BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039162
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|B Chain B, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|C Chain C, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|D Chain D, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
Length = 391
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/311 (19%), Positives = 117/311 (37%), Gaps = 54/311 (17%)
Query: 66 RLLLALYHPRNRYLLHLAADASDDERLKLXXXXXXXXXXXXFGNVDVVGKPDRVNFVGSS 125
RLL A+Y P+N Y +H+ D + + F NV V + + V + +
Sbjct: 101 RLLRAIYMPQNFYCIHV------DRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWT 154
Query: 126 NXXXXXXXXXXXXXXDKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGW 185
+ W + I LS +D+P+ T ++ + N
Sbjct: 155 RVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK 214
Query: 186 KESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRS 245
+E + + +VD L + I +A TP +GS +FV++R
Sbjct: 215 EERWKKRYAVVDGKL---TNTGIVKAPPPLKTP--------------LFSGSAYFVVTRE 257
Query: 246 FLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNAPE----------FKNTTINSDL 295
++ + V +N+ + L+ + + P E + + I PE + + +N+
Sbjct: 258 YVGY-VLENENIQK-LMEWAQDTYSPDE-FLWATIQRIPEVPGSFPSSNKYDLSDMNAIA 314
Query: 296 RYMIWD-----------NPPKMEPHFLNVS-----DYDQMVQSGVVFARQFQKD-DP-AL 337
R++ W PP H +V D M++ +FA +F D DP A+
Sbjct: 315 RFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAI 374
Query: 338 NMIDEKILKRG 348
+DE + ++
Sbjct: 375 QCLDEHLRRKA 385
>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAK|B Chain B, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAM|A Chain A, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|B Chain B, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|C Chain C, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|D Chain D, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
Length = 391
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 116/311 (37%), Gaps = 54/311 (17%)
Query: 66 RLLLALYHPRNRYLLHLAADASDDERLKLXXXXXXXXXXXXFGNVDVVGKPDRVNFVGSS 125
RLL A+Y P+N Y +H+ D + + F NV V + + V + +
Sbjct: 101 RLLRAIYMPQNFYCIHV------DRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWT 154
Query: 126 NXXXXXXXXXXXXXXDKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGW 185
+ W + I L +D+P+ T ++ + N
Sbjct: 155 RVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK 214
Query: 186 KESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRS 245
+E + + +VD L + I +A TP +GS +FV++R
Sbjct: 215 EERWKKRYAVVDGKL---TNTGIVKAPPPLKTP--------------LFSGSAYFVVTRE 257
Query: 246 FLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNAPE----------FKNTTINSDL 295
++ + V +N+ + L+ + + P E + + I PE + + +N+
Sbjct: 258 YVGY-VLENENIQK-LMEWAQDTYSPDE-FLWATIQRIPEVPGSFPSSNKYDLSDMNAIA 314
Query: 296 RYMIWD-----------NPPKMEPHFLNVS-----DYDQMVQSGVVFARQFQKD-DP-AL 337
R++ W PP H +V D M++ +FA +F D DP A+
Sbjct: 315 RFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAI 374
Query: 338 NMIDEKILKRG 348
+DE + ++
Sbjct: 375 QCLDEHLRRKA 385
>pdb|3MBE|D Chain D, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|H Chain H, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 259
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 199 GLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLP 258
GL L S + +TEK PD +K E S I + LS++ + FC WD
Sbjct: 42 GLRLIHYSYVADSTEKGDIPDGYKASRPSQENFSLIL--ELASLSQTAVYFCASSWDRAG 99
Query: 259 RTLLMYF 265
TL YF
Sbjct: 100 NTL--YF 104
>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
pdb|1JCN|B Chain B, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
Length = 514
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 172 RDLNFI---DHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTP 218
RD++F+ DHT+ L + RI+ V+ G+ L ++I Q ++K P
Sbjct: 161 RDIDFLAEKDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLP 210
>pdb|3GUX|A Chain A, Crystal Structure Of A Putative Zn-Dependent Exopeptidase
(Bvu_1317) From Bacteroides Vulgatus Atcc 8482 At 1.80 A
Resolution
pdb|3GUX|B Chain B, Crystal Structure Of A Putative Zn-Dependent Exopeptidase
(Bvu_1317) From Bacteroides Vulgatus Atcc 8482 At 1.80 A
Resolution
Length = 314
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 301 DNPPKMEPH---FLNVSDYDQMVQSGVVFARQFQKDDPALNM-------IDEKILKRGHN 350
DN P + H L V+D V + ARQ QK+ PAL + D I +
Sbjct: 112 DNDPDPKNHHTPILGVNDGASGVGVLLEIARQIQKEQPALGIDIVFFDSEDYGIPEFYDG 171
Query: 351 RAAPGAWCTGQRSWWMDPCTQ 371
+ WC G + W P Q
Sbjct: 172 KYKQDTWCLGSQYWARTPHVQ 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,200,128
Number of Sequences: 62578
Number of extensions: 434385
Number of successful extensions: 910
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 907
Number of HSP's gapped (non-prelim): 5
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)