BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039155
         (206 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From
           Colwellia Psychrerythraea 34h.
 pdb|3IC9|B Chain B, The Structure Of Dihydrolipoamide Dehydrogenase From
           Colwellia Psychrerythraea 34h.
 pdb|3IC9|C Chain C, The Structure Of Dihydrolipoamide Dehydrogenase From
           Colwellia Psychrerythraea 34h.
 pdb|3IC9|D Chain D, The Structure Of Dihydrolipoamide Dehydrogenase From
           Colwellia Psychrerythraea 34h
          Length = 492

 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 114 LGVVRTSPLVAALGVSLTIPLAMLEDMFIHHQHYSPIYIIGSVQNSSQNR 163
           L VV T P VA++G+SL      +ED++      +  Y++G V    Q R
Sbjct: 350 LSVVFTEPQVASVGLSLR----QIEDLYADQD--AANYVVGQVSFEGQGR 393


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.136    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,071,848
Number of Sequences: 62578
Number of extensions: 226490
Number of successful extensions: 772
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 1
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)