Query 039157
Match_columns 207
No_of_seqs 277 out of 2112
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 3.5E-23 7.5E-28 186.9 7.1 67 71-143 3-70 (371)
2 KOG0713 Molecular chaperone (D 99.9 8.6E-22 1.9E-26 174.6 7.1 68 70-143 14-82 (336)
3 PRK14288 chaperone protein Dna 99.8 7.6E-20 1.7E-24 166.2 7.2 67 72-144 3-70 (369)
4 PRK14296 chaperone protein Dna 99.8 7.8E-20 1.7E-24 166.3 7.0 68 71-144 3-70 (372)
5 PRK14279 chaperone protein Dna 99.8 5.8E-19 1.3E-23 161.6 6.8 67 71-143 8-75 (392)
6 KOG0712 Molecular chaperone (D 99.8 6.3E-19 1.4E-23 157.5 6.4 64 72-143 4-67 (337)
7 PF00226 DnaJ: DnaJ domain; I 99.8 1.2E-18 2.6E-23 120.1 6.2 62 73-140 1-64 (64)
8 PRK14287 chaperone protein Dna 99.8 1.3E-18 2.9E-23 158.2 7.0 68 71-144 3-70 (371)
9 PRK14298 chaperone protein Dna 99.8 1.2E-18 2.7E-23 158.7 6.8 69 70-144 3-71 (377)
10 PRK14286 chaperone protein Dna 99.7 1.6E-18 3.4E-23 157.8 7.0 67 72-144 4-71 (372)
11 PRK14276 chaperone protein Dna 99.7 1.5E-18 3.3E-23 158.2 6.9 68 71-144 3-70 (380)
12 PRK14299 chaperone protein Dna 99.7 2.1E-18 4.5E-23 152.2 7.1 68 72-145 4-71 (291)
13 PRK14283 chaperone protein Dna 99.7 1.9E-18 4.1E-23 157.4 7.0 68 71-144 4-71 (378)
14 PRK14291 chaperone protein Dna 99.7 2.4E-18 5.3E-23 157.0 7.1 67 72-144 3-69 (382)
15 KOG0624 dsRNA-activated protei 99.7 2.3E-17 5.1E-22 147.8 13.0 116 10-142 343-462 (504)
16 PRK14278 chaperone protein Dna 99.7 2.2E-18 4.7E-23 157.2 6.3 67 72-144 3-69 (378)
17 PRK14282 chaperone protein Dna 99.7 3.5E-18 7.7E-23 155.2 7.1 68 71-144 3-72 (369)
18 PRK14285 chaperone protein Dna 99.7 3.3E-18 7.2E-23 155.3 6.8 67 72-144 3-70 (365)
19 PTZ00037 DnaJ_C chaperone prot 99.7 2.9E-18 6.3E-23 158.3 6.3 65 71-144 27-91 (421)
20 PRK14280 chaperone protein Dna 99.7 3.8E-18 8.2E-23 155.4 6.8 67 72-144 4-70 (376)
21 PRK14277 chaperone protein Dna 99.7 6.2E-18 1.3E-22 154.5 7.0 68 71-144 4-72 (386)
22 PRK14294 chaperone protein Dna 99.7 7.8E-18 1.7E-22 152.8 7.3 68 71-144 3-71 (366)
23 PRK14284 chaperone protein Dna 99.7 8.8E-18 1.9E-22 153.7 7.0 66 73-144 2-68 (391)
24 PRK14301 chaperone protein Dna 99.7 9.3E-18 2E-22 152.8 6.4 67 72-144 4-71 (373)
25 PRK14297 chaperone protein Dna 99.7 9.7E-18 2.1E-22 152.9 6.1 67 72-144 4-71 (380)
26 PRK14295 chaperone protein Dna 99.7 1.3E-17 2.7E-22 152.7 6.9 64 72-141 9-73 (389)
27 PRK14281 chaperone protein Dna 99.7 1.8E-17 3.9E-22 152.0 6.4 67 72-144 3-70 (397)
28 PRK10767 chaperone protein Dna 99.7 2.2E-17 4.8E-22 150.0 6.8 68 71-144 3-71 (371)
29 KOG0716 Molecular chaperone (D 99.7 1.8E-17 3.9E-22 143.4 5.8 68 73-146 32-100 (279)
30 TIGR02349 DnaJ_bact chaperone 99.7 2.5E-17 5.4E-22 148.7 6.7 66 73-144 1-66 (354)
31 KOG0691 Molecular chaperone (D 99.7 3.3E-17 7.2E-22 144.7 7.0 69 71-145 4-73 (296)
32 KOG0715 Molecular chaperone (D 99.7 3E-17 6.5E-22 144.9 6.6 68 73-146 44-111 (288)
33 PRK10266 curved DNA-binding pr 99.7 3.8E-17 8.2E-22 145.1 6.7 67 72-144 4-70 (306)
34 PRK14300 chaperone protein Dna 99.7 3.5E-17 7.5E-22 148.9 6.5 67 72-144 3-69 (372)
35 PRK14292 chaperone protein Dna 99.7 4.8E-17 1E-21 147.8 6.7 66 73-144 3-68 (371)
36 PRK14293 chaperone protein Dna 99.7 4.7E-17 1E-21 148.1 6.6 67 72-144 3-69 (374)
37 PRK14289 chaperone protein Dna 99.7 5.9E-17 1.3E-21 148.0 7.2 68 71-144 4-72 (386)
38 PRK14290 chaperone protein Dna 99.7 5E-17 1.1E-21 147.5 6.7 67 72-144 3-71 (365)
39 KOG0718 Molecular chaperone (D 99.7 6.5E-17 1.4E-21 148.4 6.9 74 71-150 8-85 (546)
40 KOG0717 Molecular chaperone (D 99.7 3E-17 6.4E-22 150.4 4.4 68 71-144 7-76 (508)
41 PTZ00341 Ring-infected erythro 99.6 1.9E-16 4.2E-21 155.7 7.2 69 72-146 573-641 (1136)
42 smart00271 DnaJ DnaJ molecular 99.6 3.3E-16 7.1E-21 106.2 5.7 57 73-135 2-60 (60)
43 KOG0719 Molecular chaperone (D 99.6 3.3E-16 7.2E-21 133.1 6.1 71 70-146 12-85 (264)
44 cd06257 DnaJ DnaJ domain or J- 99.6 5.9E-16 1.3E-20 103.1 6.0 54 73-132 1-55 (55)
45 KOG0721 Molecular chaperone (D 99.6 3.5E-15 7.6E-20 125.7 9.2 70 72-147 99-169 (230)
46 COG2214 CbpA DnaJ-class molecu 99.6 5E-15 1.1E-19 120.8 6.7 65 72-142 6-72 (237)
47 KOG0550 Molecular chaperone (D 99.6 1.9E-14 4.2E-19 131.1 10.5 113 12-142 325-439 (486)
48 TIGR03835 termin_org_DnaJ term 99.5 8.6E-15 1.9E-19 141.5 7.2 67 72-144 2-68 (871)
49 KOG0720 Molecular chaperone (D 99.5 9.9E-15 2.2E-19 133.9 6.6 66 71-142 234-299 (490)
50 PHA03102 Small T antigen; Revi 99.5 1.3E-14 2.8E-19 117.3 5.6 66 73-147 6-73 (153)
51 PRK05014 hscB co-chaperone Hsc 99.5 8.6E-14 1.9E-18 114.5 7.0 66 73-142 2-73 (171)
52 PRK01356 hscB co-chaperone Hsc 99.5 1.6E-13 3.5E-18 112.4 7.1 68 72-143 2-73 (166)
53 PRK00294 hscB co-chaperone Hsc 99.4 4.3E-13 9.3E-18 110.6 7.3 69 71-143 3-77 (173)
54 PRK03578 hscB co-chaperone Hsc 99.4 3.8E-13 8.3E-18 111.1 7.0 68 71-142 5-78 (176)
55 KOG0722 Molecular chaperone (D 99.4 1.9E-13 4.1E-18 117.9 3.6 67 70-142 31-97 (329)
56 KOG0714 Molecular chaperone (D 99.3 8.2E-13 1.8E-17 112.8 5.0 67 72-144 3-71 (306)
57 PRK09430 djlA Dna-J like membr 99.3 7.2E-12 1.6E-16 109.7 8.1 55 72-132 200-262 (267)
58 PHA02624 large T antigen; Prov 99.3 1.5E-11 3.3E-16 117.5 9.1 59 72-139 11-71 (647)
59 PTZ00100 DnaJ chaperone protei 99.3 7.4E-12 1.6E-16 96.8 5.3 51 72-131 65-115 (116)
60 PRK01773 hscB co-chaperone Hsc 99.1 1.3E-10 2.8E-15 95.9 7.0 67 72-142 2-74 (173)
61 COG5407 SEC63 Preprotein trans 99.1 1.6E-10 3.5E-15 106.5 7.4 66 73-144 99-170 (610)
62 KOG1150 Predicted molecular ch 99.1 1.7E-10 3.7E-15 96.6 6.2 63 72-140 53-117 (250)
63 COG5269 ZUO1 Ribosome-associat 99.0 6.3E-10 1.4E-14 97.1 4.4 68 72-142 43-113 (379)
64 TIGR00714 hscB Fe-S protein as 98.9 1.4E-09 3E-14 88.4 6.1 55 88-143 2-62 (157)
65 KOG0568 Molecular chaperone (D 98.3 7E-07 1.5E-11 76.8 4.9 54 73-132 48-102 (342)
66 KOG1789 Endocytosis protein RM 98.3 4.5E-06 9.7E-11 84.0 10.2 55 73-131 1282-1336(2235)
67 KOG0723 Molecular chaperone (D 97.7 0.0001 2.2E-09 56.2 5.4 50 75-133 59-108 (112)
68 KOG3192 Mitochondrial J-type c 97.5 0.00015 3.2E-09 58.9 4.9 69 71-143 7-81 (168)
69 KOG0431 Auxilin-like protein a 96.9 0.001 2.2E-08 62.5 4.4 48 78-131 394-449 (453)
70 COG1076 DjlA DnaJ-domain-conta 96.6 0.0015 3.2E-08 53.8 2.4 53 72-130 113-173 (174)
71 COG1076 DjlA DnaJ-domain-conta 95.8 0.0054 1.2E-07 50.4 1.9 66 73-142 2-73 (174)
72 PF03656 Pam16: Pam16; InterP 93.4 0.18 3.9E-06 39.8 5.1 53 73-134 59-111 (127)
73 KOG0724 Zuotin and related mol 85.0 0.92 2E-05 40.6 3.4 53 89-142 4-61 (335)
74 PF07719 TPR_2: Tetratricopept 84.7 3.2 6.9E-05 23.5 4.6 31 9-49 2-32 (34)
75 PF13446 RPT: A repeated domai 75.9 5.7 0.00012 26.7 4.1 27 73-104 6-32 (62)
76 PF00515 TPR_1: Tetratricopept 73.7 10 0.00022 21.5 4.4 31 9-49 2-32 (34)
77 PF13428 TPR_14: Tetratricopep 70.6 13 0.00028 22.8 4.6 30 10-49 3-32 (44)
78 TIGR03504 FimV_Cterm FimV C-te 66.0 12 0.00025 24.0 3.6 23 12-34 3-25 (44)
79 PF13512 TPR_18: Tetratricopep 65.2 43 0.00093 26.8 7.6 21 10-30 12-32 (142)
80 COG3063 PilF Tfp pilus assembl 63.2 41 0.00089 29.5 7.5 27 13-49 40-66 (250)
81 PF03704 BTAD: Bacterial trans 61.8 61 0.0013 24.6 7.8 31 9-49 63-93 (146)
82 PF14853 Fis1_TPR_C: Fis1 C-te 59.8 45 0.00098 22.0 5.8 44 8-62 1-44 (53)
83 PRK05685 fliS flagellar protei 59.8 76 0.0017 24.7 8.0 39 10-48 37-75 (132)
84 PF14687 DUF4460: Domain of un 56.6 21 0.00045 27.4 4.2 44 89-133 6-54 (112)
85 PF14561 TPR_20: Tetratricopep 56.2 67 0.0014 23.3 6.7 37 10-56 24-60 (90)
86 PF13181 TPR_8: Tetratricopept 56.1 25 0.00054 19.7 3.6 31 9-49 2-32 (34)
87 COG5552 Uncharacterized conser 55.3 45 0.00098 24.1 5.4 61 72-142 3-63 (88)
88 KOG0624 dsRNA-activated protei 54.0 1.3E+02 0.0028 28.3 9.4 101 9-128 39-157 (504)
89 PF10475 DUF2450: Protein of u 50.1 1.3E+02 0.0028 26.4 8.8 85 10-133 129-213 (291)
90 PF13414 TPR_11: TPR repeat; P 45.9 39 0.00084 22.0 3.8 31 9-49 4-34 (69)
91 PF11833 DUF3353: Protein of u 45.6 40 0.00087 28.3 4.6 39 89-135 4-42 (194)
92 KOG4648 Uncharacterized conser 45.1 55 0.0012 30.7 5.7 76 12-104 101-211 (536)
93 PF07709 SRR: Seven Residue Re 44.6 21 0.00045 17.2 1.6 13 119-131 2-14 (14)
94 PF13174 TPR_6: Tetratricopept 43.8 53 0.0012 17.9 3.7 21 11-31 3-23 (33)
95 PRK10866 outer membrane biogen 41.6 2.2E+02 0.0048 24.2 10.9 32 90-123 136-170 (243)
96 KOG4234 TPR repeat-containing 40.6 1.3E+02 0.0029 26.2 7.0 34 10-54 97-130 (271)
97 PF13763 DUF4167: Domain of un 35.2 1.6E+02 0.0034 21.4 5.7 39 5-43 36-77 (80)
98 TIGR00208 fliS flagellar biosy 35.0 2.1E+02 0.0045 22.0 8.9 40 9-48 32-71 (124)
99 KOG3442 Uncharacterized conser 34.7 55 0.0012 25.9 3.5 34 74-113 61-94 (132)
100 KOG0548 Molecular co-chaperone 33.4 2.6E+02 0.0057 27.3 8.4 23 8-30 358-380 (539)
101 PF13432 TPR_16: Tetratricopep 32.3 82 0.0018 20.2 3.7 27 13-49 2-28 (65)
102 PF10041 DUF2277: Uncharacteri 32.0 2E+02 0.0043 20.8 5.7 44 75-124 6-49 (78)
103 COG3629 DnrI DNA-binding trans 31.4 3.6E+02 0.0078 24.0 8.5 43 10-62 155-197 (280)
104 PF14863 Alkyl_sulf_dimr: Alky 31.0 1.2E+02 0.0027 24.0 5.1 41 9-60 71-111 (141)
105 PF13374 TPR_10: Tetratricopep 30.9 1.1E+02 0.0023 17.4 4.8 30 11-40 5-34 (42)
106 PF11817 Foie-gras_1: Foie gra 30.1 91 0.002 26.6 4.5 24 11-34 181-204 (247)
107 PF14559 TPR_19: Tetratricopep 29.9 72 0.0016 20.5 3.1 20 11-30 28-47 (68)
108 PF02216 B: B domain; InterPr 28.8 59 0.0013 21.9 2.4 30 73-111 12-41 (54)
109 cd00084 HMG-box High Mobility 28.7 1.2E+02 0.0025 19.5 4.0 42 96-142 13-54 (66)
110 PF04505 Dispanin: Interferon- 28.2 64 0.0014 23.2 2.7 25 14-48 43-67 (82)
111 smart00028 TPR Tetratricopepti 28.0 86 0.0019 15.4 3.5 20 11-30 4-23 (34)
112 cd01390 HMGB-UBF_HMG-box HMGB- 27.7 1.2E+02 0.0026 19.6 3.9 39 99-142 16-54 (66)
113 cd01388 SOX-TCF_HMG-box SOX-TC 27.2 88 0.0019 21.3 3.2 41 97-142 15-55 (72)
114 KOG4234 TPR repeat-containing 26.8 1.6E+02 0.0034 25.7 5.2 80 17-103 133-213 (271)
115 PRK10803 tol-pal system protei 26.6 3.3E+02 0.007 23.7 7.4 33 8-50 142-175 (263)
116 KOG0547 Translocase of outer m 25.5 1.7E+02 0.0036 28.7 5.6 41 5-56 112-152 (606)
117 PF06160 EzrA: Septation ring 24.3 5.9E+02 0.013 24.7 9.3 37 13-49 178-214 (560)
118 cd01389 MATA_HMG-box MATA_HMG- 24.2 1.6E+02 0.0035 20.1 4.2 43 95-142 13-55 (77)
119 KOG0545 Aryl-hydrocarbon recep 23.6 2.1E+02 0.0045 25.7 5.5 103 13-125 183-292 (329)
120 PF02561 FliS: Flagellar prote 22.9 3.4E+02 0.0073 20.4 6.4 38 10-49 31-68 (122)
121 KOG0527 HMG-box transcription 20.2 99 0.0021 28.2 2.9 38 99-142 79-116 (331)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.5e-23 Score=186.90 Aligned_cols=67 Identities=33% Similarity=0.528 Sum_probs=64.5
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCC-ChhHHHHHHHHHHHHHHcCChhhHHHHhhhc
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCS-FVEVKNANKLVTEAWEVLSDARRKEAYDLLM 143 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~-~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~ 143 (207)
.+|||+||||+++ ||.+|||+|||+||++ ||||+|+ ...|+++|++|++|||||+||+||+.||++|
T Consensus 3 ~~dyYeiLGV~k~-----As~~EIKkAYRkLA~k-yHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG 70 (371)
T COG0484 3 KRDYYEILGVSKD-----ASEEEIKKAYRKLAKK-YHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFG 70 (371)
T ss_pred ccchhhhcCCCCC-----CCHHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccC
Confidence 4699999999999 9999999999999999 9999999 6679999999999999999999999999996
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.6e-22 Score=174.61 Aligned_cols=68 Identities=26% Similarity=0.421 Sum_probs=65.6
Q ss_pred cCCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh-HHHHHHHHHHHHHHcCChhhHHHHhhhc
Q 039157 70 ETKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE-VKNANKLVTEAWEVLSDARRKEAYDLLM 143 (207)
Q Consensus 70 ~~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~-a~~~f~~i~~Ay~vLsd~~kR~~YD~~~ 143 (207)
..+|||+||||+.+ |+..|||+||||||++ +|||||+++. |.+.|+.|+.||+||+||++|+.||.+|
T Consensus 14 ~~rDfYelLgV~k~-----Asd~eIKkAYRKLALk-~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~G 82 (336)
T KOG0713|consen 14 AGRDFYELLGVPKN-----ASDQEIKKAYRKLALK-YHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYG 82 (336)
T ss_pred cCCCHHHHhCCCCC-----CCHHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 45799999999999 9999999999999999 9999999987 9999999999999999999999999997
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=7.6e-20 Score=166.18 Aligned_cols=67 Identities=30% Similarity=0.446 Sum_probs=63.4
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCC-hhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSF-VEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.|||+||||+++ ||.+|||+|||+||++ ||||+|+. ..++++|++|++||+||+||.+|+.||++|.
T Consensus 3 ~dyY~vLgv~~~-----As~~eIkkayrkla~k-~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 3 LSYYEILEVEKH-----SNQETIKKSYRKLALK-YHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CChHHHcCCCCC-----CCHHHHHHHHHHHHHH-HCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 599999999999 9999999999999999 99999984 4589999999999999999999999999874
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=7.8e-20 Score=166.30 Aligned_cols=68 Identities=25% Similarity=0.425 Sum_probs=64.7
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.+|||+||||+++ |+.+|||+|||+||++ ||||+|+...++++|++|++||+||+||.+|+.||++|.
T Consensus 3 ~~dyY~~Lgv~~~-----a~~~eik~ayrkla~~-~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 3 KKDYYEVLGVSKT-----ASEQEIRQAYRKLAKQ-YHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred CCCHHHhcCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence 3699999999999 9999999999999999 999999887799999999999999999999999999864
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=5.8e-19 Score=161.59 Aligned_cols=67 Identities=31% Similarity=0.439 Sum_probs=63.4
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCh-hHHHHHHHHHHHHHHcCChhhHHHHhhhc
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFV-EVKNANKLVTEAWEVLSDARRKEAYDLLM 143 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~ 143 (207)
.+|||+||||+++ |+.+|||+|||+|+++ ||||+++.. .+.++|++|++||+||+||++|+.||++|
T Consensus 8 ~~Dyy~~Lgv~~~-----a~~~eik~ayr~la~~-~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 8 EKDFYKELGVSSD-----ASAEEIKKAYRKLARE-LHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred ccCHHHhcCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 3699999999999 9999999999999999 999999854 58999999999999999999999999986
No 6
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.3e-19 Score=157.51 Aligned_cols=64 Identities=31% Similarity=0.467 Sum_probs=62.0
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhc
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLM 143 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~ 143 (207)
..||.||||+++ |+.+|||+|||+|+++ ||||||++ +.++|++|++||+||+||++|+.||++|
T Consensus 4 ~~~y~il~v~~~-----As~~eikkayrkla~k-~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g 67 (337)
T KOG0712|consen 4 TKLYDILGVSPD-----ASEEEIKKAYRKLALK-YHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYG 67 (337)
T ss_pred cccceeeccCCC-----cCHHHHHHHHHHHHHH-hCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 479999999999 9999999999999999 99999999 8999999999999999999999999995
No 7
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.76 E-value=1.2e-18 Score=120.11 Aligned_cols=62 Identities=37% Similarity=0.506 Sum_probs=59.9
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh--HHHHHHHHHHHHHHcCChhhHHHHh
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE--VKNANKLVTEAWEVLSDARRKEAYD 140 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsd~~kR~~YD 140 (207)
|||+||||+++ ++.++|+++|++++++ +|||+++... +.+.|..|++||++|+|+.+|+.||
T Consensus 1 ~~y~iLgl~~~-----~~~~eik~~y~~l~~~-~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPD-----ASDEEIKKAYRRLSKQ-YHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTT-----SSHHHHHHHHHHHHHH-TSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCC-----CCHHHHHHHHHhhhhc-cccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 68999999999 9999999999999999 9999998876 8999999999999999999999998
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.3e-18 Score=158.17 Aligned_cols=68 Identities=29% Similarity=0.528 Sum_probs=64.6
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
..|||+||||+++ |+.+|||+|||+|+++ ||||+|+...++++|++|++||++|+||.+|+.||++|.
T Consensus 3 ~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~-~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 3 KRDYYEVLGVDRN-----ASVDEVKKAYRKLARK-YHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCCHHHhcCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 3599999999999 9999999999999999 999999877789999999999999999999999999874
No 9
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.2e-18 Score=158.74 Aligned_cols=69 Identities=32% Similarity=0.526 Sum_probs=65.1
Q ss_pred cCCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 70 ETKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 70 ~~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
..+|||+||||+++ |+.+|||+|||+|+++ ||||+++...++++|++|++||++|+||.+|+.||++|.
T Consensus 3 ~~~d~y~iLgv~~~-----a~~~eik~ayr~la~~-~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 3 TTRDYYEILGLSKD-----ASVEDIKKAYRKLAMK-YHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred CCCCHHHhhCCCCC-----CCHHHHHHHHHHHHHH-hCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence 34699999999999 9999999999999999 999999877799999999999999999999999999874
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.6e-18 Score=157.79 Aligned_cols=67 Identities=31% Similarity=0.508 Sum_probs=63.4
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCC-hhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSF-VEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.|||+||||+++ |+.+|||+|||+|+++ ||||+|+. ..++++|++|++||+||+||.+|+.||++|.
T Consensus 4 ~d~y~~Lgv~~~-----a~~~eik~ayr~la~~-~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 4 RSYYDILGVSKS-----ANDEEIKSAYRKLAIK-YHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCHHHhcCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 599999999999 9999999999999999 99999985 4588999999999999999999999999874
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.5e-18 Score=158.24 Aligned_cols=68 Identities=31% Similarity=0.479 Sum_probs=64.8
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.+|||+||||+++ |+.+|||+|||+|+++ ||||+|+...++++|++|++||++|+||.+|+.||++|.
T Consensus 3 ~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~-~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 3 NTEYYDRLGVSKD-----ASQDEIKKAYRKLSKK-YHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCCHHHhhCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 3699999999999 9999999999999999 999999987799999999999999999999999999874
No 12
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.1e-18 Score=152.21 Aligned_cols=68 Identities=26% Similarity=0.458 Sum_probs=64.7
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcCc
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMGF 145 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~~ 145 (207)
+|||+||||+++ ||.+|||+|||+|+++ ||||+++...++++|++|++||++|+|+.+|+.||++|..
T Consensus 4 ~d~y~vLgv~~~-----a~~~eik~ayr~la~~-~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 4 KDYYAILGVPKN-----ASQDEIKKAFKKLARK-YHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCHHHHcCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 599999999999 9999999999999999 9999998777999999999999999999999999998643
No 13
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.9e-18 Score=157.45 Aligned_cols=68 Identities=28% Similarity=0.485 Sum_probs=64.8
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.+|||+||||+++ |+.+|||+|||+|+++ ||||+|+...++++|++|++||++|+|+.+|+.||++|.
T Consensus 4 ~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~-~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 4 KRDYYEVLGVDRN-----ADKKEIKKAYRKLARK-YHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred cCChHHhhCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 4699999999999 9999999999999999 999999877799999999999999999999999999864
No 14
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.4e-18 Score=156.96 Aligned_cols=67 Identities=31% Similarity=0.520 Sum_probs=64.2
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
+|||+||||+++ |+.++||+|||+|+++ ||||+|+...+.++|++|++||++|+||.+|+.||++|.
T Consensus 3 ~d~Y~~Lgv~~~-----a~~~~ik~ayr~la~~-~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 3 KDYYEILGVSRN-----ATQEEIKKAYRRLARK-YHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCHHHhhCCCCC-----CCHHHHHHHHHHHHHH-HCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 699999999999 9999999999999999 999999987799999999999999999999999999864
No 15
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.74 E-value=2.3e-17 Score=147.76 Aligned_cols=116 Identities=24% Similarity=0.261 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHhccCCCchhhcCcccCCCCCCC
Q 039157 10 AADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNPNDIPGFGRYTASYLVHRLASETKSWYGVLGLKEGRGGGAT 89 (207)
Q Consensus 10 ~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p~~~~~~~~~~~~~~v~~~a~~~~d~Y~vLgv~~~~~~~~a 89 (207)
-.++.||.||.+.+|+.| +||+.++..+++ +...+..-+....-....+..+|||.||||.++ |
T Consensus 343 ~l~dRAeA~l~dE~YD~A----------I~dye~A~e~n~-sn~~~reGle~Akrlkkqs~kRDYYKILGVkRn-----A 406 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDA----------IHDYEKALELNE-SNTRAREGLERAKRLKKQSGKRDYYKILGVKRN-----A 406 (504)
T ss_pred HHHHHHHHHhhhHHHHHH----------HHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccchHHHHhhhccc-----c
Confidence 456889999999998888 566999999999 555555544444444356788899999999999 9
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCChh----HHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 90 RVEEINKHYEVLSTLFQQPNMCSFVE----VKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 90 s~~eIk~aYrklal~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
+..||.+|||+++.+ ||||...+.. ++.+|.-|..|-|||+||++|+.||..
T Consensus 407 sKqEI~KAYRKlAqk-WHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 407 SKQEITKAYRKLAQK-WHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred cHHHHHHHHHHHHHh-cCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 999999999999999 9999988765 888999999999999999999999987
No 16
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.2e-18 Score=157.15 Aligned_cols=67 Identities=28% Similarity=0.459 Sum_probs=64.1
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
+|||+||||+++ |+.++||+|||+|+++ ||||+|+...++++|++|++||+||+|+.+|+.||++|.
T Consensus 3 ~d~y~iLgv~~~-----a~~~eik~ayr~la~~-~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRN-----ASDAEIKRAYRKLARE-LHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCC-----CCHHHHHHHHHHHHHH-HCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 599999999999 9999999999999999 999999977789999999999999999999999999864
No 17
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.5e-18 Score=155.23 Aligned_cols=68 Identities=31% Similarity=0.471 Sum_probs=63.5
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCh--hHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFV--EVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.+|||+||||+++ |+.+|||+|||+|+++ ||||+|+.. .+++.|++|++||++|+||.+|+.||++|.
T Consensus 3 ~~d~y~~lgv~~~-----a~~~eik~ayr~la~~-~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 3 KKDYYEILGVSRN-----ATQEEIKRAYKRLVKE-WHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCChHHhcCCCCC-----CCHHHHHHHHHHHHHH-HCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 3699999999999 9999999999999999 999999853 488999999999999999999999999864
No 18
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.3e-18 Score=155.28 Aligned_cols=67 Identities=31% Similarity=0.499 Sum_probs=63.2
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCh-hHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFV-EVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
+|||+||||+++ |+.+|||+|||+|+++ ||||+|+.. .+.++|++|++||+||+|+.+|..||++|.
T Consensus 3 ~d~y~iLgv~~~-----a~~~eIk~ayr~la~~-~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~ 70 (365)
T PRK14285 3 RDYYEILGLSKG-----ASKDEIKKAYRKIAIK-YHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH 70 (365)
T ss_pred CCHHHhcCCCCC-----CCHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence 599999999999 9999999999999999 999999864 488999999999999999999999999864
No 19
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.73 E-value=2.9e-18 Score=158.30 Aligned_cols=65 Identities=29% Similarity=0.430 Sum_probs=61.3
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.+|||+||||+++ ||.+|||+|||+||++ ||||+|++ .++|++|++||+||+||.+|+.||.+|.
T Consensus 27 ~~d~Y~vLGV~~~-----As~~eIKkAYrkla~k-~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 27 NEKLYEVLNLSKD-----CTTSEIKKAYRKLAIK-HHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred chhHHHHcCCCCC-----CCHHHHHHHHHHHHHH-HCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 3599999999999 9999999999999999 99999864 5899999999999999999999999874
No 20
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.8e-18 Score=155.44 Aligned_cols=67 Identities=31% Similarity=0.516 Sum_probs=64.5
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
+|||+||||+++ |+.++||+|||+|+++ ||||+++...++++|++|++||++|+||.+|+.||++|.
T Consensus 4 ~~~y~iLgv~~~-----a~~~eik~ayr~la~~-~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 4 RDYYEVLGVSKS-----ASKDEIKKAYRKLSKK-YHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CChHHhhCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 599999999999 9999999999999999 999999887799999999999999999999999999874
No 21
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=6.2e-18 Score=154.50 Aligned_cols=68 Identities=31% Similarity=0.517 Sum_probs=63.6
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCh-hHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFV-EVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
..|||+||||+++ |+.+|||+|||+|+++ ||||+++.. .++++|++|++||+||+|+.+|+.||++|.
T Consensus 4 ~~d~y~~Lgv~~~-----a~~~eik~ayr~la~~-~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 4 KKDYYEILGVDRN-----ATEEEIKKAYRRLAKK-YHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred CCCHHHhcCCCCC-----CCHHHHHHHHHHHHHH-HCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 3699999999999 9999999999999999 999999854 488999999999999999999999999864
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=7.8e-18 Score=152.82 Aligned_cols=68 Identities=31% Similarity=0.470 Sum_probs=63.8
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCC-hhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSF-VEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.+|||+||||+++ |+.+|||+|||+|+++ ||||+++. ..+++.|+.|++||+||+||.+|+.||++|.
T Consensus 3 ~~d~y~~lgv~~~-----a~~~eik~ayr~la~~-~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~ 71 (366)
T PRK14294 3 KRDYYEILGVTRD-----ASEEEIKKSYRKLAMK-YHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGH 71 (366)
T ss_pred CCChHHHhCCCCC-----CCHHHHHHHHHHHHHH-HCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence 4699999999999 9999999999999999 99999985 4588999999999999999999999999874
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=8.8e-18 Score=153.72 Aligned_cols=66 Identities=36% Similarity=0.520 Sum_probs=62.6
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCh-hHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFV-EVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
|||+||||+++ |+.+|||+|||+|+++ ||||+|++. .++++|++|++||++|+|+.+|+.||++|.
T Consensus 2 d~y~iLgv~~~-----a~~~eikkayr~la~~-~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 2 DYYTILGVSKT-----ASPEEIKKAYRKLAVK-YHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CHHHhcCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 89999999999 9999999999999999 999999864 488999999999999999999999999864
No 24
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=9.3e-18 Score=152.77 Aligned_cols=67 Identities=31% Similarity=0.472 Sum_probs=63.1
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCh-hHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFV-EVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
+|||+||||+++ |+.++||+|||+|+++ ||||+++.. .++++|++|++||+||+||.+|+.||++|.
T Consensus 4 ~~~y~~Lgv~~~-----a~~~~ik~ayr~la~~-~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 4 RDYYEVLGVSRD-----ASEDEIKKAYRKLALQ-YHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CChHHhcCCCCC-----CCHHHHHHHHHHHHHH-hCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 699999999999 9999999999999999 999999864 488899999999999999999999999864
No 25
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=9.7e-18 Score=152.90 Aligned_cols=67 Identities=34% Similarity=0.528 Sum_probs=63.4
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCh-hHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFV-EVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.|||+||||+++ |+.++||+|||+|+++ ||||+++.. .++++|++|++||++|+||.+|+.||++|.
T Consensus 4 ~d~y~~Lgv~~~-----a~~~~ik~ayr~la~~-~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 4 KDYYEVLGLEKG-----ASDDEIKKAFRKLAIK-YHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred CChHHhhCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence 599999999999 9999999999999999 999999864 488999999999999999999999999874
No 26
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.3e-17 Score=152.66 Aligned_cols=64 Identities=31% Similarity=0.514 Sum_probs=61.2
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCh-hHHHHHHHHHHHHHHcCChhhHHHHhh
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFV-EVKNANKLVTEAWEVLSDARRKEAYDL 141 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsd~~kR~~YD~ 141 (207)
.|||+||||+++ |+.+|||+|||+|+++ ||||+++.. .++++|++|++||+||+||.+|+.||+
T Consensus 9 ~d~y~~Lgv~~~-----a~~~eik~ayr~la~~-~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 9 KDYYKVLGVPKD-----ATEAEIKKAYRKLARE-YHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred cCHHHhcCCCCC-----CCHHHHHHHHHHHHHH-HCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 599999999999 9999999999999999 999999864 489999999999999999999999998
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.8e-17 Score=151.98 Aligned_cols=67 Identities=31% Similarity=0.476 Sum_probs=63.0
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCh-hHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFV-EVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
+|||+||||+++ |+.++||+|||+|+++ ||||+++.. .+++.|++|++||++|+|+.+|+.||++|.
T Consensus 3 ~d~y~iLgv~~~-----a~~~eikkayr~la~~-~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 3 RDYYEVLGVSRS-----ADKDEIKKAYRKLALK-YHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CChhhhcCCCCC-----CCHHHHHHHHHHHHHH-HCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 599999999999 9999999999999999 999999864 488999999999999999999999999864
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.2e-17 Score=150.01 Aligned_cols=68 Identities=32% Similarity=0.495 Sum_probs=63.3
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCC-hhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSF-VEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
..|||+||||+++ |+.++||+|||+|+++ ||||+++. ..+.+.|++|++||++|+|+.+|..||++|.
T Consensus 3 ~~d~y~iLgv~~~-----as~~eik~ayr~la~~-~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 71 (371)
T PRK10767 3 KRDYYEVLGVSRN-----ASEDEIKKAYRKLAMK-YHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH 71 (371)
T ss_pred CCChHHhcCCCCC-----CCHHHHHHHHHHHHHH-HCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence 3599999999999 9999999999999999 99999985 4488999999999999999999999999864
No 29
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.8e-17 Score=143.37 Aligned_cols=68 Identities=28% Similarity=0.420 Sum_probs=64.4
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCC-hhHHHHHHHHHHHHHHcCChhhHHHHhhhcCcC
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSF-VEVKNANKLVTEAWEVLSDARRKEAYDLLMGFT 146 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~~~ 146 (207)
|+|+||||+++ ++.++|||+||+|+++ +|||+++. +.+.++|++|++||++|+|+.+|..||.+|+.+
T Consensus 32 ~LYdVLgl~k~-----at~d~IKKaYR~L~~k-~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~ 100 (279)
T KOG0716|consen 32 DLYDVLGLPKT-----ATKDEIKKAYRKLALK-YHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELG 100 (279)
T ss_pred HHHHHhCCCcc-----cchHHHHHHHHHHHHH-hCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHH
Confidence 89999999999 9999999999999999 99999998 559999999999999999999999999997543
No 30
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.69 E-value=2.5e-17 Score=148.70 Aligned_cols=66 Identities=32% Similarity=0.500 Sum_probs=62.9
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
|||+||||+++ |+.++||+|||+|+++ ||||+++...+.++|++|++||++|+|+.+|..||.+|.
T Consensus 1 d~y~~Lgv~~~-----a~~~~ik~ayr~la~~-~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 66 (354)
T TIGR02349 1 DYYEILGVSKD-----ASEEEIKKAYRKLAKK-YHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH 66 (354)
T ss_pred ChHHhCCCCCC-----CCHHHHHHHHHHHHHH-HCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence 79999999999 9999999999999999 999999866689999999999999999999999999864
No 31
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.3e-17 Score=144.68 Aligned_cols=69 Identities=29% Similarity=0.395 Sum_probs=65.1
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh-HHHHHHHHHHHHHHcCChhhHHHHhhhcCc
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE-VKNANKLVTEAWEVLSDARRKEAYDLLMGF 145 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~-a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~~ 145 (207)
..|||.||||+.+ ++..+|+++||+.+++ |||||||++. |.+.|+.+.+||+||+|+..|..||..+..
T Consensus 4 ~~dyY~lLgi~~~-----at~~eIkKaYr~kaL~-~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISED-----ATDAEIKKAYRKKALQ-YHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCC-----CCHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 3499999999999 9999999999999999 9999999977 999999999999999999999999999643
No 32
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3e-17 Score=144.91 Aligned_cols=68 Identities=26% Similarity=0.451 Sum_probs=65.7
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcCcC
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMGFT 146 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~~~ 146 (207)
|||+||||+++ |+..|||+||++|+++ ||||.|....+.+.|++|.+|||+|+|+++|..||..+...
T Consensus 44 d~Y~vLgv~~~-----At~~EIK~Af~~LaKk-yHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 44 DYYKVLGVSRN-----ATLSEIKSAFRKLAKK-YHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred chhhhhCcCCC-----CCHHHHHHHHHHHHHh-hCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 99999999999 9999999999999999 99999999999999999999999999999999999997543
No 33
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.68 E-value=3.8e-17 Score=145.08 Aligned_cols=67 Identities=33% Similarity=0.585 Sum_probs=64.0
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
+|||+||||+++ ++.++||++||+|+++ ||||+++...+.+.|++|++||++|+|+.+|..||.++.
T Consensus 4 ~d~y~~Lgv~~~-----a~~~eik~ayr~la~k-~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPT-----DDLKTIKTAYRRLARK-YHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 599999999999 9999999999999999 999999877799999999999999999999999999863
No 34
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.5e-17 Score=148.95 Aligned_cols=67 Identities=22% Similarity=0.455 Sum_probs=63.8
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.|||+||||+++ |+.+|||+|||+|+++ ||||+++...++++|++|++||++|+|+.+|+.||++|.
T Consensus 3 ~~~y~iLgv~~~-----as~~eik~ayr~la~~-~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 3 QDYYQILGVSKT-----ASQADLKKAYLKLAKQ-YHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred CChHHHcCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence 599999999999 9999999999999999 999999876789999999999999999999999999864
No 35
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=4.8e-17 Score=147.84 Aligned_cols=66 Identities=26% Similarity=0.415 Sum_probs=63.6
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
|||+||||+++ |+.++||+|||+|+++ ||||+++...+.++|++|++||++|+||.+|+.||.+|.
T Consensus 3 d~y~~Lgv~~~-----a~~~~ik~ayr~l~~~-~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~ 68 (371)
T PRK14292 3 DYYELLGVSRT-----ASADEIKSAYRKLALK-YHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGT 68 (371)
T ss_pred ChHHHcCCCCC-----CCHHHHHHHHHHHHHH-HCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence 89999999999 9999999999999999 999999877799999999999999999999999999874
No 36
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=4.7e-17 Score=148.10 Aligned_cols=67 Identities=24% Similarity=0.445 Sum_probs=64.1
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.|||+||||+++ ++.++||+|||+|+++ ||||+++...++++|++|++||++|+|+.+|+.||.+|.
T Consensus 3 ~d~y~vLgv~~~-----a~~~eik~ayr~la~~-~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 3 ADYYEILGVSRD-----ADKDELKRAYRRLARK-YHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CChhhhcCCCCC-----CCHHHHHHHHHHHHHH-HCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 599999999999 9999999999999999 999999887799999999999999999999999999864
No 37
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=5.9e-17 Score=147.98 Aligned_cols=68 Identities=29% Similarity=0.456 Sum_probs=63.8
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCh-hHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFV-EVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~-~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
..|||+||||+++ |+.+|||+|||+|+++ ||||+++.. .+.++|+.|++||++|+|+.+|+.||++|.
T Consensus 4 ~~~~y~~Lgv~~~-----a~~~eik~ayr~la~~-~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 4 KRDYYEVLGVSKT-----ATVDEIKKAYRKKAIQ-YHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred cCCHHHHcCCCCC-----CCHHHHHHHHHHHHHH-HCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 4699999999999 9999999999999999 999999864 489999999999999999999999999864
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=5e-17 Score=147.55 Aligned_cols=67 Identities=30% Similarity=0.503 Sum_probs=63.2
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCh--hHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFV--EVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.|||+||||+++ |+.+|||+|||+|+++ ||||+++.. .+.+.|+.|++||++|+|+.+|+.||++|.
T Consensus 3 ~d~y~vLgv~~~-----a~~~eik~ayr~la~~-~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~ 71 (365)
T PRK14290 3 KDYYKILGVDRN-----ASQEDIKKAFRELAKK-WHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT 71 (365)
T ss_pred CChhhhcCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence 599999999999 9999999999999999 999999864 488999999999999999999999999864
No 39
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.5e-17 Score=148.42 Aligned_cols=74 Identities=27% Similarity=0.374 Sum_probs=67.6
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh----HHHHHHHHHHHHHHcCChhhHHHHhhhcCcC
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE----VKNANKLVTEAWEVLSDARRKEAYDLLMGFT 146 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~~~ 146 (207)
..|||.+|+|+++ ||.+||++|||+++++ +||||..++. |++.|++|.+|||||+||.+|+.||.+|..+
T Consensus 8 e~e~Ya~LNlpkd-----At~eeI~~AYrr~~~l-fHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG 81 (546)
T KOG0718|consen 8 EIELYALLNLPKD-----ATDEEIKKAYRRLSRL-FHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG 81 (546)
T ss_pred hhhHHHHhCCCcc-----cCHHHHHHHHHHHHHh-cCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence 3489999999999 9999999999999999 9999998765 9999999999999999999999999998666
Q ss_pred CCCC
Q 039157 147 NRKN 150 (207)
Q Consensus 147 ~~~~ 150 (207)
-...
T Consensus 82 L~t~ 85 (546)
T KOG0718|consen 82 LKTE 85 (546)
T ss_pred cccc
Confidence 5533
No 40
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3e-17 Score=150.43 Aligned_cols=68 Identities=28% Similarity=0.434 Sum_probs=63.3
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh--HHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE--VKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.++||+||||..+ ++..+||++||+|||+ ||||||+... +++.|++|+.||+|||||..|+.||....
T Consensus 7 ~~c~YE~L~v~~~-----a~d~eik~~YRklALq-~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 7 KRCYYEVLGVERD-----ADDDEIKKNYRKLALQ-YHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hhHHHHHhccccc-----CCHHHHHHHHHHHHHh-hCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 3489999999999 9999999999999999 9999988754 99999999999999999999999998853
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.65 E-value=1.9e-16 Score=155.72 Aligned_cols=69 Identities=25% Similarity=0.291 Sum_probs=65.4
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcCcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMGFT 146 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~~~ 146 (207)
.|||+||||+++ |+..+||+|||+||++ ||||+++.+.+.+.|+.|++||+||+||.+|+.||.+|..+
T Consensus 573 ~dYYdILGVs~d-----AS~~EIKKAYRKLAlk-yHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 573 TLFYDILGVGVN-----ADMKEISERYFKLAEN-YYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CChHHHcCCCCC-----CCHHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 599999999999 9999999999999999 99999998788899999999999999999999999987543
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.64 E-value=3.3e-16 Score=106.23 Aligned_cols=57 Identities=32% Similarity=0.526 Sum_probs=53.4
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCC--ChhHHHHHHHHHHHHHHcCChhh
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCS--FVEVKNANKLVTEAWEVLSDARR 135 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~--~~~a~~~f~~i~~Ay~vLsd~~k 135 (207)
|||+||||+++ ++.++||++|++++++ +|||+++ ...+.+.|++|++||++|+||.+
T Consensus 2 ~~y~vLgl~~~-----~~~~~ik~ay~~l~~~-~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 2 DYYEILGVPRD-----ASLDEIKKAYRKLALK-YHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CHHHHcCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 89999999999 9999999999999999 9999998 45689999999999999999853
No 43
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.3e-16 Score=133.15 Aligned_cols=71 Identities=24% Similarity=0.393 Sum_probs=64.8
Q ss_pred cCCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh---HHHHHHHHHHHHHHcCChhhHHHHhhhcCcC
Q 039157 70 ETKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE---VKNANKLVTEAWEVLSDARRKEAYDLLMGFT 146 (207)
Q Consensus 70 ~~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~---a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~~~ 146 (207)
.+.|.|+||||..+ |+..+|++||++|+++ ||||+++... +.+.|+.|+.||.||+|.++|+.||..|...
T Consensus 12 ~~~d~YevLGVer~-----a~~~eIrkAY~klal~-~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERD-----ATDKEIRKAYHKLALR-LHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhccc-----CCHHHHHHHHHHHHHH-hCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 34599999999999 9999999999999999 9999997433 8899999999999999999999999997554
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.63 E-value=5.9e-16 Score=103.08 Aligned_cols=54 Identities=35% Similarity=0.505 Sum_probs=51.6
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCC-hhHHHHHHHHHHHHHHcCC
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSF-VEVKNANKLVTEAWEVLSD 132 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd 132 (207)
|||+||||+++ ++.++|+++|++|+++ +|||++.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~-----~~~~~ik~~y~~l~~~-~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPD-----ASDEEIKKAYRKLALK-YHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999 9999999999999999 99999988 6689999999999999986
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.5e-15 Score=125.70 Aligned_cols=70 Identities=23% Similarity=0.319 Sum_probs=64.6
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCC-hhHHHHHHHHHHHHHHcCChhhHHHHhhhcCcCC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSF-VEVKNANKLVTEAWEVLSDARRKEAYDLLMGFTN 147 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~-~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~~~~ 147 (207)
-|+|+||||+++ ++..|||++||+|+++ +||||++. .+.++.|..|++||+.|+|+..|+.|..+|.-.+
T Consensus 99 fDPyEILGl~pg-----as~~eIKkaYR~LSik-~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 99 FDPYEILGLDPG-----ASEKEIKKAYRRLSIK-YHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred CCcHHhhCCCCC-----CCHHHHHHHHHHhhhh-hCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 399999999999 9999999999999999 99999988 4578889999999999999999999999975444
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5e-15 Score=120.81 Aligned_cols=65 Identities=31% Similarity=0.505 Sum_probs=62.3
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh--HHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE--VKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
.|||+||||+++ ++..+|+++||+++++ +|||+++... +.+.|+.|++||++|+|+.+|..||..
T Consensus 6 ~~~y~iLgv~~~-----as~~eik~ayrkla~~-~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 6 LDYYEILGVPPN-----ASLEEIKKAYRKLALK-YHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhHHHHhCCCCC-----CCHHHHHHHHHHHHHH-hCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 489999999999 9999999999999999 9999999876 899999999999999999999999985
No 47
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.9e-14 Score=131.09 Aligned_cols=113 Identities=24% Similarity=0.284 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHhccCCCchhhcCcccCCCCCCCcH
Q 039157 12 DGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNPNDIPGFGRYTASYLVHRLASETKSWYGVLGLKEGRGGGATRV 91 (207)
Q Consensus 12 ~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p~~~~~~~~~~~~~~v~~~a~~~~d~Y~vLgv~~~~~~~~as~ 91 (207)
...|+-++..+++++|.+. +.++..+.- + ..+.+.+.-...-...+..+|||.|||+... ++.
T Consensus 325 l~ra~c~l~le~~e~AV~d----------~~~a~q~~~-s-~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~-----as~ 387 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVED----------YEKAMQLEK-D-CEIRRTLREAQLALKKSKRKDWYKILGISRN-----ASD 387 (486)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHhhcc-c-cchHHHHHHHHHHHHHhhhhhHHHHhhhhhh-----ccc
Confidence 3455555556666666555 888888877 3 4566666554444345677899999999999 999
Q ss_pred HHHHHHHHHHhhccCCCCCCCChh--HHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 92 EEINKHYEVLSTLFQQPNMCSFVE--VKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 92 ~eIk~aYrklal~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
.+|+++||++++. +|||++.+.. ++..|+.|.+||.+|+|+.+|..||..
T Consensus 388 ~eikkayrk~AL~-~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 388 DEIKKAYRKLALV-HHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred chhhhHHHHHHHH-hCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 9999999999999 9999998873 888999999999999999999999988
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.54 E-value=8.6e-15 Score=141.48 Aligned_cols=67 Identities=24% Similarity=0.409 Sum_probs=63.8
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
+|||+||||+++ ++..+||++||+|+++ +|||+++...+.+.|+.|++||++|+|+.+|..||.+|.
T Consensus 2 ~DYYeVLGVs~d-----AS~eEIKKAYRKLAKK-yHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRD-----ADEQEIKKAFRKLAKK-YHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCC-----CCHHHHHHHHHHHHHH-HCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 599999999999 9999999999999999 999999887788899999999999999999999999864
No 49
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=9.9e-15 Score=133.92 Aligned_cols=66 Identities=26% Similarity=0.406 Sum_probs=64.3
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
..|+|.||||+.+ ++.++|||.|||+|.+ .|||||..+.|+++|+.|+.||++|+|+.+|..||..
T Consensus 234 ~~daYsvlGl~~d-----~sd~~lKk~Yrk~A~L-VhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 234 ILDAYSALGLPSD-----CSDADLKKNYRKKAML-VHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCCchhhcCCCCC-----CCHHHHHHHHHhhceE-eCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 4699999999999 9999999999999999 9999999999999999999999999999999999987
No 50
>PHA03102 Small T antigen; Reviewed
Probab=99.52 E-value=1.3e-14 Score=117.27 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=61.1
Q ss_pred CchhhcCcccCCCCCCC--cHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhhcCcCC
Q 039157 73 SWYGVLGLKEGRGGGAT--RVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLLMGFTN 147 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~a--s~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~~~~ 147 (207)
.+|+||||+++ | |.++||++||+++++ +|||++++ .+.|+.|++||++|+|+.+|..||..|....
T Consensus 6 ~l~~vLGl~~~-----A~~s~~eIKkAYr~la~~-~HPDkgg~---~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 6 ELMDLLGLPRS-----AWGNLPLMRKAYLRKCLE-FHPDKGGD---EEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHcCCCCC-----CCCCHHHHHHHHHHHHHH-HCcCCCch---hHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 67999999999 9 999999999999999 99999755 6899999999999999999999999986553
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.47 E-value=8.6e-14 Score=114.45 Aligned_cols=66 Identities=14% Similarity=0.294 Sum_probs=58.5
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh------HHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE------VKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
|||+||||++. +.++..+|+++||+++++ +|||+..+.. +.+.|..|++||++|+||.+|..|+..
T Consensus 2 ~yf~llgl~~~---~~~d~~~L~~~yr~l~~~-~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 2 DYFTLFGLPAR---YDIDTQLLASRYQELQRQ-FHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CHHHHCCCCCC---CCCCHHHHHHHHHHHHHH-hCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 89999999985 346789999999999999 9999976543 566799999999999999999999965
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.45 E-value=1.6e-13 Score=112.40 Aligned_cols=68 Identities=19% Similarity=0.365 Sum_probs=59.0
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh----HHHHHHHHHHHHHHcCChhhHHHHhhhc
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE----VKNANKLVTEAWEVLSDARRKEAYDLLM 143 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~----a~~~f~~i~~Ay~vLsd~~kR~~YD~~~ 143 (207)
.|||+||||++. +.++..+|+++||+++++ +|||+..+.. +...|..|++||++|+||.+|..|+...
T Consensus 2 ~~yf~llgl~~~---f~id~~~L~~aYr~lq~~-~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQE---YNIDLKILEKQYFAMQVK-YHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCC---CCCCHHHHHHHHHHHHHH-HCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 389999999986 447899999999999999 9999987643 3345889999999999999999998764
No 53
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.41 E-value=4.3e-13 Score=110.57 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=61.3
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh------HHHHHHHHHHHHHHcCChhhHHHHhhhc
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE------VKNANKLVTEAWEVLSDARRKEAYDLLM 143 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~kR~~YD~~~ 143 (207)
..|||++|||++. +..+..+|+++||+|+++ +|||++.+.. +.+.|..|++||++|+||.+|+.|+...
T Consensus 3 ~~~~F~l~~l~~~---f~id~~~L~~~Yr~Lq~~-~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l 77 (173)
T PRK00294 3 TPCHFALFDLQPS---FRLDLDQLATRYRELARE-VHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL 77 (173)
T ss_pred CCChhhhcCcCCC---CCCCHHHHHHHHHHHHHH-HCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 4699999999987 667789999999999999 9999987643 5667999999999999999999999763
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.41 E-value=3.8e-13 Score=111.14 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=58.9
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh------HHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE------VKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
..|||+||||++. +.++..+|+++||+|+++ +|||++.+.. +.+.+..|++||++|+||.+|..|+..
T Consensus 5 ~~dyf~llglp~~---f~~d~~~L~~~yr~lq~~-~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 5 KDDHFSLFGLPAR---FALDEAALDAAYRTVQAQ-VHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCHHHHcCCCCC---CCCCHHHHHHHHHHHHHH-HCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 3599999999986 446899999999999999 9999987533 344579999999999999999999975
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.9e-13 Score=117.94 Aligned_cols=67 Identities=27% Similarity=0.410 Sum_probs=64.1
Q ss_pred cCCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 70 ETKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 70 ~~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
...|+|+||||... ++..+|.++||+|+++ +|||+++++.+.+.|+.|..||++|.|.+.|..||-.
T Consensus 31 G~enCYdVLgV~Re-----a~KseIakAYRqLARr-hHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 31 GAENCYDVLGVARE-----ANKSEIAKAYRQLARR-HHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred cchhHHHHhhhhhh-----ccHHHHHHHHHHHHHH-hCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 44699999999999 9999999999999999 9999999999999999999999999999999999966
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=8.2e-13 Score=112.78 Aligned_cols=67 Identities=30% Similarity=0.481 Sum_probs=62.6
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCh--hHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFV--EVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~--~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
.|||.||||... ++..+|++||++++++ +|||+++.. .+..+|++|.+||++|+|+.+|..||+++.
T Consensus 3 ~d~~~~l~i~~~-----as~~~i~ka~~~~a~~-~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 3 KDYYKILGIARS-----ASEEDIKKAYRKLALK-YHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred ccHHHHhCcccc-----ccHHHHHHHHHHHHHh-hCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 599999999999 9999999999999999 999999888 466689999999999999999999999985
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.30 E-value=7.2e-12 Score=109.66 Aligned_cols=55 Identities=24% Similarity=0.389 Sum_probs=50.0
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCC--------hhHHHHHHHHHHHHHHcCC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSF--------VEVKNANKLVTEAWEVLSD 132 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~--------~~a~~~f~~i~~Ay~vLsd 132 (207)
.|+|+||||+++ +|.++||++||+|+++ ||||++.+ ..++++|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~~-----as~~eIk~aYr~L~~~-~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSES-----DDDQEIKRAYRKLMSE-HHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCC-----CCHHHHHHHHHHHHHH-hCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999 9999999999999999 99999753 1278899999999999975
No 58
>PHA02624 large T antigen; Provisional
Probab=99.26 E-value=1.5e-11 Score=117.51 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=55.9
Q ss_pred CCchhhcCcccCCCCCCC--cHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHH
Q 039157 72 KSWYGVLGLKEGRGGGAT--RVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAY 139 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~a--s~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~Y 139 (207)
+++|+||||+++ + +.++||++||+++++ +|||++++ .+.|++|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~~-----A~gs~~eIKkAYRkLAkk-yHPDKgGd---eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMA-----AWGNLPLMRKAYLRKCKE-YHPDKGGD---EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCC-----CCCCHHHHHHHHHHHHHH-HCcCCCCc---HHHHHHHHHHHHHHhcHHHhhhc
Confidence 489999999999 9 999999999999999 99999644 78999999999999999999999
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.26 E-value=7.4e-12 Score=96.84 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=47.1
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcC
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLS 131 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLs 131 (207)
.++|+||||+++ ++.+||+++||+|+++ +|||++. ..+.|++|++||++|.
T Consensus 65 ~eAy~ILGv~~~-----As~~eIkkaYRrLa~~-~HPDkgG---s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPT-----ASKERIREAHKQLMLR-NHPDNGG---STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCC-----CCHHHHHHHHHHHHHH-hCCCCCC---CHHHHHHHHHHHHHHh
Confidence 389999999999 9999999999999999 9999854 4788999999999985
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.12 E-value=1.3e-10 Score=95.85 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=60.1
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh------HHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE------VKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
.|||++|||++. +..+...++++|++|.++ +|||+..+.. +.+....|++||.+|+||-+|+.|=..
T Consensus 2 ~nyF~lf~lp~~---F~iD~~~L~~~y~~Lq~~-~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~ 74 (173)
T PRK01773 2 NNPFALFDLPVD---FQLDNALLSERYLALQKS-LHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA 74 (173)
T ss_pred CChHHhcCCCCC---CCCCHHHHHHHHHHHHHH-hCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence 389999999887 779999999999999999 9999986654 555689999999999999999999865
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.10 E-value=1.6e-10 Score=106.48 Aligned_cols=66 Identities=29% Similarity=0.442 Sum_probs=61.6
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCC---h---hHHHHHHHHHHHHHHcCChhhHHHHhhhcC
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSF---V---EVKNANKLVTEAWEVLSDARRKEAYDLLMG 144 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~---~---~a~~~f~~i~~Ay~vLsd~~kR~~YD~~~~ 144 (207)
|.|+|||++.+ ++..+||++||+|+.+ +||||.+. . ..++.++.|++||+.|+|...|+.|-.+|.
T Consensus 99 DPyEILGI~~~-----ts~rdik~~yr~Ls~K-fhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 99 DPYEILGIDQD-----TSERDIKKRYRMLSMK-FHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred ChHHhhcccCC-----CcHHHHHHHHHhheee-cChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 99999999999 9999999999999999 99999887 2 278889999999999999999999998863
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.7e-10 Score=96.62 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=57.8
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh--HHHHHHHHHHHHHHcCChhhHHHHh
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE--VKNANKLVTEAWEVLSDARRKEAYD 140 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~--a~~~f~~i~~Ay~vLsd~~kR~~YD 140 (207)
-|.|+||.|.+. .+.++||+.||+|+++ .|||||+++. |..+|..|..||..|-|+..|...+
T Consensus 53 LNpfeVLqIdpe-----v~~edikkryRklSil-VHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 53 LNPFEVLQIDPE-----VTDEDIKKRYRKLSIL-VHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred cChHHHHhcCCC-----CCHHHHHHHHHhhhee-ecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 389999999999 9999999999999999 9999999985 9999999999999999998665443
No 63
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=6.3e-10 Score=97.13 Aligned_cols=68 Identities=24% Similarity=0.217 Sum_probs=61.3
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCC---hhHHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSF---VEVKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~---~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
.|+|.+|||+.. ++.++..+|.++.++.+.+ ||||+... .++.+.|++|+.||+||+|+.+|..||..
T Consensus 43 ~DlYa~lgLsky--R~ka~~~qi~kah~kkv~k-yHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 43 VDLYALLGLSKY--RTKAIPPQILKAHKKKVYK-YHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhHHHHhchHhh--hcCCCcHHHHHHHHHHHHH-hCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 499999999976 5668999999999999999 99999833 33899999999999999999999999976
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.95 E-value=1.4e-09 Score=88.41 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=48.7
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCChh------HHHHHHHHHHHHHHcCChhhHHHHhhhc
Q 039157 88 ATRVEEINKHYEVLSTLFQQPNMCSFVE------VKNANKLVTEAWEVLSDARRKEAYDLLM 143 (207)
Q Consensus 88 ~as~~eIk~aYrklal~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~kR~~YD~~~ 143 (207)
..+..+|+++||+|+++ +|||+..+.. +.+.|..|++||++|+||.+|+.|+...
T Consensus 2 ~iD~~~L~~~yr~lq~~-~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQ-YHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCCHHHHHHHHHHHHHH-HCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 36789999999999999 9999965532 6678999999999999999999999874
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=7e-07 Score=76.78 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=51.1
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHH-HcCC
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWE-VLSD 132 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~-vLsd 132 (207)
.||.||||..+ ++.++++.+|.+|+++ +|||........+.|+.|.+||. ||+.
T Consensus 48 e~fril~v~e~-----~~adevr~af~~lakq-~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 48 ECFRILGVEEG-----ADADEVREAFHDLAKQ-VHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHhccccc-----CchhHHHHHHHHHHHH-cCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 79999999999 9999999999999999 99999998888999999999998 7763
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.5e-06 Score=84.00 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=48.1
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcC
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLS 131 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLs 131 (207)
+-|+||.|+.+ .+.....+.||++|+||+.+ |||||||. ..++|..|++|||.|+
T Consensus 1282 ~A~eiL~i~l~-n~~hD~~~KirrqY~kLA~k-YHPDKNPE--GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLT-NEEHDKPAKIRRQYYKLAAK-YHPDKNPE--GREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccC-CCCcccHHHHHHHHHHHHHH-hCCCCCch--HHHHHHHHHHHHHHHH
Confidence 78999999876 23334568999999999999 99999976 6899999999999998
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0001 Score=56.18 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=43.5
Q ss_pred hhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCCh
Q 039157 75 YGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDA 133 (207)
Q Consensus 75 Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~ 133 (207)
-.||||.+. ++.+.||.++|++.+. .|||+..++- .-.+|+||+++|...
T Consensus 59 ~lIL~v~~s-----~~k~KikeaHrriM~~-NHPD~GGSPY---lAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 59 ALILGVTPS-----LDKDKIKEAHRRIMLA-NHPDRGGSPY---LASKINEAKDLLEGT 108 (112)
T ss_pred HHHhCCCcc-----ccHHHHHHHHHHHHHc-CCCcCCCCHH---HHHHHHHHHHHHhcc
Confidence 459999999 9999999999999999 9999999865 234699999999753
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00015 Score=58.89 Aligned_cols=69 Identities=13% Similarity=0.297 Sum_probs=56.1
Q ss_pred CCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh------HHHHHHHHHHHHHHcCChhhHHHHhhhc
Q 039157 71 TKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE------VKNANKLVTEAWEVLSDARRKEAYDLLM 143 (207)
Q Consensus 71 ~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~kR~~YD~~~ 143 (207)
..+||.++|.... +...++.+..-|.-..++ +|||+..... +.+....|++||.+|.||-+|+.|=..-
T Consensus 7 ~~~ff~~Fg~e~~---~~~~p~~l~~~~~~~skk-L~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 7 PSRFFDIFGMELS---FKIDPDKLKEKYTDISKK-LHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred HHHHHHHhccccC---CCCCcchhhHHHHHHHHh-hCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3489999987655 346677777788888999 9999954432 7888999999999999999999998763
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.91 E-value=0.001 Score=62.55 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=39.2
Q ss_pred cCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh--------HHHHHHHHHHHHHHcC
Q 039157 78 LGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE--------VKNANKLVTEAWEVLS 131 (207)
Q Consensus 78 Lgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~--------a~~~f~~i~~Ay~vLs 131 (207)
.++..- .+.++||++|||.+|. +||||.+..+ +++.|..+++||..-.
T Consensus 394 VsltDL-----Vtp~~VKKaYrKA~L~-VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 394 VSLTDL-----VTPAQVKKAYRKAVLC-VHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred Cchhhc-----cCHHHHHHHHHhhhhe-eCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555 8999999999999999 9999998864 7777888888887543
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0015 Score=53.77 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=46.6
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh--------HHHHHHHHHHHHHHc
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE--------VKNANKLVTEAWEVL 130 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~--------a~~~f~~i~~Ay~vL 130 (207)
.|.|.+||+... .+..+|+++|+++... .|||+-...+ +.+.++.|++||+.+
T Consensus 113 ~~~l~~l~~~~~-----~~~~~i~~~~r~l~~e-~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIK-----ADQDAIKKAYRKLLSE-QHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchh-----hhHHHHHHHHHHHHHh-cCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 489999999999 9999999999999999 9999976644 777888899888753
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0054 Score=50.38 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=52.0
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChh------HHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVE------VKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~------a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
|++..+|+.+. +....+.++..|+.+.+. +|||+..... +-+.+..++.||.+|.||-+|..|=..
T Consensus 2 ~~~~~~~~~~~---f~~~~~~l~~~~~~~~~~-~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRA---FQIDLDALKLQYRELQRA-YHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHH---HHHHHhHhhhhHHHHHHh-hCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34555555544 224567889999999999 9999987765 345689999999999999999999865
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=93.38 E-value=0.18 Score=39.77 Aligned_cols=53 Identities=26% Similarity=0.194 Sum_probs=36.5
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChh
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDAR 134 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~ 134 (207)
.-..||||++. .+.++|.+.|.+|-.. -+|++..+ .-.=.+|..|.+.|..+-
T Consensus 59 EA~~ILnv~~~-----~~~eeI~k~y~~Lf~~-Nd~~kGGS---fYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNVKEE-----LSREEIQKRYKHLFKA-NDPSKGGS---FYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT--G-------SHHHHHHHHHHHHHH-T-CCCTS----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCc-----cCHHHHHHHHHHHHhc-cCCCcCCC---HHHHHHHHHHHHHHHHHH
Confidence 45789999999 9999999999999999 99998876 333345667777775433
No 73
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=85.04 E-value=0.92 Score=40.57 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=43.9
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCC-----hhHHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 89 TRVEEINKHYEVLSTLFQQPNMCSF-----VEVKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 89 as~~eIk~aYrklal~~~HPDk~~~-----~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
++..+|+.+|+..++. +||++-.. ....+.|++|.+||++|++..+|..+|..
T Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALK-SHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhh-cCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 6788999999999999 99998752 23677799999999999997666666655
No 74
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.72 E-value=3.2 Score=23.49 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 039157 9 DAADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNP 49 (207)
Q Consensus 9 ~~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p 49 (207)
+-+..++.-++..|+++.|++. ..++..++|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~----------~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEY----------FEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHH----------HHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHH----------HHHHHHHCc
Confidence 4456788999999999999999 888888888
No 75
>PF13446 RPT: A repeated domain in UCH-protein
Probab=75.87 E-value=5.7 Score=26.71 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=24.1
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhc
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTL 104 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~ 104 (207)
+-|++|||++. .+.+.|-.+|+.....
T Consensus 6 ~Ay~~Lgi~~~-----~~Dd~Ii~~f~~~~~~ 32 (62)
T PF13446_consen 6 EAYEILGIDED-----TDDDFIISAFQSKVND 32 (62)
T ss_pred HHHHHhCcCCC-----CCHHHHHHHHHHHHHc
Confidence 46999999999 9999999999887776
No 76
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=73.71 E-value=10 Score=21.52 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 039157 9 DAADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNP 49 (207)
Q Consensus 9 ~~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p 49 (207)
+-+..++.-++..|+++.|..+ ..++..++|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~----------~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEY----------YQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHH----------HHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHH----------HHHHHHHCc
Confidence 4566788999999999999999 788888887
No 77
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=70.61 E-value=13 Score=22.83 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 039157 10 AADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNP 49 (207)
Q Consensus 10 ~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p 49 (207)
-....|.-|+..|+++.|.+. +.++...+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~----------~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERL----------LRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHH----------HHHHHHHCc
Confidence 345788999999999999999 788888899
No 78
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.97 E-value=12 Score=23.98 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 039157 12 DGIAKEYLIDKDTEACRDTLRAI 34 (207)
Q Consensus 12 ~~~a~~~~~~~d~~~a~~~l~~~ 34 (207)
.+.|+.|+.-||.++|+..|..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~ev 25 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEV 25 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHH
Confidence 46899999999999999995433
No 79
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=65.21 E-value=43 Score=26.85 Aligned_cols=21 Identities=19% Similarity=0.028 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 039157 10 AADGIAKEYLIDKDTEACRDT 30 (207)
Q Consensus 10 ~~~~~a~~~~~~~d~~~a~~~ 30 (207)
.....|+..|..|+|+.|.+.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~ 32 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQ 32 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHH
Confidence 334445555555555555555
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=63.18 E-value=41 Score=29.47 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 039157 13 GIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNP 49 (207)
Q Consensus 13 ~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p 49 (207)
+++..||..||+..|+.- +.++...+|
T Consensus 40 qLal~YL~~gd~~~A~~n----------lekAL~~DP 66 (250)
T COG3063 40 QLALGYLQQGDYAQAKKN----------LEKALEHDP 66 (250)
T ss_pred HHHHHHHHCCCHHHHHHH----------HHHHHHhCc
Confidence 889999999999999999 899999999
No 81
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=61.81 E-value=61 Score=24.58 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 039157 9 DAADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNP 49 (207)
Q Consensus 9 ~~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p 49 (207)
......++-++..|+++.|... +.++..++|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~----------~~~~l~~dP 93 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRL----------LQRALALDP 93 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHH----------HHHHHHHST
T ss_pred HHHHHHHHHHHhccCHHHHHHH----------HHHHHhcCC
Confidence 3455777778889999999999 888999999
No 82
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.82 E-value=45 Score=22.02 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHH
Q 039157 8 KDAADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNPNDIPGFGRYTASY 62 (207)
Q Consensus 8 ~~~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p~~~~~~~~~~~~~ 62 (207)
|+-..-+|.-++..||++.|+++ ......+.| ...++..+...+
T Consensus 1 Rd~lY~lAig~ykl~~Y~~A~~~----------~~~lL~~eP-~N~Qa~~L~~~i 44 (53)
T PF14853_consen 1 RDCLYYLAIGHYKLGEYEKARRY----------CDALLEIEP-DNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHH----------HHHHHHHTT-S-HHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhhhHHHHHHH----------HHHHHhhCC-CcHHHHHHHHHH
Confidence 34456788889999999999999 777888888 444444444433
No 83
>PRK05685 fliS flagellar protein FliS; Validated
Probab=59.76 E-value=76 Score=24.68 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcC
Q 039157 10 AADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLN 48 (207)
Q Consensus 10 ~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~ 48 (207)
+....|+.++..+|++.+.+.+.+..+++..+..+....
T Consensus 37 ~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e 75 (132)
T PRK05685 37 SFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDME 75 (132)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 555778899999999999999999888887776655443
No 84
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=56.57 E-value=21 Score=27.41 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCChh-----HHHHHHHHHHHHHHcCCh
Q 039157 89 TRVEEINKHYEVLSTLFQQPNMCSFVE-----VKNANKLVTEAWEVLSDA 133 (207)
Q Consensus 89 as~~eIk~aYrklal~~~HPDk~~~~~-----a~~~f~~i~~Ay~vLsd~ 133 (207)
.+..+++.+.|..-++ .|||.-.... .++.++.++.-.+.|..+
T Consensus 6 ~~~~~l~~aLr~Fy~~-VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFA-VHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhHHHHHHHHHHHHH-hCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 6678999999999999 9999755433 455588888877777654
No 85
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=56.19 E-value=67 Score=23.32 Aligned_cols=37 Identities=16% Similarity=0.023 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCCCCHH
Q 039157 10 AADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNPNDIPGFG 56 (207)
Q Consensus 10 ~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p~~~~~~~ 56 (207)
.....|+.++..|++++|.+. ++.....++...++..
T Consensus 24 ar~~lA~~~~~~g~~e~Al~~----------Ll~~v~~dr~~~~~~a 60 (90)
T PF14561_consen 24 ARYALADALLAAGDYEEALDQ----------LLELVRRDRDYEDDAA 60 (90)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH----------HHHHHCC-TTCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHH----------HHHHHHhCccccccHH
Confidence 445889999999999999888 6667777775545544
No 86
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=56.14 E-value=25 Score=19.73 Aligned_cols=31 Identities=29% Similarity=0.255 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 039157 9 DAADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNP 49 (207)
Q Consensus 9 ~~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p 49 (207)
+-+..++.-+...||++.|... +.++..++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~----------~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEY----------FEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHH----------HHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHH----------HHHHHhhCC
Confidence 3456788889999999999999 555555554
No 87
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=55.26 E-value=45 Score=24.10 Aligned_cols=61 Identities=10% Similarity=0.016 Sum_probs=40.8
Q ss_pred CCchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 72 KSWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 72 ~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
+|--.++|+.+. ++..||+.+-++.+++ +.--..++....++|..-..+.. ...|+..|..
T Consensus 3 RNIk~LfnfdPP-----AT~~EvrdAAlQfVRK-lSGtT~PS~~n~~AFe~AV~~ia----A~areLLDaL 63 (88)
T COG5552 3 RNIKELFNFDPP-----ATPVEVRDAALQFVRK-LSGTTHPSAANAEAFEAAVAEIA----ATARELLDAL 63 (88)
T ss_pred cchHHHhCCCCC-----CCcHHHHHHHHHHHHH-hcCCCCcchhhHHHHHHHHHHHH----HHHHHHHHhc
Confidence 345568899999 9999999998887777 75555555555666665444332 2345666654
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=54.00 E-value=1.3e+02 Score=28.32 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHhccC----CCchhhcCcccCC
Q 039157 9 DAADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNPNDIPGFGRYTASYLVHRLASET----KSWYGVLGLKEGR 84 (207)
Q Consensus 9 ~~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p~~~~~~~~~~~~~~v~~~a~~~----~d~Y~vLgv~~~~ 84 (207)
++..++-.+.|..|++..|... +..+-.++|+.-..+-+ ...++...+.+ .|+=.||.+.++
T Consensus 39 ekhlElGk~lla~~Q~sDALt~----------yHaAve~dp~~Y~aifr---RaT~yLAmGksk~al~Dl~rVlelKpD- 104 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTH----------YHAAVEGDPNNYQAIFR---RATVYLAMGKSKAALQDLSRVLELKPD- 104 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH----------HHHHHcCCchhHHHHHH---HHHHHhhhcCCccchhhHHHHHhcCcc-
Confidence 4566788888899999999888 88899999933211111 11233122222 288899999888
Q ss_pred CCCCCcHHHHHHHH--------------HHHhhccCCCCCCCChhHHHHHHHHHHHHH
Q 039157 85 GGGATRVEEINKHY--------------EVLSTLFQQPNMCSFVEVKNANKLVTEAWE 128 (207)
Q Consensus 85 ~~~~as~~eIk~aY--------------rklal~~~HPDk~~~~~a~~~f~~i~~Ay~ 128 (207)
....-|.+.- -+.+++ +.|..+....+.++...|.+-|.
T Consensus 105 ----F~~ARiQRg~vllK~Gele~A~~DF~~vl~-~~~s~~~~~eaqskl~~~~e~~~ 157 (504)
T KOG0624|consen 105 ----FMAARIQRGVVLLKQGELEQAEADFDQVLQ-HEPSNGLVLEAQSKLALIQEHWV 157 (504)
T ss_pred ----HHHHHHHhchhhhhcccHHHHHHHHHHHHh-cCCCcchhHHHHHHHHhHHHHHH
Confidence 5544443321 244555 56655555556666655555554
No 89
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=50.07 E-value=1.3e+02 Score=26.42 Aligned_cols=85 Identities=16% Similarity=0.250 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHhccCCCchhhcCcccCCCCCCC
Q 039157 10 AADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNPNDIPGFGRYTASYLVHRLASETKSWYGVLGLKEGRGGGAT 89 (207)
Q Consensus 10 ~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p~~~~~~~~~~~~~~v~~~a~~~~d~Y~vLgv~~~~~~~~a 89 (207)
.+...-+..+..|||.+|.+.+..+..++.. +.++..+-. +...-.+++. .
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~-----------l~~~~c~~~------L~~~L~e~~~------------~ 179 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQLLEE-----------LKGYSCVRH------LSSQLQETLE------------L 179 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-----------cccchHHHH------HhHHHHHHHH------------H
Confidence 3446667888899999998884444433321 222221111 1111113332 2
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCCh
Q 039157 90 RVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDA 133 (207)
Q Consensus 90 s~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~ 133 (207)
..+.+...+.+++.. +.| ..|..|.+||..|++.
T Consensus 180 i~~~ld~~l~~~~~~-Fd~---------~~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 180 IEEQLDSDLSKVCQD-FDP---------DKYSKVQEAYQLLGKT 213 (291)
T ss_pred HHHHHHHHHHHHHHh-CCH---------HHHHHHHHHHHHHhhh
Confidence 355677777777777 655 5688899999999854
No 90
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=45.94 E-value=39 Score=22.02 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 039157 9 DAADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNP 49 (207)
Q Consensus 9 ~~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p 49 (207)
+.+...+..++..|+++.|... ..++..++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~----------~~~ai~~~p 34 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEY----------FEKAIELDP 34 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHH----------HHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHH----------HHHHHHcCC
Confidence 4567889999999999999999 888999999
No 91
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=45.63 E-value=40 Score=28.28 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhh
Q 039157 89 TRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARR 135 (207)
Q Consensus 89 as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~k 135 (207)
|+.+||++|+.++..+ |-- .++.-..|..||+.+.=...
T Consensus 4 ASfeEIq~Arn~ll~~-y~g-------d~~~~~~IEaAYD~ILM~rL 42 (194)
T PF11833_consen 4 ASFEEIQAARNRLLAQ-YAG-------DEKSREAIEAAYDAILMERL 42 (194)
T ss_pred CCHHHHHHHHHHHHHH-hcC-------CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 622 25667789999988764433
No 92
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=45.15 E-value=55 Score=30.66 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCC-CCCCCHHHHHHHHHHHH------------------------
Q 039157 12 DGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNP-NDIPGFGRYTASYLVHR------------------------ 66 (207)
Q Consensus 12 ~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p-~~~~~~~~~~~~~~v~~------------------------ 66 (207)
++...+||..|.|+.|.++ +.++..++| +..-.+.+.++-+.+.+
T Consensus 101 KE~GN~yFKQgKy~EAIDC----------Ys~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSR 170 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDC----------YSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSR 170 (536)
T ss_pred HHhhhhhhhccchhHHHHH----------hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 4566789999999999999 899999999 33333333332221110
Q ss_pred -H---------hccCCCchhhcCcccCCCCCCCcHHHHHHHHHHHhhc
Q 039157 67 -L---------ASETKSWYGVLGLKEGRGGGATRVEEINKHYEVLSTL 104 (207)
Q Consensus 67 -~---------a~~~~d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~ 104 (207)
. ....+||=.||.|.+. ..|+|+.|..+.-.
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~-------~~ELkK~~a~i~Sl 211 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALEPK-------NIELKKSLARINSL 211 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhCcc-------cHHHHHHHHHhcch
Confidence 0 1112388899999988 67899998766543
No 93
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=44.63 E-value=21 Score=17.23 Aligned_cols=13 Identities=38% Similarity=0.381 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHcC
Q 039157 119 ANKLVTEAWEVLS 131 (207)
Q Consensus 119 ~f~~i~~Ay~vLs 131 (207)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4778888888774
No 94
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=43.82 E-value=53 Score=17.87 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 039157 11 ADGIAKEYLIDKDTEACRDTL 31 (207)
Q Consensus 11 ~~~~a~~~~~~~d~~~a~~~l 31 (207)
...+|.-+...|+++.|.+.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~ 23 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYF 23 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHH
Confidence 346788888899999999993
No 95
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=41.61 E-value=2.2e+02 Score=24.22 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=18.1
Q ss_pred cHHHHH---HHHHHHhhccCCCCCCCChhHHHHHHHH
Q 039157 90 RVEEIN---KHYEVLSTLFQQPNMCSFVEVKNANKLV 123 (207)
Q Consensus 90 s~~eIk---~aYrklal~~~HPDk~~~~~a~~~f~~i 123 (207)
+....+ ..+.++..+ +||..-.+.+......|
T Consensus 136 D~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 136 DPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFL 170 (243)
T ss_pred CHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHH
Confidence 455556 456677776 78765554444443333
No 96
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.62 E-value=1.3e+02 Score=26.18 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCCCC
Q 039157 10 AADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNPNDIPG 54 (207)
Q Consensus 10 ~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p~~~~~ 54 (207)
+++.-..+.|..|+|++|..- +..|..++| ++..
T Consensus 97 ~lK~EGN~~F~ngdyeeA~sk----------Y~~Ale~cp-~~~~ 130 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSK----------YQEALESCP-STST 130 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHH----------HHHHHHhCc-cccH
Confidence 344555678999999999887 888888888 4443
No 97
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=35.20 E-value=1.6e+02 Score=21.44 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHhHHHHHH
Q 039157 5 LAYKDAADGIAKEYLIDKDTEACRDTLR---AIVAVLHDTNK 43 (207)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~d~~~a~~~l~---~~~~~l~d~~~ 43 (207)
--+.||-..+|...+..||--.|..||+ .+..+|.++..
T Consensus 36 ~ql~EKY~~LArDA~ssGDrV~aEny~QHAeHY~Ril~~~~~ 77 (80)
T PF13763_consen 36 QQLIEKYNQLARDAQSSGDRVLAENYLQHAEHYFRILAAAQA 77 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999998888876 45555555443
No 98
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=35.01 E-value=2.1e+02 Score=21.99 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcC
Q 039157 9 DAADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLN 48 (207)
Q Consensus 9 ~~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~ 48 (207)
.+....|+.++..+|++.+...+.+..+++..+..+....
T Consensus 32 i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e 71 (124)
T TIGR00208 32 LKFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDRE 71 (124)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 3556888999999999999999998888887766655433
No 99
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.73 E-value=55 Score=25.88 Aligned_cols=34 Identities=29% Similarity=0.291 Sum_probs=28.2
Q ss_pred chhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCC
Q 039157 74 WYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSF 113 (207)
Q Consensus 74 ~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~ 113 (207)
--.||+|+.. .+.++|.+.|..|-.. ..+.|..+
T Consensus 61 a~qILnV~~~-----ln~eei~k~yehLFev-NdkskGGS 94 (132)
T KOG3442|consen 61 AQQILNVKEP-----LNREEIEKRYEHLFEV-NDKSKGGS 94 (132)
T ss_pred HhhHhCCCCC-----CCHHHHHHHHHHHHhc-cCcccCcc
Confidence 3579999998 9999999999999888 65655544
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.37 E-value=2.6e+02 Score=27.26 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH
Q 039157 8 KDAADGIAKEYLIDKDTEACRDT 30 (207)
Q Consensus 8 ~~~~~~~a~~~~~~~d~~~a~~~ 30 (207)
++..+.....+|..|||..|.++
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHH
Confidence 44455667788999999988887
No 101
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=32.32 E-value=82 Score=20.21 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 039157 13 GIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNP 49 (207)
Q Consensus 13 ~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p 49 (207)
..|..++..|+++.|... +......+|
T Consensus 2 ~~a~~~~~~g~~~~A~~~----------~~~~l~~~P 28 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAA----------FEQALKQDP 28 (65)
T ss_dssp HHHHHHHHCTHHHHHHHH----------HHHHHCCST
T ss_pred hHHHHHHHcCCHHHHHHH----------HHHHHHHCC
Confidence 467889999999999999 778888888
No 102
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=31.96 E-value=2e+02 Score=20.81 Aligned_cols=44 Identities=9% Similarity=-0.155 Sum_probs=31.8
Q ss_pred hhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHH
Q 039157 75 YGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVT 124 (207)
Q Consensus 75 Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~ 124 (207)
-.+.|+.|. ++.+||+.+=.+.+++ ..--..++....++|..-.
T Consensus 6 ~~L~~fePp-----aT~~EI~aAAlQyVRK-vSG~~~Ps~an~eaF~~AV 49 (78)
T PF10041_consen 6 KTLRNFEPP-----ATDEEIRAAALQYVRK-VSGFRKPSAANAEAFDRAV 49 (78)
T ss_pred hhhcCCCCC-----CCHHHHHHHHHHHHHH-HccCCCcchhhHHHHHHHH
Confidence 345678888 9999999999888888 7655555555566665433
No 103
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=31.43 E-value=3.6e+02 Score=24.02 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHH
Q 039157 10 AADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNPNDIPGFGRYTASY 62 (207)
Q Consensus 10 ~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p~~~~~~~~~~~~~ 62 (207)
.+.+.+|.++..++++.+.+. ....-.++|-+.+...+++.++
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~----------l~~Li~~dp~~E~~~~~lm~~y 197 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEH----------LERLIELDPYDEPAYLRLMEAY 197 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHH----------HHHHHhcCccchHHHHHHHHHH
Confidence 455788999999999999888 6666777884444444444443
No 104
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=30.95 E-value=1.2e+02 Score=24.00 Aligned_cols=41 Identities=17% Similarity=0.055 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHH
Q 039157 9 DAADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNPNDIPGFGRYTA 60 (207)
Q Consensus 9 ~~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p~~~~~~~~~~~ 60 (207)
++..+.|++.+..||+.-|..+ +......+| ....+..+.+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L----------~d~l~~adp-~n~~ar~l~A 111 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAEL----------LDHLVFADP-DNEEARQLKA 111 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHH----------HHHHHHH-T-T-HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHH----------HHHHHHcCC-CcHHHHHHHH
Confidence 4556888999999999999888 666777888 4344444443
No 105
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=30.88 E-value=1.1e+02 Score=17.41 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhHHH
Q 039157 11 ADGIAKEYLIDKDTEACRDTLRAIVAVLHD 40 (207)
Q Consensus 11 ~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d 40 (207)
...+|.-+...|+++.|..++++.+.+...
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 346788899999999999997666555443
No 106
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.09 E-value=91 Score=26.61 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 039157 11 ADGIAKEYLIDKDTEACRDTLRAI 34 (207)
Q Consensus 11 ~~~~a~~~~~~~d~~~a~~~l~~~ 34 (207)
..++|++|+..||++.|.++|+.+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 449999999999999999995554
No 107
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=29.85 E-value=72 Score=20.55 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 039157 11 ADGIAKEYLIDKDTEACRDT 30 (207)
Q Consensus 11 ~~~~a~~~~~~~d~~~a~~~ 30 (207)
...+|+-++..|+++.|+..
T Consensus 28 ~~~la~~~~~~g~~~~A~~~ 47 (68)
T PF14559_consen 28 RLLLAQCYLKQGQYDEAEEL 47 (68)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 34677777777777777777
No 108
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=28.79 E-value=59 Score=21.86 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=22.5
Q ss_pred CchhhcCcccCCCCCCCcHHHHHHHHHHHhhccCCCCCC
Q 039157 73 SWYGVLGLKEGRGGGATRVEEINKHYEVLSTLFQQPNMC 111 (207)
Q Consensus 73 d~Y~vLgv~~~~~~~~as~~eIk~aYrklal~~~HPDk~ 111 (207)
-||+||+++.- .+|=|..|-+-.+- ||+..
T Consensus 12 AFY~vl~~~nL-------teeQrn~yI~~lKd--dPs~s 41 (54)
T PF02216_consen 12 AFYEVLHMPNL-------TEEQRNGYIQSLKD--DPSRS 41 (54)
T ss_dssp HHHHHHCSTTS--------HHHHHHHHHHHHH---GCCH
T ss_pred HHHHHHcCCCc-------CHHHHHhHHHHHhh--ChHHH
Confidence 48999999887 67778899776666 88864
No 109
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=28.74 E-value=1.2e+02 Score=19.47 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=30.0
Q ss_pred HHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 96 KHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 96 ~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
+.+++..+. -||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 13 ~~~~~~~~~-~~~~~~----~~~i~~~~~~~W~~l~~~~k~~y~~~a 54 (66)
T cd00084 13 QEHRAEVKA-ENPGLS----VGEISKILGEMWKSLSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHH-HCcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445555666 688733 567889999999999987766655543
No 110
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=28.24 E-value=64 Score=23.16 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=19.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcC
Q 039157 14 IAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLN 48 (207)
Q Consensus 14 ~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~ 48 (207)
.++++...||+++|++. ..+++.+.
T Consensus 43 kv~~~~~~Gd~~~A~~a----------S~~Ak~~~ 67 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRA----------SRKAKKWS 67 (82)
T ss_pred hhHHHHHCCCHHHHHHH----------HHHhHHHH
Confidence 46788899999999998 66666554
No 111
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=28.00 E-value=86 Score=15.39 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 039157 11 ADGIAKEYLIDKDTEACRDT 30 (207)
Q Consensus 11 ~~~~a~~~~~~~d~~~a~~~ 30 (207)
...++.-++..++++.|...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~ 23 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEY 23 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34667788888999999888
No 112
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=27.70 E-value=1.2e+02 Score=19.61 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=27.7
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 99 EVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 99 rklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
|...+. -||+. ...+..+.|.+.|..|++.++....+..
T Consensus 16 r~~~~~-~~p~~----~~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 16 RPKLKK-ENPDA----SVTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHH-HCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344445 68873 2578899999999999987776655543
No 113
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=27.23 E-value=88 Score=21.26 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=29.8
Q ss_pred HHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 97 HYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 97 aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
..|..... -||+. ...+..+.|.+.|..|++.++...+|..
T Consensus 15 ~~r~~~~~-~~p~~----~~~eisk~l~~~Wk~ls~~eK~~y~~~a 55 (72)
T cd01388 15 RHRRKVLQ-EYPLK----ENRAISKILGDRWKALSNEEKQPYYEEA 55 (72)
T ss_pred HHHHHHHH-HCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555 68874 2468889999999999988887666544
No 114
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.75 E-value=1.6e+02 Score=25.71 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=49.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHH-HhccCCCchhhcCcccCCCCCCCcHHHHH
Q 039157 17 EYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNPNDIPGFGRYTASYLVHR-LASETKSWYGVLGLKEGRGGGATRVEEIN 95 (207)
Q Consensus 17 ~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p~~~~~~~~~~~~~~v~~-~a~~~~d~Y~vLgv~~~~~~~~as~~eIk 95 (207)
..+.-.+-..|+--|++....+.|..++..|+|+-...+.+-..++.... .-..-.||-.||.+.|. ..+.+
T Consensus 133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs-------~~ear 205 (271)
T KOG4234|consen 133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPS-------RREAR 205 (271)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc-------hHHHH
Confidence 33455666778888889999999999999999944333333222221110 00011288999999998 44666
Q ss_pred HHHHHHhh
Q 039157 96 KHYEVLST 103 (207)
Q Consensus 96 ~aYrklal 103 (207)
++.++|-.
T Consensus 206 ~~i~rl~~ 213 (271)
T KOG4234|consen 206 EAIARLPP 213 (271)
T ss_pred HHHHhcCH
Confidence 65555433
No 115
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.60 E-value=3.3e+02 Score=23.69 Aligned_cols=33 Identities=6% Similarity=-0.059 Sum_probs=23.3
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhHHHHHHHhhcCCC
Q 039157 8 KDAADGIAKEY-LIDKDTEACRDTLRAIVAVLHDTNKNKNLNPN 50 (207)
Q Consensus 8 ~~~~~~~a~~~-~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p~ 50 (207)
.....+.|... +..|+++.|... ..+-...+|+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~a----------f~~fl~~yP~ 175 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVA----------FQNFVKKYPD 175 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH----------HHHHHHHCcC
Confidence 45667788776 557899999877 5555666773
No 116
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.54 E-value=1.7e+02 Score=28.67 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCCCCHH
Q 039157 5 LAYKDAADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNPNDIPGFG 56 (207)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p~~~~~~~ 56 (207)
+.|+-..+..-.++|..|.|+.|.++ +..+-.++| ..+-+-
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIky----------Y~~AI~l~p-~epiFY 152 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKY----------YTQAIELCP-DEPIFY 152 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHH----------HHHHHhcCC-CCchhh
Confidence 45666777888999999999999999 999999999 434433
No 117
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.34 E-value=5.9e+02 Score=24.68 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 039157 13 GIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNP 49 (207)
Q Consensus 13 ~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p 49 (207)
.--++....||+..|++.|..+..-+..+.....--|
T Consensus 178 ~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP 214 (560)
T PF06160_consen 178 SEFEELTENGDYLEAREILEKLKEETDELEEIMEDIP 214 (560)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4456777899999999998887777777666666666
No 118
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=24.16 E-value=1.6e+02 Score=20.13 Aligned_cols=43 Identities=9% Similarity=0.206 Sum_probs=31.4
Q ss_pred HHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 95 NKHYEVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 95 k~aYrklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
.+.++..++. -||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 13 ~~~~r~~~~~-~~p~~~----~~eisk~~g~~Wk~ls~eeK~~y~~~A 55 (77)
T cd01389 13 RQDKHAQLKT-ENPGLT----NNEISRIIGRMWRSESPEVKAYYKELA 55 (77)
T ss_pred HHHHHHHHHH-HCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 4455667777 788763 468889999999999987776555543
No 119
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.60 E-value=2.1e+02 Score=25.73 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhHHHH-HHHhhcCCCCCCCHHHHHHHHHHHHHhccC----CCchhhcCcccCCCCC
Q 039157 13 GIAKEYLIDKDTEACRDTLRAIVAVLHDT-NKNKNLNPNDIPGFGRYTASYLVHRLASET----KSWYGVLGLKEGRGGG 87 (207)
Q Consensus 13 ~~a~~~~~~~d~~~a~~~l~~~~~~l~d~-~~a~~l~p~~~~~~~~~~~~~~v~~~a~~~----~d~Y~vLgv~~~~~~~ 87 (207)
+...+.|..|+|..|..-.|..+.||..+ .+-+.-.| ..-.++++...+... + +++ .|||+||.-...
T Consensus 183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~-eW~eLdk~~tpLllN-y-~QC~L~~~e~yevleh~se---- 255 (329)
T KOG0545|consen 183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP-EWLELDKMITPLLLN-Y-CQCLLKKEEYYEVLEHCSE---- 255 (329)
T ss_pred HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh-HHHHHHHhhhHHHHh-H-HHHHhhHHHHHHHHHHHHH----
Confidence 44567889999999988878777777663 33333333 222334444433222 1 111 289988763221
Q ss_pred CC--cHHHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHH
Q 039157 88 AT--RVEEINKHYEVLSTLFQQPNMCSFVEVKNANKLVTE 125 (207)
Q Consensus 88 ~a--s~~eIk~aYrklal~~~HPDk~~~~~a~~~f~~i~~ 125 (207)
. -...+-|||-+.++. |-.-.....|.+-|+.+-+
T Consensus 256 -iL~~~~~nvKA~frRakA--haa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 256 -ILRHHPGNVKAYFRRAKA--HAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred -HHhcCCchHHHHHHHHHH--HHhhcCHHHHHHHHHHHHh
Confidence 0 012255667666666 4443333445666666543
No 120
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=22.88 E-value=3.4e+02 Score=20.44 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 039157 10 AADGIAKEYLIDKDTEACRDTLRAIVAVLHDTNKNKNLNP 49 (207)
Q Consensus 10 ~~~~~a~~~~~~~d~~~a~~~l~~~~~~l~d~~~a~~l~p 49 (207)
+....|...+..||++...+.+.+...++..+.. .|++
T Consensus 31 ~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~--~Ld~ 68 (122)
T PF02561_consen 31 EFLKQAKEAIEQGDIEEKNEALQKAQDIITELQS--SLDF 68 (122)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH--TCCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh--hcCC
Confidence 5557888899999999999999988888887655 4555
No 121
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=20.19 E-value=99 Score=28.23 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=31.5
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHHHHHcCChhhHHHHhhh
Q 039157 99 EVLSTLFQQPNMCSFVEVKNANKLVTEAWEVLSDARRKEAYDLL 142 (207)
Q Consensus 99 rklal~~~HPDk~~~~~a~~~f~~i~~Ay~vLsd~~kR~~YD~~ 142 (207)
|||+.. .||.+. .|..|.|-.-|..|++.+||-.+|.-
T Consensus 79 Rkma~q--nP~mHN----SEISK~LG~~WK~Lse~EKrPFi~EA 116 (331)
T KOG0527|consen 79 RKLAKQ--NPKMHN----SEISKRLGAEWKLLSEEEKRPFVDEA 116 (331)
T ss_pred HHHHHh--Ccchhh----HHHHHHHHHHHhhcCHhhhccHHHHH
Confidence 455555 788753 58999999999999999999999966
Done!