~-QN~~F~~aL~a 110 (146)
T PF08010_consen 32 IEGFLQGLKFKNPEMQRRIFKMSGKEAKFRGKKKNWARDQTLYWKGEPIHRHSEAYQNLIDRAYRAMF-QNEGFRRALLA 110 (146)
T ss_pred HHHHHHhccCCCHHHHHHHHHHhhHHHHHcccccchhhhcceeECCCccccCCHHHHHHHHHHHHHHH-hCHHHHHHHHH
Confidence 899999999999998888899999999999932 2222221 1222333 67777777766
Q ss_pred HHhc-cccccCccccccccchH
Q 039154 70 ELGV-FIPYVGGVEHAHVLLPP 90 (211)
Q Consensus 70 ~L~~-l~~~ig~~~~~~~llp~ 90 (211)
.=+. +.-.+|..+-...+||.
T Consensus 111 T~~~~L~HsiG~~~p~~TiLT~ 132 (146)
T PF08010_consen 111 TKNSVLTHSIGKHDPFDTILTE 132 (146)
T ss_pred cCCCeEEeecCCCCcCcccccH
Confidence 6653 33346655555566653
No 325
>PF05536 Neurochondrin: Neurochondrin
Probab=42.44 E-value=2.2e+02 Score=26.08 Aligned_cols=186 Identities=15% Similarity=0.066 Sum_probs=93.6
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-hhhchh-----hhhhh-cC------CChHH-HHHHHHHHHhc
Q 039154 8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-TPKELI-----PFLSA-NN------DDDDE-VLLAMAEELGV 73 (211)
Q Consensus 8 ~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-~~~~L~-----p~l~~-~~------D~~~~-VR~~~a~~L~~ 73 (211)
-.+++..+..|++.+.++|..++-.+.++.+.-.... ++..+. +|+.. +. +.++. .+.-+..-|..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4568889999999998888877766655543211100 111111 22222 11 11233 33334444455
Q ss_pred cccc--cCccccccccchHHhhhccchhh-HHHHHHHHHHHHHHhhc-ChhH-HHHhhHHHHHHhhcCCCchHHHhHHhH
Q 039154 74 FIPY--VGGVEHAHVLLPPLETLCTVEET-CMRDKAVESLCRIGSQM-RESD-LVDWFIPLVKRLAAGEWFTARVSACGL 148 (211)
Q Consensus 74 l~~~--ig~~~~~~~llp~l~~l~~d~~~-~VR~~a~~~l~~l~~~l-~~~~-~~~~l~p~i~~l~~d~~~~vR~~~a~~ 148 (211)
|+.. +......-.-+|.|.+.+..... .+-..|+..|..++..- |.+. +..--+|.+.....+ .....-.+..+
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 5541 11111122345777666665555 88888888888888332 2222 223345555555444 32345556666
Q ss_pred HHhhccCCChH-------HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 149 FHIAYPSAPDI-------LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 149 l~~l~~~~~~~-------~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
+..+....+.+ ....+++.+-+......-.-|-.++.-|+.+....
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 65555555532 12233344444444444444555666666665555
No 326
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=42.41 E-value=15 Score=32.12 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=39.6
Q ss_pred chhhhhhh-cCC-ChHHHHHHHHHHHhccccccCc-cccc-c-ccchHHhhhccchhhHHHHHHHHHHHHHH
Q 039154 48 ELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGG-VEHA-H-VLLPPLETLCTVEETCMRDKAVESLCRIG 114 (211)
Q Consensus 48 ~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~-~~~~-~-~llp~l~~l~~d~~~~VR~~a~~~l~~l~ 114 (211)
+|+..+.+ ++- .+|.+...||.-+|.++++... .... + ---..+.++++.+++.||..|+.++.++.
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 34444444 332 2466666677777777665321 0000 0 01134678899999999999999887763
No 327
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=42.34 E-value=1.1e+02 Score=23.22 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCC
Q 039154 99 ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEW 138 (211)
Q Consensus 99 ~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~ 138 (211)
+..||..|++.|.. ++.+++..++..++..+--+..
T Consensus 91 ~~~VR~yAV~~L~~----~sd~eL~~yL~QLVQaLKyE~~ 126 (166)
T cd00870 91 NPVVRKYAVSRLKL----ASDEELLLYLLQLVQALKYENL 126 (166)
T ss_pred CHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHhccc
Confidence 47899999999885 6788888888888877766543
No 328
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=42.12 E-value=3.3e+02 Score=27.48 Aligned_cols=129 Identities=14% Similarity=0.145 Sum_probs=73.5
Q ss_pred hhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhcc------------chhhHHHHHHHHHHHH
Q 039154 46 PKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT------------VEETCMRDKAVESLCR 112 (211)
Q Consensus 46 ~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~------------d~~~~VR~~a~~~l~~ 112 (211)
-.+|+.++.. +.-+...+|.++.-.||..-..+- +...+.+-+.+..... -..+.+|...+..+..
T Consensus 194 aR~LFk~ivPlLks~~~~~r~AaVlaLG~~n~~v~-~~LleeL~~~i~~~~~e~e~r~~~k~rr~Rrd~LR~ev~hVl~l 272 (1120)
T PF14228_consen 194 ARELFKLIVPLLKSESSSFRDAAVLALGSINLNVY-RTLLEELQSYIEECNSEAESRPKWKRRRRRRDRLRTEVTHVLRL 272 (1120)
T ss_pred HHHHHHHHhhhhccCcHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHHH
Confidence 3455555555 556777788888888877443221 1111122222222110 1235688888888888
Q ss_pred HHhhcChh------HHHHhhHHHHHHh---hc----CCCc---hHHHhHHhHHHhhccCCC--------hHHHHHHHHHH
Q 039154 113 IGSQMRES------DLVDWFIPLVKRL---AA----GEWF---TARVSACGLFHIAYPSAP--------DILKTELRSIY 168 (211)
Q Consensus 113 l~~~l~~~------~~~~~l~p~i~~l---~~----d~~~---~vR~~~a~~l~~l~~~~~--------~~~~~~l~~~~ 168 (211)
+++.+.+. .+.+.++.+++.. .. +.+| +.|++.|..+..++..+. .+.+..++.+|
T Consensus 273 lAe~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~~se~fpfe~RkslF~l~ 352 (1120)
T PF14228_consen 273 LAEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKAKSEWFPFEARKSLFNLF 352 (1120)
T ss_pred HHhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhchhhcCCHHHHHHHHHHH
Confidence 88887653 3344555555543 22 2235 688888887776655432 22567778888
Q ss_pred HHhcCCC
Q 039154 169 TQLCQDD 175 (211)
Q Consensus 169 ~~L~~D~ 175 (211)
...|...
T Consensus 353 ~eWCGy~ 359 (1120)
T PF14228_consen 353 EEWCGYS 359 (1120)
T ss_pred HHHhhhh
Confidence 8888543
No 329
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=42.09 E-value=1.2e+02 Score=23.26 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCC
Q 039154 99 ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGE 137 (211)
Q Consensus 99 ~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~ 137 (211)
+..||..|++.|.. ++++++..++..++..+--+.
T Consensus 84 d~~VR~yAV~~L~~----~sd~eL~~yL~QLVQaLKyE~ 118 (171)
T cd00872 84 DEHVREFAVRCLEK----LSDDELLQYLLQLVQVLKYEP 118 (171)
T ss_pred CHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHccc
Confidence 47899999988765 678888888888888876654
No 330
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=41.58 E-value=65 Score=18.74 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh
Q 039154 161 KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH 198 (211)
Q Consensus 161 ~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~ 198 (211)
.++|...+++++..+++..|......+..+.+ |++++
T Consensus 5 ~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~-fs~~e 41 (46)
T PF01465_consen 5 LEYLKNVLLQFLESREPSEREQLLPVIATLLK-FSPEE 41 (46)
T ss_dssp HHHHHHHHHHHHTTSS---HHHHHHHHHHHTT---HHH
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHC-CCHHH
Confidence 56788888888888888889888876666655 34443
No 331
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=41.05 E-value=2.8e+02 Score=25.21 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCCHH--HHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccCccccccc
Q 039154 11 IAVLTDELKNDDIQ--LRLNSIRRLSTIARALGEERTPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (211)
Q Consensus 11 l~~l~~~l~s~~~~--~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ 86 (211)
++.++.-+.++|-+ +|..|.+.|..+-..-..++....=+.-+.. . ..+.++..+..+.-++.+-++- ++..+.
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS--eet~~~ 259 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHS--EETCQR 259 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhh--HHHHHH
Confidence 67788888888854 4999999888775443333322111222222 2 2345566666666666665531 111111
Q ss_pred -----cchHHhhhccchhhHHHHHHHHHHHHHHh
Q 039154 87 -----LLPPLETLCTVEETCMRDKAVESLCRIGS 115 (211)
Q Consensus 87 -----llp~l~~l~~d~~~~VR~~a~~~l~~l~~ 115 (211)
.+..+...+.-.++.+-..|+-+|++++-
T Consensus 260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L 293 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCAL 293 (832)
T ss_pred HHhhcccchheeecccCCHHHHHHHHHHhhhhhh
Confidence 12223334454555555555556666543
No 332
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=40.96 E-value=1.4e+02 Score=21.54 Aligned_cols=31 Identities=13% Similarity=0.182 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
.++...+.+=++|.++.|+.-+..-|..++.
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~ 67 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCE 67 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHh
Confidence 3445555555555555555555555544444
No 333
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=40.64 E-value=2.2e+02 Score=23.95 Aligned_cols=163 Identities=12% Similarity=0.040 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHhCCcchhhchh---hhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhh---hcc
Q 039154 24 QLRLNSIRRLSTIARALGEERTPKELI---PFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLET---LCT 96 (211)
Q Consensus 24 ~~R~~a~~~l~~ia~~lg~~~~~~~L~---p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~---l~~ 96 (211)
.|=+.|..-...|=..+|++...+++- |-+.. .....-.||-...+-+....-.+|. .....+-+++.. -++
T Consensus 70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLe 148 (307)
T PF04118_consen 70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLE 148 (307)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccc
Confidence 344456666667777888876555542 22222 3344556777777766655544665 333333333333 346
Q ss_pred chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC-------hH--------HH
Q 039154 97 VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-------DI--------LK 161 (211)
Q Consensus 97 d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~-------~~--------~~ 161 (211)
|+..++-+.+.+-+..+...++.+.+-..+.-.+. .+..+|..+..-+..-.+... .+ ..
T Consensus 149 de~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (307)
T PF04118_consen 149 DEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDP 223 (307)
T ss_pred cCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCc
Confidence 67788999999999999999999866665544333 334577776655544444333 00 13
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
.-++..|...++|++..|+|.+..-|-.-..
T Consensus 224 ~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 224 GLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred cHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 4578899999999999999988776654433
No 334
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.29 E-value=3.7e+02 Score=26.34 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcc-hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhh-----
Q 039154 22 DIQLRLNSIRRLSTIARALGEER-TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL----- 94 (211)
Q Consensus 22 ~~~~R~~a~~~l~~ia~~lg~~~-~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l----- 94 (211)
|++---.+...++..+.-+|..- --+.-+|.+.+ +...... ..+...+..+++. +...+.|....+
T Consensus 522 n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s--~q~i~tl~tlC~~-----C~~~L~py~d~~~a~~~ 594 (982)
T KOG2022|consen 522 NPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKES--EQAISTLKTLCET-----CPESLDPYADQFSAVCY 594 (982)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHH--HHHHHHHHHHHHh-----hhhhCchHHHHHHHHHH
Confidence 45554456677777777777542 22344566666 4422222 2333346666653 334444444332
Q ss_pred --cc--chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHH
Q 039154 95 --CT--VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLV 130 (211)
Q Consensus 95 --~~--d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i 130 (211)
+. .-.+++|.+.+++++.+.+.+.+|++-++++.++
T Consensus 595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~li 634 (982)
T KOG2022|consen 595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLI 634 (982)
T ss_pred HHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHH
Confidence 22 2247889999999999999999988877766544
No 335
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=39.82 E-value=1.9e+02 Score=25.59 Aligned_cols=50 Identities=16% Similarity=0.066 Sum_probs=37.1
Q ss_pred HHHhHHhHHHhhccCC--ChHH--HHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 141 ARVSACGLFHIAYPSA--PDIL--KTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 141 vR~~~a~~l~~l~~~~--~~~~--~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
+-..||.=++.++... |... +-.......+|+++++++||..|..+++++
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3456677777777765 3332 223567789999999999999999999877
No 336
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=39.61 E-value=1.3e+02 Score=27.57 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhc-ChhHHHHhhHHHHHHhhcCCCch
Q 039154 62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQM-RESDLVDWFIPLVKRLAAGEWFT 140 (211)
Q Consensus 62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l-~~~~~~~~l~p~i~~l~~d~~~~ 140 (211)
++-+++.++++.... .....+.++.+|-...-..+..||.+|..+|..++... ....+-..+..++.+ ..|..+.
T Consensus 450 ~Lf~t~i~aiPrcL~---~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p~~~~vi~~Fa~Fif~-~~d~~~~ 525 (552)
T PF14222_consen 450 DLFRTCIQAIPRCLP---SSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKPNRQQVITGFARFIFR-FDDKYPS 525 (552)
T ss_pred HHHHHHHHHccccCC---CCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHee-CcccCcc
Confidence 577788888887654 33345678888888888899999999999999999999 566666666666665 3333322
Q ss_pred HHHhHHhHHHhhccCCChHHHHHHHHHHHHhc
Q 039154 141 ARVSACGLFHIAYPSAPDILKTELRSIYTQLC 172 (211)
Q Consensus 141 vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~ 172 (211)
. +.. ..++....+.++..|+.|+
T Consensus 526 ~-----~~~----~~l~~~~~~~~L~lyveLL 548 (552)
T PF14222_consen 526 M-----YDG----GYLGSGEIESLLKLYVELL 548 (552)
T ss_pred c-----hhh----hccchHHHHHHHHHHHHHH
Confidence 1 111 1123333456666666665
No 337
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=39.37 E-value=3.1e+02 Score=25.21 Aligned_cols=65 Identities=9% Similarity=0.048 Sum_probs=35.4
Q ss_pred HhhHHHHHHhhcCC-CchHHHhHHhHHHhhccCCChH--HHHH----HHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 124 DWFIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI--LKTE----LRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 124 ~~l~p~i~~l~~d~-~~~vR~~~a~~l~~l~~~~~~~--~~~~----l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
+.+.|...+++..+ .|.+ +.-+....-.+++. +.+. ++.....-++|. ..|..+..++..++=++
T Consensus 180 ~~i~~~~~~~~~K~khw~~----afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvY 251 (552)
T PF14222_consen 180 ETIYPRAAKMMSKPKHWNV----AFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVY 251 (552)
T ss_pred HHHHHHHHHHHhCcchhhh----HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHH
Confidence 45666666665553 3432 22222222233333 3343 444445557777 77888888888776553
No 338
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=38.68 E-value=2.6e+02 Score=24.09 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=48.1
Q ss_pred HHHhhHHHHHHhhcC-CCch-H-H--HhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 122 LVDWFIPLVKRLAAG-EWFT-A-R--VSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 122 ~~~~l~p~i~~l~~d-~~~~-v-R--~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
+.+.+.+.+.+|..+ +.+. + + ......++.-. .-+-++.+.++.......+++++.||..|..+=..++....+
T Consensus 229 ~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 229 LIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP 307 (372)
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345566667777777 3311 0 0 11222221111 122226788888889999999999999999999999988776
Q ss_pred h
Q 039154 197 A 197 (211)
Q Consensus 197 ~ 197 (211)
+
T Consensus 308 ~ 308 (372)
T PF12231_consen 308 N 308 (372)
T ss_pred C
Confidence 4
No 339
>PF01816 LRV: Leucine rich repeat variant; InterPro: IPR004830 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This signature describes a leucine-rich repeat variant (LRV), which has a novel repetitive structural motif consisting of alternating alpha- and 3(10)-helices arranged in a right-handed superhelix, with the absence of the beta-sheets present in other LRRs [].; PDB: 1LRV_A.
Probab=38.51 E-value=27 Score=17.84 Aligned_cols=10 Identities=30% Similarity=0.142 Sum_probs=8.1
Q ss_pred HHHHHHHHHh
Q 039154 177 PMVRRSAASN 186 (211)
Q Consensus 177 ~~VR~aaa~~ 186 (211)
|.||.++|.+
T Consensus 1 ~~VR~avA~~ 10 (26)
T PF01816_consen 1 WEVRAAVARR 10 (26)
T ss_dssp HHHHHHHHHH
T ss_pred CHHHHHHHHc
Confidence 6788888877
No 340
>COG2733 Predicted membrane protein [Function unknown]
Probab=38.47 E-value=2.7e+02 Score=24.37 Aligned_cols=187 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
|...+++.|-.++-.+++ .=+.+..+.+.+..+..++.+-..+.. ..++.| .-+.......+|+.+......
T Consensus 167 ~~~~vL~~l~~d~r~q~l-~D~~~~~L~r~~~~~~v~~~i~~~i~r~~~ee~p------~f~~~~~~~~v~~~~I~~a~~ 239 (415)
T COG2733 167 TAGRVLESLTADDRHQAL-LDKLIDRLIRWLLNDKVREFIAAVIVRYLEEEHP------LFAPIIIVSLVGKRDISDAVN 239 (415)
T ss_pred hHHHHHHHHHhcccHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCc------cchhhhhHHHHhhchHHHHHH
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcCh-------------------------hHHHHhhHHHHHHhhcCCCchHHH
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRE-------------------------SDLVDWFIPLVKRLAAGEWFTARV 143 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~-------------------------~~~~~~l~p~i~~l~~d~~~~vR~ 143 (211)
..+.....|++...|...-..+..+...+.. .+.-+.+=..+..=.++++..+|.
T Consensus 240 ~~~D~v~~~p~h~~rk~~~R~~~~~i~~L~~Dp~~~~r~e~iK~~~~~~~~i~~~~~~~w~~~~~~l~~D~e~~~s~l~~ 319 (415)
T COG2733 240 SFLDEVRRDPDHKMRKDFDRFLFDLIDDLYHDPGMAARAEAIKSYLKEDEAIATAAGDMWTSLSEWLKEDYESEDSMLRK 319 (415)
T ss_pred HHHHHHHhCcCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCchhHHHH
Q ss_pred hHHhHHHhhccCCChH--HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHH
Q 039154 144 SACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDI 203 (211)
Q Consensus 144 ~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~l 203 (211)
..+..+..+++.+..+ .+.++=..+..-..+=..+-+...-..+.+-.+..+.+.....+
T Consensus 320 ~l~~~~~~~Ge~l~~D~~lr~kln~~~~~aa~~l~e~~~~~it~~I~dTv~~wD~~elsr~i 381 (415)
T COG2733 320 RLARAVQSVGEELIADDALRAKLNEHLVQAAERLAEEKHAEITKHISDTVKRWDAEELSRQI 381 (415)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCHHHHHHHH
No 341
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=38.12 E-value=2.7e+02 Score=24.12 Aligned_cols=179 Identities=12% Similarity=0.066 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHHHHHHh-CCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc-cccccchHHhhhccc
Q 039154 21 DDIQLRLNSIRRLSTIARAL-GEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE-HAHVLLPPLETLCTV 97 (211)
Q Consensus 21 ~~~~~R~~a~~~l~~ia~~l-g~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~-~~~~llp~l~~l~~d 97 (211)
.+...|..|.+-+..+...- |+.....-++..+.. ..+.++..|..+.+.|-+++=. .++- ....-+..+...+.|
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~-~P~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALL-NPELVAECGGIRVLLRALID 158 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh-CHHHHHHcCCHHHHHHHHHh
Confidence 34667999998888776442 444444555555666 7778888999998888666531 1110 111223444444455
Q ss_pred hhhHHHHHHHHHHHHHHhhcChh-------HHHHhhHHHHHHh---hcCCC-chHHHhHHhHHHhhccCCCh------HH
Q 039154 98 EETCMRDKAVESLCRIGSQMRES-------DLVDWFIPLVKRL---AAGEW-FTARVSACGLFHIAYPSAPD------IL 160 (211)
Q Consensus 98 ~~~~VR~~a~~~l~~l~~~l~~~-------~~~~~l~p~i~~l---~~d~~-~~vR~~~a~~l~~l~~~~~~------~~ 160 (211)
....+-+..+.++..+...-... +....+-|+.-.- .++.. ...-..++..+..+-...+. +.
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 55556667777776666554332 2222233333221 12222 11222344444444333221 11
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHH
Q 039154 161 KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKT 201 (211)
Q Consensus 161 ~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~ 201 (211)
. .-+.-++..+.-+.+.||+....-+-++...=.|+|..+
T Consensus 239 ~-~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~ 278 (371)
T PF14664_consen 239 F-RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTES 278 (371)
T ss_pred c-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccc
Confidence 1 234445666777899999999999999888766766544
No 342
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=37.74 E-value=2.1e+02 Score=28.54 Aligned_cols=105 Identities=13% Similarity=0.136 Sum_probs=58.4
Q ss_pred hccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCC--chHHHhHHhHHHhhccCCChH--HHHHHHHHHH
Q 039154 94 LCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEW--FTARVSACGLFHIAYPSAPDI--LKTELRSIYT 169 (211)
Q Consensus 94 l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~--~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~ 169 (211)
|-.|.+..-+..|+.++.++-..-+. ..+.+-..|.. |++|.+||..|...+... .+ -...|+.+|.
T Consensus 651 Lr~drDVvAQ~EAI~~le~~p~~~s~--------~~L~rtl~der~FyrIR~~Aa~aLak~a~~~-~dwtG~~~Li~~F~ 721 (1180)
T KOG1932|consen 651 LRQDRDVVAQMEAIESLEALPSTASR--------SALTRTLEDERYFYRIRIAAAFALAKTANGE-SDWTGPPHLIQFFR 721 (1180)
T ss_pred HHhcccHHHHHHHHHHHHcCCcchhH--------HHHHHHHhhcchhhHHHHHHHHHHHHhhccc-ccccChHHHHHHHH
Confidence 33555566677777777665444333 22334444443 788999998888876654 22 1345666666
Q ss_pred HhcCCCC--------------HHHHHHHHHhhHHHHhhhC--chhhHHHHHHHH
Q 039154 170 QLCQDDM--------------PMVRRSAASNLRKFAATVE--PAHLKTDIMSIF 207 (211)
Q Consensus 170 ~L~~D~~--------------~~VR~aaa~~l~~~~~~~~--~~~~~~~llp~~ 207 (211)
+.--+.+ .-|+++.-.++..+-..-| |..+++.|+.++
T Consensus 722 ~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~a~a~lR~~~g~cp~~V~~FlLdLl 775 (1180)
T KOG1932|consen 722 KKFCSKDSTIPKSNNFSNFQEYFVQCAIPVAFASLRGREGKCPKEVKAFLLDLL 775 (1180)
T ss_pred HHhccccCCCCCcCccccHHHHHHHHhhHHHHHHhccccCCChHHHHHHHHHHh
Confidence 5532221 2456665555544444433 456666666554
No 343
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=36.71 E-value=3.5e+02 Score=25.06 Aligned_cols=101 Identities=10% Similarity=0.077 Sum_probs=64.6
Q ss_pred cCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhH----HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhc
Q 039154 78 VGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESD----LVDWFIPLVKRLAAGEWFTARVSACGLFHIAY 153 (211)
Q Consensus 78 ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~----~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~ 153 (211)
+|.......++..+.++....++..|......+..+.-....++ +.+.=+..+..+++|+.|.|-..+...+-.+.
T Consensus 465 L~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 465 LGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred hHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 44445566777888887776667777777777776654444432 23344567888999999999999888888775
Q ss_pred cCCCh-----H------HHHHHHHHHHHhcCCCCHH
Q 039154 154 PSAPD-----I------LKTELRSIYTQLCQDDMPM 178 (211)
Q Consensus 154 ~~~~~-----~------~~~~l~~~~~~L~~D~~~~ 178 (211)
..-.+ + -+..|...+..-..-..|.
T Consensus 545 c~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~ 580 (743)
T COG5369 545 CDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPM 580 (743)
T ss_pred cccccccccceeEEecChHHHHHHHHHHHHHhcCch
Confidence 42111 1 1344666666655555443
No 344
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=36.45 E-value=3.8e+02 Score=25.97 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHH
Q 039154 174 DDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFE 208 (211)
Q Consensus 174 D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~ 208 (211)
-..+.++++.++-|+-++ +|.++.++.|+-+|.
T Consensus 240 r~~~~i~~~l~RiLP~Lt--~G~~e~m~~Lv~~F~ 272 (802)
T PF13764_consen 240 RSNPQILQALARILPFLT--YGNEEKMDALVEHFK 272 (802)
T ss_pred cCCHHHHHHHHHHhhHHh--cCCHHHHHHHHHHHH
Confidence 345677777766666554 455555666666554
No 345
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=36.22 E-value=1.7e+02 Score=21.69 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCC
Q 039154 99 ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGE 137 (211)
Q Consensus 99 ~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~ 137 (211)
+..||..|++.|.. ++.+++.-++..++..+.-|.
T Consensus 84 ~~~vr~yAv~~L~~----~~~~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 84 DPVVRQYAVRVLES----ASDDELLLYLPQLVQALKYEP 118 (152)
T ss_pred CHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHhccc
Confidence 38999999988854 777787777777777775554
No 346
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.92 E-value=3.6e+02 Score=25.05 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=60.4
Q ss_pred HHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhh
Q 039154 38 RALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQ 116 (211)
Q Consensus 38 ~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~ 116 (211)
-++|.+.-.+-.+..+.. ..-.++-+|+.+--+++-+.. .+-.-.++..|.....|.+..|-..++-+++-++.-
T Consensus 631 iamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~----SnPQm~vfDtL~r~shd~dl~v~~ntIfamGLiGAG 706 (881)
T COG5110 631 IAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSP----SNPQMNVFDTLERSSHDGDLNVIINTIFAMGLIGAG 706 (881)
T ss_pred hhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccC----CCcchHHHHHHHHhccccchhHHHHHHHHhhccccC
Confidence 358888777777888888 888999999999888887554 444457888999999999999999998888766543
No 347
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.67 E-value=3.7e+02 Score=25.03 Aligned_cols=95 Identities=19% Similarity=0.273 Sum_probs=56.4
Q ss_pred CCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c-CCChH-HHHHHHHHHHhc-cccccCc
Q 039154 5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-N-NDDDD-EVLLAMAEELGV-FIPYVGG 80 (211)
Q Consensus 5 ~~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~-~D~~~-~VR~~~a~~L~~-l~~~ig~ 80 (211)
+|-...+..+-+++++.+...|.+|+-.++.. .-|. ..++++.++.. . .++.| +|-..++-.||. |+....
T Consensus 446 ~E~~palalLs~yl~s~s~k~~~aaiLGlg~a--fsGt--~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcn- 520 (881)
T COG5110 446 EERPPALALLSNYLQSSSSKHVIAAILGLGAA--FSGT--QAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCN- 520 (881)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHhhhHHh--hcCC--cHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccC-
Confidence 33344488888999999999999888887643 3343 34555655555 2 33443 577777777774 333333
Q ss_pred cccccccchHHhhhccch--hhHHHH
Q 039154 81 VEHAHVLLPPLETLCTVE--ETCMRD 104 (211)
Q Consensus 81 ~~~~~~llp~l~~l~~d~--~~~VR~ 104 (211)
.+..+.++..|.+--+-+ ...+|-
T Consensus 521 gD~ts~ilqtf~Er~~~e~~tqw~RF 546 (881)
T COG5110 521 GDLTSLILQTFVERGKIESETQWFRF 546 (881)
T ss_pred chHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 344556666655544422 234554
No 348
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=35.65 E-value=1.6e+02 Score=20.82 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccch-hhH
Q 039154 24 QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETC 101 (211)
Q Consensus 24 ~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~-~~~ 101 (211)
-+|...+..+..|+..--|+... ..++.+.+ ++. ++.-......-|..+.+-++. ..+.. ...
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp-~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~~ 67 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWP-DFLEDLLQLLQS-SPQHLELVLRILRILPEEITD-------------FRRSSLSQE 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTST-THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT-------------SHCCHSHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCc-hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh-------------hhchhhhHH
Confidence 45666777788888877777764 35555555 333 344444444444443332211 00011 111
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhcCCCCHHH
Q 039154 102 MRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMV 179 (211)
Q Consensus 102 VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~D~~~~V 179 (211)
.|....+.+..- ...+.+.+...+..-...........+.+++.....-.+.. ....+++.+.++++++.-
T Consensus 68 r~~~l~~~l~~~-----~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~-- 140 (148)
T PF08389_consen 68 RRRELKDALRSN-----SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL-- 140 (148)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--
Confidence 222222222221 11112222222222222222566777777887777766665 234588888888866554
Q ss_pred HHHHHHhh
Q 039154 180 RRSAASNL 187 (211)
Q Consensus 180 R~aaa~~l 187 (211)
|.+|+..|
T Consensus 141 ~~~A~~cl 148 (148)
T PF08389_consen 141 REAAAECL 148 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 77776643
No 349
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.36 E-value=75 Score=22.39 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=23.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIA 37 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia 37 (211)
-+..++.+|.|.++.++..|++.|.+.+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c 36 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEAC 36 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3778888898888888888888887765
No 350
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=34.74 E-value=32 Score=24.11 Aligned_cols=24 Identities=21% Similarity=0.029 Sum_probs=16.7
Q ss_pred HHhhhccchhhHHHHHHHHHHHHH
Q 039154 90 PLETLCTVEETCMRDKAVESLCRI 113 (211)
Q Consensus 90 ~l~~l~~d~~~~VR~~a~~~l~~l 113 (211)
.|..|+++++..||..|+..+..+
T Consensus 51 aLl~LL~hpn~~VRl~AA~~~L~~ 74 (106)
T PF09450_consen 51 ALLPLLKHPNMQVRLWAAAHTLRY 74 (106)
T ss_dssp GGGGGGGSS-HHHHHHHHHTTTTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHh
Confidence 345677999999998887765553
No 351
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=34.16 E-value=2.4e+02 Score=22.35 Aligned_cols=175 Identities=16% Similarity=0.144 Sum_probs=97.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-----cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-----NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-----~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
.+...|.|.|+.+|..|++.+...-..-+...+..++.-+... -..|-|.|...+|+.+..+...+...+..-..
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~f 83 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALLF 83 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHHH
Confidence 4677899999999999999887665444433255666655443 35788999999999999998877665322111
Q ss_pred chH-Hhhhc----cchh-------hHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhh--cC--CCchHHHhHHhHHHh
Q 039154 88 LPP-LETLC----TVEE-------TCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLA--AG--EWFTARVSACGLFHI 151 (211)
Q Consensus 88 lp~-l~~l~----~d~~-------~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~--~d--~~~~vR~~~a~~l~~ 151 (211)
+.. +..+. .-+. --||.....++.-+.+.--....-+.+...+.+-. .+ ..-.+++..+.++..
T Consensus 84 ~~~f~~tm~rEW~~ID~~R~DKf~~LvR~~~~~~~~~l~~~~w~~~~v~~~~~~l~~~~l~~~~~~p~Gl~~H~~Di~ld 163 (217)
T PF05997_consen 84 LKAFWETMRREWDGIDRLRMDKFLMLVRRFLRQSFRFLKKNGWDKELVEEFNEILSETPLNPNDQVPNGLRYHFADIFLD 163 (217)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHccCCCcCCCchhHHHHHHHHHHH
Confidence 111 22211 1111 12355555555554444222222223333332221 11 235678888866532
Q ss_pred -h---ccC---------CChHHHHHHHHHHHHh-cCCCCHHHHHHHHHhh
Q 039154 152 -A---YPS---------APDILKTELRSIYTQL-CQDDMPMVRRSAASNL 187 (211)
Q Consensus 152 -l---~~~---------~~~~~~~~l~~~~~~L-~~D~~~~VR~aaa~~l 187 (211)
+ ... ++.+....++.+|.++ ...++..||+.+..++
T Consensus 164 EL~k~~~~~~~~~e~~~~~~~~~~~ll~PF~~~~~~s~~k~l~~~i~~~V 213 (217)
T PF05997_consen 164 ELEKVGGSESEDEEEENLPAEPLLLLLEPFVKLLAKSPDKVLRKRIKESV 213 (217)
T ss_pred HHHHHhcccccchhcccCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 2 221 2223334555555555 5566688888776553
No 352
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=34.16 E-value=1.6e+02 Score=20.25 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 163 ELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 163 ~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
.++.....-+..-.+.||..+..-|.-+.+.+|.+
T Consensus 11 ~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 11 LLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 34444444455555666666666666666655554
No 353
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=34.01 E-value=2.2e+02 Score=21.91 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=46.3
Q ss_pred chhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhh
Q 039154 48 ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWF 126 (211)
Q Consensus 48 ~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l 126 (211)
..+|.+.. ..-.+++-...+-+.+....+ +++.+.. .+|..-.. +..||..|++.|. .++.+++..++
T Consensus 45 ~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~-~~p~~AL----~LL~~~f~--~~~VR~yAv~~L~----~~~d~~l~~yL 113 (184)
T PF00613_consen 45 EALPKLLRSVDWWNPEEVSEAYQLLLQWPP-ISPEDAL----ELLSPNFP--DPFVRQYAVRRLE----SLSDEELLFYL 113 (184)
T ss_dssp GGHHHHHTTSTTTSHHHHHHHHHHHHTSHC-TTHHHHH----HCTSTT-----HHHHHHHHHHHC----TS-HHHHHHHH
T ss_pred hHHHHHHhhCCCCchhhHHHHHHHHHcCCC-CCHHHHH----HHHHhhcc--HHHHHHHHHHHHH----HcCchHHHHHH
Confidence 34555555 444555544555556655444 3333322 22222122 3889999999884 47888888888
Q ss_pred HHHHHHhhcCCC
Q 039154 127 IPLVKRLAAGEW 138 (211)
Q Consensus 127 ~p~i~~l~~d~~ 138 (211)
..++..+--|+.
T Consensus 114 pQLVQaLr~e~~ 125 (184)
T PF00613_consen 114 PQLVQALRYEPY 125 (184)
T ss_dssp HHHHHHGGGSSS
T ss_pred HHHHHHheeccc
Confidence 888888876643
No 354
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=33.65 E-value=61 Score=24.65 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=24.0
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCCc
Q 039154 12 AVLTDELKNDD-IQLRLNSIRRLSTIARALGEE 43 (211)
Q Consensus 12 ~~l~~~l~s~~-~~~R~~a~~~l~~ia~~lg~~ 43 (211)
+.+.+.|.||+ |.+|++++..++.|++..|.+
T Consensus 67 n~v~~~L~~D~rpsVkLAtISLiS~I~~k~~~~ 99 (167)
T PF11099_consen 67 NEVIEILLSDNRPSVKLATISLISIIIEKWGNK 99 (167)
T ss_dssp HHHHHHCCHT--HHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHhccCCCceeehHHHHHHHHHHHHhhc
Confidence 34566677677 999999999999999999864
No 355
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=33.65 E-value=81 Score=23.23 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 161 KTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 161 ~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
.+.+...|..|+.+++++|.+.|..++-..
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 467888888888888888888888877554
No 356
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=33.60 E-value=5.1e+02 Score=26.03 Aligned_cols=158 Identities=10% Similarity=-0.017 Sum_probs=89.0
Q ss_pred hchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhh
Q 039154 47 KELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWF 126 (211)
Q Consensus 47 ~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l 126 (211)
++.+-+|..+....+.||.+++.+|-.-.+.+.......+.+.-+..-+++.-..+|.+...++..+. .++..-...+
T Consensus 73 k~~ldlf~klas~l~~~r~~aa~~Ll~~lq~~~~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~--~~kai~a~~v 150 (1129)
T KOG1926|consen 73 KEKLDLFTKLASSLRPVRLAAAFQLLADLQELRDAEELSYVLNRLIRGLSSDRESARLGFSLILTEVL--RPKAIEATSV 150 (1129)
T ss_pred hHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhh--ccccchHHHH
Confidence 34455555544457888988888886554444444555666655555555777889999888888877 2221111234
Q ss_pred HHHHHHhhcCCC-----------chHHHhHHhHHHh---hc--cCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154 127 IPLVKRLAAGEW-----------FTARVSACGLFHI---AY--PSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLRK 189 (211)
Q Consensus 127 ~p~i~~l~~d~~-----------~~vR~~~a~~l~~---l~--~~~~~~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~ 189 (211)
+..+.+...-.+ .-.+......+.. +. ...+.. ....+.....+|.--.. +.-.-|+..+-.
T Consensus 151 L~~i~~~~~~~~~~~~gkd~k~~~~G~Lf~l~si~~s~~l~~~~s~k~~e~~~~f~~~l~~LA~kk~-~L~~~c~~il~~ 229 (1129)
T KOG1926|consen 151 LSTILQVLLVSSAKMKGKDEKLVAFGNLFGLESILQSGILKEASSVKKDEKFKRFTDLLLQLALKKN-WLQEPCVEILLL 229 (1129)
T ss_pred HHHHHHHHhhhcccccCccccchhhhhHHHHHHHHhhhHHHhhhhccccHHHHHHHHHHHHHhhhHH-HHHhHHHHHHHH
Confidence 444443211111 1223333333321 11 111111 34556666666655444 667888888999
Q ss_pred HHhhhCchhhHHHHHHHH
Q 039154 190 FAATVEPAHLKTDIMSIF 207 (211)
Q Consensus 190 ~~~~~~~~~~~~~llp~~ 207 (211)
..+.+++.-+.++.++.+
T Consensus 230 sv~qlp~~~~~~~~~ea~ 247 (1129)
T KOG1926|consen 230 SVKQLPASPFEEHVLEAL 247 (1129)
T ss_pred HHHhccchHHHHHHHHhh
Confidence 999888876666655544
No 357
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=33.35 E-value=1.9e+02 Score=22.27 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcC
Q 039154 99 ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAG 136 (211)
Q Consensus 99 ~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d 136 (211)
+..||..|++.| +.++.+++..++..++..+--|
T Consensus 89 ~~~Vr~yAV~~L----~~~~d~~l~~yLpQLVQaLr~E 122 (184)
T smart00145 89 DPFVRAYAVERL----ESASDEELLLYLLQLVQALKYE 122 (184)
T ss_pred CHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHcc
Confidence 578999999887 4577888888888888777656
No 358
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=32.70 E-value=2.1e+02 Score=23.28 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=37.2
Q ss_pred CChHHHHHHHHHHHhccccccCc---cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhh
Q 039154 58 DDDDEVLLAMAEELGVFIPYVGG---VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLA 134 (211)
Q Consensus 58 D~~~~VR~~~a~~L~~l~~~ig~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~ 134 (211)
+-+..||.++..+|..++. .|+ +...+++-.++...++.+...+--.-+.++..+ .+ ..++|.|+++.
T Consensus 124 ~~~~yvR~aa~~aL~~l~~-~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL----~~----~EL~~~I~~~f 194 (249)
T PF06685_consen 124 DADEYVRMAAISALAFLVH-EGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDL----YP----EELLPEIRKAF 194 (249)
T ss_pred cHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhc----CH----HHhHHHHHHHH
Confidence 3456699999999988775 232 333344445555544433333222222222222 22 34666677666
Q ss_pred cCCC
Q 039154 135 AGEW 138 (211)
Q Consensus 135 ~d~~ 138 (211)
.+.-
T Consensus 195 ~~~l 198 (249)
T PF06685_consen 195 EDGL 198 (249)
T ss_pred HcCC
Confidence 6543
No 359
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=32.61 E-value=95 Score=23.62 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=21.5
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHHHhCC
Q 039154 13 VLTDELKN-DDIQLRLNSIRRLSTIARALGE 42 (211)
Q Consensus 13 ~l~~~l~s-~~~~~R~~a~~~l~~ia~~lg~ 42 (211)
.+++.|.+ ..|.+.++++..++-|+..+|.
T Consensus 80 ~iie~L~~D~rPSVKLA~iSLlSiIiek~~~ 110 (180)
T PHA02855 80 QIIESLNNDNRPSVKLAIISLISMIAEKKGY 110 (180)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 45555644 4488888888888888888886
No 360
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.87 E-value=5e+02 Score=25.40 Aligned_cols=178 Identities=16% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHH
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l 91 (211)
.+.+..++.|.-.|....+-...=.+.+.+-....+++..+.. ....+|.-|.-+..-+|.+..++.......+++ .
T Consensus 67 rLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEfn~~hhlI--r 144 (970)
T KOG1988|consen 67 RLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPEFNQVHHLI--R 144 (970)
T ss_pred HHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcccccchhHHH--H
Q ss_pred hhhccchhhHHH--HHHHHHHHHHHhhcChhHHHHh----------------hHHHHHHhhcCCC--chHHHhHHhHHHh
Q 039154 92 ETLCTVEETCMR--DKAVESLCRIGSQMRESDLVDW----------------FIPLVKRLAAGEW--FTARVSACGLFHI 151 (211)
Q Consensus 92 ~~l~~d~~~~VR--~~a~~~l~~l~~~l~~~~~~~~----------------l~p~i~~l~~d~~--~~vR~~~a~~l~~ 151 (211)
..+-+.++-++| ..|..++.+..+.+.-....+. ++|.+..|..+.. .+++.-|-.+++.
T Consensus 145 ~sl~S~helE~eaa~~Aaa~Faa~sk~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~A~ra~~l~m~lv~~ 224 (970)
T KOG1988|consen 145 ISLDSHHELEVEAAEFAAACFAAQSKDFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATGASRAFGLCMSLVSG 224 (970)
T ss_pred HHhcCccchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhhhHHHHHHHHHHhcC
Q ss_pred -------------hccCCChH--HHHHHHHHHHHhcC-CCCHHHHHHHHHhhHHHHh
Q 039154 152 -------------AYPSAPDI--LKTELRSIYTQLCQ-DDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 152 -------------l~~~~~~~--~~~~l~~~~~~L~~-D~~~~VR~aaa~~l~~~~~ 192 (211)
+....... ...+....+...++ |+...||+.+...+..++.
T Consensus 225 tps~d~~v~fL~stT~Lasrs~~ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 225 TPSIDRVVAFLYSTTNLASRSLVAISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred CCcccceeeehhhhHHHHHHHHHHhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
No 361
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=31.81 E-value=3.7e+02 Score=23.89 Aligned_cols=93 Identities=20% Similarity=0.127 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCC-chHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCC
Q 039154 101 CMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEW-FTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM 176 (211)
Q Consensus 101 ~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~-~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~ 176 (211)
..|..|++.+.+..+.++.+.+.. +.-..+.|...+. -.+|.++.+.+-++...-... .+..++.....-..|++
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~-iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d 83 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEE-IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDD 83 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHH-HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchh
Confidence 345566666666666655533222 4444444444432 245666666655554443221 23333333333334444
Q ss_pred HHHHHHHHHhhHHHHhhh
Q 039154 177 PMVRRSAASNLRKFAATV 194 (211)
Q Consensus 177 ~~VR~aaa~~l~~~~~~~ 194 (211)
..-|-.+..+|-+=++-+
T Consensus 84 ~~~~l~aL~~LT~~Grdi 101 (464)
T PF11864_consen 84 FDLRLEALIALTDNGRDI 101 (464)
T ss_pred HHHHHHHHHHHHcCCcCc
Confidence 445555555554444443
No 362
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=31.03 E-value=1.9e+02 Score=21.74 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=18.8
Q ss_pred hhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (211)
Q Consensus 125 ~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~ 159 (211)
.++|.+..+.+++..+....++..+..+...+++.
T Consensus 69 ~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~ 103 (164)
T PF13925_consen 69 DLLPLIEELLQSKYESYISVALEMLRSILKKFGPV 103 (164)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555554444443
No 363
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=30.94 E-value=1.4e+02 Score=28.36 Aligned_cols=159 Identities=13% Similarity=0.009 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHH--------HHHHHHHHHhccccccCccc---cccccchH-H
Q 039154 25 LRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDE--------VLLAMAEELGVFIPYVGGVE---HAHVLLPP-L 91 (211)
Q Consensus 25 ~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~--------VR~~~a~~L~~l~~~ig~~~---~~~~llp~-l 91 (211)
+-..++..+. +|...|-+...-.+.|++.. +.-+... ||-+.+--+-.+..--+... ..+.+.-. +
T Consensus 314 ~w~~~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~ 392 (993)
T COG5234 314 VWHGAILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLL 392 (993)
T ss_pred HHHHHHHHHH-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHH
Confidence 3344444443 66666666555557777776 6554443 33222222222211100000 11112222 3
Q ss_pred hhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCc-hHHHhHHhHHHhhccC---CChH--HHHHHH
Q 039154 92 ETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWF-TARVSACGLFHIAYPS---APDI--LKTELR 165 (211)
Q Consensus 92 ~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~-~vR~~~a~~l~~l~~~---~~~~--~~~~l~ 165 (211)
...+-|++-.||.+|..++-++...--+......++..+ +| .|.. ..++-+.++.. .++- +.+-+.
T Consensus 393 ~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIslI-------N~~sv~r-~s~csg~~~r~~~~~~k~~~CedVF~ 464 (993)
T COG5234 393 QTALFDPELNVRRAATAALFEVIGRHASIADGLSLISLI-------NYVSVTR-ISNCSGDLCRKVAHFPKFRSCEDVFQ 464 (993)
T ss_pred hhhhcCchhhhhhHHHHHHHHHhccCCCcccchhhhhhc-------cceecch-hhhcchHHHHHhcCccccchHHHHHH
Confidence 336678999999999999888776632222223333333 22 1111 12222222222 2221 334455
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 166 SIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
..+++-+..=++.|+...+.++..+.+
T Consensus 465 diLl~Nl~H~~~~~k~~~~y~l~~liK 491 (993)
T COG5234 465 DILLTNLQHWDVKVKQLSAYSLRQLIK 491 (993)
T ss_pred HHHHhhhhccchhhhhhccccHHHHhc
Confidence 555666667788899999999888855
No 364
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=30.84 E-value=3.8e+02 Score=23.75 Aligned_cols=66 Identities=17% Similarity=0.095 Sum_probs=42.8
Q ss_pred hHHHHHHhhcCCC-chHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154 126 FIPLVKRLAAGEW-FTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 126 l~p~i~~l~~d~~-~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
++..+.++.+..+ ..+-..||.=++.+....+.- .+-.-....++|++.++|+||..|..++..+.
T Consensus 367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 4555555433322 233456666677776655443 22334577899999999999999999887664
No 365
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.20 E-value=2.4e+02 Score=25.75 Aligned_cols=75 Identities=12% Similarity=0.004 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCC
Q 039154 62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGE 137 (211)
Q Consensus 62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~ 137 (211)
++...+.+.|..+.+. .-++..+..+-++.++.-|..-.-++-+..-++.++..++.+.....-+..+-.++.|+
T Consensus 341 M~~~~iveKL~klfp~-~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD 415 (791)
T KOG1222|consen 341 MEQNGIVEKLLKLFPI-QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDD 415 (791)
T ss_pred HHhccHHHHHHHhcCC-CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCc
Confidence 3444445555554442 12222333334444444444444444444556666666655544444444444444333
No 366
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=30.05 E-value=3.3e+02 Score=22.80 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=68.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c----CCCh----HHHH--HHHHHHHhccccccCcc----cc
Q 039154 19 KNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-N----NDDD----DEVL--LAMAEELGVFIPYVGGV----EH 83 (211)
Q Consensus 19 ~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~----~D~~----~~VR--~~~a~~L~~l~~~ig~~----~~ 83 (211)
...+...|......+ .+=+.+|.+-|++++++++.- . ...+ ..|. +.+.+.|.-+ +...++ ..
T Consensus 86 ~p~~y~~~~~~~DYf-~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~-~~~~~~~~Ii~d 163 (292)
T PF13929_consen 86 DPQNYSVRRFINDYF-LLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLY-DGLNPDESIIFD 163 (292)
T ss_pred CcccCCHHHHHHHHH-HHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHh-hccCcccceeeC
Confidence 344445554333333 455789999999999999874 1 1221 2342 2334444332 212221 12
Q ss_pred ccccchHHhhhccchhhHHHHHHH-HHHHHHHhhcChhHHHHhhHHHHHHhhcCCCch
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAV-ESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFT 140 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~-~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~ 140 (211)
.+.+..+|..+..|++. ...|. +-+.-+...++.....+.+.+.+..|++-..|.
T Consensus 164 ~evislLL~sMv~~~~~--~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 164 EEVISLLLKSMVIDENT--KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hHHHHHHHHHHHhcccc--chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 34556678888887766 33333 333444555666666778889999999999885
No 367
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=29.89 E-value=99 Score=16.69 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=20.7
Q ss_pred HHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHH
Q 039154 145 ACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR 181 (211)
Q Consensus 145 ~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~ 181 (211)
++..++-++..-+.+ +.+..+..++.|.+..+|+
T Consensus 2 A~lgLGl~~aGs~~~---~~~~~L~~~l~~~~~~~~~ 35 (35)
T PF01851_consen 2 AILGLGLIYAGSGNE---EVLDLLRPYLSDTSNEMIQ 35 (35)
T ss_dssp HHHHHHHHTTTT--H---HHHHHHHHHHCTSSHHHHH
T ss_pred cHHHHHHHHcCCCCH---HHHHHHHHHHHhccccccC
Confidence 344555555554433 6777777778888877764
No 368
>KOG1974 consensus DNA topoisomerase I-interacting protein [Replication, recombination and repair]
Probab=28.40 E-value=1.5e+02 Score=29.70 Aligned_cols=57 Identities=28% Similarity=0.297 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc-chhhchhhhhhhcCCChHHHHHHHHHHHhcccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE-RTPKELIPFLSANNDDDDEVLLAMAEELGVFIP 76 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~-~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~ 76 (211)
|..|+-+|+-+|.+.| .+...+|.- ...++|+|++..-.++.+.+ ..++..+.++..
T Consensus 36 LKDL~RyLr~~Dd~~r--------~vr~~vg~~qiVt~DLiPIL~~~~~d~~l~-~~~ir~lvnlt~ 93 (1229)
T KOG1974|consen 36 LKDLKRYLRYVDDTLR--------TVRRAVGAGQIVTSDLIPILIDWDKDDALF-DNVIRLLVNLTQ 93 (1229)
T ss_pred HHHHHHHHHhcCchHH--------HHHHHHhhHhhhhhhhhhhhhhhccccHHH-HHHHHHhccccc
Confidence 6677778888887765 344455553 46789999998744444443 444555555544
No 369
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=28.14 E-value=98 Score=21.31 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhhHHHHhh-hCchhhHHH
Q 039154 162 TELRSIYTQLCQD-DMPMVRRSAASNLRKFAAT-VEPAHLKTD 202 (211)
Q Consensus 162 ~~l~~~~~~L~~D-~~~~VR~aaa~~l~~~~~~-~~~~~~~~~ 202 (211)
+.|+..+++|.+| ..|+|...+-.-+..++.. +.+|++...
T Consensus 7 k~FL~tLi~las~~~spev~~~Vr~LV~~L~~~~i~~EeF~~~ 49 (96)
T PF07531_consen 7 KNFLNTLIQLASDKQSPEVGENVRELVQNLVDGKIEAEEFTSK 49 (96)
T ss_dssp HHHHHHHHHHHCCSC-CCHHHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456666677777 6666666555555544443 344544443
No 370
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=27.95 E-value=1.1e+02 Score=28.05 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 165 RSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 165 ~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
....+.+++|+.|.|...+.+-|.++..
T Consensus 518 ~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 518 VEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred HHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 3556889999999999999999988876
No 371
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=27.60 E-value=4e+02 Score=25.78 Aligned_cols=58 Identities=17% Similarity=0.048 Sum_probs=24.8
Q ss_pred CCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhh
Q 039154 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQ 116 (211)
Q Consensus 57 ~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~ 116 (211)
.|.-++|+.-+...+..+.. +.++....||-.+.+-+.|.+..|-..|...|-.|...
T Consensus 314 ~D~L~~vk~raL~ti~~lL~--~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~ 371 (988)
T KOG2038|consen 314 KDPLEEVKKRALKTIYDLLT--NKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAK 371 (988)
T ss_pred cccHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhh
Confidence 34444444444444433332 23333344444444444444444444444444444333
No 372
>PF14961 BROMI: Broad-minded protein
Probab=27.38 E-value=3.9e+02 Score=27.13 Aligned_cols=69 Identities=16% Similarity=0.078 Sum_probs=54.0
Q ss_pred HHHHhhcCCCchHHHhHHhHHHhhc--cCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 129 LVKRLAAGEWFTARVSACGLFHIAY--PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 129 ~i~~l~~d~~~~vR~~~a~~l~~l~--~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
++.++-.+.--.||..+...+..+. ..++.++|+.|..-+...+.|+++.+...+.+-..++.+.-+..
T Consensus 166 i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~ 236 (1296)
T PF14961_consen 166 IADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLN 236 (1296)
T ss_pred HHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchh
Confidence 3455555666789999998887663 34566689999999999999999999999988887777765544
No 373
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=27.26 E-value=4.5e+02 Score=23.38 Aligned_cols=169 Identities=12% Similarity=0.029 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccCc--cccccccchHHhhhccc
Q 039154 22 DIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTV 97 (211)
Q Consensus 22 ~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~~d 97 (211)
...+|..|++.+.........+. ..++--.... +.. ...++|+++.+-|...++.-+. .......+..+..-..+
T Consensus 3 ~l~~R~~a~~~l~~~i~~~~~~~-i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQKYPLSS-IEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred CHHHHHHHHHHHHHHHHhCCchH-HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 46789999999988876666522 1222222223 332 3467999999988887763221 11112233333334445
Q ss_pred hhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHH------------------------hHHhHH----
Q 039154 98 EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARV------------------------SACGLF---- 149 (211)
Q Consensus 98 ~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~------------------------~~a~~l---- 149 (211)
++..-|..|..+|-+=|..+.. +...+.|++.++...-.-.+|. .....|
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~ 159 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLV 159 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHH
Confidence 5566788888888877777733 4455555554443321100000 111111
Q ss_pred --Hhh-ccCCChHHHHHHHHHHHHhcCCCC-HHHHHHHHHhhHHHHhh
Q 039154 150 --HIA-YPSAPDILKTELRSIYTQLCQDDM-PMVRRSAASNLRKFAAT 193 (211)
Q Consensus 150 --~~l-~~~~~~~~~~~l~~~~~~L~~D~~-~~VR~aaa~~l~~~~~~ 193 (211)
.++ +..+.++....++.....+|.-.+ ...=+++..-+..++..
T Consensus 160 nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y 207 (464)
T PF11864_consen 160 NVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY 207 (464)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Confidence 111 122333456667777777776544 33346777777777773
No 374
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=27.08 E-value=2.2e+02 Score=19.82 Aligned_cols=38 Identities=21% Similarity=0.067 Sum_probs=26.4
Q ss_pred cccccchHHhhhcc-chhhHHHHHHHHHHHHHHhhcChh
Q 039154 83 HAHVLLPPLETLCT-VEETCMRDKAVESLCRIGSQMRES 120 (211)
Q Consensus 83 ~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~ 120 (211)
....++|.+.+.++ ....+.|.++.-.+..++.+.+-+
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~ 41 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS 41 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc
Confidence 34456777777666 556678888888888887776543
No 375
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.91 E-value=3.9e+02 Score=26.39 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=61.1
Q ss_pred hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH------HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC---c
Q 039154 126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI------LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE---P 196 (211)
Q Consensus 126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~------~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~---~ 196 (211)
++-....+.++++-+.|..+..++....+.+... .....-|..+.-+.+.+|.+=.-|.+.+.++++..| .
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 5555677889999999999988887665554432 122233445666778888888888999999988877 4
Q ss_pred hhhHHHHHHHHHhh
Q 039154 197 AHLKTDIMSIFEDL 210 (211)
Q Consensus 197 ~~~~~~llp~~~~L 210 (211)
..+.++++|-++.+
T Consensus 884 sR~l~dvlP~l~~~ 897 (1014)
T KOG4524|consen 884 SRFLEDVLPWLKHL 897 (1014)
T ss_pred HHHHHHHHHHHHHH
Confidence 67778888887643
No 376
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=25.81 E-value=5.7e+02 Score=24.13 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=86.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhhcCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
|..++..|.|.+..+...+-+.+... +..+ ..-+.|+-|+.+ -.+..+... ++. +..+ ....+
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~---~~~~~~~~l~~~l~~y~~~--t~s~~~~~i-------l~~-~~~P-~~K~~ 71 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQEL---LNSDREPWLVNGLVDYYLS--TNSQRALEI-------LVG-VQEP-HDKHL 71 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHH---hhccchHHHHHHHHHHHhh--cCcHHHHHH-------HHh-cCCc-cHHHH
Confidence 66788888888888877666655543 2222 122333333332 222222111 111 2222 22456
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhcChhH---HHHhhH-HHHHHhhcCCCchHHHhHHhHHHhhccCCChH---H
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESD---LVDWFI-PLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---L 160 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~---~~~~l~-p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~ 160 (211)
+..+...+.. ..-|..++.-|+.++..-++-. ...-++ .+++-|-.|.+-.+=.++...+..+.+.++.. +
T Consensus 72 ~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~ 149 (668)
T PF04388_consen 72 FDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPH 149 (668)
T ss_pred HHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHH
Confidence 6666666654 3568888888888887765532 222344 33444566777777777777777777776655 6
Q ss_pred HHHHHHHHHHhc
Q 039154 161 KTELRSIYTQLC 172 (211)
Q Consensus 161 ~~~l~~~~~~L~ 172 (211)
..+|+.+|..|+
T Consensus 150 L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 150 LPDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHHH
Confidence 788999999987
No 377
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=25.65 E-value=3.5e+02 Score=21.64 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCCC--HHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154 161 KTELRSIYTQLCQDDM--PMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDL 210 (211)
Q Consensus 161 ~~~l~~~~~~L~~D~~--~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L 210 (211)
...++..++..+.++. +.+=.++..+|..+++.=+ .+...++|.+.++
T Consensus 112 a~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP--~~~~~Il~~ll~~ 161 (239)
T PF11935_consen 112 ANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP--QFMSRILPALLSF 161 (239)
T ss_dssp HHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG--GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhc
Confidence 4567788888887776 7888888888888888533 3466888887654
No 378
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=25.22 E-value=4.7e+02 Score=22.98 Aligned_cols=102 Identities=21% Similarity=0.211 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH--HhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC----cc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIAR--ALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG----GV 81 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~--~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig----~~ 81 (211)
+...+.+.++.+-..|+.+...+...+. .+..- ..+..+...+.. .+....+=-..++.-++.++-..| ++
T Consensus 62 ~~d~lde~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~e 141 (427)
T KOG2842|consen 62 LKDDLDEVKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEE 141 (427)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhh
Confidence 4455666778888889988877654432 22211 112233333344 333333333333334444333333 23
Q ss_pred ccccccchHHhhhccchhhHH--HHHHHHHHHH
Q 039154 82 EHAHVLLPPLETLCTVEETCM--RDKAVESLCR 112 (211)
Q Consensus 82 ~~~~~llp~l~~l~~d~~~~V--R~~a~~~l~~ 112 (211)
+.....-|.+..+..|+...| |..+..++..
T Consensus 142 e~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v 174 (427)
T KOG2842|consen 142 EWTKTLGPFLALILDDESASIKARSICATSLGT 174 (427)
T ss_pred HHHhccchHHHHHhhccccchHHHHHHHHHHHH
Confidence 334455666666777776555 5555554443
No 379
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=24.97 E-value=1.6e+02 Score=17.41 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=25.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA 55 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~ 55 (211)
.+.+...-++++.|..+++.+..+-..++.+..++..+..+.+
T Consensus 8 ~l~~~~dl~~~egk~~~~~~~~~~i~~i~~~i~r~~y~~~la~ 50 (59)
T PF10410_consen 8 RLSKGYDLDTPEGKAEAVREAAPLIAQIPDPIERELYIRELAE 50 (59)
T ss_dssp HHGGGS-TTSHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444567888888888777776666665555555555444
No 380
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=24.82 E-value=3.2e+02 Score=20.85 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154 177 PMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDL 210 (211)
Q Consensus 177 ~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L 210 (211)
+.||+-|.+.|.. ++.+.+...+..+++.|
T Consensus 85 ~~VR~yAV~~L~~----~sd~eL~~yL~QLVQaL 114 (171)
T cd00872 85 EHVREFAVRCLEK----LSDDELLQYLLQLVQVL 114 (171)
T ss_pred HHHHHHHHHHHHh----CCHHHHHHHHHHHHHHH
Confidence 7888888877754 45567777776666543
No 381
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=24.13 E-value=3.6e+02 Score=21.99 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=64.5
Q ss_pred cccchHHhhhccchh-hHHHHHHHHHHHHHHhhcChhHH----HHhhHHHHHHhhcCCCchHHHhHHhHHHhhc-cCCCh
Q 039154 85 HVLLPPLETLCTVEE-TCMRDKAVESLCRIGSQMRESDL----VDWFIPLVKRLAAGEWFTARVSACGLFHIAY-PSAPD 158 (211)
Q Consensus 85 ~~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l~~~~~----~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~-~~~~~ 158 (211)
-++.|.+....+... +-.|..+...++.+.+.-+++.+ ...++|+..+..+..+.-.+..++.+++.+. ...|-
T Consensus 144 lflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dDvGL 223 (315)
T COG5209 144 LFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGL 223 (315)
T ss_pred eeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhH
Confidence 345677776666654 45799999888888888777644 3457888888777766655555555555432 11221
Q ss_pred -----------------------------H-HHHHHHHHHHHhcCCCCHHHHHHHHHhhH
Q 039154 159 -----------------------------I-LKTELRSIYTQLCQDDMPMVRRSAASNLR 188 (211)
Q Consensus 159 -----------------------------~-~~~~l~~~~~~L~~D~~~~VR~aaa~~l~ 188 (211)
. ..+..+.+|++||.++ ..|...-..++
T Consensus 224 qYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p--~aR~lL~~~lP 281 (315)
T COG5209 224 QYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP--HARALLSSKLP 281 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH--hHHHHHhccCC
Confidence 1 3456778888888764 45665554443
No 382
>PHA02861 uncharacterized protein; Provisional
Probab=23.95 E-value=3.1e+02 Score=20.36 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=25.6
Q ss_pred HHhccccccCcccc----ccccchHHhhhccchh-hHHHHHHHHHHHH
Q 039154 70 ELGVFIPYVGGVEH----AHVLLPPLETLCTVEE-TCMRDKAVESLCR 112 (211)
Q Consensus 70 ~L~~l~~~ig~~~~----~~~llp~l~~l~~d~~-~~VR~~a~~~l~~ 112 (211)
-+...+++.||++. .-..+-++.+|++|.+ ..||....--|.+
T Consensus 100 L~A~~AeYWGged~Pt~~S~~vl~l~~~Llsd~d~~~i~~~l~vRl~k 147 (149)
T PHA02861 100 LCASLAEYWGGEDLPTNDSLQALKLMTILLSDDDYSFIELCLRVRLKK 147 (149)
T ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHHHh
Confidence 34566667887662 3345667788888887 4455554444443
No 383
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=23.74 E-value=1.8e+02 Score=17.51 Aligned_cols=31 Identities=16% Similarity=0.077 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Q 039154 160 LKTELRSIYTQLCQDDMPMVRRSAASNLRKF 190 (211)
Q Consensus 160 ~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~ 190 (211)
+-+++..++.+-..-=+|+.|.+.+++|--+
T Consensus 16 Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 16 FPQELIDLLRNHHTVLDPDLRMKLVKALILL 46 (52)
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 4456777777777777899999999888543
No 384
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=23.14 E-value=2.5e+02 Score=19.11 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHhhHHHHhh-hCchhhHHHH
Q 039154 162 TELRSIYTQLCQDDM-PMVRRSAASNLRKFAAT-VEPAHLKTDI 203 (211)
Q Consensus 162 ~~l~~~~~~L~~D~~-~~VR~aaa~~l~~~~~~-~~~~~~~~~l 203 (211)
..|+..+++|.+|.. |+|-..+-.-+..++.. +.+|++...|
T Consensus 6 k~FL~tLi~ls~~~~qpe~~~~Vr~LV~~L~~~~i~~EeF~~~L 49 (92)
T smart00549 6 KRFLTTLIQLSNDISQPEVAERVRTLVLGLVNGTITAEEFTSRL 49 (92)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345666677777777 55544444444443332 4555555444
No 385
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=22.80 E-value=1.2e+02 Score=29.36 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=30.5
Q ss_pred chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCC
Q 039154 97 VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGE 137 (211)
Q Consensus 97 d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~ 137 (211)
..+..||..|+.+| +.++++++..++++++..+--.+
T Consensus 622 ypD~~VR~fAV~~L----~~Lsdd~l~~YLLqLVQalKyEp 658 (1076)
T KOG0904|consen 622 YPDPNVRAFAVRCL----EQLSDDDLLQYLLQLVQALKYEP 658 (1076)
T ss_pred CCcHHHHHHHHHHH----HhcChhHHHHHHHHHHHHHhccc
Confidence 44789999999998 78889999999999987764443
No 386
>PF09531 Ndc1_Nup: Nucleoporin protein Ndc1-Nup; InterPro: IPR019049 Ndc1 is a nucleoporin protein that is a component of the Nuclear Pore Complex, and, in fungi, also of the Spindle Pole Body. It consists of six transmembrane segments, three luminal loops, both concentrated at the N terminus and cytoplasmic domains largely at the C terminus, all of which are well conserved.
Probab=22.79 E-value=2e+02 Score=26.50 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=34.9
Q ss_pred CCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc
Q 039154 5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEE 43 (211)
Q Consensus 5 ~~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~ 43 (211)
..+-+|..-|+..|++.++-.|.-|.+.|..+|..-+..
T Consensus 283 ~~s~dp~~tLl~gL~~~~p~~q~~Af~eL~~iA~~~~~r 321 (602)
T PF09531_consen 283 SFSKDPNGTLLSGLKSKKPLVQLLAFQELAYIAQSSPSR 321 (602)
T ss_pred CCCCCchHHHHHHHcCCCcHHHHHHHHHHHHHHhCCCch
Confidence 456789999999999999999999999999999877765
No 387
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.68 E-value=2.4e+02 Score=26.74 Aligned_cols=71 Identities=13% Similarity=-0.022 Sum_probs=48.1
Q ss_pred hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
+-+.|..+.+-....|+.-+..++.+..+.++-+....++|.+..|+.+....=+...+..|-+++..||+
T Consensus 677 iK~sI~s~~kl~D~sV~ADvL~Iltek~eiLtLDl~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt 747 (825)
T KOG0267|consen 677 IKGSIGSLRKLADNSVQADVLNILTEKIEILTLDLCTQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGT 747 (825)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhh
Confidence 33334333333334466666677777777777776777888888888888777777777777777777775
No 388
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.58 E-value=4.9e+02 Score=22.23 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhHHHHhhhCch
Q 039154 177 PMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 177 ~~VR~aaa~~l~~~~~~~~~~ 197 (211)
..+|..||.-++-+.+.|+..
T Consensus 301 ~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 301 YALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred HHHHHHHHHHHHHHHhhhhHh
Confidence 468999998888888877753
No 389
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=22.55 E-value=4.3e+02 Score=26.94 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCcchhhchhhhhhh--cCCChHHHHHHHHHHHhccccc------cCccccccccchHHhhhccch
Q 039154 27 LNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPY------VGGVEHAHVLLPPLETLCTVE 98 (211)
Q Consensus 27 ~~a~~~l~~ia~~lg~~~~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~------ig~~~~~~~llp~l~~l~~d~ 98 (211)
.+.++.-+.+|+.+|++...--.+|.+.. .....+.|..-+.+.+..+..+ +-.......++.+|..+
T Consensus 1750 ~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~---- 1825 (2235)
T KOG1789|consen 1750 ANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQ---- 1825 (2235)
T ss_pred HHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcC----
Q ss_pred hhHHHHHHHHHHHHHHhh--cChhHHHH-hhHHHHHHhhcCCCchHHHhHHhHHHhh--ccCCChH----HHHHHHHHHH
Q 039154 99 ETCMRDKAVESLCRIGSQ--MRESDLVD-WFIPLVKRLAAGEWFTARVSACGLFHIA--YPSAPDI----LKTELRSIYT 169 (211)
Q Consensus 99 ~~~VR~~a~~~l~~l~~~--l~~~~~~~-~l~p~i~~l~~d~~~~vR~~~a~~l~~l--~~~~~~~----~~~~l~~~~~ 169 (211)
++.|+.+...|..+... +..+...+ -++-+..-+|...+-.+|..+|++|+++ -+..|+. ..+.|=..|.
T Consensus 1826 -PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~ 1904 (2235)
T KOG1789|consen 1826 -PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFA 1904 (2235)
T ss_pred -hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHH
Q ss_pred HhcCCC
Q 039154 170 QLCQDD 175 (211)
Q Consensus 170 ~L~~D~ 175 (211)
..+.|.
T Consensus 1905 d~~RD~ 1910 (2235)
T KOG1789|consen 1905 DSLRDS 1910 (2235)
T ss_pred HHHhcC
No 390
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=22.15 E-value=4.1e+02 Score=21.22 Aligned_cols=84 Identities=7% Similarity=0.039 Sum_probs=40.1
Q ss_pred hHHHHHHhhcCCC--chHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCC----C--------HHHHHHHHHhhHHHH
Q 039154 126 FIPLVKRLAAGEW--FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDD----M--------PMVRRSAASNLRKFA 191 (211)
Q Consensus 126 l~p~i~~l~~d~~--~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~----~--------~~VR~aaa~~l~~~~ 191 (211)
++..+.+...++. -..=.++...+..++..-+. +...+++.+.++-.+. . ..||++.=..|..+.
T Consensus 115 lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~-~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~ll 193 (239)
T PF11935_consen 115 LLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQ-FMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLHLL 193 (239)
T ss_dssp HHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGG-GHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433 22222333334444333222 3455666666655443 1 356666666666666
Q ss_pred hhhCchhhHHHHHHHHHhh
Q 039154 192 ATVEPAHLKTDIMSIFEDL 210 (211)
Q Consensus 192 ~~~~~~~~~~~llp~~~~L 210 (211)
+.=........|...+.++
T Consensus 194 k~~~~~~~~~~i~~~L~~l 212 (239)
T PF11935_consen 194 KHPASSPFQGRITQALTDL 212 (239)
T ss_dssp TSGGGGGGHHHHHHHHHHT
T ss_pred CCCCchhhHHHHHHHHHHH
Confidence 6544445566666666543
No 391
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=21.61 E-value=3.5e+02 Score=20.64 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHh
Q 039154 177 PMVRRSAASNLRKFAATVEPAHLKTDIMSIFED 209 (211)
Q Consensus 177 ~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~ 209 (211)
+.||+-|.+.|.. ++.+.+...+..++..
T Consensus 85 ~~VR~yAV~~L~~----~~ddeL~~yLpQLVQa 113 (169)
T cd00869 85 QEVRAHAVQWLAR----LSNDELLDYLPQLVQA 113 (169)
T ss_pred hHHHHHHHHHHHh----CCHHHHHHHHHHHHHH
Confidence 4577776666633 3445555555555543
No 392
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=21.60 E-value=4.5e+02 Score=21.49 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 039154 105 KAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184 (211)
Q Consensus 105 ~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa 184 (211)
.+++.+..+++.-+...+...+--+.++-..+.. .........++..+.+++....+..+..++....+++|....
T Consensus 134 ~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~----dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 134 EIAEALAQVAEAQGLPNLARILSSYAKGRFRDKD----DFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 4557777777555544444433333332222211 122233333444444445567888899999999999999999
Q ss_pred HhhHHHHhhhC
Q 039154 185 SNLRKFAATVE 195 (211)
Q Consensus 185 ~~l~~~~~~~~ 195 (211)
+-|..+...++
T Consensus 210 ~iL~~ll~~~d 220 (262)
T PF14225_consen 210 QILKVLLPHVD 220 (262)
T ss_pred HHHHHHhcccc
Confidence 99999988875
No 393
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=21.39 E-value=1.1e+02 Score=23.70 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154 163 ELRSIYTQLCQDDMPMVRRSAASNLRK 189 (211)
Q Consensus 163 ~l~~~~~~L~~D~~~~VR~aaa~~l~~ 189 (211)
-+-.+|.++-+|.++.||+|.-.++.+
T Consensus 139 Al~~lF~kiY~~addDvrRAM~KSf~E 165 (196)
T KOG1309|consen 139 ALNKLFQKIYSDADDDVRRAMMKSFSE 165 (196)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhhhh
Confidence 577889999999999999999888765
No 394
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Probab=21.32 E-value=5e+02 Score=21.81 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=52.8
Q ss_pred cchhhchhhhhhh--cCCChHHHHHH-----HHHHHhccccccCccccccccchHHhhhcc-chhhHHHHH--------H
Q 039154 43 ERTPKELIPFLSA--NNDDDDEVLLA-----MAEELGVFIPYVGGVEHAHVLLPPLETLCT-VEETCMRDK--------A 106 (211)
Q Consensus 43 ~~~~~~L~p~l~~--~~D~~~~VR~~-----~a~~L~~l~~~ig~~~~~~~llp~l~~l~~-d~~~~VR~~--------a 106 (211)
...+++.++.+.+ |...|..-|.+ .+.++|...-.+.+ ..-+-+|.++.|.. +-|...|.. .
T Consensus 111 RlLrQdP~E~lfSFiCSSNNNIaRIT~Mve~fc~~fG~~i~~~dg--~~~h~FPsl~~L~g~~~Ea~LR~~gfGYRAkYI 188 (323)
T KOG2875|consen 111 RLLRQDPIECLFSFICSSNNNIARITGMVERFCQAFGPRIIQLDG--VDYHGFPSLQALAGPEVEAELRKLGFGYRAKYI 188 (323)
T ss_pred HHHhcCcHHHHHHHHhcCCCcHHHHHHHHHHHHHhhCcceEeecC--cccccCccHHHhcCcHhHHHHHHcCcchhHHHH
Confidence 3445666676666 33333333332 34555555444444 33467899999985 346778763 3
Q ss_pred HHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHH
Q 039154 107 VESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSAC 146 (211)
Q Consensus 107 ~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a 146 (211)
..+...|.+.-+. ...+.++.+.+...+|.+.|
T Consensus 189 ~~ta~~l~~~~g~-------~~wLqsl~~~~yeear~~L~ 221 (323)
T KOG2875|consen 189 SATARALQEKQGG-------LAWLQSLRKSSYEEAREALC 221 (323)
T ss_pred HHHHHHHHHhccc-------chHHHHHhcccHHHHHHHHh
Confidence 3444444444333 34456666666666776554
No 395
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=20.60 E-value=6.4e+02 Score=22.79 Aligned_cols=66 Identities=21% Similarity=0.195 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH------HhCCcchhhchhhhhhh--cCCChHHHHHHHHHHHhcccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIAR------ALGEERTPKELIPFLSA--NNDDDDEVLLAMAEELGVFIP 76 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~------~lg~~~~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~ 76 (211)
++.+..++.|+|.+.-....-.++.+|+ .+-..++-+.|+..+.+ -.|++-++.+++..+|.+++=
T Consensus 317 l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 317 LDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 8888999999999988877777776654 23333566667777665 567788888899999988764
No 396
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=1.7e+02 Score=21.45 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCCChHHHHHHHHHHHhccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFI 75 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~ 75 (211)
-...++-|++-|+..+ |-+.++-+- -|+|.++.+|.+.+-.+.-..|-..+-++|..-.
T Consensus 48 H~lVi~tlk~~dp~RK--CfRmIgGvL----VErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~ 106 (140)
T KOG4098|consen 48 HKLVIETLKDLDPTRK--CFRMIGGVL----VERTVKEVLPILQTNKENIEKVIKKLTDQLVQKG 106 (140)
T ss_pred HHHHHHHHHhcChhhH--HHHHhccch----hhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4566777877777766 334443221 3688889999998766666667777766665543
No 397
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=20.26 E-value=3.8e+02 Score=20.08 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=41.4
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhch-----hhhhhh-cCCChHHHHHHHHHHHhcccc
Q 039154 8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKEL-----IPFLSA-NNDDDDEVLLAMAEELGVFIP 76 (211)
Q Consensus 8 ~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L-----~p~l~~-~~D~~~~VR~~~a~~L~~l~~ 76 (211)
+.-|+.+.+.|.-+|..--...+..|..++ ......+.+ +|.+.. ..+..+++-..++-.+..+..
T Consensus 57 l~vLdlFvdsl~e~ne~LvefgIgglCNlC---~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~ 128 (173)
T KOG4646|consen 57 LDVLDLFVDSLEEQNELLVEFGIGGLCNLC---LDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEF 128 (173)
T ss_pred hhHHHHHHHHhhcccHHHHHHhHHHHHhhc---cChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcC
Confidence 455788889998888777777777776654 222222222 355555 667777777777766665543
No 398
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=20.13 E-value=3.3e+02 Score=20.60 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=21.1
Q ss_pred CHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154 176 MPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDL 210 (211)
Q Consensus 176 ~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L 210 (211)
++.||+-|.+.|.. ++.+.+...|..++..|
T Consensus 91 ~~~VR~yAV~~L~~----~sd~eL~~yL~QLVQaL 121 (166)
T cd00870 91 NPVVRKYAVSRLKL----ASDEELLLYLLQLVQAL 121 (166)
T ss_pred CHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHH
Confidence 47788888888854 45567777776666543
No 399
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.05 E-value=6.5e+02 Score=22.68 Aligned_cols=84 Identities=10% Similarity=0.028 Sum_probs=56.6
Q ss_pred hhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCCC--CHHHHHHHHHhhHHHHhhhCc-
Q 039154 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDD--MPMVRRSAASNLRKFAATVEP- 196 (211)
Q Consensus 125 ~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~--~~~VR~aaa~~l~~~~~~~~~- 196 (211)
..+-.|++..++.+-+|-..+..+|-.+...+|.. ..++|++-++++.+.. .-.||.-+..-|......|+.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~ 117 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGP 117 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCC
Confidence 34444555555544456666666777777777765 3467777788887766 689999999999999999876
Q ss_pred hhhHHHHHHHHH
Q 039154 197 AHLKTDIMSIFE 208 (211)
Q Consensus 197 ~~~~~~llp~~~ 208 (211)
+-....+.-.++
T Consensus 118 ~~~~~~~~~~y~ 129 (470)
T KOG1087|consen 118 DGYLPDYYQIYD 129 (470)
T ss_pred CCcchhHHHHHH
Confidence 544444444443
No 400
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.05 E-value=3.5e+02 Score=21.82 Aligned_cols=70 Identities=14% Similarity=-0.002 Sum_probs=47.5
Q ss_pred hhHHHHH-HhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 125 WFIPLVK-RLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 125 ~l~p~i~-~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
..+|.+. .|++ -.+..|..+-..+..+...-|+. ...+|+..+...+...+-+|-+.+.+.|..++-..|
T Consensus 114 ~yLp~F~dGL~e-~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~ 187 (262)
T KOG3961|consen 114 PYLPLFFDGLAE-TDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVG 187 (262)
T ss_pred HHHHHHhhhhhh-cCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc
Confidence 3445443 3443 33445666656665555555544 467888888999999999999999999888877654
Done!