Query 039161
Match_columns 333
No_of_seqs 297 out of 3402
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 06:54:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.4E-32 2.9E-37 272.4 16.3 274 2-279 330-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.8E-30 1.5E-34 253.2 16.2 251 3-258 307-566 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.3E-28 2.8E-33 214.6 -0.2 249 5-257 125-383 (873)
4 KOG4194 Membrane glycoprotein 99.9 4.9E-27 1.1E-31 204.8 5.5 272 1-281 74-378 (873)
5 KOG4237 Extracellular matrix p 99.9 1.1E-25 2.3E-30 188.0 -1.4 276 2-285 64-363 (498)
6 KOG0444 Cytoskeletal regulator 99.9 5.3E-24 1.1E-28 187.7 0.6 270 3-280 77-380 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 5.5E-22 1.2E-26 175.1 0.4 248 2-258 5-286 (1255)
8 KOG4237 Extracellular matrix p 99.8 2.7E-22 5.8E-27 167.7 -4.0 247 2-252 89-359 (498)
9 KOG0472 Leucine-rich repeat pr 99.8 1.3E-22 2.7E-27 170.1 -6.6 219 6-253 69-289 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 3.8E-21 8.3E-26 161.3 -0.1 264 6-281 229-541 (565)
11 PRK15370 E3 ubiquitin-protein 99.8 9.9E-19 2.2E-23 164.7 13.5 208 3-257 197-405 (754)
12 PRK15387 E3 ubiquitin-protein 99.8 2.2E-18 4.8E-23 161.6 11.0 83 166-257 381-463 (788)
13 KOG0618 Serine/threonine phosp 99.8 3.7E-20 8E-25 169.9 -1.3 241 6-257 220-471 (1081)
14 PRK15387 E3 ubiquitin-protein 99.7 1.4E-17 3E-22 156.3 13.2 77 192-282 383-459 (788)
15 KOG0617 Ras suppressor protein 99.7 4.9E-20 1.1E-24 137.7 -3.3 185 25-257 29-217 (264)
16 PLN03210 Resistant to P. syrin 99.7 4.6E-17 1E-21 162.9 15.9 226 4-257 588-843 (1153)
17 PLN03210 Resistant to P. syrin 99.7 2.2E-16 4.8E-21 158.0 18.3 235 4-249 610-879 (1153)
18 PRK15370 E3 ubiquitin-protein 99.7 3.5E-17 7.6E-22 154.3 9.4 205 5-252 220-428 (754)
19 KOG0617 Ras suppressor protein 99.7 3.1E-19 6.7E-24 133.4 -4.1 179 6-232 34-216 (264)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.6E-18 3.6E-23 151.0 -0.9 233 6-252 24-291 (319)
21 KOG0618 Serine/threonine phosp 99.7 1.7E-18 3.8E-23 159.1 -1.5 243 6-262 200-452 (1081)
22 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-17 2.3E-22 145.9 0.1 235 6-251 52-319 (319)
23 PLN03150 hypothetical protein; 99.6 4.5E-15 9.8E-20 139.3 8.7 117 168-284 419-537 (623)
24 COG4886 Leucine-rich repeat (L 99.4 5.1E-13 1.1E-17 119.9 6.8 197 9-256 97-294 (394)
25 KOG0532 Leucine-rich repeat (L 99.4 1.5E-14 3.2E-19 127.1 -3.1 88 28-122 74-161 (722)
26 KOG0532 Leucine-rich repeat (L 99.4 1E-14 2.2E-19 128.2 -4.5 192 7-250 77-271 (722)
27 PLN03150 hypothetical protein; 99.3 7.5E-12 1.6E-16 117.7 9.5 111 7-118 420-530 (623)
28 PF14580 LRR_9: Leucine-rich r 99.3 7.6E-12 1.6E-16 97.3 5.3 105 6-116 20-126 (175)
29 COG4886 Leucine-rich repeat (L 99.2 6.8E-12 1.5E-16 112.6 5.7 180 6-235 117-297 (394)
30 KOG3207 Beta-tubulin folding c 99.2 1.5E-12 3.3E-17 111.2 0.6 209 27-252 119-339 (505)
31 KOG3207 Beta-tubulin folding c 99.2 1.6E-12 3.4E-17 111.1 -0.3 207 6-229 122-340 (505)
32 PF13855 LRR_8: Leucine rich r 99.2 1.1E-11 2.4E-16 79.6 3.4 60 6-65 2-61 (61)
33 KOG1909 Ran GTPase-activating 99.2 3.2E-12 6.9E-17 106.4 0.3 235 6-251 31-310 (382)
34 PF14580 LRR_9: Leucine-rich r 99.2 1.6E-11 3.4E-16 95.5 3.7 84 27-116 17-101 (175)
35 KOG1909 Ran GTPase-activating 99.2 7.3E-12 1.6E-16 104.2 1.4 230 23-252 24-283 (382)
36 PF13855 LRR_8: Leucine rich r 99.1 5.6E-11 1.2E-15 76.2 3.6 61 29-89 1-61 (61)
37 KOG1259 Nischarin, modulator o 99.1 2E-11 4.3E-16 99.9 1.0 130 76-253 283-413 (490)
38 KOG0531 Protein phosphatase 1, 99.0 3.6E-11 7.7E-16 108.3 -1.1 216 6-252 73-290 (414)
39 KOG1259 Nischarin, modulator o 99.0 7.7E-11 1.7E-15 96.5 0.7 104 6-117 285-388 (490)
40 KOG0531 Protein phosphatase 1, 98.9 2.7E-10 5.9E-15 102.6 1.0 221 6-256 96-322 (414)
41 KOG2120 SCF ubiquitin ligase, 98.8 2.8E-10 6.1E-15 93.1 -4.0 57 166-224 312-372 (419)
42 KOG4658 Apoptotic ATPase [Sign 98.7 5.8E-09 1.2E-13 100.9 3.6 106 6-114 546-653 (889)
43 KOG2982 Uncharacterized conser 98.7 1.1E-08 2.4E-13 83.9 2.3 210 27-252 69-290 (418)
44 KOG1859 Leucine-rich repeat pr 98.6 3.3E-09 7E-14 96.7 -1.4 110 163-281 183-292 (1096)
45 KOG4579 Leucine-rich repeat (L 98.6 1.3E-09 2.7E-14 79.1 -4.3 111 167-285 53-163 (177)
46 KOG4658 Apoptotic ATPase [Sign 98.5 2.4E-07 5.2E-12 89.9 6.2 84 3-88 570-653 (889)
47 KOG1859 Leucine-rich repeat pr 98.4 9.2E-09 2E-13 93.9 -3.9 124 7-139 166-290 (1096)
48 KOG2120 SCF ubiquitin ligase, 98.4 2.4E-09 5.2E-14 87.8 -7.1 179 54-249 186-373 (419)
49 KOG4579 Leucine-rich repeat (L 98.4 2.2E-08 4.9E-13 72.8 -1.7 61 191-252 53-113 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.4 1.8E-07 3.8E-12 76.0 3.0 111 6-116 31-170 (388)
51 KOG2982 Uncharacterized conser 98.3 8E-08 1.7E-12 79.0 -0.2 213 28-256 44-266 (418)
52 COG5238 RNA1 Ran GTPase-activa 98.3 1.8E-07 3.8E-12 76.1 0.3 233 25-257 26-290 (388)
53 PF12799 LRR_4: Leucine Rich r 98.3 1.1E-06 2.3E-11 51.7 3.5 35 31-66 3-37 (44)
54 PRK15386 type III secretion pr 98.2 1.4E-05 2.9E-10 70.3 9.7 75 26-115 49-124 (426)
55 PF12799 LRR_4: Leucine Rich r 98.2 2.7E-06 5.8E-11 50.0 3.6 36 168-204 2-37 (44)
56 KOG1644 U2-associated snRNP A' 98.1 3.9E-06 8.5E-11 65.4 5.1 104 7-112 44-149 (233)
57 KOG1644 U2-associated snRNP A' 98.1 3.8E-06 8.2E-11 65.5 4.7 84 30-116 43-126 (233)
58 PRK15386 type III secretion pr 98.1 2.6E-05 5.7E-10 68.5 9.2 88 6-112 53-141 (426)
59 PF13306 LRR_5: Leucine rich r 97.7 0.0001 2.2E-09 54.9 6.3 60 24-85 7-66 (129)
60 PF13306 LRR_5: Leucine rich r 97.7 0.00014 2.9E-09 54.2 6.9 62 47-112 6-67 (129)
61 KOG3665 ZYG-1-like serine/thre 97.7 2.5E-05 5.4E-10 74.2 2.5 117 3-122 147-269 (699)
62 KOG3665 ZYG-1-like serine/thre 97.6 3.2E-05 6.9E-10 73.5 2.5 108 6-116 123-233 (699)
63 KOG2739 Leucine-rich acidic nu 97.4 9.7E-05 2.1E-09 60.1 2.3 93 21-116 35-129 (260)
64 KOG2739 Leucine-rich acidic nu 97.3 7.7E-05 1.7E-09 60.7 0.3 101 7-111 45-151 (260)
65 KOG2123 Uncharacterized conser 97.1 1.9E-05 4.2E-10 64.7 -4.3 100 6-109 20-123 (388)
66 KOG2123 Uncharacterized conser 96.8 1.9E-05 4.2E-10 64.7 -6.6 103 27-134 17-123 (388)
67 PF00560 LRR_1: Leucine Rich R 96.5 0.001 2.2E-08 32.5 0.7 11 32-42 3-13 (22)
68 PF00560 LRR_1: Leucine Rich R 96.0 0.0036 7.8E-08 30.5 1.2 21 6-27 1-21 (22)
69 KOG1947 Leucine rich repeat pr 96.0 0.00086 1.9E-08 61.9 -2.1 109 6-115 189-307 (482)
70 KOG4341 F-box protein containi 95.7 0.00034 7.3E-09 60.8 -5.6 86 166-251 293-384 (483)
71 KOG4308 LRR-containing protein 95.7 7.4E-05 1.6E-09 68.0 -10.2 110 7-116 89-217 (478)
72 KOG4308 LRR-containing protein 94.6 0.0001 2.2E-09 67.1 -12.6 86 167-252 204-303 (478)
73 KOG4341 F-box protein containi 94.6 0.00066 1.4E-08 59.0 -6.9 83 3-86 163-251 (483)
74 PF13504 LRR_7: Leucine rich r 94.5 0.022 4.8E-07 25.7 1.1 10 31-40 3-12 (17)
75 smart00370 LRR Leucine-rich re 93.5 0.074 1.6E-06 26.9 2.1 13 30-42 3-15 (26)
76 smart00369 LRR_TYP Leucine-ric 93.5 0.074 1.6E-06 26.9 2.1 13 30-42 3-15 (26)
77 KOG0473 Leucine-rich repeat pr 93.5 0.0017 3.6E-08 52.3 -6.1 84 166-252 41-124 (326)
78 smart00370 LRR Leucine-rich re 92.7 0.1 2.3E-06 26.3 1.9 13 192-204 3-15 (26)
79 smart00369 LRR_TYP Leucine-ric 92.7 0.1 2.3E-06 26.3 1.9 13 192-204 3-15 (26)
80 KOG3864 Uncharacterized conser 92.4 0.017 3.7E-07 45.6 -1.9 83 167-249 101-186 (221)
81 KOG0473 Leucine-rich repeat pr 91.7 0.0046 9.9E-08 49.8 -5.8 95 17-116 30-124 (326)
82 KOG3864 Uncharacterized conser 90.8 0.013 2.9E-07 46.1 -4.0 83 52-135 100-183 (221)
83 PF13516 LRR_6: Leucine Rich r 90.2 0.094 2E-06 25.9 0.2 15 6-20 3-17 (24)
84 smart00365 LRR_SD22 Leucine-ri 84.4 0.95 2.1E-05 22.9 1.8 14 29-42 2-15 (26)
85 smart00364 LRR_BAC Leucine-ric 83.6 0.77 1.7E-05 23.2 1.3 13 6-18 3-15 (26)
86 KOG1947 Leucine rich repeat pr 82.5 0.92 2E-05 41.8 2.4 85 6-90 215-308 (482)
87 smart00368 LRR_RI Leucine rich 80.0 1.6 3.6E-05 22.4 1.8 15 215-229 2-16 (28)
88 TIGR00864 PCC polycystin catio 75.2 1.2 2.6E-05 48.8 0.8 42 221-266 1-42 (2740)
89 KOG3763 mRNA export factor TAP 74.5 2.1 4.5E-05 39.5 2.0 59 6-66 219-283 (585)
90 TIGR00864 PCC polycystin catio 74.2 2.5 5.3E-05 46.6 2.7 33 197-229 1-33 (2740)
91 KOG3763 mRNA export factor TAP 73.9 1.6 3.6E-05 40.1 1.2 66 51-118 216-285 (585)
92 KOG4242 Predicted myosin-I-bin 70.3 16 0.00034 33.4 6.3 61 29-89 214-280 (553)
93 PF05725 FNIP: FNIP Repeat; I 66.2 7.6 0.00017 22.4 2.5 11 2-12 9-19 (44)
94 PF03302 VSP: Giardia variant- 45.1 8.1 0.00017 34.8 0.4 28 305-332 363-390 (397)
95 smart00367 LRR_CC Leucine-rich 44.3 16 0.00035 18.1 1.3 11 215-225 2-12 (26)
96 PF02404 SCF: Stem cell factor 40.2 9.4 0.0002 31.5 0.0 28 306-333 212-239 (273)
97 PTZ00382 Variant-specific surf 37.6 38 0.00081 23.6 2.7 14 309-322 66-79 (96)
98 PF08693 SKG6: Transmembrane a 37.6 24 0.00051 20.0 1.3 11 313-323 16-26 (40)
99 PF05454 DAG1: Dystroglycan (D 30.0 17 0.00038 31.0 0.0 23 311-333 150-172 (290)
100 PRK10132 hypothetical protein; 25.0 8.6 0.00019 27.4 -2.2 18 316-333 90-107 (108)
101 PF12191 stn_TNFRSF12A: Tumour 24.9 25 0.00055 25.5 0.1 26 308-333 78-103 (129)
102 PRK10404 hypothetical protein; 22.5 16 0.00035 25.7 -1.2 19 315-333 83-101 (101)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.4e-32 Score=272.39 Aligned_cols=274 Identities=28% Similarity=0.436 Sum_probs=225.9
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
.+| +|++|++++|.+.+..|..+..+++|+.|++++|++++.+|..+..+.+|+.|++++|.+.+..|..+..+++|+.
T Consensus 330 ~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~ 408 (968)
T PLN00113 330 SLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408 (968)
T ss_pred cCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence 355 7899999999999888988999999999999999998888888888888999999999988888888888889999
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc--cccccc---cCceEEee-
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY--MGRAFC---DESITVAM- 155 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~--~~~~~~---~~~~~~~~- 155 (333)
|++++|++++..+..+ ..+++|+.|++++|.+++.++.. +..+++|+.+++.+|... ++.... ........
T Consensus 409 L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n 485 (968)
T PLN00113 409 VRLQDNSFSGELPSEF--TKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN 485 (968)
T ss_pred EECcCCEeeeECChhH--hcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEEECcCC
Confidence 9999998888777666 67888888888888888776654 456777777777765421 111100 00011111
Q ss_pred --cCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCC
Q 039161 156 --KGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233 (333)
Q Consensus 156 --~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 233 (333)
.+........+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|+|++|.+++.+|.
T Consensus 486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 111222234478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCC
Q 039161 234 QLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEP 279 (333)
Q Consensus 234 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~ 279 (333)
.+..+++|+.+++++|+++|.+|...++..+....+.+|+.+||.+
T Consensus 566 ~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 566 NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999998899888899999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=6.8e-30 Score=253.20 Aligned_cols=251 Identities=29% Similarity=0.407 Sum_probs=214.4
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
++ +|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++..|.++..+++|+.|
T Consensus 307 l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 307 LQ-NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CC-CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 45 79999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccccc--ccc--cc--cCceEEeec
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYM--GRA--FC--DESITVAMK 156 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~--~~~--~~--~~~~~~~~~ 156 (333)
++++|++.+..+..+ ..+++|+.|++++|.+++..|.. +..++.|+.+++.++...- ... .. .....+..+
T Consensus 386 ~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 386 ILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462 (968)
T ss_pred ECcCCEecccCCHHH--hCCCCCCEEECcCCEeeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence 999999998888766 77899999999999999888865 7788889998887764221 100 00 001111111
Q ss_pred C---cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCC
Q 039161 157 G---HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233 (333)
Q Consensus 157 ~---~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 233 (333)
. ...... ..++|+.|++++|++++..|..+..+++|+.|++++|++.+.+|..++.+++|+.|++++|.+++.+|.
T Consensus 463 ~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 541 (968)
T PLN00113 463 KFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541 (968)
T ss_pred eeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh
Confidence 0 111111 146899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccceeecccCcceecCCCC
Q 039161 234 QLLSVTALALLNLSYNRLWGRIPRG 258 (333)
Q Consensus 234 ~~~~l~~L~~L~l~~N~l~~~~p~~ 258 (333)
.+..+++|+.|++++|+++|.+|..
T Consensus 542 ~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 542 SFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred hHhCcccCCEEECCCCcccccCChh
Confidence 9999999999999999999999974
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.3e-28 Score=214.56 Aligned_cols=249 Identities=22% Similarity=0.227 Sum_probs=182.0
Q ss_pred CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84 (333)
Q Consensus 5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 84 (333)
.+++.|+|.+|.|+.+..+.++.++.|+.||||.|.|+.+...+|..-.++++|+|++|+|+......|..+.+|.+|.|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 46899999999999888889999999999999999999776678888889999999999999888888999999999999
Q ss_pred ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccCceE---EeecCcc-
Q 039161 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDESIT---VAMKGHD- 159 (333)
Q Consensus 85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~---~~~~~~~- 159 (333)
+.|+++..+...| ..++.|+.|++..|++. ...-.-|+++++|+.+.+..|.. .+....+..... .......
T Consensus 205 srNrittLp~r~F--k~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 205 SRNRITTLPQRSF--KRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred ccCcccccCHHHh--hhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 9999998887776 77999999999999887 33222378888888888776542 233333211110 1111000
Q ss_pred -----hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCC
Q 039161 160 -----FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ 234 (333)
Q Consensus 160 -----~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 234 (333)
..+.. +..|+.|++|+|.+.++.++.+..+++|+.|+|++|+++...+..|..+..|++|+|++|.+...-...
T Consensus 282 ~~vn~g~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 282 QAVNEGWLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hhhhcccccc-cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 01111 566777777777777777777777777777777777777666677777777777777777776555556
Q ss_pred ccccCccceeecccCcceecCCC
Q 039161 235 LLSVTALALLNLSYNRLWGRIPR 257 (333)
Q Consensus 235 ~~~l~~L~~L~l~~N~l~~~~p~ 257 (333)
|..+++|+.|||++|.+++.|..
T Consensus 361 f~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEec
Confidence 66677777777777777666654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=4.9e-27 Score=204.84 Aligned_cols=272 Identities=23% Similarity=0.221 Sum_probs=150.2
Q ss_pred CCCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCC----
Q 039161 1 GSFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSL---- 76 (333)
Q Consensus 1 g~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---- 76 (333)
|-+|+..++||+++|.+..+-+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.|+....+.+..+
T Consensus 74 g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 74 GFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred CcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 456777888999999999888888889999999888888887 566544334446666666666554444444444
Q ss_pred --------------------CCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhccc
Q 039161 77 --------------------SELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQ 136 (333)
Q Consensus 77 --------------------~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~ 136 (333)
.++++|+|++|+++....+.| ..+.+|..|.+++|+++ .+|...|+.++.|+.|++.
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F--~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF--DSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc--cccchheeeecccCccc-ccCHHHhhhcchhhhhhcc
Confidence 455555555555555554444 44556666666666666 5555556666666666665
Q ss_pred Cccccccc-ccccCce-----EEeecC---cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCC
Q 039161 137 GRLEYMGR-AFCDESI-----TVAMKG---HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNI 207 (333)
Q Consensus 137 ~~~~~~~~-~~~~~~~-----~~~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 207 (333)
.|...+.. ..+.... .+..++ .....+-.+.++++|+|+.|++...-..++-+++.|+.|++|+|.|..+-
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 55433221 1111100 000000 00000111445555555555555444445555555555555555555555
Q ss_pred ccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCC
Q 039161 208 PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT 281 (333)
Q Consensus 208 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~ 281 (333)
++.+...++|+.|+|++|+|+...+..|..+..|+.|+|++|.+. . ++-..|...+.....+|..|.+.
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~----l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-H----LAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-H----HHhhHHHHhhhhhhhcCcCCeEE
Confidence 555555555666666666555555555555555555666666553 1 11223333344444555555444
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-25 Score=187.96 Aligned_cols=276 Identities=20% Similarity=0.286 Sum_probs=210.5
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccC-CcCCCcccccccCCCCCC
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN-NMISDSFPCWMGSLSELK 80 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~ 80 (333)
++|+..+.++|..|+|+.+++++|..+++|+.||||+|+|+.+-|++|.++.+|..|-+-+ |+|+......|.++..++
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 5788899999999999999999999999999999999999999999999999988776655 999987778999999999
Q ss_pred EEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcc-------cccccccccCceE-
Q 039161 81 ILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRL-------EYMGRAFCDESIT- 152 (333)
Q Consensus 81 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~-------~~~~~~~~~~~~~- 152 (333)
.|.+.-|++.....+.+ ..++++..|.+..|.+. .++..-+..+..++.+++..+. .............
T Consensus 144 rLllNan~i~Cir~~al--~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDAL--RDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHhcChhhhcchhHHHH--HHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 99999999988887777 78999999999999888 6666668888888888776543 1111111000000
Q ss_pred ----EeecCc-------chhhhhhhhccceE--Ecc-CcccCccch-hhhhCCCCCCEEEccCCcCCCCCccccccCCCC
Q 039161 153 ----VAMKGH-------DFQLQNIFVMFRAM--DFS-SNRFHGEIS-EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 217 (333)
Q Consensus 153 ----~~~~~~-------~~~~~~~~~~L~~L--~ls-~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 217 (333)
+..... ..........++.+ .++ .+....+.| ..|..+++|+.|+|++|+++++-+.+|.+...+
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 000000 00000001112222 122 222333444 468999999999999999999999999999999
Q ss_pred cEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161 218 ESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 218 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~ 285 (333)
++|.|..|++...-...|.++..|+.|+|.+|+|+...|- .|+...+.+.+.+-+||+.|+|.
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~-----aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG-----AFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc-----cccccceeeeeehccCcccCccc
Confidence 9999999999877777889999999999999999866654 56666777888889999999985
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=5.3e-24 Score=187.74 Aligned_cols=270 Identities=21% Similarity=0.272 Sum_probs=171.9
Q ss_pred CcCcccEEECcCCccc-cccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 3 FSTELITLHLENNSLE-GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
+| .|+.+++..|++. .-+|..+..+..|+.||||+|+++ +.|..+..-.++-+|+||+|+|..+..+.|.++..|-+
T Consensus 77 Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred ch-hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 45 6788888888874 233444557888888999998888 67888888888888888888888544456668888888
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccc-------cccccCceEEe
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMG-------RAFCDESITVA 154 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~-------~~~~~~~~~~~ 154 (333)
|||++|++...+|.. ..+..|++|++++|.+... ...-.+++++|+.|++++....+. ..+.......+
T Consensus 155 LDLS~NrLe~LPPQ~---RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQI---RRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hccccchhhhcCHHH---HHHhhhhhhhcCCChhhHH-HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 888888888777754 5677888888888877632 222256677777777766432211 11111111111
Q ss_pred ecCc--chhhhhhhhccceEEccCcccCc----------------------cchhhhhCCCCCCEEEccCCcCCC-CCcc
Q 039161 155 MKGH--DFQLQNIFVMFRAMDFSSNRFHG----------------------EISEVLGNFKSLKVLNLSHNSLTG-NIPV 209 (333)
Q Consensus 155 ~~~~--~~~~~~~~~~L~~L~ls~n~l~~----------------------~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~ 209 (333)
-+.. ..+..-.+++|+.|+||+|+++. .+|.++.+++.|+.|++.+|+++- -+|.
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 1111 11111113444444444444431 455555555555555555555542 3566
Q ss_pred ccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccC-CccccccccccCCCCCCC
Q 039161 210 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFN-TFQNDSYIGNIRLCGEPL 280 (333)
Q Consensus 210 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~~~~~~~~~l~g~~~ 280 (333)
.++++..|+.+..++|.+. ..|+.++.|.+|+.|.|++|++. ++|.++.+. .+..+....|+.|.-.|-
T Consensus 311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 7777777777777777777 77888888888889999999887 777765543 244455555665554443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=5.5e-22 Score=175.13 Aligned_cols=248 Identities=21% Similarity=0.274 Sum_probs=161.4
Q ss_pred CCcCcccEEECcCCccc-cccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCC-------------
Q 039161 2 SFSTELITLHLENNSLE-GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISD------------- 67 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------- 67 (333)
-+| -++-.|+++|.+. +..|.....|++++.|.|...++. .+|..++.+.+|++|.+++|++..
T Consensus 5 VLp-FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLP-FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS 82 (1255)
T ss_pred ccc-eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence 355 6677777787776 566666666777777776666665 566666666666666666655431
Q ss_pred -----------cccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhccc
Q 039161 68 -----------SFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQ 136 (333)
Q Consensus 68 -----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~ 136 (333)
-+|..+..+..|..|||++|++...+..- ....++-.|++|+|+|. .+|..+|.+++.|-.|+++
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L---E~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL---EYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhcchhh---hhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccc
Confidence 24555556667777777777776555332 34566777888888887 7888888888888888888
Q ss_pred Ccccc-cccccccC--ceEEeecCcchhhhh-----hhhccceEEccCcccC-ccchhhhhCCCCCCEEEccCCcCCCCC
Q 039161 137 GRLEY-MGRAFCDE--SITVAMKGHDFQLQN-----IFVMFRAMDFSSNRFH-GEISEVLGNFKSLKVLNLSHNSLTGNI 207 (333)
Q Consensus 137 ~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 207 (333)
+|... +++..... .-....++.+....+ .+.+|++|++++.+-+ ..+|.++..+.+|..+|+|.|.+. ..
T Consensus 159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 76522 21111000 000111111111111 1345666666665433 356777888888888888888888 78
Q ss_pred ccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCC
Q 039161 208 PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 258 (333)
Q Consensus 208 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 258 (333)
|+++..+.+|+.|+||+|+|+ .+.-......+++.|+++.|+++ .+|..
T Consensus 238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~a 286 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDA 286 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHH
Confidence 888888888888999988888 55555666778888889998887 66643
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=2.7e-22 Score=167.75 Aligned_cols=247 Identities=18% Similarity=0.152 Sum_probs=189.5
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCC-CcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCC
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYS-NKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELK 80 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (333)
.++ +|+.|||++|+|+.+.|++|.++..+.+|-+.+ |+|+....++|.++..|+.|.+.-|++.-.....|..++++.
T Consensus 89 ~l~-~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~ 167 (498)
T KOG4237|consen 89 TLH-RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLS 167 (498)
T ss_pred chh-hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcc
Confidence 455 799999999999999999999999998887777 999977778999999999999999999988888999999999
Q ss_pred EEEcccCcCCCCCCCCCCcccCCcccEEEcCCCccccc------------CCcccccChHHhhhhcccCcc-cccccccc
Q 039161 81 ILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF------------LPRRIFPSMEAMKNVDEQGRL-EYMGRAFC 147 (333)
Q Consensus 81 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~------------~~~~~~~~l~~L~~l~~~~~~-~~~~~~~~ 147 (333)
.|.+.+|.+..+....+ ..+.+++.+.+..|.+... .|.+ ++...-.....+.... .++....+
T Consensus 168 lLslyDn~~q~i~~~tf--~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf 244 (498)
T KOG4237|consen 168 LLSLYDNKIQSICKGTF--QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKF 244 (498)
T ss_pred hhcccchhhhhhccccc--cchhccchHhhhcCccccccccchhhhHHhhchhh-cccceecchHHHHHHHhcccchhhh
Confidence 99999999988876666 7788899999888873311 0100 1111100000000000 00000000
Q ss_pred cC---ce--EE-----eecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCC
Q 039161 148 DE---SI--TV-----AMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 217 (333)
Q Consensus 148 ~~---~~--~~-----~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 217 (333)
.. .. .. .....+...+..+++|+.|+|++|+++++-+.+|.....+++|.|..|++...--..|.++..|
T Consensus 245 ~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L 324 (498)
T KOG4237|consen 245 LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL 324 (498)
T ss_pred hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc
Confidence 00 00 00 0011233445668999999999999999999999999999999999999987777789999999
Q ss_pred cEEeCCCCcCCCCCCCCccccCccceeecccCcce
Q 039161 218 ESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 252 (333)
Q Consensus 218 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 252 (333)
+.|+|.+|+|+..-|..|..+.+|..|++-.|++.
T Consensus 325 ~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 325 KTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred eeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999999999889999999999999999999986
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=1.3e-22 Score=170.14 Aligned_cols=219 Identities=23% Similarity=0.365 Sum_probs=137.2
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
.+++|++.+|++. ..|.+++.+..+..|+.++|++. ++|..+..+.+++.++.+.|.+. ..++.++.+..++.++..
T Consensus 69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence 4566666666665 44555666666666666666666 56666666666777777776665 455566666667777777
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccCceEEeecCcchhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDESITVAMKGHDFQLQN 164 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 164 (333)
+|+++..+++. ..+.++..+++.+|.++.. |..... ++.|++++...|.- .++ .. ..
T Consensus 146 ~N~i~slp~~~---~~~~~l~~l~~~~n~l~~l-~~~~i~-m~~L~~ld~~~N~L~tlP----------------~~-lg 203 (565)
T KOG0472|consen 146 NNQISSLPEDM---VNLSKLSKLDLEGNKLKAL-PENHIA-MKRLKHLDCNSNLLETLP----------------PE-LG 203 (565)
T ss_pred ccccccCchHH---HHHHHHHHhhccccchhhC-CHHHHH-HHHHHhcccchhhhhcCC----------------hh-hc
Confidence 77666655443 3455666677777776633 333233 66666666544321 111 11 11
Q ss_pred hhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccc-cccCCCCcEEeCCCCcCCCCCCCCccccCccce
Q 039161 165 IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQLLSVTALAL 243 (333)
Q Consensus 165 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 243 (333)
.+.+|..|++.+|++. .+| .|..+..|++++++.|++. .+|.. ...++++..|||.+|+++ ..|+.+.-+++|.+
T Consensus 204 ~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~r 279 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLER 279 (565)
T ss_pred chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhh
Confidence 1556666777777776 666 4677777777777777776 34433 346777777777777777 67777777777777
Q ss_pred eecccCccee
Q 039161 244 LNLSYNRLWG 253 (333)
Q Consensus 244 L~l~~N~l~~ 253 (333)
||+++|.|++
T Consensus 280 LDlSNN~is~ 289 (565)
T KOG0472|consen 280 LDLSNNDISS 289 (565)
T ss_pred hcccCCcccc
Confidence 7777777763
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=3.8e-21 Score=161.32 Aligned_cols=264 Identities=25% Similarity=0.363 Sum_probs=172.7
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
.|++|.++.|++...+.+...+++++..|||..|+++ ..|+.++.+.+|++||+++|.|+ ..|.+++++ .|+.|.+.
T Consensus 229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALE 305 (565)
T ss_pred HHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhc
Confidence 4677777777777444455568889999999999998 78888888999999999999998 577788888 89999998
Q ss_pred cCcCCC-------------------------CC-------------CCCCC-cccCCcccEEEcCCCcccccCCcccccC
Q 039161 86 SNQFDC-------------------------PP-------------CNSNI-TFPFQALRIIDLSHTEFTGFLPRRIFPS 126 (333)
Q Consensus 86 ~n~l~~-------------------------~~-------------~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 126 (333)
+|.+.. .. ...+. ....-+.+.|+++.-+++ .+|+++|..
T Consensus 306 GNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea 384 (565)
T KOG0472|consen 306 GNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEA 384 (565)
T ss_pred CCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHH
Confidence 887621 00 00000 011335667777777777 677766654
Q ss_pred hHH--hhhhcccCcc-ccccc-------ccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEE
Q 039161 127 MEA--MKNVDEQGRL-EYMGR-------AFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVL 196 (333)
Q Consensus 127 l~~--L~~l~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 196 (333)
.++ +..++++.|. ..++. ....-.......++.......+++|..|++++|-+. .+|..++.+..|+.|
T Consensus 385 ~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~L 463 (565)
T KOG0472|consen 385 AKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTL 463 (565)
T ss_pred hhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhhee
Confidence 431 2223333321 00100 000000011112334445555788888999888887 778888888889999
Q ss_pred EccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCC
Q 039161 197 NLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLC 276 (333)
Q Consensus 197 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~ 276 (333)
+++.|+|. .+|....-+..++.+-.++|++....++.+..+.+|..||+.+|.+. +||.. +..........+.
T Consensus 464 nlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~-----LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 464 NLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI-----LGNMTNLRHLELD 536 (565)
T ss_pred cccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh-----hccccceeEEEec
Confidence 99998887 66777766666777766777777666666777777777888887776 55553 2333344555667
Q ss_pred CCCCC
Q 039161 277 GEPLT 281 (333)
Q Consensus 277 g~~~~ 281 (333)
|||+.
T Consensus 537 gNpfr 541 (565)
T KOG0472|consen 537 GNPFR 541 (565)
T ss_pred CCccC
Confidence 77765
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=9.9e-19 Score=164.72 Aligned_cols=208 Identities=25% Similarity=0.415 Sum_probs=146.5
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
+|++++.|+|++|.++. +|..+. .+|++|++++|+++ .+|..+. .+|+.|+|++|.+. .+|..+. .+|+.|
T Consensus 197 Ip~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L 267 (754)
T PRK15370 197 IPEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSL 267 (754)
T ss_pred cccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEE
Confidence 45678899999998884 444443 58999999999888 5666554 37899999999988 5666554 579999
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-cccccccCceEEeecCcchh
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGRAFCDESITVAMKGHDFQ 161 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 161 (333)
++++|+++..+. .+ .++|+.|++++|+++ .+|..+. .+|+.+++.+|... ++
T Consensus 268 ~Ls~N~L~~LP~-~l----~~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~LP------------------ 320 (754)
T PRK15370 268 DLFHNKISCLPE-NL----PEELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTALP------------------ 320 (754)
T ss_pred ECcCCccCcccc-cc----CCCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccccCC------------------
Confidence 999998886543 22 257999999999888 4554432 35666666554211 10
Q ss_pred hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcc
Q 039161 162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241 (333)
Q Consensus 162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 241 (333)
...+++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+. ..|
T Consensus 321 -~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL 390 (754)
T PRK15370 321 -ETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AAL 390 (754)
T ss_pred -ccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHH
Confidence 011457888888888888 4565543 68888888888887 4565543 67888888888888 4555443 368
Q ss_pred ceeecccCcceecCCC
Q 039161 242 ALLNLSYNRLWGRIPR 257 (333)
Q Consensus 242 ~~L~l~~N~l~~~~p~ 257 (333)
+.|++++|+++ .+|.
T Consensus 391 ~~LdLs~N~L~-~LP~ 405 (754)
T PRK15370 391 QIMQASRNNLV-RLPE 405 (754)
T ss_pred HHHhhccCCcc-cCch
Confidence 88888888887 5554
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=2.2e-18 Score=161.64 Aligned_cols=83 Identities=30% Similarity=0.357 Sum_probs=61.5
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
+.+|+.|++++|.++ .+|.. .++|+.|++++|++++ +|... .+|+.|++++|+++ .+|..+..+++|+.++
T Consensus 381 ~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 381 PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVN 451 (788)
T ss_pred ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence 456788888888887 44442 3578888888888874 45432 46778888888888 6788888888888888
Q ss_pred cccCcceecCCC
Q 039161 246 LSYNRLWGRIPR 257 (333)
Q Consensus 246 l~~N~l~~~~p~ 257 (333)
+++|++++.+|.
T Consensus 452 Ls~N~Ls~~~~~ 463 (788)
T PRK15387 452 LEGNPLSERTLQ 463 (788)
T ss_pred CCCCCCCchHHH
Confidence 888888876665
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=3.7e-20 Score=169.90 Aligned_cols=241 Identities=23% Similarity=0.334 Sum_probs=133.6
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+++.|+...|.++...+. ..-.+|+++++++|+++ .+|+.+..+.+|+.++..+|+++ .+|..+..+.+|+.|.+.
T Consensus 220 ~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAA 295 (1081)
T ss_pred chheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhh
Confidence 455555555555522221 12345666666666666 34455566666666666666664 455555555666666666
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHH-hhhhcccCcccccccccccC---------ceEEee
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEA-MKNVDEQGRLEYMGRAFCDE---------SITVAM 155 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~~~~~---------~~~~~~ 155 (333)
.|.+..+++.- .+..+|++|++..|++. .+|...+..... +..++...+........... ...-..
T Consensus 296 ~nel~yip~~l---e~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 296 YNELEYIPPFL---EGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhhhCCCcc---cccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 66655554332 34556666666666655 444333322222 33333222110000000000 000001
Q ss_pred cCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCc
Q 039161 156 KGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL 235 (333)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 235 (333)
..........+..|+.|+|++|++.......+.++..|++|+||+|.++ .+|..+..+..|++|...+|++. ..| .+
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~ 448 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL 448 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence 1112222233567788888888777444556777778888888888887 56677777777777777777777 666 56
Q ss_pred cccCccceeecccCccee-cCCC
Q 039161 236 LSVTALALLNLSYNRLWG-RIPR 257 (333)
Q Consensus 236 ~~l~~L~~L~l~~N~l~~-~~p~ 257 (333)
..++.|+.+|++.|+++. .+|.
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhh
Confidence 778888999999998863 3443
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=1.4e-17 Score=156.30 Aligned_cols=77 Identities=34% Similarity=0.417 Sum_probs=41.1
Q ss_pred CCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCcccccccc
Q 039161 192 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIG 271 (333)
Q Consensus 192 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~ 271 (333)
+|+.|++++|++++ +|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|.. +.......
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~s-----l~~L~~L~ 448 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPES-----LIHLSSET 448 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChH-----HhhccCCC
Confidence 45555555555553 3322 245666666666666 34432 234566677777765 55542 22223334
Q ss_pred ccCCCCCCCCC
Q 039161 272 NIRLCGEPLTV 282 (333)
Q Consensus 272 ~~~l~g~~~~~ 282 (333)
.+.+.+|+++.
T Consensus 449 ~LdLs~N~Ls~ 459 (788)
T PRK15387 449 TVNLEGNPLSE 459 (788)
T ss_pred eEECCCCCCCc
Confidence 55677777764
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=4.9e-20 Score=137.66 Aligned_cols=185 Identities=28% Similarity=0.465 Sum_probs=149.9
Q ss_pred hhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCc
Q 039161 25 FANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA 104 (333)
Q Consensus 25 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 104 (333)
+.++.+.+.|.||+|+++ .+|..+..+.+|+.|++++|+++ ..|..++.+++|+.|+++-|++...+.+ | +.++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprg-f--gs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRG-F--GSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccc-c--CCCch
Confidence 346889999999999999 56667899999999999999998 6888999999999999999998866543 4 78999
Q ss_pred ccEEEcCCCccccc-CCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccc
Q 039161 105 LRIIDLSHTEFTGF-LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183 (333)
Q Consensus 105 L~~L~ls~n~l~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 183 (333)
|+.||++.|++... +|..+| . +..|+.|++++|.+. .+
T Consensus 104 levldltynnl~e~~lpgnff-~---------------------------------------m~tlralyl~dndfe-~l 142 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFF-Y---------------------------------------MTTLRALYLGDNDFE-IL 142 (264)
T ss_pred hhhhhccccccccccCCcchh-H---------------------------------------HHHHHHHHhcCCCcc-cC
Confidence 99999999988643 343322 1 455677788899998 78
Q ss_pred hhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCc---cceeecccCcceecCCC
Q 039161 184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA---LALLNLSYNRLWGRIPR 257 (333)
Q Consensus 184 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~l~~N~l~~~~p~ 257 (333)
|..++++++|+.|.+.+|.+- ..|..++.++.|++|.+.+|+++ .+|..+.++.- -+.+.+.+|.+...|..
T Consensus 143 p~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred ChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 888999999999999999998 78999999999999999999999 66665555432 24566777877544433
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=4.6e-17 Score=162.90 Aligned_cols=226 Identities=19% Similarity=0.221 Sum_probs=136.9
Q ss_pred cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161 4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV 83 (333)
Q Consensus 4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 83 (333)
|.+|+.|.+.++.++ ..|..| ...+|++|++++|++. .++..+..+++|+.|+|+++.....+| .+..+++|++|+
T Consensus 588 p~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~ 663 (1153)
T PLN03210 588 PPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLK 663 (1153)
T ss_pred CcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEE
Confidence 445667777766665 444444 3567777777777766 455566667777777777665433444 356667777777
Q ss_pred cccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhh
Q 039161 84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQ 163 (333)
Q Consensus 84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (333)
+++|......|..+ ..+++|+.|++++|.....+|..+ .+++|+.+.+.++.. +. .+.
T Consensus 664 L~~c~~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~-L~-----------------~~p 721 (1153)
T PLN03210 664 LSDCSSLVELPSSI--QYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSR-LK-----------------SFP 721 (1153)
T ss_pred ecCCCCccccchhh--hccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCC-cc-----------------ccc
Confidence 77665444444444 566777777777664444555432 455666665554321 00 001
Q ss_pred hhhhccceEEccCcccCccchh------------------------------hhhCCCCCCEEEccCCcCCCCCcccccc
Q 039161 164 NIFVMFRAMDFSSNRFHGEISE------------------------------VLGNFKSLKVLNLSHNSLTGNIPVSFEN 213 (333)
Q Consensus 164 ~~~~~L~~L~ls~n~l~~~~~~------------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 213 (333)
....+|+.|++++|.+. .+|. ....+++|+.|++++|.....+|..+++
T Consensus 722 ~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~ 800 (1153)
T PLN03210 722 DISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN 800 (1153)
T ss_pred cccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC
Confidence 11234444444444443 2221 1223457888888888777778888888
Q ss_pred CCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCC
Q 039161 214 MTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 257 (333)
Q Consensus 214 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 257 (333)
+++|+.|++++|.....+|... .+++|+.|++++|.....+|.
T Consensus 801 L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence 8889999988875444667655 678888888888765445553
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=2.2e-16 Score=158.04 Aligned_cols=235 Identities=15% Similarity=0.176 Sum_probs=149.1
Q ss_pred cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161 4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV 83 (333)
Q Consensus 4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 83 (333)
|++|+.|++++|.+. .++..+..+++|++|+|+++...+.+|. +..+++|+.|+|++|.....+|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 357999999999987 5667778899999999998765556774 78889999999999876667888899999999999
Q ss_pred cccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcc-ccccccccc-CceEE--------
Q 039161 84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRL-EYMGRAFCD-ESITV-------- 153 (333)
Q Consensus 84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~-~~~~~~~~~-~~~~~-------- 153 (333)
+++|......|.. ..+++|+.|++++|.....+|.. ..+|+.+++..+. ..++..... .....
T Consensus 688 L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 688 MSRCENLEILPTG---INLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCCCcCccCCc---CCCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccccccccccccccccccccccchh
Confidence 9986533333322 25778888888887655454431 2344455444432 111100000 00000
Q ss_pred ----eecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCC-------------
Q 039161 154 ----AMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA------------- 216 (333)
Q Consensus 154 ----~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------------- 216 (333)
............+++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 0000011111224678888888887666788888888888888888875433455443 3444
Q ss_pred --------CcEEeCCCCcCCCCCCCCccccCccceeecccC
Q 039161 217 --------LESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 249 (333)
Q Consensus 217 --------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N 249 (333)
|+.|+|++|.++ .+|..+..+++|+.|++++|
T Consensus 840 ~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 840 TFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred cccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 445555555555 45555666666666766663
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=3.5e-17 Score=154.33 Aligned_cols=205 Identities=23% Similarity=0.343 Sum_probs=155.4
Q ss_pred CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84 (333)
Q Consensus 5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 84 (333)
++|++|++++|+++. +|..+. .+|+.|+|++|.++ .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++
T Consensus 220 ~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSV 290 (754)
T ss_pred cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEEC
Confidence 479999999999984 565553 47999999999998 6777664 48999999999998 4676554 58999999
Q ss_pred ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhh
Q 039161 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQN 164 (333)
Q Consensus 85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (333)
++|+++..+.. + .++|+.|++++|.++ .+|..+. ++|+.|.+.++.-. ..+. .
T Consensus 291 s~N~Lt~LP~~-l----p~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt---------------~LP~---~ 343 (754)
T PRK15370 291 YDNSIRTLPAH-L----PSGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALT---------------SLPA---S 343 (754)
T ss_pred CCCccccCccc-c----hhhHHHHHhcCCccc-cCCcccc---ccceeccccCCccc---------------cCCh---h
Confidence 99999876532 1 257999999999998 4665433 45666666554210 0111 1
Q ss_pred hhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCc----cccCc
Q 039161 165 IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL----LSVTA 240 (333)
Q Consensus 165 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~ 240 (333)
.+++|+.|++++|+++ .+|..+. +.|+.|++++|+++. +|..+. ..|+.|++++|++. .+|..+ ...+.
T Consensus 344 l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~ 416 (754)
T PRK15370 344 LPPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQ 416 (754)
T ss_pred hcCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCC
Confidence 2468999999999998 5676553 689999999999994 555554 46999999999998 556544 34577
Q ss_pred cceeecccCcce
Q 039161 241 LALLNLSYNRLW 252 (333)
Q Consensus 241 L~~L~l~~N~l~ 252 (333)
+..+++.+|+++
T Consensus 417 l~~L~L~~Npls 428 (754)
T PRK15370 417 PTRIIVEYNPFS 428 (754)
T ss_pred ccEEEeeCCCcc
Confidence 899999999996
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=3.1e-19 Score=133.41 Aligned_cols=179 Identities=24% Similarity=0.388 Sum_probs=146.3
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+++.|.|++|.++.. |..++.+.+|+.|++++|+++ .+|.+++.+++|+.|++.-|++. ..|..|+.++.|+.||++
T Consensus 34 ~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 578899999999954 555889999999999999999 78889999999999999999998 789999999999999999
Q ss_pred cCcCCCC-CCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhh
Q 039161 86 SNQFDCP-PCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQN 164 (333)
Q Consensus 86 ~n~l~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (333)
+|++... .|+.| ..++.|+.|+++.|.+. .+|..+..
T Consensus 111 ynnl~e~~lpgnf--f~m~tlralyl~dndfe-~lp~dvg~--------------------------------------- 148 (264)
T KOG0617|consen 111 YNNLNENSLPGNF--FYMTTLRALYLGDNDFE-ILPPDVGK--------------------------------------- 148 (264)
T ss_pred ccccccccCCcch--hHHHHHHHHHhcCCCcc-cCChhhhh---------------------------------------
Confidence 9998753 45555 67889999999999988 66654221
Q ss_pred hhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCC---CCcEEeCCCCcCCCCCC
Q 039161 165 IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT---ALESLDLSFNKLDGRIP 232 (333)
Q Consensus 165 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~Ls~n~l~~~~~ 232 (333)
+.+|+.|.+.+|.+- .+|..++.++.|++|++.+|+++ .+|..++.+. +-....+.+|.+...+.
T Consensus 149 -lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 149 -LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred -hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 678899999999988 88999999999999999999999 5665555432 22334555665554333
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=1.6e-18 Score=151.00 Aligned_cols=233 Identities=23% Similarity=0.221 Sum_probs=145.7
Q ss_pred cccEEECcCCccccc----cchhhhCCCCccEEECCCCcCcC------CCChhhcCCCCCcEEEccCCcCCCcccccccC
Q 039161 6 ELITLHLENNSLEGH----IHNTFANASHLRSLDLYSNKLEG------PLPRSLAKYIKLEVVNVENNMISDSFPCWMGS 75 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 75 (333)
.|++|+++++.++.. ++..+...+.+++|+++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 588999999988532 44556677889999999988762 23446677889999999999987655555555
Q ss_pred CCC---CCEEEcccCcCCCCCCCCC--CcccC-CcccEEEcCCCcccccCCccc---ccChHHhhhhcccCccccccccc
Q 039161 76 LSE---LKILVLRSNQFDCPPCNSN--ITFPF-QALRIIDLSHTEFTGFLPRRI---FPSMEAMKNVDEQGRLEYMGRAF 146 (333)
Q Consensus 76 l~~---L~~L~L~~n~l~~~~~~~~--~~~~l-~~L~~L~ls~n~l~~~~~~~~---~~~l~~L~~l~~~~~~~~~~~~~ 146 (333)
+.+ |++|++++|++.+...... ....+ ++|+.|++++|.+++.....+ +..+..|+.+++.++.-.-
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---- 179 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD---- 179 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch----
Confidence 554 9999999998764221111 01334 789999999998885322221 2223345555544331000
Q ss_pred ccCceEEeecCcchhhh---hhhhccceEEccCcccCcc----chhhhhCCCCCCEEEccCCcCCCCCccccc-----cC
Q 039161 147 CDESITVAMKGHDFQLQ---NIFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNSLTGNIPVSFE-----NM 214 (333)
Q Consensus 147 ~~~~~~~~~~~~~~~~~---~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l 214 (333)
.....+. ...+.|+.|++++|.+++. ++..+..+++|++|++++|.+++.....+. ..
T Consensus 180 ----------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 180 ----------AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN 249 (319)
T ss_pred ----------HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence 0000111 1134788888888877633 233455677788888888877753222222 13
Q ss_pred CCCcEEeCCCCcCCC----CCCCCccccCccceeecccCcce
Q 039161 215 TALESLDLSFNKLDG----RIPEQLLSVTALALLNLSYNRLW 252 (333)
Q Consensus 215 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~ 252 (333)
+.|++|++++|.+++ .+...+..+++|+.+++++|.++
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 678888888887763 12334445567888888888876
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=1.7e-18 Score=159.08 Aligned_cols=243 Identities=23% Similarity=0.311 Sum_probs=182.3
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
.|+++....|++.... -.-++|+.|+.++|.++...+. ..-.+|++++++.|+++ .+|+|++.+.+|+.++..
T Consensus 200 ~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNAN 272 (1081)
T ss_pred chhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEeccc
Confidence 5666666666665322 1347899999999999833332 22358999999999999 577999999999999999
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcc-ccccccccc---------CceEEee
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRL-EYMGRAFCD---------ESITVAM 155 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~-~~~~~~~~~---------~~~~~~~ 155 (333)
+|++...+... ...++|+.|.+..|.+. .+|.. ...++.|+.|++..+. ...+...+. .......
T Consensus 273 ~N~l~~lp~ri---~~~~~L~~l~~~~nel~-yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l 347 (1081)
T KOG0618|consen 273 HNRLVALPLRI---SRITSLVSLSAAYNELE-YIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL 347 (1081)
T ss_pred chhHHhhHHHH---hhhhhHHHHHhhhhhhh-hCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc
Confidence 99997665444 56789999999999998 45543 5568888888876543 333321110 0000111
Q ss_pred cCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCc
Q 039161 156 KGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL 235 (333)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 235 (333)
...+..-....+.|+.|.+.+|.+++..-..+..+++|+.|+|++|++.......+.+++.|++|+||+|+++ .+|..+
T Consensus 348 ~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 348 STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence 1112222233678999999999999877777889999999999999999777778899999999999999999 788999
Q ss_pred cccCccceeecccCcceecCCCCCccC
Q 039161 236 LSVTALALLNLSYNRLWGRIPRGNQFN 262 (333)
Q Consensus 236 ~~l~~L~~L~l~~N~l~~~~p~~~~~~ 262 (333)
..+..|+.|...+|.+. ..|...++.
T Consensus 427 a~~~~L~tL~ahsN~l~-~fPe~~~l~ 452 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLL-SFPELAQLP 452 (1081)
T ss_pred HhhhhhHHHhhcCCcee-echhhhhcC
Confidence 99999999999999998 667544443
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=1.1e-17 Score=145.89 Aligned_cols=235 Identities=20% Similarity=0.208 Sum_probs=158.3
Q ss_pred cccEEECcCCccc------cccchhhhCCCCccEEECCCCcCcCCCChhhcCCCC---CcEEEccCCcCCCc----cccc
Q 039161 6 ELITLHLENNSLE------GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIK---LEVVNVENNMISDS----FPCW 72 (333)
Q Consensus 6 ~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~----~~~~ 72 (333)
.+++++++++.+. ...+..+..+++|++|++++|.+.+..+..+..+.. |++|++++|++++. +...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 6899999998876 233456778899999999999998666666666555 99999999998742 2334
Q ss_pred ccCC-CCCCEEEcccCcCCCCCCCCC--CcccCCcccEEEcCCCcccccCCcccccCh---HHhhhhcccCccccccccc
Q 039161 73 MGSL-SELKILVLRSNQFDCPPCNSN--ITFPFQALRIIDLSHTEFTGFLPRRIFPSM---EAMKNVDEQGRLEYMGRAF 146 (333)
Q Consensus 73 ~~~l-~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l---~~L~~l~~~~~~~~~~~~~ 146 (333)
+..+ ++|+.|++++|.+++.....+ .+..+++|++|++++|.+++.....+...+ +.|+.+++.++...-. .
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~--~ 209 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE--G 209 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH--H
Confidence 5566 899999999999885322111 124567899999999988853222222223 3666666655421000 0
Q ss_pred ccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhC-----CCCCCEEEccCCcCCCC----CccccccCCCC
Q 039161 147 CDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGN-----FKSLKVLNLSHNSLTGN----IPVSFENMTAL 217 (333)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L 217 (333)
..........+++|+.|++++|.+++.....+.. .+.|++|++++|.++.. +...+..+++|
T Consensus 210 ---------~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L 280 (319)
T cd00116 210 ---------ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESL 280 (319)
T ss_pred ---------HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCc
Confidence 0000111223678999999999998643333322 37999999999999732 33455667899
Q ss_pred cEEeCCCCcCCCC----CCCCcccc-CccceeecccCcc
Q 039161 218 ESLDLSFNKLDGR----IPEQLLSV-TALALLNLSYNRL 251 (333)
Q Consensus 218 ~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~l~~N~l 251 (333)
+.+++++|.++.. ....+... +.++.+++.+|++
T Consensus 281 ~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 281 LELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 9999999999864 33334444 6788888888764
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=4.5e-15 Score=139.27 Aligned_cols=117 Identities=36% Similarity=0.573 Sum_probs=101.3
Q ss_pred ccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecc
Q 039161 168 MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 247 (333)
Q Consensus 168 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 247 (333)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceecCCCCCcc--CCccccccccccCCCCCCCCCCC
Q 039161 248 YNRLWGRIPRGNQF--NTFQNDSYIGNIRLCGEPLTVRC 284 (333)
Q Consensus 248 ~N~l~~~~p~~~~~--~~~~~~~~~~~~~l~g~~~~~~C 284 (333)
+|.++|.+|....- .......+.+|..+||.|....|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 99999999976432 12234456677777776544444
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.39 E-value=5.1e-13 Score=119.88 Aligned_cols=197 Identities=32% Similarity=0.434 Sum_probs=122.1
Q ss_pred EEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCC-CCcEEEccCCcCCCcccccccCCCCCCEEEcccC
Q 039161 9 TLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYI-KLEVVNVENNMISDSFPCWMGSLSELKILVLRSN 87 (333)
Q Consensus 9 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 87 (333)
.+++..+.+... ...+...+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 356666665322 223445577888888888887 4555555553 7888888888877 44456777888888888888
Q ss_pred cCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhh
Q 039161 88 QFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFV 167 (333)
Q Consensus 88 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (333)
++...++.. ...+.|+.|++++|.++ .+|... .. +.
T Consensus 174 ~l~~l~~~~---~~~~~L~~L~ls~N~i~-~l~~~~-~~---------------------------------------~~ 209 (394)
T COG4886 174 DLSDLPKLL---SNLSNLNNLDLSGNKIS-DLPPEI-EL---------------------------------------LS 209 (394)
T ss_pred hhhhhhhhh---hhhhhhhheeccCCccc-cCchhh-hh---------------------------------------hh
Confidence 887766442 25677888888888877 444321 11 33
Q ss_pred ccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecc
Q 039161 168 MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 247 (333)
Q Consensus 168 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 247 (333)
.|+++.+++|.+. ..+..+..++++..+.+++|++. ..+..++.++.++.|++++|.++. ++. +....+++.++++
T Consensus 210 ~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s 285 (394)
T COG4886 210 ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLS 285 (394)
T ss_pred hhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEecc
Confidence 4556666666433 34444556666666666666665 334555666666666666666663 322 5566666666666
Q ss_pred cCcceecCC
Q 039161 248 YNRLWGRIP 256 (333)
Q Consensus 248 ~N~l~~~~p 256 (333)
+|.++...|
T Consensus 286 ~n~~~~~~~ 294 (394)
T COG4886 286 GNSLSNALP 294 (394)
T ss_pred Cccccccch
Confidence 666654333
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=1.5e-14 Score=127.13 Aligned_cols=88 Identities=26% Similarity=0.349 Sum_probs=48.8
Q ss_pred CCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccE
Q 039161 28 ASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRI 107 (333)
Q Consensus 28 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 107 (333)
+..-...|++.|++. ++|..++.+..|+.+.|..|.+. .+|..+..+..|.+++++.|+++..+.... .--|+.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC----~lpLkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLC----DLPLKV 147 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhh----cCccee
Confidence 333445566666665 45555666666666666666655 455556666666666666666655544321 123555
Q ss_pred EEcCCCcccccCCcc
Q 039161 108 IDLSHTEFTGFLPRR 122 (333)
Q Consensus 108 L~ls~n~l~~~~~~~ 122 (333)
|-+++|+++ .+|..
T Consensus 148 li~sNNkl~-~lp~~ 161 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEE 161 (722)
T ss_pred EEEecCccc-cCCcc
Confidence 566666665 44443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=1e-14 Score=128.15 Aligned_cols=192 Identities=23% Similarity=0.383 Sum_probs=151.1
Q ss_pred ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS 86 (333)
Q Consensus 7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 86 (333)
....||+.|.+. ++|..+..+..|+.+.|.+|.+. .+|.++..+..|.+|||+.|+++ ..|..++.++ |+.|.+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 456788999998 77877888889999999999998 78889999999999999999998 6777777766 89999999
Q ss_pred CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhh
Q 039161 87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIF 166 (333)
Q Consensus 87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (333)
|+++..+... +....|..||.+.|.+. .+|.. ... +
T Consensus 153 Nkl~~lp~~i---g~~~tl~~ld~s~nei~-slpsq-l~~---------------------------------------l 188 (722)
T KOG0532|consen 153 NKLTSLPEEI---GLLPTLAHLDVSKNEIQ-SLPSQ-LGY---------------------------------------L 188 (722)
T ss_pred CccccCCccc---ccchhHHHhhhhhhhhh-hchHH-hhh---------------------------------------H
Confidence 9998777654 46788999999999887 44433 122 4
Q ss_pred hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCc---cce
Q 039161 167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA---LAL 243 (333)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~ 243 (333)
.+|+.|.++.|++. .+|..+..+ .|..||++.|+++ .+|..|..|..|++|.|.+|.+. ..|..+...-. .++
T Consensus 189 ~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKY 264 (722)
T ss_pred HHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeee
Confidence 55666777888887 666667754 4899999999999 78999999999999999999998 55555443322 355
Q ss_pred eecccCc
Q 039161 244 LNLSYNR 250 (333)
Q Consensus 244 L~l~~N~ 250 (333)
|+..-++
T Consensus 265 L~~qA~q 271 (722)
T KOG0532|consen 265 LSTQACQ 271 (722)
T ss_pred ecchhcc
Confidence 6666553
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.31 E-value=7.5e-12 Score=117.72 Aligned_cols=111 Identities=26% Similarity=0.338 Sum_probs=88.4
Q ss_pred ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS 86 (333)
Q Consensus 7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 86 (333)
++.|+|++|.+.+..|..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|.+++.+|..+..+++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcCCCCCCCCCCcccCCcccEEEcCCCccccc
Q 039161 87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118 (333)
Q Consensus 87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 118 (333)
|.+++..|..+. ....++..+++.+|...+.
T Consensus 500 N~l~g~iP~~l~-~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 500 NSLSGRVPAALG-GRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcccccCChHHh-hccccCceEEecCCccccC
Confidence 888887776541 1234566778887765433
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=7.6e-12 Score=97.29 Aligned_cols=105 Identities=23% Similarity=0.278 Sum_probs=40.3
Q ss_pred cccEEECcCCccccccchhhh-CCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccc-cCCCCCCEEE
Q 039161 6 ELITLHLENNSLEGHIHNTFA-NASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWM-GSLSELKILV 83 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 83 (333)
.+++|+|.+|.|+.+. .++ .+.+|+.|++++|.|+. +. .+..++.|++|++++|+|+.. ...+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc--chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 5788999999988542 344 57889999999999984 33 477889999999999999854 3334 3588999999
Q ss_pred cccCcCCCCCCCCCCcccCCcccEEEcCCCccc
Q 039161 84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT 116 (333)
Q Consensus 84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 116 (333)
+++|++.....-. ....+++|+.|++.+|.++
T Consensus 95 L~~N~I~~l~~l~-~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELE-PLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCG-GGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhH-HHHcCCCcceeeccCCccc
Confidence 9999987765432 2357889999999999887
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.25 E-value=6.8e-12 Score=112.59 Aligned_cols=180 Identities=28% Similarity=0.435 Sum_probs=135.2
Q ss_pred cccEEECcCCccccccchhhhCCC-CccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161 6 ELITLHLENNSLEGHIHNTFANAS-HLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 84 (333)
.++.|++.+|.++.+.+ ....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|......++|+.|++
T Consensus 117 ~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 68899999999995544 455563 9999999999998 56667889999999999999999 45655557899999999
Q ss_pred ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhh
Q 039161 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQN 164 (333)
Q Consensus 85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (333)
++|+++..++.. .....|+++.+++|.+..... . ...
T Consensus 194 s~N~i~~l~~~~---~~~~~L~~l~~~~N~~~~~~~-~-~~~-------------------------------------- 230 (394)
T COG4886 194 SGNKISDLPPEI---ELLSALEELDLSNNSIIELLS-S-LSN-------------------------------------- 230 (394)
T ss_pred cCCccccCchhh---hhhhhhhhhhhcCCcceecch-h-hhh--------------------------------------
Confidence 999999887542 234569999999996331211 1 111
Q ss_pred hhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCc
Q 039161 165 IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL 235 (333)
Q Consensus 165 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 235 (333)
...+..+.+.+|++. ..+..+..++.++.|++++|.++.... ++.+.+++.|++++|.+....+...
T Consensus 231 -~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 231 -LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred -cccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 345555667777766 446667788888899999888884433 7788888999999888876555543
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.5e-12 Score=111.24 Aligned_cols=209 Identities=18% Similarity=0.180 Sum_probs=118.8
Q ss_pred CCCCccEEECCCCcCcCCCC--hhhcCCCCCcEEEccCCcCCCc--ccccccCCCCCCEEEcccCcCCCCCCCCCCcccC
Q 039161 27 NASHLRSLDLYSNKLEGPLP--RSLAKYIKLEVVNVENNMISDS--FPCWMGSLSELKILVLRSNQFDCPPCNSNITFPF 102 (333)
Q Consensus 27 ~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 102 (333)
++..|+...|.++.+. ..+ .....|++++.|||+.|-+... +......+++|+.|+|+.|++........ ...+
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLL 196 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhh
Confidence 4566666666666654 222 2445566677777776665532 12234456677777777776653332221 1345
Q ss_pred CcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCcc
Q 039161 103 QALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182 (333)
Q Consensus 103 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 182 (333)
+.|+.|.++.|.++......+...+++++.|.+..|.... ........+..|++|||++|++...
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~---------------~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL---------------IKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc---------------eecchhhhhhHHhhccccCCccccc
Confidence 6677777777766633333344444555555554432000 0001112266788888888877632
Q ss_pred c-hhhhhCCCCCCEEEccCCcCCCC-Cccc-----cccCCCCcEEeCCCCcCCCC-CCCCccccCccceeecccCcce
Q 039161 183 I-SEVLGNFKSLKVLNLSHNSLTGN-IPVS-----FENMTALESLDLSFNKLDGR-IPEQLLSVTALALLNLSYNRLW 252 (333)
Q Consensus 183 ~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-----~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~ 252 (333)
. -...+.++.|..|+++.+.+..+ .|+. ...+++|+.|+++.|.|... .-..+..+++|+.+....|.++
T Consensus 262 ~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 262 DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 2 13466788888888888887743 2222 24567888888888888631 1223445566777777777775
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.6e-12 Score=111.10 Aligned_cols=207 Identities=19% Similarity=0.192 Sum_probs=142.0
Q ss_pred cccEEECcCCccccccc-hhhhCCCCccEEECCCCcCcCCC--ChhhcCCCCCcEEEccCCcCCCccccc-ccCCCCCCE
Q 039161 6 ELITLHLENNSLEGHIH-NTFANASHLRSLDLYSNKLEGPL--PRSLAKYIKLEVVNVENNMISDSFPCW-MGSLSELKI 81 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~ 81 (333)
+|+...|.+........ .....+++++.|||++|-+.... -.....+++|+.|+++.|++.-..... -..+++|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 68888888887763322 45667999999999999887332 234467899999999999987432221 125689999
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccCceEEeecCcch
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDESITVAMKGHDF 160 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 160 (333)
|.|+.|.++...-... ...+|+|+.|+++.|....... .-...+..|+.|++.+|.. +.. ..
T Consensus 202 L~l~~CGls~k~V~~~-~~~fPsl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~---------------~~ 264 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWI-LLTFPSLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFD---------------QG 264 (505)
T ss_pred EEeccCCCCHHHHHHH-HHhCCcHHHhhhhcccccceec-chhhhhhHHhhccccCCcccccc---------------cc
Confidence 9999999874332221 2568999999999995322222 2256677888888877641 111 11
Q ss_pred hhhhhhhccceEEccCcccCcc-chhh-----hhCCCCCCEEEccCCcCCCC-CccccccCCCCcEEeCCCCcCCC
Q 039161 161 QLQNIFVMFRAMDFSSNRFHGE-ISEV-----LGNFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSFNKLDG 229 (333)
Q Consensus 161 ~~~~~~~~L~~L~ls~n~l~~~-~~~~-----~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~ 229 (333)
.....++.|+.|+++.+.+... .|+. ...+++|++|++..|++... --..+..+++|++|....|.+..
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 1122378899999999988732 2322 45789999999999999632 12345567888899988998874
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.21 E-value=1.1e-11 Score=79.57 Aligned_cols=60 Identities=30% Similarity=0.461 Sum_probs=45.8
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcC
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMI 65 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 65 (333)
+|++|++++|+++.+.+++|.++++|++|++++|+++...+.+|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 677788888877777777777777777777777777766667777777777777777764
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=3.2e-12 Score=106.35 Aligned_cols=235 Identities=20% Similarity=0.232 Sum_probs=154.2
Q ss_pred cccEEECcCCccccccc----hhhhCCCCccEEECCCC---cCcCCCCh-------hhcCCCCCcEEEccCCcCCCcccc
Q 039161 6 ELITLHLENNSLEGHIH----NTFANASHLRSLDLYSN---KLEGPLPR-------SLAKYIKLEVVNVENNMISDSFPC 71 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n---~l~~~~p~-------~~~~l~~L~~L~L~~n~l~~~~~~ 71 (333)
.++.++|++|.|...-. ..+++.++|+..+++.- .+...+|. ++.++++|++|+||+|.+....+.
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 68899999999974433 44567789999999863 22234444 345678999999999998865554
Q ss_pred c----ccCCCCCCEEEcccCcCCCCCCCC-----------CCcccCCcccEEEcCCCcccccCCc---ccccChHHhhhh
Q 039161 72 W----MGSLSELKILVLRSNQFDCPPCNS-----------NITFPFQALRIIDLSHTEFTGFLPR---RIFPSMEAMKNV 133 (333)
Q Consensus 72 ~----~~~l~~L~~L~L~~n~l~~~~~~~-----------~~~~~l~~L~~L~ls~n~l~~~~~~---~~~~~l~~L~~l 133 (333)
. +..+..|++|.|.+|.+...-... -....-+.|+++...+|++...-.. ..++..+.|+.+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev 190 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV 190 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence 4 346789999999999874221111 1124567899999999988732211 124444455555
Q ss_pred cccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCcc----chhhhhCCCCCCEEEccCCcCCCCCcc
Q 039161 134 DEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNSLTGNIPV 209 (333)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 209 (333)
.+..|....... .....-...++.|+.||+.+|.++.. +...++.+++|+.|++++|.+......
T Consensus 191 r~~qN~I~~eG~-----------~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 191 RLSQNGIRPEGV-----------TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred EEecccccCchh-----------HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 554443221110 00111233478889999999988732 345677788899999999988755444
Q ss_pred cc-----ccCCCCcEEeCCCCcCCCC----CCCCccccCccceeecccCcc
Q 039161 210 SF-----ENMTALESLDLSFNKLDGR----IPEQLLSVTALALLNLSYNRL 251 (333)
Q Consensus 210 ~~-----~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~N~l 251 (333)
+| ...++|+.|++.+|.|+.. +...+...+.|..|+|++|.+
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 33 2467889999999988752 222344567888889999888
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=1.6e-11 Score=95.52 Aligned_cols=84 Identities=27% Similarity=0.356 Sum_probs=20.7
Q ss_pred CCCCccEEECCCCcCcCCCChhhc-CCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcc
Q 039161 27 NASHLRSLDLYSNKLEGPLPRSLA-KYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQAL 105 (333)
Q Consensus 27 ~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 105 (333)
+...+++|+|++|.|+. +. .+. .+.+|+.|+|++|.|+.. . .+..+++|++|++++|+++...+.. ...+++|
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~l--~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEGL--DKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHH--HHH-TT-
T ss_pred ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccch--HHhCCcC
Confidence 44456777777777763 22 243 456777777777777642 2 3556677777777777776553211 0235666
Q ss_pred cEEEcCCCccc
Q 039161 106 RIIDLSHTEFT 116 (333)
Q Consensus 106 ~~L~ls~n~l~ 116 (333)
+.|++++|++.
T Consensus 91 ~~L~L~~N~I~ 101 (175)
T PF14580_consen 91 QELYLSNNKIS 101 (175)
T ss_dssp -EEE-TTS---
T ss_pred CEEECcCCcCC
Confidence 66666666665
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=7.3e-12 Score=104.22 Aligned_cols=230 Identities=17% Similarity=0.170 Sum_probs=143.4
Q ss_pred hhhhCCCCccEEECCCCcCcC----CCChhhcCCCCCcEEEccCCcC---CCcccc-------cccCCCCCCEEEcccCc
Q 039161 23 NTFANASHLRSLDLYSNKLEG----PLPRSLAKYIKLEVVNVENNMI---SDSFPC-------WMGSLSELKILVLRSNQ 88 (333)
Q Consensus 23 ~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l---~~~~~~-------~~~~l~~L~~L~L~~n~ 88 (333)
.....+..+++++|++|.+.. .+...+.+.+.|+..++++--. ...+|. ++..+++|+.|+||+|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 345568899999999999863 3444566778999999986322 123333 34567899999999998
Q ss_pred CCCCCCCCC--CcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCce-EEeecCcchhhhhh
Q 039161 89 FDCPPCNSN--ITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESI-TVAMKGHDFQLQNI 165 (333)
Q Consensus 89 l~~~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 165 (333)
+....+..+ .......|++|.|.+|.+...-...+...+..+...........+....+.... .-..........+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 753332221 224578999999999988733222222222222211111111111111111000 00011122233455
Q ss_pred hhccceEEccCcccCc----cchhhhhCCCCCCEEEccCCcCCCC----CccccccCCCCcEEeCCCCcCCCCCCCCc--
Q 039161 166 FVMFRAMDFSSNRFHG----EISEVLGNFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDLSFNKLDGRIPEQL-- 235 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-- 235 (333)
.+.|+.+.+..|.+.. .+...+..+++|+.|||++|-++.. +...+..+++|+.|++++|.+.......+
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 6889999999998752 2345678899999999999998743 33456677889999999999886544433
Q ss_pred ---cccCccceeecccCcce
Q 039161 236 ---LSVTALALLNLSYNRLW 252 (333)
Q Consensus 236 ---~~l~~L~~L~l~~N~l~ 252 (333)
...++|+.+.+.+|.++
T Consensus 264 al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHhccCCCCceeccCcchhH
Confidence 23678999999999986
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.12 E-value=5.6e-11 Score=76.23 Aligned_cols=61 Identities=33% Similarity=0.450 Sum_probs=50.7
Q ss_pred CCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcC
Q 039161 29 SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQF 89 (333)
Q Consensus 29 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 89 (333)
++|++|++++|+++...+.+|.++++|++|++++|.++...+.+|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688888888888876667888888888888888888877777888888888888888864
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=2e-11 Score=99.91 Aligned_cols=130 Identities=22% Similarity=0.217 Sum_probs=94.3
Q ss_pred CCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEee
Q 039161 76 LSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAM 155 (333)
Q Consensus 76 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 155 (333)
...|+++||++|.++.+.... .-.|.++.|++|.|.++.. ++ |
T Consensus 283 Wq~LtelDLS~N~I~~iDESv---KL~Pkir~L~lS~N~i~~v------~n---L------------------------- 325 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESV---KLAPKLRRLILSQNRIRTV------QN---L------------------------- 325 (490)
T ss_pred Hhhhhhccccccchhhhhhhh---hhccceeEEeccccceeee------hh---h-------------------------
Confidence 456888888888877665433 3467888888888877621 11 1
Q ss_pred cCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCC-CCC
Q 039161 156 KGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI-PEQ 234 (333)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~ 234 (333)
..+++|+.||+|+|.++ .+..+-.++-+++.|.|+.|.+... ..++++-+|..||+++|+|.... -..
T Consensus 326 --------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~ 394 (490)
T KOG1259|consen 326 --------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNH 394 (490)
T ss_pred --------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcc
Confidence 11678888999999887 5555556777888999999888633 45667778888999999887432 235
Q ss_pred ccccCccceeecccCccee
Q 039161 235 LLSVTALALLNLSYNRLWG 253 (333)
Q Consensus 235 ~~~l~~L~~L~l~~N~l~~ 253 (333)
+++++.|+.+.+.+|++.+
T Consensus 395 IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cccccHHHHHhhcCCCccc
Confidence 7888889999999999873
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.01 E-value=3.6e-11 Score=108.30 Aligned_cols=216 Identities=25% Similarity=0.309 Sum_probs=116.5
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
.++.+.+..|.+.. .-..+..+.+|+.|++.+|+|.+ +...+..+++|++|++++|.|+... .+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence 34555566666653 22335566777777777777773 3333566777777777777777543 24555667777777
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|.+...... ..+++|+.+++++|.+...-+.. ...+..++.+.+.++..... .....
T Consensus 149 ~N~i~~~~~~----~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-----------------~~~~~ 206 (414)
T KOG0531|consen 149 GNLISDISGL----ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI-----------------EGLDL 206 (414)
T ss_pred cCcchhccCC----ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-----------------cchHH
Confidence 7777765532 33677777777777776332211 13334444444433321100 00011
Q ss_pred hhccceEEccCcccCccchhhhhCCC--CCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccce
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFK--SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL 243 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 243 (333)
...+..+++..|.++..-+ +..+. +|+.+++++|.+. ..+..+..+..+..|++.+|.+...- .+.....+..
T Consensus 207 ~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~ 281 (414)
T KOG0531|consen 207 LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSE 281 (414)
T ss_pred HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHH
Confidence 2233334566666552211 11222 2677777777776 33345555666777777777665321 1233344555
Q ss_pred eecccCcce
Q 039161 244 LNLSYNRLW 252 (333)
Q Consensus 244 L~l~~N~l~ 252 (333)
+....|.+.
T Consensus 282 ~~~~~~~~~ 290 (414)
T KOG0531|consen 282 LWLNDNKLA 290 (414)
T ss_pred hccCcchhc
Confidence 555555553
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=7.7e-11 Score=96.52 Aligned_cols=104 Identities=25% Similarity=0.374 Sum_probs=66.7
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
.|+++||++|.|+ .+.++..-.+.++.|++|+|.++. +. .+..+++|+.|||++|.++ ....+-..+-++++|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 3667777777776 444555556777777777777762 22 2666777777777777766 344555566677777777
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccc
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTG 117 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~ 117 (333)
.|.+...... .++-+|..||+++|++..
T Consensus 361 ~N~iE~LSGL----~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 361 QNKIETLSGL----RKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred hhhHhhhhhh----Hhhhhheeccccccchhh
Confidence 7766544311 456677777777777663
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.92 E-value=2.7e-10 Score=102.62 Aligned_cols=221 Identities=26% Similarity=0.259 Sum_probs=154.0
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+++.|++.+|.|..+. ..+..+++|++|++++|.|+...+ +..++.|+.|++++|.|+.. ..+..+++|+.++++
T Consensus 96 ~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS 170 (414)
T ss_pred ceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence 7999999999998543 337789999999999999985433 66778899999999999843 356668999999999
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|++........ ..+.+++.+++.+|.+...-. ...+..+..+.+..+... ...+.. .
T Consensus 171 ~n~i~~ie~~~~--~~~~~l~~l~l~~n~i~~i~~---~~~~~~l~~~~l~~n~i~------------~~~~l~-----~ 228 (414)
T KOG0531|consen 171 YNRIVDIENDEL--SELISLEELDLGGNSIREIEG---LDLLKKLVLLSLLDNKIS------------KLEGLN-----E 228 (414)
T ss_pred cchhhhhhhhhh--hhccchHHHhccCCchhcccc---hHHHHHHHHhhcccccce------------eccCcc-----c
Confidence 999987775201 567899999999998874322 222233333333222100 000000 0
Q ss_pred hh--ccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCC---CCC-CccccC
Q 039161 166 FV--MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR---IPE-QLLSVT 239 (333)
Q Consensus 166 ~~--~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~-~~~~l~ 239 (333)
.. .|+.+++++|++. ..+..+..+..+..+++..|++... ..+.....+..+..+.|.+... ... .....+
T Consensus 229 ~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (414)
T KOG0531|consen 229 LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAP 305 (414)
T ss_pred chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccc
Confidence 12 3889999999988 4445567788999999999998843 2344556677778888877632 111 145567
Q ss_pred ccceeecccCcceecCC
Q 039161 240 ALALLNLSYNRLWGRIP 256 (333)
Q Consensus 240 ~L~~L~l~~N~l~~~~p 256 (333)
.++.+.+.+|.+....+
T Consensus 306 ~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 306 TLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccccCccccccc
Confidence 78889999998875444
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.8e-10 Score=93.11 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=28.9
Q ss_pred hhccceEEccCc-ccCccchhhhhCCCCCCEEEccCCcCCCCCccc---cccCCCCcEEeCCC
Q 039161 166 FVMFRAMDFSSN-RFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVS---FENMTALESLDLSF 224 (333)
Q Consensus 166 ~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~ 224 (333)
+++|.+|||++| .++.....+|-+++.|++|.++.|.. ++|+. +...++|.+||.-+
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 566666666654 33333333445566666666665543 23332 34445555555444
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=5.8e-09 Score=100.88 Aligned_cols=106 Identities=28% Similarity=0.338 Sum_probs=89.8
Q ss_pred cccEEECcCCc--cccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161 6 ELITLHLENNS--LEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV 83 (333)
Q Consensus 6 ~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 83 (333)
.|++|-+..|. +.....+.|..|+.|+.|||++|.--+.+|+.++++.+|++|+|++..+. .+|..+..+.+|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 68899998886 66566677888999999999998776789999999999999999999998 7899999999999999
Q ss_pred cccCcCCCCCCCCCCcccCCcccEEEcCCCc
Q 039161 84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTE 114 (333)
Q Consensus 84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 114 (333)
+..+.-....+... ..+++|++|.+..-.
T Consensus 625 l~~~~~l~~~~~i~--~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 625 LEVTGRLESIPGIL--LELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccccchh--hhcccccEEEeeccc
Confidence 99887655555444 668999999987654
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.1e-08 Score=83.87 Aligned_cols=210 Identities=18% Similarity=0.209 Sum_probs=115.5
Q ss_pred CCCCccEEECCCCcCcC--CCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCc
Q 039161 27 NASHLRSLDLYSNKLEG--PLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQA 104 (333)
Q Consensus 27 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 104 (333)
..++++.|||.+|.|+. .+...+.+++.|+.|+|+.|++...+...-....+|+.|.|.+..+.......+ ...+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~-l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS-LDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhh-hhcchh
Confidence 35667777777777762 233345567777777777777664332211345567777776665543322222 144666
Q ss_pred ccEEEcCCCcccccC-Ccccc-cChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCcc
Q 039161 105 LRIIDLSHTEFTGFL-PRRIF-PSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE 182 (333)
Q Consensus 105 L~~L~ls~n~l~~~~-~~~~~-~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 182 (333)
++.|.++.|++.... .+.+. ..-+.+..++...+....+. ........++++..+-+..|.+...
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~-------------~~~~l~r~Fpnv~sv~v~e~PlK~~ 214 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL-------------NKNKLSRIFPNVNSVFVCEGPLKTE 214 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH-------------HHHhHHhhcccchheeeecCcccch
Confidence 667777766443211 11111 11123333333332211110 0112234467788888888866532
Q ss_pred c-hhhhhCCCCCCEEEccCCcCCCCC-ccccccCCCCcEEeCCCCcCCCCCCC------CccccCccceeecccCcce
Q 039161 183 I-SEVLGNFKSLKVLNLSHNSLTGNI-PVSFENMTALESLDLSFNKLDGRIPE------QLLSVTALALLNLSYNRLW 252 (333)
Q Consensus 183 ~-~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~l~~N~l~ 252 (333)
- .+.+..++.+-.|+|+.|++.... -+.+.+++.|..|.+++|.+.+.... .++.+++++.|+=+ +++
T Consensus 215 s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIs 290 (418)
T KOG2982|consen 215 SSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KIS 290 (418)
T ss_pred hhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccc
Confidence 2 233455677778889988887532 34677888899999999988754322 24566777776543 553
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.63 E-value=3.3e-09 Score=96.72 Aligned_cols=110 Identities=26% Similarity=0.314 Sum_probs=77.5
Q ss_pred hhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccc
Q 039161 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242 (333)
Q Consensus 163 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 242 (333)
.+.++.++.|+|++|+++.. . .+..+++|++|||++|.+.....-.-.++ +|..|.+++|.++.. ..+.++++|+
T Consensus 183 Lqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~ 257 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLY 257 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHHhhhhhh
Confidence 34478889999999998843 3 67788999999999999984332233343 388999999988742 2467888999
Q ss_pred eeecccCcceecCCCCCccCCccccccccccCCCCCCCC
Q 039161 243 LLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT 281 (333)
Q Consensus 243 ~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~ 281 (333)
.||+++|-|.+. -++..+..+.......|.|||+-
T Consensus 258 ~LDlsyNll~~h----seL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 258 GLDLSYNLLSEH----SELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccchhHhhhhcc----hhhhHHHHHHHHHHHhhcCCccc
Confidence 999999998732 23334444455556677777764
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.59 E-value=1.3e-09 Score=79.14 Aligned_cols=111 Identities=25% Similarity=0.355 Sum_probs=69.2
Q ss_pred hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeec
Q 039161 167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 246 (333)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 246 (333)
..|...++++|.+....+.....++-++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..||.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 44566777777777444443345557777777777777 56666777777777777777777 55665666777777777
Q ss_pred ccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161 247 SYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 247 ~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~ 285 (333)
.+|.+. .+|.+....+ ..+-+.+..+||...|.
T Consensus 131 ~~na~~-eid~dl~~s~-----~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 131 PENARA-EIDVDLFYSS-----LPALIKLGNEPLGDETK 163 (177)
T ss_pred CCCccc-cCcHHHhccc-----cHHHHHhcCCcccccCc
Confidence 777765 5555422222 22333444456665554
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.47 E-value=2.4e-07 Score=89.89 Aligned_cols=84 Identities=29% Similarity=0.358 Sum_probs=74.8
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
+| .|++|||++|.=-+.+|..++++-+|++|++++..+. .+|..+.++..|.+|++..+.-...+|.....+++|++|
T Consensus 570 m~-~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 570 LP-LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred Cc-ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 56 8999999998777799999999999999999999999 899999999999999999887655567777779999999
Q ss_pred EcccCc
Q 039161 83 VLRSNQ 88 (333)
Q Consensus 83 ~L~~n~ 88 (333)
.+....
T Consensus 648 ~l~~s~ 653 (889)
T KOG4658|consen 648 RLPRSA 653 (889)
T ss_pred Eeeccc
Confidence 997754
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=9.2e-09 Score=93.86 Aligned_cols=124 Identities=22% Similarity=0.208 Sum_probs=88.5
Q ss_pred ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccc-cccCCCCCCEEEcc
Q 039161 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPC-WMGSLSELKILVLR 85 (333)
Q Consensus 7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~ 85 (333)
|.+.+.++|.+. .+..++.-++.|+.|+|++|+++.. +.+..+++|++|||+.|.+. .+|. ....+ +|+.|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 556667777776 5566677788888888888888743 36788888888888888887 3443 22233 48888888
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcc
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRL 139 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~ 139 (333)
+|.++..... ..+.+|+.||++.|-+.+...-.....+..|+.|.+.+|.
T Consensus 241 nN~l~tL~gi----e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NNALTTLRGI----ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccHHHhhhhH----HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8877655422 4677888888888877766555556677777777777764
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.4e-09 Score=87.75 Aligned_cols=179 Identities=22% Similarity=0.238 Sum_probs=97.5
Q ss_pred CCcEEEccCCcCCCc-ccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCC-cccccCCcccccChHHhh
Q 039161 54 KLEVVNVENNMISDS-FPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHT-EFTGFLPRRIFPSMEAMK 131 (333)
Q Consensus 54 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~L~ 131 (333)
.|+++||++..|+.. .-..+..+.+|+.|.+.++++........ ..-.+|+.++++.+ .++......++.+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i--AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI--AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH--hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 355666665555421 11233445556666666665554443333 34455666666553 344333333445555555
Q ss_pred hhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcc--cC-ccchhhhhCCCCCCEEEccCCc-CCCCC
Q 039161 132 NVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR--FH-GEISEVLGNFKSLKVLNLSHNS-LTGNI 207 (333)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~--l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 207 (333)
+|+++-+... ...-.......-+.|..|++++.. +. ..+..-...+++|..|||++|. ++...
T Consensus 264 ~LNlsWc~l~-------------~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 264 ELNLSWCFLF-------------TEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred hcCchHhhcc-------------chhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence 5544322100 000111122334667777777653 11 1222334578999999999985 44333
Q ss_pred ccccccCCCCcEEeCCCCcCCCCCCCC---ccccCccceeecccC
Q 039161 208 PVSFENMTALESLDLSFNKLDGRIPEQ---LLSVTALALLNLSYN 249 (333)
Q Consensus 208 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~l~~N 249 (333)
...|.+++.|++|.++.|.. ++|.. +...++|.+||+-++
T Consensus 331 ~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 331 FQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 45567889999999999874 44554 456677888887554
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.41 E-value=2.2e-08 Score=72.76 Aligned_cols=61 Identities=28% Similarity=0.357 Sum_probs=27.6
Q ss_pred CCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcce
Q 039161 191 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 252 (333)
Q Consensus 191 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 252 (333)
..|+..+|++|.+....+..-...+.++.|+|++|.|+ .+|..+..++.|+.++++.|++.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 34444455555554222222223334455555555554 34444555555555555555543
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.40 E-value=1.8e-07 Score=76.05 Aligned_cols=111 Identities=20% Similarity=0.244 Sum_probs=77.9
Q ss_pred cccEEECcCCccccccchh----hhCCCCccEEECCCCc---CcCCCCh-------hhcCCCCCcEEEccCCcCCCcccc
Q 039161 6 ELITLHLENNSLEGHIHNT----FANASHLRSLDLYSNK---LEGPLPR-------SLAKYIKLEVVNVENNMISDSFPC 71 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~---l~~~~p~-------~~~~l~~L~~L~L~~n~l~~~~~~ 71 (333)
.++.++||+|.|......+ +++-.+|+..+++.-- ....+++ ++-+|++|+.++||+|.+....|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 5789999999997555444 4566788888887532 1122333 456889999999999999876665
Q ss_pred c----ccCCCCCCEEEcccCcCCCCCCCCC-----------CcccCCcccEEEcCCCccc
Q 039161 72 W----MGSLSELKILVLRSNQFDCPPCNSN-----------ITFPFQALRIIDLSHTEFT 116 (333)
Q Consensus 72 ~----~~~l~~L~~L~L~~n~l~~~~~~~~-----------~~~~l~~L~~L~ls~n~l~ 116 (333)
. ++.-..|++|.+++|.+--.-...+ ....-|.|+.+....|++.
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 3 4566889999999997642221111 1134678999999999887
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=8e-08 Score=78.97 Aligned_cols=213 Identities=15% Similarity=0.144 Sum_probs=137.3
Q ss_pred CCCccEEECCCCcCcCCC-Chhh-cCCCCCcEEEccCCcCCCc--ccccccCCCCCCEEEcccCcCCCCCCCCCCcccCC
Q 039161 28 ASHLRSLDLYSNKLEGPL-PRSL-AKYIKLEVVNVENNMISDS--FPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQ 103 (333)
Q Consensus 28 l~~L~~L~Ls~n~l~~~~-p~~~-~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 103 (333)
...++.|.+-++.|..+- ...| ..++.++++||.+|.|++. +...+.++|.|++|+++.|.+...+...- .+..
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~ 121 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLK 121 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--cccc
Confidence 344456666666664221 1122 3467899999999999852 34456789999999999999876554332 4677
Q ss_pred cccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-c-ccccccCceEEeecCcchhhhhhhhccceEEccCcccCc
Q 039161 104 ALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-M-GRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG 181 (333)
Q Consensus 104 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 181 (333)
+|+.|-+.+..+...-..+....++.++.++++.|... + -...+.+ ...+.+.+|++..|....
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e--------------~~s~~v~tlh~~~c~~~~ 187 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE--------------DWSTEVLTLHQLPCLEQL 187 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccc--------------ccchhhhhhhcCCcHHHH
Confidence 89999999887765444555677777888877765211 0 0001111 013455666666654320
Q ss_pred --cchhhhhCCCCCCEEEccCCcCCCCC-ccccccCCCCcEEeCCCCcCCCC-CCCCccccCccceeecccCcceecCC
Q 039161 182 --EISEVLGNFKSLKVLNLSHNSLTGNI-PVSFENMTALESLDLSFNKLDGR-IPEQLLSVTALALLNLSYNRLWGRIP 256 (333)
Q Consensus 182 --~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~p 256 (333)
.....-..++++..+-+..|.+...- -..+..++.+.-|+|+.|+|... .-+.+..++.|.-|.+++|++...+.
T Consensus 188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred HHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 11122234678888888888776432 23456678888999999998752 23457788889999999999875443
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.28 E-value=1.8e-07 Score=76.05 Aligned_cols=233 Identities=18% Similarity=0.108 Sum_probs=129.5
Q ss_pred hhCCCCccEEECCCCcCcCCCCh----hhcCCCCCcEEEccCCcCC---Cccc-------ccccCCCCCCEEEcccCcCC
Q 039161 25 FANASHLRSLDLYSNKLEGPLPR----SLAKYIKLEVVNVENNMIS---DSFP-------CWMGSLSELKILVLRSNQFD 90 (333)
Q Consensus 25 ~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~---~~~~-------~~~~~l~~L~~L~L~~n~l~ 90 (333)
+.-+..++.++||+|-|...-.. .+.+-.+|+..++++-... ..++ .++-.||+|+.++|+.|-+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34588999999999999744333 3445578999988864322 1222 34568999999999999886
Q ss_pred CCCCCCC--CcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEe-ecCcchhhhhhhh
Q 039161 91 CPPCNSN--ITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVA-MKGHDFQLQNIFV 167 (333)
Q Consensus 91 ~~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 167 (333)
...+... .....+.|.+|.+++|.+.......+...+..|.+.--..+...+....+....... .........+...
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 5443221 124567899999999988743333332222222211111111111111110000000 0011111222235
Q ss_pred ccceEEccCcccCccc-----hhhhhCCCCCCEEEccCCcCCCCC----ccccccCCCCcEEeCCCCcCCCCCCCCc---
Q 039161 168 MFRAMDFSSNRFHGEI-----SEVLGNFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFNKLDGRIPEQL--- 235 (333)
Q Consensus 168 ~L~~L~ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--- 235 (333)
.|+++.+..|.|.-.- -..+..+++|+.|||++|-++-.. ..++...+.|+.|.+.+|-++......+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 7788888888775221 112345678888888888876322 2233344567888888887765433221
Q ss_pred ---cccCccceeecccCcceecCCC
Q 039161 236 ---LSVTALALLNLSYNRLWGRIPR 257 (333)
Q Consensus 236 ---~~l~~L~~L~l~~N~l~~~~p~ 257 (333)
...++|..|-..+|.+.+.+-.
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~ 290 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIIL 290 (388)
T ss_pred hhhhcCCCccccccchhhhcCceee
Confidence 1245677777778877653333
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=1.1e-06 Score=51.65 Aligned_cols=35 Identities=43% Similarity=0.621 Sum_probs=13.2
Q ss_pred ccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCC
Q 039161 31 LRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMIS 66 (333)
Q Consensus 31 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 66 (333)
|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 344444444444 22323344444444444444433
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.17 E-value=1.4e-05 Score=70.33 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=46.9
Q ss_pred hCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccC-cCCCCCCCCCCcccCCc
Q 039161 26 ANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSN-QFDCPPCNSNITFPFQA 104 (333)
Q Consensus 26 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~ 104 (333)
..+.+++.|++++|.++ .+|. + ..+|++|.++++.--...|..+. ++|+.|++++| .+... ..+
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sL---------P~s 113 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGL---------PES 113 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccc---------ccc
Confidence 34678888888888777 4452 2 23688888877543335555442 57888888877 44322 235
Q ss_pred ccEEEcCCCcc
Q 039161 105 LRIIDLSHTEF 115 (333)
Q Consensus 105 L~~L~ls~n~l 115 (333)
|+.|+++.+..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 77777766543
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=2.7e-06 Score=49.98 Aligned_cols=36 Identities=31% Similarity=0.572 Sum_probs=17.5
Q ss_pred ccceEEccCcccCccchhhhhCCCCCCEEEccCCcCC
Q 039161 168 MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLT 204 (333)
Q Consensus 168 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 204 (333)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 33334555555555555555554
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.14 E-value=3.9e-06 Score=65.38 Aligned_cols=104 Identities=19% Similarity=0.232 Sum_probs=53.8
Q ss_pred ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcc-cccccCCCCCCEEEcc
Q 039161 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF-PCWMGSLSELKILVLR 85 (333)
Q Consensus 7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~ 85 (333)
...+||++|.+... ..|.+++.|.+|.+.+|.|+.+-|.--..+++|..|.|.+|.|.... -.-+..+++|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 44556666655422 23555666666666666666554544444555666666666654211 0123445666666666
Q ss_pred cCcCCCCCC-CCCCcccCCcccEEEcCC
Q 039161 86 SNQFDCPPC-NSNITFPFQALRIIDLSH 112 (333)
Q Consensus 86 ~n~l~~~~~-~~~~~~~l~~L~~L~ls~ 112 (333)
+|..+...- ..+....+|+|+.||++.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 665543221 112234556666666554
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=3.8e-06 Score=65.45 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=41.6
Q ss_pred CccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEE
Q 039161 30 HLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIID 109 (333)
Q Consensus 30 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 109 (333)
+...+||++|.+. .+ ..|..++.|..|.|.+|+|+..-|..-..+++|+.|.|.+|++.....-. ....+|.|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceee
Confidence 4455566665554 12 23455555666666666665444443334455666666665554332211 113345555555
Q ss_pred cCCCccc
Q 039161 110 LSHTEFT 116 (333)
Q Consensus 110 ls~n~l~ 116 (333)
+-+|.++
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 5555544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=2.6e-05 Score=68.55 Aligned_cols=88 Identities=17% Similarity=0.198 Sum_probs=59.0
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCC-cCCCcccccccCCCCCCEEEc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN-MISDSFPCWMGSLSELKILVL 84 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 84 (333)
+++.|++++|.++.. |. + -++|++|+++++.--..+|+.+. .+|+.|++++| .+. .+| .+|+.|++
T Consensus 53 ~l~~L~Is~c~L~sL-P~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sLe~L~L 119 (426)
T PRK15386 53 ASGRLYIKDCDIESL-PV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESVRSLEI 119 (426)
T ss_pred CCCEEEeCCCCCccc-CC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------cccceEEe
Confidence 789999999988844 52 2 24699999998543346776553 58999999998 554 344 35788888
Q ss_pred ccCcCCCCCCCCCCcccCCcccEEEcCC
Q 039161 85 RSNQFDCPPCNSNITFPFQALRIIDLSH 112 (333)
Q Consensus 85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 112 (333)
..+...... .-.++|+.|.+.+
T Consensus 120 ~~n~~~~L~------~LPssLk~L~I~~ 141 (426)
T PRK15386 120 KGSATDSIK------NVPNGLTSLSINS 141 (426)
T ss_pred CCCCCcccc------cCcchHhheeccc
Confidence 766544321 1124677777654
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.72 E-value=0.0001 Score=54.87 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=21.7
Q ss_pred hhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 24 TFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 24 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+|.++.+|+.+.+.. .+......+|..+.+|+.+.+..+ +.......|..+++++.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344444555555442 233333344444444555554443 332333344444445555553
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.72 E-value=0.00014 Score=54.19 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=27.9
Q ss_pred hhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCC
Q 039161 47 RSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSH 112 (333)
Q Consensus 47 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 112 (333)
.+|.++.+|+.+.+.. .+.......|..+++|+.+.+..+ +.......+ ...++++.+.+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F--~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF--SNCKSLESITFPN 67 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT--TT-TT-EEEEETS
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee--ecccccccccccc
Confidence 3455666666666653 344444455666666666666553 444444444 4455566666643
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=2.5e-05 Score=74.19 Aligned_cols=117 Identities=16% Similarity=0.233 Sum_probs=72.2
Q ss_pred CcCcccEEECcCCccc-cccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCC-cccccccCCCCCC
Q 039161 3 FSTELITLHLENNSLE-GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISD-SFPCWMGSLSELK 80 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 80 (333)
|| +|+.|.+++-.+. +.....+.++++|+.||+|+.+++.. ..++++++|+.|.+.+=.+.. .--..+..+++|+
T Consensus 147 LP-sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LP-SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred Cc-ccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 45 7777777776653 23334456777888888888777633 456777777777776554442 1112456788888
Q ss_pred EEEcccCcCCCCCC--CCC--CcccCCcccEEEcCCCcccccCCcc
Q 039161 81 ILVLRSNQFDCPPC--NSN--ITFPFQALRIIDLSHTEFTGFLPRR 122 (333)
Q Consensus 81 ~L~L~~n~l~~~~~--~~~--~~~~l~~L~~L~ls~n~l~~~~~~~ 122 (333)
.||+|..+...... ..+ ....+|.|+.||.|++.+...+-..
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 88888765543320 000 1134788888888887776544433
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=3.2e-05 Score=73.50 Aligned_cols=108 Identities=19% Similarity=0.313 Sum_probs=72.9
Q ss_pred cccEEECcCCcc-ccccchhhh-CCCCccEEECCCCcCcCC-CChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 6 ELITLHLENNSL-EGHIHNTFA-NASHLRSLDLYSNKLEGP-LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 6 ~L~~L~L~~n~l-~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
+|+.|++++... ....+..++ -+|.|+.|.+++-.+... .-....++++|+.||+|+.+++.. ..++.+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 578888888653 333334443 478999999998777522 223345688899999999888743 567788888888
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCccc
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT 116 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 116 (333)
.+.+=.+..... ......+++|+.||+|.....
T Consensus 201 ~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 201 SMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred hccCCCCCchhh-HHHHhcccCCCeeeccccccc
Confidence 887765543211 011256889999999886544
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.39 E-value=9.7e-05 Score=60.11 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=57.5
Q ss_pred cchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCC--cCCCcccccccCCCCCCEEEcccCcCCCCCCCCCC
Q 039161 21 IHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENN--MISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNI 98 (333)
Q Consensus 21 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 98 (333)
+......+..|+.|.+.+..++. -..|..+++|+.|.++.| ++.+..+.....+++|++++++.|++....... .
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-P 111 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-h
Confidence 33334455667777777776662 224566778888888888 555444444555688888888888776422111 1
Q ss_pred cccCCcccEEEcCCCccc
Q 039161 99 TFPFQALRIIDLSHTEFT 116 (333)
Q Consensus 99 ~~~l~~L~~L~ls~n~l~ 116 (333)
...+++|..|++.+|..+
T Consensus 112 l~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhcchhhhhcccCCcc
Confidence 244666777777777655
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.25 E-value=7.7e-05 Score=60.68 Aligned_cols=101 Identities=25% Similarity=0.272 Sum_probs=68.4
Q ss_pred ccEEECcCCccccccchhhhCCCCccEEECCCC--cCcCCCChhhcCCCCCcEEEccCCcCCCccccc---ccCCCCCCE
Q 039161 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSN--KLEGPLPRSLAKYIKLEVVNVENNMISDSFPCW---MGSLSELKI 81 (333)
Q Consensus 7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~ 81 (333)
++.|++.+..++.. ..|..+++|++|.++.| .+.+.++-....+++|++|+|++|+|.. ++. ...+.+|..
T Consensus 45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKS 120 (260)
T ss_pred hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhh
Confidence 55566666555422 34667899999999999 6666666666778999999999999873 333 345678889
Q ss_pred EEcccCcCCCCCCC-CCCcccCCcccEEEcC
Q 039161 82 LVLRSNQFDCPPCN-SNITFPFQALRIIDLS 111 (333)
Q Consensus 82 L~L~~n~l~~~~~~-~~~~~~l~~L~~L~ls 111 (333)
|++.+|..+..... ...+.-+++|.+|+-.
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 99999876653211 1122345666665543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=1.9e-05 Score=64.67 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=61.5
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcc-cccccCCCCCCEEEc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF-PCWMGSLSELKILVL 84 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 84 (333)
+++.|+..++.++++ .....|+.|+.|.||-|+|+.. ..|..|++|++|+|..|.|...- -..+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 456677777777654 2345677788888888777743 23677777888888777776321 123456777777777
Q ss_pred ccCcCCCCCCCCC---CcccCCcccEEE
Q 039161 85 RSNQFDCPPCNSN---ITFPFQALRIID 109 (333)
Q Consensus 85 ~~n~l~~~~~~~~---~~~~l~~L~~L~ 109 (333)
..|.-.+..+... ....+|+|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 7776554433221 123456666654
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=1.9e-05 Score=64.71 Aligned_cols=103 Identities=20% Similarity=0.216 Sum_probs=78.6
Q ss_pred CCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCccc
Q 039161 27 NASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALR 106 (333)
Q Consensus 27 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 106 (333)
.+.+.++|++-++.++.+ ....+++.|++|.|+-|+|+..- .+..|++|++|+|..|.+....... ....+++|+
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~-YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELE-YLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHH-HHhcCchhh
Confidence 467788999999999843 23568999999999999998544 4788999999999999987655433 336799999
Q ss_pred EEEcCCCcccccCCcc----cccChHHhhhhc
Q 039161 107 IIDLSHTEFTGFLPRR----IFPSMEAMKNVD 134 (333)
Q Consensus 107 ~L~ls~n~l~~~~~~~----~~~~l~~L~~l~ 134 (333)
.|.+..|.-.+..+.. ++..+++|+.|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999999877665543 244555565554
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.52 E-value=0.001 Score=32.48 Aligned_cols=11 Identities=45% Similarity=0.552 Sum_probs=4.3
Q ss_pred cEEECCCCcCc
Q 039161 32 RSLDLYSNKLE 42 (333)
Q Consensus 32 ~~L~Ls~n~l~ 42 (333)
++||+++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33344444333
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.04 E-value=0.0036 Score=30.47 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=17.1
Q ss_pred cccEEECcCCccccccchhhhC
Q 039161 6 ELITLHLENNSLEGHIHNTFAN 27 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~ 27 (333)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 5899999999999 66665765
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.99 E-value=0.00086 Score=61.88 Aligned_cols=109 Identities=22% Similarity=0.154 Sum_probs=64.3
Q ss_pred cccEEECcCCc-cccc-cchhhhCCCCccEEECCCC-cCcCCCC----hhhcCCCCCcEEEccCCc-CCCccccccc-CC
Q 039161 6 ELITLHLENNS-LEGH-IHNTFANASHLRSLDLYSN-KLEGPLP----RSLAKYIKLEVVNVENNM-ISDSFPCWMG-SL 76 (333)
Q Consensus 6 ~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~p----~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l 76 (333)
.++.+.+..+. ++.. .-.....+++|++|+++++ ......+ .....+.+|+.|+++.+. +++..-..+. .+
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 66777776663 3321 2344556888888888873 2211111 233456788888888887 5544333333 37
Q ss_pred CCCCEEEcccCc-CCCCCCCCCCcccCCcccEEEcCCCcc
Q 039161 77 SELKILVLRSNQ-FDCPPCNSNITFPFQALRIIDLSHTEF 115 (333)
Q Consensus 77 ~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~ls~n~l 115 (333)
++|+.|.+.++. ++...-.. ....+++|++|+++.+..
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCcc
Confidence 788888877665 33222111 224567788888887654
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.68 E-value=0.00034 Score=60.76 Aligned_cols=86 Identities=24% Similarity=0.218 Sum_probs=39.2
Q ss_pred hhccceEEccCc-ccCccchhhh-hCCCCCCEEEccCCc-CCCCCcccc-ccCCCCcEEeCCCCcCCCC--CCCCccccC
Q 039161 166 FVMFRAMDFSSN-RFHGEISEVL-GNFKSLKVLNLSHNS-LTGNIPVSF-ENMTALESLDLSFNKLDGR--IPEQLLSVT 239 (333)
Q Consensus 166 ~~~L~~L~ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~ 239 (333)
+..|+.|+.+++ .+++..-.++ .+.++|+.+.++.++ ++..--..+ .+.+.|+.+++..+..... +...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 555666666654 3333332333 245666677666664 221111111 2345556666555533211 111223445
Q ss_pred ccceeecccCcc
Q 039161 240 ALALLNLSYNRL 251 (333)
Q Consensus 240 ~L~~L~l~~N~l 251 (333)
.|+.+.++++.+
T Consensus 373 ~lr~lslshce~ 384 (483)
T KOG4341|consen 373 RLRVLSLSHCEL 384 (483)
T ss_pred hhccCChhhhhh
Confidence 555555555543
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.67 E-value=7.4e-05 Score=68.00 Aligned_cols=110 Identities=22% Similarity=0.205 Sum_probs=63.0
Q ss_pred ccEEECcCCccccccc----hhhhCCCCccEEECCCCcCcCCCChh----hcCC-CCCcEEEccCCcCCCc----ccccc
Q 039161 7 LITLHLENNSLEGHIH----NTFANASHLRSLDLYSNKLEGPLPRS----LAKY-IKLEVVNVENNMISDS----FPCWM 73 (333)
Q Consensus 7 L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~p~~----~~~l-~~L~~L~L~~n~l~~~----~~~~~ 73 (333)
+..+.|.+|.+..... ..+...+.|..|++++|.+...--.. +... ..++.|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5667777777764333 34556778888888888876322211 2222 4566677777777643 23344
Q ss_pred cCCCCCCEEEcccCcCCCCC----CCCCC--cccCCcccEEEcCCCccc
Q 039161 74 GSLSELKILVLRSNQFDCPP----CNSNI--TFPFQALRIIDLSHTEFT 116 (333)
Q Consensus 74 ~~l~~L~~L~L~~n~l~~~~----~~~~~--~~~l~~L~~L~ls~n~l~ 116 (333)
.....++.++++.|.+.... +.... .....++++|++++|.++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 55677777777777764111 01110 023456667777776665
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.62 E-value=0.0001 Score=67.14 Aligned_cols=86 Identities=29% Similarity=0.297 Sum_probs=42.7
Q ss_pred hccceEEccCcccCcc----chhhhhCCCC-CCEEEccCCcCCCCC----ccccccC-CCCcEEeCCCCcCCCCCC----
Q 039161 167 VMFRAMDFSSNRFHGE----ISEVLGNFKS-LKVLNLSHNSLTGNI----PVSFENM-TALESLDLSFNKLDGRIP---- 232 (333)
Q Consensus 167 ~~L~~L~ls~n~l~~~----~~~~~~~l~~-L~~L~Ls~n~l~~~~----~~~~~~l-~~L~~L~Ls~n~l~~~~~---- 232 (333)
..+++|+++++.++.. +...+...+. +..+++..|.+.+.. ...+..+ ..+++++++.|.|+....
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 4455566666655421 1122333444 555666666665331 1222333 455666666666655322
Q ss_pred CCccccCccceeecccCcce
Q 039161 233 EQLLSVTALALLNLSYNRLW 252 (333)
Q Consensus 233 ~~~~~l~~L~~L~l~~N~l~ 252 (333)
..+..++.++.+.+++|.+.
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHhhhHHHHHhhcccCccc
Confidence 23344455666666666663
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.61 E-value=0.00066 Score=59.01 Aligned_cols=83 Identities=19% Similarity=0.136 Sum_probs=46.7
Q ss_pred CcCcccEEECcCCc-cccccchhh-hCCCCccEEECCCC-cCcCCCCh-hhcCCCCCcEEEccCCc-CCCcc-cccccCC
Q 039161 3 FSTELITLHLENNS-LEGHIHNTF-ANASHLRSLDLYSN-KLEGPLPR-SLAKYIKLEVVNVENNM-ISDSF-PCWMGSL 76 (333)
Q Consensus 3 l~~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~p~-~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l 76 (333)
+| +++.|.+.++. +++..-..+ ..++.|++|++..| .+|...-. -...+++|++++++++. +++.. ...+.++
T Consensus 163 Cp-nIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 163 CP-NIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred CC-chhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 45 77778777764 333322333 35778888888884 44433323 22467888888888875 33311 1123344
Q ss_pred CCCCEEEccc
Q 039161 77 SELKILVLRS 86 (333)
Q Consensus 77 ~~L~~L~L~~ 86 (333)
..++.+.+.+
T Consensus 242 ~~l~~~~~kG 251 (483)
T KOG4341|consen 242 KELEKLSLKG 251 (483)
T ss_pred hhhhhhhhcc
Confidence 4555555444
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.52 E-value=0.022 Score=25.66 Aligned_cols=10 Identities=60% Similarity=0.946 Sum_probs=3.0
Q ss_pred ccEEECCCCc
Q 039161 31 LRSLDLYSNK 40 (333)
Q Consensus 31 L~~L~Ls~n~ 40 (333)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.53 E-value=0.074 Score=26.87 Aligned_cols=13 Identities=54% Similarity=0.802 Sum_probs=6.3
Q ss_pred CccEEECCCCcCc
Q 039161 30 HLRSLDLYSNKLE 42 (333)
Q Consensus 30 ~L~~L~Ls~n~l~ 42 (333)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.53 E-value=0.074 Score=26.87 Aligned_cols=13 Identities=54% Similarity=0.802 Sum_probs=6.3
Q ss_pred CccEEECCCCcCc
Q 039161 30 HLRSLDLYSNKLE 42 (333)
Q Consensus 30 ~L~~L~Ls~n~l~ 42 (333)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.48 E-value=0.0017 Score=52.25 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=66.0
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
....+.||++.|++- .+-.-|+.++.++.|+++.|++. ..|..++....++++++..|..+ ..|..+...++++.++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 456677888888776 44455677778888888888888 67888888888888888888877 7788888888888888
Q ss_pred cccCcce
Q 039161 246 LSYNRLW 252 (333)
Q Consensus 246 l~~N~l~ 252 (333)
+..|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888764
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.71 E-value=0.1 Score=26.29 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=5.6
Q ss_pred CCCEEEccCCcCC
Q 039161 192 SLKVLNLSHNSLT 204 (333)
Q Consensus 192 ~L~~L~Ls~n~l~ 204 (333)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.71 E-value=0.1 Score=26.29 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=5.6
Q ss_pred CCCEEEccCCcCC
Q 039161 192 SLKVLNLSHNSLT 204 (333)
Q Consensus 192 ~L~~L~Ls~n~l~ 204 (333)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.37 E-value=0.017 Score=45.57 Aligned_cols=83 Identities=25% Similarity=0.200 Sum_probs=57.6
Q ss_pred hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCC-Cccccc-cCCCCcEEeCCCC-cCCCCCCCCccccCccce
Q 039161 167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGN-IPVSFE-NMTALESLDLSFN-KLDGRIPEQLLSVTALAL 243 (333)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 243 (333)
..++.+|-++..+..+--+-+..++.++.|.+.++.--+. --+-++ ..++|+.|++++| +|++..-..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3567888888888777677788888888888887753211 111111 3478999999977 777665566677788887
Q ss_pred eecccC
Q 039161 244 LNLSYN 249 (333)
Q Consensus 244 L~l~~N 249 (333)
|.+.+=
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 766653
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.73 E-value=0.0046 Score=49.82 Aligned_cols=95 Identities=20% Similarity=0.151 Sum_probs=69.2
Q ss_pred cccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCC
Q 039161 17 LEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNS 96 (333)
Q Consensus 17 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 96 (333)
+..+....+......+.||++.|++. .....|+-++.+..|+++.|.+. ..|..+..+..+..+++.+|..+..+..
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s- 106 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKS- 106 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCcc-
Confidence 34344455666778888888888876 44556777788888888888886 5677777777888888888877655433
Q ss_pred CCcccCCcccEEEcCCCccc
Q 039161 97 NITFPFQALRIIDLSHTEFT 116 (333)
Q Consensus 97 ~~~~~l~~L~~L~ls~n~l~ 116 (333)
+ ...+.++++++-.|.++
T Consensus 107 ~--~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 Q--KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred c--cccCCcchhhhccCcch
Confidence 3 67788888888887754
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.77 E-value=0.013 Score=46.13 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=53.7
Q ss_pred CCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCC-cccccCCcccccChHHh
Q 039161 52 YIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHT-EFTGFLPRRIFPSMEAM 130 (333)
Q Consensus 52 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~L 130 (333)
-..++.+|-++..|..+.-..+..+++++.|.+.++.--+...-.......++|+.|++++| +||.. .-.....+++|
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknL 178 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNL 178 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhh
Confidence 34678888888888877777788888888888888764333222222245789999999987 46522 22224444555
Q ss_pred hhhcc
Q 039161 131 KNVDE 135 (333)
Q Consensus 131 ~~l~~ 135 (333)
+.+.+
T Consensus 179 r~L~l 183 (221)
T KOG3864|consen 179 RRLHL 183 (221)
T ss_pred HHHHh
Confidence 55544
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.22 E-value=0.094 Score=25.90 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=6.7
Q ss_pred cccEEECcCCccccc
Q 039161 6 ELITLHLENNSLEGH 20 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~ 20 (333)
+|++|+|++|.|++.
T Consensus 3 ~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 3 NLETLDLSNNQITDE 17 (24)
T ss_dssp T-SEEE-TSSBEHHH
T ss_pred CCCEEEccCCcCCHH
Confidence 455555555555443
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.40 E-value=0.95 Score=22.91 Aligned_cols=14 Identities=43% Similarity=0.698 Sum_probs=7.0
Q ss_pred CCccEEECCCCcCc
Q 039161 29 SHLRSLDLYSNKLE 42 (333)
Q Consensus 29 ~~L~~L~Ls~n~l~ 42 (333)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.63 E-value=0.77 Score=23.19 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=7.0
Q ss_pred cccEEECcCCccc
Q 039161 6 ELITLHLENNSLE 18 (333)
Q Consensus 6 ~L~~L~L~~n~l~ 18 (333)
+|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555554
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.47 E-value=0.92 Score=41.78 Aligned_cols=85 Identities=21% Similarity=0.103 Sum_probs=57.3
Q ss_pred cccEEECcCC-cccccc----chhhhCCCCccEEECCCCc-CcCCCChhhc-CCCCCcEEEccCCc-CCCcccc-cccCC
Q 039161 6 ELITLHLENN-SLEGHI----HNTFANASHLRSLDLYSNK-LEGPLPRSLA-KYIKLEVVNVENNM-ISDSFPC-WMGSL 76 (333)
Q Consensus 6 ~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~-~l~~L~~L~L~~n~-l~~~~~~-~~~~l 76 (333)
+|+.|+++++ ...... ......+++|+.|+++++. ++...-..+. .+++|+.|.+..+. +++..-. ....+
T Consensus 215 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~ 294 (482)
T KOG1947|consen 215 NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERC 294 (482)
T ss_pred hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhc
Confidence 8999999873 221111 1234567899999999998 6644333443 38899999988777 5543322 33467
Q ss_pred CCCCEEEcccCcCC
Q 039161 77 SELKILVLRSNQFD 90 (333)
Q Consensus 77 ~~L~~L~L~~n~l~ 90 (333)
++|++|+++.+...
T Consensus 295 ~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 295 PSLRELDLSGCHGL 308 (482)
T ss_pred CcccEEeeecCccc
Confidence 88999999987543
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.04 E-value=1.6 Score=22.38 Aligned_cols=15 Identities=53% Similarity=0.640 Sum_probs=9.8
Q ss_pred CCCcEEeCCCCcCCC
Q 039161 215 TALESLDLSFNKLDG 229 (333)
Q Consensus 215 ~~L~~L~Ls~n~l~~ 229 (333)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 456777777777653
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=75.22 E-value=1.2 Score=48.77 Aligned_cols=42 Identities=19% Similarity=0.125 Sum_probs=34.2
Q ss_pred eCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccc
Q 039161 221 DLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQN 266 (333)
Q Consensus 221 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~ 266 (333)
||++|+|+...+..|..+++|+.|+|++|++. +++.+..|..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~----CDC~L~WL~~ 42 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE----CDCGLARLPR 42 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc----cccccHHHHH
Confidence 68999999777778899999999999999997 5555555443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.46 E-value=2.1 Score=39.46 Aligned_cols=59 Identities=32% Similarity=0.400 Sum_probs=26.5
Q ss_pred cccEEECcCCccccc--cchhhhCCCCccEEECCCC--cCcCCCChhhc--CCCCCcEEEccCCcCC
Q 039161 6 ELITLHLENNSLEGH--IHNTFANASHLRSLDLYSN--KLEGPLPRSLA--KYIKLEVVNVENNMIS 66 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~--~l~~L~~L~L~~n~l~ 66 (333)
.+..+.|++|++... ....-...++|..|+|++| .+. ....+. +...|++|-+.+|++.
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 455666666655321 1111123455666666666 222 111111 1234556666666554
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.22 E-value=2.5 Score=46.58 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=30.1
Q ss_pred EccCCcCCCCCccccccCCCCcEEeCCCCcCCC
Q 039161 197 NLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 229 (333)
Q Consensus 197 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 229 (333)
||++|+|+.+.+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999998888899999999999999999874
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.92 E-value=1.6 Score=40.06 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=37.8
Q ss_pred CCCCCcEEEccCCcCCCcc--cccccCCCCCCEEEcccC--cCCCCCCCCCCcccCCcccEEEcCCCccccc
Q 039161 51 KYIKLEVVNVENNMISDSF--PCWMGSLSELKILVLRSN--QFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118 (333)
Q Consensus 51 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 118 (333)
+.+.+..+.|++|++...- ...-...|+|++|+|++| .+.... +....+..-|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~--el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES--ELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh--hhhhhcCCCHHHeeecCCccccc
Confidence 3456777778888765321 111123478888888887 332222 11113445677888888877644
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.28 E-value=16 Score=33.38 Aligned_cols=61 Identities=26% Similarity=0.243 Sum_probs=35.0
Q ss_pred CCccEEECCCCcCcCCCChhhcCC---CCCcEEEccCCcCCC---cccccccCCCCCCEEEcccCcC
Q 039161 29 SHLRSLDLYSNKLEGPLPRSLAKY---IKLEVVNVENNMISD---SFPCWMGSLSELKILVLRSNQF 89 (333)
Q Consensus 29 ~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l 89 (333)
..+++++++.|.....+|.....+ ..++.++.+...+.- ..+..++.-+++.+.+++.|..
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 346777888777776676655332 346666666554431 1222333445677777776654
No 93
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=66.15 E-value=7.6 Score=22.38 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=5.8
Q ss_pred CCcCcccEEEC
Q 039161 2 SFSTELITLHL 12 (333)
Q Consensus 2 ~l~~~L~~L~L 12 (333)
.+|+++++|.+
T Consensus 9 ~iP~~l~~L~~ 19 (44)
T PF05725_consen 9 SIPSSLKSLIF 19 (44)
T ss_pred eeCCCCeEEEE
Confidence 34555555555
No 94
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=45.13 E-value=8.1 Score=34.83 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=21.3
Q ss_pred ccccceeEEEeeehhHhHhheeeeeeec
Q 039161 305 SRFDWKMAKMGYASGLVIGLSIGYMVLS 332 (333)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (333)
......|+.|+|.+++||+.+|+++.||
T Consensus 363 ~LstgaIaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 363 GLSTGAIAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred cccccceeeeeehhHHHHHHHHHHHhhh
Confidence 3455678888888888888888887776
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=44.33 E-value=16 Score=18.06 Aligned_cols=11 Identities=45% Similarity=0.374 Sum_probs=5.1
Q ss_pred CCCcEEeCCCC
Q 039161 215 TALESLDLSFN 225 (333)
Q Consensus 215 ~~L~~L~Ls~n 225 (333)
++|++|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 96
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=40.19 E-value=9.4 Score=31.51 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=0.0
Q ss_pred cccceeEEEeeehhHhHhheeeeeeecC
Q 039161 306 RFDWKMAKMGYASGLVIGLSIGYMVLSK 333 (333)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r 333 (333)
...|..++....+++|+|+++|+++|+|
T Consensus 212 slq~~~iAL~sl~SLVIGFvlG~l~WKk 239 (273)
T PF02404_consen 212 SLQWPAIALPSLFSLVIGFVLGALYWKK 239 (273)
T ss_dssp ----------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666677788898988887764
No 97
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=37.64 E-value=38 Score=23.58 Aligned_cols=14 Identities=21% Similarity=0.112 Sum_probs=6.3
Q ss_pred ceeEEEeeehhHhH
Q 039161 309 WKMAKMGYASGLVI 322 (333)
Q Consensus 309 ~~~~~~~~~~~~~~ 322 (333)
..++.++++..+++
T Consensus 66 gaiagi~vg~~~~v 79 (96)
T PTZ00382 66 GAIAGISVAVVAVV 79 (96)
T ss_pred ccEEEEEeehhhHH
Confidence 34444554444333
No 98
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=37.57 E-value=24 Score=20.00 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=4.4
Q ss_pred EEeeehhHhHh
Q 039161 313 KMGYASGLVIG 323 (333)
Q Consensus 313 ~~~~~~~~~~~ 323 (333)
++++..++++.
T Consensus 16 ~VvVPV~vI~~ 26 (40)
T PF08693_consen 16 GVVVPVGVIII 26 (40)
T ss_pred EEEechHHHHH
Confidence 33444444333
No 99
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=29.95 E-value=17 Score=30.97 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred eEEEeeehhHhHhheeeeeeecC
Q 039161 311 MAKMGYASGLVIGLSIGYMVLSK 333 (333)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~r 333 (333)
+.++.+++.+++++++++++|+|
T Consensus 150 IpaVVI~~iLLIA~iIa~icyrr 172 (290)
T PF05454_consen 150 IPAVVIAAILLIAGIIACICYRR 172 (290)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444555556666677776664
No 100
>PRK10132 hypothetical protein; Provisional
Probab=24.99 E-value=8.6 Score=27.40 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=9.8
Q ss_pred eehhHhHhheeeeeeecC
Q 039161 316 YASGLVIGLSIGYMVLSK 333 (333)
Q Consensus 316 ~~~~~~~~~~~~~~~~~r 333 (333)
+++++.+|+++|+++.+|
T Consensus 90 vgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 90 VGTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 344555666666655544
No 101
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=24.92 E-value=25 Score=25.55 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=0.4
Q ss_pred cceeEEEeeehhHhHhheeeeeeecC
Q 039161 308 DWKMAKMGYASGLVIGLSIGYMVLSK 333 (333)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~r 333 (333)
.|.+...+....+|++++.+++++||
T Consensus 78 ~~pi~~sal~v~lVl~llsg~lv~rr 103 (129)
T PF12191_consen 78 LWPILGSALSVVLVLALLSGFLVWRR 103 (129)
T ss_dssp S-------------------------
T ss_pred ehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 34443333444445555556666665
No 102
>PRK10404 hypothetical protein; Provisional
Probab=22.46 E-value=16 Score=25.66 Aligned_cols=19 Identities=26% Similarity=0.683 Sum_probs=11.0
Q ss_pred eeehhHhHhheeeeeeecC
Q 039161 315 GYASGLVIGLSIGYMVLSK 333 (333)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~r 333 (333)
++++++.+|+++|+++.+|
T Consensus 83 avGiaagvGlllG~Ll~RR 101 (101)
T PRK10404 83 GIGVGAAVGLVLGLLLARR 101 (101)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3445556666666665554
Done!