BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039161
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 143/339 (42%), Gaps = 67/339 (19%)
Query: 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEV------- 57
+EL++LHL N L G I ++ + S LR L L+ N LEG +P+ L LE
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 58 -----------------VNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF 100
+++ NN ++ P W+G L L IL L +N F + NI
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-----SGNIPA 532
Query: 101 PF---QALRIIDLSHTEFTGFLP------------------RRIFPSMEAMKN------- 132
++L +DL+ F G +P R ++ + MK
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 133 -VDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIF-----VMFRAMDFSSNRFHGEISE 185
++ QG R E + R + + + F +MF +D S N G I +
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPK 650
Query: 186 VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXX 245
+G+ L +LNL HN ++G+IP ++ L LDLS NKLDGRIP+
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 246 XXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC 284
N L G IP QF TF ++ N LCG PL RC
Sbjct: 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC 748
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 119/300 (39%), Gaps = 53/300 (17%)
Query: 10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF 69
L + N L G + + L+ L++ SN+ GP+P K L+ +++ N +
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAENKFTGEI 285
Query: 70 PCWM-GSLSELKILVLRSNQF--DCPP---------------------CNSNITFPFQAL 105
P ++ G+ L L L N F PP + + L
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 106 RIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ---- 161
+++DLS EF+G LP E++ N+ +T+ + ++F
Sbjct: 346 KVLDLSFNEFSGELP-------ESLTNLSAS-------------LLTLDLSSNNFSGPIL 385
Query: 162 ---LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE 218
QN + + +N F G+I L N L L+LS N L+G IP S +++ L
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 219 SLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGE 278
L L N L+G IP++ +N L G IP G T N + N RL GE
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 28/227 (12%)
Query: 12 LENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLP--RSLAKYIKLEVVNVENNMISDSF 69
L N+ + G + F ++ L SLDL N L GP+ SL L+ +NV +N + F
Sbjct: 84 LSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DF 140
Query: 70 PCWMGS---LSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPS 126
P + L+ L++L L +N +N+ + +L H +G +I
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSIS----GANVVGWVLSDGCGELKHLAISG---NKISGD 193
Query: 127 MEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEV 186
++ + V+ LE++ + + S + G LQ+ +D S N+ G+ S
Sbjct: 194 VDVSRCVN----LEFLDVSSNNFSTGIPFLGDCSALQH-------LDISGNKLSGDFSRA 242
Query: 187 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233
+ LK+LN+S N G IP + +L+ L L+ NK G IP+
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPD 287
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 143/339 (42%), Gaps = 67/339 (19%)
Query: 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEV------- 57
+EL++LHL N L G I ++ + S LR L L+ N LEG +P+ L LE
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 58 -----------------VNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITF 100
+++ NN ++ P W+G L L IL L +N F + NI
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-----SGNIPA 529
Query: 101 PF---QALRIIDLSHTEFTGFLP------------------RRIFPSMEAMKN------- 132
++L +DL+ F G +P R ++ + MK
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 133 -VDEQG-RLEYMGRAFCDESITVAMKGHDFQLQNIF-----VMFRAMDFSSNRFHGEISE 185
++ QG R E + R + + + F +MF +D S N G I +
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPK 647
Query: 186 VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXX 245
+G+ L +LNL HN ++G+IP ++ L LDLS NKLDGRIP+
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 246 XXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC 284
N L G IP QF TF ++ N LCG PL RC
Sbjct: 708 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC 745
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 119/300 (39%), Gaps = 53/300 (17%)
Query: 10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF 69
L + N L G + + L+ L++ SN+ GP+P K L+ +++ N +
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAENKFTGEI 282
Query: 70 PCWM-GSLSELKILVLRSNQF--DCPP---------------------CNSNITFPFQAL 105
P ++ G+ L L L N F PP + + L
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 106 RIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ---- 161
+++DLS EF+G LP E++ N+ +T+ + ++F
Sbjct: 343 KVLDLSFNEFSGELP-------ESLTNLSAS-------------LLTLDLSSNNFSGPIL 382
Query: 162 ---LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE 218
QN + + +N F G+I L N L L+LS N L+G IP S +++ L
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 219 SLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGE 278
L L N L+G IP++ +N L G IP G T N + N RL GE
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 28/227 (12%)
Query: 12 LENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLP--RSLAKYIKLEVVNVENNMISDSF 69
L N+ + G + F ++ L SLDL N L GP+ SL L+ +NV +N + F
Sbjct: 81 LSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DF 137
Query: 70 PCWMGS---LSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPS 126
P + L+ L++L L +N +N+ + +L H +G +I
Sbjct: 138 PGKVSGGLKLNSLEVLDLSANSIS----GANVVGWVLSDGCGELKHLAISG---NKISGD 190
Query: 127 MEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEV 186
++ + V+ LE++ + + S + G LQ+ +D S N+ G+ S
Sbjct: 191 VDVSRCVN----LEFLDVSSNNFSTGIPFLGDCSALQH-------LDISGNKLSGDFSRA 239
Query: 187 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233
+ LK+LN+S N G IP + +L+ L L+ NK G IP+
Sbjct: 240 ISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPD 284
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 112/284 (39%), Gaps = 66/284 (23%)
Query: 21 IHNTFANASHLRSLDLYS-NKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSEL 79
I ++ AN +L L + N L GP+P ++AK +L + + + +S + P + LS++
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF---LSQI 124
Query: 80 KILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRL 139
K LV +D S+ +G LP PS+ ++ N+
Sbjct: 125 KTLV-----------------------TLDFSYNALSGTLP----PSISSLPNL------ 151
Query: 140 EYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLS 199
+G F I+ A+ +F +M S NR G+I N +L ++LS
Sbjct: 152 --VGITFDGNRISGAIPDSYGSFSKLFT---SMTISRNRLTGKIPPTFANL-NLAFVDLS 205
Query: 200 HNSLTGNIPVSF------------ENMTA-----------LESLDLSFNKLDGRIPEQXX 236
N L G+ V F +N A L LDL N++ G +P+
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 237 XXXXXXXXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPL 280
+N L G IP+G F +Y N LCG PL
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 1 GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEG 43
GSFS ++ + N L G I TFAN +L +DL N LEG
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS 66
L+ L L+ N L G N F ASH++ L L NK++ + +L+ +N+ +N IS
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 67 DSFPCWMGSLSELKILVLRSNQFDC 91
P L+ L L L SN F+C
Sbjct: 116 CVMPGSFEHLNSLTSLNLASNPFNC 140
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 190 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 225
LK LNL N ++ +P SFE++ +L SL+L+ N
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 181 GEISE--VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
G IS + G L L L N LTG P +FE + ++ L L NK+
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
T+L L L N L+ F + L+ L LY+N+L+ + K +L+ + ++NN
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 65 ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNI 98
+ SL +LK+L L+ N +DC CN I
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQENPWDC-TCNGII 225
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 77 SELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNV-DE 135
++ K L L+SN+ P S LR++ L+ + LP IF ++ ++ +
Sbjct: 37 ADTKKLDLQSNKLSSLP--SKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVT 93
Query: 136 QGRLEYMGRAFCDESITVA-MKGHDFQLQNI-------FVMFRAMDFSSNRFHGEISEVL 187
+L+ + D+ + +A ++ QL+++ + N V
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Query: 188 GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233
SLK L L +N L +F+ +T L++L L N+L R+PE
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPE 198
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 187 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 229
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 187 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 229
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 187 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 229
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 187 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 229
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 187 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 229
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 187 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 229
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 102 FQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVD---EQGRLEYMGRAFCDESITV-AMKG 157
+ L +D H+ +F S+ + +D R+ + G S+ V M G
Sbjct: 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478
Query: 158 HDFQ---LQNIFVMFRAM---DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSF 211
+ FQ L +IF R + D S + + SL+VLN+SHN+ +
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538
Query: 212 ENMTALESLDLSFNKL 227
+ + +L+ LD S N +
Sbjct: 539 KCLNSLQVLDYSLNHI 554
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 187 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKLDG 229
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 103 QALRIIDLSHTEFTGFLPRRIFPSMEAMKNVD---EQGRLEYMGRAFCDESITV-AMKGH 158
+ L +D H+ +F S+ + +D R+ + G S+ V M G+
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 159 DFQ---LQNIFVMFRAM---DFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFE 212
FQ L +IF R + D S + + SL+VLN+SHN+ ++
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515
Query: 213 NMTALESLDLSFNKL 227
+ +L+ LD S N +
Sbjct: 516 CLNSLQVLDYSLNHI 530
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 187 LGNFKSLKVLNLSHNSLTG-NIPVSFENMTALESLDLSFNKL 227
+G+ K+LK LN++HN + +P F N+T LE LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 5 TELITLHLENNSL-EGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
+ L L + NS E + + F +L LDL +LE P + L+V+N+ +N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 64 MISDSFPCWMGSLSELKILVLRSNQFDC 91
+ L+ L+ + L +N +DC
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDC 532
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 217
+ F L + R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 218 ESLDLSFNKL 227
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 217
+ F L + R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 218 ESLDLSFNKL 227
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 217
+ F L + R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 218 ESLDLSFNKL 227
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 217
+ F L + R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 45 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 103
Query: 218 ESLDLSFNKL 227
LD+SFN+L
Sbjct: 104 TVLDVSFNRL 113
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 217
+ F L + R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 218 ESLDLSFNKL 227
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 217
+ F L + R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 218 ESLDLSFNKL 227
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 217
+ F L + R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 218 ESLDLSFNKL 227
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 217
+ F L + R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 218 ESLDLSFNKL 227
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 217
+ F L + R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 218 ESLDLSFNKL 227
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 217
+ F L + R + +R +V G L L+LSHN L ++P+ + + AL
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102
Query: 218 ESLDLSFNKL 227
LD+SFN+L
Sbjct: 103 TVLDVSFNRL 112
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
S++ L++L++ +N L I ++ LDL+SNK++ +P+ + K L+ +NV
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVA 452
Query: 62 NNMISDSFPCWMGSLSELKILVLRSNQFDC 91
+N + L+ L+ + L +N +DC
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 45 LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPF-Q 103
+P+ L++ K ++N+ N IS+ + + SLS+L+IL++ N+ + F F Q
Sbjct: 15 VPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS---VFKFNQ 69
Query: 104 ALRIIDLSHTEFT 116
L +DLSH +
Sbjct: 70 ELEYLDLSHNKLV 82
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 169 FRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228
R + S NR V + L+ L+LSHN L + +S L+ LDLSFN D
Sbjct: 47 LRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAFD 103
Query: 229 G 229
Sbjct: 104 A 104
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/220 (19%), Positives = 94/220 (42%), Gaps = 31/220 (14%)
Query: 18 EGHIHNTFANASHLRSLDLYSNKLEGPL-PRSLAKYIKLEVVNVENNMISDSFPCWMGSL 76
+ +I+ F+N ++++ + ++ L P ++ ++ L+ NN+++D+ G L
Sbjct: 292 QSYIYEIFSNM-NIKNFTVSGTRMVHMLCPSKISPFLHLDF---SNNLLTDTVFENCGHL 347
Query: 77 SELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQ 136
+EL+ L+L+ NQ + +T ++L+ +D+S + DE+
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS----------------YDEK 391
Query: 137 GRLEYMGRAFCDESITVAMKGHDFQLQNIFVMF----RAMDFSSNRFHGEISEVLGNFKS 192
G +S+ + IF + +D SN+ I + + ++
Sbjct: 392 K-----GDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEA 445
Query: 193 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 232
L+ LN++ N L F+ +T+L+ + L N D P
Sbjct: 446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 169 FRAMDFSSNRFHGE--ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 226
+ +D S N S L N L+ LNLSHN G +F+ LE LDL+F +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 227 LDGRIPE 233
L P+
Sbjct: 409 LHINAPQ 415
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 25 FANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84
AN + L LD+ SNK+ LAK LE + NN ISD P +G L+ L L L
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228
Query: 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMK 131
NQ +++T L +DL++ + + P + +K
Sbjct: 229 NGNQLKDIGTLASLT----NLTDLDLANNQISNLAPLSGLTKLTELK 271
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 25 FANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84
AN + L LD+ SNK+ LAK LE + NN ISD P +G L+ L L L
Sbjct: 172 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 227
Query: 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMK 131
NQ +++T L +DL++ + + P + +K
Sbjct: 228 NGNQLKDIGTLASLT----NLTDLDLANNQISNLAPLSGLTKLTELK 270
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 25 FANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84
AN + L LD+ SNK+ LAK LE + NN ISD P +G L+ L L L
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 223
Query: 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMK 131
NQ +++T L +DL++ + + P + +K
Sbjct: 224 NGNQLKDIGTLASLT----NLTDLDLANNQISNLAPLSGLTKLTELK 266
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 25 FANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84
AN + L LD+ SNK+ LAK LE + NN ISD P +G L+ L L L
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 223
Query: 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMK 131
NQ +++T L +DL++ + + P + +K
Sbjct: 224 NGNQLKDIGTLASLT----NLTDLDLANNQISNLAPLSGLTKLTELK 266
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 25 FANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84
AN + L LD+ SNK+ LAK LE + NN ISD P +G L+ L L L
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMK 131
NQ +++T L +DL++ + + P + +K
Sbjct: 225 NGNQLKDIGTLASLT----NLTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD 221
L+N+ + R ++ SSN +IS + G SL+ L+ S N +T P++ N+T LE LD
Sbjct: 125 LKNLTNLNR-LELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKPLA--NLTTLERLD 179
Query: 222 LSFNKL 227
+S NK+
Sbjct: 180 ISSNKV 185
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 25 FANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84
AN + L LD+ SNK+ LAK LE + NN ISD P +G L+ L L L
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMK 131
NQ +++T L +DL++ + + P + +K
Sbjct: 225 NGNQLKDIGTLASLT----NLTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD 221
L+N+ + R ++ SSN +IS + G SL+ L+ S N +T P++ N+T LE LD
Sbjct: 125 LKNLTNLNR-LELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKPLA--NLTTLERLD 179
Query: 222 LSFNKL 227
+S NK+
Sbjct: 180 ISSNKV 185
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 25 FANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84
AN + L LD+ SNK+ LAK LE + NN ISD P +G L+ L L L
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMK 131
NQ +++T L +DL++ + + P + +K
Sbjct: 225 NGNQLKDIGTLASLT----NLTDLDLANNQISNLAPLSGLTKLTELK 267
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD 221
L+N+ + R ++ SSN +IS + G SL+ LN S N +T P++ N+T LE LD
Sbjct: 125 LKNLTNLNR-LELSSNTI-SDISALSG-LTSLQQLNFSSNQVTDLKPLA--NLTTLERLD 179
Query: 222 LSFNKL 227
+S NK+
Sbjct: 180 ISSNKV 185
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS 66
L L L NS+ + + AN HLR L L +NKL +P LA + ++VV + NN IS
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS 276
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF 69
L L+NN + F N +L +L L +NK+ P + A +KLE + + N + +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 70 PCWMGSLSELKI 81
+L EL++
Sbjct: 117 EKMPKTLQELRV 128
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS 66
L L L NS+ + + AN HLR L L +NKL +P LA + ++VV + NN IS
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS 276
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF 69
L L+NN + F N +L +L L +NK+ P + A +KLE + + N + +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 70 PCWMGSLSELKI 81
+L EL++
Sbjct: 117 EKMPKTLQELRV 128
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 169 FRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSF--ENMTALESLDLSFNK 226
F ++F+ N F + + K L+ L L N L V+ +NM++LE+LD+S N
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 227 LDG 229
L+
Sbjct: 415 LNS 417
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVE 61
+++ ++ L+L +N L G + ++ LDL++N++ +P+ + L+ +NV
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVA 481
Query: 62 NNMISDSFPCWMGSLSELKILVLRSNQFDC 91
+N + L+ L+ + L N +DC
Sbjct: 482 SNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 171 AMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 230
++ SSN G + L +KVL+L HN+ +IP ++ AL+ L+++ N+L
Sbjct: 432 VLNLSSNMLTGSVFRCLP--PKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKS- 487
Query: 231 IPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFQNDSYIGNIRLCG---EPLTVRCSND 287
+P+ ++ W G ++ + + + G +R P + +CS
Sbjct: 488 VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSGS 547
Query: 288 GLP 290
G P
Sbjct: 548 GKP 550
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 169 FRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228
R + S NR V + L+ L++SHN L +S M +L LDLSFN D
Sbjct: 78 LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFD 134
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 183 ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
+ + L N+K L +++LS+N ++ SF NMT L +L LS+N+L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 45 LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFP-FQ 103
+P+ L+ Y L ++++ NN IS ++++L L+L N+ C P TF +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR---TFDGLK 102
Query: 104 ALRIIDLSHTEFTGFLPRRIFPSMEAMKNV 133
+LR++ L H +P F + A+ ++
Sbjct: 103 SLRLLSL-HGNDISVVPEGAFNDLSALSHL 131
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS 66
L + L NN + + +F+N + L +L L N+L PR+ L ++++ N IS
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 67 DSFPCWMGSLSELKILVLRSNQFDC 91
LS L L + +N C
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPLYC 140
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 172 MDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 231
+D S+NR ++ N L L LS+N L P +F+ + +L L L N + +
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVV 117
Query: 232 PE 233
PE
Sbjct: 118 PE 119
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 22/143 (15%)
Query: 102 FQALRIIDLSH------TEFTGFLPRRIFPSMEAMKNVD---EQGRLEYMGRAFCDESI- 151
+ L+ +D H TEF+ FL S+E + +D ++++ G S+
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFL------SLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451
Query: 152 TVAMKGHDFQ---LQNIF---VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTG 205
T+ M G+ F+ L N+F +D S + V L++LN+SHN+L
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511
Query: 206 NIPVSFENMTALESLDLSFNKLD 228
+ + +L +LD SFN+++
Sbjct: 512 LDSSHYNQLYSLSTLDCSFNRIE 534
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 187 LGNFKSLKVLNLSHNSL-TGNIPVSFENMTALESLDLSFN 225
+G +LK LN++HN + + +P F N+T L +DLS+N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 22/143 (15%)
Query: 102 FQALRIIDLSH------TEFTGFLPRRIFPSMEAMKNVD---EQGRLEYMGRAFCDESI- 151
+ L+ +D H TEF+ FL S+E + +D ++++ G S+
Sbjct: 393 LEELQHLDFQHSTLKRVTEFSAFL------SLEKLLYLDISYTNTKIDFDGIFLGLTSLN 446
Query: 152 TVAMKGHDFQ---LQNIF---VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTG 205
T+ M G+ F+ L N+F +D S + V L++LN+SHN+L
Sbjct: 447 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 506
Query: 206 NIPVSFENMTALESLDLSFNKLD 228
+ + +L +LD SFN+++
Sbjct: 507 LDSSHYNQLYSLSTLDCSFNRIE 529
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 187 LGNFKSLKVLNLSHNSL-TGNIPVSFENMTALESLDLSFN 225
+G +LK LN++HN + + +P F N+T L +DLS+N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 103/259 (39%), Gaps = 50/259 (19%)
Query: 25 FANASHLRSLDLYSNKLEGPLP---RSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81
F S LR LDL SN L+ P +++ K L + N + N CW S + ++
Sbjct: 167 FLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQN 226
Query: 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT-------GFLPRRIFPSMEAMKNVD 134
L L +NQ ++ + L +DLS+ +LP + S+E N+
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLE-YNNIQ 285
Query: 135 EQGRLEYMG----------RAFCDESITVAMKGH--DFQLQNI-FVMFRAMD------FS 175
+ G RAF +S+++A + DF Q + ++ + MD
Sbjct: 286 RLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTK 345
Query: 176 SNRFHGEIS----EVLGNFKSLKVL----------------NLSHNSLTGNIPVSFENMT 215
SN F G +S + F SL+ L NL+ N ++ +F +
Sbjct: 346 SNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLG 405
Query: 216 ALESLDLSFNKLDGRIPEQ 234
L LDL N+++ ++ Q
Sbjct: 406 QLRILDLGLNEIEQKLSGQ 424
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 193 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233
+ VLNL+HN L P +F + L LD FN + PE
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE 67
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 169 FRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228
+ + N+ V +L LNL+HN L F+ +T L LDLS+N+L
Sbjct: 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
Query: 229 GRIPEQXXXXXXXXXXXXXYNRLWGRIPRG 258
+PE Y +P G
Sbjct: 171 S-LPEGVFDKLTQLKDLRLYQNQLKSVPDG 199
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSL-AKYIKLEVVNVENN 63
T L L+L +N L+ F ++L LDL N+L+ LP + K +L+ + + N
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQN 191
Query: 64 MISDSFPCWMGSLSELKILVLRSNQFDC 91
+ L+ L+ + L N +DC
Sbjct: 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC 219
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 169 FRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228
R +D SSN H + + ++L+VL L +N + +FE+M L+ L LS N++
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI- 148
Query: 229 GRIP 232
R P
Sbjct: 149 SRFP 152
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 169 FRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228
+++F SN+ + G LK LNL+ N L F+ +T+L+ + L N D
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 231
Query: 229 GRIP 232
P
Sbjct: 232 CSCP 235
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 27/232 (11%)
Query: 10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF 69
L+L+ NS++ +TF + HL L L N + + L + + +N ++
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 70 PCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEA 129
LS+L+ L LR+N + P + P +LR +DL + ++ F E
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVP--SLRRLDLGELKRLEYISEAAF---EG 154
Query: 130 MKNVDEQGRLEYMGRAFCD----ESITVAMKGHDFQLQ-NIFVMFRAMDF---SSNR--- 178
+ N L Y+ C+ ++T ++ + +L N + R F +S R
Sbjct: 155 LVN------LRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 179 -FHGEISEVLGN----FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 225
H +++ + N KSL+ LNLSHN+L F + LE + L+ N
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 5/136 (3%)
Query: 10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSL-AKYIKLEVVNVENNMISDS 68
L LE+N L+ H F + L L L N+++ LP + K KL ++ + N +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQSL 91
Query: 69 FPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSME 128
L++LK L L +NQ P I +L+ I L + PR + S
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 149
Query: 129 AMKNVD-EQGRLEYMG 143
KN EQG + G
Sbjct: 150 LNKNSQKEQGSAKCSG 165
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSL-AKYIKLEVVNVENN 63
T+L L L N ++ F + L L L+ NKL+ LP + K +L+ + ++ N
Sbjct: 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTN 110
Query: 64 MISDSFPCWMGSLSELKILVLRSNQFDC 91
+ L+ L+ + L +N +DC
Sbjct: 111 QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 39/230 (16%)
Query: 10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKL--EGPLPRSLAKYIKLEVVNVENNMISD 67
L LE+N L+ H F + L L L SN L +G +S L+ +++ N
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN---- 88
Query: 68 SFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSM 127
++ + SN + L +D H+ +F S+
Sbjct: 89 ------------GVITMSSN-----------FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 128 EAMKNVD---EQGRLEYMGRAFCDESITV-AMKGHDFQ---LQNIFVMFRAM---DFSSN 177
+ +D R+ + G S+ V M G+ FQ L +IF R + D S
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 178 RFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
+ + SL+VLN+SHN+ ++ + +L+ LD S N +
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
R +D S S V K LKVLNL++N + +F + L+ L+LS+N L
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
+V L+VL L+HN L P F ++TAL L L+ N+L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 27/232 (11%)
Query: 10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF 69
L+L+ NS++ +TF + HL L L N + + L + + +N ++
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 70 PCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEA 129
LS+L+ L LR+N + P + P +LR +DL + ++ F E
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVP--SLRRLDLGELKRLEYISEAAF---EG 154
Query: 130 MKNVDEQGRLEYMGRAFCD----ESITVAMKGHDFQLQ-NIFVMFRAMDF---SSNR--- 178
+ N L Y+ C+ ++T ++ + +L N + R F +S R
Sbjct: 155 LVN------LRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 179 -FHGEISEVLGN----FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 225
H +++ + N KSL+ LNLSHN+L F + LE + L+ N
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 6 ELITLHLENNSLE--GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
EL++L+L NN L + + A +L+ L+L N+L+ K +KLE + ++ N
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230
Query: 64 MISDSF---PCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA 104
+SD+F ++ ++ E +LR + + PP I F +A
Sbjct: 231 SLSDTFRDQSTYISAIRERFPKLLRLDGHELPPP---IAFDVEA 271
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 14 NNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWM 73
++SL+ + + +A +++ LDL N L LA + KLE++N+ +N++ ++ +
Sbjct: 19 DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L 76
Query: 74 GSLSELKILVLRSN 87
SLS L+ L L +N
Sbjct: 77 ESLSTLRTLDLNNN 90
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 14 NNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWM 73
++SL+ + + +A +++ LDL N L LA + KLE++N+ +N++ ++ +
Sbjct: 19 DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L 76
Query: 74 GSLSELKILVLRSN 87
SLS L+ L L +N
Sbjct: 77 ESLSTLRTLDLNNN 90
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 24/116 (20%)
Query: 5 TELITLHLENNSLEG-------HI-----------------HNTFANASHLRSLDLYSNK 40
TEL TL L NN L H+ F + L+ L L +N+
Sbjct: 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142
Query: 41 LEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNS 96
L+ + K L+ +++ N + L +L+ + L NQFDC C +
Sbjct: 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCET 198
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 36/89 (40%)
Query: 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
T+L L L N + N F +HL L+L N L R KLEV+++ N
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358
Query: 65 ISDSFPCWMGSLSELKILVLRSNQFDCPP 93
I L LK L L +NQ P
Sbjct: 359 IRALGDQSFLGLPNLKELALDTNQLKSVP 387
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 139 LEYMGRAFCDESITVAMKGHDFQL-QNIFVMFRAMD---FSSNRFHGEISEVLGNFKSLK 194
LE G CD S K F L +++F F ++ + N + L
Sbjct: 272 LEASGVKTCDLS-----KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 195 VLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
LNLS N L FEN+ LE LDLS+N +
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62
S + L L+NN + + F HL +L L +NK+ ++ + KL+ + +
Sbjct: 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111
Query: 63 NMISDSFPCWMGSLSELKI 81
N + + P SL EL+I
Sbjct: 112 NHLVEIPPNLPSSLVELRI 130
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
Length = 349
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 41 LEGPLPRSLAKYIKLEVVNVENNMISDSFPC-WMGSLSEL---KILVLRSNQFDCPPCNS 96
LE LP ++ + I E V VE + I +S PC +G S L I + +C C+
Sbjct: 240 LENKLPENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK 299
Query: 97 --NITFPFQALRIIDLSHTEFTGFLPRRI 123
+ PF + +I L T F +R+
Sbjct: 300 VFHSKNPFNWMDLISLQGK--TNFFEKRV 326
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 24/114 (21%)
Query: 5 TELITLHLENNSLEG-------HI-----------------HNTFANASHLRSLDLYSNK 40
TEL TL L NN L H+ F + L+ L L +N+
Sbjct: 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142
Query: 41 LEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPC 94
L+ + K L+ +++ N + L +L+ + L NQFDC C
Sbjct: 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
L L+L++N+L+ +TF + +L L L+ N++ R+ L+ + + N
Sbjct: 128 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 187
Query: 65 ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDL 110
++ P L L L L +N P + P +AL+ + L
Sbjct: 188 VAHVHPHAFRDLGRLMTLYLFANNLSALP--TEALAPLRALQYLRL 231
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
L L+L++N+L+ +TF + +L L L+ N++ R+ L+ + + N
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
Query: 65 ISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDL 110
++ P L L L L +N P + P +AL+ + L
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALP--TEALAPLRALQYLRL 232
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSL-AKYIKLEVVNVENN 63
T L L L N L+ F ++L L LY N+L+ LP+ + K L ++++NN
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNN 167
Query: 64 MISDSFPCWMGSLSELKILVLRSNQFDCPP 93
+ L++LK L L NQ P
Sbjct: 168 QLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSL-AKYIKLEVVNVENN 63
T L L+L +N L+ F ++L LDL +N+L+ LP + K +L+ +++ +N
Sbjct: 133 TNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDN 191
Query: 64 MISDSFPCWMGSLSELKILVLRSNQFDC 91
+ L+ L + L +N +DC
Sbjct: 192 QLKSVPDGVFDRLTSLTHIWLLNNPWDC 219
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 6 ELITLHLENNSLE--GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
EL++L+L NN L + + A +L+ L+L N+L+ K +KLE + ++ N
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230
Query: 64 MISDSF---PCWMGSLSELKILVLRSNQFDCPP 93
+ D+F ++ ++ E +LR + + PP
Sbjct: 231 SLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 263
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSL-AKYIKLEVVNVENNMISDS 68
L LE NSL+ + F + L L L NKL+ LP + K L +N+ N +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 69 FPCWMGSLSELKILVLRSNQFDCPP 93
L++LK L L +NQ P
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLP 116
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 6 ELITLHLENNSLE--GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
EL++L+L NN L + + A +L+ L+L N+L+ K +KLE + ++ N
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230
Query: 64 MISDSF---PCWMGSLSELKILVLRSNQFDCPP 93
+ D+F ++ ++ E +LR + + PP
Sbjct: 231 SLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 263
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 180 HGEISEVLGNFKS-LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233
H ++++V + + + VLNL+HN L +F + L SLD+ FN + PE
Sbjct: 13 HLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 180 HGEISEVLGNFKS-LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233
H ++++V + + + VLNL+HN L +F + L SLD+ FN + PE
Sbjct: 18 HLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 180 HGEISEVLGNFKS-LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233
H ++++V + + + VLNL+HN L +F + L SLD+ FN + PE
Sbjct: 23 HLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 77
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 83/215 (38%), Gaps = 44/215 (20%)
Query: 21 IHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELK 80
+ + L L+ N+LEG LP + IKL +N+ N I++ + G +++
Sbjct: 322 VETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380
Query: 81 ILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE 140
L N+ P NI F A + S +F S + +VD
Sbjct: 381 NLSFAHNKLKYIP---NI---FDAKSVSVXSAIDF----------SYNEIGSVD------ 418
Query: 141 YMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSH 200
G+ F D KG + +++ S+N+ E+ L +NL
Sbjct: 419 --GKNF-DPLDPTPFKG---------INVSSINLSNNQISKFPKELFSTGSPLSSINLXG 466
Query: 201 NSLTGNIPVS--------FENMTALESLDLSFNKL 227
N LT IP + F+N L S+DL FNKL
Sbjct: 467 NXLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKL 500
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 6 ELITLHLENNSLE--GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
EL++L+L NN L + + A +L+ L+L N+L+ K +KLE + ++ N
Sbjct: 165 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 224
Query: 64 MISDSF---PCWMGSLSELKILVLRSNQFDCPP 93
+ D+F ++ ++ E +LR + + PP
Sbjct: 225 SLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 257
>pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
Length = 311
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 41 LEGPLPRSLAKYIKLEVVNVENNMISDSFPC 71
LE LP + + I E V VE + I +S PC
Sbjct: 239 LENKLPEEVVQNIVKEAVEVERSFICESLPC 269
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 22 HNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81
+ F + + +DL N+L +L+ ++K +N+ +N IS P + LS+ +
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALS-HLKGIYLNLASNHISIILPSLLPILSQQRT 551
Query: 82 LVLRSNQFDCPPCNSNITF 100
+ LR N DC C SNI F
Sbjct: 552 INLRQNPLDC-TC-SNIYF 568
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 6 ELITLHLENNSLE--GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN 63
EL++L+L NN L + + A +L+ L+L N+L+ K +KLE + ++ N
Sbjct: 165 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 224
Query: 64 MISDSF---PCWMGSLSELKILVLRSNQFDCPP 93
+ D+F ++ ++ E +LR + + PP
Sbjct: 225 SLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 257
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 187 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233
L N + L+ LNLS+N G +F+ LE LD++F L + P
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPH 417
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
R +D NR + +F L+ L L+ N ++ P +F N+ L +L L N+L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
>pdb|3KCU|A Chain A, Structure Of Formate Channel
pdb|3KCU|B Chain B, Structure Of Formate Channel
pdb|3KCU|C Chain C, Structure Of Formate Channel
pdb|3KCU|D Chain D, Structure Of Formate Channel
pdb|3KCU|E Chain E, Structure Of Formate Channel
pdb|3KCV|A Chain A, Structure Of Formate Channel
pdb|3KCV|B Chain B, Structure Of Formate Channel
pdb|3KCV|C Chain C, Structure Of Formate Channel
pdb|3KCV|D Chain D, Structure Of Formate Channel
pdb|3KCV|E Chain E, Structure Of Formate Channel
pdb|3KCV|F Chain F, Structure Of Formate Channel
pdb|3KCV|G Chain G, Structure Of Formate Channel
pdb|3KCV|H Chain H, Structure Of Formate Channel
pdb|3KCV|I Chain I, Structure Of Formate Channel
pdb|3KCV|J Chain J, Structure Of Formate Channel
Length = 285
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 139 LEYMGRAFCDES----ITVAM---KGHDFQLQNIFVMFRAM---DFSSNRFHGEISEVLG 188
+ Y GR+ D++ + VAM G + + N+F++ + DF+S F +
Sbjct: 181 MSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRDFASPEFWTAVGSAPE 240
Query: 189 NFKSLKVLNLSHNSLTGNIPVSFENM 214
NF L V+N ++L IPV+ N+
Sbjct: 241 NFSHLTVMNFITDNL---IPVTIGNI 263
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 277 GEPLTVRCSNDGLPKAPRLASF-DHDETASRFDWKMAKMGYASGLVI 322
GEP+T++C DG P+ R+A + +H + S +KM + LVI
Sbjct: 20 GEPITLQCKVDGTPEI-RIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 168 MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
++ A+D S+ + IS + + L L L+ NSLT +P +N++ L LDLS N+L
Sbjct: 225 LWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
+++D S+NR + L +L+ L L+ N + SF ++ +LE LDLS+N L
Sbjct: 29 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF 69
L+L++N+L+ NTF + +L L L+ N++ + L+ + + N ++
Sbjct: 133 LYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVH 192
Query: 70 PCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLS 111
P L L L L +N P + + P ++L+ + L+
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSMLP--AEVLVPLRSLQYLRLN 232
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 191 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 225
++L +L L N+L G +F +T LE LDLS N
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN 89
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 227
+++D S+NR + L +L+ L L+ N + SF ++ +LE LDLS+N L
Sbjct: 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
>pdb|3NDQ|A Chain A, Structure Of Human Tfiis Domain Ii
Length = 108
Score = 28.1 bits (61), Expect = 6.5, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 148 DESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNI 207
D+ I + + Q +++ + + ++ + + N K K NL N L GNI
Sbjct: 32 DDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNI 91
Query: 208 PVS-FENMTALE 218
P F MTA E
Sbjct: 92 PPDLFARMTAEE 103
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM 64
T+L L L N L F HL+ L + NKL LPR + + L + ++ N
Sbjct: 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146
Query: 65 ISDSFPCWMGSLSELKILVLRSNQFDC 91
+ LS L L N +DC
Sbjct: 147 LKSIPHGAFDRLSSLTHAYLFGNPWDC 173
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 23 NTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82
N + L SL L +NK+ L++ KL+ +++E+N ISD P + L++L+ L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183
Query: 83 VLRSNQF 89
L N
Sbjct: 184 YLSKNHI 190
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 23 NTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82
N + L SL L +NK+ L++ KL+ +++E+N ISD P + L++L+ L
Sbjct: 125 NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180
Query: 83 VLRSNQF 89
L N
Sbjct: 181 YLSKNHI 187
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 23 NTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82
N + L SL L +NK+ L++ KL+ +++E+N ISD P + L++L+ L
Sbjct: 126 NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 181
Query: 83 VLRSNQF 89
L N
Sbjct: 182 YLSKNHI 188
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 23 NTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82
N + L SL L +NK+ L++ KL+ +++E+N ISD P + L++L+ L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183
Query: 83 VLRSNQF 89
L N
Sbjct: 184 YLSKNHI 190
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 23 NTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82
N + L SL L +NK+ L++ KL+ +++E+N ISD P + L++L+ L
Sbjct: 146 NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 201
Query: 83 VLRSNQF 89
L N
Sbjct: 202 YLSKNHI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 23 NTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82
N + L SL L +NK+ L++ KL+ +++E+N ISD P + L++L+ L
Sbjct: 146 NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 201
Query: 83 VLRSNQF 89
L N
Sbjct: 202 YLSKNHI 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,236,816
Number of Sequences: 62578
Number of extensions: 355247
Number of successful extensions: 1047
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 287
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)