BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039158
         (140 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana
           GN=At5g02620 PE=1 SV=1
          Length = 524

 Score = 35.8 bits (81), Expect = 0.086,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 32/95 (33%)

Query: 78  RKKNKDLPGKRSHLQLHLPARTGNLSRVTEILQGCDSSEAKELLLKQNQ----------- 126
           +   K +  +R    LH   R G    + E++   D  E KELL +QNQ           
Sbjct: 6   KTMTKQMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAE 65

Query: 127 ---------------------EAKNGYDSFHAAAK 140
                                +AKNG+D+FH AAK
Sbjct: 66  YGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAK 100


>sp|P62296|ASPM_SAIBB Abnormal spindle-like microcephaly-associated protein homolog
            OS=Saimiri boliviensis boliviensis GN=ASPM PE=2 SV=1
          Length = 3469

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 4    QSSFRTWTME-KQQSICSVTFEKQPSIQRVMEEQQSFHGVSTNKLPSARGVIEKQQSFHG 62
            QS+FR ++   K QS+     +    IQR     ++ HG+ T+ L +   VI  Q ++ G
Sbjct: 1823 QSAFRGYSKRVKYQSVLQSIIK----IQRWYRAYKTLHGIRTHFLKTKAAVISLQSAYRG 1878

Query: 63   VTIDKQL 69
              + KQ+
Sbjct: 1879 WKVRKQI 1885


>sp|A6NHY2|AKD1B_HUMAN Ankyrin repeat and death domain-containing protein 1B OS=Homo
           sapiens GN=ANKDD1B PE=4 SV=2
          Length = 467

 Score = 30.4 bits (67), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 56  KQQSFHGVTIDKQLSTCDGKTGRKKNKDLPGKRSHLQLHLPARTGNLSRVTEILQ-GCD 113
           K+   H V I+  ++  +     + + D+  ++    LH+ A  GN+  V  +L+ GCD
Sbjct: 240 KESPLHLVVINNHITVVNSLLSAQHDIDILNQKQQTPLHVAADRGNVELVETLLKAGCD 298


>sp|A4YEN2|MCR_METS5 Malonyl CoA reductase (NADP) OS=Metallosphaera sedula (strain ATCC
           51363 / DSM 5348) GN=Msed_0709 PE=1 SV=1
          Length = 357

 Score = 30.4 bits (67), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 5   SSFRTWTMEKQQSICSVTFEKQPSIQRVMEEQQSFHGVSTN-KLPSA 50
           ++ R  T+     +  VTF++   +++VME  +SF G   + KLP+A
Sbjct: 235 TTHRIATIHGHYEVAYVTFKEDTDVRKVMESMESFKGEPQDLKLPTA 281


>sp|P25963|IKBA_HUMAN NF-kappa-B inhibitor alpha OS=Homo sapiens GN=NFKBIA PE=1 SV=1
          Length = 317

 Score = 28.9 bits (63), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 56  KQQSFHGVTIDKQLSTCDGKTGRKKNKDLPGKRSHLQLHLPARTGNLSRVTEILQGCDSS 115
           +Q   H   I  Q    +   G   + +L   R +  LHL    G L+ V  + Q C + 
Sbjct: 111 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 170

Query: 116 EAKELLLKQNQEAKNGYDSFHAAA 139
               +L   N    NG+   H A+
Sbjct: 171 HLHSILKATN---YNGHTCLHLAS 191


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.125    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,006,873
Number of Sequences: 539616
Number of extensions: 1885613
Number of successful extensions: 3808
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3797
Number of HSP's gapped (non-prelim): 25
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)