Query 039161
Match_columns 333
No_of_seqs 297 out of 3402
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 11:23:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.9E-39 6.5E-44 312.5 21.3 284 6-293 419-757 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 3.7E-36 1.3E-40 259.9 16.0 259 5-284 50-312 (313)
3 3v47_A TOLL-like receptor 5B a 100.0 1.9E-32 6.4E-37 249.0 20.2 278 3-285 28-412 (455)
4 3rgz_A Protein brassinosteroid 100.0 1.9E-32 6.4E-37 263.9 20.0 235 6-258 395-699 (768)
5 3zyi_A Leucine-rich repeat-con 100.0 5.3E-32 1.8E-36 245.7 20.8 231 3-252 73-303 (452)
6 3zyj_A Leucine-rich repeat-con 100.0 7.3E-32 2.5E-36 244.0 20.4 230 3-252 62-292 (440)
7 2id5_A Lingo-1, leucine rich r 100.0 6.2E-32 2.1E-36 247.0 19.1 275 3-285 30-337 (477)
8 2z66_A Variable lymphocyte rec 100.0 7.1E-31 2.4E-35 226.3 17.3 232 3-252 26-261 (306)
9 1ogq_A PGIP-2, polygalacturona 100.0 1E-31 3.4E-36 232.1 12.0 230 2-253 74-306 (313)
10 4g8a_A TOLL-like receptor 4; l 100.0 9.7E-31 3.3E-35 247.1 19.8 114 2-117 49-162 (635)
11 3t6q_A CD180 antigen; protein- 100.0 5.5E-31 1.9E-35 247.7 17.0 272 3-285 277-564 (606)
12 1ozn_A Reticulon 4 receptor; N 100.0 6.7E-31 2.3E-35 224.1 15.0 210 4-255 31-241 (285)
13 3o6n_A APL1; leucine-rich repe 100.0 4E-30 1.4E-34 229.0 17.7 264 6-285 70-356 (390)
14 1xku_A Decorin; proteoglycan, 100.0 1.2E-29 4.2E-34 220.9 20.3 257 3-283 50-308 (330)
15 3v47_A TOLL-like receptor 5B a 100.0 9.6E-30 3.3E-34 231.2 19.0 252 6-258 55-414 (455)
16 4fcg_A Uncharacterized protein 100.0 9.6E-30 3.3E-34 221.0 18.0 209 5-258 81-296 (328)
17 2ft3_A Biglycan; proteoglycan, 100.0 3.3E-29 1.1E-33 218.3 21.0 253 5-282 54-308 (332)
18 2id5_A Lingo-1, leucine rich r 100.0 2.6E-30 8.9E-35 236.3 14.2 250 2-255 54-336 (477)
19 3oja_B Anopheles plasmodium-re 100.0 1E-29 3.5E-34 238.3 17.9 264 6-285 76-362 (597)
20 2z80_A TOLL-like receptor 2, v 100.0 1.8E-30 6.3E-35 228.2 11.2 259 3-284 50-317 (353)
21 1ozn_A Reticulon 4 receptor; N 100.0 4.9E-29 1.7E-33 212.6 18.3 229 8-286 14-243 (285)
22 2z62_A TOLL-like receptor 4, v 100.0 1E-28 3.4E-33 209.7 18.9 212 3-257 26-242 (276)
23 3t6q_A CD180 antigen; protein- 100.0 1E-28 3.4E-33 232.3 20.3 252 2-257 30-343 (606)
24 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-29 8.1E-34 244.6 16.3 263 5-285 266-564 (844)
25 1ziw_A TOLL-like receptor 3; i 100.0 7.6E-29 2.6E-33 236.2 18.9 273 6-286 330-627 (680)
26 4eco_A Uncharacterized protein 100.0 1.5E-28 5.3E-33 231.7 17.6 262 6-282 306-601 (636)
27 3zyj_A Leucine-rich repeat-con 100.0 7.8E-28 2.7E-32 217.6 20.4 206 2-229 86-293 (440)
28 3zyi_A Leucine-rich repeat-con 100.0 8.5E-28 2.9E-32 218.1 20.4 207 2-229 97-304 (452)
29 4fcg_A Uncharacterized protein 100.0 2.6E-28 8.9E-33 212.0 16.2 203 3-252 103-314 (328)
30 2z63_A TOLL-like receptor 4, v 100.0 9.6E-28 3.3E-32 224.0 20.9 112 3-116 26-137 (570)
31 2z66_A Variable lymphocyte rec 100.0 4.9E-28 1.7E-32 208.5 17.0 237 2-257 50-292 (306)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-27 4.5E-32 222.7 21.0 109 3-116 50-159 (562)
33 3j0a_A TOLL-like receptor 5; m 100.0 4.7E-28 1.6E-32 235.6 18.1 252 3-254 22-353 (844)
34 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-27 4E-32 221.0 19.7 107 4-115 20-127 (520)
35 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-27 1.1E-31 225.0 22.4 248 3-253 23-310 (680)
36 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-28 7.3E-33 230.1 13.9 254 6-286 286-563 (606)
37 4eco_A Uncharacterized protein 100.0 8.6E-29 2.9E-33 233.4 11.0 249 2-258 204-506 (636)
38 2o6q_A Variable lymphocyte rec 100.0 7.6E-27 2.6E-31 197.4 21.7 207 5-256 16-222 (270)
39 3o6n_A APL1; leucine-rich repe 100.0 1.8E-27 6.1E-32 211.9 18.3 239 2-254 91-354 (390)
40 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-27 5.1E-32 221.7 18.4 117 166-285 360-514 (549)
41 3oja_B Anopheles plasmodium-re 100.0 1E-27 3.6E-32 224.7 17.2 263 2-279 97-384 (597)
42 1xku_A Decorin; proteoglycan, 100.0 4.5E-27 1.5E-31 204.6 19.6 225 2-252 74-306 (330)
43 2z62_A TOLL-like receptor 4, v 99.9 8.2E-27 2.8E-31 197.9 18.7 226 9-285 11-241 (276)
44 2z80_A TOLL-like receptor 2, v 99.9 9.1E-28 3.1E-32 211.0 13.2 236 2-256 74-318 (353)
45 2ft3_A Biglycan; proteoglycan, 99.9 8.4E-27 2.9E-31 203.1 19.0 224 2-252 76-307 (332)
46 2o6q_A Variable lymphocyte rec 99.9 3.3E-26 1.1E-30 193.4 21.7 207 29-285 16-222 (270)
47 1wwl_A Monocyte differentiatio 99.9 3.5E-28 1.2E-32 209.9 9.6 224 6-281 64-309 (312)
48 2z7x_B TOLL-like receptor 1, v 99.9 2.9E-27 1E-31 218.4 16.4 248 2-258 43-418 (520)
49 4ecn_A Leucine-rich repeat pro 99.9 1.2E-26 4E-31 223.4 20.7 263 3-281 547-840 (876)
50 1p9a_G Platelet glycoprotein I 99.9 1.3E-26 4.6E-31 197.6 18.6 202 2-253 8-209 (290)
51 4ecn_A Leucine-rich repeat pro 99.9 2.6E-27 9E-32 227.9 14.6 230 5-256 323-661 (876)
52 3vq2_A TLR4, TOLL-like recepto 99.9 5.9E-27 2E-31 220.3 16.3 233 3-257 327-563 (606)
53 3rfs_A Internalin B, repeat mo 99.9 5.6E-26 1.9E-30 192.2 20.7 200 6-258 42-241 (272)
54 3o53_A Protein LRIM1, AGAP0063 99.9 4E-27 1.4E-31 203.7 13.3 216 6-252 35-250 (317)
55 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-26 6.4E-31 214.4 18.5 87 165-252 332-423 (549)
56 3oja_A Leucine-rich immune mol 99.9 9.4E-27 3.2E-31 212.6 15.4 216 6-252 35-250 (487)
57 4g8a_A TOLL-like receptor 4; l 99.9 7.8E-26 2.7E-30 213.5 20.9 275 2-285 74-584 (635)
58 1p9a_G Platelet glycoprotein I 99.9 2.1E-25 7.1E-30 190.2 19.7 208 24-285 5-212 (290)
59 4fmz_A Internalin; leucine ric 99.9 2.6E-25 8.7E-30 194.9 19.5 235 2-253 86-325 (347)
60 2xwt_C Thyrotropin receptor; s 99.9 7E-26 2.4E-30 188.0 14.6 197 5-249 31-236 (239)
61 1wwl_A Monocyte differentiatio 99.9 2.8E-27 9.7E-32 204.2 6.0 222 6-282 44-288 (312)
62 3rfs_A Internalin B, repeat mo 99.9 1.2E-25 4E-30 190.2 15.6 203 7-257 21-223 (272)
63 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-25 5.8E-30 208.4 17.6 125 7-139 33-157 (562)
64 2z63_A TOLL-like receptor 4, v 99.9 9.5E-26 3.2E-30 210.5 14.8 230 6-258 305-537 (570)
65 4fmz_A Internalin; leucine ric 99.9 1.4E-24 4.6E-29 190.3 20.5 256 6-281 45-324 (347)
66 4glp_A Monocyte differentiatio 99.9 3.1E-26 1E-30 197.6 9.8 201 7-252 66-285 (310)
67 3m19_A Variable lymphocyte rec 99.9 9.6E-25 3.3E-29 182.4 17.2 180 6-254 15-194 (251)
68 3o53_A Protein LRIM1, AGAP0063 99.9 3.5E-26 1.2E-30 197.8 7.2 225 2-258 56-282 (317)
69 3oja_A Leucine-rich immune mol 99.9 7E-26 2.4E-30 206.8 9.4 215 2-248 56-271 (487)
70 3m19_A Variable lymphocyte rec 99.9 5.2E-24 1.8E-28 178.0 19.9 162 3-230 33-194 (251)
71 1o6v_A Internalin A; bacterial 99.9 3.5E-24 1.2E-28 195.0 19.9 235 3-253 67-323 (466)
72 1h6u_A Internalin H; cell adhe 99.9 4.1E-24 1.4E-28 183.9 18.3 190 6-253 42-231 (308)
73 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-23 4.4E-28 190.3 20.5 205 3-231 41-249 (457)
74 1o6v_A Internalin A; bacterial 99.9 2E-23 6.7E-28 190.1 20.6 211 6-252 178-388 (466)
75 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-23 6.5E-28 189.2 19.5 233 2-257 62-304 (457)
76 2xwt_C Thyrotropin receptor; s 99.9 2.3E-24 7.9E-29 178.8 11.9 192 17-258 23-223 (239)
77 4glp_A Monocyte differentiatio 99.9 5.6E-24 1.9E-28 183.4 14.1 205 6-252 92-307 (310)
78 1jl5_A Outer protein YOPM; leu 99.9 1.2E-22 4.1E-27 183.8 20.4 229 4-258 130-378 (454)
79 3goz_A Leucine-rich repeat-con 99.9 1.3E-24 4.4E-29 191.5 4.0 238 4-252 21-297 (362)
80 2ca6_A RAN GTPase-activating p 99.9 2.4E-25 8.3E-30 197.9 -0.7 241 6-256 33-320 (386)
81 4ay9_X Follicle-stimulating ho 99.9 4.3E-23 1.5E-27 180.8 12.7 194 3-238 28-225 (350)
82 3g06_A SSPH2 (leucine-rich rep 99.9 4.6E-22 1.6E-26 185.6 18.9 223 5-257 61-302 (622)
83 1jl5_A Outer protein YOPM; leu 99.9 6E-22 2.1E-26 179.2 18.9 226 6-258 154-417 (454)
84 3cvr_A Invasion plasmid antige 99.9 3.6E-22 1.2E-26 184.2 17.0 183 6-258 60-249 (571)
85 1h6u_A Internalin H; cell adhe 99.9 3.7E-22 1.3E-26 171.7 14.6 188 10-255 24-211 (308)
86 2o6s_A Variable lymphocyte rec 99.9 3.8E-22 1.3E-26 161.8 13.8 86 166-258 99-184 (208)
87 2o6s_A Variable lymphocyte rec 99.9 8.7E-22 3E-26 159.7 15.7 182 7-240 9-190 (208)
88 2ast_B S-phase kinase-associat 99.9 1.8E-23 6.2E-28 182.3 4.9 224 6-249 48-282 (336)
89 3g06_A SSPH2 (leucine-rich rep 99.9 6.7E-21 2.3E-25 177.7 20.5 238 6-281 41-297 (622)
90 3goz_A Leucine-rich repeat-con 99.9 5E-23 1.7E-27 181.3 4.4 264 9-282 2-298 (362)
91 1h6t_A Internalin B; cell adhe 99.9 2.3E-21 7.7E-26 165.4 13.4 186 10-253 29-214 (291)
92 2ast_B S-phase kinase-associat 99.9 1.7E-22 5.9E-27 176.0 5.6 235 5-258 70-312 (336)
93 2xot_A Amphoterin-induced prot 99.9 4.8E-21 1.7E-25 168.5 13.6 176 8-228 21-202 (361)
94 1h6t_A Internalin B; cell adhe 99.8 1.1E-20 3.8E-25 161.1 14.6 168 6-229 47-214 (291)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 5.6E-21 1.9E-25 156.2 11.3 91 166-256 80-170 (220)
96 1m9s_A Internalin B; cell inva 99.8 9.8E-21 3.3E-25 176.4 14.2 189 7-253 23-211 (605)
97 2xot_A Amphoterin-induced prot 99.8 9.7E-21 3.3E-25 166.5 12.9 178 31-253 20-203 (361)
98 4ay9_X Follicle-stimulating ho 99.8 1.7E-20 5.7E-25 164.4 14.3 205 7-258 11-220 (350)
99 2ca6_A RAN GTPase-activating p 99.8 2.8E-23 9.5E-28 184.6 -3.5 245 20-284 23-319 (386)
100 2v9t_B SLIT homolog 2 protein 99.8 3.4E-20 1.1E-24 151.5 15.0 80 32-116 14-93 (220)
101 1z7x_W Ribonuclease inhibitor; 99.8 5.4E-23 1.8E-27 187.0 -2.5 132 6-138 86-237 (461)
102 3e6j_A Variable lymphocyte rec 99.8 1.1E-19 3.8E-24 149.4 17.1 153 30-228 20-172 (229)
103 2v9t_B SLIT homolog 2 protein 99.8 5.7E-20 1.9E-24 150.2 15.2 154 55-253 13-166 (220)
104 1z7x_W Ribonuclease inhibitor; 99.8 1.6E-22 5.4E-27 183.9 -0.3 248 2-252 111-411 (461)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 4.9E-20 1.7E-24 150.5 14.4 115 166-285 56-170 (220)
106 1m9s_A Internalin B; cell inva 99.8 5.9E-20 2E-24 171.1 16.5 171 6-232 44-214 (605)
107 1xeu_A Internalin C; cellular 99.8 5.5E-20 1.9E-24 154.4 13.4 79 168-252 107-185 (263)
108 3e6j_A Variable lymphocyte rec 99.8 2.4E-19 8.3E-24 147.4 16.4 157 54-256 20-176 (229)
109 3cvr_A Invasion plasmid antige 99.8 9.2E-20 3.1E-24 168.2 13.9 169 4-239 79-254 (571)
110 4ezg_A Putative uncharacterize 99.8 2.8E-19 9.6E-24 143.6 11.9 153 50-252 41-194 (197)
111 4ezg_A Putative uncharacterize 99.8 5E-19 1.7E-23 142.1 13.0 154 26-229 41-195 (197)
112 1dce_A Protein (RAB geranylger 99.8 3.6E-21 1.2E-25 178.2 -2.7 88 166-256 462-550 (567)
113 1w8a_A SLIT protein; signaling 99.8 8.3E-19 2.8E-23 140.2 10.1 91 166-256 53-143 (192)
114 4b8c_D Glucose-repressible alc 99.8 4.2E-19 1.4E-23 169.2 5.3 90 22-116 217-306 (727)
115 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.7E-22 140.4 13.0 168 6-230 20-187 (263)
116 3sb4_A Hypothetical leucine ri 99.7 6.3E-18 2.2E-22 146.7 11.4 90 166-258 225-315 (329)
117 1dce_A Protein (RAB geranylger 99.7 1.2E-20 4.1E-25 174.7 -6.2 193 6-246 350-567 (567)
118 2wfh_A SLIT homolog 2 protein 99.7 2.4E-17 8.3E-22 131.6 12.3 113 167-285 31-143 (193)
119 2ell_A Acidic leucine-rich nuc 99.7 8.6E-18 2.9E-22 131.3 9.0 86 28-117 23-109 (168)
120 1w8a_A SLIT protein; signaling 99.7 4.4E-17 1.5E-21 130.1 12.9 131 32-231 11-142 (192)
121 3sb4_A Hypothetical leucine ri 99.7 1E-17 3.5E-22 145.4 8.5 106 166-279 201-308 (329)
122 2ell_A Acidic leucine-rich nuc 99.7 5.7E-17 2E-21 126.6 11.2 61 53-117 24-85 (168)
123 4b8c_D Glucose-repressible alc 99.7 4.3E-18 1.5E-22 162.3 5.1 144 44-233 215-359 (727)
124 2wfh_A SLIT homolog 2 protein 99.7 1.8E-16 6E-21 126.6 12.9 108 6-116 32-139 (193)
125 2o6r_A Variable lymphocyte rec 99.7 2.1E-16 7.2E-21 124.5 12.6 113 4-118 27-139 (177)
126 2je0_A Acidic leucine-rich nuc 99.7 1.2E-16 4.3E-21 122.1 9.7 57 167-223 88-148 (149)
127 2je0_A Acidic leucine-rich nuc 99.7 2.8E-17 9.5E-22 125.7 5.9 112 4-119 16-129 (149)
128 3ogk_B Coronatine-insensitive 99.7 9.2E-18 3.2E-22 157.2 2.4 245 6-253 165-502 (592)
129 2o6r_A Variable lymphocyte rec 99.7 7.8E-16 2.7E-20 121.2 13.0 91 166-256 51-141 (177)
130 3ogk_B Coronatine-insensitive 99.7 1.8E-18 6E-23 162.1 -3.2 91 163-253 432-527 (592)
131 4fdw_A Leucine rich hypothetic 99.7 2.2E-15 7.4E-20 133.7 15.8 215 6-249 114-333 (401)
132 1a9n_A U2A', U2A'; complex (nu 99.6 9.2E-16 3.1E-20 120.7 8.4 63 25-91 15-78 (176)
133 3g39_A Variable lymphocyte rec 99.6 1E-15 3.4E-20 119.6 8.4 91 166-256 29-119 (170)
134 4fdw_A Leucine rich hypothetic 99.6 9.4E-15 3.2E-19 129.6 15.1 218 6-252 136-358 (401)
135 3g39_A Variable lymphocyte rec 99.6 6.4E-15 2.2E-19 115.0 11.8 108 6-118 10-117 (170)
136 1a9n_A U2A', U2A'; complex (nu 99.6 3.2E-15 1.1E-19 117.5 9.2 84 167-252 64-153 (176)
137 1ds9_A Outer arm dynein; leuci 99.6 2.6E-17 9E-22 132.1 -3.6 150 25-221 14-180 (198)
138 2r9u_A Variable lymphocyte rec 99.6 1.6E-14 5.5E-19 113.2 11.7 107 7-118 14-120 (174)
139 1ds9_A Outer arm dynein; leuci 99.6 1.9E-17 6.6E-22 132.9 -5.6 155 49-252 14-185 (198)
140 2r9u_A Variable lymphocyte rec 99.6 2E-14 6.7E-19 112.7 10.9 89 166-254 32-120 (174)
141 2p1m_B Transport inhibitor res 99.5 1E-15 3.5E-20 143.3 1.0 66 187-253 428-495 (594)
142 2p1m_B Transport inhibitor res 99.5 7E-16 2.4E-20 144.5 -1.8 87 165-252 287-385 (594)
143 3un9_A NLR family member X1; l 99.5 1.3E-15 4.3E-20 133.9 -4.2 64 166-229 182-253 (372)
144 2ifg_A High affinity nerve gro 99.4 8.2E-13 2.8E-17 115.3 10.7 106 8-118 11-118 (347)
145 2ifg_A High affinity nerve gro 99.4 7.8E-13 2.7E-17 115.4 8.9 86 166-252 30-116 (347)
146 3un9_A NLR family member X1; l 99.4 5.2E-15 1.8E-19 130.0 -5.3 166 52-253 71-253 (372)
147 4fs7_A Uncharacterized protein 99.2 2E-10 6.7E-15 102.0 13.3 63 185-249 291-353 (394)
148 2ra8_A Uncharacterized protein 99.1 6.3E-11 2.2E-15 103.3 6.4 190 23-250 133-341 (362)
149 2ra8_A Uncharacterized protein 99.1 2.1E-11 7.2E-16 106.3 3.1 181 29-252 107-320 (362)
150 4gt6_A Cell surface protein; l 99.1 1.2E-09 4.2E-14 96.8 13.7 80 166-248 264-343 (394)
151 4fs7_A Uncharacterized protein 99.0 1.4E-09 4.7E-14 96.5 10.6 219 20-249 153-376 (394)
152 4gt6_A Cell surface protein; l 98.9 6.6E-09 2.3E-13 92.1 11.6 110 123-251 260-369 (394)
153 4h09_A Hypothetical leucine ri 98.8 8.1E-08 2.8E-12 84.6 14.7 82 166-249 239-320 (379)
154 1io0_A Tropomodulin; LRR prote 98.7 2.7E-09 9.4E-14 84.1 0.5 111 6-116 37-164 (185)
155 3rw6_A Nuclear RNA export fact 98.6 2.2E-08 7.5E-13 82.9 5.2 103 6-110 142-258 (267)
156 1io0_A Tropomodulin; LRR prote 98.6 6.8E-09 2.3E-13 81.7 1.0 19 72-90 31-50 (185)
157 3rw6_A Nuclear RNA export fact 98.5 9.5E-08 3.3E-12 79.1 5.8 67 188-256 167-237 (267)
158 4h09_A Hypothetical leucine ri 98.4 2E-06 6.7E-11 75.6 12.5 218 6-249 114-343 (379)
159 3e4g_A ATP synthase subunit S, 98.4 6.4E-08 2.2E-12 74.5 2.4 84 29-114 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.2 2E-07 7E-12 71.7 0.6 84 167-250 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00014 4.9E-09 56.9 4.7 89 25-113 37-136 (197)
162 3rfe_A Platelet glycoprotein I 97.3 0.00053 1.8E-08 50.0 6.1 36 54-89 32-67 (130)
163 3rfe_A Platelet glycoprotein I 97.2 0.00067 2.3E-08 49.5 6.4 57 170-228 11-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00016 5.5E-09 56.6 2.8 84 166-249 40-136 (197)
165 2lz0_A Uncharacterized protein 83.5 2.5 8.5E-05 28.7 5.3 45 41-86 8-52 (100)
166 2lz0_A Uncharacterized protein 79.5 3.1 0.00011 28.2 4.7 47 15-62 6-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-39 Score=312.53 Aligned_cols=284 Identities=31% Similarity=0.475 Sum_probs=209.0
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+|++|++++|.+++..|..|.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 56666666666666666666666666666666666666666666666677777777777766666667777777777777
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc--ccccccccCc------------e
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE--YMGRAFCDES------------I 151 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~--~~~~~~~~~~------------~ 151 (333)
+|++++..|.++ ..+++|++|++++|.+++.+|.. +..+++|+.+++.+|.- .++...+... .
T Consensus 499 ~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 499 NNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp SSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred CCccCCcCChHH--hcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 777776666555 56677777777777777666654 55666777777665532 1111111000 0
Q ss_pred -----------------EEee------------------------cCcchhhhhhhhccceEEccCcccCccchhhhhCC
Q 039161 152 -----------------TVAM------------------------KGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNF 190 (333)
Q Consensus 152 -----------------~~~~------------------------~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 190 (333)
.... .+........++.|+.||+++|++++.+|..++.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 0000 00000111225789999999999999999999999
Q ss_pred CCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccc
Q 039161 191 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYI 270 (333)
Q Consensus 191 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~ 270 (333)
+.|+.|+|++|+++|.+|..++.+++|+.|||++|++++.+|..+..+++|+.||+++|+++|.+|...++.+|....|.
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~ 735 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGC
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCC
Q 039161 271 GNIRLCGEPLTVRCSNDGLPKAP 293 (333)
Q Consensus 271 ~~~~l~g~~~~~~C~~~~~~~~~ 293 (333)
+|+.+||.|+. .|........+
T Consensus 736 gN~~Lcg~~l~-~C~~~~~~~~~ 757 (768)
T 3rgz_A 736 NNPGLCGYPLP-RCDPSNADGYA 757 (768)
T ss_dssp SCTEEESTTSC-CCCSCC-----
T ss_pred CCchhcCCCCc-CCCCCccCCCC
Confidence 99999999987 78765444333
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.7e-36 Score=259.90 Aligned_cols=259 Identities=25% Similarity=0.372 Sum_probs=227.0
Q ss_pred CcccEEECcCCcccc--ccchhhhCCCCccEEECCC-CcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 5 TELITLHLENNSLEG--HIHNTFANASHLRSLDLYS-NKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 5 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
.+++.|+|++|.+++ ..|..|.++++|++|++++ |.+++.+|..|.++++|++|++++|.+++..|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 479999999999998 8899999999999999995 9999999999999999999999999999889999999999999
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChH-HhhhhcccCcccccccccccCceEEeecCcch
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSME-AMKNVDEQGRLEYMGRAFCDESITVAMKGHDF 160 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~-~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (333)
|++++|.+++..+..+ ..+++|++|++++|.+++.+|.. +..+. .|+.+++..+...- ...
T Consensus 130 L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~---------------~~~ 191 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSI--SSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG---------------KIP 191 (313)
T ss_dssp EECCSSEEESCCCGGG--GGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE---------------ECC
T ss_pred EeCCCCccCCcCChHH--hcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec---------------cCC
Confidence 9999999998877766 78999999999999999888877 44454 88888887664210 001
Q ss_pred hhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCc
Q 039161 161 QLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240 (333)
Q Consensus 161 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 240 (333)
.....+. |+.|++++|.+++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 1111133 99999999999999999999999999999999999976665 788999999999999999999999999999
Q ss_pred cceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCC
Q 039161 241 LALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC 284 (333)
Q Consensus 241 L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C 284 (333)
|+.|++++|+++|.+|....+..++...+.+|+.+||.|+. .|
T Consensus 270 L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 99999999999999999877778888888899999998776 36
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-32 Score=249.02 Aligned_cols=278 Identities=20% Similarity=0.252 Sum_probs=187.6
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCC-ChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPL-PRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
+|+++++|+|++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|..+++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 3467888888888888887888888888888888888876443 567888888888888888888777778888888888
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-cccccc-------------
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGRAFC------------- 147 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~~~~------------- 147 (333)
|++++|.+++..+....+..+++|++|++++|.+++..|..++..+++|+.+++.++... +.....
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 888888877633222112667778888888887776666665667777777766554311 000000
Q ss_pred ------------------------cCceEEeecC----------------------------------------------
Q 039161 148 ------------------------DESITVAMKG---------------------------------------------- 157 (333)
Q Consensus 148 ------------------------~~~~~~~~~~---------------------------------------------- 157 (333)
..........
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 0000000000
Q ss_pred ----------------------cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCC
Q 039161 158 ----------------------HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT 215 (333)
Q Consensus 158 ----------------------~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 215 (333)
........+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 0011122356677777777777766666777777777777777777766677777777
Q ss_pred CCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161 216 ALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~ 285 (333)
+|++|+|++|.+++..|..+..+++|+.|++++|++++ +|.. .+........+.+.+||+.|+|+
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~----~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDG----IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTT----TTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHh----HhccCCcccEEEccCCCcccCCC
Confidence 77777777777776667777777778888888877763 3332 23444455667889999999997
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-32 Score=263.86 Aligned_cols=235 Identities=30% Similarity=0.385 Sum_probs=193.6
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+|++|++++|.+++..|..|.++++|++|++++|.+++.+|..|.++++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 68888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|++++..+..+ ..+++|++|++++|.+++.+|.. +..+++|+.+++.+|.-. +........
T Consensus 475 ~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~---------------~~~p~~l~~ 536 (768)
T 3rgz_A 475 FNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFS---------------GNIPAELGD 536 (768)
T ss_dssp SSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCE---------------EECCGGGGG
T ss_pred CCcccCcCCHHH--hcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCccc---------------CcCCHHHcC
Confidence 888887777665 77888888888888888877765 667778888887765321 001111223
Q ss_pred hhccceEEccCcccCccchhh-----------------------------------------------------------
Q 039161 166 FVMFRAMDFSSNRFHGEISEV----------------------------------------------------------- 186 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~----------------------------------------------------------- 186 (333)
+++|+.|++++|.+++.+|..
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 677888888888777665543
Q ss_pred -----------hhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecC
Q 039161 187 -----------LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRI 255 (333)
Q Consensus 187 -----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 255 (333)
+..+++|+.|+|++|+++|.+|..++.+++|+.|+|++|.+++.+|..+..+++|+.||+++|+++|.+
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred cceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence 334578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 039161 256 PRG 258 (333)
Q Consensus 256 p~~ 258 (333)
|..
T Consensus 697 p~~ 699 (768)
T 3rgz_A 697 PQA 699 (768)
T ss_dssp CGG
T ss_pred ChH
Confidence 975
No 5
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=5.3e-32 Score=245.70 Aligned_cols=231 Identities=19% Similarity=0.172 Sum_probs=166.3
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
+|+++++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.++...+..|..+++|++|
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 45678888888888888888888888888888888888887777888888888888888888887666678888888888
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhh
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQL 162 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (333)
++++|+++..++..+ ..+++|++|++++|+..+.++...+..+++|+.+++..+...--. .
T Consensus 153 ~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-----------------~ 213 (452)
T 3zyi_A 153 WLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-----------------N 213 (452)
T ss_dssp ECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-----------------C
T ss_pred ECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-----------------c
Confidence 888888887776665 778888888888865544666655666666666666554211000 0
Q ss_pred hhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccc
Q 039161 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242 (333)
Q Consensus 163 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 242 (333)
...+++|++|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|.+++..+..+..+++|+
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 11245666777777776666666666667777777777777666666666667777777777777655555666666677
Q ss_pred eeecccCcce
Q 039161 243 LLNLSYNRLW 252 (333)
Q Consensus 243 ~L~l~~N~l~ 252 (333)
.|++++|++.
T Consensus 294 ~L~L~~Np~~ 303 (452)
T 3zyi_A 294 ELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcC
Confidence 7777777665
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=7.3e-32 Score=243.97 Aligned_cols=230 Identities=18% Similarity=0.201 Sum_probs=152.6
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
+|++++.|+|++|++++..+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|.++...+..|..+++|++|
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 34567888888888887777788888888888888888887777778888888888888888876666677788888888
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-cccccccCceEEeecCcchh
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGRAFCDESITVAMKGHDFQ 161 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 161 (333)
++++|.+...++..+ ..+++|++|++++|+..+.++...+..+++|+.|++.++... ++
T Consensus 142 ~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------------------ 201 (440)
T 3zyj_A 142 WLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP------------------ 201 (440)
T ss_dssp ECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC------------------
T ss_pred eCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc------------------
Confidence 888888877766655 677888888888755444555555666656655555544211 00
Q ss_pred hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcc
Q 039161 162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241 (333)
Q Consensus 162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 241 (333)
....+++|+.|++++|++++..|..|..+++|+.|++++|++++..+..|.++++|+.|+|++|.+++..+..+..+++|
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 01114556666666666665555556666666666666666665555556666666666666666665555555556666
Q ss_pred ceeecccCcce
Q 039161 242 ALLNLSYNRLW 252 (333)
Q Consensus 242 ~~L~l~~N~l~ 252 (333)
+.|++++|++.
T Consensus 282 ~~L~L~~Np~~ 292 (440)
T 3zyj_A 282 ERIHLHHNPWN 292 (440)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEcCCCCcc
Confidence 66666666655
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.2e-32 Score=247.04 Aligned_cols=275 Identities=16% Similarity=0.160 Sum_probs=202.1
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
+|+++++|+|++|++++..+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|.++...+..|..+++|++|
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 55678888888888888888888888888888888888888778888888888888888888886666677888888888
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccc----------------
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRA---------------- 145 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~---------------- 145 (333)
++++|.+.+..+..+ ..+++|++|++++|.+++..+. .+..+++|+.+++.++.. .+...
T Consensus 110 ~Ls~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 110 DISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp ECTTSCCCEECTTTT--TTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred ECCCCccccCChhHc--cccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 888888877766665 6677888888888877754443 356666777666655421 11100
Q ss_pred --------cc-----cCceEEeecCcch---hhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCcc
Q 039161 146 --------FC-----DESITVAMKGHDF---QLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV 209 (333)
Q Consensus 146 --------~~-----~~~~~~~~~~~~~---~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 209 (333)
.+ .....+....... .......+|+.|++++|+++...+..+..+++|+.|+|++|.+++..+.
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence 00 0000000000000 0000123788889999999866667888999999999999999988888
Q ss_pred ccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161 210 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 210 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~ 285 (333)
.|..+++|+.|+|++|.+++..|..+..+++|+.|++++|.+++ +|.. .|........+.+.+||+.|+|.
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~----~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-LEES----VFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC-CCGG----GBSCGGGCCEEECCSSCEECSGG
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce-eCHh----HcCCCcccCEEEccCCCccCccc
Confidence 89999999999999999998888999999999999999999974 3332 34444555667888999999885
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=7.1e-31 Score=226.30 Aligned_cols=232 Identities=21% Similarity=0.244 Sum_probs=149.9
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCC--CChhhcCCCCCcEEEccCCcCCCcccccccCCCCCC
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGP--LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELK 80 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (333)
+|+++++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~ 104 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 104 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCC
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCC
Confidence 456899999999999977777789999999999999998733 3677788999999999999988 4667788999999
Q ss_pred EEEcccCcCCCCCC-CCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161 81 ILVLRSNQFDCPPC-NSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD 159 (333)
Q Consensus 81 ~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (333)
+|++++|++++..+ ..+ ..+++|++|++++|.+++..+.. +..+++|+.+++.++...-. ..
T Consensus 105 ~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~--------------~~ 167 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVF--LSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQEN--------------FL 167 (306)
T ss_dssp EEECTTSEEESSTTTTTT--TTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGG--------------EE
T ss_pred EEECCCCcccccccchhh--hhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccc--------------cc
Confidence 99999999987765 344 77899999999999988655433 45545555544443321000 00
Q ss_pred hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccC
Q 039161 160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239 (333)
Q Consensus 160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 239 (333)
......+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..++
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 00011134455555555555544444455555555555555555544444445555555555555555544444444442
Q ss_pred -ccceeecccCcce
Q 039161 240 -ALALLNLSYNRLW 252 (333)
Q Consensus 240 -~L~~L~l~~N~l~ 252 (333)
+|+.|++++|+++
T Consensus 248 ~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 248 SSLAFLNLTQNDFA 261 (306)
T ss_dssp TTCCEEECTTCCEE
T ss_pred ccCCEEEccCCCee
Confidence 4555555555554
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1e-31 Score=232.09 Aligned_cols=230 Identities=23% Similarity=0.344 Sum_probs=199.7
Q ss_pred CCcCcccEEECcC-CccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCC
Q 039161 2 SFSTELITLHLEN-NSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELK 80 (333)
Q Consensus 2 ~l~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (333)
+++ +|++|++++ |.+.+..|..|.++++|++|++++|.+++.+|..|.++++|++|++++|.+++..|..+..+++|+
T Consensus 74 ~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 74 NLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred CCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 355 899999995 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCcCCCCCCCCCCcccCC-cccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161 81 ILVLRSNQFDCPPCNSNITFPFQ-ALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD 159 (333)
Q Consensus 81 ~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (333)
+|++++|++++..+..+ ..++ +|++|++++|.+++.+|.. +..++ |+.+++.++... +..
T Consensus 153 ~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l~---------------~~~ 213 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNMLE---------------GDA 213 (313)
T ss_dssp EEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSSEEE---------------ECC
T ss_pred eEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCCccc---------------CcC
Confidence 99999999997777665 6676 9999999999999888866 44554 888887765321 011
Q ss_pred hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccC
Q 039161 160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239 (333)
Q Consensus 160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 239 (333)
......+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|.. ..++
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~ 291 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGG
T ss_pred CHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccc
Confidence 12223378999999999999976666 788999999999999999999999999999999999999999988887 8899
Q ss_pred ccceeecccCc-cee
Q 039161 240 ALALLNLSYNR-LWG 253 (333)
Q Consensus 240 ~L~~L~l~~N~-l~~ 253 (333)
+|+.+++++|+ +.|
T Consensus 292 ~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 292 RFDVSAYANNKCLCG 306 (313)
T ss_dssp GSCGGGTCSSSEEES
T ss_pred ccChHHhcCCCCccC
Confidence 99999999998 544
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=9.7e-31 Score=247.09 Aligned_cols=114 Identities=17% Similarity=0.127 Sum_probs=96.4
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
++|+++++|||++|+|+++.+.+|.++++|++|+|++|+|++..+.+|.++++|++|+|++|++++..+.+|.++++|++
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 46778999999999999888888999999999999999999877888999999999999999998777778888999999
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccc
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTG 117 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~ 117 (333)
|++++|++++.++..+ ..+++|++|++++|.++.
T Consensus 129 L~Ls~N~l~~l~~~~~--~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 129 LVAVETNLASLENFPI--GHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp EECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCC
T ss_pred EECCCCcCCCCChhhh--hcCcccCeeccccCcccc
Confidence 9999998888776665 667777777777777654
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=5.5e-31 Score=247.75 Aligned_cols=272 Identities=21% Similarity=0.228 Sum_probs=189.4
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccc-cccCCCCCCE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPC-WMGSLSELKI 81 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~ 81 (333)
++ +|++|++++|.++ .+|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+..+++|++
T Consensus 277 l~-~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 277 FS-GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp CT-TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred cc-CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 45 7888888888888 5667788888888888888888877777888888888888888887755544 4778888888
Q ss_pred EEcccCcCCCCC--CCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-cc-cccc---cCceEEe
Q 039161 82 LVLRSNQFDCPP--CNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MG-RAFC---DESITVA 154 (333)
Q Consensus 82 L~L~~n~l~~~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~-~~~~---~~~~~~~ 154 (333)
|++++|.+.+.. +..+ ..+++|++|++++|.+++..|. .+..+++|+.+++.++... .. ...+ .......
T Consensus 355 L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp EECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred EECCCCccccccCcchhc--ccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 888888887665 3333 6778888888888887755443 3667777777777665421 10 0000 0011111
Q ss_pred e-----cCcchhhhhhhhccceEEccCcccCcc---chhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCc
Q 039161 155 M-----KGHDFQLQNIFVMFRAMDFSSNRFHGE---ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 226 (333)
Q Consensus 155 ~-----~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 226 (333)
. ..........+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..|..+++|++|++++|.
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 1 111122223367778888888877642 22457777788888888888877777777778888888888888
Q ss_pred CCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161 227 LDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 227 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~ 285 (333)
+++..|..+..+++| .|++++|++++..|. .+........+++.|||+.|+|.
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPS-----LLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGG-----GHHHHHTSSEEECTTCCEECSGG
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHh-----hcccCCCCCEEeCCCCCccccCC
Confidence 877777777777777 888888888754443 23344445677899999999997
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=6.7e-31 Score=224.13 Aligned_cols=210 Identities=20% Similarity=0.175 Sum_probs=132.6
Q ss_pred cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCc-CCCcccccccCCCCCCEE
Q 039161 4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM-ISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 82 (333)
|+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|. ++...+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3456666666666665555556666666666666666655555556666666666666665 554445555556666666
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhh
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQL 162 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (333)
++++|.+++..+..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 111 ~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-~~~~------------------------------------- 150 (285)
T 1ozn_A 111 HLDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPD-DTFR------------------------------------- 150 (285)
T ss_dssp ECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT-TTTT-------------------------------------
T ss_pred ECCCCcCCEECHhHh--hCCcCCCEEECCCCcccccCH-hHhc-------------------------------------
Confidence 666666655554444 455566666666665552221 1111
Q ss_pred hhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccc
Q 039161 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242 (333)
Q Consensus 163 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 242 (333)
.+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 151 --~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 151 --DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp --TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred --cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 156677777777777755555677777777777777777777777777777777777777777765555677777777
Q ss_pred eeecccCcceecC
Q 039161 243 LLNLSYNRLWGRI 255 (333)
Q Consensus 243 ~L~l~~N~l~~~~ 255 (333)
.|++++|++.+..
T Consensus 229 ~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 229 YLRLNDNPWVCDC 241 (285)
T ss_dssp EEECCSSCEECSG
T ss_pred EEeccCCCccCCC
Confidence 7777777776433
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4e-30 Score=229.05 Aligned_cols=264 Identities=17% Similarity=0.159 Sum_probs=142.3
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 45555555555554444455555555555555555554444445555555555555555553333334455555555555
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-ccc-------------------c
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGR-------------------A 145 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~-------------------~ 145 (333)
+|++++..+..+ ..+++|++|++++|.+++. + ...++.|+.+++..+... +.. .
T Consensus 150 ~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~ 223 (390)
T 3o6n_A 150 NNNLERIEDDTF--QATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223 (390)
T ss_dssp SSCCCBCCTTTT--SSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred CCccCccChhhc--cCCCCCCEEECCCCcCCcc-c---cccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence 555554444433 4455555555555555432 1 122233333332222100 000 0
Q ss_pred cccCceEEeec---CcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeC
Q 039161 146 FCDESITVAMK---GHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 222 (333)
Q Consensus 146 ~~~~~~~~~~~---~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 222 (333)
........... .........+++|++|++++|.+++..|..+..+++|++|++++|++++ +|..+..+++|++|++
T Consensus 224 ~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 302 (390)
T ss_dssp CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEEC
T ss_pred ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEEC
Confidence 00000000000 0001122335677777887777776667777777788888888887774 4555566778888888
Q ss_pred CCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161 223 SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 223 s~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~ 285 (333)
++|.++ .+|..+..+++|+.|++++|++++ +| +........+.+.+||+.|+|.
T Consensus 303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~-------~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK-------LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC-------CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCcce-ecCccccccCcCCEEECCCCccce-eC-------chhhccCCEEEcCCCCccchhH
Confidence 888777 456666777788888888888762 22 1222334566889999998774
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.2e-29 Score=220.87 Aligned_cols=257 Identities=18% Similarity=0.222 Sum_probs=182.5
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
+|+.+++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|..+. ++|++|
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L 126 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQEL 126 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEE
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEE
Confidence 3456777777777777766667777777777777777777666777777777777777777776 3444433 677777
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCccccc-CCcccccChHHhhhhcccCcccccccccccCceEEeecCcchh
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF-LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ 161 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (333)
++++|.+++..+..+ ..+++|++|++++|.++.. .....+..+++|+.+++..+... ..+.
T Consensus 127 ~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~---------------~l~~- 188 (330)
T 1xku_A 127 RVHENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---------------TIPQ- 188 (330)
T ss_dssp ECCSSCCCBBCHHHH--TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC---------------SCCS-
T ss_pred ECCCCcccccCHhHh--cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc---------------cCCc-
Confidence 777777776655444 5677777777777777531 22233566667777666554211 0000
Q ss_pred hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcc
Q 039161 162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241 (333)
Q Consensus 162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 241 (333)
...++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|
T Consensus 189 --~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 189 --GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp --SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred --cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCc
Confidence 11368999999999999888889999999999999999999888888999999999999999999 788889999999
Q ss_pred ceeecccCcceecCCCCCccCCc-cccccccccCCCCCCCCCC
Q 039161 242 ALLNLSYNRLWGRIPRGNQFNTF-QNDSYIGNIRLCGEPLTVR 283 (333)
Q Consensus 242 ~~L~l~~N~l~~~~p~~~~~~~~-~~~~~~~~~~l~g~~~~~~ 283 (333)
+.|++++|++++..+....-... ........+.+.+||+.+.
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 99999999998433332111111 1122344567788887643
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=9.6e-30 Score=231.17 Aligned_cols=252 Identities=20% Similarity=0.190 Sum_probs=163.1
Q ss_pred cccEEECcCCcccc-ccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCccccc--ccCCCCCCEE
Q 039161 6 ELITLHLENNSLEG-HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCW--MGSLSELKIL 82 (333)
Q Consensus 6 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L 82 (333)
+|++|++++|.+.+ ..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+.. +..+++|++|
T Consensus 55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 134 (455)
T 3v47_A 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134 (455)
T ss_dssp TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEE
Confidence 56666666666653 33455666666666666666666656666666666666666666666533332 5566666666
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCccccc---------------------------------ChHH
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFP---------------------------------SMEA 129 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~---------------------------------~l~~ 129 (333)
++++|.+++..+..+ +..+++|++|++++|.+++..+..+.. .+++
T Consensus 135 ~L~~n~l~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 213 (455)
T 3v47_A 135 VLRDNNIKKIQPASF-FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213 (455)
T ss_dssp ECCSSBCCSCCCCGG-GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE
T ss_pred ECCCCccCccCcccc-cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccce
Confidence 666666665544331 145556666666666555443322100 1122
Q ss_pred hhhhcccCc---------------------------------------------------------------cc-ccccc
Q 039161 130 MKNVDEQGR---------------------------------------------------------------LE-YMGRA 145 (333)
Q Consensus 130 L~~l~~~~~---------------------------------------------------------------~~-~~~~~ 145 (333)
|+.+++.++ .. .....
T Consensus 214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh
Confidence 333333222 10 00000
Q ss_pred c---ccCceEEeec-----CcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCC
Q 039161 146 F---CDESITVAMK-----GHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 217 (333)
Q Consensus 146 ~---~~~~~~~~~~-----~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 217 (333)
. .......... .........+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 0 0011111111 1112223347899999999999998889999999999999999999998889999999999
Q ss_pred cEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCC
Q 039161 218 ESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 258 (333)
Q Consensus 218 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 258 (333)
++|++++|.+++..+..+..+++|+.|++++|++++.+|..
T Consensus 374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 99999999999877778899999999999999999888854
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=9.6e-30 Score=221.00 Aligned_cols=209 Identities=19% Similarity=0.244 Sum_probs=173.6
Q ss_pred CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84 (333)
Q Consensus 5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 84 (333)
++++.|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|+|++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 37999999999999 66777888999999999999999 88999999999999999999999 77889999999999999
Q ss_pred ccCcCCCCCCCCCC-------cccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecC
Q 039161 85 RSNQFDCPPCNSNI-------TFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKG 157 (333)
Q Consensus 85 ~~n~l~~~~~~~~~-------~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (333)
++|++.+..+..+. +..+++|++|++++|.++ .+|.. +..
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l~~------------------------------- 204 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS-IAN------------------------------- 204 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG-GGG-------------------------------
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh-hcC-------------------------------
Confidence 99888877776541 134899999999999988 66644 222
Q ss_pred cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccc
Q 039161 158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237 (333)
Q Consensus 158 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 237 (333)
+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..
T Consensus 205 --------l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 205 --------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp --------CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred --------CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 567788888888887 45556778888888888888888788888888888888888888887788888888
Q ss_pred cCccceeecccCcceecCCCC
Q 039161 238 VTALALLNLSYNRLWGRIPRG 258 (333)
Q Consensus 238 l~~L~~L~l~~N~l~~~~p~~ 258 (333)
+++|+.|++++|++.+.+|..
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGG
T ss_pred CCCCCEEeCCCCCchhhccHH
Confidence 888888888888888777764
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.3e-29 Score=218.35 Aligned_cols=253 Identities=19% Similarity=0.228 Sum_probs=172.0
Q ss_pred CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84 (333)
Q Consensus 5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 84 (333)
+++++|++++|.+++..+..|.++++|++|++++|++++..|.+|.++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 35666777776666666666666677777777777666666666666667777777776666 3443333 56677777
Q ss_pred ccCcCCCCCCCCCCcccCCcccEEEcCCCcccc-cCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhh
Q 039161 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTG-FLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQ 163 (333)
Q Consensus 85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (333)
++|.++..++..+ ..+++|++|++++|.++. ..+...+..+ +|+.+++..+.-. ..+.
T Consensus 131 ~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~---------------~l~~--- 189 (332)
T 2ft3_A 131 HDNRIRKVPKGVF--SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT---------------GIPK--- 189 (332)
T ss_dssp CSSCCCCCCSGGG--SSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS---------------SCCS---
T ss_pred CCCccCccCHhHh--CCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC---------------ccCc---
Confidence 7766666554444 556667777777766642 1222224444 5555555443210 0010
Q ss_pred hhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccce
Q 039161 164 NIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALAL 243 (333)
Q Consensus 164 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 243 (333)
...+.|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.
T Consensus 190 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 190 DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268 (332)
T ss_dssp SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE
T ss_pred cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE
Confidence 11368999999999999888888999999999999999999888889999999999999999999 78888999999999
Q ss_pred eecccCcceecCCCCCccCCcc-ccccccccCCCCCCCCC
Q 039161 244 LNLSYNRLWGRIPRGNQFNTFQ-NDSYIGNIRLCGEPLTV 282 (333)
Q Consensus 244 L~l~~N~l~~~~p~~~~~~~~~-~~~~~~~~~l~g~~~~~ 282 (333)
|++++|++++..+....-..+. .......+.+.|||+.+
T Consensus 269 L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp EECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred EECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 9999999984433321111111 12234556778888764
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=236.30 Aligned_cols=250 Identities=20% Similarity=0.209 Sum_probs=190.9
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
+++ +|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++
T Consensus 54 ~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 54 SFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 355 7899999999998888888999999999999999988766667888889999999999888777778888888888
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccC------------------------
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQG------------------------ 137 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~------------------------ 137 (333)
|++++|.+.+..+..+ ..+++|+.|++++|.+++ ++...+..+++|+.+++..
T Consensus 133 L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 133 LEVGDNDLVYISHRAF--SGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp EEECCTTCCEECTTSS--TTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred EECCCCccceeChhhc--cCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 8888888877776665 667777777777777763 3333344444444444333
Q ss_pred cc--cccccccc----cCceEEee---cCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCc
Q 039161 138 RL--EYMGRAFC----DESITVAM---KGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIP 208 (333)
Q Consensus 138 ~~--~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 208 (333)
+. ..+....+ .....+.. ...+......+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..|
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence 21 01111000 11111111 12222334557899999999999998888889999999999999999999999
Q ss_pred cccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecC
Q 039161 209 VSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRI 255 (333)
Q Consensus 209 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 255 (333)
..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++.+..
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 99999999999999999999877778899999999999999998543
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1e-29 Score=238.32 Aligned_cols=264 Identities=17% Similarity=0.158 Sum_probs=152.6
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|..+++|++|+++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 45666666666665555556666666666666666665555555566666666666666654444445556666666666
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-cc-------------------cc
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MG-------------------RA 145 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~-------------------~~ 145 (333)
+|.+++.++..+ ..+++|++|++++|.+++. + ...++.|+.+++..+... +. ..
T Consensus 156 ~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~-~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 156 NNNLERIEDDTF--QATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp SSCCCBCCTTTT--TTCTTCCEEECTTSCCSBC-C---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred CCcCCCCChhhh--hcCCcCcEEECcCCCCCCc-C---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 666655555444 4555666666666655532 2 122233333333322100 00 00
Q ss_pred cccCceEEeecC---cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeC
Q 039161 146 FCDESITVAMKG---HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 222 (333)
Q Consensus 146 ~~~~~~~~~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 222 (333)
.......+.... ........+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|
T Consensus 230 ~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 308 (597)
T ss_dssp CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEEC
T ss_pred cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEEC
Confidence 000000000000 011223336778888888888877777778888888888888888874 4556666788888888
Q ss_pred CCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161 223 SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 223 s~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~ 285 (333)
++|.++ .+|..+..+++|+.|++++|.+++. | +........+.+.+||+.|+|.
T Consensus 309 s~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-------~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-------LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-------CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-------hhhcCCCCEEEeeCCCCCChhH
Confidence 888887 5666677778888888888888632 2 1122334556788888888773
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=228.17 Aligned_cols=259 Identities=17% Similarity=0.228 Sum_probs=175.2
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
++++|++|++++|.+++..+..|.++++|++|++++|++++..|.+|.++++|++|++++|.+++..+..|..+++|++|
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 34579999999999998877789999999999999999998888889999999999999999987666668889999999
Q ss_pred EcccCcCCCCCC-CCCCcccCCcccEEEcCCCc-ccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcch
Q 039161 83 VLRSNQFDCPPC-NSNITFPFQALRIIDLSHTE-FTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDF 160 (333)
Q Consensus 83 ~L~~n~l~~~~~-~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (333)
++++|+++..+. ..+ ..+++|++|++++|. ++ .++...+..+++|+.+++.++...- ...
T Consensus 130 ~L~~n~l~~l~~~~~~--~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~ 191 (353)
T 2z80_A 130 NLLGNPYKTLGETSLF--SHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQS---------------YEP 191 (353)
T ss_dssp ECTTCCCSSSCSSCSC--TTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCE---------------ECT
T ss_pred ECCCCCCcccCchhhh--ccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCc---------------cCH
Confidence 999999987765 344 778999999999985 55 4444447777777777776542110 001
Q ss_pred hhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccc---cCCCCcEEeCCCCcCCC----CCCC
Q 039161 161 QLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFE---NMTALESLDLSFNKLDG----RIPE 233 (333)
Q Consensus 161 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~----~~~~ 233 (333)
.....+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+. ....++.++++++.+.+ .+|.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 1112267888888888888744444455678888888888888865433221 23344444444444443 2344
Q ss_pred CccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCC
Q 039161 234 QLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC 284 (333)
Q Consensus 234 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C 284 (333)
.+..+++|+.|++++|+++ .+|.. .|........+++.+||+.|+|
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~-~i~~~----~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLK-SVPDG----IFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHTCTTCCEEECCSSCCC-CCCTT----TTTTCTTCCEEECCSSCBCCCH
T ss_pred HHhcccCCCEEECCCCCCC-ccCHH----HHhcCCCCCEEEeeCCCccCcC
Confidence 4455556666666666665 44432 1222233344455556665555
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.9e-29 Score=212.58 Aligned_cols=229 Identities=16% Similarity=0.188 Sum_probs=195.7
Q ss_pred cEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccC
Q 039161 8 ITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSN 87 (333)
Q Consensus 8 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 87 (333)
++++.+++.++.. |..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 6789999999844 5433 478999999999999888888999999999999999999887889999999999999999
Q ss_pred c-CCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhh
Q 039161 88 Q-FDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIF 166 (333)
Q Consensus 88 ~-l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (333)
. +....+..+ ..+++|++|++++|.+++..+.. +.. +
T Consensus 91 ~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~---------------------------------------l 128 (285)
T 1ozn_A 91 AQLRSVDPATF--HGLGRLHTLHLDRCGLQELGPGL-FRG---------------------------------------L 128 (285)
T ss_dssp TTCCCCCTTTT--TTCTTCCEEECTTSCCCCCCTTT-TTT---------------------------------------C
T ss_pred CCccccCHHHh--cCCcCCCEEECCCCcCCEECHhH-hhC---------------------------------------C
Confidence 7 887777766 78999999999999998554432 221 6
Q ss_pred hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeec
Q 039161 167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 246 (333)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 246 (333)
++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 78999999999999777778999999999999999999877778999999999999999999888999999999999999
Q ss_pred ccCcceecCCCCCccCCccccccccccCCCCCCCCCCCCC
Q 039161 247 SYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCSN 286 (333)
Q Consensus 247 ~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~~ 286 (333)
++|.+++..+. .+........+.+.+||+.|+|..
T Consensus 209 ~~n~l~~~~~~-----~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 209 FANNLSALPTE-----ALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CSSCCSCCCHH-----HHTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCcCCcCCHH-----HcccCcccCEEeccCCCccCCCCc
Confidence 99999853322 234444556678999999999874
No 22
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=1e-28 Score=209.66 Aligned_cols=212 Identities=21% Similarity=0.212 Sum_probs=173.1
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
+|+++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 56678999999999988877788899999999999999987777788889999999999999987777888889999999
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCccccc-CCcccccChHHhhhhcccCcccccccccccCceEEeecCcchh
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF-LPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ 161 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (333)
++++|.+.+..+..+ ..+++|++|++++|.+++. +|.. +.
T Consensus 106 ~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~~------------------------------------ 146 (276)
T 2z62_A 106 VAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-FS------------------------------------ 146 (276)
T ss_dssp ECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-GG------------------------------------
T ss_pred ECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-hc------------------------------------
Confidence 999999888776555 7788999999999988752 3432 11
Q ss_pred hhhhhhccceEEccCcccCccchhhhhCCCCCC----EEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccc
Q 039161 162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLK----VLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237 (333)
Q Consensus 162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 237 (333)
.+++|++|++++|++++..+..+..+++|+ .|++++|.+++..+..+.. .+|+.|++++|.+++..+..+..
T Consensus 147 ---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 147 ---NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp ---GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTT
T ss_pred ---cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcc
Confidence 157888999999999877777777666666 8999999998666655544 47999999999999776677788
Q ss_pred cCccceeecccCcceecCCC
Q 039161 238 VTALALLNLSYNRLWGRIPR 257 (333)
Q Consensus 238 l~~L~~L~l~~N~l~~~~p~ 257 (333)
+++|+.|++++|++++..|.
T Consensus 223 l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCSCCEEECCSSCBCCCTTT
T ss_pred cccccEEEccCCcccccCCc
Confidence 99999999999999876654
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1e-28 Score=232.34 Aligned_cols=252 Identities=15% Similarity=0.158 Sum_probs=158.5
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
.+|+.+++|++++|.+++..|..|.++++|++|++++|++++..|.+|.++++|++|+|++|.+++..|..|..+++|++
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 35667888888888888888888888888888888888888777888888888888888888888777778888888888
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-cccc----------------
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGR---------------- 144 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~---------------- 144 (333)
|++++|.+++..+..+ ..+++|++|++++|.+++..... +..+++|+.+++.++.. .+..
T Consensus 110 L~L~~n~i~~l~~~~~--~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPL--HNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp EECTTSCCSCGGGSCC--TTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred eeccccCcccCCcchh--ccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 8888888877655555 66777777777777777532222 22366666666655421 0100
Q ss_pred ----------ccccCce--EEeec-------------------------------Ccchhhhhhh--hccceEEccCccc
Q 039161 145 ----------AFCDESI--TVAMK-------------------------------GHDFQLQNIF--VMFRAMDFSSNRF 179 (333)
Q Consensus 145 ----------~~~~~~~--~~~~~-------------------------------~~~~~~~~~~--~~L~~L~ls~n~l 179 (333)
..+.... ..... .........+ ..|+.|++++|.+
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 0000000 00000 0000000001 1456666666666
Q ss_pred CccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCC
Q 039161 180 HGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 257 (333)
Q Consensus 180 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 257 (333)
++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred CccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 6555555666666666666666666 4555566666666666666666655555556666666666666665554443
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.4e-29 Score=244.63 Aligned_cols=263 Identities=18% Similarity=0.223 Sum_probs=179.3
Q ss_pred CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84 (333)
Q Consensus 5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 84 (333)
++|++|++++|.+.+..+..|..+++|++|++++|++++..|..|.++++|++|+|++|.+++..+..|..+++|++|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 47999999999999888999999999999999999999888999999999999999999999888889999999999999
Q ss_pred ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-cccccccc---------------
Q 039161 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCD--------------- 148 (333)
Q Consensus 85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~--------------- 148 (333)
++|.+....+..+ ..+++|++|++++|.+++. + .+++|+.+.+.++.. .++.....
T Consensus 346 ~~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~i-~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~ 417 (844)
T 3j0a_A 346 QKNHIAIIQDQTF--KFLEKLQTLDLRDNALTTI-H-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD 417 (844)
T ss_dssp CSCCCCCCCSSCS--CSCCCCCEEEEETCCSCCC-S-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSST
T ss_pred CCCCCCccChhhh--cCCCCCCEEECCCCCCCcc-c-----CCCCcchhccCCCCcccccccccccceeecccCccccCc
Confidence 9999988887766 7789999999999988742 2 134445555443321 11110000
Q ss_pred -----------CceEEeecCcc----hhhhhhhhccceEEccCcccC-----ccchhhhhCCCCCCEEEccCCcCCCCCc
Q 039161 149 -----------ESITVAMKGHD----FQLQNIFVMFRAMDFSSNRFH-----GEISEVLGNFKSLKVLNLSHNSLTGNIP 208 (333)
Q Consensus 149 -----------~~~~~~~~~~~----~~~~~~~~~L~~L~ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 208 (333)
....+..+... ......+++|+.|++++|.++ +..+..|..+++|+.|+|++|.+++..|
T Consensus 418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 497 (844)
T 3j0a_A 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497 (844)
T ss_dssp THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence 00000000000 000111344555555555543 2233446666777777777777777777
Q ss_pred cccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161 209 VSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 209 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~ 285 (333)
..|.++++|+.|+|++|.+++..+..+. ++|+.|++++|++++..|... ..+ ....+.|||+.|+|.
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~~L------~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--VSL------SVLDITHNKFICECE 564 (844)
T ss_dssp TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--SSC------CEEEEEEECCCCSSS
T ss_pred hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh--CCc------CEEEecCCCcccccc
Confidence 7777777777777777777765555554 677777777777776666532 222 233455566666664
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=7.6e-29 Score=236.16 Aligned_cols=273 Identities=17% Similarity=0.186 Sum_probs=163.0
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcC--CCChhhcCC--CCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEG--PLPRSLAKY--IKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
+|++|++++|.+++..+..|.++++|++|++++|.+.. ..+..|..+ ++|+.|++++|++++..|.+|..+++|++
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 68888888888887777778777777777777765321 112222222 35666666666666555666666677777
Q ss_pred EEcccCcCCCCCC-CCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc----ccccc--c--cCceE
Q 039161 82 LVLRSNQFDCPPC-NSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY----MGRAF--C--DESIT 152 (333)
Q Consensus 82 L~L~~n~l~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~----~~~~~--~--~~~~~ 152 (333)
|++++|.+.+..+ ..+ ..+++|++|++++|.+++..+ ..+..++.|+.+++.++... ++... . .....
T Consensus 410 L~L~~N~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEW--RGLENIFEIYLSYNKYLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp EECCSSCCEEECCSGGG--TTCTTCCEEECCSCSEEECCT-TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred EeCCCCcCccccCcccc--cCcccccEEecCCCCcceeCh-hhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence 7777776654332 223 456666666666666653333 23455555555555443211 00000 0 00000
Q ss_pred Ee---ecCcchhhhhhhhccceEEccCcccCccch--------hhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEe
Q 039161 153 VA---MKGHDFQLQNIFVMFRAMDFSSNRFHGEIS--------EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD 221 (333)
Q Consensus 153 ~~---~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 221 (333)
+. ...........+++|++|++++|++++..+ ..+..+++|++|++++|+++...+..|.++++|+.|+
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence 00 011111222336677777777777764321 2356777788888888877755555677778888888
Q ss_pred CCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCcc-ccccccccCCCCCCCCCCCCC
Q 039161 222 LSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQ-NDSYIGNIRLCGEPLTVRCSN 286 (333)
Q Consensus 222 Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~-~~~~~~~~~l~g~~~~~~C~~ 286 (333)
|++|.+++..+..|..+++|+.|++++|++++..|. .+. .......+.+.|||+.|+|..
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK-----VFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH-----HHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh-----HhcccccccCEEEccCCCcccCCcc
Confidence 888888766666677778888888888887754332 122 223345678899999999974
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.5e-28 Score=231.69 Aligned_cols=262 Identities=17% Similarity=0.234 Sum_probs=185.4
Q ss_pred cccEEECcCCccccccch--hhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCC-CCEE
Q 039161 6 ELITLHLENNSLEGHIHN--TFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSE-LKIL 82 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L 82 (333)
+|++|++++|.++ .+|. .|+++++|++|++++|.++|.+| .|..+++|++|++++|.++ .+|..+..+++ |++|
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 7888888888888 6666 78888888888888888887777 7777888888888888887 66777777777 8888
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCccccc-------ChHHhhhhcccCccc-ccccccc---cCce
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFP-------SMEAMKNVDEQGRLE-YMGRAFC---DESI 151 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-------~l~~L~~l~~~~~~~-~~~~~~~---~~~~ 151 (333)
++++|.++.. +..+....+++|++|++++|.+++..|.. +. .+.+|+.+++.++.. .++...+ ....
T Consensus 383 ~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 383 SFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp ECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred EccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 8888887744 33432233446777777777777666544 22 444666666655431 1111111 0000
Q ss_pred EEee--c---Ccchhhh-------hhhhccceEEccCcccCccchhhhh--CCCCCCEEEccCCcCCCCCccccccCCCC
Q 039161 152 TVAM--K---GHDFQLQ-------NIFVMFRAMDFSSNRFHGEISEVLG--NFKSLKVLNLSHNSLTGNIPVSFENMTAL 217 (333)
Q Consensus 152 ~~~~--~---~~~~~~~-------~~~~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 217 (333)
.... + ..+.... ..+++|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|
T Consensus 461 ~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L 538 (636)
T 4eco_A 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538 (636)
T ss_dssp EEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC
T ss_pred EEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC
Confidence 1111 0 0111111 11338999999999999 6777776 89999999999999997 88889999999
Q ss_pred cEEeC------CCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCC
Q 039161 218 ESLDL------SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTV 282 (333)
Q Consensus 218 ~~L~L------s~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~ 282 (333)
+.|+| ++|.+.+.+|..+..+++|+.|++++|++ +.+|.... .....+++.+||+.+
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-------~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-------PNISVLDIKDNPNIS 601 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-------TTCCEEECCSCTTCE
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-------CcCCEEECcCCCCcc
Confidence 99999 56778888999999999999999999999 68887632 234556777777664
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.8e-28 Score=217.55 Aligned_cols=206 Identities=18% Similarity=0.211 Sum_probs=177.2
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
+++ +|++|+|++|.+++..+..|.++++|++|+|++|+++...+..|..+++|++|+|++|.++...+..|..+++|++
T Consensus 86 ~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 86 HLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp SCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCC-CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence 456 8999999999999999999999999999999999999777778999999999999999999777778999999999
Q ss_pred EEcccC-cCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccCceEEeecCcc
Q 039161 82 LVLRSN-QFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDESITVAMKGHD 159 (333)
Q Consensus 82 L~L~~n-~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 159 (333)
|++++| .+....+..+ ..+++|++|++++|.++ .+|. +..+++|+.|++.+|.. .+.
T Consensus 165 L~l~~~~~l~~i~~~~~--~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~---------------- 223 (440)
T 3zyj_A 165 LDLGELKRLSYISEGAF--EGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIR---------------- 223 (440)
T ss_dssp EECCCCTTCCEECTTTT--TTCSSCCEEECTTSCCS-SCCC--CTTCSSCCEEECTTSCCCEEC----------------
T ss_pred eCCCCCCCcceeCcchh--hcccccCeecCCCCcCc-cccc--cCCCcccCEEECCCCccCccC----------------
Confidence 999984 4555555555 78999999999999998 5553 67788888888877631 111
Q ss_pred hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCC
Q 039161 160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 229 (333)
Q Consensus 160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 229 (333)
......+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 1112237899999999999998889999999999999999999998888889999999999999999874
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.5e-28 Score=218.06 Aligned_cols=207 Identities=17% Similarity=0.171 Sum_probs=177.3
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
+++ +|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.++...+..|..+++|++
T Consensus 97 ~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 97 HLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175 (452)
T ss_dssp TCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence 456 8999999999999999999999999999999999999877788999999999999999999777778999999999
Q ss_pred EEccc-CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcch
Q 039161 82 LVLRS-NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDF 160 (333)
Q Consensus 82 L~L~~-n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (333)
|++++ +.+....+..+ ..+++|++|++++|.+++ +|. +..+++|+.+++.+|... ....
T Consensus 176 L~l~~~~~l~~i~~~~~--~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~Ls~N~l~---------------~~~~ 235 (452)
T 3zyi_A 176 LDLGELKKLEYISEGAF--EGLFNLKYLNLGMCNIKD-MPN--LTPLVGLEELEMSGNHFP---------------EIRP 235 (452)
T ss_dssp EECCCCTTCCEECTTTT--TTCTTCCEEECTTSCCSS-CCC--CTTCTTCCEEECTTSCCS---------------EECG
T ss_pred EeCCCCCCccccChhhc--cCCCCCCEEECCCCcccc-ccc--ccccccccEEECcCCcCc---------------ccCc
Confidence 99998 45555555555 789999999999999985 443 677888888888776311 0111
Q ss_pred hhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCC
Q 039161 161 QLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 229 (333)
Q Consensus 161 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 229 (333)
.....+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+..
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 122337899999999999998889999999999999999999998888889999999999999999874
No 29
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.6e-28 Score=211.96 Aligned_cols=203 Identities=21% Similarity=0.252 Sum_probs=182.4
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccC-------
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGS------- 75 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------- 75 (333)
++ +|++|+|++|.++ .+|..|.++++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|..+..
T Consensus 103 l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 103 LS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred CC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 45 8999999999999 78888999999999999999999 78999999999999999999888888877654
Q ss_pred --CCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEE
Q 039161 76 --LSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITV 153 (333)
Q Consensus 76 --l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 153 (333)
+++|++|++++|+++..+ ..+ ..+++|++|++++|.+++ +|.. +.
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp-~~l--~~l~~L~~L~L~~N~l~~-l~~~-l~---------------------------- 226 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLP-ASI--ANLQNLKSLKIRNSPLSA-LGPA-IH---------------------------- 226 (328)
T ss_dssp EESTTCCEEEEEEECCCCCC-GGG--GGCTTCCEEEEESSCCCC-CCGG-GG----------------------------
T ss_pred ccCCCCCEEECcCCCcCcch-Hhh--cCCCCCCEEEccCCCCCc-Cchh-hc----------------------------
Confidence 999999999999998543 344 789999999999999984 4432 11
Q ss_pred eecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCC
Q 039161 154 AMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233 (333)
Q Consensus 154 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 233 (333)
.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|.
T Consensus 227 -----------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 227 -----------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp -----------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred -----------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 167899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccceeecccCcce
Q 039161 234 QLLSVTALALLNLSYNRLW 252 (333)
Q Consensus 234 ~~~~l~~L~~L~l~~N~l~ 252 (333)
.+..+++++.+++..+.+.
T Consensus 296 ~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 296 LIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGGSCTTCEEECCGGGSC
T ss_pred HHhhccCceEEeCCHHHHH
Confidence 9999999999999988774
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=9.6e-28 Score=224.02 Aligned_cols=112 Identities=17% Similarity=0.125 Sum_probs=65.2
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
+|+++++|++++|.+++..+.+|.++++|++|++++|++++..+.+|.++++|++|++++|.+++..+.+|..+++|++|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 34456666666666666666666666666666666666665555666666666666666666665555555555666666
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCccc
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFT 116 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 116 (333)
++++|++++..+..+ ..+++|++|++++|.++
T Consensus 106 ~L~~n~l~~l~~~~~--~~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 106 VAVETNLASLENFPI--GHLKTLKELNVAHNLIQ 137 (570)
T ss_dssp ECTTSCCCCSTTCSC--TTCTTCCEEECCSSCCC
T ss_pred cccccccccCCCccc--cccccccEEecCCCccc
Confidence 666555554443322 34444444444444443
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.9e-28 Score=208.53 Aligned_cols=237 Identities=16% Similarity=0.162 Sum_probs=190.1
Q ss_pred CCcCcccEEECcCCccccc--cchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCccc-ccccCCCC
Q 039161 2 SFSTELITLHLENNSLEGH--IHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFP-CWMGSLSE 78 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~ 78 (333)
+++ +|++|+|++|.++.. .+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++
T Consensus 50 ~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (306)
T 2z66_A 50 KLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127 (306)
T ss_dssp TCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred ccc-cCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence 456 899999999999843 3677888999999999999998 577779999999999999999986654 57889999
Q ss_pred CCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCc
Q 039161 79 LKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGH 158 (333)
Q Consensus 79 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (333)
|++|++++|.+.+..+..+ ..+++|++|++++|.+++......+..+++|+.+++.++...- .
T Consensus 128 L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~---------------~ 190 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ---------------L 190 (306)
T ss_dssp CCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE---------------E
T ss_pred CCEEECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC---------------c
Confidence 9999999999988877766 7789999999999999863333447888999999988763110 0
Q ss_pred chhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccC-CCCcEEeCCCCcCCCCCC--CCc
Q 039161 159 DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENM-TALESLDLSFNKLDGRIP--EQL 235 (333)
Q Consensus 159 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~ 235 (333)
.......+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|.+++... ...
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~ 270 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 270 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHH
T ss_pred CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHH
Confidence 11112236899999999999998777789999999999999999999999999988 499999999999986422 122
Q ss_pred cccCccceeecccCcceecCCC
Q 039161 236 LSVTALALLNLSYNRLWGRIPR 257 (333)
Q Consensus 236 ~~l~~L~~L~l~~N~l~~~~p~ 257 (333)
..+...+.+.+..+.+.+..|.
T Consensus 271 ~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 271 QWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp HHHHHTGGGBSCGGGCBEEESG
T ss_pred HHHHhhhhhhccccccccCCch
Confidence 3344555666667777766665
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.3e-27 Score=222.67 Aligned_cols=109 Identities=25% Similarity=0.341 Sum_probs=87.4
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
+|+++++|++++|.+++..+..|.++++|++|++++|++++..|.+|.++++|++|++++|.++ .+|.. .+++|++|
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L 126 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHL 126 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEE
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEE
Confidence 4567899999999998888888999999999999999998888888888999999999988888 45544 67888888
Q ss_pred EcccCcCCCCC-CCCCCcccCCcccEEEcCCCccc
Q 039161 83 VLRSNQFDCPP-CNSNITFPFQALRIIDLSHTEFT 116 (333)
Q Consensus 83 ~L~~n~l~~~~-~~~~~~~~l~~L~~L~ls~n~l~ 116 (333)
++++|++++.. +..+ ..+++|++|++++|.++
T Consensus 127 ~Ls~N~l~~l~~p~~~--~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEF--GNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp ECCSSCCSBCCCCGGG--GGCTTCCEEEEECSBCC
T ss_pred ECCCCCccccCchHhh--cccCcccEEecCCCccc
Confidence 88888887654 3344 66777777777777665
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=4.7e-28 Score=235.56 Aligned_cols=252 Identities=19% Similarity=0.178 Sum_probs=172.8
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCC-ChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPL-PRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
+|+++++|+|++|.+++..+..|.++++|++|++++|...+.+ |.+|.++++|++|+|++|.+++..|.+|..+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4568889999999998888888888888888888888554444 777888888888888888888777888888888888
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-cccccc--------------
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAF-------------- 146 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~-------------- 146 (333)
|+|++|.+++..+....+..+++|++|++++|.+++..+...+..+++|+.|++.++.. .+....
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 88888888775444422367888888888888887665544567777777777665421 000000
Q ss_pred -------------------ccC--ceEEeecCc--c----hh------------------------------------hh
Q 039161 147 -------------------CDE--SITVAMKGH--D----FQ------------------------------------LQ 163 (333)
Q Consensus 147 -------------------~~~--~~~~~~~~~--~----~~------------------------------------~~ 163 (333)
+.. ......... . .. +.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 000 000000000 0 00 00
Q ss_pred h-hhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccc
Q 039161 164 N-IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242 (333)
Q Consensus 164 ~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 242 (333)
. ..++|+.|++++|.+.+..+..+..+++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+..+..+++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 0 025677777777777766677777777777777777777777777777777777777777777766677777777777
Q ss_pred eeecccCcceec
Q 039161 243 LLNLSYNRLWGR 254 (333)
Q Consensus 243 ~L~l~~N~l~~~ 254 (333)
.|++++|.+++.
T Consensus 342 ~L~L~~N~i~~~ 353 (844)
T 3j0a_A 342 YIDLQKNHIAII 353 (844)
T ss_dssp EEECCSCCCCCC
T ss_pred EEECCCCCCCcc
Confidence 777777777543
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=221.02 Aligned_cols=107 Identities=22% Similarity=0.274 Sum_probs=71.1
Q ss_pred cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161 4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV 83 (333)
Q Consensus 4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 83 (333)
++++++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|+|++|+++ .+|.. .+++|++|+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 346777777777777777777777777777777777777666777777777777777777776 34443 566677777
Q ss_pred cccCcCCCC-CCCCCCcccCCcccEEEcCCCcc
Q 039161 84 LRSNQFDCP-PCNSNITFPFQALRIIDLSHTEF 115 (333)
Q Consensus 84 L~~n~l~~~-~~~~~~~~~l~~L~~L~ls~n~l 115 (333)
+++|.+++. .|..+ ..+++|++|++++|.+
T Consensus 97 L~~N~l~~~~~p~~~--~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 97 LSFNAFDALPICKEF--GNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CCSSCCSSCCCCGGG--GGCTTCCEEEEEESSC
T ss_pred ccCCccccccchhhh--ccCCcceEEEecCccc
Confidence 777666653 23333 4455555555555544
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=3.2e-27 Score=224.98 Aligned_cols=248 Identities=20% Similarity=0.163 Sum_probs=174.2
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
+|+++++|+|++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|+|++|.+++..+..|..+++|++|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 55689999999999998888889999999999999999998889999999999999999999996666679999999999
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccc-----cCceEEeec
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFC-----DESITVAMK 156 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~-----~~~~~~~~~ 156 (333)
++++|.+++.++..+ ..+++|++|++++|.+++..+.. +..+++|+.+++.++.. .+....+ .........
T Consensus 103 ~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPF--VKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp ECCSSCCCCCCSCTT--TTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred ECCCCccCccChhHc--cccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 999999988887776 78899999999999998665543 67788888888876531 1111000 000000000
Q ss_pred -----Ccchhhhh---------------------------hhhccceEEccCcccCccchhhhhCCCC--CCEEEccCCc
Q 039161 157 -----GHDFQLQN---------------------------IFVMFRAMDFSSNRFHGEISEVLGNFKS--LKVLNLSHNS 202 (333)
Q Consensus 157 -----~~~~~~~~---------------------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~--L~~L~Ls~n~ 202 (333)
........ ..+.|+.|++++|.+++..|..+..++. |++|++++|.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 00000000 0145666666666666555666655543 6666666666
Q ss_pred CCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCccee
Q 039161 203 LTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 253 (333)
Q Consensus 203 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 253 (333)
+++..+..|+.+++|+.|++++|.+.+..|..+..+++|+.|++++|...+
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 666666666666666666666666666666666666666666666655443
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=2.1e-28 Score=230.08 Aligned_cols=254 Identities=18% Similarity=0.169 Sum_probs=170.2
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCCh--------------------hhcCCCCCcEEEccCCcC
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPR--------------------SLAKYIKLEVVNVENNMI 65 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~--------------------~~~~l~~L~~L~L~~n~l 65 (333)
+|+.|++++|.++. .| .+..+++|++|++++|.+ +.+|. .+..+++|++|++++|.+
T Consensus 286 ~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 286 NVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp TCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCE
T ss_pred CCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCcc
Confidence 45555555555542 22 444445555555555554 23331 334555555666665555
Q ss_pred CCc--ccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccc
Q 039161 66 SDS--FPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMG 143 (333)
Q Consensus 66 ~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~ 143 (333)
++. .+..+..+++|++|++++|.+.+.+ ..+ ..+++|++|++++|.+.+..+...+..+++|+.+++..+...
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-- 437 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK-- 437 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCC--TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE--
T ss_pred CCCcchhhhhccCCcccEeECCCCccccch-hhc--cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC--
Confidence 543 2455556666666666666655543 223 456666667776666665555344566666666666554311
Q ss_pred cccccCceEEeecCcchhhhhhhhccceEEccCcccCc-cchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeC
Q 039161 144 RAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG-EISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 222 (333)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 222 (333)
.........+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 438 -------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 438 -------------IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp -------------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred -------------ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 0111122337889999999999987 47888999999999999999999888999999999999999
Q ss_pred CCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccc-cccccCCCCCCCCCCCCC
Q 039161 223 SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDS-YIGNIRLCGEPLTVRCSN 286 (333)
Q Consensus 223 s~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~-~~~~~~l~g~~~~~~C~~ 286 (333)
++|.+++..|..+..+++|+.|++++|+++ .+|.. +.... ....+.+.+||+.|+|..
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~-----~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI-----LQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC-----GGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh-----HhhhcccCcEEEccCCCcccCCcc
Confidence 999999888999999999999999999998 66654 22222 245678899999999974
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=8.6e-29 Score=233.43 Aligned_cols=249 Identities=20% Similarity=0.257 Sum_probs=181.9
Q ss_pred CCcCcccEEECcCCccccc-----------------cchhhh--CCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccC
Q 039161 2 SFSTELITLHLENNSLEGH-----------------IHNTFA--NASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 62 (333)
+++ +|++|+|++|.+++. +|..++ ++++|++|++++|.+.+.+|..|.++++|++|++++
T Consensus 204 ~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 204 RLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred ccc-CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 455 799999999999985 888888 999999999999999999999999999999999999
Q ss_pred Cc-CCC-cccccccCC------CCCCEEEcccCcCCCCCCC--CCCcccCCcccEEEcCCCcccccCCcccccChHHhhh
Q 039161 63 NM-ISD-SFPCWMGSL------SELKILVLRSNQFDCPPCN--SNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKN 132 (333)
Q Consensus 63 n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~ 132 (333)
|+ +++ .+|..++.+ ++|++|++++|+++.. |. .+ ..+++|++|++++|.++|.+| .+..+++|+.
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i-p~~~~l--~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~ 357 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF-PVETSL--QKMKKLGMLECLYNQLEGKLP--AFGSEIKLAS 357 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC-CCHHHH--TTCTTCCEEECCSCCCEEECC--CCEEEEEESE
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc-Cchhhh--ccCCCCCEEeCcCCcCccchh--hhCCCCCCCE
Confidence 98 887 788877776 8999999999999844 43 34 678899999999999998888 4778888888
Q ss_pred hcccCcccc-cccccc-----cCceEEeecC---cchhhhh-hhhccceEEccCcccCccchhhhh-------CCCCCCE
Q 039161 133 VDEQGRLEY-MGRAFC-----DESITVAMKG---HDFQLQN-IFVMFRAMDFSSNRFHGEISEVLG-------NFKSLKV 195 (333)
Q Consensus 133 l~~~~~~~~-~~~~~~-----~~~~~~~~~~---~~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~~-------~l~~L~~ 195 (333)
+++.++... ++.... .....+..+. .+..+.. .+++|+.|++++|.+++..|..+. .+++|++
T Consensus 358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp EECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred EECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 888776422 111110 0011111111 1111111 023678888888888777777776 6677888
Q ss_pred EEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCC-CccccC-------ccceeecccCcceecCCCC
Q 039161 196 LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE-QLLSVT-------ALALLNLSYNRLWGRIPRG 258 (333)
Q Consensus 196 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~-------~L~~L~l~~N~l~~~~p~~ 258 (333)
|++++|.++...+..+..+++|+.|+|++|.++ .+|. .+.... +|+.|++++|+++ .+|..
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 888888888544445566788888888888888 4444 333222 7888888888887 66654
No 38
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=7.6e-27 Score=197.39 Aligned_cols=207 Identities=21% Similarity=0.274 Sum_probs=175.3
Q ss_pred CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84 (333)
Q Consensus 5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 84 (333)
...++++++++.++. +|..+. +++++|++++|++++..+.+|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 357899999999984 454443 67999999999999777778999999999999999999766667788999999999
Q ss_pred ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhh
Q 039161 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQN 164 (333)
Q Consensus 85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (333)
++|++++.++..+ ..+++|++|++++|.+++..+.. +..
T Consensus 93 ~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~-------------------------------------- 131 (270)
T 2o6q_A 93 TDNKLQALPIGVF--DQLVNLAELRLDRNQLKSLPPRV-FDS-------------------------------------- 131 (270)
T ss_dssp CSSCCCCCCTTTT--TTCSSCCEEECCSSCCCCCCTTT-TTT--------------------------------------
T ss_pred CCCcCCcCCHhHc--ccccCCCEEECCCCccCeeCHHH-hCc--------------------------------------
Confidence 9999998887666 77899999999999988543322 221
Q ss_pred hhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcccee
Q 039161 165 IFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244 (333)
Q Consensus 165 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 244 (333)
+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 132 -l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 132 -LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 6788999999999997777778999999999999999998877889999999999999999997777778889999999
Q ss_pred ecccCcceecCC
Q 039161 245 NLSYNRLWGRIP 256 (333)
Q Consensus 245 ~l~~N~l~~~~p 256 (333)
++++|++.+..+
T Consensus 211 ~l~~N~~~c~c~ 222 (270)
T 2o6q_A 211 QLQENPWDCTCN 222 (270)
T ss_dssp ECCSSCBCCSSS
T ss_pred EecCCCeeCCCc
Confidence 999999975443
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.8e-27 Score=211.94 Aligned_cols=239 Identities=18% Similarity=0.088 Sum_probs=172.3
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
.++ +|++|++++|.+++..|..|.++++|++|++++|.++...+..|.++++|++|++++|.+++..+..+..+++|++
T Consensus 91 ~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 91 YAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169 (390)
T ss_dssp TCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCE
T ss_pred CCC-CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCE
Confidence 345 8999999999999999999999999999999999999665566799999999999999999888888999999999
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccc------------------cCCcccccChHHhhhhcccCcccccc
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTG------------------FLPRRIFPSMEAMKNVDEQGRLEYMG 143 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~------------------~~~~~~~~~l~~L~~l~~~~~~~~~~ 143 (333)
|++++|.+++... ..+++|+.+++++|.+++ .+|.. ..++|+.+++.++...-.
T Consensus 170 L~l~~n~l~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~ 241 (390)
T 3o6n_A 170 LQLSSNRLTHVDL-----SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT 241 (390)
T ss_dssp EECCSSCCSBCCG-----GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC
T ss_pred EECCCCcCCcccc-----ccccccceeecccccccccCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc
Confidence 9999999886542 233444444433333321 11111 112333344333321100
Q ss_pred c----ccccCceEEeec---CcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCC
Q 039161 144 R----AFCDESITVAMK---GHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA 216 (333)
Q Consensus 144 ~----~~~~~~~~~~~~---~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 216 (333)
. ........+..+ .........+++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|..+..+++
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~ 319 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 319 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCc
Confidence 0 000000011111 111222334789999999999998 45666778999999999999999 56777888999
Q ss_pred CcEEeCCCCcCCCCCCCCccccCccceeecccCcceec
Q 039161 217 LESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGR 254 (333)
Q Consensus 217 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 254 (333)
|+.|++++|.++.. + +..+++|+.|++++|++.+.
T Consensus 320 L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 320 LENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 99999999999854 3 67788999999999999854
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.5e-27 Score=221.74 Aligned_cols=117 Identities=23% Similarity=0.338 Sum_probs=70.6
Q ss_pred hhccceEEccCcccCccch--hhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCC---------
Q 039161 166 FVMFRAMDFSSNRFHGEIS--EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ--------- 234 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------- 234 (333)
+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++. +|..
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~ 437 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLD 437 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEE
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhcCCceEEE
Confidence 4677788888887774432 45777888888888888877 456666666666666666665542 1111
Q ss_pred ---------ccccCccceeecccCcceecCCCCCccC------------------CccccccccccCCCCCCCCCCCC
Q 039161 235 ---------LLSVTALALLNLSYNRLWGRIPRGNQFN------------------TFQNDSYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 235 ---------~~~l~~L~~L~l~~N~l~~~~p~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~C~ 285 (333)
...+++|+.|++++|+++ .+|....+. .+........+++.+||+.|+|+
T Consensus 438 Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 438 VSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCCChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 113455566666666655 444321111 22333344566888999998886
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1e-27 Score=224.68 Aligned_cols=263 Identities=18% Similarity=0.097 Sum_probs=186.0
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
.++ +|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++
T Consensus 97 ~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 175 (597)
T 3oja_B 97 YAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175 (597)
T ss_dssp TCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred CCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence 455 8999999999999999999999999999999999999766777899999999999999999888889999999999
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCccccc------------------CCcccccChHHhhhhcccCcccccc
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF------------------LPRRIFPSMEAMKNVDEQGRLEYMG 143 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~------------------~~~~~~~~l~~L~~l~~~~~~~~~~ 143 (333)
|++++|.+++... ..+++|+.|++++|.+++. ++... ..+|+.+++.++...-.
T Consensus 176 L~L~~N~l~~~~~-----~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~ 247 (597)
T 3oja_B 176 LQLSSNRLTHVDL-----SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT 247 (597)
T ss_dssp EECTTSCCSBCCG-----GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC
T ss_pred EECcCCCCCCcCh-----hhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC
Confidence 9999999987642 2334444444444433321 11110 11233333333221100
Q ss_pred ----cccccCceEEeec---CcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCC
Q 039161 144 ----RAFCDESITVAMK---GHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA 216 (333)
Q Consensus 144 ----~~~~~~~~~~~~~---~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 216 (333)
.........+..+ +........+++|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~ 325 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 325 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCC
Confidence 0000000011111 1112223347899999999999995 5666778999999999999999 67778899999
Q ss_pred CcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCC
Q 039161 217 LESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEP 279 (333)
Q Consensus 217 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~ 279 (333)
|+.|+|++|.+++. + +..+++|+.|++++|++.+..+.. .+..+....+.++...|+.+
T Consensus 326 L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 326 LENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred CCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence 99999999999854 3 567889999999999998654322 23344444555666677653
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=4.5e-27 Score=204.64 Aligned_cols=225 Identities=19% Similarity=0.227 Sum_probs=186.5
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
+++ +|++|+|++|.+++..|..|.++++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++
T Consensus 74 ~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 74 NLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred cCC-CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccE
Confidence 456 8999999999999888999999999999999999998 5665543 79999999999999887788999999999
Q ss_pred EEcccCcCCC--CCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161 82 LVLRSNQFDC--PPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD 159 (333)
Q Consensus 82 L~L~~n~l~~--~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (333)
|++++|.+.. ..+..+ ..+++|++|++++|.++ .+|..++ ++|+.+++.++... ...
T Consensus 150 L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~---------------~~~ 208 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAF--QGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKIT---------------KVD 208 (330)
T ss_dssp EECCSSCCCGGGBCTTGG--GGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEECTTSCCC---------------EEC
T ss_pred EECCCCcCCccCcChhhc--cCCCCcCEEECCCCccc-cCCcccc---ccCCEEECCCCcCC---------------ccC
Confidence 9999999864 444444 78999999999999998 4665543 57777777665311 001
Q ss_pred hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccc--
Q 039161 160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS-- 237 (333)
Q Consensus 160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-- 237 (333)
......+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~ 287 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc
Confidence 112223789999999999999888888999999999999999999 77888999999999999999999776666643
Q ss_pred ----cCccceeecccCcce
Q 039161 238 ----VTALALLNLSYNRLW 252 (333)
Q Consensus 238 ----l~~L~~L~l~~N~l~ 252 (333)
...++.+++++|++.
T Consensus 288 ~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCTTSCCCSEEECCSSSSC
T ss_pred cccccccccceEeecCccc
Confidence 367889999999986
No 43
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=8.2e-27 Score=197.87 Aligned_cols=226 Identities=21% Similarity=0.259 Sum_probs=185.2
Q ss_pred EEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCc
Q 039161 9 TLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQ 88 (333)
Q Consensus 9 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 88 (333)
+.+-.+..++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4556666666 4454443 579999999999998777789999999999999999997777789999999999999999
Q ss_pred CCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhc
Q 039161 89 FDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVM 168 (333)
Q Consensus 89 l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (333)
+++..+..+ ..+++|++|++++|.+++..+.. +.. +++
T Consensus 88 l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~---------------------------------------l~~ 125 (276)
T 2z62_A 88 IQSLALGAF--SGLSSLQKLVAVETNLASLENFP-IGH---------------------------------------LKT 125 (276)
T ss_dssp CCEECTTTT--TTCTTCCEEECTTSCCCCSTTCC-CTT---------------------------------------CTT
T ss_pred cCccChhhh--cCCccccEEECCCCCccccCchh-ccc---------------------------------------CCC
Confidence 998887776 78999999999999988543322 111 678
Q ss_pred cceEEccCcccCcc-chhhhhCCCCCCEEEccCCcCCCCCccccccCCCCc----EEeCCCCcCCCCCCCCccccCccce
Q 039161 169 FRAMDFSSNRFHGE-ISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE----SLDLSFNKLDGRIPEQLLSVTALAL 243 (333)
Q Consensus 169 L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~ 243 (333)
|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ +|++++|.+++..+..+.. .+|+.
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~ 204 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKE 204 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEE
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccE
Confidence 99999999999864 588999999999999999999988888888777777 8999999999665655544 48999
Q ss_pred eecccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161 244 LNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 244 L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~ 285 (333)
|++++|.+++ +|.. .|........+.+.+||+.|+|.
T Consensus 205 L~L~~n~l~~-~~~~----~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 205 LALDTNQLKS-VPDG----IFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECCSSCCSC-CCTT----TTTTCCSCCEEECCSSCBCCCTT
T ss_pred EECCCCceee-cCHh----HhcccccccEEEccCCcccccCC
Confidence 9999999984 4433 34444555677899999999996
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=9.1e-28 Score=210.98 Aligned_cols=236 Identities=15% Similarity=0.143 Sum_probs=192.3
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCccc-ccccCCCCCC
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFP-CWMGSLSELK 80 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 80 (333)
+++ +|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+ ..+..+++|+
T Consensus 74 ~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 74 RCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred cCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 456 89999999999999889999999999999999999997666669999999999999999996444 4788999999
Q ss_pred EEEcccC-cCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161 81 ILVLRSN-QFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD 159 (333)
Q Consensus 81 ~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (333)
+|++++| .+....+..+ ..+++|++|++++|.+++..|.. +..+++|+.+++..+.. ....
T Consensus 153 ~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l---------------~~~~ 214 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDF--AGLTFLEELEIDASDLQSYEPKS-LKSIQNVSHLILHMKQH---------------ILLL 214 (353)
T ss_dssp EEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSCS---------------TTHH
T ss_pred EEECCCCccccccCHHHc--cCCCCCCEEECCCCCcCccCHHH-HhccccCCeecCCCCcc---------------ccch
Confidence 9999999 4776666666 78899999999999999766654 77788888888766531 1112
Q ss_pred hhhhhhhhccceEEccCcccCccchhhh---hCCCCCCEEEccCCcCCC----CCccccccCCCCcEEeCCCCcCCCCCC
Q 039161 160 FQLQNIFVMFRAMDFSSNRFHGEISEVL---GNFKSLKVLNLSHNSLTG----NIPVSFENMTALESLDLSFNKLDGRIP 232 (333)
Q Consensus 160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 232 (333)
......+++|+.|++++|.+++..+..+ ...+.++.++++++.+++ .+|..+..+++|+.|++++|.++...+
T Consensus 215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~ 294 (353)
T 2z80_A 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294 (353)
T ss_dssp HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT
T ss_pred hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH
Confidence 2233447899999999999986654443 346779999999999885 367778899999999999999994444
Q ss_pred CCccccCccceeecccCcceecCC
Q 039161 233 EQLLSVTALALLNLSYNRLWGRIP 256 (333)
Q Consensus 233 ~~~~~l~~L~~L~l~~N~l~~~~p 256 (333)
..+..+++|+.|++++|++++..|
T Consensus 295 ~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHhcCCCCCEEEeeCCCccCcCC
Confidence 446899999999999999987665
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=8.4e-27 Score=203.10 Aligned_cols=224 Identities=16% Similarity=0.216 Sum_probs=184.8
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
+++ +|++|++++|.+++..|..|.++++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..|..+++|++
T Consensus 76 ~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 76 GLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp TCT-TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred CCC-CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence 456 8999999999999998999999999999999999999 5665554 79999999999999777778999999999
Q ss_pred EEcccCcCCC--CCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161 82 LVLRSNQFDC--PPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD 159 (333)
Q Consensus 82 L~L~~n~l~~--~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (333)
|++++|.++. ..+..+ ..+ +|++|++++|.+++ +|..++ ++|+.+++.++... ...
T Consensus 152 L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n~l~~-l~~~~~---~~L~~L~l~~n~i~---------------~~~ 209 (332)
T 2ft3_A 152 IEMGGNPLENSGFEPGAF--DGL-KLNYLRISEAKLTG-IPKDLP---ETLNELHLDHNKIQ---------------AIE 209 (332)
T ss_dssp EECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSSBCSS-CCSSSC---SSCSCCBCCSSCCC---------------CCC
T ss_pred EECCCCccccCCCCcccc--cCC-ccCEEECcCCCCCc-cCcccc---CCCCEEECCCCcCC---------------ccC
Confidence 9999999964 555544 455 99999999999984 665544 56777777665311 111
Q ss_pred hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccc--
Q 039161 160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS-- 237 (333)
Q Consensus 160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-- 237 (333)
......+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+++..+..+..
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 288 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence 111223688999999999999888888999999999999999999 77888999999999999999999777766654
Q ss_pred ----cCccceeecccCcce
Q 039161 238 ----VTALALLNLSYNRLW 252 (333)
Q Consensus 238 ----l~~L~~L~l~~N~l~ 252 (333)
...++.+++++|++.
T Consensus 289 ~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCSSSCCBSEEECCSSSSC
T ss_pred cccccccccceEeecCccc
Confidence 366899999999986
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=3.3e-26 Score=193.42 Aligned_cols=207 Identities=22% Similarity=0.344 Sum_probs=175.9
Q ss_pred CCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEE
Q 039161 29 SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRII 108 (333)
Q Consensus 29 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 108 (333)
.+.++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++..++..+ ..+++|++|
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~--~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF--KELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT--SSCTTCCEE
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh--cCCCCCCEE
Confidence 45789999999999 5676554 589999999999998777789999999999999999998887766 779999999
Q ss_pred EcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhh
Q 039161 109 DLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLG 188 (333)
Q Consensus 109 ~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 188 (333)
++++|.+++ ++...+.. +++|++|++++|.+++..+..|.
T Consensus 91 ~l~~n~l~~-~~~~~~~~---------------------------------------l~~L~~L~l~~n~l~~~~~~~~~ 130 (270)
T 2o6q_A 91 WVTDNKLQA-LPIGVFDQ---------------------------------------LVNLAELRLDRNQLKSLPPRVFD 130 (270)
T ss_dssp ECCSSCCCC-CCTTTTTT---------------------------------------CSSCCEEECCSSCCCCCCTTTTT
T ss_pred ECCCCcCCc-CCHhHccc---------------------------------------ccCCCEEECCCCccCeeCHHHhC
Confidence 999999984 33332222 67899999999999988888899
Q ss_pred CCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccc
Q 039161 189 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDS 268 (333)
Q Consensus 189 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~ 268 (333)
.+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++++ +|.. .|....
T Consensus 131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~----~~~~l~ 205 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEG----AFDSLE 205 (270)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTT----TTTTCT
T ss_pred cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHH----Hhcccc
Confidence 99999999999999998777789999999999999999998777789999999999999999984 4433 344444
Q ss_pred cccccCCCCCCCCCCCC
Q 039161 269 YIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 269 ~~~~~~l~g~~~~~~C~ 285 (333)
....+.+.+||+.|+|.
T Consensus 206 ~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 206 KLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TCCEEECCSSCBCCSSS
T ss_pred CCCEEEecCCCeeCCCc
Confidence 55667899999999996
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.5e-28 Score=209.87 Aligned_cols=224 Identities=27% Similarity=0.363 Sum_probs=147.4
Q ss_pred cccEEECcCCccc-cccchhhh-------CCCCccEEECCCCcCcCCCChhh--cCCCCCcEEEccCCcCCCcccccccC
Q 039161 6 ELITLHLENNSLE-GHIHNTFA-------NASHLRSLDLYSNKLEGPLPRSL--AKYIKLEVVNVENNMISDSFPCWMGS 75 (333)
Q Consensus 6 ~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~ 75 (333)
.+++|+|++|.++ ...|..+. ++++|++|++++|++++.+|..+ ..+++|++|++++|.+++. |..+..
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence 3667777777773 34454444 67788888888888877777765 6777888888888887765 666655
Q ss_pred C-----CCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCC--cc-cccChHHhhhhcccCcccccccccc
Q 039161 76 L-----SELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLP--RR-IFPSMEAMKNVDEQGRLEYMGRAFC 147 (333)
Q Consensus 76 l-----~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~-~~~~l~~L~~l~~~~~~~~~~~~~~ 147 (333)
+ ++|++|++++|++.+..+..+ ..+++|++|++++|.+.+..+ .. .+..
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~--------------------- 199 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPALSTLDLSDNPELGERGLISALCPLK--------------------- 199 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSCCEEECCSCTTCHHHHHHHHSCTTS---------------------
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCCCEEECCCCCcCcchHHHHHHHhcc---------------------
Confidence 5 778888888888877776666 667788888888877654321 11 0122
Q ss_pred cCceEEeecCcchhhhhhhhccceEEccCcccCc---cchhhhhCCCCCCEEEccCCcCCCCCc-cccccCCCCcEEeCC
Q 039161 148 DESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHG---EISEVLGNFKSLKVLNLSHNSLTGNIP-VSFENMTALESLDLS 223 (333)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls 223 (333)
+++|++|++++|++++ .....+..+++|++|++++|.+++..| ..+..+++|+.|+|+
T Consensus 200 ------------------l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 200 ------------------FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp ------------------CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred ------------------CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 5677777777777762 112334566777777777777776554 445566777777777
Q ss_pred CCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCC
Q 039161 224 FNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT 281 (333)
Q Consensus 224 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~ 281 (333)
+|.++ .+|..+. ++|+.|++++|++++. |. +........+++.+|+++
T Consensus 262 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~------~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 262 FTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS------PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC------TTTSCEEEEEECTTCTTT
T ss_pred CCccC-hhhhhcc--CCceEEECCCCCCCCC-hh------HhhCCCCCEEeccCCCCC
Confidence 77777 5666554 6777777777777643 43 222233344566666654
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=218.35 Aligned_cols=248 Identities=23% Similarity=0.231 Sum_probs=157.0
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCC-cccccccCCCCCC
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISD-SFPCWMGSLSELK 80 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 80 (333)
.++ +|++|+|++|++++..|..|+++++|++|++++|+++ .+|.. .+++|++|++++|.+++ ..|..|..+++|+
T Consensus 43 ~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 43 SLS-KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp TCT-TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred ccc-cccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence 355 7888888888888888888888888888888888888 45554 78888888888888886 3677888888888
Q ss_pred EEEcccCcCCCCCCCCCCcccCCcc--cEEEcCCCcc--cccCCccc-------------------------ccChHHhh
Q 039161 81 ILVLRSNQFDCPPCNSNITFPFQAL--RIIDLSHTEF--TGFLPRRI-------------------------FPSMEAMK 131 (333)
Q Consensus 81 ~L~L~~n~l~~~~~~~~~~~~l~~L--~~L~ls~n~l--~~~~~~~~-------------------------~~~l~~L~ 131 (333)
+|++++|.+++. .+ ..+++| ++|++++|.+ .+..|..+ +..++.|+
T Consensus 119 ~L~L~~n~l~~~---~~--~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 193 (520)
T 2z7x_B 119 FLGLSTTHLEKS---SV--LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193 (520)
T ss_dssp EEEEEESSCCGG---GG--GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred EEEecCcccchh---hc--cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence 888888887752 22 556677 8888888877 44444331 12234444
Q ss_pred hhcccCcc---------------cccc---------------------cc---cccCceEEe---ecC-c----------
Q 039161 132 NVDEQGRL---------------EYMG---------------------RA---FCDESITVA---MKG-H---------- 158 (333)
Q Consensus 132 ~l~~~~~~---------------~~~~---------------------~~---~~~~~~~~~---~~~-~---------- 158 (333)
.+++..+. .... .. .......+. ..+ .
T Consensus 194 ~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 273 (520)
T 2z7x_B 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273 (520)
T ss_dssp ECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred eccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccc
Confidence 44433321 0000 00 000000000 000 0
Q ss_pred -----------------c-hhh------------------------hhhhhccceEEccCcccCccchhhhhCCCCCCEE
Q 039161 159 -----------------D-FQL------------------------QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVL 196 (333)
Q Consensus 159 -----------------~-~~~------------------------~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 196 (333)
+ ..+ ...++.|++|++++|++++..|..+..+++|++|
T Consensus 274 ~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 353 (520)
T 2z7x_B 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353 (520)
T ss_dssp CCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEE
T ss_pred cCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEE
Confidence 0 000 0234567777777777776666667777777777
Q ss_pred EccCCcCCC--CCccccccCCCCcEEeCCCCcCCCCCCC-CccccCccceeecccCcceecCCCC
Q 039161 197 NLSHNSLTG--NIPVSFENMTALESLDLSFNKLDGRIPE-QLLSVTALALLNLSYNRLWGRIPRG 258 (333)
Q Consensus 197 ~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~p~~ 258 (333)
++++|++++ .+|..+..+++|++|++++|.+++.+|. .+..+++|+.|++++|.+++.+|..
T Consensus 354 ~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp ECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred EccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence 777777775 3445667777777777777777763443 3666677777777777776655543
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.2e-26 Score=223.38 Aligned_cols=263 Identities=14% Similarity=0.157 Sum_probs=184.4
Q ss_pred CcCcccEEECcCCccccccch--hhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCC-C
Q 039161 3 FSTELITLHLENNSLEGHIHN--TFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSE-L 79 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L 79 (333)
+| +|++|+|++|.++ .+|. .|.++++|++|++++|.++ .+| .|..+++|++|+|++|.++ .+|..+..+++ |
T Consensus 547 l~-~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L 621 (876)
T 4ecn_A 547 GP-KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQV 621 (876)
T ss_dssp TT-TCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTC
T ss_pred cC-CccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccC
Confidence 44 8999999999999 6676 8999999999999999998 777 8889999999999999998 78888888888 9
Q ss_pred CEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCccc--cc--ChHHhhhhcccCccc-ccccccc---cCce
Q 039161 80 KILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI--FP--SMEAMKNVDEQGRLE-YMGRAFC---DESI 151 (333)
Q Consensus 80 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~--~~--~l~~L~~l~~~~~~~-~~~~~~~---~~~~ 151 (333)
++|++++|.++.. +..+.....++|+.|++++|.+++.+|... .. .+.+|+.+++.++.. .++...+ ....
T Consensus 622 ~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 622 EGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700 (876)
T ss_dssp CEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred CEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence 9999999998844 344422333458888888888776554211 11 223566666655431 1111110 0000
Q ss_pred EEee--c---Ccchhhh-------hhhhccceEEccCcccCccchhhhh--CCCCCCEEEccCCcCCCCCccccccCCCC
Q 039161 152 TVAM--K---GHDFQLQ-------NIFVMFRAMDFSSNRFHGEISEVLG--NFKSLKVLNLSHNSLTGNIPVSFENMTAL 217 (333)
Q Consensus 152 ~~~~--~---~~~~~~~-------~~~~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 217 (333)
.+.. + ..+.... ..+++|+.|++++|+++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|
T Consensus 701 ~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L 778 (876)
T 4ecn_A 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778 (876)
T ss_dssp EEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred EEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence 0110 0 1111111 11348888999998888 6777776 88889999999998886 67788888899
Q ss_pred cEEeCCC------CcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCC
Q 039161 218 ESLDLSF------NKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT 281 (333)
Q Consensus 218 ~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~ 281 (333)
+.|+|++ |.+.+.+|..+..+++|+.|++++|++ +.+|.... .....+++.+|++.
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-------~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-------PQLYILDIADNPNI 840 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-------SSSCEEECCSCTTC
T ss_pred CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-------CCCCEEECCCCCCC
Confidence 9998876 777778888888888999999999988 68887522 13344566666654
No 50
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=1.3e-26 Score=197.61 Aligned_cols=202 Identities=20% Similarity=0.220 Sum_probs=160.2
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
+++ ++++++++++.++.. |..+. ++++.|++++|.+++..+..|..+++|++|+|++|.+++..+ ...+++|++
T Consensus 8 ~l~-~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 8 KVA-SHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp CST-TCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred ccC-CccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 355 788999999998854 43332 678999999999988778888899999999999999885433 267889999
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchh
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ 161 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (333)
|++++|.++..+. .+ ..+++|++|++++|.+++..+. .+..
T Consensus 82 L~Ls~N~l~~l~~-~~--~~l~~L~~L~l~~N~l~~l~~~-~~~~----------------------------------- 122 (290)
T 1p9a_G 82 LDLSHNQLQSLPL-LG--QTLPALTVLDVSFNRLTSLPLG-ALRG----------------------------------- 122 (290)
T ss_dssp EECCSSCCSSCCC-CT--TTCTTCCEEECCSSCCCCCCSS-TTTT-----------------------------------
T ss_pred EECCCCcCCcCch-hh--ccCCCCCEEECCCCcCcccCHH-HHcC-----------------------------------
Confidence 9999998886543 33 6788899999999988843332 2222
Q ss_pred hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcc
Q 039161 162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 241 (333)
Q Consensus 162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 241 (333)
+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.++ .+|..+....+|
T Consensus 123 ----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L 197 (290)
T 1p9a_G 123 ----LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197 (290)
T ss_dssp ----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred ----CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccC
Confidence 567888999999998777777888899999999999998777777888899999999999998 677777777889
Q ss_pred ceeecccCccee
Q 039161 242 ALLNLSYNRLWG 253 (333)
Q Consensus 242 ~~L~l~~N~l~~ 253 (333)
+.+++++|++.+
T Consensus 198 ~~l~L~~Np~~C 209 (290)
T 1p9a_G 198 PFAFLHGNPWLC 209 (290)
T ss_dssp SEEECCSCCBCC
T ss_pred CeEEeCCCCccC
Confidence 999999998863
No 51
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.6e-27 Score=227.88 Aligned_cols=230 Identities=16% Similarity=0.218 Sum_probs=171.3
Q ss_pred CcccEEECcCCccccccchhhhCCCCccEEEC-CCCcCcCC---------------------------------------
Q 039161 5 TELITLHLENNSLEGHIHNTFANASHLRSLDL-YSNKLEGP--------------------------------------- 44 (333)
Q Consensus 5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~--------------------------------------- 44 (333)
.+++.|+|+++.+.|.+|..|+++++|++|+| ++|.++|.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 36899999999999999999999999999999 77754333
Q ss_pred -------------------------------------CChhhcCCCCCcEEEccCCcCCC-----------------ccc
Q 039161 45 -------------------------------------LPRSLAKYIKLEVVNVENNMISD-----------------SFP 70 (333)
Q Consensus 45 -------------------------------------~p~~~~~l~~L~~L~L~~n~l~~-----------------~~~ 70 (333)
+|..|.++++|++|+|++|.+++ .+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 78889999999999999999997 378
Q ss_pred cccc--CCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCc-ccc-cCCcccccChH-------HhhhhcccCcc
Q 039161 71 CWMG--SLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTE-FTG-FLPRRIFPSME-------AMKNVDEQGRL 139 (333)
Q Consensus 71 ~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~-l~~-~~~~~~~~~l~-------~L~~l~~~~~~ 139 (333)
..++ .+++|++|+|++|.+.+..|..+ ..+++|+.|++++|+ +++ .+|.. +..+. +|+.|++.++.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l--~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFL--YDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGG--GGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSC
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHH--hCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCc
Confidence 8877 99999999999999988888766 789999999999998 887 67765 34444 77777776653
Q ss_pred cc-cccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCC-C
Q 039161 140 EY-MGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA-L 217 (333)
Q Consensus 140 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L 217 (333)
-. ++. ......+++|+.|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+++ |
T Consensus 560 L~~ip~---------------~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L 621 (876)
T 4ecn_A 560 LEEFPA---------------SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQV 621 (876)
T ss_dssp CCBCCC---------------HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTC
T ss_pred CCccCC---------------hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccC
Confidence 21 110 001222566777777777776 555 6667777777777777777 66666666766 7
Q ss_pred cEEeCCCCcCCCCCCCCccccCc--cceeecccCcceecCC
Q 039161 218 ESLDLSFNKLDGRIPEQLLSVTA--LALLNLSYNRLWGRIP 256 (333)
Q Consensus 218 ~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~l~~N~l~~~~p 256 (333)
+.|+|++|.++ .+|..+..+.. |+.|++++|++++.+|
T Consensus 622 ~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 622 EGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred CEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence 77777777776 56665555433 6777777777766554
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=5.9e-27 Score=220.26 Aligned_cols=233 Identities=19% Similarity=0.146 Sum_probs=193.7
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCC--CChhhcCCCCCcEEEccCCcCCCcccccccCCCCCC
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGP--LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELK 80 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (333)
++ +|++|++++|...+.. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++ .|..+..+++|+
T Consensus 327 l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~ 402 (606)
T 3vq2_A 327 LP-FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ 402 (606)
T ss_dssp CS-SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred CC-ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence 45 7999999999655433 577899999999999999865 48889999999999999999884 567888999999
Q ss_pred EEEcccCcCCCCCC-CCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161 81 ILVLRSNQFDCPPC-NSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD 159 (333)
Q Consensus 81 ~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (333)
+|++++|++.+..+ ..+ ..+++|++|++++|.+++..|.. +..+++|+.+++.++...-. ..
T Consensus 403 ~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~--------------~~ 465 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAF--LSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDN--------------TL 465 (606)
T ss_dssp EEECTTSEEESTTTTTTT--TTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGG--------------EE
T ss_pred eeECCCCccCCccChhhh--hccccCCEEECcCCCCCccchhh-hcCCCCCCEEECCCCcCCCc--------------ch
Confidence 99999999988876 444 77899999999999998766654 77888899988877642110 00
Q ss_pred hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccC
Q 039161 160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT 239 (333)
Q Consensus 160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 239 (333)
......+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|.++ .+|..+..++
T Consensus 466 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 111223789999999999999888999999999999999999999988999999999999999999999 6777788886
Q ss_pred -ccceeecccCcceecCCC
Q 039161 240 -ALALLNLSYNRLWGRIPR 257 (333)
Q Consensus 240 -~L~~L~l~~N~l~~~~p~ 257 (333)
+|+.+++++|++.+..+.
T Consensus 545 ~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 545 KSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTCCEEECCSCCCCCSSTT
T ss_pred ccCcEEEccCCCcccCCcc
Confidence 599999999999866554
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=5.6e-26 Score=192.24 Aligned_cols=200 Identities=21% Similarity=0.264 Sum_probs=132.3
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+|+.|++++|.++.. ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 566777777766532 236667777777777777664 2 356667777777777777776555566667777777777
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|++++.++..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 118 ~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~-~~~~~--------------------------------------- 155 (272)
T 3rfs_A 118 ENQLQSLPDGVF--DKLTNLTYLNLAHNQLQSLPK-GVFDK--------------------------------------- 155 (272)
T ss_dssp TSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT-TTTTT---------------------------------------
T ss_pred CCcCCccCHHHh--ccCCCCCEEECCCCccCccCH-HHhcc---------------------------------------
Confidence 777766665544 556677777777776663322 21111
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
+++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+. +++++.++
T Consensus 156 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~ 228 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLS 228 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHH
T ss_pred CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHH
Confidence 45677777777777766666667777777777777777766666677777777777777766632 44577777
Q ss_pred cccCcceecCCCC
Q 039161 246 LSYNRLWGRIPRG 258 (333)
Q Consensus 246 l~~N~l~~~~p~~ 258 (333)
+..|.++|.+|..
T Consensus 229 ~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 229 EWINKHSGVVRNS 241 (272)
T ss_dssp HHHHHTGGGBBCT
T ss_pred HHHHhCCCcccCc
Confidence 7777777777754
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4e-27 Score=203.75 Aligned_cols=216 Identities=20% Similarity=0.154 Sum_probs=150.0
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+|++|+|++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence 68888888888887777888888888888888888875544 778888888888888877432 23788888888
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|++++..+. .+++|++|++++|.+++..+ ..+..+++|+.+++.++...-. ....+...
T Consensus 108 ~n~l~~~~~~-----~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~--------------~~~~~~~~ 167 (317)
T 3o53_A 108 NNNISRVSCS-----RGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTV--------------NFAELAAS 167 (317)
T ss_dssp SSCCSEEEEC-----CCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCCEE--------------EGGGGGGG
T ss_pred CCccCCcCcc-----ccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCCcc--------------cHHHHhhc
Confidence 8888766543 25678888888888875443 3356666777777665431100 01111222
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
++.|++|++++|.+++. +. ...+++|++|++++|.+++. |..+..+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus 168 l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243 (317)
T ss_dssp TTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred cCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEE
Confidence 56778888888877744 32 22467788888888887744 334777778888888888777 4666677777788888
Q ss_pred cccCcce
Q 039161 246 LSYNRLW 252 (333)
Q Consensus 246 l~~N~l~ 252 (333)
+++|+++
T Consensus 244 l~~N~~~ 250 (317)
T 3o53_A 244 LRGNGFH 250 (317)
T ss_dssp CTTCCCB
T ss_pred ccCCCcc
Confidence 8888776
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.9e-26 Score=214.36 Aligned_cols=87 Identities=26% Similarity=0.309 Sum_probs=66.8
Q ss_pred hhhccceEEccCcccCccchh---hhhCCCCCCEEEccCCcCCCCCc--cccccCCCCcEEeCCCCcCCCCCCCCccccC
Q 039161 165 IFVMFRAMDFSSNRFHGEISE---VLGNFKSLKVLNLSHNSLTGNIP--VSFENMTALESLDLSFNKLDGRIPEQLLSVT 239 (333)
Q Consensus 165 ~~~~L~~L~ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 239 (333)
.+++|++|++++|++++..|. .++.+++|++|++++|++++..+ ..+..+++|++|++++|.++ .+|..+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 467788888888888765543 36677888888888888875432 45778888888888888888 6777777888
Q ss_pred ccceeecccCcce
Q 039161 240 ALALLNLSYNRLW 252 (333)
Q Consensus 240 ~L~~L~l~~N~l~ 252 (333)
+|+.|++++|.++
T Consensus 411 ~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 411 KMRFLNLSSTGIR 423 (549)
T ss_dssp TCCEEECTTSCCS
T ss_pred cccEEECCCCCcc
Confidence 8888888888876
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=9.4e-27 Score=212.61 Aligned_cols=216 Identities=21% Similarity=0.166 Sum_probs=166.5
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+|++|+|++|.+++..|..|.++++|++|+|++|.+++..| |..+++|++|+|++|.+++..+ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 89999999999999889999999999999999999987665 8899999999999999985332 3899999999
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|.+++.++. .+++|+.|++++|.+++..|.. +..+++|+.|++.+|...-. .+..+...
T Consensus 108 ~N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~--------------~~~~l~~~ 167 (487)
T 3oja_A 108 NNNISRVSCS-----RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTV--------------NFAELAAS 167 (487)
T ss_dssp SSCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEE--------------EGGGGGGG
T ss_pred CCcCCCCCcc-----ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCc--------------ChHHHhhh
Confidence 9999887654 3578999999999999765544 56677777777766531100 01112223
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
++.|+.|++++|.+++..+ ...+++|+.|+|++|.+++.+| .+..+++|+.|+|++|.++ .+|..+..+++|+.|+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243 (487)
T ss_dssp TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred CCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEE
Confidence 6778888888888875532 2357788888888888886444 4777888888888888888 4666777788888888
Q ss_pred cccCcce
Q 039161 246 LSYNRLW 252 (333)
Q Consensus 246 l~~N~l~ 252 (333)
+++|.+.
T Consensus 244 l~~N~l~ 250 (487)
T 3oja_A 244 LRGNGFH 250 (487)
T ss_dssp CTTCCBC
T ss_pred cCCCCCc
Confidence 8888886
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=7.8e-26 Score=213.53 Aligned_cols=275 Identities=17% Similarity=0.201 Sum_probs=207.0
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
+++ +|++|+|++|+|+++.+++|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++
T Consensus 74 ~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~ 152 (635)
T 4g8a_A 74 SFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152 (635)
T ss_dssp TCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred CCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence 456 8999999999999999999999999999999999999878888999999999999999999877778999999999
Q ss_pred EEcccCcCCCCC-CCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhh----------------------------
Q 039161 82 LVLRSNQFDCPP-CNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKN---------------------------- 132 (333)
Q Consensus 82 L~L~~n~l~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~---------------------------- 132 (333)
|++++|.++... +..+ ..+++|++|++++|++++..+.. +..+..+..
T Consensus 153 L~Ls~N~l~~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l 229 (635)
T 4g8a_A 153 LNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 229 (635)
T ss_dssp EECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred eccccCccccCCCchhh--ccchhhhhhcccCcccccccccc-ccchhhhhhhhhhhhcccCcccccCcccccchhhhhh
Confidence 999999998754 3333 67899999999999887543322 111110000
Q ss_pred --------------------------------------------------------------------------------
Q 039161 133 -------------------------------------------------------------------------------- 132 (333)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (333)
T Consensus 230 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 309 (635)
T 4g8a_A 230 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVS 309 (635)
T ss_dssp EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCS
T ss_pred hhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccc
Confidence
Q ss_pred -----------------------hcccCcc-cccccc----------------------ccc---------Cce------
Q 039161 133 -----------------------VDEQGRL-EYMGRA----------------------FCD---------ESI------ 151 (333)
Q Consensus 133 -----------------------l~~~~~~-~~~~~~----------------------~~~---------~~~------ 151 (333)
+++.++. ..+... ... ...
T Consensus 310 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 389 (635)
T 4g8a_A 310 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 389 (635)
T ss_dssp EEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred cccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccc
Confidence 0000000 000000 000 000
Q ss_pred ----------------------------------EEeec------------------------------Ccchhhhhhhh
Q 039161 152 ----------------------------------TVAMK------------------------------GHDFQLQNIFV 167 (333)
Q Consensus 152 ----------------------------------~~~~~------------------------------~~~~~~~~~~~ 167 (333)
..... .........++
T Consensus 390 ~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~ 469 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469 (635)
T ss_dssp CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence 00000 00011123468
Q ss_pred ccceEEccCcccC-ccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeec
Q 039161 168 MFRAMDFSSNRFH-GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 246 (333)
Q Consensus 168 ~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 246 (333)
.++.|++++|.+. ...|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|++
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 8999999999754 457888999999999999999999999999999999999999999999888889999999999999
Q ss_pred ccCcceecCCCCCccCCcccc-ccccccCCCCCCCCCCCC
Q 039161 247 SYNRLWGRIPRGNQFNTFQND-SYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 247 ~~N~l~~~~p~~~~~~~~~~~-~~~~~~~l~g~~~~~~C~ 285 (333)
++|++++..|... ... .....+.+.+||+.|+|.
T Consensus 550 s~N~l~~~~~~~l-----~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 550 SLNHIMTSKKQEL-----QHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTSCCCBCCSSCT-----TCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCCCCHHHH-----HhhhCcCCEEEeeCCCCcccCC
Confidence 9999997777642 222 234567899999999996
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=2.1e-25 Score=190.23 Aligned_cols=208 Identities=22% Similarity=0.252 Sum_probs=174.5
Q ss_pred hhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCC
Q 039161 24 TFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQ 103 (333)
Q Consensus 24 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 103 (333)
.+.+++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+. ..++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~ 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLP 77 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCT
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCC
Confidence 4678899999999999998 5665553 6899999999999988888999999999999999999877643 5688
Q ss_pred cccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccc
Q 039161 104 ALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEI 183 (333)
Q Consensus 104 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 183 (333)
+|++|++++|.++ .+|..+ .. ++.|++|++++|++++..
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~-~~---------------------------------------l~~L~~L~l~~N~l~~l~ 116 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLG-QT---------------------------------------LPALTVLDVSFNRLTSLP 116 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCT-TT---------------------------------------CTTCCEEECCSSCCCCCC
T ss_pred cCCEEECCCCcCC-cCchhh-cc---------------------------------------CCCCCEEECCCCcCcccC
Confidence 9999999999988 445321 11 678899999999999777
Q ss_pred hhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCC
Q 039161 184 SEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNT 263 (333)
Q Consensus 184 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 263 (333)
+..|..+++|++|++++|++++..+..|..+++|+.|+|++|+++...+..+..+++|+.|++++|+++ .+|....
T Consensus 117 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~--- 192 (290)
T 1p9a_G 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF--- 192 (290)
T ss_dssp SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT---
T ss_pred HHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc---
Confidence 788999999999999999999888888899999999999999999766677888999999999999998 6676421
Q ss_pred ccccccccccCCCCCCCCCCCC
Q 039161 264 FQNDSYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 264 ~~~~~~~~~~~l~g~~~~~~C~ 285 (333)
.......+.+.|||+.|+|.
T Consensus 193 --~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 193 --GSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp --TTCCCSEEECCSCCBCCSGG
T ss_pred --ccccCCeEEeCCCCccCcCc
Confidence 12234567889999999985
No 59
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.6e-25 Score=194.90 Aligned_cols=235 Identities=17% Similarity=0.233 Sum_probs=146.2
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
.++ +|++|++++|.+++. ..|.++++|++|++++|.+++ ++. +..+++|++|++++|......+ .+..+++|++
T Consensus 86 ~l~-~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~ 159 (347)
T 4fmz_A 86 NLV-KLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNY 159 (347)
T ss_dssp TCT-TCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCE
T ss_pred cCC-cCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcE
Confidence 456 899999999999864 358999999999999999985 443 8899999999999997654443 4888999999
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-cccc-ccc--CceEEeecC
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGRA-FCD--ESITVAMKG 157 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~~-~~~--~~~~~~~~~ 157 (333)
|++++|.+.+..+ ...+++|++|++++|.+++..+ +..++.|+.+++..+... +... ... ....+....
T Consensus 160 L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 160 LTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK 232 (347)
T ss_dssp EECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EEecCCCcCCchh----hccCCCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc
Confidence 9999998887664 2678899999999998885433 566677777776654311 1100 000 000000000
Q ss_pred c-chhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCcc
Q 039161 158 H-DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL 236 (333)
Q Consensus 158 ~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 236 (333)
. .......+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+.
T Consensus 233 l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 233 ITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred cCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence 0 000022245555555555555432 2345555555555555555533 2345555555555555555555555555
Q ss_pred ccCccceeecccCccee
Q 039161 237 SVTALALLNLSYNRLWG 253 (333)
Q Consensus 237 ~l~~L~~L~l~~N~l~~ 253 (333)
.+++|+.|++++|++++
T Consensus 309 ~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITD 325 (347)
T ss_dssp TCTTCSEEECCSSSCCC
T ss_pred ccccCCEEEccCCcccc
Confidence 55555555555555553
No 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=7e-26 Score=188.00 Aligned_cols=197 Identities=17% Similarity=0.199 Sum_probs=98.7
Q ss_pred CcccEEECcCCccccccchhhhCCCCccEEECCCCc-CcCCCChhhcCCCCCcEEEccC-CcCCCcccccccCCCCCCEE
Q 039161 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNK-LEGPLPRSLAKYIKLEVVNVEN-NMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 82 (333)
+++++|++++|++++..+..|.++++|++|++++|+ ++...+.+|.++++|++|++++ |.++...+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 355566666666655555555555666666666654 5544444555555666666655 55554444455555566666
Q ss_pred EcccCcCCCCCCCCCCcccCCccc---EEEcCCC-cccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCc
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALR---IIDLSHT-EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGH 158 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (333)
++++|++++.+. + ..+++|+ +|++++| .+++ ++...+..
T Consensus 111 ~l~~n~l~~lp~--~--~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~-------------------------------- 153 (239)
T 2xwt_C 111 GIFNTGLKMFPD--L--TKVYSTDIFFILEITDNPYMTS-IPVNAFQG-------------------------------- 153 (239)
T ss_dssp EEEEECCCSCCC--C--TTCCBCCSEEEEEEESCTTCCE-ECTTTTTT--------------------------------
T ss_pred eCCCCCCccccc--c--ccccccccccEEECCCCcchhh-cCcccccc--------------------------------
Confidence 666555555332 2 3344444 5555555 4442 22111111
Q ss_pred chhhhhhhhccc-eEEccCcccCccchhhhhCCCCCCEEEccCCc-CCCCCccccccC-CCCcEEeCCCCcCCCCCCCCc
Q 039161 159 DFQLQNIFVMFR-AMDFSSNRFHGEISEVLGNFKSLKVLNLSHNS-LTGNIPVSFENM-TALESLDLSFNKLDGRIPEQL 235 (333)
Q Consensus 159 ~~~~~~~~~~L~-~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~ 235 (333)
+++|+ +|++++|+++...+..+.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|.+++ +|..
T Consensus 154 -------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~- 223 (239)
T 2xwt_C 154 -------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK- 223 (239)
T ss_dssp -------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-
T ss_pred -------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-
Confidence 34445 5555555555222223333 455555555553 554444455555 555555555555552 2221
Q ss_pred cccCccceeecccC
Q 039161 236 LSVTALALLNLSYN 249 (333)
Q Consensus 236 ~~l~~L~~L~l~~N 249 (333)
.+++|+.|+++++
T Consensus 224 -~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 -GLEHLKELIARNT 236 (239)
T ss_dssp -TCTTCSEEECTTC
T ss_pred -HhccCceeeccCc
Confidence 3344555554443
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.8e-27 Score=204.20 Aligned_cols=222 Identities=21% Similarity=0.261 Sum_probs=171.9
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCc-CCCChhhc-------CCCCCcEEEccCCcCCCcccccc--cC
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLE-GPLPRSLA-------KYIKLEVVNVENNMISDSFPCWM--GS 75 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--~~ 75 (333)
+|+.|++++|.+ ..|..+... |+.|++++|.++ ..+|..+. ++++|++|++++|.+++..|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 578888899988 556655544 899999999984 45676665 78999999999999998888876 88
Q ss_pred CCCCCEEEcccCcCCCCCCCCCCcccC-----CcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCc
Q 039161 76 LSELKILVLRSNQFDCPPCNSNITFPF-----QALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDES 150 (333)
Q Consensus 76 l~~L~~L~L~~n~l~~~~~~~~~~~~l-----~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 150 (333)
+++|++|++++|++++. +..+ ..+ ++|++|++++|.+++..+.. +..
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~--~~l~~~~~~~L~~L~L~~N~l~~~~~~~-~~~------------------------ 171 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWL--AELQQWLKPGLKVLSIAQAHSLNFSCEQ-VRV------------------------ 171 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHH--HHHHTTCCTTCCEEEEESCSCCCCCTTT-CCC------------------------
T ss_pred CCCccEEEccCCCCcch-hHHH--HHHHHhhcCCCcEEEeeCCCCccchHHH-hcc------------------------
Confidence 99999999999999887 4433 344 89999999999998655443 221
Q ss_pred eEEeecCcchhhhhhhhccceEEccCcccCcc--chhhh--hCCCCCCEEEccCCcCCCC---CccccccCCCCcEEeCC
Q 039161 151 ITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE--ISEVL--GNFKSLKVLNLSHNSLTGN---IPVSFENMTALESLDLS 223 (333)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~--~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls 223 (333)
+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++. ....+..+++|++|+++
T Consensus 172 ---------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 172 ---------------FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp ---------------CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred ---------------CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 67899999999998765 34444 8899999999999999842 22345678999999999
Q ss_pred CCcCCCCCC-CCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCCC
Q 039161 224 FNKLDGRIP-EQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTV 282 (333)
Q Consensus 224 ~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~ 282 (333)
+|.+++..| ..+..+++|+.|++++|.++ .+|.... .....+++.+|.+..
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-------~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-------AKLSVLDLSYNRLDR 288 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-------SEEEEEECCSSCCCS
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-------CCceEEECCCCCCCC
Confidence 999998775 45667899999999999998 7777533 223445666666543
No 62
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.2e-25 Score=190.23 Aligned_cols=203 Identities=18% Similarity=0.237 Sum_probs=172.9
Q ss_pred ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS 86 (333)
Q Consensus 7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 86 (333)
+..+++..+.+.+.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 444556666665443 35678999999999999983 33 588999999999999999863 4788999999999999
Q ss_pred CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhh
Q 039161 87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIF 166 (333)
Q Consensus 87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (333)
|.+++..+..+ ..+++|++|++++|.+++..+. .+.. +
T Consensus 95 n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~-~~~~---------------------------------------l 132 (272)
T 3rfs_A 95 NQLQSLPNGVF--DKLTNLKELVLVENQLQSLPDG-VFDK---------------------------------------L 132 (272)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECTTSCCCCCCTT-TTTT---------------------------------------C
T ss_pred CccCccChhHh--cCCcCCCEEECCCCcCCccCHH-Hhcc---------------------------------------C
Confidence 99998887766 7889999999999999854332 2221 6
Q ss_pred hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeec
Q 039161 167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 246 (333)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 246 (333)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence 78999999999999888888899999999999999999888888899999999999999999888888999999999999
Q ss_pred ccCcceecCCC
Q 039161 247 SYNRLWGRIPR 257 (333)
Q Consensus 247 ~~N~l~~~~p~ 257 (333)
++|++.+.+|.
T Consensus 213 ~~N~~~~~~~~ 223 (272)
T 3rfs_A 213 HDNPWDCTCPG 223 (272)
T ss_dssp CSSCBCCCTTT
T ss_pred cCCCccccCcH
Confidence 99999988774
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.7e-25 Score=208.43 Aligned_cols=125 Identities=17% Similarity=0.209 Sum_probs=106.2
Q ss_pred ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS 86 (333)
Q Consensus 7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 86 (333)
.+++++++|.+++ +|..+. ++|++|++++|.+++..|.+|.++++|++|+|++|.+++..|..|..+++|++|++++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 4789999999996 555443 8999999999999988888999999999999999999988889999999999999999
Q ss_pred CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcc
Q 039161 87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRL 139 (333)
Q Consensus 87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~ 139 (333)
|+++..+.. .+++|++|++++|.+++......+..+++|+.+++.++.
T Consensus 110 N~l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 110 NRLQNISCC-----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp SCCCEECSC-----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CcCCccCcc-----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 999866543 589999999999999863222347778888888776653
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=9.5e-26 Score=210.51 Aligned_cols=230 Identities=19% Similarity=0.206 Sum_probs=168.4
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcc--cccccCCCCCCEEE
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSF--PCWMGSLSELKILV 83 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ 83 (333)
+|++|++++|.+. ..|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|+
T Consensus 305 ~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 305 GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379 (570)
T ss_dssp CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence 5788888888887 3343 4677888888888887765554 67788888888888887543 56677888888888
Q ss_pred cccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhh
Q 039161 84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQ 163 (333)
Q Consensus 84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (333)
+++|.+.+.++. + ..+++|++|++++|.+++..+...+..+++|+.+++..+.... ......
T Consensus 380 l~~n~l~~~~~~-~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~ 441 (570)
T 2z63_A 380 LSFNGVITMSSN-F--LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV---------------AFNGIF 441 (570)
T ss_dssp CCSCSEEEEEEE-E--ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE---------------CCTTTT
T ss_pred CCCCcccccccc-c--cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc---------------cchhhh
Confidence 888887766544 3 6678888888888888766665556666666666665542110 001111
Q ss_pred hhhhccceEEccCcccC-ccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccc
Q 039161 164 NIFVMFRAMDFSSNRFH-GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 242 (333)
Q Consensus 164 ~~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 242 (333)
..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 22677888888888876 46777788888888888888888877788888888888888888888877777778888888
Q ss_pred eeecccCcceecCCCC
Q 039161 243 LLNLSYNRLWGRIPRG 258 (333)
Q Consensus 243 ~L~l~~N~l~~~~p~~ 258 (333)
.+++++|++++.+|..
T Consensus 522 ~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 522 KIWLHTNPWDCSCPRI 537 (570)
T ss_dssp EEECCSSCBCCCTTTT
T ss_pred EEEecCCcccCCCcch
Confidence 8888888888777654
No 65
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.4e-24 Score=190.28 Aligned_cols=256 Identities=14% Similarity=0.204 Sum_probs=124.1
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
++++|+++++.+... + .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++. + +.+..+++|++|+++
T Consensus 45 ~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECT
T ss_pred cccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECc
Confidence 455555555555432 2 24455555555555555543 222 4555555555555555543 1 234455555555555
Q ss_pred cCcCCCCCCCC-------------------CCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccc
Q 039161 86 SNQFDCPPCNS-------------------NITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRA 145 (333)
Q Consensus 86 ~n~l~~~~~~~-------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~ 145 (333)
+|.+.+..+.. .....+++|++|++++|.+.+..+ +..+++|+.+++.++.. .+...
T Consensus 119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~ 195 (347)
T 4fmz_A 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISPL 195 (347)
T ss_dssp TSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCGGG
T ss_pred CCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCcccccccc
Confidence 55544433200 001344555555555555443222 44455555555544321 11110
Q ss_pred c-cc--CceEEeecCc-chhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEe
Q 039161 146 F-CD--ESITVAMKGH-DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD 221 (333)
Q Consensus 146 ~-~~--~~~~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 221 (333)
. .. .......... .......+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|+
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLN 271 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred cCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEE
Confidence 0 00 0000000000 00112335667777777777664333 66667777777777776643 3466667777777
Q ss_pred CCCCcCCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCC
Q 039161 222 LSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT 281 (333)
Q Consensus 222 Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~ 281 (333)
+++|.+++. ..+..+++|+.|++++|.+++..|. .+........+.+.+|++.
T Consensus 272 l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-----~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 272 VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-----VIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-----HHHTCTTCSEEECCSSSCC
T ss_pred ccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-----HhhccccCCEEEccCCccc
Confidence 777777643 3456667777777777777644432 1222233344455555544
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.93 E-value=3.1e-26 Score=197.58 Aligned_cols=201 Identities=24% Similarity=0.269 Sum_probs=137.7
Q ss_pred ccEEECcCCccccccch---hhhCCCCccEEECCCCcCcCCCChhh--cCCCCCcEEEccCCcCCCccc----ccccCCC
Q 039161 7 LITLHLENNSLEGHIHN---TFANASHLRSLDLYSNKLEGPLPRSL--AKYIKLEVVNVENNMISDSFP----CWMGSLS 77 (333)
Q Consensus 7 L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~ 77 (333)
++.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 67788888776532111 12345779999999999998888888 889999999999999987544 3445789
Q ss_pred CCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCccccc--CC-cccccChHHhhhhcccCcccccccccccCceEEe
Q 039161 78 ELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF--LP-RRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVA 154 (333)
Q Consensus 78 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 154 (333)
+|++|++++|++.+..+..+ ..+++|++|++++|++.+. ++ ...+..
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~---------------------------- 195 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQV--RAFPALTSLDLSDNPGLGERGLMAALCPHK---------------------------- 195 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSC--CCCTTCCEEECCSCTTCHHHHHHTTSCTTS----------------------------
T ss_pred CCCEEEeeCCCcchhhHHHh--ccCCCCCEEECCCCCCccchhhhHHHhhhc----------------------------
Confidence 99999999999988887776 7889999999999987642 11 111222
Q ss_pred ecCcchhhhhhhhccceEEccCcccCccchh----hhhCCCCCCEEEccCCcCCCCCccccccC---CCCcEEeCCCCcC
Q 039161 155 MKGHDFQLQNIFVMFRAMDFSSNRFHGEISE----VLGNFKSLKVLNLSHNSLTGNIPVSFENM---TALESLDLSFNKL 227 (333)
Q Consensus 155 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l 227 (333)
+++|++|++++|+++ .++. .+..+++|++|+|++|.+++..|..+..+ ++|++|+|++|.+
T Consensus 196 -----------l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 196 -----------FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp -----------SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred -----------CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence 455666666666665 2222 23555666666666666665555555544 4666666666666
Q ss_pred CCCCCCCccccCccceeecccCcce
Q 039161 228 DGRIPEQLLSVTALALLNLSYNRLW 252 (333)
Q Consensus 228 ~~~~~~~~~~l~~L~~L~l~~N~l~ 252 (333)
+ .+|..+. ++|+.|++++|+++
T Consensus 264 ~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 264 E-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp C-SCCSCCC--SCCSCEECCSCCCC
T ss_pred C-chhhhhc--CCCCEEECCCCcCC
Confidence 6 4455443 56666666666665
No 67
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=9.6e-25 Score=182.45 Aligned_cols=180 Identities=22% Similarity=0.230 Sum_probs=103.8
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
..++++++++.++. +|..+. +++++|++++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 34556666666552 332222 455666666666655555555556666666666666655555555555555555555
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|++++.++..+ ..+++
T Consensus 92 ~n~l~~~~~~~~--~~l~~------------------------------------------------------------- 108 (251)
T 3m19_A 92 NNQLASLPLGVF--DHLTQ------------------------------------------------------------- 108 (251)
T ss_dssp TSCCCCCCTTTT--TTCTT-------------------------------------------------------------
T ss_pred CCcccccChhHh--cccCC-------------------------------------------------------------
Confidence 555554444333 33444
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
|++|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+
T Consensus 109 ---L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 109 ---LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp ---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ---CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 45555555555544444455666666666666666655555666666666666666666655555666666677777
Q ss_pred cccCcceec
Q 039161 246 LSYNRLWGR 254 (333)
Q Consensus 246 l~~N~l~~~ 254 (333)
+++|++++.
T Consensus 186 l~~N~~~c~ 194 (251)
T 3m19_A 186 LFGNQFDCS 194 (251)
T ss_dssp CCSCCBCTT
T ss_pred eeCCceeCC
Confidence 777766543
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=3.5e-26 Score=197.83 Aligned_cols=225 Identities=20% Similarity=0.208 Sum_probs=185.8
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
.++ +|++|+|++|.+++..+ |..+++|++|++++|.+++. ...++|++|++++|.+++..+. .+++|++
T Consensus 56 ~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~ 124 (317)
T 3o53_A 56 PFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKN 124 (317)
T ss_dssp TCT-TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEE
T ss_pred CCC-cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCE
Confidence 456 89999999999987765 89999999999999999843 2448999999999999965544 3688999
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchh
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ 161 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (333)
|++++|++++..+..+ ..+++|++|++++|.+++..+..+...+++|+.+++.++...-. ...
T Consensus 125 L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~--- 187 (317)
T 3o53_A 125 IYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV------------KGQ--- 187 (317)
T ss_dssp EECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE------------ECC---
T ss_pred EECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc------------ccc---
Confidence 9999999998877666 77899999999999999777766666788999999887642100 000
Q ss_pred hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCC-CCCCCCccccCc
Q 039161 162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD-GRIPEQLLSVTA 240 (333)
Q Consensus 162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 240 (333)
..+++|++|++++|++++. |..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +..+..+..+++
T Consensus 188 --~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 188 --VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp --CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred --cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 0168899999999999954 445889999999999999999 56778899999999999999998 677888899999
Q ss_pred cceeecccC-cceecCCCC
Q 039161 241 LALLNLSYN-RLWGRIPRG 258 (333)
Q Consensus 241 L~~L~l~~N-~l~~~~p~~ 258 (333)
|+.++++++ .++|..|..
T Consensus 264 L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 264 VQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HHHHHHHHHHHHHSSSSCC
T ss_pred ceEEECCCchhccCCchhc
Confidence 999999954 677666554
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=7e-26 Score=206.83 Aligned_cols=215 Identities=21% Similarity=0.211 Sum_probs=179.0
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
.++ +|++|+|++|.+++..| |.++++|++|+|++|.+++.. ..++|++|++++|.+++..+. .+++|++
T Consensus 56 ~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~ 124 (487)
T 3oja_A 56 PFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKN 124 (487)
T ss_dssp TCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCCCEEEC---CCSSCEE
T ss_pred CCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcCCcCCCCCcc---ccCCCCE
Confidence 456 89999999999997776 899999999999999998533 338999999999999976554 4588999
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchh
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQ 161 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (333)
|++++|.+++..+..+ ..+++|++|++++|.+++..|..+...+++|+.|++.+|.-.-.. .
T Consensus 125 L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~------------~---- 186 (487)
T 3oja_A 125 IYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK------------G---- 186 (487)
T ss_dssp EECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE------------C----
T ss_pred EECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc------------c----
Confidence 9999999999877766 778999999999999998888776668899999998876421100 0
Q ss_pred hhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCC-CCCCCCccccCc
Q 039161 162 LQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD-GRIPEQLLSVTA 240 (333)
Q Consensus 162 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 240 (333)
...++.|+.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp -CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred -cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 0017899999999999996555 48899999999999999995 6777899999999999999998 566777788888
Q ss_pred cceeeccc
Q 039161 241 LALLNLSY 248 (333)
Q Consensus 241 L~~L~l~~ 248 (333)
++.++++.
T Consensus 264 L~~l~~~~ 271 (487)
T 3oja_A 264 VQTVAKQT 271 (487)
T ss_dssp HHHHHHHH
T ss_pred CcEEeccc
Confidence 88888763
No 70
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=5.2e-24 Score=178.00 Aligned_cols=162 Identities=20% Similarity=0.261 Sum_probs=134.8
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
+|++++.|+|++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 55689999999999999999999999999999999999999888889999999999999999998777889999999999
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhh
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQL 162 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (333)
++++|++++.++..+ ..+++|++|++++|.
T Consensus 113 ~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~------------------------------------------------ 142 (251)
T 3m19_A 113 YLGGNQLKSLPSGVF--DRLTKLKELRLNTNQ------------------------------------------------ 142 (251)
T ss_dssp ECCSSCCCCCCTTTT--TTCTTCCEEECCSSC------------------------------------------------
T ss_pred EcCCCcCCCcChhHh--ccCCcccEEECcCCc------------------------------------------------
Confidence 999999987776554 445555555555554
Q ss_pred hhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCC
Q 039161 163 QNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 230 (333)
Q Consensus 163 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 230 (333)
+++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 143 ----------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 143 ----------------LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ----------------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ----------------CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 4434445566778888888888888877777788888888888888888754
No 71
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=3.5e-24 Score=195.04 Aligned_cols=235 Identities=20% Similarity=0.320 Sum_probs=134.1
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
++ +|++|++++|.+++..+ +.++++|++|++++|.+++..+ +.++++|++|++++|.+++..+ +..+++|++|
T Consensus 67 l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 139 (466)
T 1o6v_A 67 LN-NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139 (466)
T ss_dssp CT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hc-CCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence 44 78899999998886655 8888889999999888885444 8888888888888888885432 7788888888
Q ss_pred EcccCcCCCCCCCC-----------------CCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccc-ccc
Q 039161 83 VLRSNQFDCPPCNS-----------------NITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEY-MGR 144 (333)
Q Consensus 83 ~L~~n~l~~~~~~~-----------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~-~~~ 144 (333)
++++|.+.+..... .....+++|++|++++|.+++. + .+..+++|+.+++.++... +..
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-S--VLAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCCCGG
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-h--hhccCCCCCEEEecCCccccccc
Confidence 88888776543100 0124567778888888877643 2 1555666666666554311 100
Q ss_pred -ccccCceEEeecC---cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEE
Q 039161 145 -AFCDESITVAMKG---HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL 220 (333)
Q Consensus 145 -~~~~~~~~~~~~~---~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 220 (333)
............. ........+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 292 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeE
Confidence 0000000000000 000112224555666666665553333 4455555555555555553322 4445555555
Q ss_pred eCCCCcCCCCCCCCccccCccceeecccCccee
Q 039161 221 DLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 253 (333)
Q Consensus 221 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 253 (333)
++++|.+++..+ +..+++|+.|++++|++++
T Consensus 293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred EcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 555555543222 3444445555555554443
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=4.1e-24 Score=183.93 Aligned_cols=190 Identities=17% Similarity=0.245 Sum_probs=153.6
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+|++|++++|.++.. + .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 688888888888753 3 577888888888888888854 33 88888888888888888753 367888888888888
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|++++..+ + ..+++|++|++++|.+++..+ + ..
T Consensus 116 ~n~l~~~~~--l--~~l~~L~~L~l~~n~l~~~~~---l---------------------------------------~~ 149 (308)
T 1h6u_A 116 STQITDVTP--L--AGLSNLQVLYLDLNQITNISP---L---------------------------------------AG 149 (308)
T ss_dssp TSCCCCCGG--G--TTCTTCCEEECCSSCCCCCGG---G---------------------------------------GG
T ss_pred CCCCCCchh--h--cCCCCCCEEECCCCccCcCcc---c---------------------------------------cC
Confidence 888877653 2 678888888888888774322 1 11
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|+
T Consensus 150 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~ 223 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEE
T ss_pred CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEE
Confidence 6789999999999985444 8899999999999999996544 8899999999999999996553 78899999999
Q ss_pred cccCccee
Q 039161 246 LSYNRLWG 253 (333)
Q Consensus 246 l~~N~l~~ 253 (333)
+++|++++
T Consensus 224 l~~N~i~~ 231 (308)
T 1h6u_A 224 LTNQTITN 231 (308)
T ss_dssp EEEEEEEC
T ss_pred ccCCeeec
Confidence 99999974
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.3e-23 Score=190.30 Aligned_cols=205 Identities=16% Similarity=0.149 Sum_probs=133.1
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
++ +|++|++++|.+++. | .|..+++|++|++++|++++. | +..+++|++|++++|.+++. + +..+++|++|
T Consensus 41 l~-~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 41 LA-TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HT-TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred cC-CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 45 799999999999975 4 688999999999999999864 4 88899999999999999864 3 8889999999
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc--cccccccc--CceEEeecCc
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE--YMGRAFCD--ESITVAMKGH 158 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~--~~~~~~~~--~~~~~~~~~~ 158 (333)
++++|++++.+ + ..+++|++|++++|.+++. + +..+++|+.+++..+.. .+...... ....+..+..
T Consensus 112 ~L~~N~l~~l~---~--~~l~~L~~L~l~~N~l~~l-~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 112 NCDTNKLTKLD---V--SQNPLLTYLNCARNTLTEI-D---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp ECCSSCCSCCC---C--TTCTTCCEEECTTSCCSCC-C---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCeec---C--CCCCcCCEEECCCCcccee-c---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcc
Confidence 99999998763 3 6788999999999998863 3 56677777777766521 11000000 0000000000
Q ss_pred chhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCC
Q 039161 159 DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 231 (333)
Q Consensus 159 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 231 (333)
.......++.|+.|++++|++++. .+..+++|++|++++|++++ +| ++.+++|+.|++++|.+++..
T Consensus 183 ~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 183 TELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 000012244555555555555532 24455555555555555554 23 445555555555555555443
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2e-23 Score=190.10 Aligned_cols=211 Identities=18% Similarity=0.229 Sum_probs=96.1
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+|++|++++|.+++. ..+..+++|++|++++|.+++..| +..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 251 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence 344444444444432 124444444444444444443222 33444444444444444421 234444444444444
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|.+.+..+ + ..+++|++|++++|.+++..+ +..+++|+.+++.++... ... ....
T Consensus 252 ~n~l~~~~~--~--~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~---------------~~~--~~~~ 307 (466)
T 1o6v_A 252 NNQISNLAP--L--SGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLE---------------DIS--PISN 307 (466)
T ss_dssp SSCCCCCGG--G--TTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCS---------------CCG--GGGG
T ss_pred CCccccchh--h--hcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCccc---------------Cch--hhcC
Confidence 444444332 1 334444455554444443221 333444444444332100 000 0122
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
+++|+.|++++|++++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..| +..+++|+.|+
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 381 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEe
Confidence 4555555555555554433 44555555555555555543 244555555555555555554444 45555555555
Q ss_pred cccCcce
Q 039161 246 LSYNRLW 252 (333)
Q Consensus 246 l~~N~l~ 252 (333)
+++|+++
T Consensus 382 l~~n~~~ 388 (466)
T 1o6v_A 382 LNDQAWT 388 (466)
T ss_dssp CCCEEEE
T ss_pred ccCCccc
Confidence 5555555
No 75
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.9e-23 Score=189.16 Aligned_cols=233 Identities=16% Similarity=0.105 Sum_probs=153.3
Q ss_pred CCcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCE
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKI 81 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (333)
.++ +|++|++++|.+++. + ++.+++|++|++++|.+++. + +.++++|++|++++|.+++ ++ +..+++|++
T Consensus 62 ~l~-~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~ 131 (457)
T 3bz5_A 62 KLT-GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY 131 (457)
T ss_dssp GCT-TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred ccC-CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence 345 799999999999875 3 78889999999999999864 3 7888999999999999886 33 788889999
Q ss_pred EEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccC--ceEEeecCc
Q 039161 82 LVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDE--SITVAMKGH 158 (333)
Q Consensus 82 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~--~~~~~~~~~ 158 (333)
|++++|++++.. + ..+++|++|++++|...+.++ +..+++|+.+++..+.- .++...... ...+..+..
T Consensus 132 L~l~~N~l~~l~---l--~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 132 LNCARNTLTEID---V--SHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp EECTTSCCSCCC---C--TTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred EECCCCccceec---c--ccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceeccccCCCCCEEECcCCcC
Confidence 999999888753 2 556777777777775444442 45566666666655431 111111100 001111110
Q ss_pred chhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCC-------CCcEEeCCCCcCCCCC
Q 039161 159 DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT-------ALESLDLSFNKLDGRI 231 (333)
Q Consensus 159 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~l~~~~ 231 (333)
.......+++|+.|++++|++++ +| +..+++|+.|++++|++++..+..+..++ +|+.|++++|.+.+.+
T Consensus 204 ~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 204 TKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280 (457)
T ss_dssp SCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred CeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcc
Confidence 00012336889999999999986 55 77889999999999999876554444333 3445555555544444
Q ss_pred CCCccccCccceeecccCcceecCCC
Q 039161 232 PEQLLSVTALALLNLSYNRLWGRIPR 257 (333)
Q Consensus 232 ~~~~~~l~~L~~L~l~~N~l~~~~p~ 257 (333)
| +..+++|+.|++++|...+.+|.
T Consensus 281 ~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 281 Q--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp E--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred c--ccccccCCEEECCCCcccceecc
Confidence 3 34556677777777766555553
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=2.3e-24 Score=178.82 Aligned_cols=192 Identities=15% Similarity=0.198 Sum_probs=161.1
Q ss_pred cccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCc-CCCcccccccCCCCCCEEEccc-CcCCCCCC
Q 039161 17 LEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM-ISDSFPCWMGSLSELKILVLRS-NQFDCPPC 94 (333)
Q Consensus 17 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~ 94 (333)
++ .+|. +. +++++|++++|++++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.++..++
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 55 3444 43 489999999999998777789999999999999997 8876667899999999999998 99998887
Q ss_pred CCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccc---e
Q 039161 95 NSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFR---A 171 (333)
Q Consensus 95 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---~ 171 (333)
..+ ..+++|++|++++|.+++ +|. +.. +++|+ +
T Consensus 99 ~~f--~~l~~L~~L~l~~n~l~~-lp~--~~~---------------------------------------l~~L~~L~~ 134 (239)
T 2xwt_C 99 DAL--KELPLLKFLGIFNTGLKM-FPD--LTK---------------------------------------VYSTDIFFI 134 (239)
T ss_dssp TSE--ECCTTCCEEEEEEECCCS-CCC--CTT---------------------------------------CCBCCSEEE
T ss_pred HHh--CCCCCCCEEeCCCCCCcc-ccc--ccc---------------------------------------ccccccccE
Confidence 766 789999999999999985 553 222 34444 9
Q ss_pred EEccCc-ccCccchhhhhCCCCCC-EEEccCCcCCCCCccccccCCCCcEEeCCCCc-CCCCCCCCcccc-Cccceeecc
Q 039161 172 MDFSSN-RFHGEISEVLGNFKSLK-VLNLSHNSLTGNIPVSFENMTALESLDLSFNK-LDGRIPEQLLSV-TALALLNLS 247 (333)
Q Consensus 172 L~ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~l~ 247 (333)
|++++| .+++..+..|..+++|+ +|++++|.++...+..+.. ++|+.|++++|+ +++..+..|..+ ++|+.|+++
T Consensus 135 L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp EEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred EECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 999999 99977777899999999 9999999999555555655 899999999995 997777889999 999999999
Q ss_pred cCcceecCCCC
Q 039161 248 YNRLWGRIPRG 258 (333)
Q Consensus 248 ~N~l~~~~p~~ 258 (333)
+|+++ .+|..
T Consensus 214 ~N~l~-~l~~~ 223 (239)
T 2xwt_C 214 QTSVT-ALPSK 223 (239)
T ss_dssp TCCCC-CCCCT
T ss_pred CCccc-cCChh
Confidence 99998 55554
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=5.6e-24 Score=183.38 Aligned_cols=205 Identities=21% Similarity=0.169 Sum_probs=165.9
Q ss_pred cccEEECcCCccccccchhh--hCCCCccEEECCCCcCcCCCC----hhhcCCCCCcEEEccCCcCCCcccccccCCCCC
Q 039161 6 ELITLHLENNSLEGHIHNTF--ANASHLRSLDLYSNKLEGPLP----RSLAKYIKLEVVNVENNMISDSFPCWMGSLSEL 79 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 79 (333)
+|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 69999999999999998888 889999999999999997655 345678999999999999998888899999999
Q ss_pred CEEEcccCcCCCC--CCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecC
Q 039161 80 KILVLRSNQFDCP--PCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKG 157 (333)
Q Consensus 80 ~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (333)
++|++++|++.+. .+.......+++|++|++++|.++. ++...
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~---------------------------------- 216 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVC---------------------------------- 216 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHH----------------------------------
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHH----------------------------------
Confidence 9999999997642 1111112578899999999998862 22110
Q ss_pred cchhhhhhhhccceEEccCcccCccchhhhhCC---CCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCC
Q 039161 158 HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNF---KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ 234 (333)
Q Consensus 158 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 234 (333)
......++.|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|+|++|.+++. |.
T Consensus 217 --~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~- 289 (310)
T 4glp_A 217 --AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ- 289 (310)
T ss_dssp --HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-
T ss_pred --HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-
Confidence 0011226889999999999998777777766 69999999999999 5676664 8999999999999954 43
Q ss_pred ccccCccceeecccCcce
Q 039161 235 LLSVTALALLNLSYNRLW 252 (333)
Q Consensus 235 ~~~l~~L~~L~l~~N~l~ 252 (333)
+..+++|+.|++++|+++
T Consensus 290 ~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTSCCCCSCEECSSTTTS
T ss_pred hhhCCCccEEECcCCCCC
Confidence 677899999999999996
No 78
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.2e-22 Score=183.80 Aligned_cols=229 Identities=26% Similarity=0.337 Sum_probs=130.3
Q ss_pred cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161 4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV 83 (333)
Q Consensus 4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 83 (333)
|++|++|++++|.+++ +| .|+++++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .+..+++|++|+
T Consensus 130 ~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 130 PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 3467777777777775 44 47777777777777777774 44332 467777777777765 44 467777777777
Q ss_pred cccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccCceEEeecCc-chh
Q 039161 84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDESITVAMKGH-DFQ 161 (333)
Q Consensus 84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~ 161 (333)
+++|.+++.+. ..++|++|++++|.++ .+|. +..+++|+.+++.++.- .++... ........... ...
T Consensus 202 l~~N~l~~l~~------~~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l~~~~-~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 202 ADNNSLKKLPD------LPLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTLPDLP-PSLEALNVRDNYLTD 271 (454)
T ss_dssp CCSSCCSSCCC------CCTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSCCSCC-TTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCC------CcCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCcccccc-cccCEEECCCCcccc
Confidence 77777766432 1246677777777666 4553 55666677766665431 111100 00000000000 000
Q ss_pred hhhhhhccceEEccCcccCc--cchhh-------------hhCC-CCCCEEEccCCcCCCCCccccccCCCCcEEeCCCC
Q 039161 162 LQNIFVMFRAMDFSSNRFHG--EISEV-------------LGNF-KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 225 (333)
Q Consensus 162 ~~~~~~~L~~L~ls~n~l~~--~~~~~-------------~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 225 (333)
+...+++|+.|++++|.+++ ..|.. +..+ ++|++|++++|++++ +|.. +++|+.|++++|
T Consensus 272 l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N 347 (454)
T 1jl5_A 272 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN 347 (454)
T ss_dssp CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCC
Confidence 11112344555555554443 11111 1112 467777777777774 4433 467888888888
Q ss_pred cCCCCCCCCccccCccceeecccCccee--cCCCC
Q 039161 226 KLDGRIPEQLLSVTALALLNLSYNRLWG--RIPRG 258 (333)
Q Consensus 226 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~p~~ 258 (333)
.++ .+|. .+++|+.|++++|++++ .+|..
T Consensus 348 ~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 348 HLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp CCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred ccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 877 4555 35778888888888876 56654
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.3e-24 Score=191.46 Aligned_cols=238 Identities=14% Similarity=0.187 Sum_probs=125.5
Q ss_pred cCcccEEECcCCccccccc----hhhhCCC-CccEEECCCCcCcCCCChhhcCC-----CCCcEEEccCCcCCCcccccc
Q 039161 4 STELITLHLENNSLEGHIH----NTFANAS-HLRSLDLYSNKLEGPLPRSLAKY-----IKLEVVNVENNMISDSFPCWM 73 (333)
Q Consensus 4 ~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~ 73 (333)
+++|++|+|++|.+++..+ ..|.+++ +|++|+|++|.+++..+..+..+ ++|++|+|++|.+++..+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4457777777777776666 6666677 77777777777776666666554 777777777777775555433
Q ss_pred ----cCC-CCCCEEEcccCcCCCCCCCCCC--ccc-CCcccEEEcCCCcccccCCcccc---cCh-HHhhhhcccCcccc
Q 039161 74 ----GSL-SELKILVLRSNQFDCPPCNSNI--TFP-FQALRIIDLSHTEFTGFLPRRIF---PSM-EAMKNVDEQGRLEY 141 (333)
Q Consensus 74 ----~~l-~~L~~L~L~~n~l~~~~~~~~~--~~~-l~~L~~L~ls~n~l~~~~~~~~~---~~l-~~L~~l~~~~~~~~ 141 (333)
..+ ++|++|++++|.+++..+..+. ... .++|++|++++|.+++.....+. ... .+|+.+++.++...
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 333 6777777777777655433220 011 24777777777777643322211 111 14444444433210
Q ss_pred cccccccCceEEeecCcchhhhhhh-hccceEEccCcccCcc----chhhhhC-CCCCCEEEccCCcCCCCCc----ccc
Q 039161 142 MGRAFCDESITVAMKGHDFQLQNIF-VMFRAMDFSSNRFHGE----ISEVLGN-FKSLKVLNLSHNSLTGNIP----VSF 211 (333)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~~----~~~ 211 (333)
-... .......... ++|++|++++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+
T Consensus 181 ~~~~-----------~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 181 SKNC-----------AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp GSCH-----------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred hhhH-----------HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 0000 0000000112 3566666666665532 2333333 2356666666666654433 223
Q ss_pred ccCCCCcEEeCCCCcCCCC-------CCCCccccCccceeecccCcce
Q 039161 212 ENMTALESLDLSFNKLDGR-------IPEQLLSVTALALLNLSYNRLW 252 (333)
Q Consensus 212 ~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~l~~N~l~ 252 (333)
..+++|+.|++++|.+.+. ++..+..+++|+.||+++|++.
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 4455566666666653321 2223445555666666666654
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.4e-25 Score=197.86 Aligned_cols=241 Identities=16% Similarity=0.209 Sum_probs=175.4
Q ss_pred cccEEECcCCccccccchh----hhCCCCccEEECCCC---cCcCCCChhh-------cCCCCCcEEEccCCcCCC----
Q 039161 6 ELITLHLENNSLEGHIHNT----FANASHLRSLDLYSN---KLEGPLPRSL-------AKYIKLEVVNVENNMISD---- 67 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n---~l~~~~p~~~-------~~l~~L~~L~L~~n~l~~---- 67 (333)
+|++|+|++|.+++..+.. |..+++|++|+|++| .+++.+|..+ ..+++|++|+|++|.+++
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 7999999999998765544 668999999999996 4455566555 688999999999999987
Q ss_pred cccccccCCCCCCEEEcccCcCCCCCCCCCC--cccC---------CcccEEEcCCCcccc-cCCc--ccccChHHhhhh
Q 039161 68 SFPCWMGSLSELKILVLRSNQFDCPPCNSNI--TFPF---------QALRIIDLSHTEFTG-FLPR--RIFPSMEAMKNV 133 (333)
Q Consensus 68 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~l---------~~L~~L~ls~n~l~~-~~~~--~~~~~l~~L~~l 133 (333)
.++..+..+++|++|+|++|.++...+..+. ...+ ++|++|++++|.++. .++. ..+..+++|+.+
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 3667788899999999999988643322210 0122 899999999999873 3331 124455667777
Q ss_pred cccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccC----ccchhhhhCCCCCCEEEccCCcCCCC---
Q 039161 134 DEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFH----GEISEVLGNFKSLKVLNLSHNSLTGN--- 206 (333)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~--- 206 (333)
++.++...-... ..........+++|+.|++++|.++ ..+|..+..+++|++|+|++|.+++.
T Consensus 193 ~L~~n~l~~~g~----------~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 193 KMVQNGIRPEGI----------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp ECCSSCCCHHHH----------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred ECcCCCCCHhHH----------HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 776653110000 0000001223688999999999986 56788889999999999999999865
Q ss_pred -Ccccc--ccCCCCcEEeCCCCcCCC----CCCCCc-cccCccceeecccCcceecCC
Q 039161 207 -IPVSF--ENMTALESLDLSFNKLDG----RIPEQL-LSVTALALLNLSYNRLWGRIP 256 (333)
Q Consensus 207 -~~~~~--~~l~~L~~L~Ls~n~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~p 256 (333)
++..+ +.+++|++|+|++|.+++ .+|..+ ..+++|+.|++++|++++..|
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 45555 338999999999999996 377766 568999999999999985543
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=4.3e-23 Score=180.82 Aligned_cols=194 Identities=16% Similarity=0.147 Sum_probs=107.6
Q ss_pred CcCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCC-hhhcCCCCCcE-EEccCCcCCCcccccccCCCCCC
Q 039161 3 FSTELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLP-RSLAKYIKLEV-VNVENNMISDSFPCWMGSLSELK 80 (333)
Q Consensus 3 l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~ 80 (333)
+|+++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+| .+|.+++++++ +++..|+++...|..|..+++|+
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 34566667777777665555666667777777777766644333 35566666554 44555666655566666666777
Q ss_pred EEEcccCcCCCCCCCCCCcccCCcccEEEcCC-CcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcc
Q 039161 81 ILVLRSNQFDCPPCNSNITFPFQALRIIDLSH-TEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHD 159 (333)
Q Consensus 81 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (333)
+|++++|++...++..+ ....++..+++.+ +.+. .++...+..+
T Consensus 108 ~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~-~l~~~~f~~~-------------------------------- 152 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIH-TIERNSFVGL-------------------------------- 152 (350)
T ss_dssp EEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCC-EECTTSSTTS--------------------------------
T ss_pred cccccccccccCCchhh--cccchhhhhhhccccccc-cccccchhhc--------------------------------
Confidence 77777766666655444 4445566666644 3343 3332222221
Q ss_pred hhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccC-CcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCcccc
Q 039161 160 FQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSH-NSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV 238 (333)
Q Consensus 160 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 238 (333)
...++.|++++|+++...+..+ ...+|+++++++ |.++.+.+..|.++++|+.||+++|+|+...+..+..+
T Consensus 153 ------~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L 225 (350)
T 4ay9_X 153 ------SFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225 (350)
T ss_dssp ------BSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTC
T ss_pred ------chhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccc
Confidence 2345556666666663333333 334566666653 44554444455666666666666666664333333333
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=4.6e-22 Score=185.56 Aligned_cols=223 Identities=23% Similarity=0.244 Sum_probs=120.8
Q ss_pred CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEc
Q 039161 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVL 84 (333)
Q Consensus 5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 84 (333)
++|++|++++|.++.. |. .+++|++|+|++|++++ +|. .+++|++|++++|.+++ +|. .+++|+.|++
T Consensus 61 ~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 4566666666666633 22 35666666666666663 443 45566666666666653 222 3455555555
Q ss_pred ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCccccc-----------------ChHHhhhhcccCccc-cccccc
Q 039161 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFP-----------------SMEAMKNVDEQGRLE-YMGRAF 146 (333)
Q Consensus 85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-----------------~l~~L~~l~~~~~~~-~~~~~~ 146 (333)
++|+++..+. .+++|++|++++|.+++ +|.. .. .+++|+.+++.+|.. .++...
T Consensus 129 ~~N~l~~lp~------~l~~L~~L~Ls~N~l~~-l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~ 200 (622)
T 3g06_A 129 FGNQLTSLPV------LPPGLQELSVSDNQLAS-LPAL-PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLP 200 (622)
T ss_dssp CSSCCSCCCC------CCTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC
T ss_pred CCCCCCcCCC------CCCCCCEEECcCCcCCC-cCCc-cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCcc
Confidence 5555554332 13556666666665553 2211 11 113344444443321 111000
Q ss_pred ccCceEEeecC-cchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCC
Q 039161 147 CDESITVAMKG-HDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 225 (333)
Q Consensus 147 ~~~~~~~~~~~-~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 225 (333)
.......... ....+...+++|+.|++++|++++ +| ..+++|+.|++++|.++. +|. .+++|+.|+|++|
T Consensus 201 -~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 201 -SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp -TTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred -chhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCC
Confidence 0000000000 000111224667777777777774 44 345677788888887773 443 4577888888888
Q ss_pred cCCCCCCCCccccCccceeecccCcceecCCC
Q 039161 226 KLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 257 (333)
Q Consensus 226 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 257 (333)
.++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 272 ~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 887 6677777888888888888888766554
No 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=6e-22 Score=179.18 Aligned_cols=226 Identities=21% Similarity=0.274 Sum_probs=113.7
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCC------------------
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISD------------------ 67 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------------ 67 (333)
+|++|++++|++++ +|.. ..+|++|++++|++++ +| .+.++++|++|++++|.+++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 227 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcC
Confidence 56666666666654 2322 2355555665555553 33 35555555555555555543
Q ss_pred -cccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccc
Q 039161 68 -SFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRA 145 (333)
Q Consensus 68 -~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~ 145 (333)
.+| .+..+++|++|++++|++++.+. ..++|++|++++|.+++ +|.. .++|+.+++.++.- .++..
T Consensus 228 ~~lp-~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l~~~ 295 (454)
T 1jl5_A 228 EELP-ELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENIFSGLSEL 295 (454)
T ss_dssp SSCC-CCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSEESCC
T ss_pred Cccc-ccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcccc-cCcc----cCcCCEEECcCCccCcccCc
Confidence 233 24445555555555555544321 12445555555555543 2221 24455555544321 11100
Q ss_pred cccCceEEeecCc-chhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCC
Q 039161 146 FCDESITVAMKGH-DFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSF 224 (333)
Q Consensus 146 ~~~~~~~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 224 (333)
............ ...+...+++|++|++++|++++ +|.. +++|++|++++|++++ +|. .+++|++|++++
T Consensus 296 -~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~ 366 (454)
T 1jl5_A 296 -PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEY 366 (454)
T ss_dssp -CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred -CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCC
Confidence 000001111100 00111223689999999999985 5543 5899999999999994 555 478999999999
Q ss_pred CcCCC--CCCCCcccc-------------CccceeecccCccee--cCCCC
Q 039161 225 NKLDG--RIPEQLLSV-------------TALALLNLSYNRLWG--RIPRG 258 (333)
Q Consensus 225 n~l~~--~~~~~~~~l-------------~~L~~L~l~~N~l~~--~~p~~ 258 (333)
|.+++ .+|..+..+ ++|+.|++++|++++ .+|..
T Consensus 367 N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 367 NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp SCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred CCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence 99998 688888877 789999999999997 77764
No 84
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=3.6e-22 Score=184.16 Aligned_cols=183 Identities=25% Similarity=0.338 Sum_probs=144.6
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67888888888886 44433 377888888888888 566 456788888888888886 565 554 88888888
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|++++++. .+++|+.|++++|.+++ +|..
T Consensus 129 ~N~l~~lp~------~l~~L~~L~Ls~N~l~~-lp~~------------------------------------------- 158 (571)
T 3cvr_A 129 NNQLTMLPE------LPALLEYINADNNQLTM-LPEL------------------------------------------- 158 (571)
T ss_dssp SSCCSCCCC------CCTTCCEEECCSSCCSC-CCCC-------------------------------------------
T ss_pred CCcCCCCCC------cCccccEEeCCCCccCc-CCCc-------------------------------------------
Confidence 888887553 36788888888888874 4431
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCC-------cEEeCCCCcCCCCCCCCcccc
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL-------ESLDLSFNKLDGRIPEQLLSV 238 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l 238 (333)
+++|+.|++++|.+++ +|. +. ++|+.|+|++|.++ .+|. +.. +| +.|+|++|.|+ .+|..+..+
T Consensus 159 l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l 229 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL 229 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence 5788999999999996 666 65 89999999999999 5555 554 77 99999999999 678888889
Q ss_pred CccceeecccCcceecCCCC
Q 039161 239 TALALLNLSYNRLWGRIPRG 258 (333)
Q Consensus 239 ~~L~~L~l~~N~l~~~~p~~ 258 (333)
++|+.|++++|++++.+|..
T Consensus 230 ~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CTTEEEECCSSSCCHHHHHH
T ss_pred CCCCEEEeeCCcCCCcCHHH
Confidence 99999999999999877753
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=3.7e-22 Score=171.69 Aligned_cols=188 Identities=17% Similarity=0.293 Sum_probs=154.6
Q ss_pred EECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcC
Q 039161 10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQF 89 (333)
Q Consensus 10 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 89 (333)
+.+..+.+++... +..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++
T Consensus 24 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 24 IAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence 3455556654333 4568899999999999984 55 68899999999999999996544 89999999999999999
Q ss_pred CCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhcc
Q 039161 90 DCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMF 169 (333)
Q Consensus 90 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 169 (333)
++.. .+ ..+++|++|++++|.+++. +. +.. +++|
T Consensus 98 ~~~~--~~--~~l~~L~~L~l~~n~l~~~-~~--l~~---------------------------------------l~~L 131 (308)
T 1h6u_A 98 KNVS--AI--AGLQSIKTLDLTSTQITDV-TP--LAG---------------------------------------LSNL 131 (308)
T ss_dssp SCCG--GG--TTCTTCCEEECTTSCCCCC-GG--GTT---------------------------------------CTTC
T ss_pred CCch--hh--cCCCCCCEEECCCCCCCCc-hh--hcC---------------------------------------CCCC
Confidence 8764 23 7789999999999998853 21 111 6789
Q ss_pred ceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccC
Q 039161 170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 249 (333)
Q Consensus 170 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N 249 (333)
++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|
T Consensus 132 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 132 QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN 205 (308)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTS
T ss_pred CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCC
Confidence 999999999985544 8899999999999999996544 8899999999999999996544 788999999999999
Q ss_pred cceecC
Q 039161 250 RLWGRI 255 (333)
Q Consensus 250 ~l~~~~ 255 (333)
++++..
T Consensus 206 ~l~~~~ 211 (308)
T 1h6u_A 206 QISDVS 211 (308)
T ss_dssp CCCBCG
T ss_pred ccCccc
Confidence 998544
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=3.8e-22 Score=161.81 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=67.6
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++++.|+
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~ 171 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLS 171 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHH
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHH
Confidence 4556666777777765556667788888899999888887777778888899999999997764 356788999
Q ss_pred cccCcceecCCCC
Q 039161 246 LSYNRLWGRIPRG 258 (333)
Q Consensus 246 l~~N~l~~~~p~~ 258 (333)
++.|.++|.+|..
T Consensus 172 ~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 172 EWINKHSGVVRNS 184 (208)
T ss_dssp HHHHHCTTTBBCT
T ss_pred HHHHhCCceeecc
Confidence 9999999988864
No 87
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=8.7e-22 Score=159.72 Aligned_cols=182 Identities=16% Similarity=0.186 Sum_probs=145.3
Q ss_pred ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS 86 (333)
Q Consensus 7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 86 (333)
-+.++.+++.++.. |..+ .++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 9 ~~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 46778888888744 3333 46899999999999977777788899999999999999876666788899999999999
Q ss_pred CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhh
Q 039161 87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIF 166 (333)
Q Consensus 87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (333)
|++++.++..+ ..+++|++|++++|.+++..+ ..+.. +
T Consensus 86 n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~-~~~~~---------------------------------------l 123 (208)
T 2o6s_A 86 NQLQSLPNGVF--DKLTQLKELALNTNQLQSLPD-GVFDK---------------------------------------L 123 (208)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT-TTTTT---------------------------------------C
T ss_pred CcCCccCHhHh--cCccCCCEEEcCCCcCcccCH-hHhcc---------------------------------------C
Confidence 99988877665 778899999999998884333 22221 5
Q ss_pred hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCc
Q 039161 167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240 (333)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 240 (333)
++|++|++++|++++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|.+++.+|..++.++.
T Consensus 124 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 778899999999987777778889999999999998774 4567889999999999988887776553
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.8e-23 Score=182.29 Aligned_cols=224 Identities=17% Similarity=0.149 Sum_probs=139.3
Q ss_pred cccEEECcCCccccccchhhhCC--CCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCc-ccccccCCCCCCEE
Q 039161 6 ELITLHLENNSLEGHIHNTFANA--SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDS-FPCWMGSLSELKIL 82 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 82 (333)
.++.++++++.+. +..+..+ ++++.|++++|.+++..+. +..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3566777776655 3445555 6677777777777655444 44567777777777776644 55566667777777
Q ss_pred EcccCcCCCCCCCCCCcccCCcccEEEcCCC-cccccCCcccccChHHhhhhcccCc-ccccccccccCceEEeecCcch
Q 039161 83 VLRSNQFDCPPCNSNITFPFQALRIIDLSHT-EFTGFLPRRIFPSMEAMKNVDEQGR-LEYMGRAFCDESITVAMKGHDF 160 (333)
Q Consensus 83 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~L~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 160 (333)
++++|.+++..+..+ ..+++|++|++++| .+++......+..+++|+.+++.++ ...- ....
T Consensus 124 ~L~~~~l~~~~~~~l--~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~--------------~~~~ 187 (336)
T 2ast_B 124 SLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE--------------KHVQ 187 (336)
T ss_dssp ECTTCBCCHHHHHHH--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH--------------HHHH
T ss_pred eCcCcccCHHHHHHH--hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh--------------HHHH
Confidence 777776654433333 44667777777776 4553211223445556666665543 1000 0001
Q ss_pred hhhhhhh-ccceEEccCc--ccC-ccchhhhhCCCCCCEEEccCCc-CCCCCccccccCCCCcEEeCCCCc-CCCCCCCC
Q 039161 161 QLQNIFV-MFRAMDFSSN--RFH-GEISEVLGNFKSLKVLNLSHNS-LTGNIPVSFENMTALESLDLSFNK-LDGRIPEQ 234 (333)
Q Consensus 161 ~~~~~~~-~L~~L~ls~n--~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 234 (333)
.....++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 1223356 8888888888 454 3556667778888888888887 666667777788888888888884 33222235
Q ss_pred ccccCccceeecccC
Q 039161 235 LLSVTALALLNLSYN 249 (333)
Q Consensus 235 ~~~l~~L~~L~l~~N 249 (333)
+..+++|+.|++++|
T Consensus 268 l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGCTTCCEEECTTS
T ss_pred HhcCCCCCEEeccCc
Confidence 667788888888887
No 89
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=6.7e-21 Score=177.71 Aligned_cols=238 Identities=21% Similarity=0.236 Sum_probs=156.2
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
.+++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|.++. +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 5889999999999 5565554 89999999999999 4665 57899999999999984 554 67999999999
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccc-ccccccccCceEEeecC-cchhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLE-YMGRAFCDESITVAMKG-HDFQLQ 163 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 163 (333)
+|.+++.+. .+++|+.|++++|.++. +|.. +++|+.|++..|.. .++.. ......+.... ....+.
T Consensus 110 ~N~l~~l~~------~l~~L~~L~L~~N~l~~-lp~~----l~~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 110 SNPLTHLPA------LPSGLCKLWIFGNQLTS-LPVL----PPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp SCCCCCCCC------CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCCC
T ss_pred CCcCCCCCC------CCCCcCEEECCCCCCCc-CCCC----CCCCCEEECcCCcCCCcCCc-cCCCCEEECCCCCCCCCc
Confidence 999998764 46899999999999984 5543 37788888876632 11111 11100110000 000011
Q ss_pred hhhhccceEEccCcccCccchhhhh-----------------CCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCc
Q 039161 164 NIFVMFRAMDFSSNRFHGEISEVLG-----------------NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 226 (333)
Q Consensus 164 ~~~~~L~~L~ls~n~l~~~~~~~~~-----------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 226 (333)
..+++|+.|++++|.+++ +|..+. .+++|+.|++++|.+++ +| ..+++|+.|++++|.
T Consensus 178 ~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNR 252 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC
T ss_pred ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCC
Confidence 224556666666666653 222111 12567777777777774 34 345778888888888
Q ss_pred CCCCCCCCccccCccceeecccCcceecCCCCCccCCccccccccccCCCCCCCC
Q 039161 227 LDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLT 281 (333)
Q Consensus 227 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~ 281 (333)
++ .+|. .+++|+.|++++|.++ .+|.. +........+.+.+|++.
T Consensus 253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~-----l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPES-----LIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CS-CCCC---CCTTCCEEECCSSCCC-SCCGG-----GGGSCTTCEEECCSCCCC
T ss_pred CC-cCCc---ccccCcEEeCCCCCCC-cCCHH-----HhhccccCEEEecCCCCC
Confidence 87 4554 4577888888888887 66642 222233344455566554
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=5e-23 Score=181.29 Aligned_cols=264 Identities=16% Similarity=0.133 Sum_probs=185.7
Q ss_pred EEECcCCccccccchhhhCCCCccEEECCCCcCcCCCC----hhhcCCC-CCcEEEccCCcCCCcccccccCC-----CC
Q 039161 9 TLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLP----RSLAKYI-KLEVVNVENNMISDSFPCWMGSL-----SE 78 (333)
Q Consensus 9 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 78 (333)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..|..++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46899999999999888777789999999999997777 7788898 89999999999998777767664 99
Q ss_pred CCEEEcccCcCCCCCCCCCC--cccC-CcccEEEcCCCcccccCCccccc---C-hHHhhhhcccCcccccccccccCce
Q 039161 79 LKILVLRSNQFDCPPCNSNI--TFPF-QALRIIDLSHTEFTGFLPRRIFP---S-MEAMKNVDEQGRLEYMGRAFCDESI 151 (333)
Q Consensus 79 L~~L~L~~n~l~~~~~~~~~--~~~l-~~L~~L~ls~n~l~~~~~~~~~~---~-l~~L~~l~~~~~~~~~~~~~~~~~~ 151 (333)
|++|++++|.+++..+..+. .... ++|++|++++|.+++..+..+.. . .++|+.+++.+|.-.-...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~------ 155 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS------ 155 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH------
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH------
Confidence 99999999999876654320 1233 79999999999998655433222 2 2477778777653110000
Q ss_pred EEeecCcchhhhhhhhccceEEccCcccCccchhhh----hCC-CCCCEEEccCCcCCCC----Ccccccc-CCCCcEEe
Q 039161 152 TVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVL----GNF-KSLKVLNLSHNSLTGN----IPVSFEN-MTALESLD 221 (333)
Q Consensus 152 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~----~~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~ 221 (333)
......+....+.|++|++++|++++..+..+ ..+ ++|++|+|++|.+++. ++..+.. .++|++|+
T Consensus 156 ----~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 156 ----DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp ----HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred ----HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEE
Confidence 00000111112489999999999987776544 445 5999999999999864 3445555 45999999
Q ss_pred CCCCcCCCCCC----CCccccCccceeecccCcceecCCCCC--ccCCccccccccccCCCCCCCCC
Q 039161 222 LSFNKLDGRIP----EQLLSVTALALLNLSYNRLWGRIPRGN--QFNTFQNDSYIGNIRLCGEPLTV 282 (333)
Q Consensus 222 Ls~n~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~~~~~~~~~~~~l~g~~~~~ 282 (333)
|++|.+++..+ ..+..+++|+.|++++|.+.+..+... ....+.........++.+|++..
T Consensus 232 Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 99999987544 345677899999999999542211100 01123333444556777776654
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=2.3e-21 Score=165.39 Aligned_cols=186 Identities=17% Similarity=0.280 Sum_probs=148.3
Q ss_pred EECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcC
Q 039161 10 LHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQF 89 (333)
Q Consensus 10 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 89 (333)
+.+..+.+++..+ +..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 4455666654433 4567889999999999884 34 48889999999999999986544 88899999999999998
Q ss_pred CCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhcc
Q 039161 90 DCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMF 169 (333)
Q Consensus 90 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 169 (333)
++... + ..+++|++|++++|.+++. +. +. .+++|
T Consensus 103 ~~~~~--l--~~l~~L~~L~L~~n~i~~~-~~--l~---------------------------------------~l~~L 136 (291)
T 1h6t_A 103 KDLSS--L--KDLKKLKSLSLEHNGISDI-NG--LV---------------------------------------HLPQL 136 (291)
T ss_dssp CCGGG--G--TTCTTCCEEECTTSCCCCC-GG--GG---------------------------------------GCTTC
T ss_pred CCChh--h--ccCCCCCEEECCCCcCCCC-hh--hc---------------------------------------CCCCC
Confidence 87542 2 6788999999999988742 21 11 16788
Q ss_pred ceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccC
Q 039161 170 RAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 249 (333)
Q Consensus 170 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N 249 (333)
+.|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|
T Consensus 137 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEE
T ss_pred CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCC
Confidence 9999999999854 568889999999999999997655 8889999999999999985 44 3788999999999999
Q ss_pred ccee
Q 039161 250 RLWG 253 (333)
Q Consensus 250 ~l~~ 253 (333)
+++.
T Consensus 211 ~i~~ 214 (291)
T 1h6t_A 211 ECLN 214 (291)
T ss_dssp EEEC
T ss_pred cccC
Confidence 9973
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.7e-22 Score=176.05 Aligned_cols=235 Identities=15% Similarity=0.134 Sum_probs=180.6
Q ss_pred CcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCC-CChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161 5 TELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGP-LPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV 83 (333)
Q Consensus 5 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 83 (333)
+.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4799999999999987776 55799999999999999865 788889999999999999999988888899999999999
Q ss_pred cccC-cCCCC-CCCCCCcccCCcccEEEcCCC-cccccCCcccccChH-HhhhhcccCcccccccccccCceEEeecCcc
Q 039161 84 LRSN-QFDCP-PCNSNITFPFQALRIIDLSHT-EFTGFLPRRIFPSME-AMKNVDEQGRLEYMGRAFCDESITVAMKGHD 159 (333)
Q Consensus 84 L~~n-~l~~~-~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~-~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (333)
+++| .+++. .+..+ ..+++|++|++++| .+++......+..++ +|+.+++.++...+.. ...
T Consensus 149 L~~~~~l~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~------------~~l 214 (336)
T 2ast_B 149 LSGCSGFSEFALQTLL--SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK------------SDL 214 (336)
T ss_dssp CTTCBSCCHHHHHHHH--HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH------------HHH
T ss_pred CCCCCCCCHHHHHHHH--hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH------------HHH
Confidence 9999 56532 12112 56899999999999 888542223356667 8888887765311110 011
Q ss_pred hhhhhhhhccceEEccCcc-cCccchhhhhCCCCCCEEEccCCc-CCCCCccccccCCCCcEEeCCCCcCCCCCCCCccc
Q 039161 160 FQLQNIFVMFRAMDFSSNR-FHGEISEVLGNFKSLKVLNLSHNS-LTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 237 (333)
Q Consensus 160 ~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 237 (333)
......+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++. ..+..
T Consensus 215 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~ 290 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQL 290 (336)
T ss_dssp HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHH
T ss_pred HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHH
Confidence 1233447899999999999 777778889999999999999995 33222236788999999999999 432 23444
Q ss_pred c-CccceeecccCcceecCCCC
Q 039161 238 V-TALALLNLSYNRLWGRIPRG 258 (333)
Q Consensus 238 l-~~L~~L~l~~N~l~~~~p~~ 258 (333)
+ .++..|++++|.+++..|..
T Consensus 291 l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 291 LKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp HHHHSTTSEESCCCSCCTTCSS
T ss_pred HHhhCcceEEecccCccccCCc
Confidence 4 34888889999999887764
No 93
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=4.8e-21 Score=168.46 Aligned_cols=176 Identities=19% Similarity=0.175 Sum_probs=101.4
Q ss_pred cEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhc-CCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161 8 ITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLA-KYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS 86 (333)
Q Consensus 8 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 86 (333)
++++++++.++. +|..+. ..++.|+|++|++++..+..|. ++++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666663 333332 3466677777776665555565 666677777777766655555666666677777776
Q ss_pred CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhh
Q 039161 87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIF 166 (333)
Q Consensus 87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (333)
|+++...+..+ ..+++|++|++++|.+++..+.. +.. +
T Consensus 98 N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~~-~~~---------------------------------------l 135 (361)
T 2xot_A 98 NHLHTLDEFLF--SDLQALEVLLLYNNHIVVVDRNA-FED---------------------------------------M 135 (361)
T ss_dssp SCCCEECTTTT--TTCTTCCEEECCSSCCCEECTTT-TTT---------------------------------------C
T ss_pred CcCCcCCHHHh--CCCcCCCEEECCCCcccEECHHH-hCC---------------------------------------c
Confidence 66666555544 55666666666666665332221 111 4
Q ss_pred hccceEEccCcccCccchhhh---hCCCCCCEEEccCCcCCCCCccccccCCC--CcEEeCCCCcCC
Q 039161 167 VMFRAMDFSSNRFHGEISEVL---GNFKSLKVLNLSHNSLTGNIPVSFENMTA--LESLDLSFNKLD 228 (333)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~n~l~ 228 (333)
++|+.|++++|++++..+..+ ..+++|+.|+|++|++++..+..+..++. ++.|+|++|.+.
T Consensus 136 ~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 555666666666664333333 34566666666666666544455555554 255666666555
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=1.1e-20 Score=161.11 Aligned_cols=168 Identities=18% Similarity=0.253 Sum_probs=143.4
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+|++|++++|.++.. + .+..+++|++|++++|++++..+ +.++++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 799999999999865 3 48899999999999999996544 8999999999999999985 33 48999999999999
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|++++.. .+ ..+++|+.|++++|.+++. + . +. .
T Consensus 121 ~n~i~~~~--~l--~~l~~L~~L~l~~n~l~~~-~-~-l~---------------------------------------~ 154 (291)
T 1h6t_A 121 HNGISDIN--GL--VHLPQLESLYLGNNKITDI-T-V-LS---------------------------------------R 154 (291)
T ss_dssp TSCCCCCG--GG--GGCTTCCEEECCSSCCCCC-G-G-GG---------------------------------------G
T ss_pred CCcCCCCh--hh--cCCCCCCEEEccCCcCCcc-h-h-hc---------------------------------------c
Confidence 99998763 23 6789999999999998843 1 1 11 1
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCC
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 229 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 229 (333)
+++|+.|++++|.+++..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|.+..
T Consensus 155 l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 6789999999999996555 88999999999999999964 4 48899999999999999985
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=5.6e-21 Score=156.17 Aligned_cols=91 Identities=23% Similarity=0.213 Sum_probs=69.7
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
+++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+..+++|+.|+
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 34556666666666666666677788888888888888877778888888888888888888877788888888888888
Q ss_pred cccCcceecCC
Q 039161 246 LSYNRLWGRIP 256 (333)
Q Consensus 246 l~~N~l~~~~p 256 (333)
+++|++.+..+
T Consensus 160 L~~N~l~c~c~ 170 (220)
T 2v70_A 160 LLANPFNCNCY 170 (220)
T ss_dssp CCSCCEECSGG
T ss_pred ecCcCCcCCCc
Confidence 88888875443
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=9.8e-21 Score=176.36 Aligned_cols=189 Identities=17% Similarity=0.276 Sum_probs=143.3
Q ss_pred ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS 86 (333)
Q Consensus 7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 86 (333)
+..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3445566666665444 4577888889999888874 44 57888899999999998886544 78888999999999
Q ss_pred CcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhh
Q 039161 87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIF 166 (333)
Q Consensus 87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (333)
|.+.+.+ .+ ..+++|+.|++++|.+++. +. +. .+
T Consensus 97 N~l~~l~--~l--~~l~~L~~L~Ls~N~l~~l-~~--l~---------------------------------------~l 130 (605)
T 1m9s_A 97 NKIKDLS--SL--KDLKKLKSLSLEHNGISDI-NG--LV---------------------------------------HL 130 (605)
T ss_dssp SCCCCCT--TS--TTCTTCCEEECTTSCCCCC-GG--GG---------------------------------------GC
T ss_pred CCCCCCh--hh--ccCCCCCEEEecCCCCCCC-cc--cc---------------------------------------CC
Confidence 8888754 23 6788899999998888742 21 11 15
Q ss_pred hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeec
Q 039161 167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 246 (333)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 246 (333)
++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|
T Consensus 131 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 131 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 204 (605)
T ss_dssp TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEC
T ss_pred CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEc
Confidence 7788888888888854 557788888888888888886655 77888888888888888853 35777888888888
Q ss_pred ccCccee
Q 039161 247 SYNRLWG 253 (333)
Q Consensus 247 ~~N~l~~ 253 (333)
++|++++
T Consensus 205 ~~N~l~~ 211 (605)
T 1m9s_A 205 FSQECLN 211 (605)
T ss_dssp CSEEEEC
T ss_pred cCCcCcC
Confidence 8888874
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=9.7e-21 Score=166.53 Aligned_cols=178 Identities=22% Similarity=0.248 Sum_probs=138.0
Q ss_pred ccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCccccccc-CCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEE
Q 039161 31 LRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMG-SLSELKILVLRSNQFDCPPCNSNITFPFQALRIID 109 (333)
Q Consensus 31 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 109 (333)
-+.++++++.++ .+|..+. ..++.|+|++|.+++..+..|. .+++|++|+|++|++++..+..+ ..+++|++|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF--VPVPNLRYLD 94 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEE
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc--cCCCCCCEEE
Confidence 367889988888 4665553 3588899999999877777777 88899999999999888887766 7788999999
Q ss_pred cCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhC
Q 039161 110 LSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGN 189 (333)
Q Consensus 110 ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 189 (333)
+++|.++...+ ..+.. +++|+.|++++|++++..+..|..
T Consensus 95 Ls~N~l~~~~~-~~~~~---------------------------------------l~~L~~L~L~~N~i~~~~~~~~~~ 134 (361)
T 2xot_A 95 LSSNHLHTLDE-FLFSD---------------------------------------LQALEVLLLYNNHIVVVDRNAFED 134 (361)
T ss_dssp CCSSCCCEECT-TTTTT---------------------------------------CTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCCCcCCcCCH-HHhCC---------------------------------------CcCCCEEECCCCcccEECHHHhCC
Confidence 99998874332 22221 577888999999988777888888
Q ss_pred CCCCCEEEccCCcCCCCCcccc---ccCCCCcEEeCCCCcCCCCCCCCccccCc--cceeecccCccee
Q 039161 190 FKSLKVLNLSHNSLTGNIPVSF---ENMTALESLDLSFNKLDGRIPEQLLSVTA--LALLNLSYNRLWG 253 (333)
Q Consensus 190 l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~l~~N~l~~ 253 (333)
+++|+.|+|++|.+++..+..| ..+++|+.|+|++|.++...+..+..++. ++.|++++|++.+
T Consensus 135 l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 9999999999999986655555 56888999999999998655566777776 4788999988863
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.7e-20 Score=164.35 Aligned_cols=205 Identities=15% Similarity=0.147 Sum_probs=158.4
Q ss_pred ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCccc-ccccCCCCCCE-EEc
Q 039161 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFP-CWMGSLSELKI-LVL 84 (333)
Q Consensus 7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L 84 (333)
-++++-++++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.++ .+|..++++++ +.+
T Consensus 11 ~~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 11 NRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TTEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CCEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 367788889998 455544 3689999999999997667789999999999999999876555 57888998876 566
Q ss_pred ccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhh
Q 039161 85 RSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQN 164 (333)
Q Consensus 85 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (333)
..|+++...+..+ ..+++|++|++++|.++...+.. +..
T Consensus 88 ~~N~l~~l~~~~f--~~l~~L~~L~l~~n~l~~~~~~~-~~~-------------------------------------- 126 (350)
T 4ay9_X 88 KANNLLYINPEAF--QNLPNLQYLLISNTGIKHLPDVH-KIH-------------------------------------- 126 (350)
T ss_dssp EETTCCEECTTSB--CCCTTCCEEEEEEECCSSCCCCT-TCC--------------------------------------
T ss_pred cCCcccccCchhh--hhccccccccccccccccCCchh-hcc--------------------------------------
Confidence 6799999888877 78999999999999998443322 111
Q ss_pred hhhccceEEccC-cccCccchhhhhCCC-CCCEEEccCCcCCCCCccccccCCCCcEEeCCC-CcCCCCCCCCccccCcc
Q 039161 165 IFVMFRAMDFSS-NRFHGEISEVLGNFK-SLKVLNLSHNSLTGNIPVSFENMTALESLDLSF-NKLDGRIPEQLLSVTAL 241 (333)
Q Consensus 165 ~~~~L~~L~ls~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L 241 (333)
...+..+++.+ +.+....+..|..+. .++.|++++|+++.+.+..| ...+|+.|++++ |.++...++.|..+++|
T Consensus 127 -~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 127 -SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp -BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred -cchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCccc
Confidence 23456677765 567655556666654 68899999999996555555 457899999985 67775555678999999
Q ss_pred ceeecccCcceecCCCC
Q 039161 242 ALLNLSYNRLWGRIPRG 258 (333)
Q Consensus 242 ~~L~l~~N~l~~~~p~~ 258 (333)
+.||+++|+|+ .+|..
T Consensus 205 ~~LdLs~N~l~-~lp~~ 220 (350)
T 4ay9_X 205 VILDISRTRIH-SLPSY 220 (350)
T ss_dssp SEEECTTSCCC-CCCSS
T ss_pred chhhcCCCCcC-ccChh
Confidence 99999999998 66653
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=2.8e-23 Score=184.57 Aligned_cols=245 Identities=15% Similarity=0.173 Sum_probs=173.9
Q ss_pred ccchhhhCCCCccEEECCCCcCcCCCC----hhhcCCCCCcEEEccCCcC---CCcccccc-------cCCCCCCEEEcc
Q 039161 20 HIHNTFANASHLRSLDLYSNKLEGPLP----RSLAKYIKLEVVNVENNMI---SDSFPCWM-------GSLSELKILVLR 85 (333)
Q Consensus 20 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l---~~~~~~~~-------~~l~~L~~L~L~ 85 (333)
.++..+..+++|++|+|++|.++...+ ..+..+++|++|+|++|.+ ++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455677889999999999999986544 3467899999999999754 44445444 688999999999
Q ss_pred cCcCCCCC----CCCCCcccCCcccEEEcCCCcccccCCcccccCh------------HHhhhhcccCcccccccccccC
Q 039161 86 SNQFDCPP----CNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSM------------EAMKNVDEQGRLEYMGRAFCDE 149 (333)
Q Consensus 86 ~n~l~~~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l------------~~L~~l~~~~~~~~~~~~~~~~ 149 (333)
+|.+.... +..+ ..+++|++|++++|.++...+..+...+ +.|+.+++.++...-
T Consensus 103 ~n~l~~~~~~~l~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~------- 173 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFL--SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN------- 173 (386)
T ss_dssp SCCCCTTTHHHHHHHH--HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-------
T ss_pred CCcCCHHHHHHHHHHH--HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-------
Confidence 99988632 2222 5689999999999999754433322222 455566665542110
Q ss_pred ceEEeecCcch---hhhhhhhccceEEccCcccCc-----cchhhhhCCCCCCEEEccCCcCC----CCCccccccCCCC
Q 039161 150 SITVAMKGHDF---QLQNIFVMFRAMDFSSNRFHG-----EISEVLGNFKSLKVLNLSHNSLT----GNIPVSFENMTAL 217 (333)
Q Consensus 150 ~~~~~~~~~~~---~~~~~~~~L~~L~ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L 217 (333)
.... .....++.|++|++++|+++. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|
T Consensus 174 -------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 174 -------GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp -------GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred -------HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 0001 122346799999999999983 33447889999999999999996 5678888999999
Q ss_pred cEEeCCCCcCCCC----CCCCcc--ccCccceeecccCccee----cCCCCCccCCccccccccccCCCCCCCCCCC
Q 039161 218 ESLDLSFNKLDGR----IPEQLL--SVTALALLNLSYNRLWG----RIPRGNQFNTFQNDSYIGNIRLCGEPLTVRC 284 (333)
Q Consensus 218 ~~L~Ls~n~l~~~----~~~~~~--~l~~L~~L~l~~N~l~~----~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C 284 (333)
++|+|++|.+++. ++..+. .+++|+.|++++|.+++ .+|.... ........+.+.+|++...+
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~----~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID----EKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH----HHCTTCCEEECTTSBSCTTS
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH----hcCCCceEEEccCCcCCcch
Confidence 9999999999865 455553 38999999999999986 3654320 11123334456666655443
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=3.4e-20 Score=151.53 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=37.2
Q ss_pred cEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcC
Q 039161 32 RSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLS 111 (333)
Q Consensus 32 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls 111 (333)
+.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECC
Confidence 34455555554 2333322 345555555555554444445555555555555555544444333 334444444444
Q ss_pred CCccc
Q 039161 112 HTEFT 116 (333)
Q Consensus 112 ~n~l~ 116 (333)
+|.++
T Consensus 89 ~N~l~ 93 (220)
T 2v9t_B 89 GNKIT 93 (220)
T ss_dssp SSCCC
T ss_pred CCcCC
Confidence 44443
No 101
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=5.4e-23 Score=186.96 Aligned_cols=132 Identities=19% Similarity=0.189 Sum_probs=93.1
Q ss_pred cccEEECcCCcccc----ccchhhhCCCCccEEECCCCcCcCCCChhhc-----CCCCCcEEEccCCcCCCcc----ccc
Q 039161 6 ELITLHLENNSLEG----HIHNTFANASHLRSLDLYSNKLEGPLPRSLA-----KYIKLEVVNVENNMISDSF----PCW 72 (333)
Q Consensus 6 ~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~~----~~~ 72 (333)
+|++|+|++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 69999999999984 5588889999999999999998755444433 2567999999999888643 455
Q ss_pred ccCCCCCCEEEcccCcCCCCCCCCCC---cccCCcccEEEcCCCccccc----CCcccccChHHhhhhcccCc
Q 039161 73 MGSLSELKILVLRSNQFDCPPCNSNI---TFPFQALRIIDLSHTEFTGF----LPRRIFPSMEAMKNVDEQGR 138 (333)
Q Consensus 73 ~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~----~~~~~~~~l~~L~~l~~~~~ 138 (333)
+..+++|++|++++|.+.......+. ....++|++|++++|.+++. ++. .+..+++|+.+++.++
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-IVASKASLRELALGSN 237 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH-HHHHCTTCCEEECCSS
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH-HHHhCCCccEEeccCC
Confidence 66778999999999887543222110 01245888888888887753 222 2345566777777665
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=1.1e-19 Score=149.39 Aligned_cols=153 Identities=23% Similarity=0.336 Sum_probs=91.9
Q ss_pred CccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEE
Q 039161 30 HLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIID 109 (333)
Q Consensus 30 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 109 (333)
.-+.++.+++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|++++|++...++..+ ..+++|++|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~--~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--DSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc--ccCCCcCEEE
Confidence 3456777777776 4554433 677777777777777667777777778888888777776665555 5667777777
Q ss_pred cCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhC
Q 039161 110 LSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGN 189 (333)
Q Consensus 110 ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 189 (333)
+++|.+++. +...+.. +++|++|++++|+++ .+|..+..
T Consensus 95 Ls~N~l~~l-~~~~~~~---------------------------------------l~~L~~L~Ls~N~l~-~lp~~~~~ 133 (229)
T 3e6j_A 95 LGTNQLTVL-PSAVFDR---------------------------------------LVHLKELFMCCNKLT-ELPRGIER 133 (229)
T ss_dssp CCSSCCCCC-CTTTTTT---------------------------------------CTTCCEEECCSSCCC-SCCTTGGG
T ss_pred CCCCcCCcc-ChhHhCc---------------------------------------chhhCeEeccCCccc-ccCccccc
Confidence 777766632 2111111 344455555555555 44444555
Q ss_pred CCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCC
Q 039161 190 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228 (333)
Q Consensus 190 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 228 (333)
+++|++|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus 134 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555555555555555444444555555555555555554
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=5.7e-20 Score=150.17 Aligned_cols=154 Identities=19% Similarity=0.290 Sum_probs=134.0
Q ss_pred CcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhc
Q 039161 55 LEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVD 134 (333)
Q Consensus 55 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~ 134 (333)
-+.++++++.++ .+|..+. +++++|++++|++++..+..+ ..+++|++|++++|.+++..|.. +..
T Consensus 13 ~~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~--~~l~~L~~L~Ls~N~i~~~~~~~-~~~-------- 78 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAF--SPYKKLRRIDLSNNQISELAPDA-FQG-------- 78 (220)
T ss_dssp TTEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSS--TTCTTCCEEECCSSCCCEECTTT-TTT--------
T ss_pred CCEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHh--hCCCCCCEEECCCCcCCCcCHHH-hhC--------
Confidence 368899999998 4666554 789999999999998887776 78899999999999998655543 221
Q ss_pred ccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccC
Q 039161 135 EQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 214 (333)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 214 (333)
+++|++|++++|.++...+..|..+++|++|+|++|.+++..+..|..+
T Consensus 79 -------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 127 (220)
T 2v9t_B 79 -------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127 (220)
T ss_dssp -------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred -------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC
Confidence 6789999999999997777778999999999999999999889999999
Q ss_pred CCCcEEeCCCCcCCCCCCCCccccCccceeecccCccee
Q 039161 215 TALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 253 (333)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 253 (333)
++|+.|+|++|.+++..+..+..+++|+.|++++|++.+
T Consensus 128 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999999999999998888889999999999999999984
No 104
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=1.6e-22 Score=183.86 Aligned_cols=248 Identities=19% Similarity=0.127 Sum_probs=133.2
Q ss_pred CCcCcccEEECcCCccccccchhhhC-----CCCccEEECCCCcCcCCC----ChhhcCCCCCcEEEccCCcCCCccccc
Q 039161 2 SFSTELITLHLENNSLEGHIHNTFAN-----ASHLRSLDLYSNKLEGPL----PRSLAKYIKLEVVNVENNMISDSFPCW 72 (333)
Q Consensus 2 ~l~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~~~~~ 72 (333)
.++ +|++|++++|.+++..+..+.. .++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..
T Consensus 111 ~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 189 (461)
T 1z7x_W 111 TLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV 189 (461)
T ss_dssp SCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred cCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH
Confidence 345 7888888888876554444332 456888888888777533 455566777888888887776543333
Q ss_pred cc-----CCCCCCEEEcccCcCCCCC----CCCCCcccCCcccEEEcCCCcccccCC----cccccChHHhhhhcccCcc
Q 039161 73 MG-----SLSELKILVLRSNQFDCPP----CNSNITFPFQALRIIDLSHTEFTGFLP----RRIFPSMEAMKNVDEQGRL 139 (333)
Q Consensus 73 ~~-----~l~~L~~L~L~~n~l~~~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~~l~~L~~l~~~~~~ 139 (333)
+. ..++|++|++++|.++... +..+ ..+++|++|++++|.+++... ..++..++.|+.+++.++.
T Consensus 190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV--ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH--HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH--HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 32 2557777777777766532 1111 345677777777776654311 1222234556666665542
Q ss_pred ccc------cccc--ccCceEEeec--Ccch----hhhh----hhhccceEEccCcccCcc----chhhhhCCCCCCEEE
Q 039161 140 EYM------GRAF--CDESITVAMK--GHDF----QLQN----IFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLN 197 (333)
Q Consensus 140 ~~~------~~~~--~~~~~~~~~~--~~~~----~~~~----~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~ 197 (333)
..- .... .......... .... .+.. ..+.|+.|++++|.+++. ++..+..+++|++|+
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 347 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence 110 0000 0000000000 0000 0111 113666666666666543 344455556666666
Q ss_pred ccCCcCCCCCcccccc-----CCCCcEEeCCCCcCCC----CCCCCccccCccceeecccCcce
Q 039161 198 LSHNSLTGNIPVSFEN-----MTALESLDLSFNKLDG----RIPEQLLSVTALALLNLSYNRLW 252 (333)
Q Consensus 198 Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~ 252 (333)
+++|.+++..+..+.. .++|++|++++|.+++ .++..+..+++|+.|++++|+++
T Consensus 348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 6666665443333322 4566666666666664 44555555666666666666664
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=150.54 Aligned_cols=115 Identities=18% Similarity=0.322 Sum_probs=101.3
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
+++|+.|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|+.|+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 56788888888888877777899999999999999999988888999999999999999999988899999999999999
Q ss_pred cccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161 246 LSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 246 l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~ 285 (333)
+++|.+++..|. .|........+.+.+||+.|+|.
T Consensus 136 L~~N~l~~~~~~-----~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 136 LYDNQITTVAPG-----AFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CTTSCCCCBCTT-----TTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCCcCCEECHH-----HhcCCCCCCEEEecCcCCcCCCc
Confidence 999999876665 34444555677899999999996
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=5.9e-20 Score=171.09 Aligned_cols=171 Identities=18% Similarity=0.245 Sum_probs=145.1
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+|+.|++++|.+... + .|..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++ ++ .+..+++|++|+|+
T Consensus 44 ~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence 799999999999855 3 58899999999999999996544 8999999999999999985 33 78899999999999
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|.+.+.. .+ ..+++|+.|++++|.+++. + . +..
T Consensus 118 ~N~l~~l~--~l--~~l~~L~~L~Ls~N~l~~l-~-~-l~~--------------------------------------- 151 (605)
T 1m9s_A 118 HNGISDIN--GL--VHLPQLESLYLGNNKITDI-T-V-LSR--------------------------------------- 151 (605)
T ss_dssp TSCCCCCG--GG--GGCTTCSEEECCSSCCCCC-G-G-GGS---------------------------------------
T ss_pred CCCCCCCc--cc--cCCCccCEEECCCCccCCc-h-h-hcc---------------------------------------
Confidence 99998763 23 7789999999999998853 1 1 111
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCC
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 232 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 232 (333)
+++|+.|+|++|.+++..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+...
T Consensus 152 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 152 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 6789999999999997666 88999999999999999964 468889999999999999986433
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.83 E-value=5.5e-20 Score=154.41 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=46.4
Q ss_pred ccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecc
Q 039161 168 MFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 247 (333)
Q Consensus 168 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 247 (333)
.|+.|++++|++++ ++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|.+++. ..+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 107 CLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred cccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 34445555555543 22 355566666666666666643 2 455666666666666666644 445666666667777
Q ss_pred cCcce
Q 039161 248 YNRLW 252 (333)
Q Consensus 248 ~N~l~ 252 (333)
+|+++
T Consensus 181 ~N~~~ 185 (263)
T 1xeu_A 181 GQKCV 185 (263)
T ss_dssp EEEEE
T ss_pred CCccc
Confidence 76665
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=2.4e-19 Score=147.36 Aligned_cols=157 Identities=22% Similarity=0.226 Sum_probs=134.7
Q ss_pred CCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhh
Q 039161 54 KLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNV 133 (333)
Q Consensus 54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l 133 (333)
..+.++.+++.++ .+|..+. ++|++|++++|.+++..+..+ ..+++|++|++++|.++ .++...+..
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~N~l~-~i~~~~~~~------- 86 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVF--DSLINLKELYLGSNQLG-ALPVGVFDS------- 86 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT-------
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHh--hCccCCcEEECCCCCCC-CcChhhccc-------
Confidence 4678999999988 5665543 899999999999999988777 78999999999999997 444332322
Q ss_pred cccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCcccccc
Q 039161 134 DEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFEN 213 (333)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 213 (333)
+++|+.|++++|++++..+..|..+++|++|++++|+++ .+|..+..
T Consensus 87 --------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 133 (229)
T 3e6j_A 87 --------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER 133 (229)
T ss_dssp --------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG
T ss_pred --------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccccc
Confidence 678899999999999777888899999999999999999 77888899
Q ss_pred CCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcceecCC
Q 039161 214 MTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 256 (333)
Q Consensus 214 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 256 (333)
+++|+.|+|++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus 134 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9999999999999997777789999999999999999986554
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=9.2e-20 Score=168.15 Aligned_cols=169 Identities=24% Similarity=0.330 Sum_probs=139.5
Q ss_pred cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161 4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV 83 (333)
Q Consensus 4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 83 (333)
+++|++|+|++|.|+ .+| ..+++|++|++++|++++ +|. +.+ +|++|++++|.+++ +|. .+++|++|+
T Consensus 79 ~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 79 PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN 146 (571)
T ss_dssp CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence 347999999999999 455 457999999999999996 676 665 99999999999996 565 689999999
Q ss_pred cccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhh
Q 039161 84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQ 163 (333)
Q Consensus 84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (333)
+++|.+++++. .+++|++|++++|.+++ +|. +
T Consensus 147 Ls~N~l~~lp~------~l~~L~~L~Ls~N~L~~-lp~-l---------------------------------------- 178 (571)
T 3cvr_A 147 ADNNQLTMLPE------LPTSLEVLSVRNNQLTF-LPE-L---------------------------------------- 178 (571)
T ss_dssp CCSSCCSCCCC------CCTTCCEEECCSSCCSC-CCC-C----------------------------------------
T ss_pred CCCCccCcCCC------cCCCcCEEECCCCCCCC-cch-h----------------------------------------
Confidence 99999998653 46899999999999985 553 2
Q ss_pred hhhhccceEEccCcccCccchhhhhCCCCC-------CEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCcc
Q 039161 164 NIFVMFRAMDFSSNRFHGEISEVLGNFKSL-------KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL 236 (333)
Q Consensus 164 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 236 (333)
.++|+.|++++|+++ .+|. +.. +| +.|+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+.
T Consensus 179 --~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 179 --PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp --CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred --hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 256888999999998 5665 544 67 99999999999 5777777899999999999999988887766
Q ss_pred ccC
Q 039161 237 SVT 239 (333)
Q Consensus 237 ~l~ 239 (333)
.+.
T Consensus 252 ~l~ 254 (571)
T 3cvr_A 252 QQT 254 (571)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=2.8e-19 Score=143.57 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=104.9
Q ss_pred cCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHH
Q 039161 50 AKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEA 129 (333)
Q Consensus 50 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~ 129 (333)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++... .+ ..+++|++|++++|.+++..+..+ ..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~--~l--~~l~~L~~L~l~~n~l~~~~~~~l-~~--- 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN--PI--SGLSNLERLRIMGKDVTSDKIPNL-SG--- 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG--GG--TTCTTCCEEEEECTTCBGGGSCCC-TT---
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch--hh--hcCCCCCEEEeECCccCcccChhh-cC---
Confidence 44556666777766666 334 4666667777777766554332 22 456677777777777665433321 11
Q ss_pred hhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCc-CCCCCc
Q 039161 130 MKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNS-LTGNIP 208 (333)
Q Consensus 130 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~ 208 (333)
+++|++|++++|++++..+..+..+++|++|++++|. ++ .++
T Consensus 111 ------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~ 153 (197)
T 4ezg_A 111 ------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM 153 (197)
T ss_dssp ------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG
T ss_pred ------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH
Confidence 5677788888888877777788888889999999887 55 444
Q ss_pred cccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcce
Q 039161 209 VSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 252 (333)
Q Consensus 209 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 252 (333)
.+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.
T Consensus 154 -~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 154 -PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred -hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 67888889999999998885 33 6778888999999999885
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=5e-19 Score=142.09 Aligned_cols=154 Identities=18% Similarity=0.243 Sum_probs=126.2
Q ss_pred hCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcc
Q 039161 26 ANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQAL 105 (333)
Q Consensus 26 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 105 (333)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+ ..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL--SGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC--TTCTTC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh--cCCCCC
Confidence 56789999999999998 566 68999999999999998763 3478899999999999999987666665 779999
Q ss_pred cEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcc-cCccch
Q 039161 106 RIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR-FHGEIS 184 (333)
Q Consensus 106 ~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~ 184 (333)
++|++++|.+++..+..+ . .+++|++|++++|. ++ .+|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l-~---------------------------------------~l~~L~~L~L~~n~~i~-~~~ 153 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKI-N---------------------------------------TLPKVNSIDLSYNGAIT-DIM 153 (197)
T ss_dssp CEEECCSSBCBGGGHHHH-T---------------------------------------TCSSCCEEECCSCTBCC-CCG
T ss_pred CEEEecCCccCcHhHHHH-h---------------------------------------hCCCCCEEEccCCCCcc-ccH
Confidence 999999999986444321 1 16789999999998 66 555
Q ss_pred hhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCC
Q 039161 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 229 (333)
Q Consensus 185 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 229 (333)
.+..+++|+.|++++|.+++. + .+..+++|++|++++|.+.+
T Consensus 154 -~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 154 -PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred -hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 588999999999999999964 3 78889999999999999864
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=3.6e-21 Score=178.18 Aligned_cols=88 Identities=30% Similarity=0.431 Sum_probs=66.1
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCC-CCCccccCcccee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI-PEQLLSVTALALL 244 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L 244 (333)
+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|++|.+++.. |..+..+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 566777777777777 667777777888888888888775 45 6777778888888888877665 7777777788888
Q ss_pred ecccCcceecCC
Q 039161 245 NLSYNRLWGRIP 256 (333)
Q Consensus 245 ~l~~N~l~~~~p 256 (333)
++++|++++..|
T Consensus 539 ~L~~N~l~~~~~ 550 (567)
T 1dce_A 539 NLQGNSLCQEEG 550 (567)
T ss_dssp ECTTSGGGGSSS
T ss_pred EecCCcCCCCcc
Confidence 888888775544
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=8.3e-19 Score=140.15 Aligned_cols=91 Identities=18% Similarity=0.254 Sum_probs=62.2
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
+++|++|++++|++++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..+..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 45556666666666655566666777777777777777766666677777777777777777766666777777777777
Q ss_pred cccCcceecCC
Q 039161 246 LSYNRLWGRIP 256 (333)
Q Consensus 246 l~~N~l~~~~p 256 (333)
+++|++++..+
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 77777765443
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=4.2e-19 Score=169.24 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=42.4
Q ss_pred chhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCccc
Q 039161 22 HNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFP 101 (333)
Q Consensus 22 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 101 (333)
+..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|+++.+ |..+ ..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~--~~ 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAEL--GS 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC-CSSG--GG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc-Chhh--cC
Confidence 344445555555555555554 34444445555555555555555 4444455555555555555555532 2222 44
Q ss_pred CCcccEEEcCCCccc
Q 039161 102 FQALRIIDLSHTEFT 116 (333)
Q Consensus 102 l~~L~~L~ls~n~l~ 116 (333)
+++|++|+|++|.++
T Consensus 292 l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT 306 (727)
T ss_dssp GTTCSEEECCSSCCC
T ss_pred CCCCCEEECCCCCCC
Confidence 555555555555544
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.1e-17 Score=140.40 Aligned_cols=168 Identities=17% Similarity=0.273 Sum_probs=141.9
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+++.++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4677888999998554 57889999999999999984 55 68899999999999999996544 8999999999999
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|++++.+... . ++|++|++++|.+++. +. +..
T Consensus 94 ~N~l~~l~~~~----~-~~L~~L~L~~N~l~~~-~~--l~~--------------------------------------- 126 (263)
T 1xeu_A 94 RNRLKNLNGIP----S-ACLSRLFLDNNELRDT-DS--LIH--------------------------------------- 126 (263)
T ss_dssp SSCCSCCTTCC----C-SSCCEEECCSSCCSBS-GG--GTT---------------------------------------
T ss_pred CCccCCcCccc----c-CcccEEEccCCccCCC-hh--hcC---------------------------------------
Confidence 99999876432 2 8999999999998852 21 111
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCC
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 230 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 230 (333)
+++|+.|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|.+...
T Consensus 127 l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 67899999999999854 4 588999999999999999976 6788999999999999999854
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=6.3e-18 Score=146.68 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=80.3
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCc-EEeCCCCcCCCCCCCCccccCcccee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE-SLDLSFNKLDGRIPEQLLSVTALALL 244 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L 244 (333)
+++|+.+++++|+++...+.+|..+++|+.+++.+| +..+.+.+|.++.+|+ .+++.+ .++.+.+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 689999999999999777788999999999999998 8778888999999999 999999 7776778899999999999
Q ss_pred ecccCcceecCCCC
Q 039161 245 NLSYNRLWGRIPRG 258 (333)
Q Consensus 245 ~l~~N~l~~~~p~~ 258 (333)
++++|.++ .++..
T Consensus 303 ~l~~n~i~-~I~~~ 315 (329)
T 3sb4_A 303 LATGDKIT-TLGDE 315 (329)
T ss_dssp EECSSCCC-EECTT
T ss_pred EeCCCccC-ccchh
Confidence 99999997 44443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=1.2e-20 Score=174.74 Aligned_cols=193 Identities=16% Similarity=0.156 Sum_probs=140.2
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCc-------------CcCCCChhhcCCCCCcEEE-ccCCcCCCcccc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNK-------------LEGPLPRSLAKYIKLEVVN-VENNMISDSFPC 71 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~~~~~ 71 (333)
+|+.|+|++|.++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+......
T Consensus 350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 6778888888887 667778888888888887664 4556667777777777777 454433211000
Q ss_pred -----ccc--CCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCccccccc
Q 039161 72 -----WMG--SLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGR 144 (333)
Q Consensus 72 -----~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 144 (333)
.+. ....|+.|++++|.+++.+. + ..+++|+.|++++|.++ .+|..+ ..
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~--~~l~~L~~L~Ls~N~l~-~lp~~~-~~------------------ 484 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCH--L--EQLLLVTHLDLSHNRLR-ALPPAL-AA------------------ 484 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSSCCC--G--GGGTTCCEEECCSSCCC-CCCGGG-GG------------------
T ss_pred hhhcccccccCccCceEEEecCCCCCCCcC--c--cccccCcEeecCccccc-ccchhh-hc------------------
Confidence 000 01358888888888887642 3 77888888888888888 666432 11
Q ss_pred ccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCC-ccccccCCCCcEEeCC
Q 039161 145 AFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNI-PVSFENMTALESLDLS 223 (333)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls 223 (333)
+++|+.|++++|.+++ +| .+..+++|+.|+|++|++++.. |..++.+++|+.|+|+
T Consensus 485 ---------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 485 ---------------------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp ---------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred ---------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 6788899999999985 66 7888999999999999999776 8889999999999999
Q ss_pred CCcCCCCCCCC---ccccCccceeec
Q 039161 224 FNKLDGRIPEQ---LLSVTALALLNL 246 (333)
Q Consensus 224 ~n~l~~~~~~~---~~~l~~L~~L~l 246 (333)
+|.+++..|.. +..+++|+.|++
T Consensus 542 ~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 542 GNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcCCCCccHHHHHHHHCcccCccCC
Confidence 99998655432 234777887764
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=131.60 Aligned_cols=113 Identities=29% Similarity=0.468 Sum_probs=77.6
Q ss_pred hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeec
Q 039161 167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 246 (333)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 246 (333)
+.+++|++++|.++ .+|..|..+++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 45677777777776 55667777777777777777777666677777777777777777777666667777777777777
Q ss_pred ccCcceecCCCCCccCCccccccccccCCCCCCCCCCCC
Q 039161 247 SYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEPLTVRCS 285 (333)
Q Consensus 247 ~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~~~~~C~ 285 (333)
++|.++ .+|.. .|........+.+.+||+.|+|.
T Consensus 110 ~~N~l~-~~~~~----~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 110 HGNDIS-VVPEG----AFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CSSCCC-BCCTT----TTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCC-eeChh----hhhcCccccEEEeCCCCeecCCc
Confidence 777776 33332 23333444555677777777774
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=8.6e-18 Score=131.31 Aligned_cols=86 Identities=21% Similarity=0.197 Sum_probs=65.8
Q ss_pred CCCccEEECCCCcCc-CCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCccc
Q 039161 28 ASHLRSLDLYSNKLE-GPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALR 106 (333)
Q Consensus 28 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 106 (333)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+ ..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA--EKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH--HHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH--hhCCCCC
Confidence 467888888888887 66777778888888888888888754 677788888888888888877544433 4577888
Q ss_pred EEEcCCCcccc
Q 039161 107 IIDLSHTEFTG 117 (333)
Q Consensus 107 ~L~ls~n~l~~ 117 (333)
+|++++|.+++
T Consensus 99 ~L~Ls~N~l~~ 109 (168)
T 2ell_A 99 HLNLSGNKLKD 109 (168)
T ss_dssp EEECBSSSCCS
T ss_pred EEeccCCccCc
Confidence 88888887763
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=4.4e-17 Score=130.10 Aligned_cols=131 Identities=22% Similarity=0.312 Sum_probs=84.1
Q ss_pred cEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccc-cccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEc
Q 039161 32 RSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPC-WMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDL 110 (333)
Q Consensus 32 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 110 (333)
+++++++|.++ .+|..+.. ++++|++++|.+++..+. .|..+++|++|++++|.+++..+..+ ..+++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L----- 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--EGASHI----- 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--TTCTTC-----
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc--CCcccC-----
Confidence 56777777775 45544432 666777777766654443 35566666666666666665554444 344444
Q ss_pred CCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCC
Q 039161 111 SHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNF 190 (333)
Q Consensus 111 s~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 190 (333)
++|++++|++++..+..|..+
T Consensus 81 -----------------------------------------------------------~~L~Ls~N~l~~~~~~~~~~l 101 (192)
T 1w8a_A 81 -----------------------------------------------------------QELQLGENKIKEISNKMFLGL 101 (192)
T ss_dssp -----------------------------------------------------------CEEECCSCCCCEECSSSSTTC
T ss_pred -----------------------------------------------------------CEEECCCCcCCccCHHHhcCC
Confidence 445555555554555556677
Q ss_pred CCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCC
Q 039161 191 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 231 (333)
Q Consensus 191 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 231 (333)
++|++|+|++|++++..|..+..+++|++|+|++|.+.+..
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 77888888888888777777888888888888888887543
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1e-17 Score=145.38 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=72.2
Q ss_pred hhccceEEccCcccCccchhhh-hCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccc-e
Q 039161 166 FVMFRAMDFSSNRFHGEISEVL-GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA-L 243 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~ 243 (333)
+.++..+.+.++-.. .....+ ..+++|+.++|++|+++.+.+.+|.++.+|+.+++.+| ++.+.+..|.++.+|+ .
T Consensus 201 ~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 455666666654222 222222 24789999999999998777788999999999999998 7767777899999998 9
Q ss_pred eecccCcceecCCCCCccCCccccccccccCCCCCC
Q 039161 244 LNLSYNRLWGRIPRGNQFNTFQNDSYIGNIRLCGEP 279 (333)
Q Consensus 244 L~l~~N~l~~~~p~~~~~~~~~~~~~~~~~~l~g~~ 279 (333)
+++.+ .++ .|+.. .|........+.+.++.
T Consensus 279 l~l~~-~l~-~I~~~----aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 279 LELPA-SVT-AIEFG----AFMGCDNLRYVLATGDK 308 (329)
T ss_dssp EEECT-TCC-EECTT----TTTTCTTEEEEEECSSC
T ss_pred EEEcc-cce-EEchh----hhhCCccCCEEEeCCCc
Confidence 99988 565 44443 44444434444444443
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=5.7e-17 Score=126.60 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCCcEEEccCCcCC-CcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccc
Q 039161 53 IKLEVVNVENNMIS-DSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTG 117 (333)
Q Consensus 53 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~ 117 (333)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+ ..+++|++|++++|.+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~N~l~~ 85 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL--PKLPKLKKLELSENRIFG 85 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC--CCCSSCCEEEEESCCCCS
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh--ccCCCCCEEECcCCcCch
Confidence 56777777777776 45666666677777777777776655 222 445555555555555553
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=4.3e-18 Score=162.31 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=79.7
Q ss_pred CCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCccc
Q 039161 44 PLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRI 123 (333)
Q Consensus 44 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 123 (333)
..+..|..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++.+ +..+ ..+++|++|+|++|.++ .+|..+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~l-p~~~--~~l~~L~~L~Ls~N~l~-~lp~~~ 289 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTEL-PAEI--KNLSNLRVLDLSHNRLT-SLPAEL 289 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCC-CGGG--GGGTTCCEEECTTSCCS-SCCSSG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCccc-Chhh--hCCCCCCEEeCcCCcCC-ccChhh
Confidence 34555666666666666666666 4454555666666666666666633 2333 55666666666666666 444432
Q ss_pred ccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcC
Q 039161 124 FPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSL 203 (333)
Q Consensus 124 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 203 (333)
.. +++|++|+|++|.++ .+|..|..+++|+.|+|++|.+
T Consensus 290 -~~---------------------------------------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 290 -GS---------------------------------------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp -GG---------------------------------------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred -cC---------------------------------------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence 11 455666666666665 5555566666666666666666
Q ss_pred CCCCccccccCCC-CcEEeCCCCcCCCCCCC
Q 039161 204 TGNIPVSFENMTA-LESLDLSFNKLDGRIPE 233 (333)
Q Consensus 204 ~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~ 233 (333)
++.+|..+..+.. +..++|++|.+++.+|.
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 6666655543321 12355666666655554
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.8e-16 Score=126.60 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=52.1
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
++++|++++|.++ .+|..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4455555555544 233444445555555555555544444444455555555555555544444444445555555555
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCccc
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFT 116 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 116 (333)
+|.++..++..+ ..+++|+.|++++|.+.
T Consensus 111 ~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAF--NDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTT--TTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhh--hcCccccEEEeCCCCee
Confidence 555544444333 34445555555555444
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=2.1e-16 Score=124.45 Aligned_cols=113 Identities=23% Similarity=0.274 Sum_probs=82.3
Q ss_pred cCcccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEE
Q 039161 4 STELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILV 83 (333)
Q Consensus 4 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 83 (333)
++++++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 34677777777777766666777777777777777777766666667777777777777777766666667777777777
Q ss_pred cccCcCCCCCCCCCCcccCCcccEEEcCCCccccc
Q 039161 84 LRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118 (333)
Q Consensus 84 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 118 (333)
+++|.+++.++..+ ..+++|++|++++|.+.+.
T Consensus 107 l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 107 LDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCC
T ss_pred CcCCcceEeCHHHh--cCCcccCEEEecCCCeecc
Confidence 77777776665544 5677777777777777654
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=1.2e-16 Score=122.07 Aligned_cols=57 Identities=23% Similarity=0.234 Sum_probs=28.9
Q ss_pred hccceEEccCcccCcc-chhhhhCCCCCCEEEccCCcCCCCCc---cccccCCCCcEEeCC
Q 039161 167 VMFRAMDFSSNRFHGE-ISEVLGNFKSLKVLNLSHNSLTGNIP---VSFENMTALESLDLS 223 (333)
Q Consensus 167 ~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls 223 (333)
++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.||++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 4445555555555432 12445555555555555555554433 345555555555554
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=2.8e-17 Score=125.71 Aligned_cols=112 Identities=20% Similarity=0.233 Sum_probs=98.6
Q ss_pred cCcccEEECcCCccc-cccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEE
Q 039161 4 STELITLHLENNSLE-GHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKIL 82 (333)
Q Consensus 4 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (333)
+++++.|++++|.++ +..|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 458999999999998 78888889999999999999999965 778999999999999999998788888889999999
Q ss_pred EcccCcCCCCC-CCCCCcccCCcccEEEcCCCcccccC
Q 039161 83 VLRSNQFDCPP-CNSNITFPFQALRIIDLSHTEFTGFL 119 (333)
Q Consensus 83 ~L~~n~l~~~~-~~~~~~~~l~~L~~L~ls~n~l~~~~ 119 (333)
++++|.+++.+ +..+ ..+++|++|++++|.+++..
T Consensus 94 ~ls~N~i~~~~~~~~~--~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPL--KKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp ECTTSCCCSHHHHGGG--GGCTTCCEEECTTCGGGGST
T ss_pred ECCCCcCCChHHHHHH--hhCCCCCEEeCcCCcccchH
Confidence 99999998753 2333 77899999999999998543
No 128
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=9.2e-18 Score=157.20 Aligned_cols=245 Identities=13% Similarity=0.045 Sum_probs=123.4
Q ss_pred cccEEECcCCccccc----cchhhhCCCCccEEECCCCcCcC----CCChhhcCCCCCcEEEccCCcCCCcccccccCCC
Q 039161 6 ELITLHLENNSLEGH----IHNTFANASHLRSLDLYSNKLEG----PLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLS 77 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 77 (333)
+|++|+|++|.+++. ++..+.++++|++|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+..++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~ 243 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA 243 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh
Confidence 667777777766544 33344556677777777766652 233334556777777777766653 444555555
Q ss_pred CCCEEEcccCcCC--------------------------CCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhh
Q 039161 78 ELKILVLRSNQFD--------------------------CPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMK 131 (333)
Q Consensus 78 ~L~~L~L~~n~l~--------------------------~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~ 131 (333)
+|++|+++.+... ...+. ....+++|++|++++|.+++.....++..+++|+
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI--LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG--GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH--HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 6666655532111 00001 1134567888888888765443333345556666
Q ss_pred hhcccCccccccc------ccccCceEEee-----------cCc----chhhhhhhhccceEEccCcccCccchhh----
Q 039161 132 NVDEQGRLEYMGR------AFCDESITVAM-----------KGH----DFQLQNIFVMFRAMDFSSNRFHGEISEV---- 186 (333)
Q Consensus 132 ~l~~~~~~~~~~~------~~~~~~~~~~~-----------~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~---- 186 (333)
.+++.++...... ........+.. ... ...+...+++|+.|+++.|.+++..+..
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 6655422110000 00011111110 000 0011122445555555444444333333
Q ss_pred ------------------------------hhCCCCCCEEEccCCc--CCCCCccccc-cCCCCcEEeCCCCcCCCC-CC
Q 039161 187 ------------------------------LGNFKSLKVLNLSHNS--LTGNIPVSFE-NMTALESLDLSFNKLDGR-IP 232 (333)
Q Consensus 187 ------------------------------~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~ 232 (333)
+..+++|++|++++|. +++..+..+. .+++|+.|++++|.+++. ++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 3334445555554322 3322222222 367788888888877652 34
Q ss_pred CCccccCccceeecccCccee
Q 039161 233 EQLLSVTALALLNLSYNRLWG 253 (333)
Q Consensus 233 ~~~~~l~~L~~L~l~~N~l~~ 253 (333)
..+..+++|+.|++++|.+++
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBH
T ss_pred HHHhcCcccCeeeccCCCCcH
Confidence 445677888888888888754
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=7.8e-16 Score=121.18 Aligned_cols=91 Identities=22% Similarity=0.254 Sum_probs=62.8
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 34555566666666655555566777777777777777766666677777777777777777755555567777778888
Q ss_pred cccCcceecCC
Q 039161 246 LSYNRLWGRIP 256 (333)
Q Consensus 246 l~~N~l~~~~p 256 (333)
+++|++++..|
T Consensus 131 l~~N~~~~~~~ 141 (177)
T 2o6r_A 131 LHTNPWDCSCP 141 (177)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCeeccCc
Confidence 88887775544
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=1.8e-18 Score=162.10 Aligned_cols=91 Identities=12% Similarity=0.020 Sum_probs=69.9
Q ss_pred hhhhhccceEEccCc--ccCccchhhhh-CCCCCCEEEccCCcCCCC-CccccccCCCCcEEeCCCCcCCCC-CCCCccc
Q 039161 163 QNIFVMFRAMDFSSN--RFHGEISEVLG-NFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSFNKLDGR-IPEQLLS 237 (333)
Q Consensus 163 ~~~~~~L~~L~ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~ 237 (333)
...+++|+.|+++++ .+++..+..+. .+++|+.|++++|.+++. ++..+.++++|+.|++++|.+++. ++.....
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 344788889998753 36655555444 489999999999999863 445567889999999999998754 3444567
Q ss_pred cCccceeecccCccee
Q 039161 238 VTALALLNLSYNRLWG 253 (333)
Q Consensus 238 l~~L~~L~l~~N~l~~ 253 (333)
+++|+.|++++|++++
T Consensus 512 l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASM 527 (592)
T ss_dssp CSSCCEEEEESCBCCT
T ss_pred cCccCeeECcCCcCCH
Confidence 8999999999999874
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=2.2e-15 Score=133.74 Aligned_cols=215 Identities=12% Similarity=0.102 Sum_probs=144.3
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
.++.+.+.+ .++.+...+|.+. +|+.+++..+ ++.+...+|.++ +|+.+.+.. .++.....+|..+++|+.+++.
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 466666654 4666777888874 7999999876 766667778774 799999885 6666667788999999999999
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
+|+++.+...+| . ..+|+.+.+..+ ++ .++...|..+.+|+.+.+..+...++...+..
T Consensus 189 ~n~l~~I~~~aF--~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~---------------- 247 (401)
T 4fdw_A 189 KTKITKLPASTF--V-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE---------------- 247 (401)
T ss_dssp TSCCSEECTTTT--T-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTT----------------
T ss_pred CCcceEechhhE--e-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCccCcccccccc----------------
Confidence 988888887776 3 478999999854 55 56667788888999888887776666555533
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCC-----CCCccccccCCCCcEEeCCCCcCCCCCCCCccccCc
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLT-----GNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 240 (333)
.+|+.+++ .+.++.....+|..+++|+.+++.+|.+. .+.+.+|.++++|+.+++.+ .++.+....|..+++
T Consensus 248 -~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~ 324 (401)
T 4fdw_A 248 -SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRK 324 (401)
T ss_dssp -CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCS
T ss_pred -CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCC
Confidence 24555555 23344344555666666666666555443 23445555666666666653 344444555556666
Q ss_pred cceeecccC
Q 039161 241 LALLNLSYN 249 (333)
Q Consensus 241 L~~L~l~~N 249 (333)
|+.+++..|
T Consensus 325 L~~l~lp~~ 333 (401)
T 4fdw_A 325 VTQLTIPAN 333 (401)
T ss_dssp CCEEEECTT
T ss_pred ccEEEECcc
Confidence 666666443
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=9.2e-16 Score=120.65 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=31.7
Q ss_pred hhCCCCccEEECCCCcCcCCCChhhcCCC-CCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCC
Q 039161 25 FANASHLRSLDLYSNKLEGPLPRSLAKYI-KLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDC 91 (333)
Q Consensus 25 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 91 (333)
+..+.+|++|++++|+++. +|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~ 78 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR 78 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc
Confidence 3445566666666666652 333 33332 566666666655532 344444455555555444443
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=1e-15 Score=119.65 Aligned_cols=91 Identities=20% Similarity=0.149 Sum_probs=82.9
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
.+.+++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 46788999999999988899999999999999999999988888899999999999999999977777899999999999
Q ss_pred cccCcceecCC
Q 039161 246 LSYNRLWGRIP 256 (333)
Q Consensus 246 l~~N~l~~~~p 256 (333)
+++|++++..+
T Consensus 109 L~~N~~~c~c~ 119 (170)
T 3g39_A 109 LLNNPWDCACS 119 (170)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCCCCCch
Confidence 99999985544
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=9.4e-15 Score=129.64 Aligned_cols=218 Identities=10% Similarity=0.052 Sum_probs=175.9
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
+|+.+.+..+ ++.+...+|.+ .+|+.+++.. .++...+.+|.+|.+|+.+++..|.++.....+|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 5888888776 77788888988 4799999996 67767778999999999999999999866556665 6899999998
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhh
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNI 165 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (333)
.+ ++.+...+| ..+++|+.+++..+ ++ .++...|.+ ..|+.+.+.++...++...+..
T Consensus 212 ~~-l~~I~~~aF--~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~---------------- 269 (401)
T 4fdw_A 212 VT-LKEIGSQAF--LKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPNGVTNIASRAFYY---------------- 269 (401)
T ss_dssp TT-CCEECTTTT--TTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEETTCCEECTTTTTT----------------
T ss_pred Cc-hheehhhHh--hCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCCCccEEChhHhhC----------------
Confidence 54 777777776 78899999999875 44 556666776 6788888877766666555544
Q ss_pred hhccceEEccCcccC-----ccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCc
Q 039161 166 FVMFRAMDFSSNRFH-----GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 240 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 240 (333)
+++|+.+++.+|.+. ...+.+|..+++|+.+++. +.++.+...+|.++++|+.+++..+ ++.+....|..+ +
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G 346 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence 788999999887664 3566789999999999999 4577677889999999999999665 665777889999 9
Q ss_pred cceeecccCcce
Q 039161 241 LALLNLSYNRLW 252 (333)
Q Consensus 241 L~~L~l~~N~l~ 252 (333)
|+.+++.+|.+.
T Consensus 347 L~~l~l~~n~~~ 358 (401)
T 4fdw_A 347 IKEVKVEGTTPP 358 (401)
T ss_dssp CCEEEECCSSCC
T ss_pred CCEEEEcCCCCc
Confidence 999999999876
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=6.4e-15 Score=115.03 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=96.6
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
..+++++++|.++. +|..+ .++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 46899999999985 45444 3889999999999998889999999999999999999998777788999999999999
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCccccc
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 118 (333)
+|++++.++..+ ..+++|++|++++|.++..
T Consensus 87 ~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAF--DNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTT--TTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHh--cCCCCCCEEEeCCCCCCCC
Confidence 999999988776 7899999999999998854
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=3.2e-15 Score=117.52 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=50.1
Q ss_pred hccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCcc--ccccCCCCcEEeCCCCcCCCCCCCC----ccccCc
Q 039161 167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPV--SFENMTALESLDLSFNKLDGRIPEQ----LLSVTA 240 (333)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~ 240 (333)
+.|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|+.|++++|.++ ..|.. +..+++
T Consensus 64 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~ 141 (176)
T 1a9n_A 64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQ 141 (176)
T ss_dssp SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTT
T ss_pred CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCc
Confidence 44455555555555333344456666666666666665 3333 5666666777777777666 34443 666777
Q ss_pred cceeecccCcce
Q 039161 241 LALLNLSYNRLW 252 (333)
Q Consensus 241 L~~L~l~~N~l~ 252 (333)
|+.||+++|.+.
T Consensus 142 L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 142 VRVLDFQKVKLK 153 (176)
T ss_dssp CSEETTEECCHH
T ss_pred cceeCCCcCCHH
Confidence 777777777664
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=2.6e-17 Score=132.12 Aligned_cols=150 Identities=19% Similarity=0.244 Sum_probs=91.9
Q ss_pred hhCCCCccEEECCCCcCcCCCCh------hhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCC
Q 039161 25 FANASHLRSLDLYSNKLEGPLPR------SLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNI 98 (333)
Q Consensus 25 ~~~l~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 98 (333)
+.....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++..+. .+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~-~~- 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIEN-LD- 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSS-HH-
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccc-hh-
Confidence 45566777777777777766665 77777788888888887775 45 66777777777777777764331 11
Q ss_pred cccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcc
Q 039161 99 TFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNR 178 (333)
Q Consensus 99 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~ 178 (333)
..+++|++|++++|.+++ +| . + ..+++|+.|++++|.
T Consensus 90 -~~~~~L~~L~L~~N~l~~-l~-~-~---------------------------------------~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 90 -AVADTLEELWISYNQIAS-LS-G-I---------------------------------------EKLVNLRVLYMSNNK 126 (198)
T ss_dssp -HHHHHCSEEEEEEEECCC-HH-H-H---------------------------------------HHHHHSSEEEESEEE
T ss_pred -hcCCcCCEEECcCCcCCc-CC-c-c---------------------------------------ccCCCCCEEECCCCc
Confidence 334566666666666553 11 0 0 014566666666666
Q ss_pred cCccch-hhhhCCCCCCEEEccCCcCCCCCcc----------ccccCCCCcEEe
Q 039161 179 FHGEIS-EVLGNFKSLKVLNLSHNSLTGNIPV----------SFENMTALESLD 221 (333)
Q Consensus 179 l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~ 221 (333)
+++..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.||
T Consensus 127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 663222 3566666666666666666544433 145555555554
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=1.6e-14 Score=113.15 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=94.7
Q ss_pred ccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161 7 LITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS 86 (333)
Q Consensus 7 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 86 (333)
-+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999997 4555443 8999999999999988899999999999999999999977666788999999999999
Q ss_pred CcCCCCCCCCCCcccCCcccEEEcCCCccccc
Q 039161 87 NQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118 (333)
Q Consensus 87 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 118 (333)
|++++.++..+ ..+++|++|++++|.+...
T Consensus 91 N~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAF--DNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTT--TTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHh--ccccCCCEEEeCCCCcccc
Confidence 99999887766 7899999999999998843
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=1.9e-17 Score=132.91 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=122.3
Q ss_pred hcCCCCCcEEEccCCcCCCcccc------cccCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcc
Q 039161 49 LAKYIKLEVVNVENNMISDSFPC------WMGSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRR 122 (333)
Q Consensus 49 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 122 (333)
+.....++.++++.+.+++..|. .+..+++|++|++++|.+++.+ .+ ..+++|++|++++|.++ .+|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~--~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SL--SGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CH--HHHTTCCEEEEEEEEEC-SCSSH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--cc--ccCCCCCEEECCCCCcc-cccch
Confidence 45566777788888888777665 8889999999999999998854 33 77899999999999887 44421
Q ss_pred cccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCc
Q 039161 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNS 202 (333)
Q Consensus 123 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 202 (333)
+ ..+++|++|++++|++++ +| .+..+++|++|++++|.
T Consensus 89 -~---------------------------------------~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 89 -D---------------------------------------AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp -H---------------------------------------HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred -h---------------------------------------hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence 1 115789999999999985 55 58888999999999999
Q ss_pred CCCCCc-cccccCCCCcEEeCCCCcCCCCCCCC----------ccccCccceeecccCcce
Q 039161 203 LTGNIP-VSFENMTALESLDLSFNKLDGRIPEQ----------LLSVTALALLNLSYNRLW 252 (333)
Q Consensus 203 l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~----------~~~l~~L~~L~l~~N~l~ 252 (333)
+++..+ ..+..+++|++|++++|.+.+..|.. +..+++|+.|| +|.++
T Consensus 127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 985433 47888999999999999998665543 67788888886 66664
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=2e-14 Score=112.66 Aligned_cols=89 Identities=20% Similarity=0.163 Sum_probs=80.7
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
.+.|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.|++..+..+..+++|+.|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 46788999999999988899999999999999999999987777889999999999999999976666799999999999
Q ss_pred cccCcceec
Q 039161 246 LSYNRLWGR 254 (333)
Q Consensus 246 l~~N~l~~~ 254 (333)
+++|++.+.
T Consensus 112 L~~N~~~c~ 120 (174)
T 2r9u_A 112 LYNNPWDCE 120 (174)
T ss_dssp CCSSCBCTT
T ss_pred eCCCCcccc
Confidence 999999743
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=1e-15 Score=143.32 Aligned_cols=66 Identities=18% Similarity=0.152 Sum_probs=41.8
Q ss_pred hhCCCCCCEEEccCCcCCCCCcccccc-CCCCcEEeCCCCcCCCCCCCCc-cccCccceeecccCccee
Q 039161 187 LGNFKSLKVLNLSHNSLTGNIPVSFEN-MTALESLDLSFNKLDGRIPEQL-LSVTALALLNLSYNRLWG 253 (333)
Q Consensus 187 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~ 253 (333)
+..+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++.....+ ..+++|+.|++++|.+++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 44555666666654 444333333433 6778888888888765444333 567888888998888853
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=7e-16 Score=144.46 Aligned_cols=87 Identities=10% Similarity=0.055 Sum_probs=50.5
Q ss_pred hhhccceEEccCcccCccc-hhhhhCCCCCCEEEccCCcCCCC-CccccccCCCCcEEeCCC---------CcCCCCCCC
Q 039161 165 IFVMFRAMDFSSNRFHGEI-SEVLGNFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSF---------NKLDGRIPE 233 (333)
Q Consensus 165 ~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~~~~ 233 (333)
.+++|++|++++|.+++.. +..+..+++|++|++++| +... ++.....+++|++|++++ +.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 4788999999998876433 333567888888888877 3321 222223467777777732 344332111
Q ss_pred Cc-cccCccceeecccCcce
Q 039161 234 QL-LSVTALALLNLSYNRLW 252 (333)
Q Consensus 234 ~~-~~l~~L~~L~l~~N~l~ 252 (333)
.+ ..+++|+.|++..|.++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMT 385 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCC
T ss_pred HHHHhchhHHHHHHhcCCcC
Confidence 12 23555666666555554
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=1.3e-15 Score=133.95 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=33.9
Q ss_pred hhccceEEccCcccCcc----chhhhhCCCCCCEEEccCCcCCCCC----ccccccCCCCcEEeCCCCcCCC
Q 039161 166 FVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFNKLDG 229 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~ 229 (333)
.+.|++|+|++|.+++. ++..+...++|++|+|++|.++... +..+...++|++|+|++|.|++
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 34455666666655432 2334455556666666666665322 2233344566666666666654
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.41 E-value=8.2e-13 Score=115.26 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=94.2
Q ss_pred cEEECcCC-ccccccchhhhCCCCccEEECCC-CcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcc
Q 039161 8 ITLHLENN-SLEGHIHNTFANASHLRSLDLYS-NKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLR 85 (333)
Q Consensus 8 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 85 (333)
..++.+++ +++. +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45789998 8985 566 99999999999996 99998888999999999999999999999888899999999999999
Q ss_pred cCcCCCCCCCCCCcccCCcccEEEcCCCccccc
Q 039161 86 SNQFDCPPCNSNITFPFQALRIIDLSHTEFTGF 118 (333)
Q Consensus 86 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 118 (333)
+|++++.++..+ ..++ |+.|++.+|.+...
T Consensus 89 ~N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTV--QGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTT--CSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHc--ccCC-ceEEEeeCCCccCC
Confidence 999999887765 4444 99999999998854
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=7.8e-13 Score=115.40 Aligned_cols=86 Identities=22% Similarity=0.209 Sum_probs=63.7
Q ss_pred hhccceEEccC-cccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCcccee
Q 039161 166 FVMFRAMDFSS-NRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 244 (333)
Q Consensus 166 ~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 244 (333)
+.+|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|.|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 45677788875 777766667777777888888888888777777777777888888888887755555555554 7778
Q ss_pred ecccCcce
Q 039161 245 NLSYNRLW 252 (333)
Q Consensus 245 ~l~~N~l~ 252 (333)
++++|++.
T Consensus 109 ~l~~N~~~ 116 (347)
T 2ifg_A 109 VLSGNPLH 116 (347)
T ss_dssp ECCSSCCC
T ss_pred EeeCCCcc
Confidence 88887776
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=5.2e-15 Score=130.04 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=112.8
Q ss_pred CCCCcEEEccCCcCCCccccccc-----CCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccC
Q 039161 52 YIKLEVVNVENNMISDSFPCWMG-----SLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPS 126 (333)
Q Consensus 52 l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 126 (333)
+++|+.|+|++|.++......+. ..++|++|+|++|.++......+ ...+++|+.|++++|.++......
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~L~~L~~L~Ls~n~l~~~~~~~---- 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLRARKLGLQLNSLGPEACKD---- 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-HHHHHTEEEEECCSSCCCHHHHHH----
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-HHHHHhccHhhcCCCCCCHHHHHH----
Confidence 35678888888887753333222 22578888888887653222111 123567889999998876332111
Q ss_pred hHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCcc----chhhhhCCCCCCEEEccCCc
Q 039161 127 MEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGE----ISEVLGNFKSLKVLNLSHNS 202 (333)
Q Consensus 127 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~ 202 (333)
+... +....+.|++|++++|.++.. ++..+...++|++|+|++|.
T Consensus 146 ---L~~~----------------------------L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 146 ---LRDL----------------------------LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp ---HHHH----------------------------HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred ---HHHH----------------------------HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 1000 001146799999999998742 44556788999999999999
Q ss_pred CCCCC----ccccccCCCCcEEeCCCCcCCCC----CCCCccccCccceeecccCccee
Q 039161 203 LTGNI----PVSFENMTALESLDLSFNKLDGR----IPEQLLSVTALALLNLSYNRLWG 253 (333)
Q Consensus 203 l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~ 253 (333)
++... +..+...++|++|+|++|.|++. +...+...++|+.|++++|.|+.
T Consensus 195 l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 195 LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 98533 45667788999999999999863 33344567899999999999963
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.19 E-value=2e-10 Score=101.96 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=41.9
Q ss_pred hhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccC
Q 039161 185 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 249 (333)
Q Consensus 185 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N 249 (333)
..|..+.+|+.+.+..+ +..+...+|.++.+|+.+++.++ ++.+...+|.++.+|+.+++..+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 34666777777777654 55455667777777777777644 55455667777777777777655
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.12 E-value=6.3e-11 Score=103.28 Aligned_cols=190 Identities=13% Similarity=0.122 Sum_probs=109.7
Q ss_pred hhhhCCCCccEEECCCCcCc---------CCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCC
Q 039161 23 NTFANASHLRSLDLYSNKLE---------GPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPP 93 (333)
Q Consensus 23 ~~~~~l~~L~~L~Ls~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 93 (333)
.+...+++|+.|.+...... +.+...+..+++|+.|.+++|.-. ..+. + .+++|++|++..+.+....
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH
Confidence 34556788888888654321 124455667788888888877311 1222 3 3788888888877765322
Q ss_pred CCCCCcccCCcccEEEcCC--CcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccce
Q 039161 94 CNSNITFPFQALRIIDLSH--TEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRA 171 (333)
Q Consensus 94 ~~~~~~~~l~~L~~L~ls~--n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 171 (333)
...+....+++|+.|+|+. |...+.. ....+..+-. ...+++|+.
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~------~~~~l~~~l~---------------------------~~~~p~Lr~ 256 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDG------DMNVFRPLFS---------------------------KDRFPNLKW 256 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCS------CGGGTGGGSC---------------------------TTTCTTCCE
T ss_pred HHHHHHccCCCCcEEEEeccccccccch------hHHHHHHHHh---------------------------cCCCCCcCE
Confidence 1112112578888888753 2211110 0111111000 011678888
Q ss_pred EEccCcccCccchhhhh---CCCCCCEEEccCCcCCCCC----ccccccCCCCcEEeCCCCcCCCCCCCCccc-cCccce
Q 039161 172 MDFSSNRFHGEISEVLG---NFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFNKLDGRIPEQLLS-VTALAL 243 (333)
Q Consensus 172 L~ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~ 243 (333)
|++++|.+.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|+|++|.+++..-..+.. + ...
T Consensus 257 L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~ 334 (362)
T 2ra8_A 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMK 334 (362)
T ss_dssp EEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSE
T ss_pred EeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCE
Confidence 88888877644433333 4678888888888887532 333455688888888888877533222222 1 245
Q ss_pred eecccCc
Q 039161 244 LNLSYNR 250 (333)
Q Consensus 244 L~l~~N~ 250 (333)
++++++.
T Consensus 335 ~~~~~~~ 341 (362)
T 2ra8_A 335 IDVSDSQ 341 (362)
T ss_dssp EECCSBC
T ss_pred EEecCCc
Confidence 6776665
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.11 E-value=2.1e-11 Score=106.27 Aligned_cols=181 Identities=14% Similarity=0.185 Sum_probs=116.1
Q ss_pred CCccEEECCCCcCcC-CC-------ChhhcCCCCCcEEEccCCcCC---------CcccccccCCCCCCEEEcccCcCCC
Q 039161 29 SHLRSLDLYSNKLEG-PL-------PRSLAKYIKLEVVNVENNMIS---------DSFPCWMGSLSELKILVLRSNQFDC 91 (333)
Q Consensus 29 ~~L~~L~Ls~n~l~~-~~-------p~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~ 91 (333)
..++.|.+......+ .. ..+..++++|+.|.+...... +.+...+..+|+|+.|++++|.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 457788887665442 11 233456789999998765331 1233455678999999998873111
Q ss_pred CCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccce
Q 039161 92 PPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRA 171 (333)
Q Consensus 92 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 171 (333)
.. . ..+++|+.|++..+.++... +..+.. . .+++|+.
T Consensus 187 l~--~---~~~~~L~~L~L~~~~l~~~~-------l~~l~~---~----------------------------~lp~L~~ 223 (362)
T 2ra8_A 187 IG--K---KPRPNLKSLEIISGGLPDSV-------VEDILG---S----------------------------DLPNLEK 223 (362)
T ss_dssp CC--S---CBCTTCSEEEEECSBCCHHH-------HHHHHH---S----------------------------BCTTCCE
T ss_pred ec--c---ccCCCCcEEEEecCCCChHH-------HHHHHH---c----------------------------cCCCCcE
Confidence 11 1 23789999999888765321 111110 0 1577888
Q ss_pred EEccC--cccCcc-----chhhh--hCCCCCCEEEccCCcCCCCCccccc---cCCCCcEEeCCCCcCCCC----CCCCc
Q 039161 172 MDFSS--NRFHGE-----ISEVL--GNFKSLKVLNLSHNSLTGNIPVSFE---NMTALESLDLSFNKLDGR----IPEQL 235 (333)
Q Consensus 172 L~ls~--n~l~~~-----~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~----~~~~~ 235 (333)
|+|+. |...+. +...+ ..+++|++|+|++|.+....+..+. .+++|++|+|+.|.+.+. ++..+
T Consensus 224 L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L 303 (362)
T 2ra8_A 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV 303 (362)
T ss_dssp EEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH
T ss_pred EEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc
Confidence 88753 221111 11222 2578999999999998754333332 478999999999999864 34445
Q ss_pred cccCccceeecccCcce
Q 039161 236 LSVTALALLNLSYNRLW 252 (333)
Q Consensus 236 ~~l~~L~~L~l~~N~l~ 252 (333)
..+++|+.|++++|.++
T Consensus 304 ~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 304 DKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHTTCSEEECCSBBCC
T ss_pred ccCCcceEEECCCCcCC
Confidence 66789999999999886
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.09 E-value=1.2e-09 Score=96.80 Aligned_cols=80 Identities=11% Similarity=0.170 Sum_probs=44.4
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
+..|+.+.+..+... ....+|..++.|+.+.+. +.+..+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.
T Consensus 264 c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 264 CAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp CSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 456666666544322 444556666666666664 3344344556666666666666543 4434455566666666666
Q ss_pred ccc
Q 039161 246 LSY 248 (333)
Q Consensus 246 l~~ 248 (333)
+..
T Consensus 341 ip~ 343 (394)
T 4gt6_A 341 IPS 343 (394)
T ss_dssp ECT
T ss_pred ECc
Confidence 543
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.01 E-value=1.4e-09 Score=96.45 Aligned_cols=219 Identities=12% Similarity=0.055 Sum_probs=143.3
Q ss_pred ccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEcccCcCCCCCCCCCCc
Q 039161 20 HIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQFDCPPCNSNIT 99 (333)
Q Consensus 20 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 99 (333)
+...+|.++.+|+.+.+.++. +.....+|.++.+|+.+++..+ ++.....+|..+..|+.+.+..+.... ....
T Consensus 153 i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i-~~~~--- 226 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL-GDFA--- 226 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE-CTTT---
T ss_pred cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe-ehhh---
Confidence 445678888999999998654 3356677888889998888765 554555677788888887776543221 1111
Q ss_pred ccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCce---EEee--cCcchhhhhhhhccceEEc
Q 039161 100 FPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESI---TVAM--KGHDFQLQNIFVMFRAMDF 174 (333)
Q Consensus 100 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~L~~L~l 174 (333)
....+|+.+.+.... + .+....+..+..++.+.+..+...+....+.... .... ..........+.+|+.+.+
T Consensus 227 ~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKL 304 (394)
T ss_dssp TTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEE
T ss_pred cccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecccccccccccccccc
Confidence 234566666664332 2 2333445555666665555544444333322111 0000 0111122233778999998
Q ss_pred cCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccC
Q 039161 175 SSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 249 (333)
Q Consensus 175 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N 249 (333)
..+ ++.....+|..+++|+.+++..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+++..+
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 765 66566778999999999999754 77677789999999999999887 66567789999999999998765
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.93 E-value=6.6e-09 Score=92.07 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=83.2
Q ss_pred cccChHHhhhhcccCcccccccccccCceEEeecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCc
Q 039161 123 IFPSMEAMKNVDEQGRLEYMGRAFCDESITVAMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNS 202 (333)
Q Consensus 123 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 202 (333)
.|..+..|+.+.+......++...+.. +..|+.+.+. +.++.....+|..+.+|+.++|..+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~----------------c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~- 321 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMN----------------CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG- 321 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTT----------------CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-
T ss_pred eeeecccccEEecccccceecCccccc----------------ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-
Confidence 466667777777766555555444433 6788888886 4455466678999999999999865
Q ss_pred CCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceeecccCcc
Q 039161 203 LTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 251 (333)
Q Consensus 203 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~N~l 251 (333)
++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++..
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 66566788999999999999765 6656677899999999999998765
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.82 E-value=8.1e-08 Score=84.56 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=48.1
Q ss_pred hhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCCCccccCccceee
Q 039161 166 FVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 245 (333)
Q Consensus 166 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 245 (333)
+..|+.+.+..+ ++.....+|..+.+|+.+.+..+ +......+|.++.+|+.+.+.++.++.+....|.++.+|+.++
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred CccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 455666666544 44344455666666666666533 4434445666666666666666666645555666666666666
Q ss_pred cccC
Q 039161 246 LSYN 249 (333)
Q Consensus 246 l~~N 249 (333)
+..+
T Consensus 317 lp~~ 320 (379)
T 4h09_A 317 LPTA 320 (379)
T ss_dssp CCTT
T ss_pred cCcc
Confidence 6543
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.68 E-value=2.7e-09 Score=84.05 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=76.5
Q ss_pred cccEEECcCC-ccccc----cchhhhCCCCccEEECCCCcCcCC----CChhhcCCCCCcEEEccCCcCCCc----cccc
Q 039161 6 ELITLHLENN-SLEGH----IHNTFANASHLRSLDLYSNKLEGP----LPRSLAKYIKLEVVNVENNMISDS----FPCW 72 (333)
Q Consensus 6 ~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~ 72 (333)
.|++|+|++| .+... +...+...++|++|+|++|.++.. +...+...++|++|+|++|.|++. +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 6888888888 87643 334556678888899998888642 334455667888899988888754 3445
Q ss_pred ccCCCCCCEEEc--ccCcCCCCCCCCC--CcccCCcccEEEcCCCccc
Q 039161 73 MGSLSELKILVL--RSNQFDCPPCNSN--ITFPFQALRIIDLSHTEFT 116 (333)
Q Consensus 73 ~~~l~~L~~L~L--~~n~l~~~~~~~~--~~~~l~~L~~L~ls~n~l~ 116 (333)
+...++|++|+| ++|.+.......+ .....++|++|++++|.+.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 666778888888 7787764321111 1133577888888888775
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.65 E-value=2.2e-08 Score=82.94 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=72.6
Q ss_pred cccE--EECcCCccc---cccchhhhCCCCccEEECCCCcCcC--CCChhhcCCCCCcEEEccCCcCCCcccccccCCC-
Q 039161 6 ELIT--LHLENNSLE---GHIHNTFANASHLRSLDLYSNKLEG--PLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLS- 77 (333)
Q Consensus 6 ~L~~--L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~- 77 (333)
.|+. ++++.|... ...+....++++|++|+|++|++++ .+|..+..+++|+.|+|++|.+++. ..+..+.
T Consensus 142 ~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~ 219 (267)
T 3rw6_A 142 DLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG 219 (267)
T ss_dssp HHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT
T ss_pred chhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhccc
Confidence 3444 677777433 3333333678999999999999987 4456778899999999999999864 2233333
Q ss_pred -CCCEEEcccCcCCCCCCCC-----CCcccCCcccEEEc
Q 039161 78 -ELKILVLRSNQFDCPPCNS-----NITFPFQALRIIDL 110 (333)
Q Consensus 78 -~L~~L~L~~n~l~~~~~~~-----~~~~~l~~L~~L~l 110 (333)
+|++|+|++|.+.+..+.. .....+++|+.||-
T Consensus 220 l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 9999999999987644321 12256888988864
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=6.8e-09 Score=81.75 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=10.7
Q ss_pred cccCCCCCCEEEcccC-cCC
Q 039161 72 WMGSLSELKILVLRSN-QFD 90 (333)
Q Consensus 72 ~~~~l~~L~~L~L~~n-~l~ 90 (333)
.+...++|++|+|++| .+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCC
T ss_pred HHhcCCCCCEEEecCCCCCC
Confidence 3445566666666665 543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.53 E-value=9.5e-08 Score=79.13 Aligned_cols=67 Identities=30% Similarity=0.315 Sum_probs=39.1
Q ss_pred hCCCCCCEEEccCCcCCC--CCccccccCCCCcEEeCCCCcCCCCCCCCccccC--ccceeecccCcceecCC
Q 039161 188 GNFKSLKVLNLSHNSLTG--NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT--ALALLNLSYNRLWGRIP 256 (333)
Q Consensus 188 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~p 256 (333)
..+++|+.|+|++|.+++ .++..+..+++|+.|+|++|.|++. ..+..+. +|+.|++++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345666666666666665 2334555666666666666666643 2223333 66666666766665554
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.44 E-value=2e-06 Score=75.63 Aligned_cols=218 Identities=13% Similarity=0.091 Sum_probs=141.9
Q ss_pred cccEEECcCCccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCcCCC------------cccccc
Q 039161 6 ELITLHLENNSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNMISD------------SFPCWM 73 (333)
Q Consensus 6 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------~~~~~~ 73 (333)
+|+.+.+..+ ++.+...+|.+ ..++.+.+..+ ++.....+|..+..++.+....+.... .....+
T Consensus 114 ~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 114 DLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred CcccccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 4677777654 33344455655 46777777654 444566778888888888876544321 122234
Q ss_pred cCCCCCCEEEcccCcCCCCCCCCCCcccCCcccEEEcCCCcccccCCcccccChHHhhhhcccCcccccccccccCceEE
Q 039161 74 GSLSELKILVLRSNQFDCPPCNSNITFPFQALRIIDLSHTEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGRAFCDESITV 153 (333)
Q Consensus 74 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 153 (333)
.....+..+.+.... .......+ ....+|+.+.+..+ ++ .+....+..+..|+.+.+..+...++...+..
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f--~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~---- 261 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGF--SYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKNVTSIGSFLLQN---- 261 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTT--TTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTTCCEECTTTTTT----
T ss_pred cccccccccccccce-eEEeeccc--ccccccceeeeccc-ee-EEccccccCCccceEEEcCCCccEeCccccce----
Confidence 455566666554432 11222222 45667777777654 22 33444566677777777766655555444433
Q ss_pred eecCcchhhhhhhhccceEEccCcccCccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCCCCCCC
Q 039161 154 AMKGHDFQLQNIFVMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 233 (333)
Q Consensus 154 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 233 (333)
+..|+.+.+..+ +......+|..+++|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.+...
T Consensus 262 ------------~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 327 (379)
T 4h09_A 262 ------------CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVY 327 (379)
T ss_dssp ------------CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred ------------eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHH
Confidence 567788887654 55455667889999999999988888777888999999999999765 6656677
Q ss_pred CccccCccceeecccC
Q 039161 234 QLLSVTALALLNLSYN 249 (333)
Q Consensus 234 ~~~~l~~L~~L~l~~N 249 (333)
+|.++.+|+.+.+..+
T Consensus 328 aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 328 AFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTCTTCCCCCCCTT
T ss_pred HhhCCCCCCEEEECCc
Confidence 8999999999888654
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=6.4e-08 Score=74.54 Aligned_cols=84 Identities=12% Similarity=0.047 Sum_probs=53.9
Q ss_pred CCccEEECCCCcCcCCCChhhcCCCCCcEEEccCCc-CCCcccccccCC----CCCCEEEcccCc-CCCCCCCCCCcccC
Q 039161 29 SHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVENNM-ISDSFPCWMGSL----SELKILVLRSNQ-FDCPPCNSNITFPF 102 (333)
Q Consensus 29 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~~~l 102 (333)
-.|++||++++.++..--..+.++++|++|+|++|. +++..-..+..+ ++|++|+|++|. ++...-..+ ..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--HHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--GGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH--hcC
Confidence 457788888777775555556777788888888774 665444445543 367888887764 543221122 456
Q ss_pred CcccEEEcCCCc
Q 039161 103 QALRIIDLSHTE 114 (333)
Q Consensus 103 ~~L~~L~ls~n~ 114 (333)
++|++|+++++.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 788888887764
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=2e-07 Score=71.71 Aligned_cols=84 Identities=10% Similarity=0.064 Sum_probs=67.9
Q ss_pred hccceEEccCcccCccchhhhhCCCCCCEEEccCCc-CCCCCccccccC----CCCcEEeCCCCc-CCCCCCCCccccCc
Q 039161 167 VMFRAMDFSSNRFHGEISEVLGNFKSLKVLNLSHNS-LTGNIPVSFENM----TALESLDLSFNK-LDGRIPEQLLSVTA 240 (333)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 240 (333)
..|+.||++++.++..--..+..+++|++|+|++|. ++...-..+..+ ++|++|+|++|. |++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999987766778899999999999995 775444445553 479999999984 88755556778999
Q ss_pred cceeecccCc
Q 039161 241 LALLNLSYNR 250 (333)
Q Consensus 241 L~~L~l~~N~ 250 (333)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999985
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.42 E-value=0.00014 Score=56.92 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=46.9
Q ss_pred hhCCCCccEEECCCC-cCcC----CCChhhcCCCCCcEEEccCCcCCCcccc----cccCCCCCCEEEcccCcCCCCCCC
Q 039161 25 FANASHLRSLDLYSN-KLEG----PLPRSLAKYIKLEVVNVENNMISDSFPC----WMGSLSELKILVLRSNQFDCPPCN 95 (333)
Q Consensus 25 ~~~l~~L~~L~Ls~n-~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~ 95 (333)
+.+-+.|++|+|++| .|.. .+..++...+.|+.|+|++|.+.+.... .+..-+.|++|+|++|.+......
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344566777777664 5542 1333445556677777777776643322 233446677777777766432111
Q ss_pred CC--CcccCCcccEEEcCCC
Q 039161 96 SN--ITFPFQALRIIDLSHT 113 (333)
Q Consensus 96 ~~--~~~~l~~L~~L~ls~n 113 (333)
.+ ....-+.|++|++++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 10 0022345777777654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.26 E-value=0.00053 Score=50.04 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=16.6
Q ss_pred CCcEEEccCCcCCCcccccccCCCCCCEEEcccCcC
Q 039161 54 KLEVVNVENNMISDSFPCWMGSLSELKILVLRSNQF 89 (333)
Q Consensus 54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 89 (333)
+|++|+|++|.|+...+..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 344455555554443333444444444444444443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.24 E-value=0.00067 Score=49.51 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=37.0
Q ss_pred ceEEccCcccC-ccchhhhhCCCCCCEEEccCCcCCCCCccccccCCCCcEEeCCCCcCC
Q 039161 170 RAMDFSSNRFH-GEISEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 228 (333)
Q Consensus 170 ~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 228 (333)
..++.++++++ ..+|..+ .++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777765 2444332 235777777777777666666777777777777777665
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.20 E-value=0.00016 Score=56.62 Aligned_cols=84 Identities=13% Similarity=0.170 Sum_probs=58.1
Q ss_pred hhccceEEccCc-ccCc----cchhhhhCCCCCCEEEccCCcCCCCC----ccccccCCCCcEEeCCCCcCCCC----CC
Q 039161 166 FVMFRAMDFSSN-RFHG----EISEVLGNFKSLKVLNLSHNSLTGNI----PVSFENMTALESLDLSFNKLDGR----IP 232 (333)
Q Consensus 166 ~~~L~~L~ls~n-~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~ 232 (333)
.+.|++|+|++| ++.. .+.+.+..-+.|+.|+|++|.+.... .+.+..-+.|++|+|++|.|.+. +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 467888888875 6653 24555666778888888888887432 33444567888888888888753 23
Q ss_pred CCccccCccceeecccC
Q 039161 233 EQLLSVTALALLNLSYN 249 (333)
Q Consensus 233 ~~~~~l~~L~~L~l~~N 249 (333)
+.+..-+.|+.|+|++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 34455566888888765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=83.46 E-value=2.5 Score=28.68 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=20.7
Q ss_pred CcCCCChhhcCCCCCcEEEccCCcCCCcccccccCCCCCCEEEccc
Q 039161 41 LEGPLPRSLAKYIKLEVVNVENNMISDSFPCWMGSLSELKILVLRS 86 (333)
Q Consensus 41 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 86 (333)
++.+-..+|.+|.+|+.+.+-.+ ++.....+|..|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33333444555555555554432 2323344555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.54 E-value=3.1 Score=28.18 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=33.2
Q ss_pred CccccccchhhhCCCCccEEECCCCcCcCCCChhhcCCCCCcEEEccC
Q 039161 15 NSLEGHIHNTFANASHLRSLDLYSNKLEGPLPRSLAKYIKLEVVNVEN 62 (333)
Q Consensus 15 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 62 (333)
..++.+...+|.++..|+.+.+..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3455566677888888888888764 4545566778888888887765
Done!