BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039158
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 56 KQQSFHGVTIDKQLSTCDGKTGRKKNKDLPGKRSHLQLHLPARTGNLSRVTEILQGCDSS 115
+Q H I Q + G + +L R + LHL G L+ V + Q C +
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 116 EAKELLLKQNQEAKNGYDSFHAAA 139
+L N NG+ H A+
Sbjct: 105 HLHSILKATN---YNGHTCLHLAS 125
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 56 KQQSFHGVTIDKQLSTCDGKTGRKKNKDLPGKRSHLQLHLPARTGNLSRVTEILQGCDSS 115
+Q H I Q + G + +L R + LHL G L+ V + Q C +
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 116 EAKELLLKQNQEAKNGYDSFHAAA 139
+L N NG+ H A+
Sbjct: 102 HLHSILKATN---YNGHTCLHLAS 122
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 87 KRSHLQLHLPARTGNLSRVTEILQGCDSSEAKELLLKQNQEAKNGYDSFHAAAK 140
K + LHL AR G+L V +L+ AK+ K+GY H AA+
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD---------KDGYTPLHLAAR 77
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 87 KRSHLQLHLPARTGNLSRVTEILQGCDSSEAKELLLKQNQEAKNGYDSFHAAAK 140
K + LHL AR G+L V +L+ AK+ K+GY H AA+
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD---------KDGYTPLHLAAR 110
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 87 KRSHLQLHLPARTGNLSRVTEILQGCDSSEAKELLLKQNQEAKNGYDSFHAAAK 140
K + LHL AR G+L V +L+ AK+ K+GY H AA+
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD---------KDGYTPLHLAAR 77
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 87 KRSHLQLHLPARTGNLSRVTEILQGCDSSEAKELLLKQNQEAKNGYDSFHAAAK 140
K + LHL AR G+L V +L+ AK+ K+GY H AA+
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD---------KDGYTPLHLAAR 110
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 87 KRSHLQLHLPARTGNLSRVTEILQGCDSSEAKELLLKQNQEAKNGYDSFHAAAK 140
K + LHL AR G+L V +L+ AK+ K+GY H AA+
Sbjct: 45 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD---------KDGYTPLHLAAR 89
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 87 KRSHLQLHLPARTGNLSRVTEILQGCDSSEAKELLLKQNQEAKNGYDSFHAAAK 140
K + LHL AR G+L V +L+ AK+ K+GY H AA+
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD---------KDGYTPLHLAAR 122
>pdb|1WTJ|A Chain A, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Pvar.Tomato
pdb|1WTJ|B Chain B, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Pvar.Tomato
pdb|2CWF|A Chain A, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
pdb|2CWF|B Chain B, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
pdb|2CWH|A Chain A, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
And Pyrrole-2-Carboxylate
pdb|2CWH|B Chain B, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
And Pyrrole-2-Carboxylate
Length = 343
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 30 QRVMEEQQSFHGVSTNKLPSARGVIEKQQSF-HGVTI 65
QR E + HGV +LP R +E+ +S HG+ I
Sbjct: 293 QRSEELVRQLHGVGQERLPGDRRYLERARSMAHGIVI 329
>pdb|1RCW|A Chain A, Crystal Structure Of Ct610 From Chlamydia Trachomatis
pdb|1RCW|B Chain B, Crystal Structure Of Ct610 From Chlamydia Trachomatis
pdb|1RCW|C Chain C, Crystal Structure Of Ct610 From Chlamydia Trachomatis
Length = 231
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 93 LHLPARTGNLSRVTEILQGCDSSEAKELLLKQNQEAKNGY 132
LH+ A LS + CD EA++LLL + +NGY
Sbjct: 49 LHIKAFPKYLSAIH---SRCDDLEARKLLLDNLXDEENGY 85
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate
Length = 297
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 26 QPSIQRVMEEQQSFHGVSTNKLPSARGVIEKQQSFHGVTIDKQLSTCDGKTG 77
QP + R++E Q G +L A + Q FHGVT C K G
Sbjct: 219 QPEVMRILENQGKGAG-GEIQLTDAMQRMIGDQPFHGVTFQGTRYDCGDKAG 269
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 93 LHLPARTGNLSRVTEILQGCDSSEAKELLLKQNQEAKNGYDSFHAAAK 140
LHL AR G+L V +L+ AK+ KNG H AA+
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKD---------KNGRTPLHLAAR 77
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 93 LHLPARTGNLSRVTEILQGCDSSEAKELLLKQNQEAKNGYDSFHAAAK 140
LHL AR G+L V +L+ AK+ KNG H AA+
Sbjct: 72 LHLAARNGHLEVVKLLLEAGADVNAKD---------KNGRTPLHLAAR 110
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 93 LHLPARTGNLSRVTEILQGCDSSEAKELLLKQNQEAKNGYDSFHAAAK 140
LHL AR G+L V +L+ AK+ KNG H AA+
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKD---------KNGRTPLHLAAR 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.125 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,899,236
Number of Sequences: 62578
Number of extensions: 139109
Number of successful extensions: 259
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 24
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)