Query 039155
Match_columns 206
No_of_seqs 115 out of 552
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:16:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.8 8.4E-09 2.9E-13 80.7 6.0 71 99-169 34-105 (137)
2 3b5d_A Multidrug transporter E 98.6 2.8E-07 9.6E-12 69.0 9.1 71 99-169 34-105 (110)
3 3bo0_B Preprotein translocase 81.9 0.47 1.6E-05 31.5 1.2 27 171-197 11-40 (65)
4 2wwb_B SEC61gamma, protein tra 42.2 4.9 0.00017 27.2 -0.2 24 171-194 12-35 (68)
5 3mp7_B Preprotein translocase 41.0 6.8 0.00023 25.9 0.4 24 171-194 9-32 (61)
6 2ww9_B Protein transport prote 26.2 14 0.00046 25.8 -0.1 23 172-194 27-49 (80)
7 1rh5_B Preprotein translocase 26.2 11 0.00038 25.8 -0.5 24 171-194 13-36 (74)
8 2nml_A Enhancer of rudimentary 26.1 19 0.00066 26.3 0.7 19 186-204 73-91 (104)
9 1pq1_B BCL2-like protein 11; B 20.9 21 0.00072 20.4 0.0 9 198-206 6-14 (33)
10 3kj0_B BCL-2-like protein 11; 15.8 33 0.0011 18.7 0.0 9 198-206 8-16 (27)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.77 E-value=8.4e-09 Score=80.69 Aligned_cols=71 Identities=15% Similarity=0.019 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHH-HHhHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHhhheeccc
Q 039155 99 ANGFVGNFVSDYFWALGVVRTSPLVAALG-VSLTIPLAMLEDMFIHHQHYSPIYIIGSVQNSSQNRWIDIAE 169 (206)
Q Consensus 99 ~lgl~~svl~~~l~~~al~~tsp~~~sv~-l~L~ppla~i~d~i~~ge~ls~~~iiG~~LIl~G~~l~~~~~ 169 (206)
.++++++++++++|++++++.+++.+... ..++|++++++++++++|++++.+++|.++|++|+++++..+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 46777899999999999999999999887 799999999999999999999999999999999999998653
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.58 E-value=2.8e-07 Score=69.05 Aligned_cols=71 Identities=15% Similarity=0.019 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHH-HHhHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHhhheeccc
Q 039155 99 ANGFVGNFVSDYFWALGVVRTSPLVAALG-VSLTIPLAMLEDMFIHHQHYSPIYIIGSVQNSSQNRWIDIAE 169 (206)
Q Consensus 99 ~lgl~~svl~~~l~~~al~~tsp~~~sv~-l~L~ppla~i~d~i~~ge~ls~~~iiG~~LIl~G~~l~~~~~ 169 (206)
..++++..++++++.+++++.+...+... -.+.|.++++.+++++||++++.+++|.++|++|+++++..+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45666789999999999999999998666 689999999999999999999999999999999999988654
No 3
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=81.94 E-value=0.47 Score=31.52 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=20.3
Q ss_pred chhhhhhhcccccCCCCCccchh---hhch
Q 039155 171 KTIITTCVQQLWDCSTYSWDSYI---AYTA 197 (206)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 197 (206)
++..++.++=.|+||+|+|+++. .|+.
T Consensus 11 ~~~~~E~kkV~wptrKp~~~e~~~v~~~t~ 40 (65)
T 3bo0_B 11 REARTEVRKVIWPTRKPTKDEYLAVAKVTA 40 (65)
T ss_dssp HHHHHHHHHHSCTTTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhheeccCCCCCHHHHHHHHHHHH
Confidence 34445556678999999999998 7664
No 4
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=42.24 E-value=4.9 Score=27.21 Aligned_cols=24 Identities=4% Similarity=0.285 Sum_probs=18.5
Q ss_pred chhhhhhhcccccCCCCCccchhh
Q 039155 171 KTIITTCVQQLWDCSTYSWDSYIA 194 (206)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~ 194 (206)
++.-++.++-+..||+|++++|..
T Consensus 12 ~~f~k~~~r~lk~~~KPdr~Ef~~ 35 (68)
T 2wwb_B 12 RQFVKDSIRLVKRCTKPDRKEFQK 35 (68)
T ss_dssp HHHHHHHHHHHHHCCCCCTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHH
Confidence 455566677788999999999853
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=41.04 E-value=6.8 Score=25.90 Aligned_cols=24 Identities=8% Similarity=0.243 Sum_probs=18.1
Q ss_pred chhhhhhhcccccCCCCCccchhh
Q 039155 171 KTIITTCVQQLWDCSTYSWDSYIA 194 (206)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~ 194 (206)
++.-++.++-+..|++|++++|..
T Consensus 9 ~~f~kd~~rvlk~~~KPd~~Ef~~ 32 (61)
T 3mp7_B 9 RHFWKESRRAFLVTKKPNWATYKR 32 (61)
T ss_dssp TTHHHHHTHHHHHSCCCCTTHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHH
Confidence 444466677788999999999853
No 6
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=26.24 E-value=14 Score=25.81 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=16.9
Q ss_pred hhhhhhhcccccCCCCCccchhh
Q 039155 172 TIITTCVQQLWDCSTYSWDSYIA 194 (206)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~ 194 (206)
+.-+++++-+..||+|++++|..
T Consensus 27 ~f~kd~~rvlk~~~KPdr~Ef~~ 49 (80)
T 2ww9_B 27 EFVREGTQFLAKCKKPDLKEYTK 49 (80)
T ss_dssp HHHHHHHHHHHSCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHH
Confidence 33355566778999999999853
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=26.15 E-value=11 Score=25.81 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=18.4
Q ss_pred chhhhhhhcccccCCCCCccchhh
Q 039155 171 KTIITTCVQQLWDCSTYSWDSYIA 194 (206)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~ 194 (206)
++.-+++++-+..|++|++++|..
T Consensus 13 ~~f~kd~~rvlk~~~KPdr~EF~~ 36 (74)
T 1rh5_B 13 KEFIEECRRVWLVLKKPTKDEYLA 36 (74)
T ss_dssp CHHHHHHHHHHHSEECCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHH
Confidence 445566677788999999999853
No 8
>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A
Probab=26.08 E-value=19 Score=26.26 Aligned_cols=19 Identities=32% Similarity=0.734 Sum_probs=16.5
Q ss_pred CCCccchhhhchhHHHhhh
Q 039155 186 TYSWDSYIAYTADWISQKL 204 (206)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~ 204 (206)
.++...|+-|.-+|||+++
T Consensus 73 ~~~t~~Y~P~~K~WIKeki 91 (104)
T 2nml_A 73 RADTQTYQPYNKDWIKEKI 91 (104)
T ss_dssp ETTTTEEEEECHHHHHHHH
T ss_pred eCCCCccCCCCHHHHHHHH
Confidence 4668899999999999875
No 9
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=20.91 E-value=21 Score=20.44 Aligned_cols=9 Identities=44% Similarity=0.557 Sum_probs=7.4
Q ss_pred hHHHhhhcC
Q 039155 198 DWISQKLKR 206 (206)
Q Consensus 198 ~~~~~~~~~ 206 (206)
=||.|.|||
T Consensus 6 iwIAQELRR 14 (33)
T 1pq1_B 6 IRIAQELRR 14 (33)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 489999986
No 10
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=15.76 E-value=33 Score=18.69 Aligned_cols=9 Identities=44% Similarity=0.966 Sum_probs=6.7
Q ss_pred hHHHhhhcC
Q 039155 198 DWISQKLKR 206 (206)
Q Consensus 198 ~~~~~~~~~ 206 (206)
-||.|.|||
T Consensus 8 ~wiAqELRR 16 (27)
T 3kj0_B 8 IWYAQELRR 16 (27)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 378888876
Done!