Query 039154
Match_columns 211
No_of_seqs 134 out of 729
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 11:15:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 1.1E-26 3.6E-31 205.6 22.2 207 4-210 5-211 (588)
2 1b3u_A Protein (protein phosph 99.9 1.4E-23 4.9E-28 185.5 14.4 191 19-210 136-332 (588)
3 2qk2_A LP04448P; mini spindles 99.8 6.9E-17 2.4E-21 128.9 17.4 183 13-199 19-212 (242)
4 1ibr_B P95, importin beta-1 su 99.7 3.1E-15 1.1E-19 128.2 16.5 186 11-197 219-442 (462)
5 3ltm_A Alpha-REP4; protein eng 99.6 3.7E-14 1.3E-18 110.3 18.0 153 8-191 18-171 (211)
6 3ltj_A Alpharep-4; protein eng 99.6 5.8E-14 2E-18 108.3 17.8 163 10-207 15-178 (201)
7 4fdd_A Transportin-1; heat rep 99.6 8.3E-15 2.8E-19 135.8 15.2 196 11-207 217-447 (852)
8 2qk1_A Protein STU2; STU2P, XM 99.6 2.6E-14 8.9E-19 114.9 14.4 187 13-199 20-227 (249)
9 3ltm_A Alpha-REP4; protein eng 99.6 7.1E-14 2.4E-18 108.6 14.6 157 9-196 50-207 (211)
10 4fdd_A Transportin-1; heat rep 99.6 4.2E-14 1.4E-18 131.0 14.3 184 11-197 258-476 (852)
11 1oyz_A Hypothetical protein YI 99.6 1E-13 3.6E-18 112.2 14.7 130 10-152 24-155 (280)
12 3ltj_A Alpharep-4; protein eng 99.5 1.6E-13 5.3E-18 105.9 14.1 152 10-192 46-198 (201)
13 1oyz_A Hypothetical protein YI 99.5 1.6E-13 5.4E-18 111.2 13.6 164 10-191 55-220 (280)
14 2bpt_A Importin beta-1 subunit 99.5 5.7E-13 2E-17 122.5 19.1 197 11-208 226-460 (861)
15 1u6g_C TIP120 protein, CAND1; 99.5 1.9E-13 6.5E-18 131.0 15.8 198 8-207 5-218 (1230)
16 1qgr_A Protein (importin beta 99.5 6.4E-13 2.2E-17 122.4 18.4 196 11-207 219-456 (876)
17 1u6g_C TIP120 protein, CAND1; 99.5 1.2E-13 4.1E-18 132.4 11.8 197 11-207 88-301 (1230)
18 1ibr_B P95, importin beta-1 su 99.5 1.1E-12 3.8E-17 112.3 16.5 198 11-208 174-414 (462)
19 2bpt_A Importin beta-1 subunit 99.5 1.2E-12 4.2E-17 120.3 17.0 183 11-195 268-485 (861)
20 4db8_A Armadillo-repeat protei 99.4 2.1E-12 7.1E-17 102.6 14.3 186 6-192 9-209 (252)
21 1qgr_A Protein (importin beta 99.4 2.6E-12 9E-17 118.4 17.1 183 11-195 261-482 (876)
22 4hxt_A De novo protein OR329; 99.4 6.4E-12 2.2E-16 99.2 15.5 182 9-192 2-199 (252)
23 2qk2_A LP04448P; mini spindles 99.4 7.2E-12 2.4E-16 99.6 15.4 167 40-209 7-183 (242)
24 4db6_A Armadillo repeat protei 99.4 4E-12 1.4E-16 98.3 13.2 181 10-192 13-209 (210)
25 2jdq_A Importin alpha-1 subuni 99.4 9.6E-12 3.3E-16 106.3 15.7 199 11-209 151-368 (450)
26 2jdq_A Importin alpha-1 subuni 99.4 1.7E-11 5.9E-16 104.7 16.1 183 10-192 108-305 (450)
27 4hxt_A De novo protein OR329; 99.4 1.1E-11 3.9E-16 97.7 13.6 186 10-197 45-246 (252)
28 2vgl_B AP-2 complex subunit be 99.3 4.2E-11 1.4E-15 107.1 17.3 176 9-193 13-190 (591)
29 4db8_A Armadillo-repeat protei 99.3 7.5E-12 2.6E-16 99.3 11.1 181 10-192 55-251 (252)
30 1wa5_B Importin alpha subunit; 99.3 2.2E-11 7.6E-16 107.0 14.9 186 11-196 217-416 (530)
31 1wa5_B Importin alpha subunit; 99.3 3.1E-11 1.1E-15 106.2 14.5 183 11-193 89-287 (530)
32 3l9t_A Putative uncharacterize 99.3 4E-11 1.4E-15 94.3 11.8 146 46-203 69-217 (240)
33 4b8j_A Importin subunit alpha- 99.3 6.1E-11 2.1E-15 104.0 13.0 181 11-193 76-274 (528)
34 2vgl_B AP-2 complex subunit be 99.3 8.2E-11 2.8E-15 105.2 14.0 177 11-194 88-270 (591)
35 1lrv_A LRV, leucine-rich repea 99.2 6.4E-12 2.2E-16 100.5 5.9 132 12-188 101-242 (244)
36 2qk1_A Protein STU2; STU2P, XM 99.2 1.7E-10 5.8E-15 92.6 12.4 158 11-171 62-234 (249)
37 4b8j_A Importin subunit alpha- 99.2 3.3E-10 1.1E-14 99.4 15.3 180 11-192 119-315 (528)
38 1te4_A Conserved protein MTH18 99.2 6.2E-12 2.1E-16 90.9 1.5 116 50-189 14-130 (131)
39 1lrv_A LRV, leucine-rich repea 99.1 5.3E-11 1.8E-15 95.2 5.1 135 10-188 75-219 (244)
40 3l9t_A Putative uncharacterize 99.1 1.2E-10 4.1E-15 91.6 7.0 117 84-210 69-186 (240)
41 2of3_A ZYG-9; multifunctional 99.1 6.8E-10 2.3E-14 89.5 11.5 179 14-198 51-242 (266)
42 4db6_A Armadillo repeat protei 99.0 2.1E-09 7.2E-14 82.8 11.6 147 45-193 9-168 (210)
43 1w63_A Adapter-related protein 99.0 3.8E-09 1.3E-13 94.9 14.2 101 10-116 108-209 (618)
44 1te4_A Conserved protein MTH18 99.0 8.5E-11 2.9E-15 84.9 1.6 121 7-152 10-131 (131)
45 1jdh_A Beta-catenin; beta-cate 99.0 1.9E-09 6.3E-14 94.0 9.8 178 10-189 228-423 (529)
46 4ffb_C Protein STU2; tubulin f 98.9 1.8E-08 6.3E-13 81.6 13.8 181 14-197 14-217 (278)
47 3tpo_A Importin subunit alpha- 98.9 2.1E-08 7.1E-13 88.3 14.7 180 11-194 253-451 (529)
48 3ul1_B Importin subunit alpha- 98.9 3.9E-08 1.3E-12 86.3 16.0 180 11-192 59-261 (510)
49 3tpo_A Importin subunit alpha- 98.9 2.2E-08 7.5E-13 88.2 14.0 188 11-198 164-412 (529)
50 3ul1_B Importin subunit alpha- 98.9 4.2E-08 1.4E-12 86.1 15.2 180 11-194 234-432 (510)
51 1jdh_A Beta-catenin; beta-cate 98.9 3.2E-08 1.1E-12 86.2 14.3 199 11-209 19-273 (529)
52 1xqr_A HSPBP1 protein; armadil 98.8 3.2E-08 1.1E-12 81.2 11.2 168 24-193 55-239 (296)
53 2z6h_A Catenin beta-1, beta-ca 98.8 9.8E-08 3.4E-12 85.9 15.3 198 11-208 16-269 (644)
54 3nmw_A APC variant protein; AR 98.8 9.9E-08 3.4E-12 80.2 13.8 184 11-195 129-337 (354)
55 2z6h_A Catenin beta-1, beta-ca 98.8 1.6E-08 5.6E-13 90.9 9.6 173 11-185 226-416 (644)
56 2z6g_A B-catenin; FULL-length, 98.8 8.1E-08 2.8E-12 88.5 14.0 199 11-209 152-406 (780)
57 2z6g_A B-catenin; FULL-length, 98.8 1.4E-08 4.7E-13 93.6 8.7 169 11-181 362-548 (780)
58 2vgl_A Adaptor protein complex 98.8 9.1E-08 3.1E-12 86.1 13.8 174 11-193 37-217 (621)
59 3now_A UNC-45 protein, SD10334 98.7 4.8E-07 1.6E-11 83.3 17.2 181 10-193 496-695 (810)
60 4ady_A RPN2, 26S proteasome re 98.7 3.1E-07 1.1E-11 85.3 14.6 168 11-192 474-676 (963)
61 1w63_A Adapter-related protein 98.7 8.4E-08 2.9E-12 86.2 10.5 172 11-192 36-208 (618)
62 2vgl_A Adaptor protein complex 98.7 6.1E-07 2.1E-11 80.7 16.1 102 11-117 113-218 (621)
63 1wa5_C Importin alpha RE-expor 98.7 2.8E-07 9.5E-12 86.6 14.2 132 62-194 376-527 (960)
64 3now_A UNC-45 protein, SD10334 98.6 7.7E-07 2.6E-11 82.0 15.3 178 11-192 538-737 (810)
65 3nmz_A APC variant protein; pr 98.6 1.3E-06 4.4E-11 75.8 14.1 183 11-194 245-452 (458)
66 3tjz_B Coatomer subunit gamma; 98.5 2.2E-07 7.6E-12 77.9 7.4 106 5-116 100-206 (355)
67 2of3_A ZYG-9; multifunctional 98.5 1.5E-06 5E-11 70.1 11.7 146 11-162 85-244 (266)
68 2iw3_A Elongation factor 3A; a 98.4 5.4E-06 1.9E-10 77.7 15.6 185 11-198 16-210 (986)
69 3nmw_A APC variant protein; AR 98.4 2.7E-06 9.3E-11 71.4 12.1 185 22-210 97-313 (354)
70 2db0_A 253AA long hypothetical 98.4 2.2E-05 7.7E-10 59.5 15.1 176 11-193 34-211 (253)
71 1xqr_A HSPBP1 protein; armadil 98.4 1E-05 3.5E-10 66.2 14.2 142 11-155 83-239 (296)
72 4ady_A RPN2, 26S proteasome re 98.3 1.7E-05 6E-10 73.8 16.5 184 11-207 434-656 (963)
73 4ffb_C Protein STU2; tubulin f 98.3 3.6E-06 1.2E-10 67.9 10.5 145 12-159 58-217 (278)
74 3b2a_A TON_1937, putative unch 98.3 7.4E-06 2.5E-10 64.3 11.2 192 10-205 34-231 (265)
75 3nmz_A APC variant protein; pr 98.3 1.5E-05 5.1E-10 69.1 14.0 186 21-210 212-429 (458)
76 1wa5_C Importin alpha RE-expor 98.3 7.9E-06 2.7E-10 76.7 13.1 175 20-196 372-586 (960)
77 2x19_B Importin-13; nuclear tr 98.2 1.7E-05 5.8E-10 74.1 13.9 169 25-197 423-604 (963)
78 1xm9_A Plakophilin 1; armadill 98.2 1.9E-05 6.4E-10 68.3 13.0 176 10-191 3-219 (457)
79 3opb_A SWI5-dependent HO expre 98.2 4.5E-05 1.5E-09 69.6 15.7 181 10-194 458-685 (778)
80 2x1g_F Cadmus; transport prote 98.2 4.8E-06 1.7E-10 78.1 9.1 139 62-209 436-584 (971)
81 2x1g_F Cadmus; transport prote 98.2 1.2E-05 4.1E-10 75.4 11.5 172 24-199 436-622 (971)
82 2iw3_A Elongation factor 3A; a 98.2 9E-05 3.1E-09 69.5 17.0 195 11-209 56-301 (986)
83 1xm9_A Plakophilin 1; armadill 98.1 0.00013 4.3E-09 63.1 15.6 104 11-116 46-173 (457)
84 3oc3_A Helicase MOT1, MOT1; re 98.0 6.9E-06 2.4E-10 72.0 6.3 160 23-191 242-403 (800)
85 3m1i_C Exportin-1; heat repeat 98.0 9.9E-06 3.4E-10 76.8 7.5 135 62-197 428-574 (1049)
86 3tjz_B Coatomer subunit gamma; 98.0 0.00011 3.7E-09 61.6 12.7 170 14-192 73-279 (355)
87 3opb_A SWI5-dependent HO expre 98.0 4.4E-05 1.5E-09 69.7 10.7 183 11-194 500-730 (778)
88 2x19_B Importin-13; nuclear tr 98.0 0.0006 2E-08 63.7 18.7 175 19-195 459-652 (963)
89 3oc3_A Helicase MOT1, MOT1; re 97.9 0.00048 1.6E-08 60.7 16.2 150 49-208 175-340 (800)
90 3ibv_A Exportin-T; karyopherin 97.9 2.5E-05 8.6E-10 73.7 8.0 145 62-208 413-581 (980)
91 3l6x_A Catenin delta-1; cateni 97.7 0.00051 1.7E-08 61.2 13.0 143 50-192 310-476 (584)
92 3m1i_C Exportin-1; heat repeat 97.7 0.00044 1.5E-08 65.5 12.8 172 24-196 428-622 (1049)
93 3b2a_A TON_1937, putative unch 97.5 0.0057 2E-07 48.0 15.0 170 10-195 8-182 (265)
94 2db0_A 253AA long hypothetical 97.5 0.003 1E-07 48.0 12.9 174 11-192 71-246 (253)
95 3l6x_A Catenin delta-1; cateni 97.5 0.00081 2.8E-08 59.9 11.4 150 41-192 41-221 (584)
96 3u0r_A Apoptosis inhibitor 5; 97.5 0.0014 4.7E-08 56.5 12.0 190 11-209 67-316 (507)
97 4hat_C Exportin-1; heat repeat 97.4 0.001 3.4E-08 63.1 11.8 170 31-201 435-627 (1023)
98 4hat_C Exportin-1; heat repeat 97.4 0.00033 1.1E-08 66.4 7.8 129 69-198 435-575 (1023)
99 4gmo_A Putative uncharacterize 97.4 0.00025 8.5E-09 64.4 6.4 146 46-193 33-215 (684)
100 3tt9_A Plakophilin-2; cell adh 97.3 0.0019 6.7E-08 50.8 10.4 143 50-192 10-180 (233)
101 3ibv_A Exportin-T; karyopherin 97.0 0.0097 3.3E-07 56.2 12.8 170 25-195 414-631 (980)
102 3tt9_A Plakophilin-2; cell adh 96.9 0.0075 2.6E-07 47.4 10.1 110 84-193 6-125 (233)
103 1vsy_5 Proteasome activator BL 96.9 0.0016 5.3E-08 61.5 6.8 121 86-207 760-888 (997)
104 1lsh_A Lipovitellin (LV-1N, LV 96.7 0.011 3.8E-07 56.2 11.4 175 11-197 393-581 (1056)
105 3u0r_A Apoptosis inhibitor 5; 96.7 0.19 6.6E-06 43.4 17.8 155 11-177 31-191 (507)
106 3gjx_A Exportin-1; transport, 96.6 0.0021 7.2E-08 61.1 5.8 136 62-198 454-601 (1073)
107 3grl_A General vesicular trans 96.4 0.046 1.6E-06 49.0 12.1 183 11-193 23-242 (651)
108 3gjx_A Exportin-1; transport, 96.3 0.056 1.9E-06 51.5 12.9 173 29-201 458-653 (1073)
109 1lsh_A Lipovitellin (LV-1N, LV 96.2 0.012 4.2E-07 55.9 8.2 171 11-188 358-539 (1056)
110 3grl_A General vesicular trans 96.2 0.083 2.8E-06 47.3 12.9 150 43-193 16-196 (651)
111 3o2t_A Symplekin; heat repeat, 96.1 0.15 5.1E-06 43.0 13.5 152 11-195 27-186 (386)
112 3gs3_A Symplekin, LD45768P; he 96.1 0.41 1.4E-05 38.0 15.7 157 11-194 17-175 (257)
113 4gmo_A Putative uncharacterize 95.9 0.019 6.5E-07 52.0 7.9 73 124-197 34-110 (684)
114 3gs3_A Symplekin, LD45768P; he 95.7 0.15 5.2E-06 40.5 11.3 103 87-192 17-119 (257)
115 1vsy_5 Proteasome activator BL 95.7 0.0041 1.4E-07 58.7 2.3 152 45-199 798-973 (997)
116 3jxy_A Alkylpurine DNA glycosy 95.5 0.15 5.3E-06 39.7 10.5 138 51-203 64-205 (232)
117 3a6p_A Exportin-5; exportin-5, 95.1 0.28 9.7E-06 47.2 13.1 172 19-194 57-278 (1204)
118 3o2t_A Symplekin; heat repeat, 95.0 0.14 4.9E-06 43.0 9.5 105 84-191 24-128 (386)
119 4atg_A TAF6; transcription, TF 94.5 0.45 1.5E-05 36.2 10.2 136 63-209 24-175 (196)
120 2b6c_A Hypothetical protein EF 94.4 0.94 3.2E-05 34.8 12.2 138 51-203 58-198 (220)
121 3a6p_A Exportin-5; exportin-5, 94.4 0.94 3.2E-05 43.6 14.6 143 49-196 534-701 (1204)
122 2b6c_A Hypothetical protein EF 94.0 1.3 4.3E-05 34.1 12.2 157 11-187 57-215 (220)
123 3jxy_A Alkylpurine DNA glycosy 92.4 1.9 6.5E-05 33.3 11.0 157 13-189 65-224 (232)
124 3ldz_A STAM-1, signal transduc 87.6 5.2 0.00018 28.4 9.1 85 125-209 42-131 (140)
125 1x5b_A Signal transducing adap 87.6 6.6 0.00023 28.6 10.0 72 126-197 53-130 (163)
126 1t06_A Hypothetical protein; s 86.3 4.4 0.00015 31.4 8.8 73 126-199 109-186 (235)
127 1elk_A Target of MYB1; superhe 85.0 8.8 0.0003 27.7 9.3 68 130-197 59-135 (157)
128 3ldz_A STAM-1, signal transduc 81.8 3.7 0.00013 29.1 6.0 111 8-120 3-119 (140)
129 1x5b_A Signal transducing adap 81.1 6.2 0.00021 28.8 7.2 111 8-120 13-130 (163)
130 2fv2_A RCD1 required for cell 78.8 21 0.0007 28.3 9.7 69 83-151 98-171 (268)
131 3g2s_A C-terminal fragment of 78.8 11 0.00039 27.0 7.8 114 5-120 6-131 (149)
132 1upk_A MO25 protein; transfera 78.6 26 0.0009 28.7 12.0 103 91-193 169-284 (341)
133 3zyq_A Hepatocyte growth facto 77.5 7.4 0.00025 29.9 6.9 111 8-120 6-123 (226)
134 3ut4_A CTHE_2751, putative unc 68.9 27 0.00094 24.5 7.7 92 84-189 29-127 (134)
135 3zyq_A Hepatocyte growth facto 63.9 24 0.00081 27.0 7.0 85 125-209 45-135 (226)
136 4atg_A TAF6; transcription, TF 58.0 31 0.0011 25.9 6.5 146 14-173 16-178 (196)
137 3ut4_A CTHE_2751, putative unc 55.8 50 0.0017 23.2 7.9 29 124-152 30-58 (134)
138 1juq_A ADP-ribosylation factor 51.8 66 0.0023 23.4 9.3 73 125-197 50-133 (171)
139 2fv2_A RCD1 required for cell 50.9 89 0.0031 24.6 10.2 92 23-115 69-174 (268)
140 1ho8_A Vacuolar ATP synthase s 50.8 21 0.00073 30.7 5.1 56 59-114 417-475 (480)
141 1dvp_A HRS, hepatocyte growth 50.5 26 0.00088 26.6 5.1 30 11-40 44-73 (220)
142 1sz9_A PCF11 protein; RNA poly 48.3 28 0.00097 24.6 4.7 68 10-80 8-76 (144)
143 1juq_A ADP-ribosylation factor 47.5 78 0.0027 23.0 9.9 112 7-120 10-133 (171)
144 3g2s_A C-terminal fragment of 47.4 73 0.0025 22.6 10.2 74 124-197 47-131 (149)
145 1mhq_A ADP-ribosylation factor 46.6 75 0.0026 22.5 10.4 72 126-197 39-121 (148)
146 1dvp_A HRS, hepatocyte growth 46.4 39 0.0013 25.5 5.6 67 130-196 47-119 (220)
147 1sz9_A PCF11 protein; RNA poly 45.4 69 0.0024 22.5 6.4 68 126-193 44-115 (144)
148 2jtt_C Calcyclin-binding prote 44.8 14 0.00047 19.6 1.9 25 164-188 8-32 (35)
149 1t06_A Hypothetical protein; s 43.9 1E+02 0.0036 23.4 12.2 127 12-155 51-181 (235)
150 1elk_A Target of MYB1; superhe 42.6 89 0.0031 22.2 9.9 107 10-118 16-133 (157)
151 3rru_A TOM1L1 protein; structu 42.3 81 0.0028 22.4 6.4 81 130-210 59-148 (152)
152 4f52_E Glomulin; cullin-ring E 39.9 2E+02 0.0067 25.4 10.9 105 88-194 319-433 (596)
153 1ho8_A Vacuolar ATP synthase s 37.4 41 0.0014 29.0 4.7 53 140-192 420-476 (480)
154 2qzg_A Conserved uncharacteriz 28.1 1.3E+02 0.0044 19.7 9.5 74 115-188 8-87 (94)
155 3rru_A TOM1L1 protein; structu 26.2 1.8E+02 0.006 20.6 7.1 18 101-118 116-133 (152)
156 1vdy_A Hypothetical protein (R 24.3 1.9E+02 0.0064 20.3 6.3 17 124-140 48-64 (140)
157 3fga_B Serine/threonine-protei 24.1 3.2E+02 0.011 22.9 16.1 87 106-192 271-366 (403)
158 1vdy_A Hypothetical protein (R 23.9 1.2E+02 0.0042 21.3 4.6 70 84-154 47-130 (140)
159 2x6h_A GH13170P, VPS34, phosph 23.2 1.2E+02 0.0041 27.4 5.4 34 99-136 122-155 (696)
160 3ls8_A Phosphatidylinositol 3- 22.9 2.8E+02 0.0094 24.7 7.6 74 49-134 64-139 (614)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.95 E-value=1.1e-26 Score=205.56 Aligned_cols=207 Identities=59% Similarity=0.947 Sum_probs=195.3
Q ss_pred CCCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCCChHHHHHHHHHHHhccccccCcccc
Q 039154 4 VDEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEH 83 (211)
Q Consensus 4 ~~~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~ 83 (211)
-|+++.|+..+++.|+|+|+.+|..|++.+..++..+|++.+.++++|++.++.|++++||..+++.|+.+.+.+|+...
T Consensus 5 ~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~ 84 (588)
T 1b3u_A 5 GDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEY 84 (588)
T ss_dssp TTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGG
T ss_pred cCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHHH
Confidence 37899999999999999999999999999999999999999999999999985588999999999999999999998888
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE 163 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~ 163 (211)
...++|.+..+..|++..||..|++++.++++.++++...+.++|.+.+++++++|.+|..++..++.+++.++...++.
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~ 164 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE 164 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999878889
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154 164 LRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDL 210 (211)
Q Consensus 164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L 210 (211)
++|.+.++++|+++.||.+++..++.++..+|++.....++|.+..+
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 211 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNL 211 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887778899988654
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.90 E-value=1.4e-23 Score=185.47 Aligned_cols=191 Identities=20% Similarity=0.256 Sum_probs=163.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccc
Q 039154 19 KNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV 97 (211)
Q Consensus 19 ~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d 97 (211)
+++++..|..++..++.++..+|. ..+..++|.+.+ +.|++++||.++++.|+.+++.+|++.....++|.+..+++|
T Consensus 136 ~~~~~~~R~~a~~~l~~~~~~~~~-~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d 214 (588)
T 1b3u_A 136 GGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD 214 (588)
T ss_dssp TCSSHHHHHHHGGGHHHHTTTSCH-HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTC
T ss_pred cCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcC
Confidence 444455555555555555444442 345677787778 789999999999999999999988877778899999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCC
Q 039154 98 EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDM 176 (211)
Q Consensus 98 ~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~ 176 (211)
+++.||..|+.++..+++.++.+...+.++|.+.++.+|++|+||.+++..++.++...|.+ +...++|.|.++++|++
T Consensus 215 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 294 (588)
T 1b3u_A 215 EQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294 (588)
T ss_dssp SCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSS
T ss_pred CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCc
Confidence 99999999999999999999999888999999999999999999999999999999988877 56789999999999999
Q ss_pred HHHHHHHHHhhHHHHhhhCch----hhHHHHHHHHHhh
Q 039154 177 PMVRRSAASNLRKFAATVEPA----HLKTDIMSIFEDL 210 (211)
Q Consensus 177 ~~VR~aaa~~l~~~~~~~~~~----~~~~~llp~~~~L 210 (211)
+.||.+++.+++.++..++++ .....++|.+..+
T Consensus 295 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~ 332 (588)
T 1b3u_A 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 332 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999987 4567788877543
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.75 E-value=6.9e-17 Score=128.86 Aligned_cols=183 Identities=13% Similarity=0.081 Sum_probs=155.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCC--cchhhchhhhhhh-cC-CChHHHHHHHHHHHhccccccCcc--ccccc
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALGE--ERTPKELIPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGGV--EHAHV 86 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~--~~~~~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~~--~~~~~ 86 (211)
.+.+.+.|.+...|..++..|..+....+. ...-..+++.+.. +. |.+..||..++..++.++..+|.. .+...
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 477788999999999999999999876332 1223577888888 74 999999999999999999987753 34456
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh-----HHH
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-----ILK 161 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~-----~~~ 161 (211)
++|.+...+.|.+..||.+|..++..+++..+. +.++|.+....++.+|.+|..++..++.+....++ .+.
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 889999999999999999999999999998764 45778888888899999999999999997665542 366
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh
Q 039154 162 TELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL 199 (211)
Q Consensus 162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~ 199 (211)
..++|.+..+++|+.+.||.+|...++.++..+|.+.+
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~ 212 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV 212 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence 79999999999999999999999999999999997644
No 4
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.66 E-value=3.1e-15 Score=128.24 Aligned_cols=186 Identities=18% Similarity=0.132 Sum_probs=149.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhh-chhhhhhh-cCCChHHHHHHHHHHHhcccccc--------
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPK-ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYV-------- 78 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~-~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~i-------- 78 (211)
+..+.+.+.+++..+|..+++.+..++...+.. ..-. .++|++.. +.|.+++||..+.+.|..+++..
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 298 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 298 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444556678899999999999999999876542 1223 77888777 88999999999999888887642
Q ss_pred ----------Cc-cc----cccccchHHhhhcc-------chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcC
Q 039154 79 ----------GG-VE----HAHVLLPPLETLCT-------VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAG 136 (211)
Q Consensus 79 ----------g~-~~----~~~~llp~l~~l~~-------d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d 136 (211)
.. .. ....++|.+...+. |+++.+|..|..+|..++..++ +.+...++|.+....+|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~ 377 (462)
T 1ibr_B 299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKN 377 (462)
T ss_dssp CTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTC
T ss_pred cccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcC
Confidence 00 00 12456666654443 3357899999999999999999 56678899999999999
Q ss_pred CCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 137 EWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 137 ~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
+.|++|.+++..++.++...+.+ ....++|.++.+++|+.+.||.+|+..++.++..++++
T Consensus 378 ~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999876632 34679999999999999999999999999999999874
No 5
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.62 E-value=3.7e-14 Score=110.26 Aligned_cols=153 Identities=21% Similarity=0.203 Sum_probs=125.6
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccc
Q 039154 8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (211)
Q Consensus 8 ~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ 86 (211)
..-+..+++.|+++++.+|..|+..|..+ |. ...+|.+.+ +.|+++.||..++..|+.+.. ..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~----~~----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~ 81 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKI----GD----ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 81 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC----ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 34488999999999999999999999875 33 355777777 889999999999999998642 24
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHH
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS 166 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~ 166 (211)
.+|.+..+++|+++.||..|+.+|..++. ...+|.+.++.+|+++.||..++..++.+... ..++
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~ 146 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-------RAVE 146 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------GGHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-------HHHH
Confidence 56778888899999999999999998864 24567788888999999999999999888432 4577
Q ss_pred HHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154 167 IYTQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 167 ~~~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
.+..+++|+++.||.+++..|+.+.
T Consensus 147 ~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 147 PLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 7888889999999999999998774
No 6
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.61 E-value=5.8e-14 Score=108.32 Aligned_cols=163 Identities=20% Similarity=0.203 Sum_probs=130.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
....+++.|+++|+.+|..|+..|..+ |. ...+|.+.+ +.|+++.||..++..|+.+.. + ..+
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~----~~----~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----~----~~~ 78 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKI----GD----ERAVEPLIKALKDEDAWVRRAAADALGQIGD----E----RAV 78 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHH----CC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GGH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhc----CC----hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----H----HHH
Confidence 378899999999999999999999865 33 245677777 889999999999999998642 2 356
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~ 168 (211)
|.+..+++|+++.||..|+.+|..+.. ...+|.+.++.+|+++.||..++..++.+.. ...++.+
T Consensus 79 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L 143 (201)
T 3ltj_A 79 EPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ERAVEPL 143 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------GGGHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HHHHHHH
Confidence 778888899999999999999998864 2466777788899999999999999998853 2467788
Q ss_pred HHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154 169 TQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF 207 (211)
Q Consensus 169 ~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~ 207 (211)
..+++|+++.||.+++..|+.+ |.+.....|..++
T Consensus 144 ~~~l~d~~~~vr~~A~~aL~~~----~~~~~~~~L~~~l 178 (201)
T 3ltj_A 144 IKALKDEDGWVRQSAADALGEI----GGERVRAAMEKLA 178 (201)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHh----CchhHHHHHHHHH
Confidence 8999999999999999999887 4344444444443
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.61 E-value=8.3e-15 Score=135.76 Aligned_cols=196 Identities=18% Similarity=0.175 Sum_probs=154.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc----ccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG----VEH 83 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~----~~~ 83 (211)
+..+...+.++++.+|..+++.+..++...+.. ..-..+++++.+ +.|++++||..+++.|..+++.-.. ...
T Consensus 217 l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~ 296 (852)
T 4fdd_A 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRH 296 (852)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 556677788999999999999999998765421 112357788888 7899999999999999988763211 123
Q ss_pred ccccchHHhhhc-----------cc-----------hhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchH
Q 039154 84 AHVLLPPLETLC-----------TV-----------EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTA 141 (211)
Q Consensus 84 ~~~llp~l~~l~-----------~d-----------~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~v 141 (211)
...++|.+...+ .| .++.||..|+.++..++..++ +.+...++|.+..+.+|+.|++
T Consensus 297 ~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~ 375 (852)
T 4fdd_A 297 LPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVV 375 (852)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHH
Confidence 345667765554 34 345789999999999999987 4566789999999999999999
Q ss_pred HHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch---hhHHHHHHHH
Q 039154 142 RVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA---HLKTDIMSIF 207 (211)
Q Consensus 142 R~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~---~~~~~llp~~ 207 (211)
|.+++..++.++...+.. +...++|.+.++++|+.+.||.+++..++.++..++++ .....++|.+
T Consensus 376 R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L 447 (852)
T 4fdd_A 376 KESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL 447 (852)
T ss_dssp HHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 999999999999988764 56889999999999999999999999999999987643 3344555544
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.6e-14 Score=114.91 Aligned_cols=187 Identities=10% Similarity=0.113 Sum_probs=151.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-HHHHhCC----cchhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccC-cc---
Q 039154 13 VLTDELKNDDIQLRLNSIRRLST-IARALGE----ERTPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVG-GV--- 81 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~-ia~~lg~----~~~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig-~~--- 81 (211)
.+-+.++|.+...|.+|+..|.. +...... ..--.+++..+.+ + .|.+..||..++..++.+++.++ +.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 56778899999999999999888 7532111 1111466777777 6 79999999999999999999887 32
Q ss_pred ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH---HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154 82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL---VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (211)
Q Consensus 82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~---~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~ 158 (211)
.+...++|.+...++|....||.++..++..+++..++... -+.+++.+....++++|.+|..++..+..++...+.
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 23355788888888999999999999999999999865322 235777777777888999999999999999887773
Q ss_pred ---H---HH-HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh
Q 039154 159 ---I---LK-TELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL 199 (211)
Q Consensus 159 ---~---~~-~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~ 199 (211)
. +. +.++|.+.+++.|+.+.||.+|...++.+...+|.+.+
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~ 227 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF 227 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 2 45 78999999999999999999999999999999998654
No 9
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.57 E-value=7.1e-14 Score=108.62 Aligned_cols=157 Identities=20% Similarity=0.166 Sum_probs=127.9
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154 9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
..+..+++.++++++.+|..++..|..+ |. ...+|.+.+ +.|+++.||..++..|+.+.. + ..
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----~----~~ 113 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQI----GD----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----E----RA 113 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHH----CC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GG
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhh----CC----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H----HH
Confidence 3477889999999999999999999876 33 345777778 899999999999999998643 2 35
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHH
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI 167 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~ 167 (211)
+|.|..+++|+++.||..|+.+|..+.. ...+|.+.++.+|+++.||..++..++.+.. ....+.
T Consensus 114 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~ 178 (211)
T 3ltm_A 114 VEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAA 178 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHH
Confidence 6788888999999999999999999864 2467788888899999999999999998843 367888
Q ss_pred HHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 168 YTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 168 ~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
+..+++|+++.||.+|+..|..+....+.
T Consensus 179 L~~~l~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 179 MEKLAETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence 88999999999999999999988776543
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.55 E-value=4.2e-14 Score=131.03 Aligned_cols=184 Identities=17% Similarity=0.132 Sum_probs=149.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHH------hCCcchhhchhhhhhh-c-----------CC-----------ChH
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARA------LGEERTPKELIPFLSA-N-----------ND-----------DDD 61 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~------lg~~~~~~~L~p~l~~-~-----------~D-----------~~~ 61 (211)
+..+++.+++++..+|..|+.-+..++.. +.+ .-..++|.+.+ + .| +++
T Consensus 258 ~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~--~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 258 VEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVR--HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTT--THHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHH--HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 45566778899999999999888877632 111 22366777765 4 33 233
Q ss_pred HHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh--HHHHhhHHHHHHhhcCCCc
Q 039154 62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES--DLVDWFIPLVKRLAAGEWF 139 (211)
Q Consensus 62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~~~~l~p~i~~l~~d~~~ 139 (211)
.||++++..|+.++...| +.....++|.+..+++++++.+|++|+.+++.+++..+.. .....++|.+..+.+|+++
T Consensus 336 ~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~ 414 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA 414 (852)
T ss_dssp CHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCH
Confidence 589999999999999876 5666788999999999999999999999999999877642 2346688999999999999
Q ss_pred hHHHhHHhHHHhhccCCCh----HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 140 TARVSACGLFHIAYPSAPD----ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 140 ~vR~~~a~~l~~l~~~~~~----~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
.||..++..++.++..++. .+...+++.+++.++|+++.||.+|+..++.++...+++
T Consensus 415 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 9999999999998876543 267789999999999999999999999999999988864
No 11
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.55 E-value=1e-13 Score=112.22 Aligned_cols=130 Identities=14% Similarity=0.030 Sum_probs=87.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
.++.+++.|+++|+.+|..|+..|..+. . ...+|.+.+ +.|+++.||..++..|+.+.. .......++
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~----~----~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~---~~~~~~~l~ 92 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG----G----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVF 92 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC----C----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC---CTTTHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC----C----chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---ccccchHHH
Confidence 4778889999999999999999988763 2 346777777 888899999999999988653 122233455
Q ss_pred hHHh-hhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhh
Q 039154 89 PPLE-TLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIA 152 (211)
Q Consensus 89 p~l~-~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l 152 (211)
+.+. .+.+|+++.||..|+.+|..++...+. ....++|.+..+.+|+++.||..++..++.+
T Consensus 93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 93 NILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 6665 356788888999999988888743211 1123444444445555555555555555443
No 12
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.54 E-value=1.6e-13 Score=105.89 Aligned_cols=152 Identities=21% Similarity=0.190 Sum_probs=127.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
.+..+++.++++++.+|..++..|..+ |. ...+|.+.+ +.|+++.||..++..|+.+.. + ..+
T Consensus 46 ~~~~L~~~l~~~~~~vr~~a~~~L~~~----~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~----~~~ 109 (201)
T 3ltj_A 46 AVEPLIKALKDEDAWVRRAAADALGQI----GD----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----E----RAV 109 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G----GGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhh----CC----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H----HHH
Confidence 477888999999999999999999875 33 245777778 889999999999999998643 2 356
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~ 168 (211)
+.+..+++|+++.||..|+.+|..+.. ...+|.+.++.+|+++.||..++..++.+. . ....+.+
T Consensus 110 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----~---~~~~~~L 174 (201)
T 3ltj_A 110 EPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEIG----G---ERVRAAM 174 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----S---HHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----c---hhHHHHH
Confidence 778888899999999999999999864 356788888999999999999999999883 2 3678888
Q ss_pred HHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 169 TQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 169 ~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
..+++|+++.||.+|+..|+.+..
T Consensus 175 ~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 175 EKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHh
Confidence 889999999999999999987654
No 13
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.52 E-value=1.6e-13 Score=111.16 Aligned_cols=164 Identities=15% Similarity=0.057 Sum_probs=126.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh--cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
.+..+++.++|+++.+|..|+..|+.+. +.......++|.+.+ ..|+++.||..++..|+.+.... ......+
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~---~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~--~~~~~~~ 129 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIK---ICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN--PIYSPKI 129 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSC---CCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC--GGGHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhc---cccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC--CcccHHH
Confidence 3677888899999999999998887642 123344557777764 67889999999999999976421 1223457
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHH
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI 167 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~ 167 (211)
+|.+..+++|+++.||..|+.+|..++. ...+|.+..+.+|+.+.||..++..++.+... ....++.
T Consensus 130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~~~ 196 (280)
T 1oyz_A 130 VEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLLINLLKDPNGDVRNWAAFAININKYD-----NSDIRDC 196 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----CHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-----cHHHHHH
Confidence 7888888999999999999999987764 23677788888999999999999999887422 1357788
Q ss_pred HHHhcCCCCHHHHHHHHHhhHHHH
Q 039154 168 YTQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 168 ~~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
+..+++|+++.||..++..|+.+.
T Consensus 197 L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 197 FVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhC
Confidence 889999999999999999998765
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.52 E-value=5.7e-13 Score=122.54 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=155.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc------
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG------ 80 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~------ 80 (211)
+..+.+.+.+++..+|..+++.+..++...+..- ..+.+++++.. +.|.++.||..+.+.|..+++....
T Consensus 226 l~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 305 (861)
T 2bpt_A 226 MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4455666788999999999999999998876432 11267777777 8899999999999999888775310
Q ss_pred -------------cccccccchHHhhhccc-------hhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCch
Q 039154 81 -------------VEHAHVLLPPLETLCTV-------EETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFT 140 (211)
Q Consensus 81 -------------~~~~~~llp~l~~l~~d-------~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~ 140 (211)
......++|.+...+.+ +++.+|..|...+..++..++ +.....++|.+.+..+++.|+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~ 384 (861)
T 2bpt_A 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWR 384 (861)
T ss_dssp HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHH
T ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChh
Confidence 11224567776555542 357899999999999999988 455667889999999999999
Q ss_pred HHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc----hhhHHHHHHHHH
Q 039154 141 ARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP----AHLKTDIMSIFE 208 (211)
Q Consensus 141 vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~----~~~~~~llp~~~ 208 (211)
+|.+++..++.++...+.+ +...++|.+.+.++|+.+.||.+++..++.++..+++ ......++|.+.
T Consensus 385 ~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~ 460 (861)
T 2bpt_A 385 NREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACL 460 (861)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 9999999999999888733 4567899999999999999999999999999999875 335566777553
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.52 E-value=1.9e-13 Score=131.05 Aligned_cols=198 Identities=13% Similarity=0.163 Sum_probs=157.1
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC---Ccchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc
Q 039154 8 LYPIAVLTDELKNDDIQLRLNSIRRLSTIARALG---EERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH 83 (211)
Q Consensus 8 ~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg---~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~ 83 (211)
..-+..+++.+.|.|+..|..|...|....+.-. .+...+.++|.+.+ +.|++++||.+++..|+.+++.++. ..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ 83 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH
Confidence 3458899999999999999999888765432100 11345578888888 8899999999999999999987765 45
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh--------HHHHhhHHHHHHhhcC-CCchHHHhHHhHHHhhcc
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES--------DLVDWFIPLVKRLAAG-EWFTARVSACGLFHIAYP 154 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--------~~~~~l~p~i~~l~~d-~~~~vR~~~a~~l~~l~~ 154 (211)
...+++.+...+.|++..||.+|..++..++..++++ ...+.++|.+.+..+| ++|.+|..+...+..++.
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 6678888888888998999999999999999999876 2467899999888884 889999999999999986
Q ss_pred CCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154 155 SAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF 207 (211)
Q Consensus 155 ~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~ 207 (211)
..|.. +...+++.+...++|+++.||+.++..++.++...+.+.+ ..++|.+
T Consensus 164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~-~~~l~~l 218 (1230)
T 1u6g_C 164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVF-VDLIEHL 218 (1230)
T ss_dssp HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----C-TTHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHH
Confidence 65553 5688999999999999999999999999999998876542 3344433
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.51 E-value=6.4e-13 Score=122.45 Aligned_cols=196 Identities=17% Similarity=0.132 Sum_probs=152.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC-------
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG------- 79 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig------- 79 (211)
+..+.+.+.+++..+|..+++.+..++...+..- ....++|++.+ ..|++++||..+.+.|..+++...
T Consensus 219 l~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~ 298 (876)
T 1qgr_A 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 298 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhc
Confidence 4555666788899999999999999998766431 22367788877 788999999999998888776420
Q ss_pred -----------c-cc----cccccchHHhhhcc-------chhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcC
Q 039154 80 -----------G-VE----HAHVLLPPLETLCT-------VEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAG 136 (211)
Q Consensus 80 -----------~-~~----~~~~llp~l~~l~~-------d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d 136 (211)
. .. ....++|.+...+. |+++.+|.+|...+..+++.++. .+...++|.+....+|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~ 377 (876)
T 1qgr_A 299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKN 377 (876)
T ss_dssp HHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTC
T ss_pred cccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccC
Confidence 0 00 11345665544443 44689999999999999999884 4566888999999999
Q ss_pred CCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch----hhHHHHHHHH
Q 039154 137 EWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA----HLKTDIMSIF 207 (211)
Q Consensus 137 ~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~----~~~~~llp~~ 207 (211)
++|++|.+++..++.++...+++ +...++|.++.+++|+.+.||.+|+..++.++..+++. .....++|.+
T Consensus 378 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l 456 (876)
T 1qgr_A 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 456 (876)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHH
Confidence 99999999999999999988843 45778999999999999999999999999999998753 3344555544
No 17
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.49 E-value=1.2e-13 Score=132.43 Aligned_cols=197 Identities=16% Similarity=0.170 Sum_probs=155.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--------hhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccCc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER--------TPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGG 80 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--------~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~ 80 (211)
+..+++.+.++++.+|..++..+..++..+|++. ...+++|.+.+ +.| +++.+|..+...|..+++..|.
T Consensus 88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~ 167 (1230)
T 1u6g_C 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 167 (1230)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh
Confidence 5667788889999999999999999999999862 56789999998 774 7899999999999998875553
Q ss_pred c--ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154 81 V--EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (211)
Q Consensus 81 ~--~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~ 158 (211)
. .....+++.+...+.|++..||..|+.++..++...+.+.+...+-.++..+.++.++.+|..++..++.++...|.
T Consensus 168 ~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~ 247 (1230)
T 1u6g_C 168 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 247 (1230)
T ss_dssp SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH
Confidence 1 13456778888888899999999999999999998887654433334444555555678999999999999888876
Q ss_pred H---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh--hHHHHHHHH
Q 039154 159 I---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH--LKTDIMSIF 207 (211)
Q Consensus 159 ~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~--~~~~llp~~ 207 (211)
. +...++|.+.+.++|+++.||..++..++.++..++.+. ....++|.+
T Consensus 248 ~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~l 301 (1230)
T 1u6g_C 248 RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINIC 301 (1230)
T ss_dssp GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHH
Confidence 5 347899999999999999999999999999999988753 445666665
No 18
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.48 E-value=1.1e-12 Score=112.26 Aligned_cols=198 Identities=9% Similarity=0.084 Sum_probs=149.5
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhC----Ccchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc--
Q 039154 11 IAVLTDELKND--DIQLRLNSIRRLSTIARALG----EERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV-- 81 (211)
Q Consensus 11 l~~l~~~l~s~--~~~~R~~a~~~l~~ia~~lg----~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~-- 81 (211)
+..+...++++ ++.+|..|++.+..+...++ .......+++.+.+ ..+++++||..+++.|..++...+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~ 253 (462)
T 1ibr_B 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (462)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888 79999999999887654332 11123456888888 88899999999999999988755431
Q ss_pred cccc-ccchHHhhhccchhhHHHHHHHHHHHHHHhhc--------------------ChhHH---HHhhHHHHHHhhc--
Q 039154 82 EHAH-VLLPPLETLCTVEETCMRDKAVESLCRIGSQM--------------------RESDL---VDWFIPLVKRLAA-- 135 (211)
Q Consensus 82 ~~~~-~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l--------------------~~~~~---~~~l~p~i~~l~~-- 135 (211)
.+.. .+++.+...++|.++.||..|++.+..+++.. ....+ ...++|.+.+...
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~ 333 (462)
T 1ibr_B 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333 (462)
T ss_dssp TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhc
Confidence 2233 66777777778999999999999998888753 01111 2556777755442
Q ss_pred -----CCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh---hHHHHHHHH
Q 039154 136 -----GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH---LKTDIMSIF 207 (211)
Q Consensus 136 -----d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~---~~~~llp~~ 207 (211)
|+.|.+|.+++..+..++..+|+.....++|.+...++|+.|.+|.+++..++.++...+++. ....++|.+
T Consensus 334 d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l 413 (462)
T 1ibr_B 334 DENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL 413 (462)
T ss_dssp CSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 457999999999999999999966778899999999999999999999999999998665332 224566765
Q ss_pred H
Q 039154 208 E 208 (211)
Q Consensus 208 ~ 208 (211)
.
T Consensus 414 ~ 414 (462)
T 1ibr_B 414 I 414 (462)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.47 E-value=1.2e-12 Score=120.33 Aligned_cols=183 Identities=16% Similarity=0.109 Sum_probs=148.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC----------------Cc---chhhchhhhhhh-cC-------CChHHH
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALG----------------EE---RTPKELIPFLSA-NN-------DDDDEV 63 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg----------------~~---~~~~~L~p~l~~-~~-------D~~~~V 63 (211)
+..+...+++.+..+|..++.-+..++.... +. ..-..++|.+.+ +. |+++.|
T Consensus 268 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~ 347 (861)
T 2bpt_A 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNV 347 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcH
Confidence 3445667889999999999999988887642 11 112567777766 44 245689
Q ss_pred HHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCCCch
Q 039154 64 LLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGEWFT 140 (211)
Q Consensus 64 R~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~~~~ 140 (211)
|++++..|+.++..+| +.....++|.+...+++.++.+|++|+.+++.+++..+++.+. ..++|.+.+..+|+++.
T Consensus 348 r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~ 426 (861)
T 2bpt_A 348 SMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ 426 (861)
T ss_dssp HHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 9999999999999887 4556778899999999999999999999999999887754443 45788888889999999
Q ss_pred HHHhHHhHHHhhccCCCh-----HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 141 ARVSACGLFHIAYPSAPD-----ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 141 vR~~~a~~l~~l~~~~~~-----~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
||.+++..++.++..++. ++...++|.+++.++|+ +.||.+++..+..+++.++
T Consensus 427 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~ 485 (861)
T 2bpt_A 427 VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLA 485 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcc
Confidence 999999999988776543 36788999999999998 9999999999999999887
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.45 E-value=2.1e-12 Score=102.57 Aligned_cols=186 Identities=17% Similarity=0.129 Sum_probs=147.2
Q ss_pred CCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc
Q 039154 6 EPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG 80 (211)
Q Consensus 6 ~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~ 80 (211)
+.-.+...+.+.|+|+|+++|..|+..|..+... ..+ -.....+|.+.+ +.+++++||..++..|++++..-..
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 3445688999999999999999999999765544 221 133456788888 8888899999999999998862110
Q ss_pred ---cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154 81 ---VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (211)
Q Consensus 81 ---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~ 154 (211)
.-...-.+|.+..+++++++.||..|+.+|..++..-+.. ....-.+|.+.++.+++++.+|..++..+..++.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 1112336889999999999999999999999998765433 2344588999999999999999999999999987
Q ss_pred CCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 155 SAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 155 ~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
.-... .....+|.++++++++++.||..++..|++++.
T Consensus 168 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 168 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 54332 234578999999999999999999999999984
No 21
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.45 E-value=2.6e-12 Score=118.35 Aligned_cols=183 Identities=18% Similarity=0.118 Sum_probs=148.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC------------------C--cc---hhhchhhhhhh-cC-------CC
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALG------------------E--ER---TPKELIPFLSA-NN-------DD 59 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg------------------~--~~---~~~~L~p~l~~-~~-------D~ 59 (211)
+..+...+++++..+|..++.-+..++.... + .. .-+.++|.+.+ +. |+
T Consensus 261 ~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~ 340 (876)
T 1qgr_A 261 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD 340 (876)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTT
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccc
Confidence 4556667788999999999988888876430 0 11 11456776665 42 45
Q ss_pred hHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH---HHhhHHHHHHhhcC
Q 039154 60 DDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL---VDWFIPLVKRLAAG 136 (211)
Q Consensus 60 ~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~---~~~l~p~i~~l~~d 136 (211)
++.+|++++..++.++...| +.....++|.+...++|.++.+|.+|+.+++.+++..+++.+ ...++|.+....+|
T Consensus 341 ~~~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d 419 (876)
T 1qgr_A 341 DWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHCc-HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 67899999999999999887 455667888888999999999999999999999998885533 35588988888999
Q ss_pred CCchHHHhHHhHHHhhccCCCh-----HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 137 EWFTARVSACGLFHIAYPSAPD-----ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 137 ~~~~vR~~~a~~l~~l~~~~~~-----~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
+.+.||..++..++.++...+. ++...+++.+++.++|+ +.||..++..+..++..++
T Consensus 420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999887654 36788999999999996 9999999999999998875
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.42 E-value=6.4e-12 Score=99.15 Aligned_cols=182 Identities=16% Similarity=0.099 Sum_probs=145.2
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-
Q 039154 9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH- 83 (211)
Q Consensus 9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~- 83 (211)
..+..+++.|+++++.+|..|+..|..++..-+.. -.....+|.+.+ +.+++++||..++..|++++.. .+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC--ChHHH
Confidence 35788999999999999999999999887432211 123356788888 8888999999999999998863 1111
Q ss_pred ----ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154 84 ----AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (211)
Q Consensus 84 ----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~ 156 (211)
....+|.+..+++++++.+|..|+..|..++..-+. .....-.+|.+.++..++.+.+|..++..+..++..-
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 234688899999999999999999999999964322 1233457899999999999999999999999998764
Q ss_pred ChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 157 PDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 157 ~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
... .....++.+.++++++++.||..++..|.+++.
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 332 234588999999999999999999999999986
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=7.2e-12 Score=99.61 Aligned_cols=167 Identities=10% Similarity=0.034 Sum_probs=134.7
Q ss_pred hCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--cccccccchHHhhhcc-chhhHHHHHHHHHHHHHHh
Q 039154 40 LGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCT-VEETCMRDKAVESLCRIGS 115 (211)
Q Consensus 40 lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~~~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~ 115 (211)
+.+.+.-..+-|-+.+ ..|.++.+|++++..|..+++..+. ......+++.+..++. |.+..||..|+.++..++.
T Consensus 7 ~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~ 86 (242)
T 2qk2_A 7 LDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAK 86 (242)
T ss_dssp TSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred CCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4455555666666777 8899999999999999998874222 1223567888888884 9999999999999999999
Q ss_pred hcChh--HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 116 QMRES--DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 116 ~l~~~--~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
.+++. .....++|.+.....|+...||.+++..+..++...+- +.++|.+...++|..|.||..++..++.++..
T Consensus 87 ~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 87 GLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---EAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 98775 34466899999999999999999999999999887763 57889999999999999999999999999888
Q ss_pred hCchh----hHHHHHHHHHh
Q 039154 194 VEPAH----LKTDIMSIFED 209 (211)
Q Consensus 194 ~~~~~----~~~~llp~~~~ 209 (211)
++++. ....++|.+..
T Consensus 164 ~~~~~~~~~~l~~l~p~l~~ 183 (242)
T 2qk2_A 164 TQPTALNKKLLKLLTTSLVK 183 (242)
T ss_dssp CCGGGCCHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHH
Confidence 87652 23456666543
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.41 E-value=4e-12 Score=98.31 Aligned_cols=181 Identities=17% Similarity=0.132 Sum_probs=142.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-----hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-----TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--- 80 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-----~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--- 80 (211)
+...+...|+|+|+.+|..|+..|..++. +.+. .....+|.+.+ +.+++++||..++..|++++..-..
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 45677788899999999999999998863 2222 22356788888 8899999999999999998742110
Q ss_pred cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154 81 VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (211)
Q Consensus 81 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~ 157 (211)
.-...-.+|.+..++++++..||..|+.+|..++..-+.. ....-.+|.+.++.++++..+|..++..+..++..-.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 1112347899999999999999999999999998743221 2234578999999999999999999999999987533
Q ss_pred hH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 158 DI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 158 ~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
.. .....++.+.++++++++.||+.|+..|..++.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 22 234578999999999999999999999988764
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.39 E-value=9.6e-12 Score=106.30 Aligned_cols=199 Identities=13% Similarity=0.042 Sum_probs=153.5
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---cc
Q 039154 11 IAVLTDELKN-DDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VE 82 (211)
Q Consensus 11 l~~l~~~l~s-~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~ 82 (211)
+..++..+++ .+..+|..++..+..++..-++. .....++|.+.+ +.++++.||..++..|.+++..-.. ..
T Consensus 151 i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 230 (450)
T 2jdq_A 151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV 230 (450)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 6677788885 68999999999999998544222 233678898888 8889999999999999998863211 11
Q ss_pred cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154 83 HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (211)
Q Consensus 83 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~ 159 (211)
....++|.+..++.++++.||..|+.+|..++...+.. .....++|.+.++.+++++.+|..++..++.++......
T Consensus 231 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~ 310 (450)
T 2jdq_A 231 IDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQ 310 (450)
T ss_dssp HHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 12357888989999999999999999999998764332 123358899999999999999999999999998754332
Q ss_pred ----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhH----HHHHHHHHh
Q 039154 160 ----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLK----TDIMSIFED 209 (211)
Q Consensus 160 ----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~----~~llp~~~~ 209 (211)
....++|.++.+++|+++.||+.++..|++++...+++... ..++|.+.+
T Consensus 311 ~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ 368 (450)
T 2jdq_A 311 IQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD 368 (450)
T ss_dssp HHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence 22478899999999999999999999999998865554322 335555544
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.37 E-value=1.7e-11 Score=104.73 Aligned_cols=183 Identities=11% Similarity=0.010 Sum_probs=145.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccCc---c
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGG---V 81 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~---~ 81 (211)
-+..+++.++++++.+|..|+..|..++..-... ......+|.+.+ +.+ .++.||..++..|++++..-++ .
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 187 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH
Confidence 4778889999999999999999999987532110 122456788888 774 7899999999999999864321 2
Q ss_pred ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154 82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (211)
Q Consensus 82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~ 158 (211)
.....++|.+..++++++..+|..++.+|..++...+. ......++|.+.++..++.+.+|..++..++.++...+.
T Consensus 188 ~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 267 (450)
T 2jdq_A 188 AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267 (450)
T ss_dssp GGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH
Confidence 23366889999999999999999999999999875422 122345788888899999999999999999999876543
Q ss_pred H----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 159 I----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 159 ~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
. ....+++.+.++++++++.||+.++..|++++.
T Consensus 268 ~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305 (450)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 3 123588999999999999999999999999985
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.37 E-value=1.1e-11 Score=97.68 Aligned_cols=186 Identities=15% Similarity=0.085 Sum_probs=146.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-----hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-----TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--- 80 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-----~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--- 80 (211)
-+..+++.|++++..+|..++..|..++.. .+. .....+|.+.+ +.+++++||..++..|++++..-..
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASG--PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcC--ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 377888999999999999999999888632 122 22356788888 8899999999999999999852110
Q ss_pred cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154 81 VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (211)
Q Consensus 81 ~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~ 157 (211)
.-.....+|.+..+++++++.+|..|+.+|..++..-+. .....-.+|.+.++..++...+|..++..+..++..-.
T Consensus 123 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 202 (252)
T 4hxt_A 123 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT 202 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 111234688899999999999999999999999875332 12334588999999999999999999999999987422
Q ss_pred hH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 158 DI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 158 ~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
.. .....++.+.++++++++.||+.|+..|.++...-+.+
T Consensus 203 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 203 SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 21 23457899999999999999999999999999876543
No 28
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.34 E-value=4.2e-11 Score=107.12 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=144.5
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccccc
Q 039154 9 YPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 9 ~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
..++.+.++|+|.+...|..+++.+-- ...+|.+. ..+.+.+.+ +++++.++|+.+.-.+..+++. .++....+
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~-~~~~G~d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~ 87 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIA-AMTVGKDV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIMA 87 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHH-HHHTTCCC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHTT
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHH-HHHCCCCh--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHHH
Confidence 358999999999999999999888853 46789754 567777778 8899999999998888887662 23333445
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHH-HHHHHH
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-KTELRS 166 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-~~~l~~ 166 (211)
.+.+.+-++|+++.||..|+.+++.++ ..++...++|.+.++.+|+++.||+.++..+..++...+... ...+++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~ 163 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLD 163 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHH
Confidence 677888889999999999988887765 445667888999999999999999999999999988544333 247999
Q ss_pred HHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 167 IYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 167 ~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
.+.++++|+++.||.+|+..|++++..
T Consensus 164 ~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 164 SLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 999999999999999999999998775
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.34 E-value=7.5e-12 Score=99.30 Aligned_cols=181 Identities=16% Similarity=0.115 Sum_probs=141.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcch-----hhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc--
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERT-----PKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV-- 81 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~-----~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~-- 81 (211)
-+..+++.|+++++.+|..|+..|..++. +.+.. ....+|.+.+ +.+++++||..++..|++++..-...
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence 36778899999999999999999998863 22222 2336788888 88899999999999999987632211
Q ss_pred -ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154 82 -EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (211)
Q Consensus 82 -~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~ 157 (211)
-.....+|.+..+++++++.||..|+.+|..++..-+.. ....-.+|.+.++..++...+|..++..+..++..-.
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 212 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 212 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH
Confidence 122347899999999999999999999999998654221 2335578999999999999999999999999985433
Q ss_pred hH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 158 DI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 158 ~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
.. .....++.+.+++++.++.||+.|+..|.+++.
T Consensus 213 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 213 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 22 234588999999999999999999999987754
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.33 E-value=2.2e-11 Score=107.03 Aligned_cols=186 Identities=12% Similarity=0.064 Sum_probs=147.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc---chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---ccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE---RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEH 83 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~---~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~ 83 (211)
+..++..+++.+..+|..++..|..++..-++. .....++|.+.+ +.+++++||..++..|++++..-.. ...
T Consensus 217 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~ 296 (530)
T 1wa5_B 217 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296 (530)
T ss_dssp HHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 667788888899999999999999998543221 234577888888 8888999999999999998863111 111
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI- 159 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~- 159 (211)
...++|.+..++.+.++.||..|+.+|..++..-+. ..+..-++|.+..+..++.|.+|..++..++.++......
T Consensus 297 ~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 376 (530)
T 1wa5_B 297 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 376 (530)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 236789999999999999999999999999864332 1233468899999999999999999999999998753332
Q ss_pred ---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 160 ---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 160 ---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
....++|.++.++++.++.||+.|+..|++++...++
T Consensus 377 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~ 416 (530)
T 1wa5_B 377 QAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ 416 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 1245788999999999999999999999999987554
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.31 E-value=3.1e-11 Score=106.15 Aligned_cols=183 Identities=12% Similarity=0.042 Sum_probs=145.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cCCC-hHHHHHHHHHHHhccccccCc---c
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-NNDD-DDEVLLAMAEELGVFIPYVGG---V 81 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~D~-~~~VR~~~a~~L~~l~~~ig~---~ 81 (211)
+..+++.|+|+++.+|..|+..|..++..-+.. .....++|.+.+ +.++ ++.||..++..|++++..-.. .
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 788999999999999999999998875432222 133568899999 7776 899999999999998862110 1
Q ss_pred ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC--
Q 039154 82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA-- 156 (211)
Q Consensus 82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~-- 156 (211)
-.....+|.|..++++.+..||+.|+.+|..++..-+. .....-++|.+.++..+....+|..++..+..++..-
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence 11245689999999999999999999999999975322 2234467888999999999999999999999998654
Q ss_pred --ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 157 --PDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 157 --~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
.......++|.+..++.|+++.||..++..|..++..
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 2224567899999999999999999999999999864
No 32
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=99.28 E-value=4e-11 Score=94.34 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=120.7
Q ss_pred hhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhh-hccchhhHHHHHHHHHHHHHHhhcChhHHH
Q 039154 46 PKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLET-LCTVEETCMRDKAVESLCRIGSQMRESDLV 123 (211)
Q Consensus 46 ~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~-l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~ 123 (211)
.+++++++.. .+++.++||..++..|+.+ . ....+++.+.. +..|+.+.||+.+...+.+++...+++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 6788899999 8899999999999988876 3 23578999987 8899999999999999999998666653
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh-HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHH
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTD 202 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~-~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~ 202 (211)
.++.+..+++|++..||..++......+..... ...+.++|++..|..|++.-||++++..|.++++. .|+++...
T Consensus 140 --~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~-~Pd~V~~~ 216 (240)
T 3l9t_A 140 --ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK-FPDLVKIE 216 (240)
T ss_dssp --THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred --HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh-CHHHHHHH
Confidence 678899999999999999999887544432111 14578999999999999999999999999999885 66666554
Q ss_pred H
Q 039154 203 I 203 (211)
Q Consensus 203 l 203 (211)
+
T Consensus 217 ~ 217 (240)
T 3l9t_A 217 L 217 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 33
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.25 E-value=6.1e-11 Score=104.05 Aligned_cols=181 Identities=13% Similarity=0.104 Sum_probs=142.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc----hhhchhhhhhh-cCCCh-HHHHHHHHHHHhccccccCcccc-
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER----TPKELIPFLSA-NNDDD-DEVLLAMAEELGVFIPYVGGVEH- 83 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~----~~~~L~p~l~~-~~D~~-~~VR~~~a~~L~~l~~~ig~~~~- 83 (211)
+..+++.|+|+|+..|..|+..|..++..-+.+. ....++|.+.+ +.+++ +.||..++..|++++. +.++.
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~--~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS--GTSENT 153 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--SCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CCHHHH
Confidence 8889999999999999999999988865433121 34567898888 77765 9999999999999886 22221
Q ss_pred ----ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhh-cCCCchHHHhHHhHHHhhccC
Q 039154 84 ----AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLA-AGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 84 ----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~-~d~~~~vR~~~a~~l~~l~~~ 155 (211)
..-.+|.|..++.+++..||..|+.+|..++..-+. .....-.+|.+.++. ++..+.+|..++..+..++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 224688899999999999999999999999865322 122234566666666 778899999999999999876
Q ss_pred CChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 156 APDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 156 ~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
.+.. .....+|.+..+++++++.||..++..|..++..
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 4222 4567899999999999999999999999998853
No 34
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.25 E-value=8.2e-11 Score=105.19 Aligned_cols=177 Identities=16% Similarity=0.105 Sum_probs=109.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc-cccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA-HVLL 88 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~-~~ll 88 (211)
++.+.+.|+|+|+.+|..|++.++.+ +.......+.|.+.+ +.|.++.||+.|+..+..+.+ .+++... ..++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i----~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~ 162 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCI----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD-INAQMVEDQGFL 162 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTC----CSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH-SSCCCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh-hChhhcccccHH
Confidence 45666667777777777776665443 344444566666666 667777777777777777666 2222111 1356
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcChh----HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHH
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRES----DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 164 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~----~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l 164 (211)
|.+..+++|+++.||..|+.+|.++++.-+.. .....+-.++..+...+.| .+..+...+..+++. +.+....+
T Consensus 163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~-~q~~il~~l~~l~~~-~~~~~~~~ 240 (591)
T 2vgl_B 163 DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEW-GQIFILDCLSNYNPK-DDREAQSI 240 (591)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHH-HHHHHHHHHHTSCCC-SHHHHHHH
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCch-HHHHHHHHHHHhCCC-ChHHHHHH
Confidence 67777777777777777777777776654321 1112222233333333334 444555555544432 22245678
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 165 RSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 165 ~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
++.+..++++.++.||..|+..+..+...+
T Consensus 241 l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~ 270 (591)
T 2vgl_B 241 CERVTPRLSHANSAVVLSAVKVLMKFLELL 270 (591)
T ss_dssp HHHHTTCSCSSTTHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999887655
No 35
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.25 E-value=6.4e-12 Score=100.49 Aligned_cols=132 Identities=18% Similarity=0.163 Sum_probs=64.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhc--cccccCccc------
Q 039154 12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGV--FIPYVGGVE------ 82 (211)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~--l~~~ig~~~------ 82 (211)
..+...+++++..+|..++..+ +. +.+.. ++|++++||.+++.+++. +......++
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~~ 165 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKL 165 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHHH
Confidence 3455667777788887776643 11 12333 567777777777664321 000000000
Q ss_pred -cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHH
Q 039154 83 -HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK 161 (211)
Q Consensus 83 -~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~ 161 (211)
....--+.+..+++|+++.||..++..+ + .+.+..+.+|+.|.||..++..++
T Consensus 166 aa~~l~~~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~D~d~~VR~~aa~~l~----------- 219 (244)
T 1lrv_A 166 VAKRLPEESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLHDPDWTVRLAAVEHAS----------- 219 (244)
T ss_dssp HHHHSCGGGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGGCSSHHHHHHHHHHSC-----------
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCCCHHHHHHHHHcCC-----------
Confidence 0000012334445555555555555432 1 133555566666666666666543
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhH
Q 039154 162 TELRSIYTQLCQDDMPMVRRSAASNLR 188 (211)
Q Consensus 162 ~~l~~~~~~L~~D~~~~VR~aaa~~l~ 188 (211)
.+.+..| +|++|.||.+++.+|+
T Consensus 220 ---~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 ---LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ---HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred ---HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 1334445 6666666666666653
No 36
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.7e-10 Score=92.55 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=130.5
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhC-Ccc---hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-
Q 039154 11 IAVLTDEL-KNDDIQLRLNSIRRLSTIARALG-EER---TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH- 83 (211)
Q Consensus 11 l~~l~~~l-~s~~~~~R~~a~~~l~~ia~~lg-~~~---~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~- 83 (211)
++.++..+ ++.|+.+|..|++.++.+|..++ ++- ....++|.+.+ +.|..+.||.++...+..+++.+++...
T Consensus 62 ~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~ 141 (249)
T 2qk1_A 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS 141 (249)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC
Confidence 77888889 79999999999999999999998 543 33557788888 8999999999999999999997754221
Q ss_pred --ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--hH---HH-HhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154 84 --AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--SD---LV-DWFIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 84 --~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~~---~~-~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
.+.+++.+...++..++.||+.++..+..++...+. +. .. ..++|.+.++.+|....||..+.+.++.++..
T Consensus 142 ~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 142 GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 336777777888888999999999999999998874 32 34 78999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHh
Q 039154 156 APDILKTELRSIYTQL 171 (211)
Q Consensus 156 ~~~~~~~~l~~~~~~L 171 (211)
+|+. .+.|.+-.|
T Consensus 222 vG~~---~~~p~l~~L 234 (249)
T 2qk1_A 222 FGMN---TFVKTLEHL 234 (249)
T ss_dssp HCSG---GGHHHHHHS
T ss_pred hCHH---HHHHHHHHH
Confidence 9976 344444443
No 37
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.21 E-value=3.3e-10 Score=99.37 Aligned_cols=180 Identities=17% Similarity=0.138 Sum_probs=142.1
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCCcch-----hhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---
Q 039154 11 IAVLTDELKNDD-IQLRLNSIRRLSTIARALGEERT-----PKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--- 80 (211)
Q Consensus 11 l~~l~~~l~s~~-~~~R~~a~~~l~~ia~~lg~~~~-----~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--- 80 (211)
+..|++.|++++ +.+|..|+..|..++. +.... ....+|.+.+ +.++++.||..++..|++++..-..
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 196 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIAS--GTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD 196 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 677888898887 9999999999999875 32222 2346788888 8889999999999999999752110
Q ss_pred cccccccchHHhhhc-cchhhHHHHHHHHHHHHHHhhcC--hhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154 81 VEHAHVLLPPLETLC-TVEETCMRDKAVESLCRIGSQMR--ESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (211)
Q Consensus 81 ~~~~~~llp~l~~l~-~d~~~~VR~~a~~~l~~l~~~l~--~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~ 157 (211)
.-.....+|.|..++ ++.+..+|..|+.+|..++..-+ .......++|.+.++..++.+.+|..++..+..++....
T Consensus 197 ~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 276 (528)
T 4b8j_A 197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN 276 (528)
T ss_dssp HHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 011223567777777 67789999999999999998742 234456789999999999999999999999999986644
Q ss_pred hH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 158 DI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 158 ~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
.. .....+|.++.+++++++.||..|+..|++++.
T Consensus 277 ~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 277 DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 32 233578999999999999999999999999986
No 38
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.16 E-value=6.2e-12 Score=90.91 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=87.4
Q ss_pred hhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHH
Q 039154 50 IPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIP 128 (211)
Q Consensus 50 ~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p 128 (211)
+|.+.+ +.|+++.||..++..|+.+. ... .|.|..+++|+++.||..|+.+|..+.. ...+|
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~----~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~ 76 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMG----DEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVE 76 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCS----STT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhC----chH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence 455666 78888999999988888753 221 3777788888899999999999887763 23466
Q ss_pred HHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154 129 LVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRK 189 (211)
Q Consensus 129 ~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~ 189 (211)
.+.++.+|++|.||..++..++.+.. ...++.+..+++|+++.||.+|+..|++
T Consensus 77 ~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 77 PLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 66667789999999999999988752 3567888888999999999999988864
No 39
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.11 E-value=5.3e-11 Score=95.18 Aligned_cols=135 Identities=19% Similarity=0.132 Sum_probs=83.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
|...+...++|+++.+|..+++.+ +. +.+.. +.|+++.||.+++.+++.
T Consensus 75 ~~~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~ll~D~d~~VR~~aA~~l~~--------------- 124 (244)
T 1lrv_A 75 PVEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSALMFDEDREVRITVADRLPL--------------- 124 (244)
T ss_dssp CGGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGGTTTCSCHHHHHHHHHHSCT---------------
T ss_pred CHHHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHHHHcCCCHHHHHHHHHhCCH---------------
Confidence 445577778999999999988653 32 34566 889999999999997631
Q ss_pred hHHhhhccchhhHHHHHHHHHHHH-HHhhcC----hh----HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH
Q 039154 89 PPLETLCTVEETCMRDKAVESLCR-IGSQMR----ES----DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~-l~~~l~----~~----~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~ 159 (211)
+.+..+++|+++.||..++..+.. +...+- .+ .....--+.+..+.+|+.|.||..++..+ +
T Consensus 125 ~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l-------~-- 195 (244)
T 1lrv_A 125 EQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL-------R-- 195 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC-------C--
T ss_pred HHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhC-------C--
Confidence 123444555555555555543210 000000 00 00001113445666777777777777653 1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhhH
Q 039154 160 LKTELRSIYTQLCQDDMPMVRRSAASNLR 188 (211)
Q Consensus 160 ~~~~l~~~~~~L~~D~~~~VR~aaa~~l~ 188 (211)
.+.+..|++|++|.||.+++.+++
T Consensus 196 -----~~~L~~Ll~D~d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 196 -----GDDLLELLHDPDWTVRLAAVEHAS 219 (244)
T ss_dssp -----GGGGGGGGGCSSHHHHHHHHHHSC
T ss_pred -----HHHHHHHHcCCCHHHHHHHHHcCC
Confidence 146788899999999999999876
No 40
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=99.11 E-value=1.2e-10 Score=91.61 Aligned_cols=117 Identities=11% Similarity=0.014 Sum_probs=95.6
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHH-hhcCCCchHHHhHHhHHHhhccCCChHHHH
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKR-LAAGEWFTARVSACGLFHIAYPSAPDILKT 162 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~-l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~ 162 (211)
.+.++++...|.++++++||..|++.+... . ....++|.+.. ++.|++|+||..++..+..++...+.+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 567889999999999999999999977776 2 12668999998 999999999999999999998744544
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHhh
Q 039154 163 ELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFEDL 210 (211)
Q Consensus 163 ~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~L 210 (211)
..++.+...++|++++||++|+..+...++......-.+.++|++..|
T Consensus 139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L 186 (240)
T 3l9t_A 139 KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADL 186 (240)
T ss_dssp TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHh
Confidence 367889999999999999999999866555433344456688888765
No 41
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.11 E-value=6.8e-10 Score=89.52 Aligned_cols=179 Identities=12% Similarity=0.076 Sum_probs=136.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchh---hchhhhhhh-cCCChHHHHHHHHHHHhccccccCcc------cc
Q 039154 14 LTDELKNDDIQLRLNSIRRLSTIARALGEERTP---KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV------EH 83 (211)
Q Consensus 14 l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~---~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~------~~ 83 (211)
+...|-|.|...|..++..|.+....-. +.+. ..+++.+.- +.|.++.|-..+.+.|..+...+++. ..
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 3445557788999999988877644321 1111 113455444 66899999999989888877655432 12
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE 163 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~ 163 (211)
...++|.+.+=+.|..+.||..+-..+..+.+..++..+..+++. -.++.+|++|..|+..+..+.+..|.. ...
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~----g~ksKN~R~R~e~l~~l~~li~~~G~~-~~~ 204 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLD----ALKSKNARQRSECLLVIEYYITNAGIS-PLK 204 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHH----GGGCSCHHHHHHHHHHHHHHHHHHCSG-GGG
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHH----HHccCCHHHHHHHHHHHHHHHHhcCCC-ccc
Confidence 357889988888999999999999999999988888776666554 347789999999999999888777765 233
Q ss_pred HH---HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh
Q 039154 164 LR---SIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH 198 (211)
Q Consensus 164 l~---~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~ 198 (211)
.+ |...+++.|++..||.+|...+.++-...|...
T Consensus 205 ~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 205 SLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 56 889999999999999999999999999998753
No 42
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.04 E-value=2.1e-09 Score=82.78 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=115.5
Q ss_pred hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-----ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcC
Q 039154 45 TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-----AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMR 118 (211)
Q Consensus 45 ~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~ 118 (211)
......|.+.. +.+++++||..++..|.+++.. .+.. ....+|.+..+++++++.||..|+.+|..++..-+
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 34455677777 8889999999999999998852 2221 23467899999999999999999999999985432
Q ss_pred h---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154 119 E---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 119 ~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
. .....-.+|.+.++.++++..+|..++..+..++..-... .....+|.++++++++++.||..++..|.+++
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2 1233447899999999999999999999999998754332 23458899999999999999999999999998
Q ss_pred hh
Q 039154 192 AT 193 (211)
Q Consensus 192 ~~ 193 (211)
..
T Consensus 167 ~~ 168 (210)
T 4db6_A 167 SG 168 (210)
T ss_dssp TS
T ss_pred cC
Confidence 74
No 43
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.03 E-value=3.8e-09 Score=94.94 Aligned_cols=101 Identities=11% Similarity=0.062 Sum_probs=86.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
-++.+.+.|+|.|+.+|..|++.++.|+ ....-..++|.+.+ +.|.++.||++|+.+++.+... . ++....++
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~----~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~-~-p~~v~~~~ 181 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMG----SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK-V-PELMEMFL 181 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH-C-GGGGGGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-C-hHHHHHHH
Confidence 4788999999999999999999998874 44555778888888 8999999999999999999873 2 34456788
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhh
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQ 116 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~ 116 (211)
+.+..++.|.++.|+.+|+..+..+++.
T Consensus 182 ~~l~~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 182 PATKNLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp GGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
No 44
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.99 E-value=8.5e-11 Score=84.85 Aligned_cols=121 Identities=21% Similarity=0.173 Sum_probs=88.5
Q ss_pred CcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccc
Q 039154 7 PLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAH 85 (211)
Q Consensus 7 ~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~ 85 (211)
...++..++..|+|+++.+|..|+..|..+ |... +|.+.+ +.|+++.||..++..|+.+.. +
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~----~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~----~---- 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRM----GDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD----E---- 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSC----SSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS----H----
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHh----CchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC----H----
Confidence 456688999999999999999988777643 4322 477777 889999999999999999642 2
Q ss_pred ccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhh
Q 039154 86 VLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIA 152 (211)
Q Consensus 86 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l 152 (211)
..+|.|..+++|+++.||..|+.+|..++. ...+|.+.++.+|+.+.||..++..+..+
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 346777778889999999999999999873 34567777788899999999999887653
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.97 E-value=1.9e-09 Score=94.00 Aligned_cols=178 Identities=15% Similarity=0.094 Sum_probs=129.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-----
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH----- 83 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~----- 83 (211)
-+..+++.+++.++..|..++..+..++..-+........+|.+.+ +.+++++||..++..|.+++.. .++.
T Consensus 228 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~ 305 (529)
T 1jdh_A 228 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVC 305 (529)
T ss_dssp HHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT--CHHHHHHHH
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHHHHH
Confidence 3667788888999999999999999998766555556678999999 8899999999999999998762 1111
Q ss_pred ccccchHHhhhccch--hhHHHHHHHHHHHHHHhhcChh------HHHHhhHHHHHHhhcCCC-chHHHhHHhHHHhhcc
Q 039154 84 AHVLLPPLETLCTVE--ETCMRDKAVESLCRIGSQMRES------DLVDWFIPLVKRLAAGEW-FTARVSACGLFHIAYP 154 (211)
Q Consensus 84 ~~~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~l~~~------~~~~~l~p~i~~l~~d~~-~~vR~~~a~~l~~l~~ 154 (211)
....+|.+..++.+. ++.||..|+.+|..++...+.. ......+|.+.++..++. |.+|..++..+..++.
T Consensus 306 ~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 123467777777653 3799999999999997764432 223346888888888876 7999999999999986
Q ss_pred CCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154 155 SAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLRK 189 (211)
Q Consensus 155 ~~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~ 189 (211)
.-... ....++|.++.+++|.++.||+.++..+.+
T Consensus 386 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423 (529)
T ss_dssp SGGGHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence 32222 234678999999999999999977655544
No 46
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.94 E-value=1.8e-08 Score=81.57 Aligned_cols=181 Identities=12% Similarity=0.028 Sum_probs=132.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchh-------hchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc---
Q 039154 14 LTDELKNDDIQLRLNSIRRLSTIARALGEERTP-------KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE--- 82 (211)
Q Consensus 14 l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~-------~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~--- 82 (211)
+-+.|.|.+=..|.+++..+..+......+... ..+.+.+.. +.|.+..|...+.+.+..++...|...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 448899999999999999988766544333222 234566667 789999999999999999888665422
Q ss_pred -----cccccchHH-hhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154 83 -----HAHVLLPPL-ETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (211)
Q Consensus 83 -----~~~~llp~l-~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~ 156 (211)
....++|.+ +..+.|....+|..|..++..+++..... ..++..+....+..++.+|..++..+..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 223455654 45678999999999999999998765432 234455666778899999999988888876665
Q ss_pred ChH------HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 157 PDI------LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 157 ~~~------~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
|.. ..+.+++.+.+++.|.++.||.+|...++.+-..+|+.
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 543 33557777888999999999999999999999999964
No 47
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.92 E-value=2.1e-08 Score=88.34 Aligned_cols=180 Identities=12% Similarity=0.130 Sum_probs=141.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-----hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc--
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-----TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE-- 82 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-----~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~-- 82 (211)
+..+...++++++.++..++..|..++. +++. ....++|.+.+ +.+.++.|+..++..|++++. |.+.
T Consensus 253 lp~L~~LL~~~~~~v~~~a~~aL~~l~~--~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~--~~~~~~ 328 (529)
T 3tpo_A 253 LPTLVRLLHHNDPEVLADSCWAISYLTD--GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT--GTDEQT 328 (529)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT--SCHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhh--hhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHc--cchHHH
Confidence 4567788899999999999999988763 2221 23456788888 888999999999999999875 2222
Q ss_pred ---cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154 83 ---HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (211)
Q Consensus 83 ---~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~ 156 (211)
.....+|.|..++++.+..||..|+.+|..++..-... ....-++|.+..+..++.+.+|..++..+..++..-
T Consensus 329 ~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~ 408 (529)
T 3tpo_A 329 QKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGG 408 (529)
T ss_dssp HHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 22346788999999999999999999999998643221 223458899999999999999999999999887665
Q ss_pred ChHH-----HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 157 PDIL-----KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 157 ~~~~-----~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
..+. ....++.+..|++..++.|+..++..|.++.+..
T Consensus 409 ~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 409 TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 5442 2346789999999999999999999999887654
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.91 E-value=3.9e-08 Score=86.28 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=132.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc----chhhchhhhhhh-cC-CChHHHHHHHHHHHhccccccCccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE----RTPKELIPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGGVEHA 84 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~----~~~~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~~~~~ 84 (211)
++.+++.++|+|++.+..|++.+.++.+.=... -...-.+|.|.+ +. .++++++..++..|.+++. |.++..
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias--~~~e~~ 136 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS--GTSEQT 136 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHT--SCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc--CCHHHH
Confidence 889999999999999999999887764221110 123346798888 64 5679999999999999985 333222
Q ss_pred -----cccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCc-----hHHHhHHhHHHh
Q 039154 85 -----HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWF-----TARVSACGLFHI 151 (211)
Q Consensus 85 -----~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~-----~vR~~~a~~l~~ 151 (211)
.-.+|.|..++++++..||+.|+.+|.+++..-+. .....-.+|.+..+..++.. .+...++..+..
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 23579999999999999999999999999865322 12233456667777665432 345566777777
Q ss_pred hccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 152 AYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 152 l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
++..-... ....++|.+.++++++++.||..++..|..++.
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 261 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 76543222 356899999999999999999999999988875
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.90 E-value=2.2e-08 Score=88.20 Aligned_cols=188 Identities=14% Similarity=0.109 Sum_probs=138.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHH--------------------hCCc---------------------------
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARA--------------------LGEE--------------------------- 43 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~--------------------lg~~--------------------------- 43 (211)
+..|+..|+|.+..+|..|+..|..||.. +...
T Consensus 164 ip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~ 243 (529)
T 3tpo_A 164 IPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA 243 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccch
Confidence 56677888888888888888877777631 1100
Q ss_pred ---chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---cccccccchHHhhhccchhhHHHHHHHHHHHHHHhh
Q 039154 44 ---RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQ 116 (211)
Q Consensus 44 ---~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~ 116 (211)
.....++|.+.. +.+++++|+..++..|..++..-.. .-...-++|.|..++.+++..|+..|+.++..++..
T Consensus 244 ~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~ 323 (529)
T 3tpo_A 244 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 323 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc
Confidence 011345677777 7888899999999888887762110 012345778899999999999999999999998754
Q ss_pred cChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHH
Q 039154 117 MRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRK 189 (211)
Q Consensus 117 l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~ 189 (211)
-+.. .+..-.+|.+..+.+++...+|..+|..+..++..-... ....++|.++.++++.++.||+.|+..|.+
T Consensus 324 ~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n 403 (529)
T 3tpo_A 324 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITN 403 (529)
T ss_dssp CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3221 223446788888999999999999999999997654433 234588999999999999999999999999
Q ss_pred HHhhhCchh
Q 039154 190 FAATVEPAH 198 (211)
Q Consensus 190 ~~~~~~~~~ 198 (211)
++..-.++.
T Consensus 404 l~~~~~~~~ 412 (529)
T 3tpo_A 404 YTSGGTVEQ 412 (529)
T ss_dssp HHHHSCHHH
T ss_pred HHcCCCHHH
Confidence 987655543
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.89 E-value=4.2e-08 Score=86.08 Aligned_cols=180 Identities=12% Similarity=0.109 Sum_probs=140.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-----hhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc--
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-----TPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE-- 82 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-----~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~-- 82 (211)
+..+...+++++..+|..++..|..++. ++.. ....++|.+.+ +.+.++.|+..++..+++++.. .+.
T Consensus 234 lp~L~~LL~~~~~~v~~~A~~aL~~L~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~~~~ 309 (510)
T 3ul1_B 234 LPTLVRLLHHNDPEVLADSCWAISYLTD--GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQT 309 (510)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhh--chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CHHHH
Confidence 4567778899999999999999988763 2221 23456788888 8889999999999999998752 221
Q ss_pred ---cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154 83 ---HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (211)
Q Consensus 83 ---~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~ 156 (211)
.....+|.|..++++.+..||..|+.+|..++..-... ....-++|.+..+..+..+.+|..++..+..++..-
T Consensus 310 ~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 310 QKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp HHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC
Confidence 12346788889999999999999999999997643221 223458899999999999999999999999987765
Q ss_pred ChHH-----HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 157 PDIL-----KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 157 ~~~~-----~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
..+. ....++.+..|++++++.|+..+...|.++.+..
T Consensus 390 ~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 390 TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 5542 2345789999999999999999999999887654
No 51
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.89 E-value=3.2e-08 Score=86.15 Aligned_cols=199 Identities=10% Similarity=0.011 Sum_probs=140.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--h-hhchhhhhhh-cC-CChHHHHHHHHHHHhccccccCc--ccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER--T-PKELIPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGG--VEH 83 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--~-~~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~--~~~ 83 (211)
+..+++.|+++++.+|..|+..|..++..-.... . ....+|.+.+ +. ++++++|..++..|..++..-.. .-.
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 98 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 98 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 7788889999999999999999999874221100 0 1245666666 54 45899999999999998753110 011
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--h-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC---
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--S-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP--- 157 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~--- 157 (211)
..-.+|.|..+++++++.+|..|+..|..++..-+. + ....-.+|.+.++..++++.+|..++..+..++..-.
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 234678899999999999999999999999887433 2 2245688999999999999999888777665543210
Q ss_pred --------------------------------------hH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 158 --------------------------------------DI-----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 158 --------------------------------------~~-----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
++ .....++.+..++++.++.||+.++..+..++...
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCC
Confidence 00 11235777888888888999999998888888765
Q ss_pred CchhhHHHHHHHHHh
Q 039154 195 EPAHLKTDIMSIFED 209 (211)
Q Consensus 195 ~~~~~~~~llp~~~~ 209 (211)
+.......++|.+.+
T Consensus 259 ~~~~~~~~~i~~L~~ 273 (529)
T 1jdh_A 259 TKQEGMEGLLGTLVQ 273 (529)
T ss_dssp TTCSCCHHHHHHHHH
T ss_pred hhhHHHHhHHHHHHH
Confidence 443334455665544
No 52
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.82 E-value=3.2e-08 Score=81.20 Aligned_cols=168 Identities=11% Similarity=0.029 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhh--cCCChHHHHHHHHHHHhccccccCcccc-----ccccchHHhhh
Q 039154 24 QLRLNSIRRLSTIARALGEER--TPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPYVGGVEH-----AHVLLPPLETL 94 (211)
Q Consensus 24 ~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~ig~~~~-----~~~llp~l~~l 94 (211)
+.|..|+..|..+...+.... .+.--+|.+.. +.+.+++||..++..|++++.. .+.. ..-.+|.|..+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~--n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN--VAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCCHHHHHHH
Confidence 568888888877664322110 11123344433 6778999999999999999862 2222 22356777777
Q ss_pred ccc-hhhHHHHHHHHHHHHHHhhcCh--h-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHH
Q 039154 95 CTV-EETCMRDKAVESLCRIGSQMRE--S-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRS 166 (211)
Q Consensus 95 ~~d-~~~~VR~~a~~~l~~l~~~l~~--~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~ 166 (211)
++. .+..||..|+.+|..++...++ + ....-.+|.+..+.+++...+|..+|..+..++..-... .....+|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 774 4789999999999999876543 2 223457888888889999999999999999987662222 3456889
Q ss_pred HHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 167 IYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 167 ~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
.+..|+.++++.||..++..|+.++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999986
No 53
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.81 E-value=9.8e-08 Score=85.86 Aligned_cols=198 Identities=10% Similarity=0.022 Sum_probs=135.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc---hhhchhhhhhh-cCC-ChHHHHHHHHHHHhccccccCc--ccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER---TPKELIPFLSA-NND-DDDEVLLAMAEELGVFIPYVGG--VEH 83 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~---~~~~L~p~l~~-~~D-~~~~VR~~~a~~L~~l~~~ig~--~~~ 83 (211)
+..+++.|+++++.+|..|+..|..++..-.... .....+|.+.+ +.+ +++++|+.++..|..++..-.. .-.
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 7788899999999999999999999985432111 01245666666 544 5899999999999987763111 011
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh--
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-- 158 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~-- 158 (211)
....+|.|..++++++..+|..|+.+|.+++..-+.. ....-.+|.+.++..+++++++..++..+..++..-+.
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHH
Confidence 2346788999999999999999999999999875332 22456788888888888888888777776665532110
Q ss_pred ---------------------------------------H-----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 159 ---------------------------------------I-----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 159 ---------------------------------------~-----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
+ .....++.+.+++++.+..+|+.++..|.+++..-
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~ 255 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 255 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcc
Confidence 0 01124566777777777777777777777776654
Q ss_pred CchhhHHHHHHHHH
Q 039154 195 EPAHLKTDIMSIFE 208 (211)
Q Consensus 195 ~~~~~~~~llp~~~ 208 (211)
+.......++|.+.
T Consensus 256 ~~~~~~~~~i~~Lv 269 (644)
T 2z6h_A 256 TKQEGMEGLLGTLV 269 (644)
T ss_dssp TTCCSCHHHHHHHH
T ss_pred hhhhhhhhHHHHHH
Confidence 33333334555443
No 54
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.80 E-value=9.9e-08 Score=80.20 Aligned_cols=184 Identities=15% Similarity=0.121 Sum_probs=136.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhh-----chhhhhhh-c-CCChHHHHHHHHHHHhccccccCc--c
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPK-----ELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGG--V 81 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~-----~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~--~ 81 (211)
|..|+..|+|+++.+|..|+..|..++.. ..+..+. ..+|.+.+ + ...++++++.++..|.+++..-.. .
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhcc-CCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence 77888999999999999999999998642 1222333 33577766 3 456789999999999998863211 1
Q ss_pred cc--ccccchHHhhhccchhh----HHHHHHHHHHHHHHhh--cChhHH----HHhhHHHHHHhhcCCCchHHHhHHhHH
Q 039154 82 EH--AHVLLPPLETLCTVEET----CMRDKAVESLCRIGSQ--MRESDL----VDWFIPLVKRLAAGEWFTARVSACGLF 149 (211)
Q Consensus 82 ~~--~~~llp~l~~l~~d~~~----~VR~~a~~~l~~l~~~--l~~~~~----~~~l~p~i~~l~~d~~~~vR~~~a~~l 149 (211)
.. ..-.+|.|..++.+..+ .|++.|+..|..++.. -+++.. ..-.+|.+.++..+.+..++..++..+
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 287 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 287 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHH
Confidence 11 34567888888886644 5999999999998863 122221 233688888999999999999999999
Q ss_pred HhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 150 HIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 150 ~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
..++..-... .....+|.+.+|+++.++.+|+.|+..|.+++..-+
T Consensus 288 ~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 288 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9997542222 234568999999999999999999999999998633
No 55
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.80 E-value=1.6e-08 Score=90.94 Aligned_cols=173 Identities=15% Similarity=0.103 Sum_probs=128.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-----c
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-----A 84 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-----~ 84 (211)
+..+++.+++.+...|..++..|..++..-.........+|.+.+ +.+++++||..++..|.+++.. .+.. .
T Consensus 226 l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~--~~~~~~~v~~ 303 (644)
T 2z6h_A 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQ 303 (644)
T ss_dssp HHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 667788888899999999999999998765555556678999999 8889999999999999998762 2111 1
Q ss_pred cccchHHhhhccchh--hHHHHHHHHHHHHHHhhcChh------HHHHhhHHHHHHhhcCCC-chHHHhHHhHHHhhccC
Q 039154 85 HVLLPPLETLCTVEE--TCMRDKAVESLCRIGSQMRES------DLVDWFIPLVKRLAAGEW-FTARVSACGLFHIAYPS 155 (211)
Q Consensus 85 ~~llp~l~~l~~d~~--~~VR~~a~~~l~~l~~~l~~~------~~~~~l~p~i~~l~~d~~-~~vR~~~a~~l~~l~~~ 155 (211)
...+|.|..++.+.+ +.||..|+.+|..++...+.+ ......+|.+.++..++. +.+|..++..+..++..
T Consensus 304 ~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 304 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 235677777777643 799999999999998654432 223457888888888765 89999999999998764
Q ss_pred CChH---HHHHHHHHHHHhcCCCCHHHHHHHHH
Q 039154 156 APDI---LKTELRSIYTQLCQDDMPMVRRSAAS 185 (211)
Q Consensus 156 ~~~~---~~~~l~~~~~~L~~D~~~~VR~aaa~ 185 (211)
-... .....+|.+++++++..+.||+.++.
T Consensus 384 ~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~ 416 (644)
T 2z6h_A 384 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416 (644)
T ss_dssp GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhh
Confidence 2222 24567888899988876666554443
No 56
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.79 E-value=8.1e-08 Score=88.53 Aligned_cols=199 Identities=9% Similarity=0.027 Sum_probs=137.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-h--hhchhhhhhh-cC-CChHHHHHHHHHHHhccccccCc--ccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-T--PKELIPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGG--VEH 83 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-~--~~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~--~~~ 83 (211)
+..|+..|+++++.+|..|+..|..++..-+... . ....+|.+.+ +. ++++++|+.++..|..++..-.. ...
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~ 231 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF 231 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 6677888889999999999999999875322110 0 1245676666 54 45899999999999987653111 111
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh--HH-HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC----
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES--DL-VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA---- 156 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~--~~-~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~---- 156 (211)
....+|.|..++++++..||..|+.+|..++..-+.. .+ ..-.+|.+.++.+++++.+|..++..+..++...
T Consensus 232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHH
Confidence 2356888999999999999999999999999874332 22 3567888888888888888887766665444211
Q ss_pred ------C-------------------------------hH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 157 ------P-------------------------------DI-----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 157 ------~-------------------------------~~-----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
+ .. .....++.+..++++.++.+++.++..|.+++...
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 0 00 01124577888888888888888888888888765
Q ss_pred CchhhHHHHHHHHHh
Q 039154 195 EPAHLKTDIMSIFED 209 (211)
Q Consensus 195 ~~~~~~~~llp~~~~ 209 (211)
.+......++|.+.+
T Consensus 392 ~~~~~~~~~i~~Lv~ 406 (780)
T 2z6g_A 392 TKQEGMEGLLGTLVQ 406 (780)
T ss_dssp TTCSCCHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHH
Confidence 443334456665543
No 57
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.78 E-value=1.4e-08 Score=93.65 Aligned_cols=169 Identities=15% Similarity=0.110 Sum_probs=124.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-----c
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-----A 84 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-----~ 84 (211)
+..++..+++.+...+..++..|..++..-+.......++|.+.+ +.+.+++||..++..|++++.. .... .
T Consensus 362 l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~--~~~~~~~i~~ 439 (780)
T 2z6g_A 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQ 439 (780)
T ss_dssp HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CHHHHHHHHT
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHHHHHHHHH
Confidence 567788888999999999999999998766555556788999999 8899999999999999998762 2111 1
Q ss_pred cccchHHhhhccch-h-hHHHHHHHHHHHHHHhhcChh------HHHHhhHHHHHHhhcCCC-chHHHhHHhHHHhhccC
Q 039154 85 HVLLPPLETLCTVE-E-TCMRDKAVESLCRIGSQMRES------DLVDWFIPLVKRLAAGEW-FTARVSACGLFHIAYPS 155 (211)
Q Consensus 85 ~~llp~l~~l~~d~-~-~~VR~~a~~~l~~l~~~l~~~------~~~~~l~p~i~~l~~d~~-~~vR~~~a~~l~~l~~~ 155 (211)
...+|.|..++.+. + ..||..|+.+|..++...+.. ......+|.+.++..++. |.+|..++..+..++..
T Consensus 440 ~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 440 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519 (780)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Confidence 23567777777664 3 389999999999997654432 123446788888777665 69999999999999752
Q ss_pred CChH---HHHHHHHHHHHhcCCCCHHHHH
Q 039154 156 APDI---LKTELRSIYTQLCQDDMPMVRR 181 (211)
Q Consensus 156 ~~~~---~~~~l~~~~~~L~~D~~~~VR~ 181 (211)
-... ....++|.+++++++..+.+|+
T Consensus 520 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 548 (780)
T 2z6g_A 520 PANHAPLREQGAIPRLVQLLVRAHQDTQR 548 (780)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcchhHHH
Confidence 1111 1245778888888776554444
No 58
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.78 E-value=9.1e-08 Score=86.07 Aligned_cols=174 Identities=15% Similarity=0.125 Sum_probs=134.7
Q ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccc
Q 039154 11 IAVLTDELKND---DIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (211)
Q Consensus 11 l~~l~~~l~s~---~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ 86 (211)
++.+.+.++++ +...|..++..+--+ ..+|.+- ..+.+-+.+ +..++.+.|+.+--.+..+++ +.++....
T Consensus 37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l-~~~G~d~--s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~--~~~e~~~L 111 (621)
T 2vgl_A 37 LANIRSKFKGDKALDGYSKKKYVCKLLFI-FLLGHDI--DFGHMEAVNLLSSNRYTEKQIGYLFISVLVN--SNSELIRL 111 (621)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHH-HHHSCCC--CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCC--CCHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCCCC--chhHHHHHHHhcCCCHHHHHHHHHHHHHHcc--CCcHHHHH
Confidence 56667777753 677788887777443 5688754 356666667 788999999999888888776 22333334
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhh--cCCCchHHHhHHhHHHhhccCCChHHH-HH
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLA--AGEWFTARVSACGLFHIAYPSAPDILK-TE 163 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~--~d~~~~vR~~~a~~l~~l~~~~~~~~~-~~ 163 (211)
..+.+.+=++|.++.+|-.|+.+++.+.. .+..+.++|.+.++. .|.++.||+.|+..+..++...+.... ..
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~ 187 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGD 187 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchh
Confidence 45667777788999999999999999854 446678889999998 999999999999999999885432221 37
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 164 LRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
+.+.+.+++.|+++.|+.+|...+.+++..
T Consensus 188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 188 WTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 889999999999999999999999988764
No 59
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.73 E-value=4.8e-07 Score=83.35 Aligned_cols=181 Identities=11% Similarity=0.053 Sum_probs=135.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhc-----hhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKE-----LIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH 83 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~-----L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~ 83 (211)
.+..|+..++|+++.+|..|+..|..|| |.+..+.. .+|.+.. +...++.+|+.++.+|.+++..-.++..
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA---~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVC---GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHH---TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc---CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 4778899999999999999999999997 33334443 3477777 7778889999999999998753222111
Q ss_pred -----ccccchHHhhhccch-hhHHHHHHHHHHHHHHhhcCh---hHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhcc
Q 039154 84 -----AHVLLPPLETLCTVE-ETCMRDKAVESLCRIGSQMRE---SDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (211)
Q Consensus 84 -----~~~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l~~---~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~ 154 (211)
....+|.|..++..+ +...+..|+.+|..++..-+. ..+..-.+|.+..+..+++..||..++..+..++.
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 123678888888755 345567889999998875321 23344578889998888999999999999999976
Q ss_pred CCChH--HH--HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 155 SAPDI--LK--TELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 155 ~~~~~--~~--~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
.-... +. ...++.++.|++.++..||++|+..|..++..
T Consensus 653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 653 SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV 695 (810)
T ss_dssp SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence 32111 11 23678999999999999999999999999874
No 60
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.69 E-value=3.1e-07 Score=85.29 Aligned_cols=168 Identities=16% Similarity=0.120 Sum_probs=108.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhhcCCChHHHHHHHHHHHhccccccCcccccc---
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAH--- 85 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~--- 85 (211)
++.|+.-+.+++...|..|+-.|+.+ .+|+. ...+.|+.++.+ ++++.||+.++..||.+. .|.++...
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli--~vGTgn~~ai~~LL~~~~e--~~~e~vrR~aalgLGll~--~g~~e~~~~li 547 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLC--MLGTGKPEAIHDMFTYSQE--TQHGNITRGLAVGLALIN--YGRQELADDLI 547 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHT--TTCGGGGHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh--hcccCCHHHHHHHHHHHhc--cCcHHHHHHHHHHHHhhh--CCChHHHHHHH
Confidence 56667777777776776666666655 24543 233444444332 445567777777777542 22222111
Q ss_pred ------------------------------ccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhc
Q 039154 86 ------------------------------VLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAA 135 (211)
Q Consensus 86 ------------------------------~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~ 135 (211)
.|-.+|..+.+|.++.||..|+-+|+.++-.-+ +.+...+..+.+
T Consensus 548 ~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~-----e~v~rlv~~L~~ 622 (963)
T 4ady_A 548 TKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY-----TTVPRIVQLLSK 622 (963)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-----SSHHHHTTTGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-----HHHHHHHHHHHh
Confidence 122234444455566666666666666543321 234444455778
Q ss_pred CCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 136 GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 136 d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
+..+.||+.++..++.++..-+.. ..+..+..+.+|++..||++|+.+|+.++.
T Consensus 623 ~~d~~VR~gAalALGli~aGn~~~---~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 623 SHNAHVRCGTAFALGIACAGKGLQ---SAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSCCH---HHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHhccCCCcH---HHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 888999999999999998777653 677788889999999999999999988874
No 61
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.68 E-value=8.4e-08 Score=86.18 Aligned_cols=172 Identities=12% Similarity=0.008 Sum_probs=131.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp 89 (211)
++.+.+.+++.+...|..+++.+--+ ..+|.+- ..+.+-+.+ +.+++.+.|+..--.+..+++. .++......+
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~-~~~G~d~--~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l~in 110 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYM-HMLGYPA--HFGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLLMTN 110 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHH-HHTTCCC--GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHH-HHcCCCC--cchHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHHHHH
Confidence 45566677777777777777666443 4677643 345555556 6788888888887777766652 2233334556
Q ss_pred HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHH
Q 039154 90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT 169 (211)
Q Consensus 90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~ 169 (211)
.|.+-++|.++.||..|+.+|+.++. .+....++|.+.++.+|++..||+.++..+..++...++ ....+++.+.
T Consensus 111 ~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l~ 185 (618)
T 1w63_A 111 CIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-LMEMFLPATK 185 (618)
T ss_dssp HHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGTT
T ss_pred HHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHHH
Confidence 77778889999999999999999973 355678899999999999999999999999999876443 3347888889
Q ss_pred HhcCCCCHHHHHHHHHhhHHHHh
Q 039154 170 QLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 170 ~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
.++.|+++.|+.+|+..|.+++.
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHhCCCCHhHHHHHHHHHHHHHH
Confidence 99999999999999999988765
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.68 E-value=6.1e-07 Score=80.69 Aligned_cols=102 Identities=9% Similarity=0.018 Sum_probs=85.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c--CCChHHHHHHHHHHHhccccccCccccc-cc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-N--NDDDDEVLLAMAEELGVFIPYVGGVEHA-HV 86 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~--~D~~~~VR~~~a~~L~~l~~~ig~~~~~-~~ 86 (211)
++.+.+.++|.|+.+|-.|++.++.| +....-+.+.|.+.+ + .|.++.||+.|+-++..+.+ ..++... ..
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i----~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~-~~p~~~~~~~ 187 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANV----GSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR-TSPDLVPMGD 187 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHH----CCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HCGGGCCCCS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhcc----CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH-hChhhcCchh
Confidence 77889999999999999999999876 344566788899988 7 89999999999999999988 3333322 27
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHHhhc
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIGSQM 117 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l 117 (211)
+.+.+..++.|.++.|+.+|+..+..+++.-
T Consensus 188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 8889999999999999999999998887653
No 63
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.67 E-value=2.8e-07 Score=86.58 Aligned_cols=132 Identities=16% Similarity=0.090 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhccccccCccccccccchHHhhhcc------chhhHHHHHHHHHHHHHHhhc-----Chh------HHHH
Q 039154 62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT------VEETCMRDKAVESLCRIGSQM-----RES------DLVD 124 (211)
Q Consensus 62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~------d~~~~VR~~a~~~l~~l~~~l-----~~~------~~~~ 124 (211)
.+|++++..|..++...| +.....+++.+...+. +++|..|++|+.+++.++... +.. .+..
T Consensus 376 s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred CcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 489999999999999877 5556667777666655 567899999999999998653 111 2222
Q ss_pred hhHHHHHHhhcCC---CchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 125 WFIPLVKRLAAGE---WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 125 ~l~p~i~~l~~d~---~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
.+...+.....|+ ...||..+|..++.++..+.+++...+++.+++.+.|+++.||.+|+.+|..++...
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 2222222223455 778999999999999998877778888999999999999999999999999998854
No 64
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.63 E-value=7.7e-07 Score=81.97 Aligned_cols=178 Identities=12% Similarity=0.093 Sum_probs=136.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-----hhhchhhhhhh-cCCC-hHHHHHHHHHHHhccccccCcccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-----TPKELIPFLSA-NNDD-DDEVLLAMAEELGVFIPYVGGVEH 83 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-----~~~~L~p~l~~-~~D~-~~~VR~~~a~~L~~l~~~ig~~~~ 83 (211)
+..|+..|++.++..|..|+..|..++..-.++. .....+|.+.+ +..+ +...+..++..|.+++.. +++.
T Consensus 538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~--~d~~ 615 (810)
T 3now_A 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM--NESV 615 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS--CHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC--CHHH
Confidence 5677888999999999999999999875433322 11246777777 5544 556667888999998863 2221
Q ss_pred -----ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHH-----HhhHHHHHHhhcCCCchHHHhHHhHHHhhc
Q 039154 84 -----AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLV-----DWFIPLVKRLAAGEWFTARVSACGLFHIAY 153 (211)
Q Consensus 84 -----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~-----~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~ 153 (211)
..-.+|.|..++.+++..||..|+..+.+++.. ++... .-.+|.+..|...+...+|..+|..+..++
T Consensus 616 ~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt 693 (810)
T 3now_A 616 RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT 693 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 234578899999999999999999999999863 33222 236788889999999999999999999997
Q ss_pred cCCChH----HH-HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 154 PSAPDI----LK-TELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 154 ~~~~~~----~~-~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
..-... .. ...+|.+..|+++.+..||+.|+..+.+++.
T Consensus 694 ~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 743222 22 4688999999999999999999999999987
No 65
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.56 E-value=1.3e-06 Score=75.81 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=135.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhh-----chhhhhhh-c-CCChHHHHHHHHHHHhccccccCc--c
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPK-----ELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGG--V 81 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~-----~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~--~ 81 (211)
|..|+..|+++++.++..|+..|..++.. ..+..+. ..+|.+.+ + ...++.++..++..|.+++..-.. .
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 77888999999999999999999888631 1122333 33566666 3 456789999999999998863211 1
Q ss_pred cc--ccccchHHhhhccchhh----HHHHHHHHHHHHHHhh--cChhH----HHHhhHHHHHHhhcCCCchHHHhHHhHH
Q 039154 82 EH--AHVLLPPLETLCTVEET----CMRDKAVESLCRIGSQ--MRESD----LVDWFIPLVKRLAAGEWFTARVSACGLF 149 (211)
Q Consensus 82 ~~--~~~llp~l~~l~~d~~~----~VR~~a~~~l~~l~~~--l~~~~----~~~~l~p~i~~l~~d~~~~vR~~~a~~l 149 (211)
.. ..-.+|.|..++....+ .|++.|+..|..++.. -+++. ...-.+|.+.++..+.+..++..++..+
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL 403 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence 11 24567888888876644 4999999999998863 22222 1233688888999999999999999999
Q ss_pred HhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 150 HIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 150 ~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
..++..-... .....+|.+..|++..++.+|+.|+..|.+++..-
T Consensus 404 ~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9997542222 23457899999999999999999999999998753
No 66
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.50 E-value=2.2e-07 Score=77.92 Aligned_cols=106 Identities=9% Similarity=0.129 Sum_probs=87.7
Q ss_pred CCCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc
Q 039154 5 DEPLYPIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH 83 (211)
Q Consensus 5 ~~~~~pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~ 83 (211)
++-+.-++.+.+.+++.|+..|-.|++.++.|. .+..-+.+.+.+.+ +.|.+|.||++|+-....+.+. . ++.
T Consensus 100 ~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~----~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~-pe~ 173 (355)
T 3tjz_B 100 EDVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT----DSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-S-FDV 173 (355)
T ss_dssp SCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHC----CTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-C-HHH
T ss_pred HHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-C-HHH
Confidence 455667899999999999999999999998773 44566788899999 9999999999999998887763 2 334
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhh
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQ 116 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~ 116 (211)
...+++-+.+++.|.++.|...|+..+..+.+.
T Consensus 174 v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 174 VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 456888899999999999998888888887763
No 67
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.49 E-value=1.5e-06 Score=70.05 Aligned_cols=146 Identities=11% Similarity=0.104 Sum_probs=119.0
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHHHHHHhCCc---ch---hhchhhhhhh-cCCChHHHHHHHHHHHhccccccC
Q 039154 11 IAVLTDELK----NDDIQLRLNSIRRLSTIARALGEE---RT---PKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG 79 (211)
Q Consensus 11 l~~l~~~l~----s~~~~~R~~a~~~l~~ia~~lg~~---~~---~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig 79 (211)
++.+..++. +.|+.+-..++..|..+...++.. -. ...++|++.+ +.|..+.||..+-+.+..+....+
T Consensus 85 lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~ 164 (266)
T 2of3_A 85 SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG 164 (266)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC
Confidence 666777665 789999888999998887666442 22 3678899999 999999999999988888877554
Q ss_pred ccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhH---HHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154 80 GVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFI---PLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (211)
Q Consensus 80 ~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~---p~i~~l~~d~~~~vR~~~a~~l~~l~~~~ 156 (211)
+. .+.+.+.+-++..++.+|..++..+..+.+..|... ...+ |.+.++.+|+.-.||.+|...+..+|...
T Consensus 165 ~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 165 PL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 43 455666566688899999999999999999998873 4467 99999999999999999999999999999
Q ss_pred ChHHHH
Q 039154 157 PDILKT 162 (211)
Q Consensus 157 ~~~~~~ 162 (211)
|+..++
T Consensus 239 Gd~v~k 244 (266)
T 2of3_A 239 GDQMWK 244 (266)
T ss_dssp TTHHHH
T ss_pred hHHHHH
Confidence 987444
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.43 E-value=5.4e-06 Score=77.65 Aligned_cols=185 Identities=14% Similarity=0.167 Sum_probs=137.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH-HhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc-cccc-
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIAR-ALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE-HAHV- 86 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~-~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~-~~~~- 86 (211)
++.+.+.+...+...|..+...+..+.. ..+.......++..+.+ +.+...- ..++..+..+++..|... ...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 4555666665445666677766666543 22222333456666666 6665444 788888888887776422 2222
Q ss_pred --cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHH-hhcCCCchHHHhHHhHHHhhccCCChH---H
Q 039154 87 --LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKR-LAAGEWFTARVSACGLFHIAYPSAPDI---L 160 (211)
Q Consensus 87 --llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~-l~~d~~~~vR~~~a~~l~~l~~~~~~~---~ 160 (211)
++|.+-....|....||.+|..+...+++.++++-. ..++|.+.. +.....|..+..+...+..++...+.+ .
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~ 172 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR 172 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 457777788899999999999999999999999988 666666654 544557999999999999999877555 5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh
Q 039154 161 KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH 198 (211)
Q Consensus 161 ~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~ 198 (211)
..+++|.+.....|.-++|.+++...+.+++..++-..
T Consensus 173 ~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d 210 (986)
T 2iw3_A 173 MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD 210 (986)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence 68999999999999999999999999999999987543
No 69
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.42 E-value=2.7e-06 Score=71.41 Aligned_cols=185 Identities=14% Similarity=0.145 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcchhh------chhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc-----cccch
Q 039154 22 DIQLRLNSIRRLSTIARALGEERTPK------ELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA-----HVLLP 89 (211)
Q Consensus 22 ~~~~R~~a~~~l~~ia~~lg~~~~~~------~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~-----~~llp 89 (211)
++..|..|+..|..++ .+.+..+. -.+|.+.+ +..++++|+..++..|.+++.. ..+... .-.+|
T Consensus 97 ~~~~q~~Aa~aL~nLa--~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~i~~~G~Ip 173 (354)
T 3nmw_A 97 SITLRRYAGMALTNLT--FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVK 173 (354)
T ss_dssp HHHHHHHHHHHHHHHT--SSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHH--cCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhcc-CCHHHHHHHHHCCCHH
Confidence 4677888999998886 34433333 34888888 8888999999999999998752 111222 23467
Q ss_pred HHhhh-ccchhhHHHHHHHHHHHHHHhhcCh--hHH--HHhhHHHHHHhhcCCC----chHHHhHHhHHHhhccC--CCh
Q 039154 90 PLETL-CTVEETCMRDKAVESLCRIGSQMRE--SDL--VDWFIPLVKRLAAGEW----FTARVSACGLFHIAYPS--APD 158 (211)
Q Consensus 90 ~l~~l-~~d~~~~VR~~a~~~l~~l~~~l~~--~~~--~~~l~p~i~~l~~d~~----~~vR~~~a~~l~~l~~~--~~~ 158 (211)
.|..+ .+..+..+++.|+.+|..++...+. ..+ ..-.+|.+.++..++. ..++..++..+..++.. -++
T Consensus 174 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~ 253 (354)
T 3nmw_A 174 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 253 (354)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCH
Confidence 77775 5666788999999999999874322 222 3456788877776543 25888888888877652 223
Q ss_pred HHH-----HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch----hhHHHHHHHHHhh
Q 039154 159 ILK-----TELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA----HLKTDIMSIFEDL 210 (211)
Q Consensus 159 ~~~-----~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~----~~~~~llp~~~~L 210 (211)
+.+ ...+|.++.++++.+..|++.|+..|.+++.. .++ .+..-.+|.+.+|
T Consensus 254 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~L 313 (354)
T 3nmw_A 254 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNL 313 (354)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHH
Confidence 322 34689999999999999999999999999742 122 2223346666554
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.39 E-value=2.2e-05 Score=59.54 Aligned_cols=176 Identities=14% Similarity=0.097 Sum_probs=121.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCc--chhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEE--RTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~--~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
++.++..|.+|--.+|.+|+..+..+++..+.- -..++|+-++. .++.-..-..++..+|.++. +.++ ....+.
T Consensus 34 l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~--ksEaIpltqeIa~a~G~la~-i~Pe-~v~~vV 109 (253)
T 2db0_A 34 LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK--KSEAIPLTQEIAKAFGQMAK-EKPE-LVKSMI 109 (253)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH--HCCSHHHHHHHHHHHHHHHH-HCHH-HHHHHH
T ss_pred HHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh--hcccCchHHHHHHHHhHHHH-hCHH-HHHhhH
Confidence 678888997777899999999999998665532 12233333333 35555556788999999988 4444 445667
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~ 168 (211)
|.+..=..-.++.+|......|..+...-+.-- ..+..-+..|.+|++-.-|.++..-++.++. -+..+..-++|-+
T Consensus 110 p~lfanyrigd~kikIn~~yaLeeIaranP~l~--~~v~rdi~smltskd~~Dkl~aLnFi~alGe-n~~~yv~PfLprL 186 (253)
T 2db0_A 110 PVLFANYRIGDEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGE-NSFKYVNPFLPRI 186 (253)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT-TTHHHHGGGHHHH
T ss_pred HHHHHHHhcCCccceecHHHHHHHHHHhChHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-cCccccCcchHHH
Confidence 776555555588899988888888877643211 2233334556778775555555554444432 2334677789999
Q ss_pred HHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 169 TQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 169 ~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
+.|+.|.+..||.++...|++++..
T Consensus 187 ~aLL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 187 INLLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCcchhhhHHHHHHHHHHHHc
Confidence 9999999999999999999999864
No 71
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.37 E-value=1e-05 Score=66.20 Aligned_cols=142 Identities=11% Similarity=-0.007 Sum_probs=109.1
Q ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhCCcchh-----hchhhhhhh-cC-CChHHHHHHHHHHHhccccccCc--
Q 039154 11 IAVLTD-ELKNDDIQLRLNSIRRLSTIARALGEERTP-----KELIPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGG-- 80 (211)
Q Consensus 11 l~~l~~-~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~-----~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~-- 80 (211)
+..++. .|+|+++.+|..|+..|+.++.. .+..+ ...+|.+.+ +. +.++.||+.++-+|.+++..-..
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~--n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~ 160 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQN--VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL 160 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 556788 89999999999999999998742 22222 234566666 55 45789999999999998763211
Q ss_pred cc-cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh----HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154 81 VE-HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES----DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 81 ~~-~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~----~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
.. .....+|.|..++++.+..||..|+.+|..++.. +++ .+..-++|.+..+..++...+|..++..+..+...
T Consensus 161 ~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 161 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 11 1235788999999999999999999999999876 333 23445788888998999999999999999998776
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.34 E-value=1.7e-05 Score=73.76 Aligned_cols=184 Identities=15% Similarity=0.034 Sum_probs=101.2
Q ss_pred HHHHHHHhc---CC--CHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc
Q 039154 11 IAVLTDELK---ND--DIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA 84 (211)
Q Consensus 11 l~~l~~~l~---s~--~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~ 84 (211)
|...+..=. .+ ++.+|..|+-.|+.+. +|+. +++++..+.+ +.|++..+|..++-.||.+.---|..+..
T Consensus 434 L~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~--~GS~--~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai 509 (963)
T 4ady_A 434 LKNIIVENSGTSGDEDVDVLLHGASLGIGLAA--MGSA--NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAI 509 (963)
T ss_dssp HHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS--TTCC--CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHcCccccccccccHHHHHHHHHHHHHHh--cCCC--CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHH
Confidence 455555433 22 3567888999998864 4654 3455556666 55677788999999999753211223333
Q ss_pred cccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHh---------------------------------hHHHHH
Q 039154 85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDW---------------------------------FIPLVK 131 (211)
Q Consensus 85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~---------------------------------l~p~i~ 131 (211)
+.|+ ..+.++.++.||..++-+|+-+.- +.++..+. +-.++.
T Consensus 510 ~~LL---~~~~e~~~e~vrR~aalgLGll~~--g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~ 584 (963)
T 4ady_A 510 HDMF---TYSQETQHGNITRGLAVGLALINY--GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLH 584 (963)
T ss_dssp HHHH---HHHHHCSCHHHHHHHHHHHHHHTT--TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHH---HHHhccCcHHHHHHHHHHHHhhhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3333 334456667888888888886632 11111111 111333
Q ss_pred HhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154 132 RLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIF 207 (211)
Q Consensus 132 ~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~ 207 (211)
.+.+|+...||.+++..++.+...-.+ ...+.+..|.++.+|.||++++.++|.+..--|...+...|.|+.
T Consensus 585 ~~~~d~~d~VRraAViaLGlI~~g~~e----~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 585 VAVSDSNDDVRRAAVIALGFVLLRDYT----TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTSSSCS----SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HhccCCcHHHHHHHHHHHHhhccCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 334455555565555555554332211 122333345667778888888877777664444444444444443
No 73
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.33 E-value=3.6e-06 Score=67.91 Aligned_cols=145 Identities=8% Similarity=0.052 Sum_probs=110.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc--------hhhchhhhhhh--cCCChHHHHHHHHHHHhccccccCcc
Q 039154 12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEER--------TPKELIPFLSA--NNDDDDEVLLAMAEELGVFIPYVGGV 81 (211)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~--------~~~~L~p~l~~--~~D~~~~VR~~~a~~L~~l~~~ig~~ 81 (211)
..+...++|.|..+...+++.+..++..+|... ....++|.+.+ +.|..+-+|..+.+.+-.++...+.
T Consensus 58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~- 136 (278)
T 4ffb_C 58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS- 136 (278)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-
Confidence 456667889999999999999999998887642 22456776665 5788899999998888887764442
Q ss_pred ccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH-----HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154 82 EHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL-----VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (211)
Q Consensus 82 ~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~-----~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~ 156 (211)
...++..+...++..++.||..++..|..+...+|...+ ...+++.+.++.+|.+..||.++..++..++..+
T Consensus 137 --~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 137 --ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp --SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred --HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 234556666777888999999999999999988876533 3456777888899999999999999999999999
Q ss_pred ChH
Q 039154 157 PDI 159 (211)
Q Consensus 157 ~~~ 159 (211)
|+.
T Consensus 215 G~~ 217 (278)
T 4ffb_C 215 GNN 217 (278)
T ss_dssp ---
T ss_pred Ccc
Confidence 864
No 74
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.31 E-value=7.4e-06 Score=64.29 Aligned_cols=192 Identities=16% Similarity=0.174 Sum_probs=149.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC---cchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC-ccccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGE---ERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG-GVEHA 84 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~---~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig-~~~~~ 84 (211)
-+..+++.|.++|..++.++...+.++-+.... ...-+.++|-+.+ +.+.++-|-.-+.+.|+.+.+.+. ++...
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 477888999999999999999999999887532 1344677788888 889999999999999999887543 23445
Q ss_pred cccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHH
Q 039154 85 HVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTE 163 (211)
Q Consensus 85 ~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~ 163 (211)
..+...+..+.+..++-.|++|++.++.+ +... ...-+..++.++.++..-+++.++...+-+++..-+.. ..+.
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~ 189 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE---DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTL 189 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGG
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc---chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHH
Confidence 56778889999988999999999999998 3322 23456666777778888899999999998888776654 4566
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHH
Q 039154 164 LRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMS 205 (211)
Q Consensus 164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp 205 (211)
++.-.-.+++.+++.++.-|...+..+...==++++...+.-
T Consensus 190 I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~ 231 (265)
T 3b2a_A 190 ILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK 231 (265)
T ss_dssp TTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH
Confidence 666677888999999999999999988876334555554443
No 75
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.29 E-value=1.5e-05 Score=69.14 Aligned_cols=186 Identities=15% Similarity=0.134 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcchh------hchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccc-----cccc
Q 039154 21 DDIQLRLNSIRRLSTIARALGEERTP------KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHA-----HVLL 88 (211)
Q Consensus 21 ~~~~~R~~a~~~l~~ia~~lg~~~~~------~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~-----~~ll 88 (211)
+++..+..|+..|..++ .+.+..+ ...+|.+.+ +..++++|+..++..|.+++..- .+... .-.+
T Consensus 212 ~~~~l~~~Aa~aL~nLa--~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~-~~~~k~~I~~~GaI 288 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLT--FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA-DVNSKKTLREVGSV 288 (458)
T ss_dssp HHHHHHHHHHHHHHHHH--TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSC-CHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHh--CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC-CHHHHHHHHHcCCH
Confidence 34667888888888887 3443222 234788888 88889999999999999987521 11222 2346
Q ss_pred hHHhhh-ccchhhHHHHHHHHHHHHHHhhcCh--hHH--HHhhHHHHHHhhcCCCc----hHHHhHHhHHHhhccC--CC
Q 039154 89 PPLETL-CTVEETCMRDKAVESLCRIGSQMRE--SDL--VDWFIPLVKRLAAGEWF----TARVSACGLFHIAYPS--AP 157 (211)
Q Consensus 89 p~l~~l-~~d~~~~VR~~a~~~l~~l~~~l~~--~~~--~~~l~p~i~~l~~d~~~----~vR~~~a~~l~~l~~~--~~ 157 (211)
|.|..+ ....+..+++.|+.+|..++...+. ..+ ..-.+|.+.++..+..- .++..++..+..++.. -+
T Consensus 289 ~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 368 (458)
T 3nmz_A 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368 (458)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC
Confidence 777775 5666788999999999998874322 222 34467888777665432 5888888888887652 22
Q ss_pred hHH-----HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch----hhHHHHHHHHHhh
Q 039154 158 DIL-----KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA----HLKTDIMSIFEDL 210 (211)
Q Consensus 158 ~~~-----~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~----~~~~~llp~~~~L 210 (211)
.+. ....+|.++.++++.+..|++.|+..|.+++.. +++ .+..-.+|.+.+|
T Consensus 369 ~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~L 429 (458)
T 3nmz_A 369 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNL 429 (458)
T ss_dssp HHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHH
Confidence 332 234689999999999999999999999999842 222 2223356666554
No 76
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.28 E-value=7.9e-06 Score=76.73 Aligned_cols=175 Identities=7% Similarity=-0.030 Sum_probs=120.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cC------CChHHHHHHHHHHHhccccccC-cccc-cc-----
Q 039154 20 NDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NN------DDDDEVLLAMAEELGVFIPYVG-GVEH-AH----- 85 (211)
Q Consensus 20 s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~------D~~~~VR~~~a~~L~~l~~~ig-~~~~-~~----- 85 (211)
++..+.|..|..-+..++...| +..-..+++++.+ +. +.++..|.++.-.++.++.... .+.. ..
T Consensus 372 ~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 372 SDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp ----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred ccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 3345789999999999999998 5555677788766 44 5678899999999999876321 1100 10
Q ss_pred ccchHHh----hhccch---hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC--
Q 039154 86 VLLPPLE----TLCTVE---ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA-- 156 (211)
Q Consensus 86 ~llp~l~----~l~~d~---~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~-- 156 (211)
.+.+.+. ..+.|. ++.||..|+..++++++.+.++ ....++|.+.+...|++.+||.++|..+..++...
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~ 529 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES 529 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccc
Confidence 2323222 223555 7899999999999999998654 45667777777778888999999999999988742
Q ss_pred --------ChH----HHHHHHHHHHHhcCCCC---HH--HHHHHHHhhHHHHhhhCc
Q 039154 157 --------PDI----LKTELRSIYTQLCQDDM---PM--VRRSAASNLRKFAATVEP 196 (211)
Q Consensus 157 --------~~~----~~~~l~~~~~~L~~D~~---~~--VR~aaa~~l~~~~~~~~~ 196 (211)
..+ +...+++.++.+++... +. ....+...+..++..++.
T Consensus 530 ~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~ 586 (960)
T 1wa5_C 530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED 586 (960)
T ss_dssp SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH
Confidence 222 56777777777776641 11 345777888888877764
No 77
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.22 E-value=1.7e-05 Score=74.13 Aligned_cols=169 Identities=9% Similarity=0.027 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c----CCChHHHHHHHHHHHhccccccCccc--cccccchHHhhhccc
Q 039154 25 LRLNSIRRLSTIARALGEERTPKELIPFLSA-N----NDDDDEVLLAMAEELGVFIPYVGGVE--HAHVLLPPLETLCTV 97 (211)
Q Consensus 25 ~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~----~D~~~~VR~~~a~~L~~l~~~ig~~~--~~~~llp~l~~l~~d 97 (211)
.|..+..-+..++..+|. .+-..+.+++.+ + .+.++..|.++.-.++.+++.+.... ....+++.+..+..
T Consensus 423 ~r~~~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~- 500 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISI- 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCC-
T ss_pred HHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCC-
Confidence 367777788888888883 445666677666 5 56789999999999999998665422 22334555555554
Q ss_pred hhhHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcC
Q 039154 98 EETCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQ 173 (211)
Q Consensus 98 ~~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~ 173 (211)
+++.||..++..++.+++.+... ..-..+++.+.+..++ .+||..+|..|..++..++.. +.+.++..+.++++
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~ 578 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLM 578 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 46779999999999999876532 3445667776665555 689999999999998877665 56777777777766
Q ss_pred C--CCHHHHHHHHHhhHHHHhhhCch
Q 039154 174 D--DMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 174 D--~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
. -...+|..+..+++.++...+++
T Consensus 579 ~~~~~~~~~~~~~eai~~i~~~~~~~ 604 (963)
T 2x19_B 579 KQIHKTSQCMWLMQALGFLLSALQVE 604 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHH
Confidence 3 46899999999999999887743
No 78
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.21 E-value=1.9e-05 Score=68.28 Aligned_cols=176 Identities=13% Similarity=0.040 Sum_probs=122.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchh-----hchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTP-----KELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH 83 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~-----~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~ 83 (211)
-|..++..|+|+++..|..|+..|..++. +.+..+ ...+|.+.+ +..++++++..++..|.+++. +.++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~--~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~--~~~~~ 78 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCF--QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF--RSTTN 78 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTS--SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCHHH
Confidence 36778899999999999999999999873 443333 445688888 888999999999999999986 22233
Q ss_pred cc-----ccchHHhhhcc-chhhHHHHHHHHHHHHHHhhcCh-hHHHHhhHHHHHHhh--------cCC--------Cch
Q 039154 84 AH-----VLLPPLETLCT-VEETCMRDKAVESLCRIGSQMRE-SDLVDWFIPLVKRLA--------AGE--------WFT 140 (211)
Q Consensus 84 ~~-----~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~-~~~~~~l~p~i~~l~--------~d~--------~~~ 140 (211)
.. -.+|.|..+++ ..+..+|+.|+.+|..++..-.. ..+.+-.+|.+.++. .++ +..
T Consensus 79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHH
Confidence 32 34788889888 77889999999999999976221 212226777777776 233 234
Q ss_pred HHHhHHhHHHhhccCCChHHHH------HHHHHHHHhcCC------CCHHHHHHHHHhhHHHH
Q 039154 141 ARVSACGLFHIAYPSAPDILKT------ELRSIYTQLCQD------DMPMVRRSAASNLRKFA 191 (211)
Q Consensus 141 vR~~~a~~l~~l~~~~~~~~~~------~l~~~~~~L~~D------~~~~VR~aaa~~l~~~~ 191 (211)
+...++..+..++.. ++.+. ..+|.+..++++ .+..++..++..|.+++
T Consensus 159 v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 556888889888875 33221 567777777763 33445555555555553
No 79
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.20 E-value=4.5e-05 Score=69.63 Aligned_cols=181 Identities=15% Similarity=0.124 Sum_probs=125.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhch-----hhhhhh-cCCChH---HHHHHHHHHHhcccccc--
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKEL-----IPFLSA-NNDDDD---EVLLAMAEELGVFIPYV-- 78 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L-----~p~l~~-~~D~~~---~VR~~~a~~L~~l~~~i-- 78 (211)
-+..|...++|+++..|..+++.|..++.. ...|..+ +|.+.+ +....+ .+|..++.+|..+.-..
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d---~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRS---KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTS---GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 356678889999999999999999999733 3333333 355555 444433 38999999998877432
Q ss_pred ----CccccccccchHHhhhccc-hhh-------------HHHHHHHHHHHHHHhhcCh--h-----HHH-HhhHHHHHH
Q 039154 79 ----GGVEHAHVLLPPLETLCTV-EET-------------CMRDKAVESLCRIGSQMRE--S-----DLV-DWFIPLVKR 132 (211)
Q Consensus 79 ----g~~~~~~~llp~l~~l~~d-~~~-------------~VR~~a~~~l~~l~~~l~~--~-----~~~-~~l~p~i~~ 132 (211)
++... ...+|.|.+|+.. .+. .-+..|+.+|.+++..-+. + .+. .-.+|.+..
T Consensus 535 ~~~f~~~~~-~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 535 GLIFKKYSA-LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HHHSSSSCS-TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHcCCCcc-ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 22111 2456777787772 221 1277899999999886532 1 223 247899999
Q ss_pred hhcCCCchHHHhHHhHHHhhccCCC---hHH------H-HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 133 LAAGEWFTARVSACGLFHIAYPSAP---DIL------K-TELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 133 l~~d~~~~vR~~~a~~l~~l~~~~~---~~~------~-~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
+..+++..+|.+++.++..++..-. ..+ . ..=+++++.|++.++..+|++|+..|..+....
T Consensus 614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999988865322 121 0 112678899999999999999999998885433
No 80
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.18 E-value=4.8e-06 Score=78.06 Aligned_cols=139 Identities=4% Similarity=-0.032 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhccccccCccccccccchHHhhhccc-----hhhHHHHHHHHHHHHHHhhcChhH--HHHhhHHHHHHhh
Q 039154 62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV-----EETCMRDKAVESLCRIGSQMRESD--LVDWFIPLVKRLA 134 (211)
Q Consensus 62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d-----~~~~VR~~a~~~l~~l~~~l~~~~--~~~~l~p~i~~l~ 134 (211)
..|+++++.+..++..+| +.....+++.+...+.. .+|..|++|+.++..+++.+..+. .-..+++.+..+.
T Consensus 436 ~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~ 514 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIP 514 (971)
T ss_dssp HHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcC
Confidence 478899999998888776 55666777777666554 578899999999999998887643 2234566666665
Q ss_pred c-CCCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHHHHHHHh
Q 039154 135 A-GEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDIMSIFED 209 (211)
Q Consensus 135 ~-d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~~~ 209 (211)
. |+...||..++..++.++..++.. +...+++.+++.+ | +.|+..|+..+..+++.++. .+.|++..
T Consensus 515 ~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~-----~l~p~~~~ 584 (971)
T 2x1g_F 515 YEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQL-----QLKPYADP 584 (971)
T ss_dssp TTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHH-----HHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHH-----hccccHHH
Confidence 3 567889999999999988776643 5667777777777 5 88999999999999976543 45555543
No 81
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.16 E-value=1.2e-05 Score=75.39 Aligned_cols=172 Identities=13% Similarity=0.011 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCC-----ChHHHHHHHHHHHhccccccCccc--cccccchHHhhhc
Q 039154 24 QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NND-----DDDEVLLAMAEELGVFIPYVGGVE--HAHVLLPPLETLC 95 (211)
Q Consensus 24 ~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D-----~~~~VR~~~a~~L~~l~~~ig~~~--~~~~llp~l~~l~ 95 (211)
..|..+...+..++..+| +.+-..+.+++.+ +.. .++..|.++.-.++.+++.+.... ....+++.+..+.
T Consensus 436 ~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~ 514 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIP 514 (971)
T ss_dssp HHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcC
Confidence 457777788888888887 5555677777766 433 577889999999999988655322 2233455555555
Q ss_pred c-chhhHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHHHHHHHH
Q 039154 96 T-VEETCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQ 170 (211)
Q Consensus 96 ~-d~~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~ 170 (211)
. |.++.||..++..++.+++.+... ..-..++|.+.+.. | .+|+..+|..+..+++.++.. +.+.++..+.+
T Consensus 515 ~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~ 591 (971)
T 2x1g_F 515 YEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHA 591 (971)
T ss_dssp TTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3 557899999999999999988743 23344556555444 3 689999999999999887765 55667777777
Q ss_pred hcCC--CCHHHHHHHHHhhHHHHhhhCchhh
Q 039154 171 LCQD--DMPMVRRSAASNLRKFAATVEPAHL 199 (211)
Q Consensus 171 L~~D--~~~~VR~aaa~~l~~~~~~~~~~~~ 199 (211)
+++. -...+|..+.++++.++..++++..
T Consensus 592 ~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 592 SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred HHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 7776 4589999999999999998875433
No 82
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.16 E-value=9e-05 Score=69.52 Aligned_cols=195 Identities=13% Similarity=0.158 Sum_probs=148.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcc-hhhc---hhhhhhh-cCCChHHHHHHHHHHHhccccccCcccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEER-TPKE---LIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAH 85 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~-~~~~---L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~ 85 (211)
++.+++.+++.... ..|+..+..++...|... ..-. ++|.+.. +.|....||.++..+...+++.+.+... .
T Consensus 56 ~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~ 132 (986)
T 2iw3_A 56 FGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-K 132 (986)
T ss_dssp HHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-H
T ss_pred HHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-H
Confidence 55666666665444 778899999997776632 2222 3466667 7899999999999999999998887665 6
Q ss_pred ccchHHhhhccch-hhHHHHHHHHHHHHHHhhcChhHHH---HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH--
Q 039154 86 VLLPPLETLCTVE-ETCMRDKAVESLCRIGSQMRESDLV---DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-- 159 (211)
Q Consensus 86 ~llp~l~~l~~d~-~~~VR~~a~~~l~~l~~~l~~~~~~---~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-- 159 (211)
.++|.+...++.. .|..+..|.+.+..+++.. ++.+. ..++|.+.....|-...|..++-..+.++|..+++.
T Consensus 133 ~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~ 211 (986)
T 2iw3_A 133 ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI 211 (986)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch
Confidence 7778776666655 5999999999999999987 45443 458899999989988888888888877777766631
Q ss_pred ------------------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch----hh
Q 039154 160 ------------------------------------LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA----HL 199 (211)
Q Consensus 160 ------------------------------------~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~----~~ 199 (211)
...-+.|++.+-+++++-.+++-++--+.++++.++-. -+
T Consensus 212 ~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f 291 (986)
T 2iw3_A 212 ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF 291 (986)
T ss_dssp GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh
Confidence 23457899999999999999999999999999998643 44
Q ss_pred HHHHHHHHHh
Q 039154 200 KTDIMSIFED 209 (211)
Q Consensus 200 ~~~llp~~~~ 209 (211)
..+|+|-+++
T Consensus 292 ~~~l~p~~~~ 301 (986)
T 2iw3_A 292 LGKLLPGLKS 301 (986)
T ss_dssp HTTTHHHHHH
T ss_pred hhhhhhHHHH
Confidence 4556666654
No 83
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.09 E-value=0.00013 Score=63.07 Aligned_cols=104 Identities=15% Similarity=0.048 Sum_probs=72.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhch-----hhhhhh-cC-CChHHHHHHHHHHHhccccccCc-cc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKEL-----IPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGG-VE 82 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L-----~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~-~~ 82 (211)
+..|++.|+++++..+..|+..|..++. +.+..+..+ +|.+.+ +. ..+++++..++..|.+++..-.. ..
T Consensus 46 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~--~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~ 123 (457)
T 1xm9_A 46 ICKLVDLLRSPNQNVQQAAAGALRNLVF--RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123 (457)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHH
Confidence 6788899999999999999999999985 323333333 688888 76 77899999999999999874110 10
Q ss_pred cccccchHHhhhcc--------ch--------hhHHHHHHHHHHHHHHhh
Q 039154 83 HAHVLLPPLETLCT--------VE--------ETCMRDKAVESLCRIGSQ 116 (211)
Q Consensus 83 ~~~~llp~l~~l~~--------d~--------~~~VR~~a~~~l~~l~~~ 116 (211)
..+-.+|.|..++. +. +..|+..|+.+|..++..
T Consensus 124 i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~ 173 (457)
T 1xm9_A 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173 (457)
T ss_dssp HHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS
T ss_pred HHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC
Confidence 11245677777772 22 234555777777777654
No 84
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.02 E-value=6.9e-06 Score=72.05 Aligned_cols=160 Identities=17% Similarity=0.150 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhH
Q 039154 23 IQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC 101 (211)
Q Consensus 23 ~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~ 101 (211)
--+|..|++.|+.+ ..++++ -.++-.+.. .....++||....--|..+.+.+.. ...++|.+...++|.++.
T Consensus 242 APVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DDD 314 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDED 314 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSHH
T ss_pred eehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCcccH
Confidence 35799999999999 888877 233333334 6778899999988888877554432 566778888888999999
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-HHHHHHHHHHHhcCCCCHHHH
Q 039154 102 MRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVR 180 (211)
Q Consensus 102 VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-~~~~l~~~~~~L~~D~~~~VR 180 (211)
||..|+.+|..++..-.-+.+-+.+...+..+ |+--..-.++-.++.+++..-... ....++|.+..++..+...||
T Consensus 315 VRAVAAetLiPIA~p~~l~~LL~iLWd~L~~L--DDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR 392 (800)
T 3oc3_A 315 IKLLSAELLCHFPITDSLDLVLEKCWKNIESE--ELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVR 392 (800)
T ss_dssp HHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTC--CSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHH
T ss_pred HHHHHHHHhhhhcchhhHHHHHHHHHHHhhhh--cccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHH
Confidence 99999999999983223345556677777766 333333334444444443321111 123788889999999999999
Q ss_pred HHHHHhhHHHH
Q 039154 181 RSAASNLRKFA 191 (211)
Q Consensus 181 ~aaa~~l~~~~ 191 (211)
+++.+.+..+.
T Consensus 393 ~AVL~TL~tfL 403 (800)
T 3oc3_A 393 TSILNMVKNLS 403 (800)
T ss_dssp HHHHHHTTTCC
T ss_pred HHHHHHHHHHH
Confidence 99999886654
No 85
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.00 E-value=9.9e-06 Score=76.80 Aligned_cols=135 Identities=9% Similarity=-0.028 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhccccccCccccccccchHHhhhccc--hhhHHHHHHHHHHHHHHhhcChhH---HHHhhHHHHHHhhc-
Q 039154 62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV--EETCMRDKAVESLCRIGSQMRESD---LVDWFIPLVKRLAA- 135 (211)
Q Consensus 62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d--~~~~VR~~a~~~l~~l~~~l~~~~---~~~~l~p~i~~l~~- 135 (211)
..|+++++.|..++. +++......+++.+.+.++. .+|..|++|+.+++.+++.++... ....+++.+..+++
T Consensus 428 ~~~~~~~~~L~~l~~-~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~ 506 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVK 506 (1049)
T ss_dssp HHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhh
Confidence 468888889988885 55666777888888777753 578999999999999998877652 24556777777654
Q ss_pred ----CCCchHHHhHHhHHHhhccCCCh--HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 136 ----GEWFTARVSACGLFHIAYPSAPD--ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 136 ----d~~~~vR~~~a~~l~~l~~~~~~--~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
|+...+|..++..++.++..+.. ++...+++.++..+.|+.+.||..|+.++..++..++..
T Consensus 507 ~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~ 574 (1049)
T 3m1i_C 507 KRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH 574 (1049)
T ss_dssp SCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34556776788888877654433 366778888888999999999999999999999987653
No 86
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.98 E-value=0.00011 Score=61.57 Aligned_cols=170 Identities=12% Similarity=0.062 Sum_probs=112.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHh
Q 039154 14 LTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE 92 (211)
Q Consensus 14 l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~ 92 (211)
.++.+.|+|...|...--.+..+++. ++... ...+.+.+ ++|.++.+|..+...|+.+.. ++..+.+.+.+.
T Consensus 73 v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~~~lk 145 (355)
T 3tjz_B 73 MTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAIERYMK 145 (355)
T ss_dssp HHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHHHHHH
Confidence 35688899999988776666666554 33332 55577777 999999999999999999654 667889999999
Q ss_pred hhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC---------------
Q 039154 93 TLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP--------------- 157 (211)
Q Consensus 93 ~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~--------------- 157 (211)
+.+.|.++.||.+|+-+..++...- ++.++ .+++-+..+..|++..|-+++...+..+...-+
T Consensus 146 ~~L~d~~pyVRk~A~l~~~kL~~~~-pe~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l 223 (355)
T 3tjz_B 146 QAIVDKVPSVSSSALVSSLHLLKCS-FDVVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGL 223 (355)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTTTC-HHHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHhccC-HHHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCC
Confidence 9999999999999999999988664 44443 466777777777776555555444444432110
Q ss_pred -----------------h----HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 158 -----------------D----ILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 158 -----------------~----~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
. +....+.+.+...++...+.|--.|++.+-.+-.
T Consensus 224 ~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 224 KSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp SCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred cChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 0 0123455555666666667777777766655433
No 87
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.97 E-value=4.4e-05 Score=69.71 Aligned_cols=183 Identities=15% Similarity=0.111 Sum_probs=126.5
Q ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHHHHHHh------CCcchhhchhhhhhh-cCC-Ch------------H-HHHHH
Q 039154 11 IAVLTDELKNDDIQ---LRLNSIRRLSTIARAL------GEERTPKELIPFLSA-NND-DD------------D-EVLLA 66 (211)
Q Consensus 11 l~~l~~~l~s~~~~---~R~~a~~~l~~ia~~l------g~~~~~~~L~p~l~~-~~D-~~------------~-~VR~~ 66 (211)
+..++..+.+.... .|..|++.|..++..- |.... ...+|.+.+ +.. .. + .-+..
T Consensus 500 l~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~-~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~fe 578 (778)
T 3opb_A 500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSA-LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYE 578 (778)
T ss_dssp HHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCS-TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHH
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcc-ccchHHHHHHcCCCCCcccccccccccccHHHHHH
Confidence 56678888777654 7889999998887322 21111 245555555 441 11 1 23778
Q ss_pred HHHHHhccccccCc--cc----ccc--ccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--hHHHH-------hhHHH
Q 039154 67 MAEELGVFIPYVGG--VE----HAH--VLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--SDLVD-------WFIPL 129 (211)
Q Consensus 67 ~a~~L~~l~~~ig~--~~----~~~--~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~~~~~-------~l~p~ 129 (211)
++.+|.+++..=+. ++ ... ..+|.+.+++.+++..||.+|++.+..+...-.. ..+.+ .=++.
T Consensus 579 AL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~l 658 (778)
T 3opb_A 579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNI 658 (778)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHH
Confidence 88999999884311 11 222 3678999999999999999999999999863221 12211 12677
Q ss_pred HHHhhcCCCchHHHhHHhHHHhhccCCCh---H-H-HHHHHHHHHHhcCC--CCHHHHHHHHHhhHHHHhhh
Q 039154 130 VKRLAAGEWFTARVSACGLFHIAYPSAPD---I-L-KTELRSIYTQLCQD--DMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~---~-~-~~~l~~~~~~L~~D--~~~~VR~aaa~~l~~~~~~~ 194 (211)
+..|+..+...+|.+++..+..+....+. . . ....++.++.+|+| ++.++|.-++..+.+++...
T Consensus 659 LV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 659 LVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999888887543332 1 2 24688899999999 89999999999999999843
No 88
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.96 E-value=0.0006 Score=63.67 Aligned_cols=175 Identities=10% Similarity=0.040 Sum_probs=116.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCCcc--hhhchhhhhhhcCCChHHHHHHHHHHHhccccccCc-cccccccchHHhhhc
Q 039154 19 KNDDIQLRLNSIRRLSTIARALGEER--TPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGG-VEHAHVLLPPLETLC 95 (211)
Q Consensus 19 ~s~~~~~R~~a~~~l~~ia~~lg~~~--~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~-~~~~~~llp~l~~l~ 95 (211)
.+.+...|..++..++.++..+..+. .-..+++.+.++.++++.||.+++..++.+.+.++. ......+++.+...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l 538 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL 538 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 56788889999999999987766532 223456666565557889999999999999987653 244556666666666
Q ss_pred cchhhHHHHHHHHHHHHHHhhcChhH--HHHhhHHHHHHhhcC--CCchHHHhHHhHHHhhccCCC-hH---HHHHHHHH
Q 039154 96 TVEETCMRDKAVESLCRIGSQMRESD--LVDWFIPLVKRLAAG--EWFTARVSACGLFHIAYPSAP-DI---LKTELRSI 167 (211)
Q Consensus 96 ~d~~~~VR~~a~~~l~~l~~~l~~~~--~~~~l~p~i~~l~~d--~~~~vR~~~a~~l~~l~~~~~-~~---~~~~l~~~ 167 (211)
.+ +.||..|+.++.++++..+..- ....++..+..+... -....|..+.+.++.++...+ .+ +...+++.
T Consensus 539 ~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~ 616 (963)
T 2x19_B 539 GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISP 616 (963)
T ss_dssp TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 55 7899999999999998765431 123344444444443 245788888899999888776 32 33444444
Q ss_pred HHHhc----C-CCCHHHHH---HHHHhhHHHHhhhC
Q 039154 168 YTQLC----Q-DDMPMVRR---SAASNLRKFAATVE 195 (211)
Q Consensus 168 ~~~L~----~-D~~~~VR~---aaa~~l~~~~~~~~ 195 (211)
+...+ + +.++..|. .+...++.+++.++
T Consensus 617 l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 617 YIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 44332 2 23566665 45556667777766
No 89
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.94 E-value=0.00048 Score=60.68 Aligned_cols=150 Identities=13% Similarity=0.003 Sum_probs=95.6
Q ss_pred hhhhhhh-cCCChHHHHHHHHHHHhccccccCcc------cc---ccccchH-----Hhhhccchh-hHHHHHHHHHHHH
Q 039154 49 LIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGV------EH---AHVLLPP-----LETLCTVEE-TCMRDKAVESLCR 112 (211)
Q Consensus 49 L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~------~~---~~~llp~-----l~~l~~d~~-~~VR~~a~~~l~~ 112 (211)
+...+.. +-|+.+|+|+.||-.|..+.+.-|.. .. .-.++-+ |-.+.+|.- .-||+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 4455555 66777777777777777666655421 00 0011111 112334432 4589999999999
Q ss_pred HHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 113 IGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 113 l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
+ ..++.+ .+.+..++ +....+.|.||.+.--.+--+...+.. .+.+++.++..++|++-.||..||..|-.++
T Consensus 255 L-~hLp~e--~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA- 327 (800)
T 3oc3_A 255 I-YPLIGP--NDIIEQLV-GFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP- 327 (800)
T ss_dssp H-TTTSCS--CCHHHHHT-TGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-
T ss_pred H-HhCChh--HHHHHHHH-hhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-
Confidence 9 888877 23333333 455778899999876666555333322 5788999999999999999999999999888
Q ss_pred hhCchhhHHHHHHHHH
Q 039154 193 TVEPAHLKTDIMSIFE 208 (211)
Q Consensus 193 ~~~~~~~~~~llp~~~ 208 (211)
.++.+ ..++-.+|
T Consensus 328 --~p~~l-~~LL~iLW 340 (800)
T 3oc3_A 328 --ITDSL-DLVLEKCW 340 (800)
T ss_dssp --CSSTH-HHHHHHHH
T ss_pred --chhhH-HHHHHHHH
Confidence 44443 34444443
No 90
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.89 E-value=2.5e-05 Score=73.70 Aligned_cols=145 Identities=10% Similarity=-0.012 Sum_probs=113.6
Q ss_pred HHHHHHHHHHhccccccCcccccc----ccchHHhhhc---cchhhHHHHHHHHHHHHHHhhcChhH--------HHHhh
Q 039154 62 EVLLAMAEELGVFIPYVGGVEHAH----VLLPPLETLC---TVEETCMRDKAVESLCRIGSQMRESD--------LVDWF 126 (211)
Q Consensus 62 ~VR~~~a~~L~~l~~~ig~~~~~~----~llp~l~~l~---~d~~~~VR~~a~~~l~~l~~~l~~~~--------~~~~l 126 (211)
+.|+.++ .+-+....+|++...+ .+.+.+.+.+ ...+|..+++|+.++..+++.+.... ....+
T Consensus 413 e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l 491 (980)
T 3ibv_A 413 EMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVL 491 (980)
T ss_dssp HHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHH
T ss_pred HHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHH
Confidence 4888888 7777777789888777 7777776655 34579999999999999999876422 22357
Q ss_pred HHHHHHhhc-----CCCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHH--hcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 127 IPLVKRLAA-----GEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQ--LCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 127 ~p~i~~l~~-----d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~--L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
++++.++.+ ++...||..++..++..+.-+... +...+++.|+. .+.|+.+.||.+|+..+..+++.+.+.
T Consensus 492 ~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~ 571 (980)
T 3ibv_A 492 SQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ 571 (980)
T ss_dssp HHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH
Confidence 788888755 788899999999999988877544 67788888888 888999999999999999999998864
Q ss_pred hhHHHHHHHHH
Q 039154 198 HLKTDIMSIFE 208 (211)
Q Consensus 198 ~~~~~llp~~~ 208 (211)
. ..++-+++.
T Consensus 572 L-~~~~~~il~ 581 (980)
T 3ibv_A 572 V-VNYTESSLA 581 (980)
T ss_dssp C-SSSHHHHHH
T ss_pred h-hhHHHHHHH
Confidence 2 234444443
No 91
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.71 E-value=0.00051 Score=61.20 Aligned_cols=143 Identities=13% Similarity=0.029 Sum_probs=105.9
Q ss_pred hhhhhh-cC-CChHHHHHHHHHHHhccccccCc--cc-----cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh-
Q 039154 50 IPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGG--VE-----HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE- 119 (211)
Q Consensus 50 ~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~--~~-----~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~- 119 (211)
++.+.. ++ ..++.++..++.+|.+++.--+. .. .....+|.|..|+...+..|+..|+.+|..++..-..
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~ 389 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK 389 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH
Confidence 344444 43 35799999999999998651110 11 1235589999999999999999999999999876433
Q ss_pred hHHHHhhHHHHHHhhcCC--------CchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 039154 120 SDLVDWFIPLVKRLAAGE--------WFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDD--MPMVRRSAAS 185 (211)
Q Consensus 120 ~~~~~~l~p~i~~l~~d~--------~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~--~~~VR~aaa~ 185 (211)
+.+....+|.+.++..+. +..++..+|..++.+...-... .....+|.+.+|+++. .+.++++|+.
T Consensus 390 ~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~ 469 (584)
T 3l6x_A 390 ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAAL 469 (584)
T ss_dssp HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHH
Confidence 455667888888877665 3467888888888776442222 2446789999999986 8999999999
Q ss_pred hhHHHHh
Q 039154 186 NLRKFAA 192 (211)
Q Consensus 186 ~l~~~~~ 192 (211)
.|..+..
T Consensus 470 vL~nl~~ 476 (584)
T 3l6x_A 470 VLQTIWG 476 (584)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9999874
No 92
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.67 E-value=0.00044 Score=65.49 Aligned_cols=172 Identities=9% Similarity=0.006 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cC--CChHHHHHHHHHHHhccccccCccc---cccccchHHhhhcc-
Q 039154 24 QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NN--DDDDEVLLAMAEELGVFIPYVGGVE---HAHVLLPPLETLCT- 96 (211)
Q Consensus 24 ~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~--D~~~~VR~~~a~~L~~l~~~ig~~~---~~~~llp~l~~l~~- 96 (211)
+.|..+...|..++ .+++..+-..+.+.+.+ +. ..++..|.++.-.+|.+++.+++.. ....+++.+..+..
T Consensus 428 ~~~~~~~~~L~~l~-~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~ 506 (1049)
T 3m1i_C 428 QLYKSEREVLVYLT-HLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVK 506 (1049)
T ss_dssp HHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhh
Confidence 45666667777776 45555666777777777 43 4678899999999999987666542 13444555555443
Q ss_pred ----chhhHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----------H
Q 039154 97 ----VEETCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----------L 160 (211)
Q Consensus 97 ----d~~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----------~ 160 (211)
|+.+.||..++..++++++-+... ..-..+++.+....+|++.+||..||..|..++...+.. +
T Consensus 507 ~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~ 586 (1049)
T 3m1i_C 507 KRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF 586 (1049)
T ss_dssp SCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcH
Confidence 456777777888888887765442 334556676666778888999999999999998876543 3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCc
Q 039154 161 KTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 161 ~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
.+.++..+..+.++-...-+..+.++++.++...+.
T Consensus 587 ~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 587 IQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp HHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence 566777777778887777788899999999988874
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.53 E-value=0.0057 Score=48.04 Aligned_cols=170 Identities=11% Similarity=0.023 Sum_probs=128.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc---ccccc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG---VEHAH 85 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~---~~~~~ 85 (211)
-...+.+.++|=+...-.+.++ +. ++-+-.+.+ +.|+++.|+..+-..++.+.+-..+ ....+
T Consensus 8 ~~~~lre~L~sWkiK~a~ela~---------~~----e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e 74 (265)
T 3b2a_A 8 SKTELRELVLSWQILDAVSLAL---------ED----KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE 74 (265)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHH---------HC----HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred cHHHHHHHHHHhhHHHHHHHHH---------hc----hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 3556666666655433322211 11 224555666 7899999999999999988875322 23456
Q ss_pred ccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHH
Q 039154 86 VLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 164 (211)
Q Consensus 86 ~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l 164 (211)
.++|-+..++.++++.|-..|++++..+.+..+.. .....+...+..+.++++--.|..+++.++.+ +.... ...+
T Consensus 75 ~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~--~~~V 151 (265)
T 3b2a_A 75 RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLED--SKLV 151 (265)
T ss_dssp HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCC--CHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccccc--hHHH
Confidence 78899999999999999999999999999987653 44566777788888888888999999999999 33322 3578
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 165 RSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 165 ~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
.....+|+...++.|+.++...+-+++..-+
T Consensus 152 ~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 152 RTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 8888899999999999999999999988654
No 94
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.52 E-value=0.003 Score=47.98 Aligned_cols=174 Identities=15% Similarity=0.136 Sum_probs=114.7
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 11 IAVLTDEL-KNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 11 l~~l~~~l-~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
+..++--+ ||+...--++..+.++.+|+. .|+. ...++|.+.. ..-.++..|..++-.|+.++..- +.....+.
T Consensus 71 ~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~-v~~vVp~lfanyrigd~kikIn~~yaLeeIaran--P~l~~~v~ 146 (253)
T 2db0_A 71 LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPEL-VKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN--PMLMASIV 146 (253)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHH-HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC--HHHHHHHH
T ss_pred HHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHH-HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC--hHHHHHHH
Confidence 44455443 466666666677777777643 3444 3567788777 65568888888888888887732 23344455
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~ 168 (211)
--+..++++.+..=|..|.+=+..++..- .+. -.=.+|.+..|..|...-||.++.+.+..++..-++ .++-+...
T Consensus 147 rdi~smltskd~~Dkl~aLnFi~alGen~-~~y-v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~k- 222 (253)
T 2db0_A 147 RDFMSMLSSKNREDKLTALNFIEAMGENS-FKY-VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKR- 222 (253)
T ss_dssp HHHHHHTSCSSHHHHHHHHHHHHTCCTTT-HHH-HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHH-
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhccC-ccc-cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHH-
Confidence 55566667777666777776666666552 222 233567777788888888888888888888776555 44444444
Q ss_pred HHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 169 TQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 169 ~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
+.=++|++..|.+..-..|+.+.-
T Consensus 223 l~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 223 LEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHH
Confidence 555688888888888888887764
No 95
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.52 E-value=0.00081 Score=59.91 Aligned_cols=150 Identities=14% Similarity=-0.044 Sum_probs=105.8
Q ss_pred CCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc-----ccccchHHhhhccchhhHHHHHHHHHHHHHH
Q 039154 41 GEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-----AHVLLPPLETLCTVEETCMRDKAVESLCRIG 114 (211)
Q Consensus 41 g~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-----~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~ 114 (211)
+...++..-+|.+.+ +...+++++..++..|.+++. +.+.. ..-.+|.|..+++..+..||+.|+.+|..|+
T Consensus 41 ~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~--~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 41 PPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCY--RNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS 118 (584)
T ss_dssp CCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred CCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 345677778888888 888889999999999988874 22222 2234689999999999999999999999998
Q ss_pred hhcCh---hH-HHHhhHHHHHHhhcC-CCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhc---------------
Q 039154 115 SQMRE---SD-LVDWFIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLC--------------- 172 (211)
Q Consensus 115 ~~l~~---~~-~~~~l~p~i~~l~~d-~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~--------------- 172 (211)
..-+. .. ...-.+|.+.++..+ ....++..++..+-.++..-... ....-+|.+++++
T Consensus 119 ~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~ 198 (584)
T 3l6x_A 119 FGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDC 198 (584)
T ss_dssp SSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC-------
T ss_pred ccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccc
Confidence 63222 22 223356666666664 56788888888888887632111 2234567777765
Q ss_pred ---CCCCHHHHHHHHHhhHHHHh
Q 039154 173 ---QDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 173 ---~D~~~~VR~aaa~~l~~~~~ 192 (211)
.-++..|+..|+..|.+++.
T Consensus 199 k~~~~~d~~V~~nAa~~L~NLs~ 221 (584)
T 3l6x_A 199 KPRHIEWESVLTNTAGCLRNVSS 221 (584)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTS
T ss_pred cccccccHHHHHHHHHHHHHHhc
Confidence 12357999999999888875
No 96
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.49 E-value=0.0014 Score=56.54 Aligned_cols=190 Identities=12% Similarity=0.125 Sum_probs=101.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp 89 (211)
++.+++..+++|.++|..|++.|+.+++. .....+.-.+.+ ++-+++..+..+-++|-.+.+ .. -...+-.
T Consensus 67 i~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk-~D---pk~tl~~ 138 (507)
T 3u0r_A 67 INAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFK-MD---AKGTLGG 138 (507)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HC---HHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHh-cC---hHHHHHH
Confidence 67778888888888888888888877755 224555566666 665665555555555555444 11 1223333
Q ss_pred HHhhhccchhhHHHHHHHHHHHHHHhhcCh----hHHHHhhHHHHHHhhcCCCc--------------------------
Q 039154 90 PLETLCTVEETCMRDKAVESLCRIGSQMRE----SDLVDWFIPLVKRLAAGEWF-------------------------- 139 (211)
Q Consensus 90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~----~~~~~~l~p~i~~l~~d~~~-------------------------- 139 (211)
++.++.+. ++.||+.+++=+..-...++. ++.++++...+++..+|.+-
T Consensus 139 lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv 217 (507)
T 3u0r_A 139 LFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLV 217 (507)
T ss_dssp HHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHH
T ss_pred HHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 44444443 356777766655544444333 22333333333333332211
Q ss_pred ----------------------hHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcC-CCCHHHHHHHHHhhHHHH
Q 039154 140 ----------------------TARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQ-DDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 140 ----------------------~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~-D~~~~VR~aaa~~l~~~~ 191 (211)
+...++-..++-+....+.. +-++++|.+-.+-. ++....+--..+.+.+++
T Consensus 218 ~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s 297 (507)
T 3u0r_A 218 ELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMS 297 (507)
T ss_dssp HHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHc
Confidence 12222233344444444443 23445554444333 223346888999999999
Q ss_pred hhhC-chhhHHHHHHHHHh
Q 039154 192 ATVE-PAHLKTDIMSIFED 209 (211)
Q Consensus 192 ~~~~-~~~~~~~llp~~~~ 209 (211)
...| .+...+.+-++|+.
T Consensus 298 ~~~~~~e~a~~~l~~iy~~ 316 (507)
T 3u0r_A 298 SFCGDMEKLETNLRKLFDK 316 (507)
T ss_dssp TTCCCCTTHHHHHHHHHHH
T ss_pred cCCCccchHHHHHHHHHHH
Confidence 9999 45555555555544
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.45 E-value=0.001 Score=63.11 Aligned_cols=170 Identities=8% Similarity=0.006 Sum_probs=122.5
Q ss_pred HHHHHHHHHhCCcchhhchhhhhhh-cCC--ChHHHHHHHHHHHhccccccCcc---ccccccchHHhhhcc-----chh
Q 039154 31 RRLSTIARALGEERTPKELIPFLSA-NND--DDDEVLLAMAEELGVFIPYVGGV---EHAHVLLPPLETLCT-----VEE 99 (211)
Q Consensus 31 ~~l~~ia~~lg~~~~~~~L~p~l~~-~~D--~~~~VR~~~a~~L~~l~~~ig~~---~~~~~llp~l~~l~~-----d~~ 99 (211)
.-|..++...| ..+...+++.+.+ +.. .++..|.+++-++|.+++.+.++ .....++|.|..+++ |+.
T Consensus 435 d~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k 513 (1023)
T 4hat_C 435 EVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK 513 (1023)
T ss_dssp HHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch
Confidence 33444444444 4677778888876 443 67999999999999999866543 233456677777776 466
Q ss_pred hHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----------HHHHHHHH
Q 039154 100 TCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----------LKTELRSI 167 (211)
Q Consensus 100 ~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----------~~~~l~~~ 167 (211)
..||..++..++++++-+... ..-..+++.+.+...|+..+|..+||..|..++..++.. +...++..
T Consensus 514 ~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~ 593 (1023)
T 4hat_C 514 AVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRD 593 (1023)
T ss_dssp HHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHH
Confidence 778888999999988876432 223334444444556777889999999999998876643 45667777
Q ss_pred HHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHH
Q 039154 168 YTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKT 201 (211)
Q Consensus 168 ~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~ 201 (211)
+.+...+-.+.-+..+..+++.+++..+.+....
T Consensus 594 l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~ 627 (1023)
T 4hat_C 594 IQKTTADLQPQQVHTFYKACGIIISEERSVAERN 627 (1023)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHH
Confidence 7787778889999999999999999998765333
No 98
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.39 E-value=0.00033 Score=66.38 Aligned_cols=129 Identities=9% Similarity=-0.028 Sum_probs=100.7
Q ss_pred HHHhccccccCccccccccchHHhhhccc--hhhHHHHHHHHHHHHHHhhcChhH---HHHhhHHHHHHhhc-----CCC
Q 039154 69 EELGVFIPYVGGVEHAHVLLPPLETLCTV--EETCMRDKAVESLCRIGSQMRESD---LVDWFIPLVKRLAA-----GEW 138 (211)
Q Consensus 69 ~~L~~l~~~ig~~~~~~~llp~l~~l~~d--~~~~VR~~a~~~l~~l~~~l~~~~---~~~~l~p~i~~l~~-----d~~ 138 (211)
+.|..+.. +++.+..+.+++.+.+.+.. .+|..|++++-+++.+++....+. .-..++|.+.++.+ |+.
T Consensus 435 d~L~~l~~-l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k 513 (1023)
T 4hat_C 435 EVLVYLTH-LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK 513 (1023)
T ss_dssp HHHHHHHH-HCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHhc-cCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch
Confidence 56666555 44456777788888776654 469999999999999999988763 33567888888886 567
Q ss_pred chHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh
Q 039154 139 FTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH 198 (211)
Q Consensus 139 ~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~ 198 (211)
..||..++..++..++-+... +...+++.+++.+.|+.+.|..+|+.++..++..++...
T Consensus 514 ~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l 575 (1023)
T 4hat_C 514 AVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHF 575 (1023)
T ss_dssp HHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999887765432 566777777888889999999999999999999887543
No 99
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.37 E-value=0.00025 Score=64.36 Aligned_cols=146 Identities=12% Similarity=0.033 Sum_probs=92.8
Q ss_pred hhchhhhhhhcCCChHHHHHHHHHHHhccccccCccc-----cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh
Q 039154 46 PKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVE-----HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120 (211)
Q Consensus 46 ~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~-----~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~ 120 (211)
.+.++|++..++..++.+|..++.+|.+++. +.+. ....+.+++..++.|.+..||.+|+.+|..++...+.+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 3568898877888888899999999999885 2221 12234466788889999999999999999998887776
Q ss_pred HHHH----hhHHHHHHhhcCCC---------------------chHHHhHHhHHHhhccCCChH----HHHHHHHHHHHh
Q 039154 121 DLVD----WFIPLVKRLAAGEW---------------------FTARVSACGLFHIAYPSAPDI----LKTELRSIYTQL 171 (211)
Q Consensus 121 ~~~~----~l~p~i~~l~~d~~---------------------~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L 171 (211)
.+.. -++|.+..+.+... |.+-..++.++..++..-+.. .....++.++.+
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 4432 24554444432100 222223445555555443322 123445555555
Q ss_pred cCC---CCHHHHHHHHHhhHHHHhh
Q 039154 172 CQD---DMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 172 ~~D---~~~~VR~aaa~~l~~~~~~ 193 (211)
+.+ ....|+.+|++.|..+..-
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhcc
Confidence 532 3368999999999887663
No 100
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.33 E-value=0.0019 Score=50.79 Aligned_cols=143 Identities=10% Similarity=-0.060 Sum_probs=74.4
Q ss_pred hhhhhh-cCCChH--HHHHHHHHHHhccccccCc---cccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcCh--hH
Q 039154 50 IPFLSA-NNDDDD--EVLLAMAEELGVFIPYVGG---VEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRE--SD 121 (211)
Q Consensus 50 ~p~l~~-~~D~~~--~VR~~~a~~L~~l~~~ig~---~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~--~~ 121 (211)
+|.+.+ +..+++ +++..++..+..++..-.. .-...-.+|.|..+++.++..+|+.|+.+|..++..-+. ..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 444444 333333 6666666666655531100 001112356677777766777777777777777653111 11
Q ss_pred -HHHhhHHHHHHhhc-CCCchHHHhHHhHHHhhccCCChH--HHHHHHHHHHHhcC-------C---------CCHHHHH
Q 039154 122 -LVDWFIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQ-------D---------DMPMVRR 181 (211)
Q Consensus 122 -~~~~l~p~i~~l~~-d~~~~vR~~~a~~l~~l~~~~~~~--~~~~l~~~~~~L~~-------D---------~~~~VR~ 181 (211)
...--+|.+.++.. ...+.+|..++..+-.++..-... ....-+|.+..++. | .++.|+.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 12224555555554 456677777776666664322111 22233455555432 1 2567777
Q ss_pred HHHHhhHHHHh
Q 039154 182 SAASNLRKFAA 192 (211)
Q Consensus 182 aaa~~l~~~~~ 192 (211)
.++..|.+++.
T Consensus 170 na~~~L~nLss 180 (233)
T 3tt9_A 170 NVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 77777777765
No 101
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.95 E-value=0.0097 Score=56.18 Aligned_cols=170 Identities=12% Similarity=-0.014 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHhCCcchhh----chhhhhhh-cC---CChHHHHHHHHHHHhccccccCcc--------ccccccc
Q 039154 25 LRLNSIRRLSTIARALGEERTPK----ELIPFLSA-NN---DDDDEVLLAMAEELGVFIPYVGGV--------EHAHVLL 88 (211)
Q Consensus 25 ~R~~a~~~l~~ia~~lg~~~~~~----~L~p~l~~-~~---D~~~~VR~~~a~~L~~l~~~ig~~--------~~~~~ll 88 (211)
-|.... .+-.....+|++..-. .+.+.+.+ +. ..++..+.++.-.|+.+++.+... .....+.
T Consensus 414 ~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~ 492 (980)
T 3ibv_A 414 MRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLS 492 (980)
T ss_dssp HHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHH
T ss_pred HHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHH
Confidence 465555 6667778899887777 67777776 42 456889999999999988865421 2233466
Q ss_pred hHHhhhcc-----chhhHHHHHHHHHHHHHHhhcChhH-HHHhhHHHHHH--hhcCCCchHHHhHHhHHHhhccCCChH-
Q 039154 89 PPLETLCT-----VEETCMRDKAVESLCRIGSQMRESD-LVDWFIPLVKR--LAAGEWFTARVSACGLFHIAYPSAPDI- 159 (211)
Q Consensus 89 p~l~~l~~-----d~~~~VR~~a~~~l~~l~~~l~~~~-~~~~l~p~i~~--l~~d~~~~vR~~~a~~l~~l~~~~~~~- 159 (211)
+++..+++ +..+.||..+.+.+++.++-+.... .-..+++.+.. -..+++-+||..+|+.|..+++.+...
T Consensus 493 ~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L 572 (980)
T 3ibv_A 493 QILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQV 572 (980)
T ss_dssp HHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHh
Confidence 77777655 8889999999999999999986532 22233344433 444788899999999999998877765
Q ss_pred --HHHHHHHHHHHhcCC-------C--------------CHHHHHHHHHhhHHHHhhhC
Q 039154 160 --LKTELRSIYTQLCQD-------D--------------MPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 160 --~~~~l~~~~~~L~~D-------~--------------~~~VR~aaa~~l~~~~~~~~ 195 (211)
+...++..+..++.- + ...=+.-...+++.++...+
T Consensus 573 ~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 573 VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence 455667666666551 1 12235668889999998875
No 102
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.93 E-value=0.0075 Score=47.41 Aligned_cols=110 Identities=10% Similarity=-0.036 Sum_probs=83.7
Q ss_pred ccccchHHhhhccchhh--HHHHHHHHHHHHHHhhcCh--hH-HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCCh
Q 039154 84 AHVLLPPLETLCTVEET--CMRDKAVESLCRIGSQMRE--SD-LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~--~VR~~a~~~l~~l~~~l~~--~~-~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~ 158 (211)
...-+|.+.+++..+++ .++..|+..+..++..-+. .. +..-.+|.+.++..+++..++..++..+..++..-..
T Consensus 6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 34567888888887766 8998999999888865432 22 2334678888888889999999999999999764222
Q ss_pred H----HHHHHHHHHHHhcC-CCCHHHHHHHHHhhHHHHhh
Q 039154 159 I----LKTELRSIYTQLCQ-DDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 159 ~----~~~~l~~~~~~L~~-D~~~~VR~aaa~~l~~~~~~ 193 (211)
. ....-+|.++++++ ..++.+|+.++..|.+++..
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 1 23457899999998 47899999999999999764
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.88 E-value=0.0016 Score=61.54 Aligned_cols=121 Identities=13% Similarity=0.051 Sum_probs=83.8
Q ss_pred ccchHHhhhccchhh-HHHHH-HHHHHHHHHhhcChhHHHHhhHHHHHHhhc-CCCchHHHhHHhHHHhhc----cCCCh
Q 039154 86 VLLPPLETLCTVEET-CMRDK-AVESLCRIGSQMRESDLVDWFIPLVKRLAA-GEWFTARVSACGLFHIAY----PSAPD 158 (211)
Q Consensus 86 ~llp~l~~l~~d~~~-~VR~~-a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~-d~~~~vR~~~a~~l~~l~----~~~~~ 158 (211)
.++|.+..+.++++. +.... |...+..++...-+...-..++..+.+.+. +++| .|.++...+..++ -.++.
T Consensus 760 ~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~ 838 (997)
T 1vsy_5 760 YVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTE 838 (997)
T ss_dssp TTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCT
T ss_pred HHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCH
Confidence 377877777777765 55555 555666666555444445556666776666 7899 9998866654432 23445
Q ss_pred HHHHHHHHHHHHhcCCCC-HHHHHHHHHhhHHHHhhhCchhhHHHHHHHH
Q 039154 159 ILKTELRSIYTQLCQDDM-PMVRRSAASNLRKFAATVEPAHLKTDIMSIF 207 (211)
Q Consensus 159 ~~~~~l~~~~~~L~~D~~-~~VR~aaa~~l~~~~~~~~~~~~~~~llp~~ 207 (211)
+....+.....+++.|+. .+||..|+..|..+....++.....+++.-|
T Consensus 839 ~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f 888 (997)
T 1vsy_5 839 EEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERF 888 (997)
T ss_dssp THHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 556789999999999999 9999999999999997762422223455444
No 104
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.72 E-value=0.011 Score=56.17 Aligned_cols=175 Identities=15% Similarity=0.174 Sum_probs=114.9
Q ss_pred HHHHHHHhcCC----CHHHHHHHHHHHHHHHHHhCCc------chhhchhhhhhh-cCCChHHHHHHHHHHHhccccccC
Q 039154 11 IAVLTDELKND----DIQLRLNSIRRLSTIARALGEE------RTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVG 79 (211)
Q Consensus 11 l~~l~~~l~s~----~~~~R~~a~~~l~~ia~~lg~~------~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig 79 (211)
++.+.+.++++ ++..|..++-.++.+....-.. .....+..++.+ ....+.+-+..+.+.||++.
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g---- 468 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG---- 468 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC----
Confidence 66666666664 4567778888887777654322 112334444444 44556777788889999954
Q ss_pred ccccccccchHHhhh---ccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCC
Q 039154 80 GVEHAHVLLPPLETL---CTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (211)
Q Consensus 80 ~~~~~~~llp~l~~l---~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~ 156 (211)
-+.....|.|++... ..+....||.+|+.+|..+... .++.+.+.++|.+..-. ....+|.+|+..+-...+..
T Consensus 469 ~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-~p~~v~~il~~i~~n~~--e~~EvRiaA~~~Lm~t~P~~ 545 (1056)
T 1lsh_A 469 QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-DPRKVQEIVLPIFLNVA--IKSELRIRSCIVFFESKPSV 545 (1056)
T ss_dssp CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-CHHHHHHHHHHHHHCTT--SCHHHHHHHHHHHHHTCCCH
T ss_pred ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh-chHHHHHHHHHHhcCCC--CChHHHHHHHHHHHHHCcCH
Confidence 333333333333321 1122357999999999999854 45556667777665533 44579999999887654432
Q ss_pred ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 157 PDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 157 ~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
..+..+...+-.|++..|+....+.|..+++.-.|.
T Consensus 546 -----~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 546 -----ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE 581 (1056)
T ss_dssp -----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred -----HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence 356667777788899999999999999999987774
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.72 E-value=0.19 Score=43.38 Aligned_cols=155 Identities=14% Similarity=0.068 Sum_probs=102.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp 89 (211)
-..+++.-|. +...+.-|.+.++..-+..+. ..++-+..+.. |.|++..||+.+...|+.+++. +....+..
T Consensus 31 y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaD 103 (507)
T 3u0r_A 31 YQVILDGVKG-GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVAD 103 (507)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHH
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHH
Confidence 3456666655 466666688888888766653 44555666667 9999999999999999999984 56778889
Q ss_pred HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHh----h-ccCCChHHHHHH
Q 039154 90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHI----A-YPSAPDILKTEL 164 (211)
Q Consensus 90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~----l-~~~~~~~~~~~l 164 (211)
+|.++++-++..-+...-++|..+...-+...+. .++..+.+. ...+|.-+..-+.. + -..++++....+
T Consensus 104 vL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~----~lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 104 ILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLG----GLFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhcChHHHHH----HHHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 9999999888888888888888887764443322 222333222 23566544433322 1 223344456677
Q ss_pred HHHHHHhcCCCCH
Q 039154 165 RSIYTQLCQDDMP 177 (211)
Q Consensus 165 ~~~~~~L~~D~~~ 177 (211)
.....+.++|-+.
T Consensus 179 ~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 179 LTESKKVLEDVTG 191 (507)
T ss_dssp HHHHHHHTTSCCH
T ss_pred HHHHHHHhccccH
Confidence 7777777766653
No 106
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.64 E-value=0.0021 Score=61.11 Aligned_cols=136 Identities=10% Similarity=-0.019 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhccccccCccccccccchHHhhhccch--hhHHHHHHHHHHHHHHhhcChh---HHHHhhHHHHHHhhcC
Q 039154 62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE--ETCMRDKAVESLCRIGSQMRES---DLVDWFIPLVKRLAAG 136 (211)
Q Consensus 62 ~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~--~~~VR~~a~~~l~~l~~~l~~~---~~~~~l~p~i~~l~~d 136 (211)
+.++..-+.|..+. .+++.++...+++.+.+..+.+ +|..+++++.+++.+++.+..+ .+-..+++.+..|.+.
T Consensus 454 ~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~ 532 (1073)
T 3gjx_A 454 NLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQ 532 (1073)
T ss_dssp HHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccc
Confidence 35556666666555 3666677777777776655543 4889999999999999888763 3445677888888765
Q ss_pred C-----CchHHHhHHhHHHhhccCCC--hHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchh
Q 039154 137 E-----WFTARVSACGLFHIAYPSAP--DILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAH 198 (211)
Q Consensus 137 ~-----~~~vR~~~a~~l~~l~~~~~--~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~ 198 (211)
+ ...+|..++..++...+-+. .++.+..+..+++.+.|+.++|..+|+.++..++..++...
T Consensus 533 ~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~l 601 (1073)
T 3gjx_A 533 KRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHF 601 (1073)
T ss_dssp SCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGG
T ss_pred ccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 35677777777776544433 33566677777788899999999999999999999987653
No 107
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.36 E-value=0.046 Score=48.98 Aligned_cols=183 Identities=15% Similarity=0.078 Sum_probs=117.4
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhc-CC-ChHHHHHHHHHHHhccccccCccc-----
Q 039154 11 IAVLTDELKNDD-IQLRLNSIRRLSTIARALGEERTPKELIPFLSAN-ND-DDDEVLLAMAEELGVFIPYVGGVE----- 82 (211)
Q Consensus 11 l~~l~~~l~s~~-~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~-~D-~~~~VR~~~a~~L~~l~~~ig~~~----- 82 (211)
|+.|.+-+.+.. .+-|.+|+..|..+++....+--...+-+++..+ .| ++.+.-+.+-+.|-.+...-+.+.
T Consensus 23 I~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~ 102 (651)
T 3grl_A 23 IQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENS 102 (651)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---------
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccc
Confidence 777777777655 7789999999998876554332233344444443 33 344544556666644332111100
Q ss_pred ----------c------ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHH-----hhHHHHHHhhcCCCchH
Q 039154 83 ----------H------AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVD-----WFIPLVKRLAAGEWFTA 141 (211)
Q Consensus 83 ----------~------~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~-----~l~p~i~~l~~d~~~~v 141 (211)
+ ...-++.|..+++.++..||.+++..|..++..-+.+..+. .=+|.+..+.+|+...+
T Consensus 103 ~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~i 182 (651)
T 3grl_A 103 TRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVI 182 (651)
T ss_dssp -----CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHH
T ss_pred cccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHH
Confidence 0 12236778888899999999999999999998865533221 24678888899999999
Q ss_pred HHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCH----HHHHHHHHhhHHHHhh
Q 039154 142 RVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMP----MVRRSAASNLRKFAAT 193 (211)
Q Consensus 142 R~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~----~VR~aaa~~l~~~~~~ 193 (211)
|..+...+..+...-..- ..+..++.++++.+.+.. .|=.-|..-+.++++.
T Consensus 183 RneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 183 RNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence 999999998887754332 122345666666666554 5666666666666654
No 108
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.26 E-value=0.056 Score=51.47 Aligned_cols=173 Identities=10% Similarity=0.042 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhCCcchhhchhhhhhh-cC--CChHHHHHHHHHHHhccccccCccc---cccccchHHhhhccch----
Q 039154 29 SIRRLSTIARALGEERTPKELIPFLSA-NN--DDDDEVLLAMAEELGVFIPYVGGVE---HAHVLLPPLETLCTVE---- 98 (211)
Q Consensus 29 a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~--D~~~~VR~~~a~~L~~l~~~ig~~~---~~~~llp~l~~l~~d~---- 98 (211)
.++..-.....++++.+...+.+.+.+ .. ..++..+.+++=++|.++..+.++. +...+++.|..+.+..
T Consensus 458 ~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd 537 (1073)
T 3gjx_A 458 NMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKD 537 (1073)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccc
Confidence 444443334467778888888888876 33 3468999999999999987665432 2334445555555332
Q ss_pred -hhHHHHHHHHHHHHHHhhcChh-HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----------HHHHHH
Q 039154 99 -ETCMRDKAVESLCRIGSQMRES-DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----------LKTELR 165 (211)
Q Consensus 99 -~~~VR~~a~~~l~~l~~~l~~~-~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----------~~~~l~ 165 (211)
...||......+++..+-+... ..-+.++..+.+...+.+-.|..++|..|..++..++.. +...++
T Consensus 538 ~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il 617 (1073)
T 3gjx_A 538 NKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEIL 617 (1073)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHH
T ss_pred hhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHH
Confidence 3445655556777666555332 234555666666677888899999999999988776653 456666
Q ss_pred HHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHH
Q 039154 166 SIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKT 201 (211)
Q Consensus 166 ~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~ 201 (211)
..+.+...+=.+.=......+++.+++..|++....
T Consensus 618 ~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~ 653 (1073)
T 3gjx_A 618 NNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQE 653 (1073)
T ss_dssp TSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHH
Confidence 666677777788888899999999999998765433
No 109
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.22 E-value=0.012 Score=55.92 Aligned_cols=171 Identities=9% Similarity=-0.010 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc--c----c
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARAL-GEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG--V----E 82 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~l-g~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~--~----~ 82 (211)
+..+++.++++....-. |.+.+....... +...+.+.+.+++.. -...++.+|.++.-.++.++...-. . +
T Consensus 358 ~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~ 436 (1056)
T 1lsh_A 358 LLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDE 436 (1056)
T ss_dssp HHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGG
T ss_pred HHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHH
Confidence 66677777776644322 444443322222 222344444444443 3345788999999888888764321 1 1
Q ss_pred cccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh---hcCCCchHHHhHHhHHHhhccCCChH
Q 039154 83 HAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL---AAGEWFTARVSACGLFHIAYPSAPDI 159 (211)
Q Consensus 83 ~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l---~~d~~~~vR~~~a~~l~~l~~~~~~~ 159 (211)
....+...+.+.++..+..-+..++++|++++.- + .-+.+.|++... ..+..-++|..+...|..+.......
T Consensus 437 ~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p---~-~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~ 512 (1056)
T 1lsh_A 437 LLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP---N-SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK 512 (1056)
T ss_dssp GTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---G-GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh---h-HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH
Confidence 1222333333444445566678888888888874 1 122344443321 12334589999999988887654433
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhhH
Q 039154 160 LKTELRSIYTQLCQDDMPMVRRSAASNLR 188 (211)
Q Consensus 160 ~~~~l~~~~~~L~~D~~~~VR~aaa~~l~ 188 (211)
.++-++++|.+ .+..++||.+|+..|-
T Consensus 513 v~~il~~i~~n--~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 513 VQEIVLPIFLN--VAIKSELRIRSCIVFF 539 (1056)
T ss_dssp HHHHHHHHHHC--TTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCChHHHHHHHHHHH
Confidence 44555555544 5677999999987764
No 110
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.20 E-value=0.083 Score=47.33 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=101.3
Q ss_pred cchhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccCccccccccchH-Hhhhccch-hhHHHHHHHHHHHHHHhhcC
Q 039154 43 ERTPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVE-ETCMRDKAVESLCRIGSQMR 118 (211)
Q Consensus 43 ~~~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~-l~~l~~d~-~~~VR~~a~~~l~~l~~~l~ 118 (211)
..+..+-++-+.. + ...-.+=||+|...|..+++... ......=+|. +.-|-+|. +.++=.++.++|..+...-+
T Consensus 16 ~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp --CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred CCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 3455666666665 3 34568889999999999987442 2223333444 45555554 34555567888866544332
Q ss_pred hh---------------HH------HHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHH------HHHHHHh
Q 039154 119 ES---------------DL------VDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL------RSIYTQL 171 (211)
Q Consensus 119 ~~---------------~~------~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l------~~~~~~L 171 (211)
.+ .. ...-++.+..+.+...+.+|.++..++..++..-+...++.+ ++.++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 11 01 123477788888999999999999999999888776544443 4789999
Q ss_pred cCCCCHHHHHHHHHhhHHHHhh
Q 039154 172 CQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 172 ~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
++|+..-+|..+..-|.++.+.
T Consensus 175 L~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTT
T ss_pred HhCchHHHHHHHHHHHHHHhcC
Confidence 9999999999998888777763
No 111
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.13 E-value=0.15 Score=42.98 Aligned_cols=152 Identities=11% Similarity=0.072 Sum_probs=95.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp 89 (211)
+-.++.+.+......++..++++.+++-.-.+ ..-.+++|.+.+ ..|.+.+||+.+++=+...+. ...+....+++
T Consensus 27 v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~--~~~el~~~~l~ 103 (386)
T 3o2t_A 27 VVDLLNQAALITNDSKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACK--RDIELLLKLIA 103 (386)
T ss_dssp HHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHH
T ss_pred HHHHHHhhhccChHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 33445554332224788888888887654344 344677777777 778899999999888877664 23445566778
Q ss_pred HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh-hcCCCchHHHhHHhHHHhhccCCC---hHH---HH
Q 039154 90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL-AAGEWFTARVSACGLFHIAYPSAP---DIL---KT 162 (211)
Q Consensus 90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l-~~d~~~~vR~~~a~~l~~l~~~~~---~~~---~~ 162 (211)
.|..|++|++..|-..++.+...+. |.+.++ ++++. .+ .+. ..
T Consensus 104 ~L~~LL~d~d~~V~K~~I~~~tslY-------------pl~f~~i~~~~~-----------------~~~~~e~~W~~m~ 153 (386)
T 3o2t_A 104 NLNMLLRDENVNVVKKAILTMTQLY-------------KVALQWMVKSRV-----------------ISELQEACWDMVS 153 (386)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHH-------------HHHHHHHHHC-C-----------------CCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHH-------------HHHHHHHhcCCC-----------------cchhHHHHHHHHH
Confidence 8888888888888888887776643 222221 22221 01 011 12
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhC
Q 039154 163 ELRSIYTQLCQDDMPMVRRSAASNLRKFAATVE 195 (211)
Q Consensus 163 ~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~ 195 (211)
.+....+++......+||-.|++-+..++-...
T Consensus 154 ~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS 186 (386)
T 3o2t_A 154 AMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLS 186 (386)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHhC
Confidence 344444555556678888888888888876654
No 112
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.06 E-value=0.41 Score=38.01 Aligned_cols=157 Identities=10% Similarity=0.030 Sum_probs=94.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccccccccch
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp 89 (211)
+-.++.+.+......++..+++..+++-.-.+. .-.+++|.+.+ ..|.+.+||+.+++=+...+. ...+.....++
T Consensus 17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~--~k~~l~~~~l~ 93 (257)
T 3gs3_A 17 VVDWCNELVIASPSTKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK--VKVELLPHVIN 93 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH--HCGGGHHHHHH
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 445666665533368888888888876443332 34555555556 567888999999888877653 23455666778
Q ss_pred HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh-hcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154 90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL-AAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (211)
Q Consensus 90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l-~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~ 168 (211)
.|..+++|+++.|-+.++.+...+-. .+.++ ++++.-.- .+-.... ....+....
T Consensus 94 ~L~~Ll~d~d~~V~K~~I~~~~~iY~-------------~~l~~i~~~~~~~~--~~~~~W~---------~m~~lK~~I 149 (257)
T 3gs3_A 94 VVSMLLRDNSAQVIKRVIQACGSIYK-------------NGLQYLCSLMEPGD--SAEQAWN---------ILSLIKAQI 149 (257)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH-------------HHHHHHTTSSSCCH--HHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH-------------HHHHHHhcCCCCcc--hHHHHHH---------HHHHHHHHH
Confidence 88888888888888888877655433 33332 22221000 0000000 113344555
Q ss_pred HHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 169 TQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 169 ~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
+++......+||-.|.+-+..++-..
T Consensus 150 l~~~~s~n~gvkl~~iKF~e~vIl~q 175 (257)
T 3gs3_A 150 LDMIDNENDGIRTNAIKFLEGVVVLQ 175 (257)
T ss_dssp HHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHccCCcchHHHHHHHHHHHHHhh
Confidence 55566667888888888888777554
No 113
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.95 E-value=0.019 Score=51.97 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=43.4
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH---HHHHH-HHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCch
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTEL-RSIYTQLCQDDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~---~~~~l-~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
+.++|++.+| +++....|..+|..+..++..-... ..... .+++..++.|++..||.+|+..|.+++..-|++
T Consensus 34 ~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 4566766654 4556667777777777776421111 12223 344566677777777777777777776655554
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.69 E-value=0.15 Score=40.47 Aligned_cols=103 Identities=11% Similarity=0.049 Sum_probs=70.0
Q ss_pred cchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHH
Q 039154 87 LLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS 166 (211)
Q Consensus 87 llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~ 166 (211)
+..++.+.....+ ..+....+...+++-.-+++ ....++|.+..+..|+...+|+.++..+.+.+.. ..+.....++
T Consensus 17 v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~~l~ 93 (257)
T 3gs3_A 17 VVDWCNELVIASP-STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLPHVIN 93 (257)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHHHHH
T ss_pred HHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4444444433233 36777777777765554554 5566777777788888888888888888777733 1225677888
Q ss_pred HHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 167 IYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 167 ~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
.+..|++|+++.|-|.+......+-.
T Consensus 94 ~L~~Ll~d~d~~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 94 VVSMLLRDNSAQVIKRVIQACGSIYK 119 (257)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 88888888888888887776655544
No 115
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=95.67 E-value=0.0041 Score=58.70 Aligned_cols=152 Identities=11% Similarity=0.030 Sum_probs=102.2
Q ss_pred hhhchhhhhhh-cC-CChHHHHHHHHHHHhcccc----ccCccccccccchHHhhhccchh-hHHHHHHHHHHHHHHhhc
Q 039154 45 TPKELIPFLSA-NN-DDDDEVLLAMAEELGVFIP----YVGGVEHAHVLLPPLETLCTVEE-TCMRDKAVESLCRIGSQM 117 (211)
Q Consensus 45 ~~~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~----~ig~~~~~~~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l 117 (211)
....++..+.+ .. +.++ +|.++..-+..+.- .++.+ ....|...+..++.|++ .+||+.|..+|.-+.+-.
T Consensus 798 ~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 798 HVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE-EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT-HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 33444555555 44 5688 99988776543322 13333 34578889999999999 999999999999998776
Q ss_pred -ChhHHHHhhHHHHHHhhc-----------CCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCCCCHHHH
Q 039154 118 -RESDLVDWFIPLVKRLAA-----------GEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVR 180 (211)
Q Consensus 118 -~~~~~~~~l~p~i~~l~~-----------d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~~~~VR 180 (211)
+.....+.+..+..++.+ +..-..|.++.-.++++...++.+ ...+++..+-+.++|+.| |+
T Consensus 876 ~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~ 954 (997)
T 1vsy_5 876 KEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TG 954 (997)
T ss_dssp CSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HH
T ss_pred CchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hH
Confidence 434444333322232212 111256777888888886665533 556666777777889777 99
Q ss_pred HHHHHhhHHHHhhhCchhh
Q 039154 181 RSAASNLRKFAATVEPAHL 199 (211)
Q Consensus 181 ~aaa~~l~~~~~~~~~~~~ 199 (211)
+++-+.+.+|=+.-...|-
T Consensus 955 ~tvk~tlseFkrTH~D~W~ 973 (997)
T 1vsy_5 955 NAAKNTISEFKKVRADTWK 973 (997)
T ss_dssp HHTHHHHHHHHHHTSTTHH
T ss_pred HHHHHHHHHHHhccchhHH
Confidence 9999999999887766553
No 116
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=95.48 E-value=0.15 Score=39.68 Aligned_cols=138 Identities=14% Similarity=0.066 Sum_probs=83.9
Q ss_pred hhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhcc-chhhHH-HHHHHHHHHHHHhhcChhHHHHhhH
Q 039154 51 PFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT-VEETCM-RDKAVESLCRIGSQMRESDLVDWFI 127 (211)
Q Consensus 51 p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~-d~~~~V-R~~a~~~l~~l~~~l~~~~~~~~l~ 127 (211)
.++.+ ...+..|.|..+...+....+.+.. .-++.+..++. .+++.+ -..|...++.+...- + ..+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-p----~~~~ 133 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINE-----THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-P----ELIS 133 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCG-----GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-G----GGGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-H----HHHH
Confidence 45555 5566778888888877654433322 22334444443 345554 334445556655542 1 2244
Q ss_pred HHHHHhhcCCC-chHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHH
Q 039154 128 PLVKRLAAGEW-FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDI 203 (211)
Q Consensus 128 p~i~~l~~d~~-~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~l 203 (211)
+.+..++.|++ |..|.++...++- . .......+.++...++.|++.-||++++-.|.++++. .|+++...|
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~-~---~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~p~~v~~fl 205 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKY-K---QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-NPDVVWEYV 205 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTC-G---GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHH-H---hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 56777777766 5556555544332 1 1112456778888999999999999999999999887 555554443
No 117
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.12 E-value=0.28 Score=47.24 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=110.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHH----hCCc---chhhchhhhhhh-cC---CChHHHHHHHHHHHhccccccCcccccccc
Q 039154 19 KNDDIQLRLNSIRRLSTIARA----LGEE---RTPKELIPFLSA-NN---DDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (211)
Q Consensus 19 ~s~~~~~R~~a~~~l~~ia~~----lg~~---~~~~~L~p~l~~-~~---D~~~~VR~~~a~~L~~l~~~ig~~~~~~~l 87 (211)
.+.++.+|..|...|....+. ++++ ..|+.++.++.+ .. +..+.||..++..+..++..-.+ ..+..+
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~l 135 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDM 135 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHH
Confidence 466788898888877766533 4433 245566666654 21 25688999999999999886443 568888
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhc-C-----hhH-------HH---HhhHHHHHHhhcC---------------
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQM-R-----ESD-------LV---DWFIPLVKRLAAG--------------- 136 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l-~-----~~~-------~~---~~l~p~i~~l~~d--------------- 136 (211)
++-+.++++. +...++.+...|..+++.. . ... +. ..+++.+....++
T Consensus 136 l~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~ 214 (1204)
T 3a6p_A 136 LIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQE 214 (1204)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 8888887765 3456888888888887652 1 110 01 1233333333322
Q ss_pred ----CCchHHHhHHhHHHhhccCCChHH--H--HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 137 ----EWFTARVSACGLFHIAYPSAPDIL--K--TELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 137 ----~~~~vR~~~a~~l~~l~~~~~~~~--~--~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
+.-.++..+.+.+.....-.+... . ..+++.+..++.| +.+|.+|+..|.+++..-
T Consensus 215 ~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 215 SKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCC
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCC
Confidence 112345555666655555444432 1 2488888888885 678999999999999754
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.02 E-value=0.14 Score=43.04 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=65.0
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHH
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE 163 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~ 163 (211)
.+.+..+|++.....+ ..+....+.+.+++-.-+++ ....++|.+..+..|++..||+.++..+.+.+.. ..+....
T Consensus 24 ~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dps-Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~ 100 (386)
T 3o2t_A 24 SERVVDLLNQAALITN-DSKITVLKQVQELIINKDPT-LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLK 100 (386)
T ss_dssp HHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGG-GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH
T ss_pred HHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3344445544433222 34666666666654433343 4466777777788888888888877777777643 2224567
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhhHHHH
Q 039154 164 LRSIYTQLCQDDMPMVRRSAASNLRKFA 191 (211)
Q Consensus 164 l~~~~~~L~~D~~~~VR~aaa~~l~~~~ 191 (211)
.++.+..|++|+++.|-|.++.....+-
T Consensus 101 ~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 101 LIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 7777777778888877777776665543
No 119
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.49 E-value=0.45 Score=36.17 Aligned_cols=136 Identities=11% Similarity=0.035 Sum_probs=84.2
Q ss_pred HHHHHHHHHhccccccCccccccccchHHhhhccchh-hHHH-HHHHHHHHHHHhh------cChhHHHHhhHHHHHHhh
Q 039154 63 VLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE-TCMR-DKAVESLCRIGSQ------MRESDLVDWFIPLVKRLA 134 (211)
Q Consensus 63 VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~-~~VR-~~a~~~l~~l~~~------l~~~~~~~~l~p~i~~l~ 134 (211)
.|.++-+.|.. +.-.+.++|.|..+..++- ...+ ......+.++++. +.-+-.-..++|.+....
T Consensus 24 ~r~~aL~sL~~-------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCl 96 (196)
T 4atg_A 24 MKDIAIECLEK-------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCV 96 (196)
T ss_dssp THHHHHHHHHH-------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 45555555544 2335567777776665542 1111 1122233333332 233445566777765542
Q ss_pred cCCC---chHHHhHHhHHHhhccCCChH---HHHHHHHHHHHhcCCCC--HHHHHHHHHhhHHHHhhhCchhhHHHHHHH
Q 039154 135 AGEW---FTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM--PMVRRSAASNLRKFAATVEPAHLKTDIMSI 206 (211)
Q Consensus 135 ~d~~---~~vR~~~a~~l~~l~~~~~~~---~~~~l~~~~~~L~~D~~--~~VR~aaa~~l~~~~~~~~~~~~~~~llp~ 206 (211)
=... -..|..+|..+..++...|.. .+..+...+.+-+.|+. ...+-.|...| ..+|++.+..-++|-
T Consensus 97 l~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL----~~lG~~~vr~~llP~ 172 (196)
T 4atg_A 97 IGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCL----SILSKNVVNTVIREH 172 (196)
T ss_dssp HCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH----HHHCHHHHHTHHHHH
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHH----HHhHHHHHHHhhhcC
Confidence 2111 179999999999999988875 57888888888888764 66666666666 457778888888898
Q ss_pred HHh
Q 039154 207 FED 209 (211)
Q Consensus 207 ~~~ 209 (211)
+..
T Consensus 173 l~~ 175 (196)
T 4atg_A 173 AEE 175 (196)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 120
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=94.38 E-value=0.94 Score=34.82 Aligned_cols=138 Identities=8% Similarity=-0.011 Sum_probs=88.7
Q ss_pred hhhhh-cCCChHHHHHHHHHHHhccccccCccccccccchHHhhhcc-chhhHHHHHHHHHHHHHHhhcChhHHHHhhHH
Q 039154 51 PFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT-VEETCMRDKAVESLCRIGSQMRESDLVDWFIP 128 (211)
Q Consensus 51 p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~-d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p 128 (211)
.++.+ ...+.-|.|..++.-++...+.+. ..-++.+..++. .+++.+=...+..+..++..- ...+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~-----~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFS-----LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCC-----HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCC-----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHH
Confidence 45555 455788899988888876543222 233455566554 335555444335566665442 234667
Q ss_pred HHHHhhcCCC-chHHHhHHhHHHhhccCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhhHHHH
Q 039154 129 LVKRLAAGEW-FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHLKTDI 203 (211)
Q Consensus 129 ~i~~l~~d~~-~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~~~~l 203 (211)
.+..++.|++ |..|.++...++- ......+.++++...+..|++.-||++++-.|.++++. .|+++...|
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~----~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~~~v~~fl 198 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLML----KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQWVEELM 198 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTC----GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 7888888877 5445554444321 12224567788888899999999999999999999887 666655554
No 121
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.37 E-value=0.94 Score=43.63 Aligned_cols=143 Identities=16% Similarity=0.192 Sum_probs=87.7
Q ss_pred hhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchHHhhhc---cc------------hhhHHHHHHHHHHHHH
Q 039154 49 LIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLC---TV------------EETCMRDKAVESLCRI 113 (211)
Q Consensus 49 L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~---~d------------~~~~VR~~a~~~l~~l 113 (211)
|++.+.+....+|.+|......++.+...+.. .-+.+.|.|..++ .+ ....||.+|..++..+
T Consensus 534 Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~--~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L 611 (1204)
T 3a6p_A 534 LLQMVLNFDTKDPLILSCVLTNVSALFPFVTY--RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKM 611 (1204)
T ss_dssp HHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT--CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHH
Confidence 44443333567899999999999888887652 3345555555444 22 4568999999999999
Q ss_pred HhhcChhH--HHHhhHHHHHHhhcCCC---chHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCCCCHHHHHHH
Q 039154 114 GSQMRESD--LVDWFIPLVKRLAAGEW---FTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSA 183 (211)
Q Consensus 114 ~~~l~~~~--~~~~l~p~i~~l~~d~~---~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D~~~~VR~aa 183 (211)
+..++..- ..+.+...+..+..... -.-+....+.+..++..++.. +...+++.+++-.++++ +++ +
T Consensus 612 ~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~--~~~-~ 688 (1204)
T 3a6p_A 612 CRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQD--MHR-V 688 (1204)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHH--HHH-H
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHH--HHH-h
Confidence 99886542 23445555555443222 344555666666665444333 35566666666666544 333 5
Q ss_pred HHhhHHHHhhhCc
Q 039154 184 ASNLRKFAATVEP 196 (211)
Q Consensus 184 a~~l~~~~~~~~~ 196 (211)
.++...|+..+|-
T Consensus 689 ~s~~~~f~~~~G~ 701 (1204)
T 3a6p_A 689 LSDVDAFIAYVGT 701 (1204)
T ss_dssp HHCHHHHHHHHTS
T ss_pred hcCHHHHHHHhCC
Confidence 6666777776653
No 122
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=93.98 E-value=1.3 Score=34.09 Aligned_cols=157 Identities=11% Similarity=0.004 Sum_probs=98.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-c-CCChHHHHHHHHHHHhccccccCccccccccc
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-N-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~-~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~ll 88 (211)
.+.+.+...++..+.|.-|+-.+....+.+. .+-++++.. + ..++..+-=..|..++.+.. .....+.
T Consensus 57 ~~~~~~L~~s~~~E~r~la~~~l~~~~~~~~-----~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~-----~~~~~~~ 126 (220)
T 2b6c_A 57 CQEIEAYYQKTEREYQYVAIDLALQNVQRFS-----LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVA-----LHLTELP 126 (220)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHTGGGCC-----HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHH-----HSGGGHH
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHhhCC-----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH-----HChHHHH
Confidence 3444445667888999888877765432222 344566666 3 35666665555544555543 1233456
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHH
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~ 168 (211)
+.+...+.+++.-+|..|+..+..... +.-.+.+++.+..+.+|+.+-||++++-.|..++..-.+. +-.|
T Consensus 127 ~~i~~W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~-----v~~f 197 (220)
T 2b6c_A 127 TIFALFYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW-----VEEL 197 (220)
T ss_dssp HHHHHHTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH-----HHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH-----HHHH
Confidence 778889999988887777765532222 2223567888898999999999999999999998774432 2222
Q ss_pred HHhcCCCCHHHHHHHHHhh
Q 039154 169 TQLCQDDMPMVRRSAASNL 187 (211)
Q Consensus 169 ~~L~~D~~~~VR~aaa~~l 187 (211)
+. -+.=.+.+++-|.+.+
T Consensus 198 l~-~~~l~~~~~r~Aikkl 215 (220)
T 2b6c_A 198 MK-ELVLSPLAQREGSKYL 215 (220)
T ss_dssp HH-HSCCCHHHHHHHTTTS
T ss_pred Hh-hccCCHHHHHHHHHhc
Confidence 22 2233456666665555
No 123
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=92.38 E-value=1.9 Score=33.34 Aligned_cols=157 Identities=10% Similarity=0.148 Sum_probs=96.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh--cCCChHHHHHHHH-HHHhccccccCccccccccch
Q 039154 13 VLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA--NNDDDDEVLLAMA-EELGVFIPYVGGVEHAHVLLP 89 (211)
Q Consensus 13 ~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~--~~D~~~~VR~~~a-~~L~~l~~~ig~~~~~~~llp 89 (211)
.+.+...++..+.|..|+..+....+.+.++ -++.+.. -..++..+--..| ..+|.+... ......+
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~-----~p~~~~~ 134 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLK-----HPELISA 134 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHH-----CGGGGGG
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHH-----CHHHHHH
Confidence 4444557777888988888876443333322 2333333 1355666533333 344444331 2233667
Q ss_pred HHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHHHHHHHHHH
Q 039154 90 PLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT 169 (211)
Q Consensus 90 ~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~~~l~~~~~ 169 (211)
.+...+.+++.-+|..|+..+..... +.-...+++.+..+.+|+.+-||++++-.|..++..-.+ ...+.+.
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~l~~~~----~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~----~v~~fl~ 206 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQLKYKQ----KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD----VVWEYVQ 206 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHH----HHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHh----CCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHH----HHHHHHH
Confidence 78889999988887777766532221 122346777888899999999999999999998877443 2333322
Q ss_pred HhcCCCCHHHHHHHHHhhHH
Q 039154 170 QLCQDDMPMVRRSAASNLRK 189 (211)
Q Consensus 170 ~L~~D~~~~VR~aaa~~l~~ 189 (211)
+- .=.+.+++-|.+.|+.
T Consensus 207 ~~--~l~~~~~r~A~k~l~~ 224 (232)
T 3jxy_A 207 NN--ELAPLSKREAIKHIKQ 224 (232)
T ss_dssp HS--CCCHHHHHHHTTTTHH
T ss_pred HC--CCCHHHHHHHHHhccc
Confidence 22 4457788888888764
No 124
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=87.62 E-value=5.2 Score=28.38 Aligned_cols=85 Identities=9% Similarity=0.074 Sum_probs=56.9
Q ss_pred hhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHH-----HHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh
Q 039154 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL 199 (211)
Q Consensus 125 ~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~-----~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~ 199 (211)
..+..+++-.+..+..+-..+..++..+...+|..+. .+|+..+.++++...+.||.-+..-+...+..++.+-=
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~ 121 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQ 121 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3344444444555666666677777777777777622 56777777777778899999999999999999976532
Q ss_pred HHHHHHHHHh
Q 039154 200 KTDIMSIFED 209 (211)
Q Consensus 200 ~~~llp~~~~ 209 (211)
...+.-.+..
T Consensus 122 l~~i~~~Y~~ 131 (140)
T 3ldz_A 122 LSLISAMIKN 131 (140)
T ss_dssp GTHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 2334434433
No 125
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=87.56 E-value=6.6 Score=28.62 Aligned_cols=72 Identities=8% Similarity=0.113 Sum_probs=55.0
Q ss_pred hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHHH-----HHHHHHHHHhcCC-CCHHHHHHHHHhhHHHHhhhCch
Q 039154 126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQD-DMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~~-----~~l~~~~~~L~~D-~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
.+-.+++-.+..+..+...+..++..+...+|..+. .+|+..+.+++.. ..+.||.-+..-+...+..|+.+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334444444566777888888899888888888633 6677777777765 56899999999999999999764
No 126
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=86.33 E-value=4.4 Score=31.35 Aligned_cols=73 Identities=5% Similarity=-0.051 Sum_probs=51.2
Q ss_pred hHHHHHHhhcCCC-chHHHhHHh---HHHhhc-cCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhCchhh
Q 039154 126 FIPLVKRLAAGEW-FTARVSACG---LFHIAY-PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATVEPAHL 199 (211)
Q Consensus 126 l~p~i~~l~~d~~-~~vR~~~a~---~l~~l~-~~~~~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~~~~~~ 199 (211)
..+.+.+++.|+. |..|.+... .+..+. ........+.++......++|++.-||+++.-.|.++++. .+++.
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~-~~~~~ 186 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS-YVPLH 186 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH-CGGGH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh-CHHHH
Confidence 4556677766665 666666652 333321 1223446788899988899999999999999999999987 44443
No 127
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=85.03 E-value=8.8 Score=27.73 Aligned_cols=68 Identities=9% Similarity=0.137 Sum_probs=50.6
Q ss_pred HHHhhcCCCchHHHhHHhHHHhhccCCChHH-----HHHHHHH-HHHhcC---CCCHHHHHHHHHhhHHHHhhhCch
Q 039154 130 VKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSI-YTQLCQ---DDMPMVRRSAASNLRKFAATVEPA 197 (211)
Q Consensus 130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-----~~~l~~~-~~~L~~---D~~~~VR~aaa~~l~~~~~~~~~~ 197 (211)
-+++.+..+..+...+..++..+...+|..+ ..+++.- ++++.. ++...||+-+..-+...+..|+.+
T Consensus 59 ~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~ 135 (157)
T 1elk_A 59 KKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSS 135 (157)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 3445446777788888888888888888762 2456665 567663 455799999999999999999743
No 128
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=81.81 E-value=3.7 Score=29.15 Aligned_cols=111 Identities=11% Similarity=0.133 Sum_probs=59.9
Q ss_pred cchHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc--
Q 039154 8 LYPIAVLTDELKNDDI-QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-- 83 (211)
Q Consensus 8 ~~pl~~l~~~l~s~~~-~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-- 83 (211)
.+|++.+++...|+.. +.-...+-.+..+.+. ++ ...++.+..+.+ +.+.++.|..-+..-|..+++..|..-+
T Consensus 3 ~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~-~~-~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 3 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQ-SR-TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTT-ST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHC-CC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3577777877766531 1111222233333221 22 233455566666 7777787777777777777777664322
Q ss_pred --ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChh
Q 039154 84 --AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRES 120 (211)
Q Consensus 84 --~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~ 120 (211)
...++.-+..+++..+..||..+..-+..-+..+..+
T Consensus 81 vas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 81 VCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 2223344444444445567776666666666655443
No 129
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=81.11 E-value=6.2 Score=28.77 Aligned_cols=111 Identities=11% Similarity=0.112 Sum_probs=64.4
Q ss_pred cchHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCcccc--
Q 039154 8 LYPIAVLTDELKNDDI-QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVEH-- 83 (211)
Q Consensus 8 ~~pl~~l~~~l~s~~~-~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~~-- 83 (211)
-.|++.+++...|+.. +.--..+-.+..+.+. ++.. ..+.+-.+.+ +.+.++.|..-+..-|..+++..|...+
T Consensus 13 ~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~-~~~~-~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 13 ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGS-TPNG-AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHH-SSSH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhC-CCcc-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4688899988876431 1111222233333322 2333 3455556666 7788888888888888888887775222
Q ss_pred --ccccchHHhhhccc-hhhHHHHHHHHHHHHHHhhcChh
Q 039154 84 --AHVLLPPLETLCTV-EETCMRDKAVESLCRIGSQMRES 120 (211)
Q Consensus 84 --~~~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~l~~~ 120 (211)
...++.-+..+++. .+..||..+..-+..-...++.+
T Consensus 91 vas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 91 VCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 12333444444443 34577777777777766666543
No 130
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=78.79 E-value=21 Score=28.26 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=46.6
Q ss_pred cccccchHHhhhccchh-hHHHHHHHHHHHHHHhhcChhHH----HHhhHHHHHHhhcCCCchHHHhHHhHHHh
Q 039154 83 HAHVLLPPLETLCTVEE-TCMRDKAVESLCRIGSQMRESDL----VDWFIPLVKRLAAGEWFTARVSACGLFHI 151 (211)
Q Consensus 83 ~~~~llp~l~~l~~d~~-~~VR~~a~~~l~~l~~~l~~~~~----~~~l~p~i~~l~~d~~~~vR~~~a~~l~~ 151 (211)
.-.++.|.+..-.++.. +-.|..+...++.+.+.-+++.+ ...++|...+..+-.+.-.++.+.+++.+
T Consensus 98 iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqK 171 (268)
T 2fv2_A 98 IPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQK 171 (268)
T ss_dssp GGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred chHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34567788887777775 56899999999999987665533 34577887777666665555544444333
No 131
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=78.76 E-value=11 Score=26.97 Aligned_cols=114 Identities=12% Similarity=0.044 Sum_probs=71.7
Q ss_pred CCCcchHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc
Q 039154 5 DEPLYPIAVLTDELKNDDIQ-LRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE 82 (211)
Q Consensus 5 ~~~~~pl~~l~~~l~s~~~~-~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~ 82 (211)
+....|++.+++...|+... .-...+-.+..+.+. ++ ...++.+..+.. +++.++.|...+..-|...++..|...
T Consensus 6 ~~~~~~~~~~IekATs~~l~~~dw~~ileicD~I~~-~~-~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~f 83 (149)
T 3g2s_A 6 AMEPETLEARINRATNPLNKELDWASINGFCEQLNE-DF-EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRF 83 (149)
T ss_dssp CCSCCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGG-SS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHH
T ss_pred CCCCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHC-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 34568899999988776531 122233333333222 22 234555666666 888899988888888888888877532
Q ss_pred ----cccccchHHhhhccc------hhhHHHHHHHHHHHHHHhhcChh
Q 039154 83 ----HAHVLLPPLETLCTV------EETCMRDKAVESLCRIGSQMRES 120 (211)
Q Consensus 83 ----~~~~llp~l~~l~~d------~~~~VR~~a~~~l~~l~~~l~~~ 120 (211)
....++.-|..++++ ....||..+.+-+..-...|+.+
T Consensus 84 h~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 131 (149)
T 3g2s_A 84 HDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 131 (149)
T ss_dssp HHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 223345556666654 35678888888888888777543
No 132
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=78.58 E-value=26 Score=28.73 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=77.2
Q ss_pred HhhhccchhhHHHHHHHHHHHHHHhhcCh---hH---HHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----
Q 039154 91 LETLCTVEETCMRDKAVESLCRIGSQMRE---SD---LVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----- 159 (211)
Q Consensus 91 l~~l~~d~~~~VR~~a~~~l~~l~~~l~~---~~---~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----- 159 (211)
+....+..+..|-.-|..++..+...-.. +. -.+.++..+.+|.+++++-.|.-..++++++...-...
T Consensus 169 fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~ 248 (341)
T 1upk_A 169 FFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTK 248 (341)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHH
Confidence 33566677788888888888887665321 22 23457777888999999999999999999986543332
Q ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 160 --~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
...+-+.+...|++|++..++-.|..-+.-|+..
T Consensus 249 Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 249 YISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 1245677889999999999999999998888764
No 133
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=77.53 E-value=7.4 Score=29.93 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=69.3
Q ss_pred cchHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc---
Q 039154 8 LYPIAVLTDELKNDDI-QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE--- 82 (211)
Q Consensus 8 ~~pl~~l~~~l~s~~~-~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~--- 82 (211)
-.|++.+++...|+.. +.=...+-.+..+.+. ++.. .++.+..+.+ ++..++.|...+..-|..+++..|..-
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~-~~~~-~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~e 83 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQ-GDTQ-AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDE 83 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHT-TSSC-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhC-CCcc-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 3588889988876653 1122333334343332 2333 4566666777 888999988888888888888776421
Q ss_pred -cccccchHHhhhccc-hhhHHHHHHHHHHHHHHhhcChh
Q 039154 83 -HAHVLLPPLETLCTV-EETCMRDKAVESLCRIGSQMRES 120 (211)
Q Consensus 83 -~~~~llp~l~~l~~d-~~~~VR~~a~~~l~~l~~~l~~~ 120 (211)
....++..|..+++. .+..||..+.+-+..-+..+..+
T Consensus 84 ias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 84 VANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 122334445555543 24678888888888888777554
No 134
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=68.87 E-value=27 Score=24.54 Aligned_cols=92 Identities=9% Similarity=0.004 Sum_probs=58.4
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHh--hcCCCchHHHhHHhHHHhhccCCChHHH
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRL--AAGEWFTARVSACGLFHIAYPSAPDILK 161 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l--~~d~~~~vR~~~a~~l~~l~~~~~~~~~ 161 (211)
...++|-|-..++|-|+-|...++..|....+ .++|.|.+. ++|+.| .+ .++..+...++.+..
T Consensus 29 i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~~---------~l~p~I~~vl~s~D~~W--~y---wil~~lv~~~~~~~~ 94 (134)
T 3ut4_A 29 IEPIIFDLLKWLQDYNWPIAKDILPVVVLHQS---------IAMPHILTILQGNDIMW--KY---WVIKLMIPYLIYPNK 94 (134)
T ss_dssp HHHHHHHHHGGGSCTTSTTHHHHHHHHHHTHH---------HHHHHHHHHHHSSCHHH--HH---HHHHHHGGGCCHHHH
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHccH---------hhHHHHHHHHHcCChHH--HH---HHHHHHHHcCCHHHH
Confidence 44677778888889998888888887776432 344444443 445555 22 334445556666667
Q ss_pred HHHHHHHHHhcCCC-----CHHHHHHHHHhhHH
Q 039154 162 TELRSIYTQLCQDD-----MPMVRRSAASNLRK 189 (211)
Q Consensus 162 ~~l~~~~~~L~~D~-----~~~VR~aaa~~l~~ 189 (211)
..+.+-+.+++.-+ ..+|...|-.-|..
T Consensus 95 ~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~ 127 (134)
T 3ut4_A 95 QLVKSELERLSSLEIINEDIREIVNLSKDYLHF 127 (134)
T ss_dssp HHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 78888888888764 35666555554443
No 135
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=63.94 E-value=24 Score=27.02 Aligned_cols=85 Identities=7% Similarity=0.009 Sum_probs=54.3
Q ss_pred hhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH-----HHHHHHHHHHHhcCC-CCHHHHHHHHHhhHHHHhhhCchh
Q 039154 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQD-DMPMVRRSAASNLRKFAATVEPAH 198 (211)
Q Consensus 125 ~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~-----~~~~l~~~~~~L~~D-~~~~VR~aaa~~l~~~~~~~~~~~ 198 (211)
..+..|++-.+..+..+-..+..++..+....|.. ...+++..+.++++. ..+.||.-+..-+...+..|..+-
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 124 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEP 124 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 34444444445677777777777777777776664 124455555656543 458999999999999999986543
Q ss_pred hHHHHHHHHHh
Q 039154 199 LKTDIMSIFED 209 (211)
Q Consensus 199 ~~~~llp~~~~ 209 (211)
-...+.-.+..
T Consensus 125 ~l~~i~~~Y~~ 135 (226)
T 3zyq_A 125 KYKVVQDTYQI 135 (226)
T ss_dssp GGHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 22334444433
No 136
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=57.98 E-value=31 Score=25.93 Aligned_cols=146 Identities=16% Similarity=0.134 Sum_probs=82.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCC------ChHHHHHHHHHHHhccccc--cCccccc
Q 039154 14 LTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NND------DDDEVLLAMAEELGVFIPY--VGGVEHA 84 (211)
Q Consensus 14 l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D------~~~~VR~~~a~~L~~l~~~--ig~~~~~ 84 (211)
+.+.+.+ ..|..|.+.|.. +.--..|+|+|.+ ..+ .+..+-..+.+-...+... +--+-..
T Consensus 16 It~a~~~---~~r~~aL~sL~~-------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYl 85 (196)
T 4atg_A 16 ILSMIKS---DMKDIAIECLEK-------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYL 85 (196)
T ss_dssp HHHHHTS---TTHHHHHHHHHH-------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGH
T ss_pred HHHHHHh---HHHHHHHHHHhc-------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHH
Confidence 3444444 346666666632 2334778888874 211 1333333333333322221 1123344
Q ss_pred cccchHHhhhc-cch--hhHHHHHHHHHHHHHHhhcCh--hHHHHhhHHHHHHhhcCC--CchHHHhHHhHHHhhccCCC
Q 039154 85 HVLLPPLETLC-TVE--ETCMRDKAVESLCRIGSQMRE--SDLVDWFIPLVKRLAAGE--WFTARVSACGLFHIAYPSAP 157 (211)
Q Consensus 85 ~~llp~l~~l~-~d~--~~~VR~~a~~~l~~l~~~l~~--~~~~~~l~p~i~~l~~d~--~~~vR~~~a~~l~~l~~~~~ 157 (211)
+.++|.+...+ .-. ...+|+.|++.+..++..++. ......+...+.+-..|+ +....+.+...+..+ |
T Consensus 86 H~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l----G 161 (196)
T 4atg_A 86 HQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL----S 161 (196)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh----H
Confidence 45555543322 111 127999999999999999987 456666777776666664 567788888888776 4
Q ss_pred hH-HHHHHHHHHHHhcC
Q 039154 158 DI-LKTELRSIYTQLCQ 173 (211)
Q Consensus 158 ~~-~~~~l~~~~~~L~~ 173 (211)
.+ .+.-++|.+....+
T Consensus 162 ~~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 162 KNVVNTVIREHAEEYKR 178 (196)
T ss_dssp HHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhhhcCHHHHHH
Confidence 44 34445565555443
No 137
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=55.84 E-value=50 Score=23.18 Aligned_cols=29 Identities=3% Similarity=-0.134 Sum_probs=24.3
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhh
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIA 152 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l 152 (211)
.-++|.+..+.+|.+|.+-..++..|...
T Consensus 30 ~p~lp~LL~WLQD~NWPvA~~i~~~L~~~ 58 (134)
T 3ut4_A 30 EPIIFDLLKWLQDYNWPIAKDILPVVVLH 58 (134)
T ss_dssp HHHHHHHHGGGSCTTSTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHc
Confidence 34678888899999999999999888765
No 138
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=51.83 E-value=66 Score=23.37 Aligned_cols=73 Identities=7% Similarity=-0.001 Sum_probs=54.6
Q ss_pred hhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHH-----HHHHHHHHHHhcCC------CCHHHHHHHHHhhHHHHhh
Q 039154 125 WFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSIYTQLCQD------DMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 125 ~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-----~~~l~~~~~~L~~D------~~~~VR~aaa~~l~~~~~~ 193 (211)
..+-.+++-.+..+..|...+..++..+...+|..+ ..+|+..+.+++.. ..+.||.-+..-+...+..
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344445555566777888888888888888877752 35677778888763 4589999999999999999
Q ss_pred hCch
Q 039154 194 VEPA 197 (211)
Q Consensus 194 ~~~~ 197 (211)
|+.+
T Consensus 130 f~~~ 133 (171)
T 1juq_A 130 LPEE 133 (171)
T ss_dssp CTTC
T ss_pred cCCC
Confidence 9764
No 139
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=50.93 E-value=89 Score=24.61 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=56.5
Q ss_pred HHHHH-HHHHHHHHHHHHhCCc------chhhchhhhhhh-cCCC-hHHHHHHHHHHHhccccccCccccc-----cccc
Q 039154 23 IQLRL-NSIRRLSTIARALGEE------RTPKELIPFLSA-NNDD-DDEVLLAMAEELGVFIPYVGGVEHA-----HVLL 88 (211)
Q Consensus 23 ~~~R~-~a~~~l~~ia~~lg~~------~~~~~L~p~l~~-~~D~-~~~VR~~~a~~L~~l~~~ig~~~~~-----~~ll 88 (211)
...|+ +|+..+..+|..-... ...-.|.||+.. .++. .+.+|.+.-..+|.+++. +..+.. +.++
T Consensus 69 ~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~-dd~eVi~fLL~tEii 147 (268)
T 2fv2_A 69 QSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKT-DEQEVINFLLTTEII 147 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGG-CCHHHHHHHHHTTHH
T ss_pred HHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhcc-CcHHHHHHHHhhhHH
Confidence 34464 3455566666421111 233456688887 5543 456999998888888874 333332 3456
Q ss_pred hHHhhhccchhhHHHHHHHHHHHHHHh
Q 039154 89 PPLETLCTVEETCMRDKAVESLCRIGS 115 (211)
Q Consensus 89 p~l~~l~~d~~~~VR~~a~~~l~~l~~ 115 (211)
|+.-...+-.+.--+..|...+.++..
T Consensus 148 plCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 148 PLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 777777777777777777777777653
No 140
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=50.77 E-value=21 Score=30.72 Aligned_cols=56 Identities=5% Similarity=0.064 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHhccccccCc-ccccc--ccchHHhhhccchhhHHHHHHHHHHHHHH
Q 039154 59 DDDEVLLAMAEELGVFIPYVGG-VEHAH--VLLPPLETLCTVEETCMRDKAVESLCRIG 114 (211)
Q Consensus 59 ~~~~VR~~~a~~L~~l~~~ig~-~~~~~--~llp~l~~l~~d~~~~VR~~a~~~l~~l~ 114 (211)
.++.+...||.-+|.++++... ....+ ..-..+.+|+.++++.||..|..++.++.
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3566777777777777775431 11111 12345677778888888888888877764
No 141
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=50.47 E-value=26 Score=26.58 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 039154 11 IAVLTDELKNDDIQLRLNSIRRLSTIARAL 40 (211)
Q Consensus 11 l~~l~~~l~s~~~~~R~~a~~~l~~ia~~l 40 (211)
+..+...|++.|+.+...|+..|..+.+-.
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNc 73 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNC 73 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 344445555555555555555555444433
No 142
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=48.27 E-value=28 Score=24.61 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=38.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCc
Q 039154 10 PIAVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGG 80 (211)
Q Consensus 10 pl~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~ 80 (211)
.++.+.+.|++-+...| ..++.|..+|.. .-..-+.++..+.+ +....|.-+..+.--+..+++..|+
T Consensus 8 ~~~~f~~~L~~L~~nSk-~~I~~LT~~a~~--~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~ 76 (144)
T 1sz9_A 8 IVKDFNSILEELTFNSR-PIITTLTKLAEE--NISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGS 76 (144)
T ss_dssp HHHHHHHHHTTCSSCCH-HHHHHHHHHHHH--TGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhccccH-hHHHHHHHHHHH--HHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccc
Confidence 35666666655442222 244555555432 22344566666666 6666677777776666777776664
No 143
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=47.49 E-value=78 Score=22.96 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=69.2
Q ss_pred CcchHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cCCChHHHHHHHHHHHhccccccCccc--
Q 039154 7 PLYPIAVLTDELKNDDI-QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NNDDDDEVLLAMAEELGVFIPYVGGVE-- 82 (211)
Q Consensus 7 ~~~pl~~l~~~l~s~~~-~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~D~~~~VR~~~a~~L~~l~~~ig~~~-- 82 (211)
...|+..+++...|+.. +.-...+-.+..+.+. ++. ..++.+-.+.+ ++..++-|..-+..-|..+++..|..-
T Consensus 10 ~~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~-~~~-~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ 87 (171)
T 1juq_A 10 EGESLESWLNKATNPSNRQEDWEYIIGFCDQINK-ELE-GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHN 87 (171)
T ss_dssp --CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHc-CCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 45779999998877532 1122233333333222 122 23455556666 888899998888888888888777422
Q ss_pred --cccccchHHhhhccc------hhhHHHHHHHHHHHHHHhhcChh
Q 039154 83 --HAHVLLPPLETLCTV------EETCMRDKAVESLCRIGSQMRES 120 (211)
Q Consensus 83 --~~~~llp~l~~l~~d------~~~~VR~~a~~~l~~l~~~l~~~ 120 (211)
....++.-|..++.. ....||..+.+-+..-...++.+
T Consensus 88 evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 133 (171)
T 1juq_A 88 EVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEE 133 (171)
T ss_dssp HHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 223345555566542 24789999999888888888654
No 144
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=47.45 E-value=73 Score=22.60 Aligned_cols=74 Identities=8% Similarity=0.006 Sum_probs=56.3
Q ss_pred HhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHH-----HHHHHHHHHHhcCC------CCHHHHHHHHHhhHHHHh
Q 039154 124 DWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSIYTQLCQD------DMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-----~~~l~~~~~~L~~D------~~~~VR~aaa~~l~~~~~ 192 (211)
...+..+++-.++.+..+-..+..++..+...+|..+ ..+|+..+.+++.+ ..+.||.-+..-+...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 3344455444457777777788888888888888762 45678888888876 468999999999999999
Q ss_pred hhCch
Q 039154 193 TVEPA 197 (211)
Q Consensus 193 ~~~~~ 197 (211)
.|+.+
T Consensus 127 ~f~~~ 131 (149)
T 3g2s_A 127 GLPEE 131 (149)
T ss_dssp HCTTC
T ss_pred HhCCC
Confidence 99754
No 145
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=46.57 E-value=75 Score=22.46 Aligned_cols=72 Identities=7% Similarity=-0.038 Sum_probs=55.4
Q ss_pred hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChHH-----HHHHHHHHHHhcCC------CCHHHHHHHHHhhHHHHhhh
Q 039154 126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSIYTQLCQD------DMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-----~~~l~~~~~~L~~D------~~~~VR~aaa~~l~~~~~~~ 194 (211)
.+-.+++-.+..+..+-..+..++..+...+|..+ ...|+..+.+++.+ ..+.||.-+..-+...+..|
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 33444444467777788888888888888888762 46788888999876 37899999999999999998
Q ss_pred Cch
Q 039154 195 EPA 197 (211)
Q Consensus 195 ~~~ 197 (211)
+.+
T Consensus 119 ~~~ 121 (148)
T 1mhq_A 119 PED 121 (148)
T ss_dssp TTC
T ss_pred CCC
Confidence 753
No 146
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.42 E-value=39 Score=25.53 Aligned_cols=67 Identities=7% Similarity=0.053 Sum_probs=45.6
Q ss_pred HHHhhcCCCchHHHhHHhHHHhhccCCChHH-----HHHHHHHHHHhcC-CCCHHHHHHHHHhhHHHHhhhCc
Q 039154 130 VKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSIYTQLCQ-DDMPMVRRSAASNLRKFAATVEP 196 (211)
Q Consensus 130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-----~~~l~~~~~~L~~-D~~~~VR~aaa~~l~~~~~~~~~ 196 (211)
+++-.+..+..+-..+..++..+....|..+ ...++..+.++.+ ...+.||..+..-+...+..++.
T Consensus 47 l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 47 IKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 3333345666777777777777776666542 2345555566655 45689999999999999998874
No 147
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=45.37 E-value=69 Score=22.52 Aligned_cols=68 Identities=7% Similarity=0.019 Sum_probs=39.9
Q ss_pred hHHHHHHhhcCCCchHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhh
Q 039154 126 FIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAAT 193 (211)
Q Consensus 126 l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~ 193 (211)
++..+.+-........|..+.+++..++...|.+ +...+.+.|......-+..+|....+-+.-.-..
T Consensus 44 Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 44 FVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 3333333333334455556666666666666655 3445566666665555688888888877777633
No 148
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=44.78 E-value=14 Score=19.63 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhhH
Q 039154 164 LRSIYTQLCQDDMPMVRRSAASNLR 188 (211)
Q Consensus 164 l~~~~~~L~~D~~~~VR~aaa~~l~ 188 (211)
+..+|.++-.|-++++|++..+++.
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~ 32 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWV 32 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 5666777777788888887777653
No 149
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=43.88 E-value=1e+02 Score=23.38 Aligned_cols=127 Identities=3% Similarity=-0.134 Sum_probs=74.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCcchhhchhhhhhhcCCChHHHHHHHHHHHhccccccCccccccccchHH
Q 039154 12 AVLTDELKNDDIQLRLNSIRRLSTIARALGEERTPKELIPFLSANNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91 (211)
Q Consensus 12 ~~l~~~l~s~~~~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~~~D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l 91 (211)
+...+..+++..+.|.-|+-. +++.....+.+..+.. .-+++++--..+..+ ++.. ....+.+
T Consensus 51 ~la~~Lw~~~~~E~r~lA~li-------~~~~~~~~~~~~~~v~-~~~nWd~~D~~~~~l------~~~~---~~~~~~~ 113 (235)
T 1t06_A 51 ELAEELYATGNYDAMYFAGII-------ADPKAMSESDFDRWID-GAYFYMLSDYVVAVT------LSES---NIAQDVA 113 (235)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH-------CCGGGCCHHHHHHHHH-TCCSHHHHHHTHHHH------HTTS---SSHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHh-------hCHHhcCHHHHHHHHh-CCCcHHHHHHHHHHH------HhcC---chHHHHH
Confidence 445666778888888766522 2222222222222222 123344322222222 1111 2356677
Q ss_pred hhhccchhhHHHHHHHH----HHHHHHhhcChhHHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccC
Q 039154 92 ETLCTVEETCMRDKAVE----SLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (211)
Q Consensus 92 ~~l~~d~~~~VR~~a~~----~l~~l~~~l~~~~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~ 155 (211)
...+.+++.-+|..|+. .+..+..+...+...+.++..+....+|+.+.||++++-.|..++..
T Consensus 114 ~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 114 DKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 88888888777777776 33442222223455677888899899999999999999888777655
No 150
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=42.58 E-value=89 Score=22.22 Aligned_cols=107 Identities=13% Similarity=0.153 Sum_probs=59.5
Q ss_pred hHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhCCcchhhchhhhhhh-cC-CChHHHHHHHHHHHhccccccCcccc---
Q 039154 10 PIAVLTDELKNDDI-QLRLNSIRRLSTIARALGEERTPKELIPFLSA-NN-DDDDEVLLAMAEELGVFIPYVGGVEH--- 83 (211)
Q Consensus 10 pl~~l~~~l~s~~~-~~R~~a~~~l~~ia~~lg~~~~~~~L~p~l~~-~~-D~~~~VR~~~a~~L~~l~~~ig~~~~--- 83 (211)
|+..+++...|+.. +.--..+-.+..+.+. ++. ..++.+-.+.+ ++ ..++.|..-+..-|..+++..|..-+
T Consensus 16 ~~~~~IekATs~~l~~~Dw~~~leicD~I~~-~~~-~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 16 PVGQRIEKATDGSLQSEDWALNMEICDIINE-TEE-GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCHHHHHHHHHHHhC-CCc-cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 78899988877431 1111222223332222 233 33455555666 76 57888888888888888887774322
Q ss_pred -ccccchH-Hhhhccc---hhhHHHHHHHHHHHHHHhhcC
Q 039154 84 -AHVLLPP-LETLCTV---EETCMRDKAVESLCRIGSQMR 118 (211)
Q Consensus 84 -~~~llp~-l~~l~~d---~~~~VR~~a~~~l~~l~~~l~ 118 (211)
...++.- +..++.+ ....||..+.+-+..-...+.
T Consensus 94 a~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 94 ASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp TSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 1223332 3444432 234778777777777766664
No 151
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=42.30 E-value=81 Score=22.45 Aligned_cols=81 Identities=10% Similarity=0.103 Sum_probs=52.9
Q ss_pred HHHhhcCCCchHHHhHHhHHHhhccCCChHH-----HHHHHH-HHHHhcCCC---CHHHHHHHHHhhHHHHhhhCchhhH
Q 039154 130 VKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRS-IYTQLCQDD---MPMVRRSAASNLRKFAATVEPAHLK 200 (211)
Q Consensus 130 i~~l~~d~~~~vR~~~a~~l~~l~~~~~~~~-----~~~l~~-~~~~L~~D~---~~~VR~aaa~~l~~~~~~~~~~~~~ 200 (211)
.+++...++..+-..+..++..+...+|..+ ..+|+. .+.+++.+. ...||.-+..-+...+..|+.+--.
T Consensus 59 ~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l 138 (152)
T 3rru_A 59 KKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDV 138 (152)
T ss_dssp HHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCC
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 3445434555555557778888888888762 245555 467777753 3479999999999999999754223
Q ss_pred HHHHHHHHhh
Q 039154 201 TDIMSIFEDL 210 (211)
Q Consensus 201 ~~llp~~~~L 210 (211)
..+.-.+..|
T Consensus 139 ~~i~~~Y~~L 148 (152)
T 3rru_A 139 SEVKEVYLDL 148 (152)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4454444443
No 152
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=39.89 E-value=2e+02 Score=25.41 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=75.9
Q ss_pred chHHhhhccchhhHHHHHHHHHHHHHHhhcChh----------HHHHhhHHHHHHhhcCCCchHHHhHHhHHHhhccCCC
Q 039154 88 LPPLETLCTVEETCMRDKAVESLCRIGSQMRES----------DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (211)
Q Consensus 88 lp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~----------~~~~~l~p~i~~l~~d~~~~vR~~~a~~l~~l~~~~~ 157 (211)
++.+..+++..+..+-..++.-+..+...+... ......-.+++-+...++...|..+-..+..+...++
T Consensus 319 l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~~ 398 (596)
T 4f52_E 319 MGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINKLD 398 (596)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHhCC
Confidence 456777888888888888888888777776542 2233344444556778889999999999999988888
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Q 039154 158 DILKTELRSIYTQLCQDDMPMVRRSAASNLRKFAATV 194 (211)
Q Consensus 158 ~~~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~~~ 194 (211)
.+.+-.++..+++- .+.+.|+..++..+.+-+...
T Consensus 399 ~e~R~~iL~~LL~~--~~~~~v~~~lI~~~KdeI~~a 433 (596)
T 4f52_E 399 SQGKYTLFRCLLNT--SNHSGVEAFIIQNIKNQIDMS 433 (596)
T ss_dssp HHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHH
Confidence 77555566655553 366889998888888665543
No 153
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=37.36 E-value=41 Score=28.97 Aligned_cols=53 Identities=13% Similarity=-0.023 Sum_probs=40.0
Q ss_pred hHHHhHHhHHHhhccCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Q 039154 140 TARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLRKFAA 192 (211)
Q Consensus 140 ~vR~~~a~~l~~l~~~~~~~----~~~~l~~~~~~L~~D~~~~VR~aaa~~l~~~~~ 192 (211)
.+-..+|.=++.++...+.- .+-.......+|+++++++||..|..+++++..
T Consensus 420 ~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 420 IIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44556677778877766544 223457888999999999999999999988754
No 154
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=28.11 E-value=1.3e+02 Score=19.67 Aligned_cols=74 Identities=8% Similarity=0.043 Sum_probs=42.7
Q ss_pred hhcChhHHHHhhHHHHHHhhcCCCc--hHHHhHHhHHHhhccC-CChHH-HHHHHHHHHHhcCCCC--HHHHHHHHHhhH
Q 039154 115 SQMRESDLVDWFIPLVKRLAAGEWF--TARVSACGLFHIAYPS-APDIL-KTELRSIYTQLCQDDM--PMVRRSAASNLR 188 (211)
Q Consensus 115 ~~l~~~~~~~~l~p~i~~l~~d~~~--~vR~~~a~~l~~l~~~-~~~~~-~~~l~~~~~~L~~D~~--~~VR~aaa~~l~ 188 (211)
+++..++..+.++.++.++.+|.+. .+|.++-+....+-.. .+... ....+..+-...+|+. ..+|...++-+.
T Consensus 8 ~~~e~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRAAtAIs~LDeISnDPNmP~htRT~IW~ivS 87 (94)
T 2qzg_A 8 KKLSPADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQELIVRSATAIQYLDDISEDPNMPIHTRTQIWGIVS 87 (94)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Confidence 3455555555666677788888774 5777777776665333 22222 3455566666666666 455554444433
No 155
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=26.17 E-value=1.8e+02 Score=20.63 Aligned_cols=18 Identities=0% Similarity=0.060 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 039154 101 CMRDKAVESLCRIGSQMR 118 (211)
Q Consensus 101 ~VR~~a~~~l~~l~~~l~ 118 (211)
.||..+.+-+..-+..|.
T Consensus 116 ~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 116 DIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 455555555555555443
No 156
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=24.27 E-value=1.9e+02 Score=20.29 Aligned_cols=17 Identities=6% Similarity=-0.060 Sum_probs=7.0
Q ss_pred HhhHHHHHHhhcCCCch
Q 039154 124 DWFIPLVKRLAAGEWFT 140 (211)
Q Consensus 124 ~~l~p~i~~l~~d~~~~ 140 (211)
+.+++++.+-.++.+++
T Consensus 48 ~eim~~L~kRL~~k~~~ 64 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPI 64 (140)
T ss_dssp HHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHhcCCCcc
Confidence 33444444444444443
No 157
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=24.09 E-value=3.2e+02 Score=22.85 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhcChhHHHHhhHHHHHHhh---cCCCchHHHhHHhHHH-----hhccCCChHHHHHHHHHHHHhcCCC-C
Q 039154 106 AVESLCRIGSQMRESDLVDWFIPLVKRLA---AGEWFTARVSACGLFH-----IAYPSAPDILKTELRSIYTQLCQDD-M 176 (211)
Q Consensus 106 a~~~l~~l~~~l~~~~~~~~l~p~i~~l~---~d~~~~vR~~~a~~l~-----~l~~~~~~~~~~~l~~~~~~L~~D~-~ 176 (211)
-++-+..+++.+++++..+...|++.+++ +++++.|=..+..... .+...-......-++|.+.+.++.. .
T Consensus 271 FL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn 350 (403)
T 3fga_B 271 FLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWN 350 (403)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccC
Confidence 34557778888899988888888887775 5777776555544431 1221111113334444454444444 6
Q ss_pred HHHHHHHHHhhHHHHh
Q 039154 177 PMVRRSAASNLRKFAA 192 (211)
Q Consensus 177 ~~VR~aaa~~l~~~~~ 192 (211)
..||..+...+.-+.+
T Consensus 351 ~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 351 KTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7899888888876654
No 158
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=23.90 E-value=1.2e+02 Score=21.27 Aligned_cols=70 Identities=9% Similarity=-0.081 Sum_probs=44.5
Q ss_pred ccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHH---HHhhHHHHHHhhc-----C------CCchHHHhHHhHH
Q 039154 84 AHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDL---VDWFIPLVKRLAA-----G------EWFTARVSACGLF 149 (211)
Q Consensus 84 ~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~---~~~l~p~i~~l~~-----d------~~~~vR~~~a~~l 149 (211)
...|.+.|.+-+++..+.|..+|.+.|..++..-+...+ ...+ ..|+.+.+ | ....||..+-+++
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~-~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~ 125 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS-VAVRNLFHYKGHPDPLKGDALNKAVRETAHETI 125 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT-HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH-HHHHHHHhcCCCCCcccccchhHHHHHHHHHHH
Confidence 356777777777777788888888888888876554422 2222 23444432 2 2246888887777
Q ss_pred Hhhcc
Q 039154 150 HIAYP 154 (211)
Q Consensus 150 ~~l~~ 154 (211)
..++.
T Consensus 126 ~ll~d 130 (140)
T 1vdy_A 126 SAIFS 130 (140)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 76654
No 159
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=23.21 E-value=1.2e+02 Score=27.44 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHhhcChhHHHHhhHHHHHHhhcC
Q 039154 99 ETCMRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAG 136 (211)
Q Consensus 99 ~~~VR~~a~~~l~~l~~~l~~~~~~~~l~p~i~~l~~d 136 (211)
++.||.+|++.|.. .+.+++..+++.++..|.-+
T Consensus 122 ~~~VR~yAV~~L~~----~~de~L~~YLlQLVQALKyE 155 (696)
T 2x6h_A 122 HPQVRKYAVSRLAQ----APDEDLLLYLLQLVQALKYE 155 (696)
T ss_dssp CHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHHh----CChHHHHHHHHHHHHHHHhc
Confidence 56899999999976 48889999999998887666
No 160
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=22.93 E-value=2.8e+02 Score=24.66 Aligned_cols=74 Identities=26% Similarity=0.305 Sum_probs=43.7
Q ss_pred hhhhhhhc-C-CChHHHHHHHHHHHhccccccCccccccccchHHhhhccchhhHHHHHHHHHHHHHHhhcChhHHHHhh
Q 039154 49 LIPFLSAN-N-DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCMRDKAVESLCRIGSQMRESDLVDWF 126 (211)
Q Consensus 49 L~p~l~~~-~-D~~~~VR~~~a~~L~~l~~~ig~~~~~~~llp~l~~l~~d~~~~VR~~a~~~l~~l~~~l~~~~~~~~l 126 (211)
.+|-|..+ . ++..+|+.+ .+-|+...+ +..++..+.+-|- -.+..||..|++.| +..+.+++..++
T Consensus 64 aL~kfL~sV~W~~~~e~~~a-~~LL~~W~~-i~~~dALELL~~~------f~d~~VR~yAV~~L----~~~~D~eL~lYL 131 (614)
T 3ls8_A 64 ALTKFLKCVNWDLPQEAKQA-LELLGKWKP-MDVEDSLELLSSH------YTNPTVRRYAVARL----RQADDEDLLMYL 131 (614)
T ss_dssp GHHHHHTTCCTTSHHHHHHH-HHHHHHSCC-CCHHHHGGGGSTT------CCCHHHHHHHHHHH----TTSCHHHHHHTH
T ss_pred HHHHHhccCCCCCHHHHHHH-HHHHhhCCC-CCHHHHHHhCccc------CCCHHHHHHHHHHH----HhCChHHHHHHH
Confidence 34555552 2 233445443 345555444 3433333222221 23568999999988 457888899999
Q ss_pred HHHHHHhh
Q 039154 127 IPLVKRLA 134 (211)
Q Consensus 127 ~p~i~~l~ 134 (211)
+.++..|-
T Consensus 132 lQLVQALK 139 (614)
T 3ls8_A 132 LQLVQALK 139 (614)
T ss_dssp HHHHHHGG
T ss_pred HHHHHhhh
Confidence 88887774
Done!