Query 039162
Match_columns 406
No_of_seqs 208 out of 860
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:55:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 1E-112 2E-117 867.4 38.1 389 3-406 6-421 (421)
2 KOG0799 Branching enzyme [Carb 100.0 1E-64 2.2E-69 521.6 21.4 333 44-404 98-439 (439)
3 PF02485 Branch: Core-2/I-Bran 100.0 7.9E-53 1.7E-57 401.9 19.3 238 50-320 1-244 (244)
4 TIGR03469 HonB hopene-associat 95.0 2.5 5.3E-05 43.3 18.8 106 45-156 37-146 (384)
5 TIGR03472 HpnI hopanoid biosyn 91.8 4 8.6E-05 41.5 14.0 104 47-167 40-148 (373)
6 PRK11204 N-glycosyltransferase 90.8 4.7 0.0001 41.3 13.5 105 45-167 51-159 (420)
7 PRK14583 hmsR N-glycosyltransf 86.6 20 0.00044 37.3 14.9 94 46-157 73-169 (444)
8 TIGR03111 glyc2_xrt_Gpos1 puta 86.5 28 0.00061 36.3 15.9 106 45-167 46-156 (439)
9 PRK14716 bacteriophage N4 adso 85.4 10 0.00022 40.7 12.1 103 46-159 64-174 (504)
10 cd02525 Succinoglycan_BP_ExoA 85.4 11 0.00025 34.5 11.1 99 49-167 1-103 (249)
11 cd06439 CESA_like_1 CESA_like_ 82.4 29 0.00063 32.2 12.7 106 41-168 22-132 (251)
12 PF13641 Glyco_tranf_2_3: Glyc 76.9 5.9 0.00013 36.3 5.9 113 48-178 1-120 (228)
13 PTZ00260 dolichyl-phosphate be 75.5 64 0.0014 32.4 13.4 112 44-168 66-188 (333)
14 PF08660 Alg14: Oligosaccharid 75.4 25 0.00055 32.1 9.5 124 53-180 3-130 (170)
15 cd04187 DPM1_like_bac Bacteria 75.1 33 0.00072 30.1 10.1 93 56-167 4-102 (181)
16 PRK05454 glucosyltransferase M 74.9 1.1E+02 0.0023 34.4 15.9 126 42-178 118-255 (691)
17 cd06437 CESA_CaSu_A2 Cellulose 74.7 31 0.00068 31.8 10.2 103 48-165 1-107 (232)
18 cd02511 Beta4Glucosyltransfera 74.4 42 0.00092 31.2 11.1 94 50-167 2-96 (229)
19 PRK07132 DNA polymerase III su 71.2 42 0.00092 33.5 10.7 94 47-152 16-128 (299)
20 TIGR03030 CelA cellulose synth 71.1 1.1E+02 0.0023 34.3 14.9 115 45-177 128-262 (713)
21 PRK10063 putative glycosyl tra 70.7 84 0.0018 30.0 12.4 101 48-167 1-106 (248)
22 cd02520 Glucosylceramide_synth 70.5 70 0.0015 28.7 11.3 103 48-167 1-108 (196)
23 PF00535 Glycos_transf_2: Glyc 70.4 24 0.00052 29.6 7.7 99 53-169 3-105 (169)
24 COG1216 Predicted glycosyltran 70.4 34 0.00074 33.6 9.9 89 48-154 3-94 (305)
25 cd04179 DPM_DPG-synthase_like 69.1 42 0.00091 29.2 9.3 104 57-178 5-113 (185)
26 cd04184 GT2_RfbC_Mx_like Myxoc 67.6 54 0.0012 29.1 9.8 104 48-167 1-108 (202)
27 cd06421 CESA_CelA_like CESA_Ce 66.8 91 0.002 28.2 11.4 101 48-168 1-107 (234)
28 TIGR01556 rhamnosyltran L-rham 66.4 38 0.00082 32.5 9.1 83 59-157 5-87 (281)
29 cd04186 GT_2_like_c Subfamily 66.0 66 0.0014 27.1 9.7 84 53-157 2-88 (166)
30 PF07521 RMMBL: RNA-metabolisi 65.6 5.8 0.00013 27.8 2.3 27 57-84 16-42 (43)
31 cd06434 GT2_HAS Hyaluronan syn 62.8 87 0.0019 28.5 10.5 91 50-159 2-93 (235)
32 PRK07276 DNA polymerase III su 60.7 54 0.0012 32.7 9.1 58 88-153 86-143 (290)
33 PLN02726 dolichyl-phosphate be 60.3 1.5E+02 0.0032 27.7 11.9 104 45-167 6-115 (243)
34 PRK11234 nfrB bacteriophage N4 59.7 66 0.0014 36.2 10.4 121 45-179 60-188 (727)
35 cd06427 CESA_like_2 CESA_like_ 59.5 1.1E+02 0.0025 28.3 10.8 104 48-167 1-109 (241)
36 PRK06581 DNA polymerase III su 58.2 1.1E+02 0.0023 30.2 10.3 99 46-153 12-128 (263)
37 TIGR02803 ExbD_1 TonB system t 57.2 1.2E+02 0.0026 25.7 11.5 49 61-113 69-119 (122)
38 cd04192 GT_2_like_e Subfamily 57.0 68 0.0015 28.8 8.6 98 53-167 2-104 (229)
39 cd02526 GT2_RfbF_like RfbF is 54.5 1E+02 0.0022 28.1 9.4 94 53-166 2-96 (237)
40 PRK05917 DNA polymerase III su 54.0 79 0.0017 31.5 8.9 80 65-153 52-134 (290)
41 cd02510 pp-GalNAc-T pp-GalNAc- 52.2 1.2E+02 0.0025 29.4 9.8 98 53-167 3-105 (299)
42 PF07747 MTH865: MTH865-like f 47.2 12 0.00025 29.9 1.5 18 150-167 11-28 (75)
43 cd06423 CESA_like CESA_like is 47.2 1.4E+02 0.003 24.6 8.5 92 57-166 5-99 (180)
44 PRK10073 putative glycosyl tra 45.5 2.5E+02 0.0055 28.0 11.2 93 47-157 5-99 (328)
45 cd02537 GT8_Glycogenin Glycoge 44.2 2.3E+02 0.005 26.9 10.3 107 50-164 1-110 (240)
46 cd04185 GT_2_like_b Subfamily 43.9 2.3E+02 0.005 25.1 10.6 89 53-157 2-93 (202)
47 cd00761 Glyco_tranf_GTA_type G 43.4 1.7E+02 0.0037 23.4 10.1 90 53-159 2-93 (156)
48 COG1215 Glycosyltransferases, 42.8 3.7E+02 0.008 27.1 13.2 97 47-159 53-153 (439)
49 cd06913 beta3GnTL1_like Beta 1 42.3 2.6E+02 0.0057 25.2 10.5 104 53-167 2-109 (219)
50 PRK08058 DNA polymerase III su 42.0 1.8E+02 0.0039 29.1 9.6 96 48-152 27-148 (329)
51 cd04196 GT_2_like_d Subfamily 42.0 2.4E+02 0.0053 24.8 11.6 96 53-167 3-101 (214)
52 PRK06871 DNA polymerase III su 42.0 87 0.0019 31.7 7.2 82 64-153 64-146 (325)
53 cd06442 DPM1_like DPM1_like re 41.4 2.3E+02 0.0049 25.4 9.5 96 53-167 2-100 (224)
54 PRK05564 DNA polymerase III su 41.4 1.9E+02 0.0042 28.5 9.6 98 47-152 24-131 (313)
55 PF12273 RCR: Chitin synthesis 41.2 19 0.00041 31.2 2.1 19 6-24 1-19 (130)
56 PRK05986 cob(I)alamin adenolsy 41.0 2.1E+02 0.0046 26.8 9.1 107 61-178 37-153 (191)
57 PRK15489 nfrB bacteriophage N4 39.1 2.2E+02 0.0049 32.0 10.4 115 47-178 70-195 (703)
58 KOG3339 Predicted glycosyltran 37.4 3.6E+02 0.0079 25.5 10.0 113 50-168 40-158 (211)
59 cd06433 GT_2_WfgS_like WfgS an 35.0 3E+02 0.0064 23.7 9.8 86 53-159 3-91 (202)
60 PF11051 Mannosyl_trans3: Mann 33.7 1.3E+02 0.0027 29.5 6.7 99 52-163 4-110 (271)
61 cd00006 PTS_IIA_man PTS_IIA, P 33.3 2.9E+02 0.0064 23.2 9.0 91 52-158 3-96 (122)
62 cd02522 GT_2_like_a GT_2_like_ 33.0 3.4E+02 0.0075 24.1 9.2 89 52-166 3-93 (221)
63 COG4746 Uncharacterized protei 31.8 26 0.00056 28.0 1.2 18 150-167 16-33 (80)
64 PRK08309 short chain dehydroge 31.6 3.5E+02 0.0075 24.6 8.9 84 59-153 31-114 (177)
65 PRK11498 bcsA cellulose syntha 31.6 8.7E+02 0.019 28.1 16.3 111 46-178 258-374 (852)
66 PRK05818 DNA polymerase III su 31.2 1.7E+02 0.0036 28.9 7.0 81 66-153 47-127 (261)
67 PF02572 CobA_CobO_BtuR: ATP:c 28.6 1.9E+02 0.0041 26.6 6.5 107 61-178 18-134 (172)
68 cd06438 EpsO_like EpsO protein 27.4 4.2E+02 0.0091 23.2 11.3 97 53-166 2-102 (183)
69 PRK10714 undecaprenyl phosphat 27.0 6.4E+02 0.014 25.1 13.3 107 46-170 4-115 (325)
70 cd04188 DPG_synthase DPG_synth 26.7 2.7E+02 0.0059 25.0 7.4 92 58-167 6-104 (211)
71 cd02514 GT13_GLCNAC-TI GT13_GL 25.1 6.4E+02 0.014 25.6 10.3 98 50-159 2-113 (334)
72 cd00952 CHBPH_aldolase Trans-o 24.1 5.9E+02 0.013 25.3 9.7 99 59-170 26-129 (309)
73 TIGR03249 KdgD 5-dehydro-4-deo 23.7 4.3E+02 0.0094 25.9 8.6 97 60-170 24-125 (296)
74 PRK14965 DNA polymerase III su 22.6 5.9E+02 0.013 27.8 10.1 97 48-152 37-157 (576)
75 PRK11267 biopolymer transport 22.2 5.3E+02 0.011 22.4 11.1 49 62-114 84-134 (141)
76 PRK14952 DNA polymerase III su 21.8 6.6E+02 0.014 27.6 10.2 97 48-152 34-156 (584)
77 PF02472 ExbD: Biopolymer tran 21.7 1.7E+02 0.0037 24.5 4.7 51 60-114 74-127 (130)
78 COG0848 ExbD Biopolymer transp 21.7 5.6E+02 0.012 22.5 11.9 51 60-114 80-132 (137)
79 PRK07993 DNA polymerase III su 21.0 3.8E+02 0.0082 27.1 7.7 80 65-153 65-147 (334)
80 cd06435 CESA_NdvC_like NdvC_li 21.0 6.2E+02 0.014 22.8 9.7 101 53-169 3-108 (236)
81 PRK00155 ispD 2-C-methyl-D-ery 20.9 6.6E+02 0.014 23.1 9.9 88 61-169 31-120 (227)
82 PF13177 DNA_pol3_delta2: DNA 20.5 4.6E+02 0.0099 23.3 7.4 97 48-153 18-141 (162)
83 PRK11024 colicin uptake protei 20.1 5.8E+02 0.013 22.1 10.5 48 62-113 88-137 (141)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=9.9e-113 Score=867.41 Aligned_cols=389 Identities=48% Similarity=0.900 Sum_probs=359.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhh---c-ccCC-C---------------CCCCCC-----C--CCCCCCCCCceEEEEE
Q 039162 3 AEKRRLFTLFSAALLSLLLLLLYS---F-STFT-S---------------SRPFPS-----V--IHHGAHYPPAFAYYIS 55 (406)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~-~---------------~~~~~~-----~--~~~~~~~p~kiAylIl 55 (406)
+++||+++++++++++++|+++++ . ++.+ + .+.+++ . +.+.++.||||||||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AYLI~ 85 (421)
T PLN03183 6 VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPPVQDKLPRFAYLVS 85 (421)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCCCCCCCCCCCeEEEEEE
Confidence 689999999999999988755443 1 1111 0 011111 1 1133456899999999
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHHHH
Q 039162 56 GGTGDKDRIFRLLLALYHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAA 135 (406)
Q Consensus 56 ~~~~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~ 135 (406)
||++|.+|++|||++||||+|+||||+|+||+..++.++++.+++.|++.+++||+|+++++.|+|||+|||+|||+||+
T Consensus 86 ~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL~~m~ 165 (421)
T PLN03183 86 GSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACA 165 (421)
T ss_pred ecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHHHHHH
Confidence 97799999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEecCCCccccChhHHHHHHhccCCCCceEeccCCCCCccceeecceeeCCcceeeccccccccccCC
Q 039162 136 ILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKR 215 (406)
Q Consensus 136 ~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~~~~~~nFI~~~~~~~wk~~~r~~~~~~d~g~y~~~~~~i~~~~~kR 215 (406)
.||+.+.+|||||||||+||||+||+||++.|+++|+|+|||++++..+|++.+|++++++|||+|..+++.++|.+++|
T Consensus 166 ~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~~~~R 245 (421)
T PLN03183 166 ILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRR 245 (421)
T ss_pred HHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhhhhhc
Confidence 99998899999999999999999999988888889999999999988999999999999999999998888888989999
Q ss_pred CCCCCceeeeccCCCCCCcCcceeEEecHHHHHHhhhccCCchHHHHHHhcCCCCCcchhhhhhhhcCCCCCcccccCce
Q 039162 216 PTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNAPEFKNTTINSDL 295 (406)
Q Consensus 216 ~~P~~~~l~~G~~~~~~~~~gSqW~~LsR~fveyii~~~d~~p~~ll~~f~~t~~pDE~yFqTvl~Ns~~f~~t~vn~~L 295 (406)
.+|.++++|+| |+|++|||+||+||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+||
T Consensus 246 ~~P~~~~lf~G----------S~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nL 315 (421)
T PLN03183 246 SLPTAFKLFTG----------SAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDL 315 (421)
T ss_pred cCCccccccCC----------CceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCce
Confidence 99999999999 99999999999999999999999999999999999999999999999889999999999
Q ss_pred eEEecCCCCCCCCccCCHHHHHHHHccCCeEEecCCCChHHHHHHHHHHhccCCCCCCCCceecCCCCCCCCCccccCCC
Q 039162 296 RYMIWDNPPKMEPHFLNVSDYDQMVQSGVVFARQFQKDDPALNMIDEKILKRGHNRAAPGAWCTGQRSWWMDPCTQWGDV 375 (406)
Q Consensus 296 Ryi~W~~~~~~~P~~l~~~D~~~l~~S~~lFARKF~~d~~lLd~Id~~ll~r~~~~~~~g~w~~~~~~~~~~~c~~~g~~ 375 (406)
|||+|++++++||++|+.+|+++|++|+++|||||+.|++|||+||+++++|.+++++|||||.| +||||+|||+
T Consensus 316 RyI~W~~~~~~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~-----~~~c~~~~~~ 390 (421)
T PLN03183 316 HYISWDNPPKQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG-----KPKCSRVGDP 390 (421)
T ss_pred eEEecCCCCCCCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC-----CCcccccCCc
Confidence 99999999889999999999999999999999999999999999999999999999999999987 6899999999
Q ss_pred CcccCCchhHHHHHHHHHhccCCCCCCCCCC
Q 039162 376 NVLKPGQQATKLEDTITNLLDDWSSQSNQCK 406 (406)
Q Consensus 376 ~~~~pg~~~~~~~~~~~~~~~~~~~~~~~c~ 406 (406)
++|||||||+||++||++||++++||++||+
T Consensus 391 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~c~ 421 (421)
T PLN03183 391 AKIKPGPGAQRLKGLVSRLVLEAKLGQNQCK 421 (421)
T ss_pred CccCCCcHHHHHHHHHHHHhchhccccccCC
Confidence 9999999999999999999999999999996
No 2
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-64 Score=521.63 Aligned_cols=333 Identities=38% Similarity=0.641 Sum_probs=307.8
Q ss_pred CCCCCceEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCc
Q 039162 44 AHYPPAFAYYISGGTGDKDRIFRLLLALYHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVG 123 (406)
Q Consensus 44 ~~~p~kiAylIl~~~~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg 123 (406)
.+.+++.||++++.|+|.++++|+++|+|||+|.||||||++|+++++..+++ +..|++||+|++++..|+|||
T Consensus 98 ~~~~~~~~a~~~~v~kd~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~------L~~cf~NV~v~~k~~~v~~~G 171 (439)
T KOG0799|consen 98 KELKPFPAAFLRVVYKDYEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQ------LASCFPNVIVLPKRESVTYGG 171 (439)
T ss_pred ccccccceEEEEeecccHHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHH------HHhcCCceEEeccccceecCC
Confidence 34556667777767999999999999999999999999999999999977765 788999999999999999999
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHHhccCCCCceEeccCCCCCccceeecceeeCCcceee
Q 039162 124 SSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLA 203 (406)
Q Consensus 124 ~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~~~~~~nFI~~~~~~~wk~~~r~~~~~~d~g~y~~ 203 (406)
+|+++|+|+||+.|++...+|||||||||+|||||||+||.++|+.+ +|.|||+++...+|+..++.++...|++ |+.
T Consensus 172 ~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L-~g~N~i~~~~~~~~~~~~~~k~~~~~~~-~~~ 249 (439)
T KOG0799|consen 172 HSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL-RGANFVEHTSEIGWKLNRKAKWDIIDLK-YFR 249 (439)
T ss_pred chhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc-CCcccccCcccccHHHhcccCCcccccc-hhe
Confidence 99999999999999999889999999999999999999999999876 7999999999999999999998888988 666
Q ss_pred ccccccccccCCCCCCCceeeeccCCCCCCcCcceeEEecHHHHHHhhhccCCchHHHHHHhcCCCCCcchhhhhhhhcC
Q 039162 204 RKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNA 283 (406)
Q Consensus 204 ~~~~i~~~~~kR~~P~~~~l~~G~~~~~~~~~gSqW~~LsR~fveyii~~~d~~p~~ll~~f~~t~~pDE~yFqTvl~Ns 283 (406)
+++.+.+.+ +|+++++++| |.|++|||+||+||+. +++|+++++|++++++|||+||||++||+
T Consensus 250 ~~s~~~~~~----lp~~~ki~~G----------s~~~~LsR~fv~y~i~--~~~~~~ll~~~~~t~~~dE~f~~Tl~~n~ 313 (439)
T KOG0799|consen 250 NKSPLPWVI----LPTALKLFKG----------SAWVSLSRAFVEYLIS--GNLPRTLLMYYNNTYSPDEGFFHTLQCNP 313 (439)
T ss_pred ecCCCcccc----CCCceEEEec----------ceeEEEeHHHHHHHhc--CccHHHHHHHHhCccCcchhhhHhhhccc
Confidence 666666544 8999999999 9999999999999998 58999999999999999999999999998
Q ss_pred CCCCcccccCc--eeEEecCC----CCCCCCccCCHHHHHHHHccCC-eEEecCC--CChHHHHHHHHHHhccCCCCCCC
Q 039162 284 PEFKNTTINSD--LRYMIWDN----PPKMEPHFLNVSDYDQMVQSGV-VFARQFQ--KDDPALNMIDEKILKRGHNRAAP 354 (406)
Q Consensus 284 ~~f~~t~vn~~--LRyi~W~~----~~~~~P~~l~~~D~~~l~~S~~-lFARKF~--~d~~lLd~Id~~ll~r~~~~~~~ 354 (406)
|..+.++++ +||+.|+. ++++||+.++..|...|..++. .|||||. .++++++.+|.+++.+......+
T Consensus 314 --~~~~g~~~~~~lr~~~W~~~~~~~~~~~c~~~~~~~~~cv~g~~~~~~~~k~~~l~~nkvl~~~d~~~i~c~~~~~~~ 391 (439)
T KOG0799|consen 314 --FGMPGVFNDECLRYTNWDRKDVDPPKQHCHSLTVRDFICVFGSGDLPFARKFPHLVANKVLDKFDPELIGCLAEFNRT 391 (439)
T ss_pred --cCCCCcccchhhcceecccccccccccCCcccccccceeeeecchhHHHhhCchhhcccchhccCHHHHhhhhhccCc
Confidence 888889999 99999998 6778999999999999999988 9999999 58999999999999998877789
Q ss_pred CceecCCCCCCCCCccccCCCCcccCCchhHHHHHHHHHhccCCCCCCCC
Q 039162 355 GAWCTGQRSWWMDPCTQWGDVNVLKPGQQATKLEDTITNLLDDWSSQSNQ 404 (406)
Q Consensus 355 g~w~~~~~~~~~~~c~~~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ 404 (406)
|+|| ..++..++|+..++...+.|||++.|++.++..++..++|+..|
T Consensus 392 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (439)
T KOG0799|consen 392 GGWC--DHSLRTLPCSELGDAVKLTPGPGAPRLEELCTPLLSHENFRLYQ 439 (439)
T ss_pred cccc--ccccccccccccccceeeccCCcchhHHhhhhccccchhhhccC
Confidence 9999 67788999999999999999999999999999999999998876
No 3
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=7.9e-53 Score=401.89 Aligned_cols=238 Identities=34% Similarity=0.531 Sum_probs=159.6
Q ss_pred eEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHH
Q 039162 50 FAYYISGGTGDKDRIFRLLLALYHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAA 129 (406)
Q Consensus 50 iAylIl~~~~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 129 (406)
|||||++|+++++++++|++++|+|+|.||||||+|++...+.++.+ +..+++||++++++..|.|||+|+|+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~------~~~~~~nv~~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKK------LISCFPNVHFVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHH------HHCT-TTEEE-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHH------hcccCCceeecccccccccCCccHHHH
Confidence 79999995559999999999999999999999999999888887775 356899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHHhccCCCCceEeccCCCCCccceeecceeeCCcceeecccccc
Q 039162 130 VLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIF 209 (406)
Q Consensus 130 tL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~~~~~~nFI~~~~~~~wk~~~r~~~~~~d~g~y~~~~~~i~ 209 (406)
||.||+.|++..++|||||||||+||||+|+++|.++|+..+.+.+|+++....++....|+.+...++..+..
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~------ 148 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFF------ 148 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEE------
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccc------
Confidence 99999999996679999999999999999999999999876677899998765544332444333323222111
Q ss_pred ccccCCCCCCCceeeeccCCCCCCcCcceeEEecHHHHHHhhhccCCchHHHHHHh-cCCCCCcchhhhhhhhcCCCCCc
Q 039162 210 QATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYF-NNVMLPQEVYFHSVICNAPEFKN 288 (406)
Q Consensus 210 ~~~~kR~~P~~~~l~~G~~~~~~~~~gSqW~~LsR~fveyii~~~d~~p~~ll~~f-~~t~~pDE~yFqTvl~Ns~~f~~ 288 (406)
.++ ++|+| ||||+|||++|+||+. |..+...+++| +++++|||.||||+++|++.|++
T Consensus 149 ---~~~------~~~~G----------SqW~~Ltr~~v~~il~--~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~ 207 (244)
T PF02485_consen 149 ---RKR------TLYKG----------SQWFSLTRDFVEYILD--DPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKD 207 (244)
T ss_dssp ---EEE--------EEE-----------S--EEEHHHHHHHHH---HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B
T ss_pred ---ccc------ccccc----------ceeeEeeHHHHHHhhh--hHHHHHHHHHhhcCccCcchhhHHHhhcccchhcc
Confidence 111 78999 9999999999999996 55555555555 59999999999999999988999
Q ss_pred ccccCceeEEecCCCCCCCCc-----cCCHHHHHHHH
Q 039162 289 TTINSDLRYMIWDNPPKMEPH-----FLNVSDYDQMV 320 (406)
Q Consensus 289 t~vn~~LRyi~W~~~~~~~P~-----~l~~~D~~~l~ 320 (406)
+++++++|||+|++..+.||+ .+|++|+++|+
T Consensus 208 ~~~~~~~r~i~W~~~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 208 TIVNRNLRYIDWSRRGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp -TTTSSSEEE-BTGT-SS---SSEEEE--GGGHHHH-
T ss_pred cccCCCEEEEECCCCCCCCCCeeeeeeeCHHHHHhhC
Confidence 999999999999944455665 45888888874
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=94.96 E-value=2.5 Score=43.28 Aligned_cols=106 Identities=16% Similarity=0.096 Sum_probs=65.8
Q ss_pred CCCCceEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCC-ceee
Q 039162 45 HYPPAFAYYISGGTGDKDRIFRLLLALYH---PRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKP-DRVN 120 (406)
Q Consensus 45 ~~p~kiAylIl~~~~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r-~~V~ 120 (406)
+..|++..+|-+ +++.+.+.++|++|.. |.+.=+|-+|..|++.-.+.++++.+..| ..++++++... ....
T Consensus 37 ~~~p~VSVIIpa-~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~---~~~~i~vi~~~~~~~g 112 (384)
T TIGR03469 37 EAWPAVVAVVPA-RNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG---RGDRLTVVSGQPLPPG 112 (384)
T ss_pred CCCCCEEEEEec-CCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC---CCCcEEEecCCCCCCC
Confidence 455779988887 8889999999999853 43444677787776654444443322111 12378887532 2345
Q ss_pred cCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCcc
Q 039162 121 FVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYP 156 (406)
Q Consensus 121 Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyP 156 (406)
|+|- ..|.-.+++.+-+...+-||++.+.+.+.+
T Consensus 113 ~~Gk--~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 113 WSGK--LWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred Ccch--HHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 6553 334444555554433447899999998886
No 5
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=91.81 E-value=4 Score=41.53 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=60.4
Q ss_pred CCceEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCChHHHHHHHHHhccccccccccc--eEEcCCCceeec
Q 039162 47 PPAFAYYISGGTGDKDRIFRLLLALY---HPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGN--VDVVGKPDRVNF 121 (406)
Q Consensus 47 p~kiAylIl~~~~d~~~l~rLl~aLy---~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~N--V~vv~~r~~V~W 121 (406)
-|++..+|-+ +++.+.+.+.|+++- .|+-.++| +|..+++...+-+++.. ..+++ |.++.......|
T Consensus 40 ~p~VSViiP~-~nee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~~------~~~p~~~i~~v~~~~~~G~ 111 (373)
T TIGR03472 40 WPPVSVLKPL-HGDEPELYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRLR------ADFPDADIDLVIDARRHGP 111 (373)
T ss_pred CCCeEEEEEC-CCCChhHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHHH------HhCCCCceEEEECCCCCCC
Confidence 4568999987 888888888888873 46555555 66656554333333322 24555 555543332333
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHH
Q 039162 122 VGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 122 gg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f 167 (406)
.+ .+.+..++ ++. .+.||++.+.+.+.| +.+-|.+..
T Consensus 112 ~~--K~~~l~~~----~~~-a~ge~i~~~DaD~~~--~p~~L~~lv 148 (373)
T TIGR03472 112 NR--KVSNLINM----LPH-ARHDILVIADSDISV--GPDYLRQVV 148 (373)
T ss_pred Ch--HHHHHHHH----HHh-ccCCEEEEECCCCCc--ChhHHHHHH
Confidence 22 33343343 333 457899888888877 555555443
No 6
>PRK11204 N-glycosyltransferase; Provisional
Probab=90.81 E-value=4.7 Score=41.29 Aligned_cols=105 Identities=10% Similarity=0.109 Sum_probs=62.2
Q ss_pred CCCCceEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeec
Q 039162 45 HYPPAFAYYISGGTGDKDRIFRLLLALY---HPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNF 121 (406)
Q Consensus 45 ~~p~kiAylIl~~~~d~~~l~rLl~aLy---~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~W 121 (406)
+..|+++.+|-+ |++.+.+.+.++++. .|+..++| +|..++++..+.+++. ...++++.++.... .
T Consensus 51 ~~~p~vsViIp~-yne~~~i~~~l~sl~~q~yp~~eiiV-vdD~s~d~t~~~l~~~------~~~~~~v~~i~~~~---n 119 (420)
T PRK11204 51 KEYPGVSILVPC-YNEGENVEETISHLLALRYPNYEVIA-INDGSSDNTGEILDRL------AAQIPRLRVIHLAE---N 119 (420)
T ss_pred CCCCCEEEEEec-CCCHHHHHHHHHHHHhCCCCCeEEEE-EECCCCccHHHHHHHH------HHhCCcEEEEEcCC---C
Confidence 345689999987 888888999888874 45445544 6665655544444432 23467888875222 1
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccC-hhHHHHHH
Q 039162 122 VGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVT-QDDLAHAF 167 (406)
Q Consensus 122 gg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt-~~~i~~~f 167 (406)
+| ...|- ...++. .+.||++.+.+.+.|-.. ..++.+.|
T Consensus 120 ~G--ka~al----n~g~~~-a~~d~i~~lDaD~~~~~d~L~~l~~~~ 159 (420)
T PRK11204 120 QG--KANAL----NTGAAA-ARSEYLVCIDGDALLDPDAAAYMVEHF 159 (420)
T ss_pred CC--HHHHH----HHHHHH-cCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 23 22222 223333 467999999999987432 23444444
No 7
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=86.62 E-value=20 Score=37.32 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=58.3
Q ss_pred CCCceEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecC
Q 039162 46 YPPAFAYYISGGTGDKDRIFRLLLALY---HPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFV 122 (406)
Q Consensus 46 ~p~kiAylIl~~~~d~~~l~rLl~aLy---~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wg 122 (406)
..|+++.+|-+ +++.+.+.++++++- .|+-. +|-+|..++++-.+.+++.. ..++++.++... ..+
T Consensus 73 ~~p~vsViIP~-yNE~~~i~~~l~sll~q~yp~~e-IivVdDgs~D~t~~~~~~~~------~~~~~v~vv~~~---~n~ 141 (444)
T PRK14583 73 GHPLVSILVPC-FNEGLNARETIHAALAQTYTNIE-VIAINDGSSDDTAQVLDALL------AEDPRLRVIHLA---HNQ 141 (444)
T ss_pred CCCcEEEEEEe-CCCHHHHHHHHHHHHcCCCCCeE-EEEEECCCCccHHHHHHHHH------HhCCCEEEEEeC---CCC
Confidence 34689999998 888888988888874 35545 45566666555444444422 245678776421 123
Q ss_pred cchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccc
Q 039162 123 GSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPL 157 (406)
Q Consensus 123 g~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPL 157 (406)
| .-. ++...++. .+.||++.+.+.+.|-
T Consensus 142 G--ka~----AlN~gl~~-a~~d~iv~lDAD~~~~ 169 (444)
T PRK14583 142 G--KAI----ALRMGAAA-ARSEYLVCIDGDALLD 169 (444)
T ss_pred C--HHH----HHHHHHHh-CCCCEEEEECCCCCcC
Confidence 3 212 22223333 4689999999999874
No 8
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=86.52 E-value=28 Score=36.28 Aligned_cols=106 Identities=14% Similarity=0.180 Sum_probs=60.8
Q ss_pred CCCCceEEEEEecCCCHHHHHHHHHHHc---CCCCEE-EEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceee
Q 039162 45 HYPPAFAYYISGGTGDKDRIFRLLLALY---HPRNRY-LLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVN 120 (406)
Q Consensus 45 ~~p~kiAylIl~~~~d~~~l~rLl~aLy---~p~n~y-~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~ 120 (406)
++.|+++.+|-+ ++..+.+.++++++. .|...+ +|=+|-.++++-.+.+++.. ..++++.+..... +
T Consensus 46 ~~~P~vsVIIP~-yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~------~~~~~v~v~~~~~--~ 116 (439)
T TIGR03111 46 GKLPDITIIIPV-YNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ------NEFPGLSLRYMNS--D 116 (439)
T ss_pred CCCCCEEEEEEe-CCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH------HhCCCeEEEEeCC--C
Confidence 445789999998 888899999999884 344332 56667777665444333321 2356676642111 1
Q ss_pred cCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccC-hhHHHHHH
Q 039162 121 FVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVT-QDDLAHAF 167 (406)
Q Consensus 121 Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt-~~~i~~~f 167 (406)
+|.+ .| ++ .+++. .+-||++.+.+.+.|-.. ..++...|
T Consensus 117 -~Gka--~A-lN---~gl~~-s~g~~v~~~DaD~~~~~d~L~~l~~~f 156 (439)
T TIGR03111 117 -QGKA--KA-LN---AAIYN-SIGKYIIHIDSDGKLHKDAIKNMVTRF 156 (439)
T ss_pred -CCHH--HH-HH---HHHHH-ccCCEEEEECCCCCcChHHHHHHHHHH
Confidence 3422 11 22 22333 235789999999998332 23344444
No 9
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=85.41 E-value=10 Score=40.66 Aligned_cols=103 Identities=13% Similarity=0.042 Sum_probs=62.3
Q ss_pred CCCceEEEEEecCCCHHHHHHHHHH----HcCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeec
Q 039162 46 YPPAFAYYISGGTGDKDRIFRLLLA----LYHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNF 121 (406)
Q Consensus 46 ~p~kiAylIl~~~~d~~~l~rLl~a----Ly~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~W 121 (406)
+.|+++.+|-+ |++.+.+.++++. ++.|+-.++|=.|... ++-...+++ +...+||++++..+. -
T Consensus 64 ~~p~vaIlIPA-~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~nd-d~T~~~v~~------l~~~~p~v~~vv~~~---~ 132 (504)
T PRK14716 64 PEKRIAIFVPA-WREADVIGRMLEHNLATLDYENYRIFVGTYPND-PATLREVDR------LAARYPRVHLVIVPH---D 132 (504)
T ss_pred CCCceEEEEec-cCchhHHHHHHHHHHHcCCCCCeEEEEEECCCC-hhHHHHHHH------HHHHCCCeEEEEeCC---C
Confidence 36789999998 8888888887775 3346555656555433 332233333 223578887653211 2
Q ss_pred CcchHHHHHHHHHHHHHh----cCCCCcEEEEecCCCccccC
Q 039162 122 VGSSNVAAVLRAAAILLK----VDKGWNWFIALSALDYPLVT 159 (406)
Q Consensus 122 gg~S~V~AtL~~~~~lL~----~~~~wd~fi~LSg~DyPLkt 159 (406)
|+.+...|.-.+++.+.. .+.++|+++.+-+.|.|=..
T Consensus 133 gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd 174 (504)
T PRK14716 133 GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPL 174 (504)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCcc
Confidence 334566665555555432 23468999999998886543
No 10
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=85.37 E-value=11 Score=34.52 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=57.8
Q ss_pred ceEEEEEecCCCHHHHHHHHHHHc---CC-CCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcc
Q 039162 49 AFAYYISGGTGDKDRIFRLLLALY---HP-RNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGS 124 (406)
Q Consensus 49 kiAylIl~~~~d~~~l~rLl~aLy---~p-~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 124 (406)
|++.+|.+ +++.+.+.++|..+. .| .+.=+|=+|-.++++....++.+ ....++|+++..... |.
T Consensus 1 ~~sIiip~-~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~------~~~~~~v~~i~~~~~---~~- 69 (249)
T cd02525 1 FVSIIIPV-RNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEY------AAKDPRIRLIDNPKR---IQ- 69 (249)
T ss_pred CEEEEEEc-CCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHH------HhcCCeEEEEeCCCC---Cc-
Confidence 35667765 888999999998884 22 23234455665655444444432 223567888864421 21
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHH
Q 039162 125 SNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 125 S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f 167 (406)
-.|--.+++. .+.||++.|.+.|.+ +.+.|.+.+
T Consensus 70 --~~a~N~g~~~-----a~~d~v~~lD~D~~~--~~~~l~~~~ 103 (249)
T cd02525 70 --SAGLNIGIRN-----SRGDIIIRVDAHAVY--PKDYILELV 103 (249)
T ss_pred --hHHHHHHHHH-----hCCCEEEEECCCccC--CHHHHHHHH
Confidence 1232333332 257999999999986 555555444
No 11
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=82.39 E-value=29 Score=32.22 Aligned_cols=106 Identities=18% Similarity=0.113 Sum_probs=63.2
Q ss_pred CCCCCCCCceEEEEEecCCCHHHHHHHHHHHcC---CC--CEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCC
Q 039162 41 HHGAHYPPAFAYYISGGTGDKDRIFRLLLALYH---PR--NRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGK 115 (406)
Q Consensus 41 ~~~~~~p~kiAylIl~~~~d~~~l~rLl~aLy~---p~--n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~ 115 (406)
.++...+|+++.+|.+ +++.+.+.++|+.+.. |. ..++|..|...+ .-...++++. .. +|.++..
T Consensus 22 ~~~~~~~~~isVvip~-~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d-~t~~~~~~~~-------~~-~v~~i~~ 91 (251)
T cd06439 22 LPDPAYLPTVTIIIPA-YNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTD-GTAEIAREYA-------DK-GVKLLRF 91 (251)
T ss_pred CCCCCCCCEEEEEEec-CCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCc-cHHHHHHHHh-------hC-cEEEEEc
Confidence 4455667889999997 8888899999888742 33 356666665443 3333333211 11 6777643
Q ss_pred CceeecCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHHh
Q 039162 116 PDRVNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAFS 168 (406)
Q Consensus 116 r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~ 168 (406)
.. ..| ...|--.+++.+ .-||++++.+.+.|- .+.+.+.+.
T Consensus 92 ~~---~~g--~~~a~n~gi~~a-----~~d~i~~lD~D~~~~--~~~l~~l~~ 132 (251)
T cd06439 92 PE---RRG--KAAALNRALALA-----TGEIVVFTDANALLD--PDALRLLVR 132 (251)
T ss_pred CC---CCC--hHHHHHHHHHHc-----CCCEEEEEccccCcC--HHHHHHHHH
Confidence 22 122 344444444432 239999999999995 455554443
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=76.91 E-value=5.9 Score=36.27 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=54.2
Q ss_pred CceEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCChHHHHHHHHHhccccccccccc--eEEcCCCceeecC
Q 039162 48 PAFAYYISGGTGDKDRIFRLLLALYH---PRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGN--VDVVGKPDRVNFV 122 (406)
Q Consensus 48 ~kiAylIl~~~~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~N--V~vv~~r~~V~Wg 122 (406)
|+++.+|.+ ++..+.+.+.|.++-+ |+-.++| +|..++++..+.+++..+ .+++ |+++.... -.
T Consensus 1 P~v~Vvip~-~~~~~~l~~~l~sl~~~~~~~~~v~v-vd~~~~~~~~~~~~~~~~------~~~~~~v~vi~~~~---~~ 69 (228)
T PF13641_consen 1 PRVSVVIPA-YNEDDVLRRCLESLLAQDYPRLEVVV-VDDGSDDETAEILRALAA------RYPRVRVRVIRRPR---NP 69 (228)
T ss_dssp --EEEE--B-SS-HHHHHHHHHHHTTSHHHTEEEEE-EEE-SSS-GCTTHHHHHH------TTGG-GEEEEE-------H
T ss_pred CEEEEEEEe-cCCHHHHHHHHHHHHcCCCCCeEEEE-EECCCChHHHHHHHHHHH------HcCCCceEEeecCC---CC
Confidence 568899987 8888999999999864 5545555 554443332233333222 3443 46653221 11
Q ss_pred cc-hHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHHhcc-CCCCceEe
Q 039162 123 GS-SNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSV-RRDLNFID 178 (406)
Q Consensus 123 g~-S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~~-~~~~nFI~ 178 (406)
|. +...|.-++++. .+.||++.|.+.+.| ..+-|....... ..+..++.
T Consensus 70 g~~~k~~a~n~~~~~-----~~~d~i~~lD~D~~~--~p~~l~~~~~~~~~~~~~~v~ 120 (228)
T PF13641_consen 70 GPGGKARALNEALAA-----ARGDYILFLDDDTVL--DPDWLERLLAAFADPGVGAVG 120 (228)
T ss_dssp HHHHHHHHHHHHHHH--------SEEEEE-SSEEE---CHHHHHHHHHHHBSS--EEE
T ss_pred CcchHHHHHHHHHHh-----cCCCEEEEECCCcEE--CHHHHHHHHHHHHhCCCCeEe
Confidence 32 344444454443 347899999999888 444444333222 34566665
No 13
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=75.50 E-value=64 Score=32.42 Aligned_cols=112 Identities=12% Similarity=0.042 Sum_probs=59.6
Q ss_pred CCCCCceEEEEEecCCCHHHHHHHHHHHcC---------C-CCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEc
Q 039162 44 AHYPPAFAYYISGGTGDKDRIFRLLLALYH---------P-RNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVV 113 (406)
Q Consensus 44 ~~~p~kiAylIl~~~~d~~~l~rLl~aLy~---------p-~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv 113 (406)
.++++.+..+|-+ +++.+.+.++++.+.. + .+.=+|=||-.|++.-.+.++++.+... ..-.+++++
T Consensus 66 ~~~~~~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~--~~~~~i~vi 142 (333)
T PTZ00260 66 KDSDVDLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNI--NPNIDIRLL 142 (333)
T ss_pred CCCCeEEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcC--CCCCcEEEE
Confidence 4567789988888 8888888888887642 2 2334566777666554433443322110 001347777
Q ss_pred CCCceeecCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCc-cccChhHHHHHHh
Q 039162 114 GKPDRVNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDY-PLVTQDDLAHAFS 168 (406)
Q Consensus 114 ~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~Dy-PLkt~~~i~~~f~ 168 (406)
.... +-| .-.|.-.+++.+ .-||++++.+.+. +....+.+.+.+.
T Consensus 143 ~~~~--N~G---~~~A~~~Gi~~a-----~gd~I~~~DaD~~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 143 SLLR--NKG---KGGAVRIGMLAS-----RGKYILMVDADGATDIDDFDKLEDIML 188 (333)
T ss_pred EcCC--CCC---hHHHHHHHHHHc-----cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4322 122 222333333332 2378888877654 3334445555443
No 14
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=75.41 E-value=25 Score=32.05 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=71.4
Q ss_pred EEEecCCCHHHHHHHHHHH----cCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHH
Q 039162 53 YISGGTGDKDRIFRLLLAL----YHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVA 128 (406)
Q Consensus 53 lIl~~~~d~~~l~rLl~aL----y~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 128 (406)
+++++.|-..|+.+|++.+ ++++.++ |=-+.+.+...-.++.+......-....+..+-+.+. -.+.=++.+.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~i-vt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~--~~~~~~~~l~ 79 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYI-VTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQS--YLTSIFTTLR 79 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEE-EEcCCcccHHHHHHHHHhccccceeeccceEEEechh--hHhhHHHHHH
Confidence 4556677899999999999 6554333 3333333333222333321110001223444433322 1233468889
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHHhccCCCCceEecc
Q 039162 129 AVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHT 180 (406)
Q Consensus 129 AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~~~~~~nFI~~~ 180 (406)
+.+.++..+++..+| =-+-|=.|.++|+.=..-+.+.|.-.....-|||..
T Consensus 80 ~~~~~~~il~r~rPd-vii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 80 AFLQSLRILRRERPD-VIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HHHHHHHHHHHhCCC-EEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 999999999886433 123345678999998888887775444446777764
No 15
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=75.06 E-value=33 Score=30.09 Aligned_cols=93 Identities=14% Similarity=0.034 Sum_probs=48.3
Q ss_pred ecCCCHHHHHHHHHHHc------CCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHH
Q 039162 56 GGTGDKDRIFRLLLALY------HPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAA 129 (406)
Q Consensus 56 ~~~~d~~~l~rLl~aLy------~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 129 (406)
.+++..+.+.++++.|. .+.-.++| +|-.+++.....++.+. ...+||.++... .+.| ...|
T Consensus 4 p~~n~~~~l~~~l~sl~~~~~~~~~~~eiiv-vdd~s~d~t~~~~~~~~------~~~~~i~~i~~~--~n~G---~~~a 71 (181)
T cd04187 4 PVYNEEENLPELYERLKAVLESLGYDYEIIF-VDDGSTDRTLEILRELA------ARDPRVKVIRLS--RNFG---QQAA 71 (181)
T ss_pred eecCchhhHHHHHHHHHHHHHhcCCCeEEEE-EeCCCCccHHHHHHHHH------hhCCCEEEEEec--CCCC---cHHH
Confidence 34888888888877663 23334444 66666654433333321 235678877432 1223 2233
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHH
Q 039162 130 VLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 130 tL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f 167 (406)
.-.+++.+ .-||++.+.+.+. + +.+.+...+
T Consensus 72 ~n~g~~~a-----~~d~i~~~D~D~~-~-~~~~l~~l~ 102 (181)
T cd04187 72 LLAGLDHA-----RGDAVITMDADLQ-D-PPELIPEML 102 (181)
T ss_pred HHHHHHhc-----CCCEEEEEeCCCC-C-CHHHHHHHH
Confidence 33333332 2288888886544 4 344444444
No 16
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=74.91 E-value=1.1e+02 Score=34.41 Aligned_cols=126 Identities=12% Similarity=0.067 Sum_probs=63.8
Q ss_pred CCCCCCCceEEEEEecCCCHH----HHHHHHHHHc---CCCCEEEEEEcCCCChH----HHHHHHHHhccccccccccce
Q 039162 42 HGAHYPPAFAYYISGGTGDKD----RIFRLLLALY---HPRNRYLLHLAADASDD----ERLKLAAAVRSVPAVRAFGNV 110 (406)
Q Consensus 42 ~~~~~p~kiAylIl~~~~d~~----~l~rLl~aLy---~p~n~y~IHvD~ka~~~----~~~~l~~~v~~~~~~~~~~NV 110 (406)
++.+..+|.+.+|-++..|++ .++..++.+. .+++..++=+|..+++. +++.+++..+.. ...++|
T Consensus 118 ~~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~---~~~~~i 194 (691)
T PRK05454 118 PPPPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAEL---GGEGRI 194 (691)
T ss_pred CCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhc---CCCCcE
Confidence 344556899999998566654 4555555543 44444445555544433 122222211111 123577
Q ss_pred EEcCCCceeecCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccC-hhHHHHHHhccCCCCceEe
Q 039162 111 DVVGKPDRVNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVT-QDDLAHAFSSVRRDLNFID 178 (406)
Q Consensus 111 ~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt-~~~i~~~f~~~~~~~nFI~ 178 (406)
++...... .|.. .- +....+-+.+.++||++.|.+...|-.. ..++...|.. +.+.-.|.
T Consensus 195 ~yr~R~~n---~~~K-aG---Nl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~-dP~vGlVQ 255 (691)
T PRK05454 195 FYRRRRRN---VGRK-AG---NIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEA-NPRAGLIQ 255 (691)
T ss_pred EEEECCcC---CCcc-HH---HHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhh-CcCEEEEe
Confidence 77533222 2221 11 1112222334689999999998887643 3455555432 34455554
No 17
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=74.66 E-value=31 Score=31.77 Aligned_cols=103 Identities=22% Similarity=0.189 Sum_probs=55.9
Q ss_pred CceEEEEEecCCCHHHHHHHHHHHcC---CC-CEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCc
Q 039162 48 PAFAYYISGGTGDKDRIFRLLLALYH---PR-NRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVG 123 (406)
Q Consensus 48 ~kiAylIl~~~~d~~~l~rLl~aLy~---p~-n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg 123 (406)
|++..+|.+ |+..+.+.++|++|.. |. ..-+|=+|. +++.....+++..+..+ ....+|..+...... |
T Consensus 1 p~vSViIp~-yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~--~~~~~i~~~~~~~~~---G 73 (232)
T cd06437 1 PMVTVQLPV-FNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYA--AQGVNIKHVRRADRT---G 73 (232)
T ss_pred CceEEEEec-CCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHh--hcCCceEEEECCCCC---C
Confidence 357888887 9999999999999853 32 233455786 65554444444322110 112345544322222 2
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHH
Q 039162 124 SSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAH 165 (406)
Q Consensus 124 ~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~ 165 (406)
+ ...| + ...++. .+.+|++++-+.+++ ..+-|.+
T Consensus 74 ~-k~~a-~---n~g~~~-a~~~~i~~~DaD~~~--~~~~l~~ 107 (232)
T cd06437 74 Y-KAGA-L---AEGMKV-AKGEYVAIFDADFVP--PPDFLQK 107 (232)
T ss_pred C-chHH-H---HHHHHh-CCCCEEEEEcCCCCC--ChHHHHH
Confidence 2 1111 1 122232 357999999998887 3444444
No 18
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=74.38 E-value=42 Score=31.18 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=56.5
Q ss_pred eEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHH
Q 039162 50 FAYYISGGTGDKDRIFRLLLALYHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAA 129 (406)
Q Consensus 50 iAylIl~~~~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 129 (406)
+..+|.+ +++.+.+.+.|.+|..--.. +|=||..|++.-. ++.+ ..++.++.. .|+|++.-
T Consensus 2 isvii~~-~Ne~~~l~~~l~sl~~~~~e-iivvD~gStD~t~-~i~~----------~~~~~v~~~----~~~g~~~~-- 62 (229)
T cd02511 2 LSVVIIT-KNEERNIERCLESVKWAVDE-IIVVDSGSTDRTV-EIAK----------EYGAKVYQR----WWDGFGAQ-- 62 (229)
T ss_pred EEEEEEe-CCcHHHHHHHHHHHhcccCE-EEEEeCCCCccHH-HHHH----------HcCCEEEEC----CCCChHHH--
Confidence 6777877 88899999999999743134 4557877765533 3332 235666542 56676432
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCCccccC-hhHHHHHH
Q 039162 130 VLRAAAILLKVDKGWNWFIALSALDYPLVT-QDDLAHAF 167 (406)
Q Consensus 130 tL~~~~~lL~~~~~wd~fi~LSg~DyPLkt-~~~i~~~f 167 (406)
.+ .+++. ..-||++.|.+.+.+-.. .+++.+.+
T Consensus 63 -~n---~~~~~-a~~d~vl~lDaD~~~~~~~~~~l~~~~ 96 (229)
T cd02511 63 -RN---FALEL-ATNDWVLSLDADERLTPELADEILALL 96 (229)
T ss_pred -HH---HHHHh-CCCCEEEEEeCCcCcCHHHHHHHHHHH
Confidence 22 12222 234699999999986443 33444444
No 19
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=71.24 E-value=42 Score=33.49 Aligned_cols=94 Identities=11% Similarity=0.180 Sum_probs=52.6
Q ss_pred CCceEEEEEecCCC--HHHHHHHHHHH-----------cCCCCEEEEEEc--CC-CChHHHHHHHHHhccccccc---cc
Q 039162 47 PPAFAYYISGGTGD--KDRIFRLLLAL-----------YHPRNRYLLHLA--AD-ASDDERLKLAAAVRSVPAVR---AF 107 (406)
Q Consensus 47 p~kiAylIl~~~~d--~~~l~rLl~aL-----------y~p~n~y~IHvD--~k-a~~~~~~~l~~~v~~~~~~~---~~ 107 (406)
...+|||+.|..+- -.....+.+++ .||.|.++ +| .+ .+.+ ++++..+..+... .-
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~--~d~~g~~i~vd---~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIIL--FDIFDKDLSKS---EFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEE--eccCCCcCCHH---HHHHHHHHhccCCcccCC
Confidence 36699999884443 24455666666 25655444 47 33 2333 3333333332222 23
Q ss_pred cceEEcCCCceeecCcchHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 039162 108 GNVDVVGKPDRVNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSA 152 (406)
Q Consensus 108 ~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg 152 (406)
..|.++.+. -.|-.+..+++-..|+..++.-+||+++.
T Consensus 91 ~KvvII~~~-------e~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 91 KKILIIKNI-------EKTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred ceEEEEecc-------cccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 456666543 33334444555556778889999999886
No 20
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=71.05 E-value=1.1e+02 Score=34.30 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=59.1
Q ss_pred CCCCceEEEEEecCCC-HHHHHHHHHHH---cCCC-CEEEEEEcCCCChH--------------HHHHHHHHhccccccc
Q 039162 45 HYPPAFAYYISGGTGD-KDRIFRLLLAL---YHPR-NRYLLHLAADASDD--------------ERLKLAAAVRSVPAVR 105 (406)
Q Consensus 45 ~~p~kiAylIl~~~~d-~~~l~rLl~aL---y~p~-n~y~IHvD~ka~~~--------------~~~~l~~~v~~~~~~~ 105 (406)
+..|+++.+|-+ |++ .+.++++++++ +.|. +.=++=+|..+++. .+.++++..+
T Consensus 128 ~~~P~VsViIP~-yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~------ 200 (713)
T TIGR03030 128 EEWPTVDVFIPT-YNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR------ 200 (713)
T ss_pred ccCCeeEEEEcC-CCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH------
Confidence 445689999987 655 45556667664 4463 32234445544321 1334443222
Q ss_pred cccceEEcCCCceeecCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccCh-hHHHHHHhccCCCCceE
Q 039162 106 AFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQ-DDLAHAFSSVRRDLNFI 177 (406)
Q Consensus 106 ~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~-~~i~~~f~~~~~~~nFI 177 (406)
. .+|.++.... +.++-. .++..+++. .+-||++.+.+.+.|-... .++..+|.. +.+..++
T Consensus 201 ~-~~v~yi~r~~--n~~~KA------gnLN~al~~-a~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~V 262 (713)
T TIGR03030 201 K-LGVNYITRPR--NVHAKA------GNINNALKH-TDGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLV 262 (713)
T ss_pred H-cCcEEEECCC--CCCCCh------HHHHHHHHh-cCCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEE
Confidence 2 2577664322 233211 112223343 3459999999999996432 344445533 3344454
No 21
>PRK10063 putative glycosyl transferase; Provisional
Probab=70.75 E-value=84 Score=29.99 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=60.1
Q ss_pred CceEEEEEecCCCHHHHHHHHHHHcC-----CCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecC
Q 039162 48 PAFAYYISGGTGDKDRIFRLLLALYH-----PRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFV 122 (406)
Q Consensus 48 ~kiAylIl~~~~d~~~l~rLl~aLy~-----p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wg 122 (406)
|++..+|.+ ++..+.+.+.++.+.. ..+.=+|=+|..|++.-.+-++++. ...++.++..++ .
T Consensus 1 ~~vSVIi~~-yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~-------~~~~i~~i~~~~----~ 68 (248)
T PRK10063 1 MLLSVITVA-FRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLN-------GIFNLRFVSEPD----N 68 (248)
T ss_pred CeEEEEEEe-CCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhc-------ccCCEEEEECCC----C
Confidence 567788876 8889999999888841 2344578888877766444344321 112477664332 2
Q ss_pred cchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHH
Q 039162 123 GSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 123 g~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f 167 (406)
|.. .|--.+++.+ .-+|++.|.+.|...-...++...+
T Consensus 69 G~~--~A~N~Gi~~a-----~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 69 GIY--DAMNKGIAMA-----QGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred CHH--HHHHHHHHHc-----CCCEEEEEeCCcccCcCHHHHHHHH
Confidence 322 2322334332 3489999999999876443333333
No 22
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=70.55 E-value=70 Score=28.70 Aligned_cols=103 Identities=11% Similarity=0.109 Sum_probs=55.2
Q ss_pred CceEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCChHHHHHHHHHhcccccccccc--ceEEcCCCceeecC
Q 039162 48 PAFAYYISGGTGDKDRIFRLLLALY---HPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFG--NVDVVGKPDRVNFV 122 (406)
Q Consensus 48 ~kiAylIl~~~~d~~~l~rLl~aLy---~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~--NV~vv~~r~~V~Wg 122 (406)
|++..+|-+ ++..+.+.++|++|. +|...+ |=||-.+++...+.++++.+ .++ ++.++.....+ |
T Consensus 1 p~vsviip~-~n~~~~l~~~L~sl~~q~~~~~ei-ivVdd~s~d~t~~~~~~~~~------~~~~~~~~~~~~~~~~--g 70 (196)
T cd02520 1 PGVSILKPL-CGVDPNLYENLESFFQQDYPKYEI-LFCVQDEDDPAIPVVRKLIA------KYPNVDARLLIGGEKV--G 70 (196)
T ss_pred CCeEEEEec-CCCCccHHHHHHHHHhccCCCeEE-EEEeCCCcchHHHHHHHHHH------HCCCCcEEEEecCCcC--C
Confidence 357788887 777778888888885 344344 44565555544444444322 233 34444322222 2
Q ss_pred cchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHH
Q 039162 123 GSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 123 g~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f 167 (406)
+.....+ +..+++. ...||++++.+.+.+ +.+.|.+.+
T Consensus 71 ~~~~~~~----~n~g~~~-a~~d~i~~~D~D~~~--~~~~l~~l~ 108 (196)
T cd02520 71 INPKVNN----LIKGYEE-ARYDILVISDSDISV--PPDYLRRMV 108 (196)
T ss_pred CCHhHHH----HHHHHHh-CCCCEEEEECCCceE--ChhHHHHHH
Confidence 2222222 2223333 356899998887764 556665443
No 23
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=70.41 E-value=24 Score=29.56 Aligned_cols=99 Identities=16% Similarity=0.174 Sum_probs=58.4
Q ss_pred EEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHH
Q 039162 53 YISGGTGDKDRIFRLLLALY---HPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAA 129 (406)
Q Consensus 53 lIl~~~~d~~~l~rLl~aLy---~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 129 (406)
+|. +++..+.|.++|.+|- ++...++| +|-.+++.....++++.+ ...++.++..... ...-.+
T Consensus 3 vip-~~n~~~~l~~~l~sl~~q~~~~~eiiv-vdd~s~d~~~~~~~~~~~------~~~~i~~i~~~~n-----~g~~~~ 69 (169)
T PF00535_consen 3 VIP-TYNEAEYLERTLESLLKQTDPDFEIIV-VDDGSTDETEEILEEYAE------SDPNIRYIRNPEN-----LGFSAA 69 (169)
T ss_dssp EEE-ESS-TTTHHHHHHHHHHHSGCEEEEEE-EECS-SSSHHHHHHHHHC------CSTTEEEEEHCCC-----SHHHHH
T ss_pred EEE-eeCCHHHHHHHHHHHhhccCCCEEEEE-eccccccccccccccccc------ccccccccccccc-----cccccc
Confidence 344 4888888888888775 34455555 555555555555655432 2467888754321 134444
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCCccccC-hhHHHHHHhc
Q 039162 130 VLRAAAILLKVDKGWNWFIALSALDYPLVT-QDDLAHAFSS 169 (406)
Q Consensus 130 tL~~~~~lL~~~~~wd~fi~LSg~DyPLkt-~~~i~~~f~~ 169 (406)
.-.+++.+ .-+|+..+.+.|++... .+++.+.+..
T Consensus 70 ~n~~~~~a-----~~~~i~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 70 RNRGIKHA-----KGEYILFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp HHHHHHH-------SSEEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred cccccccc-----ceeEEEEeCCCceEcHHHHHHHHHHHHh
Confidence 44544443 23499999999999887 7777777754
No 24
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=70.36 E-value=34 Score=33.58 Aligned_cols=89 Identities=19% Similarity=0.294 Sum_probs=57.3
Q ss_pred CceEEEEEecCCCHHHHHHHHHHHcCCCC--EEEEEEcCCCChHHHHHHHHHhcccccccc-ccceEEcCCCceeecCcc
Q 039162 48 PAFAYYISGGTGDKDRIFRLLLALYHPRN--RYLLHLAADASDDERLKLAAAVRSVPAVRA-FGNVDVVGKPDRVNFVGS 124 (406)
Q Consensus 48 ~kiAylIl~~~~d~~~l~rLl~aLy~p~n--~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~-~~NV~vv~~r~~V~Wgg~ 124 (406)
|+++-+|. +++..+.+...+..|..... .++|=+|-.+++.....+++ . +++|.++......-|+|-
T Consensus 3 ~~i~~iiv-~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~---------~~~~~v~~i~~~~NlG~agg 72 (305)
T COG1216 3 PKISIIIV-TYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKA---------RFFPNVRLIENGENLGFAGG 72 (305)
T ss_pred cceEEEEE-ecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHh---------hcCCcEEEEEcCCCccchhh
Confidence 45555555 59999999999988863332 23334687777766655543 2 689999987666666554
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEecCCC
Q 039162 125 SNVAAVLRAAAILLKVDKGWNWFIALSALD 154 (406)
Q Consensus 125 S~V~AtL~~~~~lL~~~~~wd~fi~LSg~D 154 (406)
-. .+++.++..+. + ++++-..|
T Consensus 73 ~n-----~g~~~a~~~~~--~-~~l~LN~D 94 (305)
T COG1216 73 FN-----RGIKYALAKGD--D-YVLLLNPD 94 (305)
T ss_pred hh-----HHHHHHhcCCC--c-EEEEEcCC
Confidence 33 56777777532 2 45555566
No 25
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=69.07 E-value=42 Score=29.23 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=56.8
Q ss_pred cCCCHHHHHHHHHHHcCC----CCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHH
Q 039162 57 GTGDKDRIFRLLLALYHP----RNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLR 132 (406)
Q Consensus 57 ~~~d~~~l~rLl~aLy~p----~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~ 132 (406)
++++.+.+.++|+.+..- .+.=+|=+|..+++.....++.+.. ..+.+.++..... .+...|.-.
T Consensus 5 ~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~------~~~~~~~~~~~~n-----~G~~~a~n~ 73 (185)
T cd04179 5 AYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAA------RVPRVRVIRLSRN-----FGKGAAVRA 73 (185)
T ss_pred ccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHH------hCCCeEEEEccCC-----CCccHHHHH
Confidence 488888888888887532 2344566666665554554544322 2344444422211 123344444
Q ss_pred HHHHHHhcCCCCcEEEEecCCCccccChhHHHHHHhc-cCCCCceEe
Q 039162 133 AAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSS-VRRDLNFID 178 (406)
Q Consensus 133 ~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~-~~~~~nFI~ 178 (406)
+++.+ .. ||++.|.+.|.+ +.+.+...+.. ...+..++-
T Consensus 74 g~~~a----~g-d~i~~lD~D~~~--~~~~l~~l~~~~~~~~~~~v~ 113 (185)
T cd04179 74 GFKAA----RG-DIVVTMDADLQH--PPEDIPKLLEKLLEGGADVVI 113 (185)
T ss_pred HHHHh----cC-CEEEEEeCCCCC--CHHHHHHHHHHHhccCCcEEE
Confidence 44443 22 899999999875 55556555543 234455553
No 26
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=67.57 E-value=54 Score=29.07 Aligned_cols=104 Identities=13% Similarity=0.012 Sum_probs=55.1
Q ss_pred CceEEEEEecCCCH-HHHHHHHHHHcCC--CCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcc
Q 039162 48 PAFAYYISGGTGDK-DRIFRLLLALYHP--RNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGS 124 (406)
Q Consensus 48 ~kiAylIl~~~~d~-~~l~rLl~aLy~p--~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 124 (406)
|++..+|.+ ++.. +.+.++|++|..- .+.-+|=+|..+++..-.++.+.. ....+++.++.... -.
T Consensus 1 p~vsiii~~-~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~-----~~~~~~~~~~~~~~---~~-- 69 (202)
T cd04184 1 PLISIVMPV-YNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKY-----AAQDPRIKVVFREE---NG-- 69 (202)
T ss_pred CeEEEEEec-ccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHH-----HhcCCCEEEEEccc---CC--
Confidence 357788887 7777 9999999998531 122345556555443222222211 11235666653221 12
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccC-hhHHHHHH
Q 039162 125 SNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVT-QDDLAHAF 167 (406)
Q Consensus 125 S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt-~~~i~~~f 167 (406)
....|--.+++.+ .-||+..+.+.|.+-.. .+.+.+.+
T Consensus 70 g~~~a~n~g~~~a-----~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 70 GISAATNSALELA-----TGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred CHHHHHHHHHHhh-----cCCEEEEECCCCcCChHHHHHHHHHH
Confidence 2333434444432 34899999888877332 23444444
No 27
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=66.76 E-value=91 Score=28.24 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=53.5
Q ss_pred CceEEEEEecCCC-HHHHHHHHHHHcC---CC--CEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeec
Q 039162 48 PAFAYYISGGTGD-KDRIFRLLLALYH---PR--NRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNF 121 (406)
Q Consensus 48 ~kiAylIl~~~~d-~~~l~rLl~aLy~---p~--n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~W 121 (406)
|++..+|-+ +++ .+.+.+.|+++-. |+ -.++| +|-.+++.-..-++++. ... ++.++... ..+
T Consensus 1 p~vsviip~-~n~~~~~l~~~l~sl~~q~~~~~~~eiiv-vdd~s~d~t~~~~~~~~------~~~-~~~~~~~~--~~~ 69 (234)
T cd06421 1 PTVDVFIPT-YNEPLEIVRKTLRAALAIDYPHDKLRVYV-LDDGRRPELRALAAELG------VEY-GYRYLTRP--DNR 69 (234)
T ss_pred CceEEEEec-CCCcHHHHHHHHHHHHhcCCCcccEEEEE-EcCCCchhHHHHHHHhh------ccc-CceEEEeC--CCC
Confidence 357777877 664 5778888888742 33 13444 67666554433333211 111 34444321 334
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHHh
Q 039162 122 VGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAFS 168 (406)
Q Consensus 122 gg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~ 168 (406)
|+..- +.-.+ ++. .+.||++.+.+.|++ +.+.|.+...
T Consensus 70 ~~~~~--~~n~~----~~~-a~~d~i~~lD~D~~~--~~~~l~~l~~ 107 (234)
T cd06421 70 HAKAG--NLNNA----LAH-TTGDFVAILDADHVP--TPDFLRRTLG 107 (234)
T ss_pred CCcHH--HHHHH----HHh-CCCCEEEEEccccCc--CccHHHHHHH
Confidence 43221 11222 222 257999999999998 3455555443
No 28
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=66.41 E-value=38 Score=32.45 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHHHHHHH
Q 039162 59 GDKDRIFRLLLALYHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILL 138 (406)
Q Consensus 59 ~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL 138 (406)
.+.+.|++++++|.. ++.-+|=||-.++.. ..++. +....++|+++.... +-|.. .|-=.+++.++
T Consensus 5 ~~~~~l~~~l~sl~~-q~~~iiVVDN~S~~~--~~~~~------~~~~~~~i~~i~~~~--N~G~a---~a~N~Gi~~a~ 70 (281)
T TIGR01556 5 PDLEHLGELITSLPK-QVDRIIAVDNSPHSD--QPLKN------ARLRGQKIALIHLGD--NQGIA---GAQNQGLDASF 70 (281)
T ss_pred ccHHHHHHHHHHHHh-cCCEEEEEECcCCCc--HhHHH------HhccCCCeEEEECCC--CcchH---HHHHHHHHHHH
Confidence 357899999999985 456678889876433 22222 122457898885432 12222 23334555665
Q ss_pred hcCCCCcEEEEecCCCccc
Q 039162 139 KVDKGWNWFIALSALDYPL 157 (406)
Q Consensus 139 ~~~~~wd~fi~LSg~DyPL 157 (406)
+ .+.||+++|-..+.|-
T Consensus 71 ~--~~~d~i~~lD~D~~~~ 87 (281)
T TIGR01556 71 R--RGVQGVLLLDQDSRPG 87 (281)
T ss_pred H--CCCCEEEEECCCCCCC
Confidence 5 3689999999999996
No 29
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.97 E-value=66 Score=27.05 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=48.8
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHH
Q 039162 53 YISGGTGDKDRIFRLLLALYH---PRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAA 129 (406)
Q Consensus 53 lIl~~~~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 129 (406)
+|.+ ++..+.+.++++.|.. +...++| +|-.+.+.....+.+ ..+++.++.... +. +...|
T Consensus 2 ii~~-~~~~~~l~~~l~sl~~~~~~~~~iii-vdd~s~~~~~~~~~~---------~~~~~~~~~~~~--~~---g~~~a 65 (166)
T cd04186 2 IIVN-YNSLEYLKACLDSLLAQTYPDFEVIV-VDNASTDGSVELLRE---------LFPEVRLIRNGE--NL---GFGAG 65 (166)
T ss_pred EEEe-cCCHHHHHHHHHHHHhccCCCeEEEE-EECCCCchHHHHHHH---------hCCCeEEEecCC--Cc---ChHHH
Confidence 4554 7889999999999963 3345555 555555554444443 123566654321 12 22333
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCCccc
Q 039162 130 VLRAAAILLKVDKGWNWFIALSALDYPL 157 (406)
Q Consensus 130 tL~~~~~lL~~~~~wd~fi~LSg~DyPL 157 (406)
--.+++.+ +.+|++.+.+.+++-
T Consensus 66 ~n~~~~~~-----~~~~i~~~D~D~~~~ 88 (166)
T cd04186 66 NNQGIREA-----KGDYVLLLNPDTVVE 88 (166)
T ss_pred hhHHHhhC-----CCCEEEEECCCcEEC
Confidence 33433332 579999999888874
No 30
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=65.56 E-value=5.8 Score=27.83 Aligned_cols=27 Identities=26% Similarity=0.588 Sum_probs=23.2
Q ss_pred cCCCHHHHHHHHHHHcCCCCEEEEEEcC
Q 039162 57 GTGDKDRIFRLLLALYHPRNRYLLHLAA 84 (406)
Q Consensus 57 ~~~d~~~l~rLl~aLy~p~n~y~IHvD~ 84 (406)
+|.|.++|..+++.+ .|++.++||=|.
T Consensus 16 gHad~~~L~~~i~~~-~p~~vilVHGe~ 42 (43)
T PF07521_consen 16 GHADREELLEFIEQL-NPRKVILVHGEP 42 (43)
T ss_dssp SS-BHHHHHHHHHHH-CSSEEEEESSEH
T ss_pred CCCCHHHHHHHHHhc-CCCEEEEecCCC
Confidence 499999999999999 799999999653
No 31
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=62.83 E-value=87 Score=28.49 Aligned_cols=91 Identities=10% Similarity=0.036 Sum_probs=53.9
Q ss_pred eEEEEEecCCCH-HHHHHHHHHHcCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHH
Q 039162 50 FAYYISGGTGDK-DRIFRLLLALYHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVA 128 (406)
Q Consensus 50 iAylIl~~~~d~-~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 128 (406)
+..+|.+ ++.. +.+.++|+++......=+|=||-.+++.....+.. ....+.+.++.. .++|. ..
T Consensus 2 isVvIp~-~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~-------~~~~~~~~v~~~----~~~g~--~~ 67 (235)
T cd06434 2 VTVIIPV-YDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQ-------TVKYGGIFVITV----PHPGK--RR 67 (235)
T ss_pred eEEEEee-cCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHh-------hccCCcEEEEec----CCCCh--HH
Confidence 4567776 7777 99999999997632223344555555544333321 123455666543 23443 33
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCCccccC
Q 039162 129 AVLRAAAILLKVDKGWNWFIALSALDYPLVT 159 (406)
Q Consensus 129 AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt 159 (406)
|.-.+++. .+.||++.|.+.+.|-..
T Consensus 68 a~n~g~~~-----a~~d~v~~lD~D~~~~~~ 93 (235)
T cd06434 68 ALAEGIRH-----VTTDIVVLLDSDTVWPPN 93 (235)
T ss_pred HHHHHHHH-----hCCCEEEEECCCceeChh
Confidence 33334433 257999999999998755
No 32
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=60.73 E-value=54 Score=32.66 Aligned_cols=58 Identities=9% Similarity=-0.006 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 039162 88 DDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSAL 153 (406)
Q Consensus 88 ~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~ 153 (406)
.++-.++.+.+...|..+ .-.|.|+...+ .|-.+.-+++-..|+..++.-+||+++.+
T Consensus 86 idqIR~l~~~~~~~p~~~-~~kV~II~~ad-------~m~~~AaNaLLKtLEEPp~~t~~iL~t~~ 143 (290)
T PRK07276 86 TDTIRELVKNFSQSGYEG-KQQVFIIKDAD-------KMHVNAANSLLKVIEEPQSEIYIFLLTND 143 (290)
T ss_pred HHHHHHHHHHHhhCcccC-CcEEEEeehhh-------hcCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 344444444443333322 22455554433 33333444444456666666777777754
No 33
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=60.33 E-value=1.5e+02 Score=27.68 Aligned_cols=104 Identities=7% Similarity=0.094 Sum_probs=56.8
Q ss_pred CCCCceEEEEEecCCCHHHHHHHHHHH----cCCCCEEEEEEcCCCChHHHHHHHHHhccccccccc--cceEEcCCCce
Q 039162 45 HYPPAFAYYISGGTGDKDRIFRLLLAL----YHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAF--GNVDVVGKPDR 118 (406)
Q Consensus 45 ~~p~kiAylIl~~~~d~~~l~rLl~aL----y~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~--~NV~vv~~r~~ 118 (406)
+..|++..+|-+ ++..+.+..++..+ ....+.=+|-+|-.|++.-..-++++.+ .+ .+|.++....
T Consensus 6 ~~~~~vsVvIp~-yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~------~~~~~~v~~~~~~~- 77 (243)
T PLN02726 6 EGAMKYSIIVPT-YNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQK------VYGEDRILLRPRPG- 77 (243)
T ss_pred CCCceEEEEEcc-CCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHH------hcCCCcEEEEecCC-
Confidence 334678888887 88888777766655 2332344677777776654433333211 22 3555553211
Q ss_pred eecCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHH
Q 039162 119 VNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 119 V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f 167 (406)
-.|.+ .|--.+++. ..-+|++.+.+.+.+ +.+.|...+
T Consensus 78 --n~G~~--~a~n~g~~~-----a~g~~i~~lD~D~~~--~~~~l~~l~ 115 (243)
T PLN02726 78 --KLGLG--TAYIHGLKH-----ASGDFVVIMDADLSH--HPKYLPSFI 115 (243)
T ss_pred --CCCHH--HHHHHHHHH-----cCCCEEEEEcCCCCC--CHHHHHHHH
Confidence 12322 233333332 234899999998874 555554444
No 34
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=59.66 E-value=66 Score=36.23 Aligned_cols=121 Identities=12% Similarity=0.038 Sum_probs=66.4
Q ss_pred CCCCceEEEEEecCCCHHHHHHHHHH----HcCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceee
Q 039162 45 HYPPAFAYYISGGTGDKDRIFRLLLA----LYHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVN 120 (406)
Q Consensus 45 ~~p~kiAylIl~~~~d~~~l~rLl~a----Ly~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~ 120 (406)
+.+++++.+|=+ |++...+.+++.+ ++.|+-.+++=.|... +.-...+++ +...+|+++++.....
T Consensus 60 ~~~~~vsIlVPa-~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD-~~T~~~~~~------l~~~~p~~~~v~~~~~-- 129 (727)
T PRK11234 60 PDEKPLAIMVPA-WNETGVIGNMAELAATTLDYENYHIFVGTYPND-PATQADVDA------VCARFPNVHKVVCARP-- 129 (727)
T ss_pred CCCCCEEEEEec-CcchhhHHHHHHHHHHhCCCCCeEEEEEecCCC-hhHHHHHHH------HHHHCCCcEEEEeCCC--
Confidence 344679999988 8888777777664 5778866666665332 221222332 2335788875432211
Q ss_pred cCcchHHHHHHHHHHHHHhc----CCCCcEEEEecCCCccccChhHHHHHHhccCCCCceEec
Q 039162 121 FVGSSNVAAVLRAAAILLKV----DKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDH 179 (406)
Q Consensus 121 Wgg~S~V~AtL~~~~~lL~~----~~~wd~fi~LSg~DyPLkt~~~i~~~f~~~~~~~nFI~~ 179 (406)
|.-+-..|--.+++.+.+. +.+++.++.+-+.|.|=...=.+...+. .+..++..
T Consensus 130 -g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~~~~~l~---~~~~~VQ~ 188 (727)
T PRK11234 130 -GPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELRLFNYLV---ERKDLIQI 188 (727)
T ss_pred -CCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHHHHHhhc---CCCCeEee
Confidence 1224555544555544332 2467888888888876443333333332 23356654
No 35
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=59.51 E-value=1.1e+02 Score=28.27 Aligned_cols=104 Identities=17% Similarity=0.132 Sum_probs=55.0
Q ss_pred CceEEEEEecCCCHHHHHHHHHHHcC---CC-CEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCc
Q 039162 48 PAFAYYISGGTGDKDRIFRLLLALYH---PR-NRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVG 123 (406)
Q Consensus 48 ~kiAylIl~~~~d~~~l~rLl~aLy~---p~-n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg 123 (406)
|++..+|-+ ++..+.+.++|+.+.. |. +.=+|-||..+++.-...++++.. ....+|.++.. ....|
T Consensus 1 p~vsIiIp~-~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~-----~~~~~i~~~~~---~~~~G 71 (241)
T cd06427 1 PVYTILVPL-YKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL-----PSIFRVVVVPP---SQPRT 71 (241)
T ss_pred CeEEEEEec-CCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc-----CCCeeEEEecC---CCCCc
Confidence 457888887 8888999999999853 32 222455666665554443333110 01123433322 12233
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccCh-hHHHHHH
Q 039162 124 SSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQ-DDLAHAF 167 (406)
Q Consensus 124 ~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~-~~i~~~f 167 (406)
.+ .|--. .++. ..-||++.+.+.|.+-... .++...|
T Consensus 72 ~~--~a~n~----g~~~-a~gd~i~~~DaD~~~~~~~l~~~~~~~ 109 (241)
T cd06427 72 KP--KACNY----ALAF-ARGEYVVIYDAEDAPDPDQLKKAVAAF 109 (241)
T ss_pred hH--HHHHH----HHHh-cCCCEEEEEcCCCCCChHHHHHHHHHH
Confidence 33 22222 3333 3459999999998855332 2444444
No 36
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=58.19 E-value=1.1e+02 Score=30.19 Aligned_cols=99 Identities=9% Similarity=0.109 Sum_probs=51.6
Q ss_pred CCCceEEEEEecCCCH--HHHHHHH-HHH--------cCCCCEEEEEEcC------C-CChHHHHHHHHHhccccccccc
Q 039162 46 YPPAFAYYISGGTGDK--DRIFRLL-LAL--------YHPRNRYLLHLAA------D-ASDDERLKLAAAVRSVPAVRAF 107 (406)
Q Consensus 46 ~p~kiAylIl~~~~d~--~~l~rLl-~aL--------y~p~n~y~IHvD~------k-a~~~~~~~l~~~v~~~~~~~~~ 107 (406)
..+.+|||+.|...+. ..+..++ +.+ .||+ .++|--+. + -+.++-.++.+++...|..+ .
T Consensus 12 ~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD-~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g-~ 89 (263)
T PRK06581 12 NKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPD-YHFIARETSATSNAKNISIEQIRKLQDFLSKTSAIS-G 89 (263)
T ss_pred CcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCC-EEEEeccccccccCCcccHHHHHHHHHHHhhCcccC-C
Confidence 3467999999722211 1222222 222 5787 33343232 1 14445555665554433221 2
Q ss_pred cceEEcCCCceeecCcchHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 039162 108 GNVDVVGKPDRVNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSAL 153 (406)
Q Consensus 108 ~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~ 153 (406)
-.|.++ ++.-.|-.+.-+++=-.|++.+..-+|++++.+
T Consensus 90 ~KViII-------~~ae~mt~~AANALLKtLEEPP~~t~fILit~~ 128 (263)
T PRK06581 90 YKVAII-------YSAELMNLNAANSCLKILEDAPKNSYIFLITSR 128 (263)
T ss_pred cEEEEE-------echHHhCHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 234444 444455554555555567788888999999866
No 37
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=57.23 E-value=1.2e+02 Score=25.70 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHc--CCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEc
Q 039162 61 KDRIFRLLLALY--HPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVV 113 (406)
Q Consensus 61 ~~~l~rLl~aLy--~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv 113 (406)
.+++...++++. +|+..++|..|++++-+...++...++.. .+.+|.++
T Consensus 69 ~~~L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~a----G~~~v~l~ 119 (122)
T TIGR02803 69 RETLGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQA----GYLKIGLV 119 (122)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHc----CCCEEEEE
Confidence 466666676654 68888999999999877665555444332 24456554
No 38
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=57.04 E-value=68 Score=28.83 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=52.1
Q ss_pred EEEecCCCHHHHHHHHHHHc---CCC--CEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHH
Q 039162 53 YISGGTGDKDRIFRLLLALY---HPR--NRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNV 127 (406)
Q Consensus 53 lIl~~~~d~~~l~rLl~aLy---~p~--n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V 127 (406)
+|. ++++.+.+.++|++|. +|. ..++|--| .+++...+.++ +... ...++|.++.... ...+|. .
T Consensus 2 iip-~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd-~s~d~t~~~~~-~~~~----~~~~~v~~~~~~~-~~~~g~--~ 71 (229)
T cd04192 2 VIA-ARNEAENLPRLLQSLSALDYPKEKFEVILVDD-HSTDGTVQILE-FAAA----KPNFQLKILNNSR-VSISGK--K 71 (229)
T ss_pred EEE-ecCcHHHHHHHHHHHHhCCCCCCceEEEEEcC-CCCcChHHHHH-HHHh----CCCcceEEeeccC-cccchh--H
Confidence 344 4888999999999984 343 35555444 44443333232 1111 1245677664322 112222 2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHH
Q 039162 128 AAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 128 ~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f 167 (406)
.|--. .++. ..-||++++.+.+.+ ..+.|.+.+
T Consensus 72 ~a~n~----g~~~-~~~d~i~~~D~D~~~--~~~~l~~l~ 104 (229)
T cd04192 72 NALTT----AIKA-AKGDWIVTTDADCVV--PSNWLLTFV 104 (229)
T ss_pred HHHHH----HHHH-hcCCEEEEECCCccc--CHHHHHHHH
Confidence 22222 2232 346999999999977 345555544
No 39
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=54.51 E-value=1e+02 Score=28.13 Aligned_cols=94 Identities=12% Similarity=0.129 Sum_probs=56.8
Q ss_pred EEEecCCCH-HHHHHHHHHHcCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHH
Q 039162 53 YISGGTGDK-DRIFRLLLALYHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVL 131 (406)
Q Consensus 53 lIl~~~~d~-~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL 131 (406)
+|.. ++.. +.+.++|+.+... +.-+|=+|..+++... ...++ ..+++.++.... +.| ...|--
T Consensus 2 vI~~-yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~-~~~~~--------~~~~i~~i~~~~--n~G---~~~a~N 65 (237)
T cd02526 2 VVVT-YNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIE-LRLRL--------NSEKIELIHLGE--NLG---IAKALN 65 (237)
T ss_pred EEEE-ecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHH-HHhhc--------cCCcEEEEECCC--cee---hHHhhh
Confidence 3444 6666 9999999999865 4455668876654432 22211 246777774322 222 223333
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCccccChhHHHHH
Q 039162 132 RAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHA 166 (406)
Q Consensus 132 ~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~ 166 (406)
.+++.+.. .+.||++++.+.+++ +.+.|.+.
T Consensus 66 ~g~~~a~~--~~~d~v~~lD~D~~~--~~~~l~~l 96 (237)
T cd02526 66 IGIKAALE--NGADYVLLFDQDSVP--PPDMVEKL 96 (237)
T ss_pred HHHHHHHh--CCCCEEEEECCCCCc--CHhHHHHH
Confidence 44444433 368999999999997 46666655
No 40
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=53.98 E-value=79 Score=31.53 Aligned_cols=80 Identities=11% Similarity=-0.002 Sum_probs=44.7
Q ss_pred HHHHHHHcCCCCEEEEEEcCCC---ChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHHHHHHHhcC
Q 039162 65 FRLLLALYHPRNRYLLHLAADA---SDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILLKVD 141 (406)
Q Consensus 65 ~rLl~aLy~p~n~y~IHvD~ka---~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~ 141 (406)
.+.+....|||-++ |--|.+. +.++-.++.+.+...|..+ .-.|.++ |..-.|-...-+++-..|+..
T Consensus 52 c~~~~~~~HPD~~~-i~p~~~~~~I~idqiR~l~~~~~~~p~e~-~~kv~ii-------~~ad~mt~~AaNaLLK~LEEP 122 (290)
T PRK05917 52 AYKISQKIHPDIHE-FSPQGKGRLHSIETPRAIKKQIWIHPYES-PYKIYII-------HEADRMTLDAISAFLKVLEDP 122 (290)
T ss_pred HHHHhcCCCCCEEE-EecCCCCCcCcHHHHHHHHHHHhhCccCC-CceEEEE-------echhhcCHHHHHHHHHHhhcC
Confidence 34455566888443 3334432 4555555555554333222 2234444 444455555556555577788
Q ss_pred CCCcEEEEecCC
Q 039162 142 KGWNWFIALSAL 153 (406)
Q Consensus 142 ~~wd~fi~LSg~ 153 (406)
++.-+||++|.+
T Consensus 123 p~~~~fiL~~~~ 134 (290)
T PRK05917 123 PQHGVIILTSAK 134 (290)
T ss_pred CCCeEEEEEeCC
Confidence 888999999865
No 41
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=52.19 E-value=1.2e+02 Score=29.43 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=57.6
Q ss_pred EEEecCCCH-HHHHHHHHHHcC---CC-CEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHH
Q 039162 53 YISGGTGDK-DRIFRLLLALYH---PR-NRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNV 127 (406)
Q Consensus 53 lIl~~~~d~-~~l~rLl~aLy~---p~-n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V 127 (406)
+|.+ ++.. +.+.++|.+|.. +. ..=+|-||-.|++.....+.+... ....++|+++..... .|++
T Consensus 3 IIp~-~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~----~~~~~~v~vi~~~~n---~G~~-- 72 (299)
T cd02510 3 IIIF-HNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYY----KKYLPKVKVLRLKKR---EGLI-- 72 (299)
T ss_pred EEEE-ecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHH----hhcCCcEEEEEcCCC---CCHH--
Confidence 4554 7777 999999999863 21 124789998887665444432111 123568888843221 2333
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHH
Q 039162 128 AAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 128 ~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f 167 (406)
.|--.+++.+ .-||++.|.+.+.| +.+-|...+
T Consensus 73 ~a~N~g~~~A-----~gd~i~fLD~D~~~--~~~wL~~ll 105 (299)
T cd02510 73 RARIAGARAA-----TGDVLVFLDSHCEV--NVGWLEPLL 105 (299)
T ss_pred HHHHHHHHHc-----cCCEEEEEeCCccc--CccHHHHHH
Confidence 3333333332 34899999999987 454444443
No 42
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=47.25 E-value=12 Score=29.92 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=15.3
Q ss_pred ecCCCccccChhHHHHHH
Q 039162 150 LSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 150 LSg~DyPLkt~~~i~~~f 167 (406)
+.|.|||++|+.||...|
T Consensus 11 ~~~a~FPI~s~~eL~~al 28 (75)
T PF07747_consen 11 FKGADFPIKSPMELLPAL 28 (75)
T ss_dssp HTTSSSTTBHHHHHHHH-
T ss_pred HhcCCCCCCCHHHHHHhC
Confidence 468899999999999887
No 43
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=47.23 E-value=1.4e+02 Score=24.64 Aligned_cols=92 Identities=16% Similarity=0.089 Sum_probs=48.6
Q ss_pred cCCCHHHHHHHHHHHcCC---CCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHH
Q 039162 57 GTGDKDRIFRLLLALYHP---RNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRA 133 (406)
Q Consensus 57 ~~~d~~~l~rLl~aLy~p---~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~ 133 (406)
.++..+.+.++|+.+... ...++| +|-.+++.....+.++... ...++.++... ...| ...|--.+
T Consensus 5 ~~n~~~~l~~~l~sl~~q~~~~~~iiv-vdd~s~d~t~~~~~~~~~~-----~~~~~~~~~~~---~~~g--~~~~~n~~ 73 (180)
T cd06423 5 AYNEEAVIERTIESLLALDYPKLEVIV-VDDGSTDDTLEILEELAAL-----YIRRVLVVRDK---ENGG--KAGALNAG 73 (180)
T ss_pred ccChHHHHHHHHHHHHhCCCCceEEEE-EeCCCccchHHHHHHHhcc-----ccceEEEEEec---ccCC--chHHHHHH
Confidence 488889999999998643 345445 5555554444444432211 01234333211 1222 23333333
Q ss_pred HHHHHhcCCCCcEEEEecCCCccccChhHHHHH
Q 039162 134 AAILLKVDKGWNWFIALSALDYPLVTQDDLAHA 166 (406)
Q Consensus 134 ~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~ 166 (406)
++. .+-+|++++.+.|++ +.+.|...
T Consensus 74 ~~~-----~~~~~i~~~D~D~~~--~~~~l~~~ 99 (180)
T cd06423 74 LRH-----AKGDIVVVLDADTIL--EPDALKRL 99 (180)
T ss_pred HHh-----cCCCEEEEECCCCCc--ChHHHHHH
Confidence 333 256899999998877 34555443
No 44
>PRK10073 putative glycosyl transferase; Provisional
Probab=45.46 E-value=2.5e+02 Score=27.99 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=56.7
Q ss_pred CCceEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcc
Q 039162 47 PPAFAYYISGGTGDKDRIFRLLLALYHP--RNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGS 124 (406)
Q Consensus 47 p~kiAylIl~~~~d~~~l~rLl~aLy~p--~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 124 (406)
.|++..+|-+ ++..+.|.+.|+.|... .+.=+|=||-.|++....-+.++. ...++|.++.+.+ +|.
T Consensus 5 ~p~vSVIIP~-yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~------~~~~~i~vi~~~n----~G~ 73 (328)
T PRK10073 5 TPKLSIIIPL-YNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYA------ENYPHVRLLHQAN----AGV 73 (328)
T ss_pred CCeEEEEEec-cCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHH------hhCCCEEEEECCC----CCh
Confidence 3568888887 88888999999998532 233345556556554444444432 2457888875432 343
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEecCCCccc
Q 039162 125 SNVAAVLRAAAILLKVDKGWNWFIALSALDYPL 157 (406)
Q Consensus 125 S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPL 157 (406)
..|--.+++. ..=+|+..+.+.|+..
T Consensus 74 --~~arN~gl~~-----a~g~yi~flD~DD~~~ 99 (328)
T PRK10073 74 --SVARNTGLAV-----ATGKYVAFPDADDVVY 99 (328)
T ss_pred --HHHHHHHHHh-----CCCCEEEEECCCCccC
Confidence 2232333332 2338999999999964
No 45
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=44.19 E-value=2.3e+02 Score=26.86 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=57.3
Q ss_pred eEEEEEecC-CCHHHHHHHHHHHc--CCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchH
Q 039162 50 FAYYISGGT-GDKDRIFRLLLALY--HPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSN 126 (406)
Q Consensus 50 iAylIl~~~-~d~~~l~rLl~aLy--~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~ 126 (406)
.||+-+++. +-...+.-++..|- +++..++|+++...+.+.++.|++.. ...-.|..+.........+-..
T Consensus 1 ~ay~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~------~~~~~v~~i~~~~~~~~~~~~~ 74 (240)
T cd02537 1 EAYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVG------WIVREVEPIDPPDSANLLKRPR 74 (240)
T ss_pred CEEEEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcC------CEEEecCccCCcchhhhccchH
Confidence 377777633 22455555666653 45567778888777777777777521 0111122222111110001111
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHH
Q 039162 127 VAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLA 164 (406)
Q Consensus 127 V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~ 164 (406)
..++..=+. +.+. .++|.++.|.+.-+.+.+.++|.
T Consensus 75 ~~~~~~kl~-~~~l-~~~drvlylD~D~~v~~~i~~Lf 110 (240)
T cd02537 75 FKDTYTKLR-LWNL-TEYDKVVFLDADTLVLRNIDELF 110 (240)
T ss_pred HHHHhHHHH-hccc-cccceEEEEeCCeeEccCHHHHh
Confidence 222211011 1122 47999999999999999998884
No 46
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.85 E-value=2.3e+02 Score=25.06 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=50.4
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHH
Q 039162 53 YISGGTGDKDRIFRLLLALYH---PRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAA 129 (406)
Q Consensus 53 lIl~~~~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 129 (406)
+|. +++..+.+.++|++|.. |... +|=+|..+++.-.+.+.+.. ...++.++... -+-|....+.
T Consensus 2 iI~-~~n~~~~l~~~l~sl~~q~~~~~e-iiivD~~s~d~t~~~~~~~~-------~~~~i~~~~~~--~n~g~~~~~n- 69 (202)
T cd04185 2 VVV-TYNRLDLLKECLDALLAQTRPPDH-IIVIDNASTDGTAEWLTSLG-------DLDNIVYLRLP--ENLGGAGGFY- 69 (202)
T ss_pred EEE-eeCCHHHHHHHHHHHHhccCCCce-EEEEECCCCcchHHHHHHhc-------CCCceEEEECc--cccchhhHHH-
Confidence 344 48888999999999963 2233 46667777665444444321 11225554322 2233333332
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCCccc
Q 039162 130 VLRAAAILLKVDKGWNWFIALSALDYPL 157 (406)
Q Consensus 130 tL~~~~~lL~~~~~wd~fi~LSg~DyPL 157 (406)
.++..++ ..+.||++.+.+.+.+-
T Consensus 70 --~~~~~a~--~~~~d~v~~ld~D~~~~ 93 (202)
T cd04185 70 --EGVRRAY--ELGYDWIWLMDDDAIPD 93 (202)
T ss_pred --HHHHHHh--ccCCCEEEEeCCCCCcC
Confidence 2333333 24679999999888875
No 47
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=43.44 E-value=1.7e+02 Score=23.41 Aligned_cols=90 Identities=18% Similarity=0.067 Sum_probs=49.1
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHH
Q 039162 53 YISGGTGDKDRIFRLLLALYHPR--NRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAV 130 (406)
Q Consensus 53 lIl~~~~d~~~l~rLl~aLy~p~--n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~At 130 (406)
+|.+ ++..+.+..+++++..-. +.-++-+|..+++.....+.+..+. ..++..+ ...+..+...+-
T Consensus 2 ii~~-~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~~~~-----~~~~~~g~~~~~ 69 (156)
T cd00761 2 IIPA-YNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPRVIRV-----INEENQGLAAAR 69 (156)
T ss_pred EEee-cCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCCeEEE-----EecCCCChHHHH
Confidence 4555 778899999999986443 4445557776665544444432111 1112221 122333344444
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCccccC
Q 039162 131 LRAAAILLKVDKGWNWFIALSALDYPLVT 159 (406)
Q Consensus 131 L~~~~~lL~~~~~wd~fi~LSg~DyPLkt 159 (406)
-.++..+ +.||++.+.+.+.+...
T Consensus 70 ~~~~~~~-----~~d~v~~~d~D~~~~~~ 93 (156)
T cd00761 70 NAGLKAA-----RGEYILFLDADDLLLPD 93 (156)
T ss_pred HHHHHHh-----cCCEEEEECCCCccCcc
Confidence 4443333 57899999887776443
No 48
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=42.76 E-value=3.7e+02 Score=27.13 Aligned_cols=97 Identities=16% Similarity=0.092 Sum_probs=55.3
Q ss_pred CCceEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCChHHHHHHHHHhccccccccc-cceEEcCCCceeecC
Q 039162 47 PPAFAYYISGGTGDKDRIFRLLLALY---HPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAF-GNVDVVGKPDRVNFV 122 (406)
Q Consensus 47 p~kiAylIl~~~~d~~~l~rLl~aLy---~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~-~NV~vv~~r~~V~Wg 122 (406)
+|++..+|=+...+.+-+++++.++. .|+-.+++=.|. ++++-.+.+++... ++ +++.++..
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~-~~d~~~~~~~~~~~------~~~~~~~~~~~------- 118 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDG-STDETYEILEELGA------EYGPNFRVIYP------- 118 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCC-CChhHHHHHHHHHh------hcCcceEEEec-------
Confidence 57888888874444448999988875 455566555553 44444555554322 33 46665511
Q ss_pred cchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccC
Q 039162 123 GSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVT 159 (406)
Q Consensus 123 g~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt 159 (406)
.....+-.+++-..++. .+.|+++.+-+...|=+.
T Consensus 119 -~~~~~gK~~al~~~l~~-~~~d~V~~~DaD~~~~~d 153 (439)
T COG1215 119 -EKKNGGKAGALNNGLKR-AKGDVVVILDADTVPEPD 153 (439)
T ss_pred -cccCccchHHHHHHHhh-cCCCEEEEEcCCCCCChh
Confidence 11222223444445555 347888888877776543
No 49
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=42.27 E-value=2.6e+02 Score=25.23 Aligned_cols=104 Identities=11% Similarity=-0.059 Sum_probs=55.7
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHH
Q 039162 53 YISGGTGDKDRIFRLLLALYH---PRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAA 129 (406)
Q Consensus 53 lIl~~~~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 129 (406)
+|.+ ++..+.|.++|+.|.. |+..=+|-+|-.+++....-++++.+.. ...++.++.....-.. +-+.-.|
T Consensus 2 iIp~-yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~----~~~~~~~~~~~~~~~~-~~G~~~a 75 (219)
T cd06913 2 ILPV-HNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL----EDSGVIVLVGSHNSPS-PKGVGYA 75 (219)
T ss_pred EEee-cCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC----cccCeEEEEecccCCC-CccHHHH
Confidence 3444 8888999999999963 3344567788877665444444433221 1234555421111111 1122233
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCCccccC-hhHHHHHH
Q 039162 130 VLRAAAILLKVDKGWNWFIALSALDYPLVT-QDDLAHAF 167 (406)
Q Consensus 130 tL~~~~~lL~~~~~wd~fi~LSg~DyPLkt-~~~i~~~f 167 (406)
.-.+++. ..-||++.|.+.|.+.-. .+.+...+
T Consensus 76 ~N~g~~~-----a~gd~i~~lD~D~~~~~~~l~~~~~~~ 109 (219)
T cd06913 76 KNQAIAQ-----SSGRYLCFLDSDDVMMPQRIRLQYEAA 109 (219)
T ss_pred HHHHHHh-----cCCCEEEEECCCccCChhHHHHHHHHH
Confidence 3333322 245899999999985543 23333444
No 50
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=42.00 E-value=1.8e+02 Score=29.13 Aligned_cols=96 Identities=20% Similarity=0.224 Sum_probs=50.0
Q ss_pred CceEEEEEecCCC--HHHHHHHHHHHc-----------------------CCCCEEEEEEcCC-CChHHHHHHHHHhccc
Q 039162 48 PAFAYYISGGTGD--KDRIFRLLLALY-----------------------HPRNRYLLHLAAD-ASDDERLKLAAAVRSV 101 (406)
Q Consensus 48 ~kiAylIl~~~~d--~~~l~rLl~aLy-----------------------~p~n~y~IHvD~k-a~~~~~~~l~~~v~~~ 101 (406)
+.+|||+.|..|- ......+.+++. ||+- +++-.|.+ .+.++-.++.+.+...
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~-~~i~~~~~~i~id~ir~l~~~~~~~ 105 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV-HLVAPDGQSIKKDQIRYLKEEFSKS 105 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEeccccccCCHHHHHHHHHHHhhC
Confidence 4489999874432 233444445553 6663 33444433 2333333444333333
Q ss_pred cccccccceEEcCCCceeecCcchHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 039162 102 PAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSA 152 (406)
Q Consensus 102 ~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg 152 (406)
|... ...|.++.+.. .|-....+++-..|+..++.-+||+++.
T Consensus 106 ~~~~-~~kvviI~~a~-------~~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 106 GVES-NKKVYIIEHAD-------KMTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred Cccc-CceEEEeehHh-------hhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 3222 23576665532 3333344555556777778888998876
No 51
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=41.96 E-value=2.4e+02 Score=24.80 Aligned_cols=96 Identities=9% Similarity=0.010 Sum_probs=53.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CEEEEEEcCCCChHHHHHHHHHhcccccccccc-ceEEcCCCceeecCcchHHHH
Q 039162 53 YISGGTGDKDRIFRLLLALYHPR--NRYLLHLAADASDDERLKLAAAVRSVPAVRAFG-NVDVVGKPDRVNFVGSSNVAA 129 (406)
Q Consensus 53 lIl~~~~d~~~l~rLl~aLy~p~--n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~-NV~vv~~r~~V~Wgg~S~V~A 129 (406)
+|-+ ++..+.|.+.|..+.... ..=+|=+|-.+++...+.++++.+ .++ ++.++.. -++.+...+
T Consensus 3 vIp~-yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~------~~~~~~~~~~~-----~~~~G~~~~ 70 (214)
T cd04196 3 LMAT-YNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYID------KDPFIIILIRN-----GKNLGVARN 70 (214)
T ss_pred EEEe-cCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHh------cCCceEEEEeC-----CCCccHHHH
Confidence 4444 888889999999886421 233455676666554444544332 222 3444322 223344444
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHH
Q 039162 130 VLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 130 tL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f 167 (406)
.-.+ ++. .+.+|+++|.+.|.+. .+.|.+.+
T Consensus 71 ~n~g----~~~-~~g~~v~~ld~Dd~~~--~~~l~~~~ 101 (214)
T cd04196 71 FESL----LQA-ADGDYVFFCDQDDIWL--PDKLERLL 101 (214)
T ss_pred HHHH----HHh-CCCCEEEEECCCcccC--hhHHHHHH
Confidence 3333 222 4679999999998875 34444433
No 52
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=41.95 E-value=87 Score=31.71 Aligned_cols=82 Identities=16% Similarity=0.102 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCCCEEEEEEcCCC-ChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHHHHHHHhcCC
Q 039162 64 IFRLLLALYHPRNRYLLHLAADA-SDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILLKVDK 142 (406)
Q Consensus 64 l~rLl~aLy~p~n~y~IHvD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~ 142 (406)
-.|++.+-.|||-.++-..|.+. +.++-.++.+.+...|..+ .-.|.++.+.+ .|-.+.-+++-..|++.+
T Consensus 64 sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g-~~KV~iI~~a~-------~m~~~AaNaLLKtLEEPp 135 (325)
T PRK06871 64 SCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQG-GNKVVYIQGAE-------RLTEAAANALLKTLEEPR 135 (325)
T ss_pred HHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccC-CceEEEEechh-------hhCHHHHHHHHHHhcCCC
Confidence 45666667788854443334332 4555555655554443222 22455554433 455555566666778888
Q ss_pred CCcEEEEecCC
Q 039162 143 GWNWFIALSAL 153 (406)
Q Consensus 143 ~wd~fi~LSg~ 153 (406)
+.-+||++|.+
T Consensus 136 ~~~~fiL~t~~ 146 (325)
T PRK06871 136 PNTYFLLQADL 146 (325)
T ss_pred CCeEEEEEECC
Confidence 99999999865
No 53
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=41.41 E-value=2.3e+02 Score=25.40 Aligned_cols=96 Identities=10% Similarity=0.146 Sum_probs=51.8
Q ss_pred EEEecCCCHHHHHHHHHHHcCC---CCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHH
Q 039162 53 YISGGTGDKDRIFRLLLALYHP---RNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAA 129 (406)
Q Consensus 53 lIl~~~~d~~~l~rLl~aLy~p---~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 129 (406)
+|.+ ++..+.|.++|+.+..- .+.=+|=||-.+++.-...++++.+ ..++|.++... .-+|.+ .|
T Consensus 2 iIp~-yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~------~~~~i~~~~~~---~n~G~~--~a 69 (224)
T cd06442 2 IIPT-YNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAK------EYPRVRLIVRP---GKRGLG--SA 69 (224)
T ss_pred eEec-cchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHH------hCCceEEEecC---CCCChH--HH
Confidence 3444 88888899998888641 2233456676665543333333222 34566655321 223433 23
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHH
Q 039162 130 VLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 130 tL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f 167 (406)
--.+++.+ . -||++.|.+.|.+ +.+.|...+
T Consensus 70 ~n~g~~~a----~-gd~i~~lD~D~~~--~~~~l~~l~ 100 (224)
T cd06442 70 YIEGFKAA----R-GDVIVVMDADLSH--PPEYIPELL 100 (224)
T ss_pred HHHHHHHc----C-CCEEEEEECCCCC--CHHHHHHHH
Confidence 33444432 2 2899999988776 344444433
No 54
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=41.36 E-value=1.9e+02 Score=28.46 Aligned_cols=98 Identities=12% Similarity=-0.002 Sum_probs=53.0
Q ss_pred CCceEEEEEecCCC--HHHHHHHHHHH-------cCCCCEEEEEEcCCC-ChHHHHHHHHHhccccccccccceEEcCCC
Q 039162 47 PPAFAYYISGGTGD--KDRIFRLLLAL-------YHPRNRYLLHLAADA-SDDERLKLAAAVRSVPAVRAFGNVDVVGKP 116 (406)
Q Consensus 47 p~kiAylIl~~~~d--~~~l~rLl~aL-------y~p~n~y~IHvD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r 116 (406)
...+|||+.|..|- ......+.++| .||+...+...|.+. +.++-.++...+...|... -..|.++.+.
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~-~~kv~iI~~a 102 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEG-DKKVIIIYNS 102 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccC-CceEEEEech
Confidence 35589999984433 23455555555 356644444445443 3334334444444444332 3356666543
Q ss_pred ceeecCcchHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 039162 117 DRVNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSA 152 (406)
Q Consensus 117 ~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg 152 (406)
. .|-.+.-+++-..|+..++..+||+++.
T Consensus 103 d-------~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 103 E-------KMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred h-------hcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 2 2223334444456777778889999884
No 55
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=41.19 E-value=19 Score=31.25 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 039162 6 RRLFTLFSAALLSLLLLLL 24 (406)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (406)
||+|.+++..+++++|+++
T Consensus 1 RW~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLF 19 (130)
T ss_pred CeeeHHHHHHHHHHHHHHH
Confidence 6877666555555554443
No 56
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=40.96 E-value=2.1e+02 Score=26.76 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEcCCC-ChHHHHHHHHHhccccccccccceEEcCCCceeecCc------chHHHHHHHH
Q 039162 61 KDRIFRLLLALYHPRNRYLLHLAADA-SDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVG------SSNVAAVLRA 133 (406)
Q Consensus 61 ~~~l~rLl~aLy~p~n~y~IHvD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg------~S~V~AtL~~ 133 (406)
...+-.-++|+-+.....+|..=+.. ...|...++ ..+||.+..-.....|.. ....+..++-
T Consensus 37 t~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~----------~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~ 106 (191)
T PRK05986 37 TAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE----------FGGGVEFHVMGTGFTWETQDRERDIAAAREGWEE 106 (191)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHh----------cCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHH
Confidence 35677778888888899999998876 455655444 245777764333333432 1233334555
Q ss_pred HHHHHhcCCCCcEEEE---ecCCCccccChhHHHHHHhccCCCCceEe
Q 039162 134 AAILLKVDKGWNWFIA---LSALDYPLVTQDDLAHAFSSVRRDLNFID 178 (406)
Q Consensus 134 ~~~lL~~~~~wd~fi~---LSg~DyPLkt~~~i~~~f~~~~~~~nFI~ 178 (406)
++.++.. .+||-+|+ +-+-+|=|.+.+++.+++...|.+.+-|-
T Consensus 107 a~~~l~~-~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVl 153 (191)
T PRK05986 107 AKRMLAD-ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVI 153 (191)
T ss_pred HHHHHhC-CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEE
Confidence 5555554 78999986 67778889999999999987777776663
No 57
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=39.15 E-value=2.2e+02 Score=31.99 Aligned_cols=115 Identities=10% Similarity=0.066 Sum_probs=64.0
Q ss_pred CCceEEEEEecCCCHHHHHHHHHH----HcCCCCEEEEEE--cCCCChHHHHHHHHHhccccccccccceEEcCCCceee
Q 039162 47 PPAFAYYISGGTGDKDRIFRLLLA----LYHPRNRYLLHL--AADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVN 120 (406)
Q Consensus 47 p~kiAylIl~~~~d~~~l~rLl~a----Ly~p~n~y~IHv--D~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~ 120 (406)
.++++.+|=+ |++.+.+.+++++ |+.|+-.++|=. |-..+.. .+++ +...+|++++|..+.
T Consensus 70 ~~~vsIlVPa-~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~---~~~~------~~~~~p~~~~v~~~~--- 136 (703)
T PRK15489 70 EQPLAIMVPA-WKEYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETIT---EVER------MRRRYKRLVRVEVPH--- 136 (703)
T ss_pred CCceEEEEeC-CCcHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHH---HHHH------HhccCCcEEEEEcCC---
Confidence 3579999988 9999888888876 367854444422 3222222 2332 223467888765332
Q ss_pred cCc-chHHHHHHHHHHHHHh----cCCCCcEEEEecCCCccccChhHHHHHHhccCCCCceEe
Q 039162 121 FVG-SSNVAAVLRAAAILLK----VDKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFID 178 (406)
Q Consensus 121 Wgg-~S~V~AtL~~~~~lL~----~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~~~~~~nFI~ 178 (406)
+| -+--.|-=.+++.+++ .+..++.++..-+.|.|=-.+-....++. .+..+|.
T Consensus 137 -~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~~~~~---~~~~~iQ 195 (703)
T PRK15489 137 -DGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYFNYLL---PRKDLVQ 195 (703)
T ss_pred -CCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHHHhhc---CCcceee
Confidence 23 2333333333333322 23567789999999998655444433332 2345666
No 58
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=37.39 E-value=3.6e+02 Score=25.47 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=62.2
Q ss_pred eEEEEEecCCCHHHHHHHHHHH---cCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchH
Q 039162 50 FAYYISGGTGDKDRIFRLLLAL---YHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSN 126 (406)
Q Consensus 50 iAylIl~~~~d~~~l~rLl~aL---y~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~ 126 (406)
.-++++|+.|....+.||++++ |.|+.++ +--+...+ .++.+.+..+. ......|..+...|+ |.=.=.|-
T Consensus 40 ~~lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS---~~k~~~F~~~~-a~~~a~~~~ipRsRe-VgQS~ltS 113 (211)
T KOG3339|consen 40 STLVVLGSGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMS---EQKARSFELSL-AHCKAKNYEIPRSRE-VGQSWLTS 113 (211)
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHhhcCceEEE-EecCchhh---HHHHHhhhccc-cccchhheecchhhh-hhhhhhhh
Confidence 5678888888899999999987 5676444 22222222 22333322211 122234555544333 53333455
Q ss_pred HHHHHHHHHHHHhc--CCCCcEEEEec-CCCccccChhHHHHHHh
Q 039162 127 VAAVLRAAAILLKV--DKGWNWFIALS-ALDYPLVTQDDLAHAFS 168 (406)
Q Consensus 127 V~AtL~~~~~lL~~--~~~wd~fi~LS-g~DyPLkt~~~i~~~f~ 168 (406)
|-++++++...+-. ...-|-+.+.- |.|.|+-=-..+.+.+.
T Consensus 114 v~Tti~all~s~~lv~RirPdlil~NGPGTCv~i~~~a~l~~iL~ 158 (211)
T KOG3339|consen 114 VFTTIWALLQSFVLVWRIRPDLILCNGPGTCVPICLSAYLMEILG 158 (211)
T ss_pred HHHHHHHHHHHheEEEecCCCEEEECCCCcEeHHHHHHHHHHHhC
Confidence 66666665554432 12345555444 78999887777766653
No 59
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=34.95 E-value=3e+02 Score=23.73 Aligned_cols=86 Identities=8% Similarity=-0.020 Sum_probs=48.4
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHH
Q 039162 53 YISGGTGDKDRIFRLLLALYH---PRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAA 129 (406)
Q Consensus 53 lIl~~~~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 129 (406)
+|. +++..+.+.++|.+|.. ++.. +|=+|..+++.....++++.. . .+.+... ..+| ...|
T Consensus 3 vi~-~~n~~~~l~~~l~sl~~q~~~~~e-vivvDd~s~d~~~~~~~~~~~------~--~~~~~~~----~~~g--~~~a 66 (202)
T cd06433 3 ITP-TYNQAETLEETIDSVLSQTYPNIE-YIVIDGGSTDGTVDIIKKYED------K--ITYWISE----PDKG--IYDA 66 (202)
T ss_pred EEe-ccchHHHHHHHHHHHHhCCCCCce-EEEEeCCCCccHHHHHHHhHh------h--cEEEEec----CCcC--HHHH
Confidence 344 48888999999998853 3322 456677676655444443211 0 2333322 2233 3333
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCCccccC
Q 039162 130 VLRAAAILLKVDKGWNWFIALSALDYPLVT 159 (406)
Q Consensus 130 tL~~~~~lL~~~~~wd~fi~LSg~DyPLkt 159 (406)
.-.++ +. .+-||++.|.+.|.+...
T Consensus 67 ~n~~~----~~-a~~~~v~~ld~D~~~~~~ 91 (202)
T cd06433 67 MNKGI----AL-ATGDIIGFLNSDDTLLPG 91 (202)
T ss_pred HHHHH----HH-cCCCEEEEeCCCcccCch
Confidence 33333 33 245899999999988753
No 60
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=33.67 E-value=1.3e+02 Score=29.46 Aligned_cols=99 Identities=22% Similarity=0.194 Sum_probs=55.2
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEE---EEEEc-CCCChHHHHHHHHHhccccccccccceEEcCCCc--eeecCcch
Q 039162 52 YYISGGTGDKDRIFRLLLALYHPRNRY---LLHLA-ADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPD--RVNFVGSS 125 (406)
Q Consensus 52 ylIl~~~~d~~~l~rLl~aLy~p~n~y---~IHvD-~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~--~V~Wgg~S 125 (406)
.+|+++.+...+..++|+.|.+-+|.. ++|-. .+-+.+.+++|.. ..+|.++.-.- .-.+.+..
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~----------~q~v~~vd~~~~~~~~~~~~~ 73 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP----------DQDVWFVDASCVIDPDYLGKS 73 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh----------hhhhheecceEEeeccccccc
Confidence 466665666777778888888766643 33442 3345555665543 22232221000 00011110
Q ss_pred HH--HHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHH
Q 039162 126 NV--AAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDL 163 (406)
Q Consensus 126 ~V--~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i 163 (406)
.. .-.+..+|.+. ..++-+++|.+..+|+++.+.+
T Consensus 74 ~~~~~~~~K~lA~l~---ssFeevllLDaD~vpl~~p~~l 110 (271)
T PF11051_consen 74 FSKKGFQNKWLALLF---SSFEEVLLLDADNVPLVDPEKL 110 (271)
T ss_pred cccCCchhhhhhhhh---CCcceEEEEcCCcccccCHHHH
Confidence 11 22234445443 4688899999999999999887
No 61
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=33.32 E-value=2.9e+02 Score=23.20 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=53.6
Q ss_pred EEEEecCCCH-HHHHHHHHHHcCCC-CEEEEEEcCCCCh-HHHHHHHHHhccccccccccceEEcCCCceeecCcchHHH
Q 039162 52 YYISGGTGDK-DRIFRLLLALYHPR-NRYLLHLAADASD-DERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVA 128 (406)
Q Consensus 52 ylIl~~~~d~-~~l~rLl~aLy~p~-n~y~IHvD~ka~~-~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 128 (406)
++|. +|+.. +-+...++.+.-.+ +.+.+-+....+. +...++.+.++..+ .-..|-++.+ ...|.+..+.
T Consensus 3 ili~-sHG~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~---~~~~viil~D---l~GGSp~n~~ 75 (122)
T cd00006 3 IIIA-THGGFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELD---SGEGVLILTD---LFGGSPNNAA 75 (122)
T ss_pred EEEE-cCHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCCcEEEEEe---CCCCCHHHHH
Confidence 3444 58864 56778888886444 6777877776554 34666766655321 2345666532 4445554443
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCCcccc
Q 039162 129 AVLRAAAILLKVDKGWNWFIALSALDYPLV 158 (406)
Q Consensus 129 AtL~~~~~lL~~~~~wd~fi~LSg~DyPLk 158 (406)
..+ +... .-+..+||-+.|+.
T Consensus 76 ~~~------~~~~---~~~~visG~nlpml 96 (122)
T cd00006 76 ARL------SMEH---PPVEVIAGVNLPML 96 (122)
T ss_pred HHH------HhcC---CCEEEEEccCHHHH
Confidence 322 2221 34678999999984
No 62
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=33.03 E-value=3.4e+02 Score=24.13 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=49.7
Q ss_pred EEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHH
Q 039162 52 YYISGGTGDKDRIFRLLLALYHP--RNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAA 129 (406)
Q Consensus 52 ylIl~~~~d~~~l~rLl~aLy~p--~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 129 (406)
.+|.+ ++..+.+.++|+++..- .+.-+|=+|..+++.....++ . .++.++... .|.+ .
T Consensus 3 vii~~-~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~----------~-~~~~~~~~~-----~g~~---~ 62 (221)
T cd02522 3 IIIPT-LNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIAR----------S-AGVVVISSP-----KGRA---R 62 (221)
T ss_pred EEEEc-cCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHh----------c-CCeEEEeCC-----cCHH---H
Confidence 45554 88888888888887532 223456667766554332222 1 456655422 2332 1
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHH
Q 039162 130 VLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHA 166 (406)
Q Consensus 130 tL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~ 166 (406)
.++ .+++. ..-+|++.+.+.++| +.+.+.+.
T Consensus 63 a~n---~g~~~-a~~~~i~~~D~D~~~--~~~~l~~l 93 (221)
T cd02522 63 QMN---AGAAA-ARGDWLLFLHADTRL--PPDWDAAI 93 (221)
T ss_pred HHH---HHHHh-ccCCEEEEEcCCCCC--ChhHHHHH
Confidence 122 22332 235899999999988 45555553
No 63
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.80 E-value=26 Score=27.96 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=15.8
Q ss_pred ecCCCccccChhHHHHHH
Q 039162 150 LSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 150 LSg~DyPLkt~~~i~~~f 167 (406)
+-|.|||++++.+|...|
T Consensus 16 ~k~a~fPInn~~eL~~AL 33 (80)
T COG4746 16 LKGADFPINNPEELVAAL 33 (80)
T ss_pred HccCCCCCCCHHHHHHhc
Confidence 457899999999999877
No 64
>PRK08309 short chain dehydrogenase; Provisional
Probab=31.62 E-value=3.5e+02 Score=24.60 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHHHHHHH
Q 039162 59 GDKDRIFRLLLALYHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILL 138 (406)
Q Consensus 59 ~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL 138 (406)
++.+....+...+..+.+..++..|-....+....++..+ ..++.+.++ |.|-....-++...+++.+=
T Consensus 31 R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l------~~~g~id~l-----v~~vh~~~~~~~~~~~~~~g 99 (177)
T PRK08309 31 RREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTI------EKNGPFDLA-----VAWIHSSAKDALSVVCRELD 99 (177)
T ss_pred CCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHH------HHcCCCeEE-----EEeccccchhhHHHHHHHHc
Confidence 4566667666656545566677788766555444444322 223443332 55666665555556555544
Q ss_pred hcCCCCcEEEEecCC
Q 039162 139 KVDKGWNWFIALSAL 153 (406)
Q Consensus 139 ~~~~~wd~fi~LSg~ 153 (406)
-.++.|.++|.|...
T Consensus 100 v~~~~~~~~h~~gs~ 114 (177)
T PRK08309 100 GSSETYRLFHVLGSA 114 (177)
T ss_pred cCCCCceEEEEeCCc
Confidence 345788888888433
No 65
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=31.56 E-value=8.7e+02 Score=28.10 Aligned_cols=111 Identities=12% Similarity=0.161 Sum_probs=58.0
Q ss_pred CCCceEEEEEecCCCH-HHHHHHHHHH---cCCCCE-EEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceee
Q 039162 46 YPPAFAYYISGGTGDK-DRIFRLLLAL---YHPRNR-YLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVN 120 (406)
Q Consensus 46 ~p~kiAylIl~~~~d~-~~l~rLl~aL---y~p~n~-y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~ 120 (406)
..|+++.+|-+ +++. +.+++.+.++ +.|... =++=+|..++++. .++++ + .+|+++.... +
T Consensus 258 ~~P~VsViIPt-YNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t-~~la~---------~-~~v~yI~R~~--n 323 (852)
T PRK11498 258 LWPTVDIFVPT-YNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEF-RQFAQ---------E-VGVKYIARPT--H 323 (852)
T ss_pred CCCcEEEEEec-CCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHH-HHHHH---------H-CCcEEEEeCC--C
Confidence 34689999988 6655 5566666653 445432 2445565555443 33332 1 2577664321 1
Q ss_pred cCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccCh-hHHHHHHhccCCCCceEe
Q 039162 121 FVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQ-DDLAHAFSSVRRDLNFID 178 (406)
Q Consensus 121 Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~-~~i~~~f~~~~~~~nFI~ 178 (406)
-+| . +. ++..+++. .+-||++.+.+.+.|-.+. +.+..+|.+ +.+.-++.
T Consensus 324 ~~g--K-AG---nLN~aL~~-a~GEyIavlDAD~ip~pdfL~~~V~~f~~-dP~VglVQ 374 (852)
T PRK11498 324 EHA--K-AG---NINNALKY-AKGEFVAIFDCDHVPTRSFLQMTMGWFLK-DKKLAMMQ 374 (852)
T ss_pred Ccc--h-HH---HHHHHHHh-CCCCEEEEECCCCCCChHHHHHHHHHHHh-CCCeEEEE
Confidence 121 1 11 12223333 3569999999999986543 233344433 33444543
No 66
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=31.19 E-value=1.7e+02 Score=28.85 Aligned_cols=81 Identities=5% Similarity=-0.091 Sum_probs=42.3
Q ss_pred HHHHHHcCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHHHHHHHhcCCCCc
Q 039162 66 RLLLALYHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILLKVDKGWN 145 (406)
Q Consensus 66 rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd 145 (406)
+++.+..|||-+++.-....-..++-.++.+.+...+.....-.|. +-|..-.|-.+.-+++=-.|++.++.-
T Consensus 47 ~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~~~KV~-------II~~ae~m~~~AaNaLLK~LEEPp~~t 119 (261)
T PRK05818 47 LKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESNGKKIY-------IIYGIEKLNKQSANSLLKLIEEPPKNT 119 (261)
T ss_pred HHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcCCCEEE-------EeccHhhhCHHHHHHHHHhhcCCCCCe
Confidence 5566667888444321111123444444444332211101112344 445555566555666666778888889
Q ss_pred EEEEecCC
Q 039162 146 WFIALSAL 153 (406)
Q Consensus 146 ~fi~LSg~ 153 (406)
+||++|.+
T Consensus 120 ~fiLit~~ 127 (261)
T PRK05818 120 YGIFTTRN 127 (261)
T ss_pred EEEEEECC
Confidence 99999854
No 67
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=28.61 E-value=1.9e+02 Score=26.60 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEcCC-CChHHHHHHHHHhccccccccccceEEcCCCceeecCcc-h-----HHHHHHHH
Q 039162 61 KDRIFRLLLALYHPRNRYLLHLAAD-ASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGS-S-----NVAAVLRA 133 (406)
Q Consensus 61 ~~~l~rLl~aLy~p~n~y~IHvD~k-a~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~-S-----~V~AtL~~ 133 (406)
...+=-.++|+=|....+++..=+. ....|...+ ...+||.+..-.....|..- + ..+.-++-
T Consensus 18 TAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l----------~~l~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~ 87 (172)
T PF02572_consen 18 TAALGLALRAAGHGMRVLIVQFLKGGRYSGELKAL----------KKLPNVEIERFGKGFVWRMNEEEEDRAAAREGLEE 87 (172)
T ss_dssp HHHHHHHHHHHCTT--EEEEESS--SS--HHHHHH----------GGGT--EEEE--TT----GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHH----------HhCCeEEEEEcCCcccccCCCcHHHHHHHHHHHHH
Confidence 3567778899999999999999887 344454433 34677777643334555433 2 23333333
Q ss_pred HHHHHhcCCCCcEEEE---ecCCCccccChhHHHHHHhccCCCCceEe
Q 039162 134 AAILLKVDKGWNWFIA---LSALDYPLVTQDDLAHAFSSVRRDLNFID 178 (406)
Q Consensus 134 ~~~lL~~~~~wd~fi~---LSg~DyPLkt~~~i~~~f~~~~~~~nFI~ 178 (406)
++.++. +..||-+|+ +-+-++=+.+.+++.+++...|...+-|-
T Consensus 88 a~~~i~-~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVl 134 (172)
T PF02572_consen 88 AKEAIS-SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVL 134 (172)
T ss_dssp HHHHTT--TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEE
T ss_pred HHHHHh-CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEE
Confidence 333443 378999997 66777888999999999987777676663
No 68
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=27.44 E-value=4.2e+02 Score=23.16 Aligned_cols=97 Identities=18% Similarity=0.097 Sum_probs=52.0
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CC-CEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHH
Q 039162 53 YISGGTGDKDRIFRLLLALYH---PR-NRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVA 128 (406)
Q Consensus 53 lIl~~~~d~~~l~rLl~aLy~---p~-n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 128 (406)
+|-+ +++.+.+.++|+++.. |. +.-+|=+|-.+++.-. ++.... ...|.+... ..++| .-.
T Consensus 2 vIp~-~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~-~~~~~~--------~~~~~~~~~---~~~~g--k~~ 66 (183)
T cd06438 2 LIPA-HNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTA-QVARAA--------GATVLERHD---PERRG--KGY 66 (183)
T ss_pred EEec-cchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHH-HHHHHc--------CCeEEEeCC---CCCCC--HHH
Confidence 4555 8888899999998853 32 2334456655655433 232211 112332211 22344 333
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHH
Q 039162 129 AVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHA 166 (406)
Q Consensus 129 AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~ 166 (406)
|.-.+++.+.+...+.||++.+.+.+.|- .+.|...
T Consensus 67 aln~g~~~a~~~~~~~d~v~~~DaD~~~~--p~~l~~l 102 (183)
T cd06438 67 ALDFGFRHLLNLADDPDAVVVFDADNLVD--PNALEEL 102 (183)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCCCCC--hhHHHHH
Confidence 44455555543335789999999988874 4444333
No 69
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=27.00 E-value=6.4e+02 Score=25.08 Aligned_cols=107 Identities=10% Similarity=0.056 Sum_probs=58.4
Q ss_pred CCCceEEEEEecCCCHHHHHHHHHHHc-----CCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceee
Q 039162 46 YPPAFAYYISGGTGDKDRIFRLLLALY-----HPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVN 120 (406)
Q Consensus 46 ~p~kiAylIl~~~~d~~~l~rLl~aLy-----~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~ 120 (406)
+.+++..+|-+ +++.+.+.++++++. .+.+.=+|=+|-.|++.-.+.+++..+. ...+|..+..
T Consensus 4 ~~~~vSVVIP~-yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~-----~~~~v~~i~~----- 72 (325)
T PRK10714 4 PIKKVSVVIPV-YNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQA-----PDSHIVAILL----- 72 (325)
T ss_pred CCCeEEEEEcc-cCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhh-----cCCcEEEEEe-----
Confidence 44568888887 888887877777653 1223335666776666544444432211 1234543311
Q ss_pred cCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHHhcc
Q 039162 121 FVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSV 170 (406)
Q Consensus 121 Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~~ 170 (406)
-.++..-.|...+++.+ +-||++.+.+.+- .+.++|.+.+...
T Consensus 73 ~~n~G~~~A~~~G~~~A-----~gd~vv~~DaD~q--~~p~~i~~l~~~~ 115 (325)
T PRK10714 73 NRNYGQHSAIMAGFSHV-----TGDLIITLDADLQ--NPPEEIPRLVAKA 115 (325)
T ss_pred CCCCCHHHHHHHHHHhC-----CCCEEEEECCCCC--CCHHHHHHHHHHH
Confidence 12233334444444432 4589998888775 3666666655443
No 70
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=26.74 E-value=2.7e+02 Score=24.96 Aligned_cols=92 Identities=12% Similarity=0.042 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHcC------CCCEEEEEEcCCCChHHHHHHHHHhccccccccccc-eEEcCCCceeecCcchHHHHH
Q 039162 58 TGDKDRIFRLLLALYH------PRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGN-VDVVGKPDRVNFVGSSNVAAV 130 (406)
Q Consensus 58 ~~d~~~l~rLl~aLy~------p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~N-V~vv~~r~~V~Wgg~S~V~At 130 (406)
++..+.+.++|+.+.. +.+.=+|-+|-.+++.-...++++.+ .+++ |+++.... ..|.+ .|.
T Consensus 6 yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~------~~~~~i~~i~~~~---n~G~~--~a~ 74 (211)
T cd04188 6 YNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLAR------KNPALIRVLTLPK---NRGKG--GAV 74 (211)
T ss_pred cChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHH------hCCCcEEEEEccc---CCCcH--HHH
Confidence 7766666666666532 12344566888777665554554332 2333 35553221 23332 344
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHH
Q 039162 131 LRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 131 L~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f 167 (406)
..+++.+ .-||++.+.+.+.+ +.+.|.+.+
T Consensus 75 ~~g~~~a-----~gd~i~~ld~D~~~--~~~~l~~l~ 104 (211)
T cd04188 75 RAGMLAA-----RGDYILFADADLAT--PFEELEKLE 104 (211)
T ss_pred HHHHHHh-----cCCEEEEEeCCCCC--CHHHHHHHH
Confidence 4444443 22899999988874 344444433
No 71
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=25.11 E-value=6.4e+02 Score=25.65 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=56.1
Q ss_pred eEEEEEecCCCHHHHHHHHHHHcCC-----CCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCc--eeecC
Q 039162 50 FAYYISGGTGDKDRIFRLLLALYHP-----RNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPD--RVNFV 122 (406)
Q Consensus 50 iAylIl~~~~d~~~l~rLl~aLy~p-----~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~--~V~Wg 122 (406)
++.+|++ .+-++.++|.|++|..- ...++|-.|.... +..+.++.+. .+|.++.... ..+.|
T Consensus 2 ~PVlv~a-yNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~-~~~~~v~~~~---------~~i~~i~~~~~~~~~~~ 70 (334)
T cd02514 2 IPVLVIA-CNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE-EVADVAKSFG---------DGVTHIQHPPISIKNVN 70 (334)
T ss_pred cCEEEEe-cCCHHHHHHHHHHHHhccccCCCceEEEEeCCCch-HHHHHHHhhc---------cccEEEEcccccccccC
Confidence 3567776 88899999999999743 3457777787432 2222232211 1333332211 11111
Q ss_pred ------c-chHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccC
Q 039162 123 ------G-SSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVT 159 (406)
Q Consensus 123 ------g-~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt 159 (406)
+ ..+...-..++..++.. .+.+++|.|-+.+.|-..
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~-~~~~~vIILEDDl~~sPd 113 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNL-FGYSFVIILEDDLDIAPD 113 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHh-cCCCEEEEECCCCccCHh
Confidence 2 23333334466666665 478999999999887654
No 72
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.14 E-value=5.9e+02 Score=25.27 Aligned_cols=99 Identities=20% Similarity=0.185 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcCC-----CChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHH
Q 039162 59 GDKDRIFRLLLALYHPRNRYLLHLAAD-----ASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRA 133 (406)
Q Consensus 59 ~d~~~l~rLl~aLy~p~n~y~IHvD~k-----a~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~ 133 (406)
=|.+.++++++.+-...-.=++=.-.. -+.+||.++.+.+... .-++|-|+ +.=++.|. .-+++.
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~----~~grvpvi-----~Gv~~~~t-~~ai~~ 95 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVET----VAGRVPVF-----VGATTLNT-RDTIAR 95 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHH----hCCCCCEE-----EEeccCCH-HHHHHH
Confidence 378999999999865553332222211 1577888876644321 12334433 22233333 556677
Q ss_pred HHHHHhcCCCCcEEEEecCCCccccChhHHHHHHhcc
Q 039162 134 AAILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSV 170 (406)
Q Consensus 134 ~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~~ 170 (406)
++.+-+. .-|.+..+...-||+ ++++|.++|...
T Consensus 96 a~~A~~~--Gad~vlv~~P~y~~~-~~~~l~~yf~~v 129 (309)
T cd00952 96 TRALLDL--GADGTMLGRPMWLPL-DVDTAVQFYRDV 129 (309)
T ss_pred HHHHHHh--CCCEEEECCCcCCCC-CHHHHHHHHHHH
Confidence 7777664 568888888876665 789999999775
No 73
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=23.65 E-value=4.3e+02 Score=25.90 Aligned_cols=97 Identities=18% Similarity=0.094 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHcCCCCEEEEEEcCC-----CChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHHH
Q 039162 60 DKDRIFRLLLALYHPRNRYLLHLAAD-----ASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAA 134 (406)
Q Consensus 60 d~~~l~rLl~aLy~p~n~y~IHvD~k-----a~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~ 134 (406)
|.+.++++++.+-..+-+-++=.-.. -+.+||.++.+.+... .-+++-|+-. | | .+ ..-++..+
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~----~~g~~pvi~g---v--~-~~-t~~ai~~a 92 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVST----AKGKVPVYTG---V--G-GN-TSDAIEIA 92 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHH----hCCCCcEEEe---c--C-cc-HHHHHHHH
Confidence 78899999999976654444422221 2577888877644321 1234444411 2 3 34 67778888
Q ss_pred HHHHhcCCCCcEEEEecCCCccccChhHHHHHHhcc
Q 039162 135 AILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSV 170 (406)
Q Consensus 135 ~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~~ 170 (406)
+.+.+. ..|.++.+...-++ .++++|.++|...
T Consensus 93 ~~a~~~--Gadav~~~pP~y~~-~s~~~i~~~f~~v 125 (296)
T TIGR03249 93 RLAEKA--GADGYLLLPPYLIN-GEQEGLYAHVEAV 125 (296)
T ss_pred HHHHHh--CCCEEEECCCCCCC-CCHHHHHHHHHHH
Confidence 887664 56777777666555 5899999999765
No 74
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.57 E-value=5.9e+02 Score=27.79 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=56.0
Q ss_pred CceEEEEEecCC--CHHHHHHHHHHHcCCC--------------------CEEEEEEcCCC--ChHHHHHHHHHhccccc
Q 039162 48 PAFAYYISGGTG--DKDRIFRLLLALYHPR--------------------NRYLLHLAADA--SDDERLKLAAAVRSVPA 103 (406)
Q Consensus 48 ~kiAylIl~~~~--d~~~l~rLl~aLy~p~--------------------n~y~IHvD~ka--~~~~~~~l~~~v~~~~~ 103 (406)
+.+|||+.|..| .....+.+.++|.-++ +.-++.+|+.+ ..++..+|...++..|.
T Consensus 37 ~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~ 116 (576)
T PRK14965 37 VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPS 116 (576)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccc
Confidence 559999987443 3345556666776321 22256678754 34455556666665554
Q ss_pred cccccceEEcCCCceeecCcchHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 039162 104 VRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSA 152 (406)
Q Consensus 104 ~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg 152 (406)
.. --.|.++.+.+..+ ....+++-..|+..++.-.||+.+.
T Consensus 117 ~~-~~KVvIIdev~~Lt-------~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 117 RS-RYKIFIIDEVHMLS-------TNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred cC-CceEEEEEChhhCC-------HHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 33 23577776654333 2334555556666667778888773
No 75
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=22.22 E-value=5.3e+02 Score=22.45 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=31.1
Q ss_pred HHHHHHHHHHc--CCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcC
Q 039162 62 DRIFRLLLALY--HPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVG 114 (406)
Q Consensus 62 ~~l~rLl~aLy--~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~ 114 (406)
+++...+++.. +|+-.++|..|++++-+...++...++.. .+.+|.++.
T Consensus 84 ~~L~~~L~~~~~~~~~~~V~I~aD~~~~~~~vv~vmd~l~~a----G~~~v~l~t 134 (141)
T PRK11267 84 ETMITALDALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQA----GYLKIGLVG 134 (141)
T ss_pred HHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHc----CCCeEEEEe
Confidence 55555555542 57778889999999877666655544432 245666654
No 76
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.83 E-value=6.6e+02 Score=27.63 Aligned_cols=97 Identities=20% Similarity=0.166 Sum_probs=56.3
Q ss_pred CceEEEEEecCC--CHHHHHHHHHHHcC----------------------CCCEEEEEEcCCC--ChHHHHHHHHHhccc
Q 039162 48 PAFAYYISGGTG--DKDRIFRLLLALYH----------------------PRNRYLLHLAADA--SDDERLKLAAAVRSV 101 (406)
Q Consensus 48 ~kiAylIl~~~~--d~~~l~rLl~aLy~----------------------p~n~y~IHvD~ka--~~~~~~~l~~~v~~~ 101 (406)
+.+|||+.|..| ..-..+.+.++|+- +.+.-++-+|+.+ +.++..+|...+...
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~ 113 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYA 113 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhh
Confidence 558999987444 23444555556651 1233456778865 355555666555555
Q ss_pred cccccccceEEcCCCceeecCcchHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 039162 102 PAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSA 152 (406)
Q Consensus 102 ~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg 152 (406)
|.... ..|.++.+.+..+=+ ..+++-..|+..++.-.||+++.
T Consensus 114 P~~~~-~KVvIIDEah~Lt~~-------A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 114 PAQSR-YRIFIVDEAHMVTTA-------GFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred hhcCC-ceEEEEECCCcCCHH-------HHHHHHHHHhcCCCCeEEEEEeC
Confidence 54433 358888776544422 23333345666677888898883
No 77
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=21.70 E-value=1.7e+02 Score=24.46 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHc--CCCC-EEEEEEcCCCChHHHHHHHHHhccccccccccceEEcC
Q 039162 60 DKDRIFRLLLALY--HPRN-RYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVG 114 (406)
Q Consensus 60 d~~~l~rLl~aLy--~p~n-~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~ 114 (406)
+.+.+...++.+. +|+. .+.|+.|++++-+...++...++.. .+.+|.++-
T Consensus 74 ~~~~L~~~l~~~~~~~~~~~~v~i~aD~~~~y~~vv~vl~~l~~~----g~~~v~l~t 127 (130)
T PF02472_consen 74 DLEELEARLKELKQKNPDPVRVLIRADKDAPYQDVVDVLDALREA----GFTKVSLAT 127 (130)
T ss_dssp -CCCHHHHHHHHCCC-TTS--EEEEE-TTS-HHHHHHHHHHHHHT----T---EE-TT
T ss_pred chHHHHHHHHHhhccCCCcceEEEEeCCCCCHHHHHHHHHHHHHc----CCCEEEEEE
Confidence 3466777777775 3555 7899999998877655555444322 245666653
No 78
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=21.65 E-value=5.6e+02 Score=22.53 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHc--CCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcC
Q 039162 60 DKDRIFRLLLALY--HPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVG 114 (406)
Q Consensus 60 d~~~l~rLl~aLy--~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~ 114 (406)
+.+.+...+.++. .++..++|+-|++++-+...++...++.. .+.+|.++.
T Consensus 80 ~~~~l~~~l~~~~~~~~~~~v~i~aD~~v~y~~vv~vm~~l~~a----G~~~v~L~t 132 (137)
T COG0848 80 SLEELEAALAALAKGKKNPRVVIRADKNVKYGTVVKVMDLLKEA----GFKKVGLVT 132 (137)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHc----CCceEEEEe
Confidence 4567777777776 44446899999999877777766655533 356777764
No 79
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=21.03 E-value=3.8e+02 Score=27.09 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=46.8
Q ss_pred HHHHHHHcCCCCEEEEEEcCC---CChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHHHHHHHhcC
Q 039162 65 FRLLLALYHPRNRYLLHLAAD---ASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILLKVD 141 (406)
Q Consensus 65 ~rLl~aLy~p~n~y~IHvD~k---a~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~ 141 (406)
.|++.+..|||-.+ |--+.+ -+.++..++.+.+...|... .-.|.++.+. =.|-.+.-+++-..|++.
T Consensus 65 C~~~~~g~HPD~~~-i~p~~~~~~I~idqiR~l~~~~~~~~~~g-~~kV~iI~~a-------e~m~~~AaNaLLKtLEEP 135 (334)
T PRK07993 65 CQLMQAGTHPDYYT-LTPEKGKSSLGVDAVREVTEKLYEHARLG-GAKVVWLPDA-------ALLTDAAANALLKTLEEP 135 (334)
T ss_pred HHHHHcCCCCCEEE-EecccccccCCHHHHHHHHHHHhhccccC-CceEEEEcch-------HhhCHHHHHHHHHHhcCC
Confidence 46667778998443 333332 24555555555554333211 2245555443 355555556666678888
Q ss_pred CCCcEEEEecCC
Q 039162 142 KGWNWFIALSAL 153 (406)
Q Consensus 142 ~~wd~fi~LSg~ 153 (406)
++.-+||+++.+
T Consensus 136 p~~t~fiL~t~~ 147 (334)
T PRK07993 136 PENTWFFLACRE 147 (334)
T ss_pred CCCeEEEEEECC
Confidence 899999999975
No 80
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=20.96 E-value=6.2e+02 Score=22.83 Aligned_cols=101 Identities=11% Similarity=-0.022 Sum_probs=51.9
Q ss_pred EEEecCCCH-HHHHHHHHHHcC---CCCEEEEEEcCCCChHH-HHHHHHHhccccccccccceEEcCCCceeecCcchHH
Q 039162 53 YISGGTGDK-DRIFRLLLALYH---PRNRYLLHLAADASDDE-RLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNV 127 (406)
Q Consensus 53 lIl~~~~d~-~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~-~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V 127 (406)
+|-+ ++.. +.|.++++.|.. |+-. +|=+|-.+++.. ...+++..+. ...++.++... -..|+ ..
T Consensus 3 iip~-~ne~~~~l~~~l~sl~~q~~~~~e-iiVvdd~s~D~t~~~~i~~~~~~-----~~~~i~~i~~~--~~~G~--~~ 71 (236)
T cd06435 3 HVPC-YEEPPEMVKETLDSLAALDYPNFE-VIVIDNNTKDEALWKPVEAHCAQ-----LGERFRFFHVE--PLPGA--KA 71 (236)
T ss_pred eEee-CCCcHHHHHHHHHHHHhCCCCCcE-EEEEeCCCCchhHHHHHHHHHHH-----hCCcEEEEEcC--CCCCC--ch
Confidence 3444 7764 789999888853 3333 455565554443 2334332221 12356655322 12343 11
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHHhc
Q 039162 128 AAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSS 169 (406)
Q Consensus 128 ~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~ 169 (406)
.|.-.+++.+ + .+.||++.+-+.+. .+.+.|.+....
T Consensus 72 ~a~n~g~~~a-~--~~~d~i~~lD~D~~--~~~~~l~~l~~~ 108 (236)
T cd06435 72 GALNYALERT-A--PDAEIIAVIDADYQ--VEPDWLKRLVPI 108 (236)
T ss_pred HHHHHHHHhc-C--CCCCEEEEEcCCCC--cCHHHHHHHHHH
Confidence 2222333332 1 34799999888875 466766665433
No 81
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=20.85 E-value=6.6e+02 Score=23.06 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcC-C-CCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHHHHHHH
Q 039162 61 KDRIFRLLLALYH-P-RNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILL 138 (406)
Q Consensus 61 ~~~l~rLl~aLy~-p-~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL 138 (406)
-..+.+.++++.. + -..++|-++.+. ..++..... ....++.+ ..+|.++..+...+++.+
T Consensus 31 ~pli~~~l~~l~~~~~~~~ivvv~~~~~----~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~sv~~~l~~~- 93 (227)
T PRK00155 31 KPILEHTLEAFLAHPRIDEIIVVVPPDD----RPDFAELLL-----AKDPKVTV-------VAGGAERQDSVLNGLQAL- 93 (227)
T ss_pred EEHHHHHHHHHHcCCCCCEEEEEeChHH----HHHHHHHhh-----ccCCceEE-------eCCcchHHHHHHHHHHhC-
Confidence 4567888888853 2 235666665432 112211110 00122322 234556666666666543
Q ss_pred hcCCCCcEEEEecCCCccccChhHHHHHHhc
Q 039162 139 KVDKGWNWFIALSALDYPLVTQDDLAHAFSS 169 (406)
Q Consensus 139 ~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~ 169 (406)
.+.| ++++...|.|+.+.+.|.+.+..
T Consensus 94 ---~~~d-~vlv~~~D~P~i~~~~i~~li~~ 120 (227)
T PRK00155 94 ---PDDD-WVLVHDAARPFLTPDDIDRLIEA 120 (227)
T ss_pred ---CCCC-EEEEccCccCCCCHHHHHHHHHH
Confidence 2356 57888899999999999877654
No 82
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=20.47 E-value=4.6e+02 Score=23.26 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=50.0
Q ss_pred CceEEEEEecCCC--HHHHHHHHHHHc----------------------CCCCEEEEEEcCC---CChHHHHHHHHHhcc
Q 039162 48 PAFAYYISGGTGD--KDRIFRLLLALY----------------------HPRNRYLLHLAAD---ASDDERLKLAAAVRS 100 (406)
Q Consensus 48 ~kiAylIl~~~~d--~~~l~rLl~aLy----------------------~p~n~y~IHvD~k---a~~~~~~~l~~~v~~ 100 (406)
..+|||+.|..+. ......+++.|+ ||+ .+++.-+.+ -..++..++...+..
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~i~i~~ir~i~~~~~~ 96 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKKKSIKIDQIREIIEFLSL 96 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEecccccchhhHHHHHHHHHHHHH
Confidence 3488888874443 344555555554 443 233333333 134444455555543
Q ss_pred ccccccccceEEcCCCceeecCcchHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 039162 101 VPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSAL 153 (406)
Q Consensus 101 ~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~ 153 (406)
.+.. ....|.++.+.+ .|-....+++-..|+..++.-+||+++.+
T Consensus 97 ~~~~-~~~KviiI~~ad-------~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 97 SPSE-GKYKVIIIDEAD-------KLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp S-TT-SSSEEEEEETGG-------GS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred HHhc-CCceEEEeehHh-------hhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 3322 234555554433 55555556666677777778888888743
No 83
>PRK11024 colicin uptake protein TolR; Provisional
Probab=20.15 E-value=5.8e+02 Score=22.14 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=28.2
Q ss_pred HHHHHHHHHHc--CCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEc
Q 039162 62 DRIFRLLLALY--HPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVV 113 (406)
Q Consensus 62 ~~l~rLl~aLy--~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv 113 (406)
+.+...++.+. +|+-.++|..|++++-+...++...++.. .+.+|.++
T Consensus 88 ~~L~~~l~~~~~~~~~~~V~i~aD~~~~~~~vv~vmd~~k~a----G~~~v~l~ 137 (141)
T PRK11024 88 EQVVAEAKSRFKANPKTVFLIGGAKDVPYDEIIKALNLLHSA----GVKSVGLM 137 (141)
T ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHc----CCCeEEEE
Confidence 44544444442 57777888888888877655555544432 24456554
Done!