Query 039162
Match_columns 406
No_of_seqs 208 out of 860
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 5.5E-64 1.9E-68 510.0 24.3 281 45-352 81-389 (391)
2 4hg6_A Cellulose synthase subu 76.3 51 0.0017 35.7 15.7 114 45-178 137-273 (802)
3 3bcv_A Putative glycosyltransf 73.7 15 0.00051 32.3 9.0 93 47-157 4-98 (240)
4 1qg8_A Protein (spore coat pol 72.3 23 0.00078 31.4 10.1 107 48-168 1-114 (255)
5 4fix_A UDP-galactofuranosyl tr 68.7 16 0.00056 38.7 9.4 111 45-168 177-294 (657)
6 2z86_A Chondroitin synthase; G 61.0 56 0.0019 33.6 11.5 93 48-157 93-188 (625)
7 1ezi_A CMP-N-acetylneuraminic 58.5 50 0.0017 29.0 9.4 90 62-169 30-121 (228)
8 2d7i_A Polypeptide N-acetylgal 55.6 33 0.0011 35.4 8.6 107 46-169 110-223 (570)
9 2z86_A Chondroitin synthase; G 53.9 66 0.0022 33.0 10.6 97 47-164 374-473 (625)
10 1xhb_A Polypeptide N-acetylgal 52.3 69 0.0024 31.6 10.2 106 46-168 27-140 (472)
11 2ffu_A Ppgalnact-2, polypeptid 46.6 64 0.0022 32.3 9.0 92 46-157 64-160 (501)
12 1qwj_A Cytidine monophospho-N- 36.3 1.5E+02 0.0051 26.1 8.9 25 143-168 94-118 (229)
13 2fy7_A Beta-1,4-galactosyltran 26.3 3E+02 0.01 25.5 9.5 25 47-72 64-88 (287)
14 3ckj_A Putative uncharacterize 25.4 3.5E+02 0.012 25.1 9.9 116 46-177 46-166 (329)
15 1iio_A Conserved hypothetical 24.1 27 0.00094 27.3 1.3 18 150-167 20-37 (84)
16 3f1y_A Mannosyl-3-phosphoglyce 23.9 2E+02 0.0069 28.0 8.0 112 47-178 93-215 (387)
17 3ku3_A Hemagglutinin HA1 chain 21.4 44 0.0015 32.4 2.4 44 141-185 75-124 (327)
18 2ehh_A DHDPS, dihydrodipicolin 21.1 3.9E+02 0.013 24.8 9.2 98 60-170 19-121 (294)
19 3l21_A DHDPS, dihydrodipicolin 20.2 5E+02 0.017 24.2 9.7 99 59-170 33-136 (304)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=5.5e-64 Score=510.02 Aligned_cols=281 Identities=21% Similarity=0.359 Sum_probs=239.7
Q ss_pred CCCCceEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcc
Q 039162 45 HYPPAFAYYISGGTGDKDRIFRLLLALYHPRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGS 124 (406)
Q Consensus 45 ~~p~kiAylIl~~~~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 124 (406)
+.+|||||+|++ |+|+++++||++++|||+|.||||+|+|++..++..+.+ +..+++||+|++++..|.|||+
T Consensus 81 e~~~kiAflil~-h~d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~------~~~~f~NV~v~~~~~~v~WGg~ 153 (391)
T 2gak_A 81 EVGFPIAYSIVV-HHKIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQG------IASCFDNVFVASQLESVVYASW 153 (391)
T ss_dssp HHTSCEEEEEEE-CSCHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHH------HHHTCTTEEECSSCCCCCTTSH
T ss_pred ccCCCEEEEEEe-cCCHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHH------HHhcCCCEEEeccCcccccCCc
Confidence 345889999999 899999999999999999999999999999887776654 3457999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHHHHHhccCCCCceEeccCCCCCccce-eecceeeCCcceee
Q 039162 125 SNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQ-RIQPVIVDPGLYLA 203 (406)
Q Consensus 125 S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~~~~~~nFI~~~~~~~wk~~~-r~~~~~~d~g~y~~ 203 (406)
|||+|+|+||+.||+...+|+|||||||+||||+|+++|.++|+. ++|+|||++.++.+|++.+ ++++...|++++
T Consensus 154 S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~-~~~~nFIe~~~~~~~~~~R~~~~~~~~~~~l~-- 230 (391)
T 2gak_A 154 TRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKC-STGENNLETEKMPPNKEERWKKRYAVVDGKLT-- 230 (391)
T ss_dssp HHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHH-TTTCCBCCBEECCGGGSHHHHEEEEEETTEEE--
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHh-cCCCceeeccCCCcccccceEeeeecccccee--
Confidence 999999999999999877999999999999999999999999976 4799999999888887542 222334455432
Q ss_pred ccccccccccCCCCCCCceeeeccCCCCCCcCcceeEEecHHHHHHhhhccCCchHHHHHHhcCCCCCcchhhhhhhhcC
Q 039162 204 RKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNA 283 (406)
Q Consensus 204 ~~~~i~~~~~kR~~P~~~~l~~G~~~~~~~~~gSqW~~LsR~fveyii~~~d~~p~~ll~~f~~t~~pDE~yFqTvl~Ns 283 (406)
.+..++|.+|+++++++| ||||+|||+||+||+. |+.++++++||+++++|||+||||++.|.
T Consensus 231 -----~~~~~k~~~P~~~~~~~G----------SqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~ 293 (391)
T 2gak_A 231 -----NTGIVKAPPPLKTPLFSG----------SAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIP 293 (391)
T ss_dssp -----EEEEECCCCSCSSCCEEC----------CSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTST
T ss_pred -----eecccccCCccccceecc----------cceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhcc
Confidence 224567888999999999 9999999999999998 77788899999999999999999998774
Q ss_pred ---------CCCCcccccCceeEEecCCCCC------CCCc----------cCCHHHHHHHHccCCeEEecCCC--ChHH
Q 039162 284 ---------PEFKNTTINSDLRYMIWDNPPK------MEPH----------FLNVSDYDQMVQSGVVFARQFQK--DDPA 336 (406)
Q Consensus 284 ---------~~f~~t~vn~~LRyi~W~~~~~------~~P~----------~l~~~D~~~l~~S~~lFARKF~~--d~~l 336 (406)
..|+++++|+++|||+|+++.+ .||. +|+.+|+++|.+|+++|||||++ |++|
T Consensus 294 ~~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~~lFARKF~~~~d~~~ 373 (391)
T 2gak_A 294 EVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFA 373 (391)
T ss_dssp TSTTCCCSSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSCCSEEECCCTTTCHHH
T ss_pred CCCCccccccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCCCceEEccCCccCHHH
Confidence 2345566799999999985221 2443 89999999999999999999997 6899
Q ss_pred HHHHHHHHhccCCCCC
Q 039162 337 LNMIDEKILKRGHNRA 352 (406)
Q Consensus 337 Ld~Id~~ll~r~~~~~ 352 (406)
|++||+.+.+|+..+.
T Consensus 374 l~~l~~~l~~r~~~~~ 389 (391)
T 2gak_A 374 IQCLDEHLRRKALENL 389 (391)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhhhhhccc
Confidence 9999999999876543
No 2
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=76.31 E-value=51 Score=35.66 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCCCceEEEEEecCCCHH-HHHHHHHHHc---CCCC-EEEEEEcCCCChHH---------------HHHHHHHhcccccc
Q 039162 45 HYPPAFAYYISGGTGDKD-RIFRLLLALY---HPRN-RYLLHLAADASDDE---------------RLKLAAAVRSVPAV 104 (406)
Q Consensus 45 ~~p~kiAylIl~~~~d~~-~l~rLl~aLy---~p~n-~y~IHvD~ka~~~~---------------~~~l~~~v~~~~~~ 104 (406)
+..|++..+|-+ +++.+ .+.+.++++. .|+. .-+|=+|..+++.. +..++++.+
T Consensus 137 ~~~P~VSViIPt-yNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~----- 210 (802)
T 4hg6_A 137 EELPTVDILVPS-YNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCR----- 210 (802)
T ss_dssp TTCCCEEEEEEC-TTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHH-----
T ss_pred cCCCcEEEEEEE-CCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHH-----
Confidence 344689999998 66654 4488888883 3442 33455666554432 222332211
Q ss_pred ccccceEEcCCCceeecCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHH---HHHhccCCCCceEe
Q 039162 105 RAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLA---HAFSSVRRDLNFID 178 (406)
Q Consensus 105 ~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~---~~f~~~~~~~nFI~ 178 (406)
..++.++.... +++|-. .| +..+++. .+-||++.+.+.|.| +.+.+. ..|.+ +.+..++.
T Consensus 211 --~~~v~~i~~~~--~~~GKa--~a----lN~gl~~-a~gd~Il~lDaD~~~--~pd~L~~lv~~~~~-dp~v~~V~ 273 (802)
T 4hg6_A 211 --ELGVVYSTRER--NEHAKA--GN----MSAALER-LKGELVVVFDADHVP--SRDFLARTVGYFVE-DPDLFLVQ 273 (802)
T ss_dssp --HHTCEEEECSS--CCSHHH--HH----HHHHHHH-CCCSEEEECCTTEEE--CTTHHHHHHHHHHH-SSSCCEEE
T ss_pred --hcCcEEEEecC--CCCcch--HH----HHHHHHh-cCCCEEEEECCCCCc--ChHHHHHHHHHHhc-CCCeEEEe
Confidence 23455553221 233322 22 2334443 356999999999988 444443 34422 33444554
No 3
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=73.67 E-value=15 Score=32.28 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=58.1
Q ss_pred CCceEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcc
Q 039162 47 PPAFAYYISGGTGDKDRIFRLLLALYHP--RNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGS 124 (406)
Q Consensus 47 p~kiAylIl~~~~d~~~l~rLl~aLy~p--~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 124 (406)
.|++..+|.+ ++..+.|.+.|+.|... .+.=+|=||-.+++...+.++++. ...++|.++... -.|.
T Consensus 4 ~p~vsViIp~-yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~------~~~~~i~~i~~~----n~G~ 72 (240)
T 3bcv_A 4 IPKVSVIVPI-YNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYA------AQYPNIKVIHKK----NAGL 72 (240)
T ss_dssp CCSEEEEEEE-SSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHH------HHCSSEEEEECC----CCCH
T ss_pred CCcEEEEEec-CCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHH------hhCCCEEEEECC----CCCh
Confidence 3678888887 88889999999998531 133355577666655444454432 245788888532 2332
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEecCCCccc
Q 039162 125 SNVAAVLRAAAILLKVDKGWNWFIALSALDYPL 157 (406)
Q Consensus 125 S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPL 157 (406)
..|--.+++.+ .-+|++.|.+.|++-
T Consensus 73 --~~a~N~g~~~a-----~g~~i~~lD~Dd~~~ 98 (240)
T 3bcv_A 73 --GMACNSGLDVA-----TGEYVAFCDSDDYVD 98 (240)
T ss_dssp --HHHHHHHHHHC-----CSSEEEECCTTCCCC
T ss_pred --HHHHHHHHHHc-----CCCEEEEECCCCcCC
Confidence 23333333332 349999999999863
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=72.29 E-value=23 Score=31.41 Aligned_cols=107 Identities=6% Similarity=0.023 Sum_probs=62.6
Q ss_pred CceEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCcee---ec
Q 039162 48 PAFAYYISGGTGDKDRIFRLLLALYH---PRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRV---NF 121 (406)
Q Consensus 48 ~kiAylIl~~~~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V---~W 121 (406)
|++..+|.+ ++..+.|.++|+.|.. | +.=+|=+|-.+++.....++++ ...++|.++.....- .+
T Consensus 1 p~vSViIp~-yn~~~~l~~~l~Sl~~q~~~-~~eiivvDd~S~d~t~~~~~~~-------~~~~~i~~i~~~~~~~~~~~ 71 (255)
T 1qg8_A 1 PKVSVIMTS-YNKSDYVAKSISSILSQTFS-DFELFIMDDNSNEETLNVIRPF-------LNDNRVRFYQSDISGVKERT 71 (255)
T ss_dssp CCEEEEEEE-SSCTTTHHHHHHHHHTCSCC-CEEEEEEECSCCHHHHHHHGGG-------GGSTTEEEEECCCCSHHHHH
T ss_pred CeEEEEEEc-CCCHHHHHHHHHHHHhccCC-ceEEEEEECCCCchHHHHHHHH-------hhcCCEEEEecccccccccc
Confidence 568888887 8888999999999853 3 3335667776766544433321 125688887543100 00
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccC-hhHHHHHHh
Q 039162 122 VGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVT-QDDLAHAFS 168 (406)
Q Consensus 122 gg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt-~~~i~~~f~ 168 (406)
...+...|--.+++.+ +-+|++.|.+.|++-.. .+.+...+.
T Consensus 72 ~n~G~~~a~N~gi~~a-----~g~~i~~lD~Dd~~~~~~l~~~~~~~~ 114 (255)
T 1qg8_A 72 EKTRYAALINQAIEMA-----EGEYITYATDDNIYMPDRLLKMVRELD 114 (255)
T ss_dssp SSCHHHHHHHHHHHHC-----CCSEEEEEETTEEECTTHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHc-----CCCEEEEeCCCCccChHHHHHHHHHHH
Confidence 1233444444444332 45899999999997432 233444443
No 5
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=68.70 E-value=16 Score=38.74 Aligned_cols=111 Identities=12% Similarity=-0.029 Sum_probs=68.3
Q ss_pred CCCCceEEEEEecCCCHHHHHHHHHHHcCC-----CCEEEEEEcCCCChH-HHHHHHHHhccccccccccceEEcCCCce
Q 039162 45 HYPPAFAYYISGGTGDKDRIFRLLLALYHP-----RNRYLLHLAADASDD-ERLKLAAAVRSVPAVRAFGNVDVVGKPDR 118 (406)
Q Consensus 45 ~~p~kiAylIl~~~~d~~~l~rLl~aLy~p-----~n~y~IHvD~ka~~~-~~~~l~~~v~~~~~~~~~~NV~vv~~r~~ 118 (406)
+.+|+++.+|.+ ++..+.+.+.|.+|..- .+.=+|=||-.+++. ....+.+.++ ...++|.++...
T Consensus 177 ~~~pkVSVVIpt-YN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~-----~~~~~I~vI~~~-- 248 (657)
T 4fix_A 177 PGTANIAVGIPT-FNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAA-----RLGSRLSIHDQP-- 248 (657)
T ss_dssp CSCCCEEEECCB-SSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHH-----HHGGGEEEEECC--
T ss_pred CCCCeEEEEEEe-cCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHH-----hcCCCEEEEECC--
Confidence 345789999986 99999999999999752 233478888877542 1111222111 134689988643
Q ss_pred eecCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccC-hhHHHHHHh
Q 039162 119 VNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVT-QDDLAHAFS 168 (406)
Q Consensus 119 V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt-~~~i~~~f~ 168 (406)
+-|+ -.|--.+++.+... .+.||+++|.+.+.+-.. .+.+.+++.
T Consensus 249 -N~G~---a~a~N~Gl~~A~g~-~~~dyIlfLD~D~~~~pd~L~~ll~~l~ 294 (657)
T 4fix_A 249 -NLGG---SGGYSRVMYEALKN-TDCQQILFMDDDIRLEPDSILRVLAMHR 294 (657)
T ss_dssp -CCHH---HHHHHHHHHHHHHH-CCCSEEEEECSSEEECTHHHHHHHHHHH
T ss_pred -CCCH---HHHHHHHHHHHHhc-CCCCEEEEECCCCccChhHHHHHHHHHH
Confidence 2222 22444566666664 368999999988876522 334444443
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=60.98 E-value=56 Score=33.60 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=56.9
Q ss_pred CceEEEEEecCCCHHHHHHHHHHHcCC---CCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcc
Q 039162 48 PAFAYYISGGTGDKDRIFRLLLALYHP---RNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGS 124 (406)
Q Consensus 48 ~kiAylIl~~~~d~~~l~rLl~aLy~p---~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 124 (406)
|++..+|.+ ++..+.+.++|.+|..- .+.=+|=||-.+++.....++++ ....+|.++... -.|.
T Consensus 93 p~vsviIp~-~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~-------~~~~~i~~i~~~----~~~~ 160 (625)
T 2z86_A 93 DGLSIVIPT-YNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREF-------ESLLNIKYVRQK----DYGY 160 (625)
T ss_dssp CCEEEEEEE-SSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTT-------TTTSCEEEEEEC----CCSC
T ss_pred CcEEEEEec-CCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHh-------hhcCCeEEEEeC----CCCc
Confidence 689999987 88899999999999532 23334555655554433333321 123567776422 2233
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEecCCCccc
Q 039162 125 SNVAAVLRAAAILLKVDKGWNWFIALSALDYPL 157 (406)
Q Consensus 125 S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPL 157 (406)
+...|--.+++.+ +-||++.|.+.+.+-
T Consensus 161 g~~~a~N~g~~~a-----~g~~v~~lD~D~~~~ 188 (625)
T 2z86_A 161 QLCAVRNLGLRAA-----KYNYVAILDCDMAPN 188 (625)
T ss_dssp CHHHHHHHHHHHC-----CSSEEEEECTTEEEC
T ss_pred chhHHHHHHHHhC-----CcCEEEEECCCCCCC
Confidence 4444444444432 468999999999983
No 7
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=58.50 E-value=50 Score=29.04 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcC-C-CCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHHHHHHHh
Q 039162 62 DRIFRLLLALYH-P-RNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAAAILLK 139 (406)
Q Consensus 62 ~~l~rLl~aLy~-p-~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~ 139 (406)
..+.+.++++.. + -..++|-.+. . + ++++++ .+ ++.++........++.+...+..++++.+ .
T Consensus 30 pll~~~l~~~~~~~~~~~ivvv~~~---~-~---i~~~~~------~~-~~~~~~~~~~~~~~~~g~~~sv~~~l~~~-~ 94 (228)
T 1ezi_A 30 SLLGHTINAAISSKCFDRIIVSTDG---G-L---IAEEAK------NF-GVEVVLRPAELASDTASSISGVIHALETI-G 94 (228)
T ss_dssp EHHHHHHHHHHHHCCCSEEEEEESC---H-H---HHHHHH------HT-TCEEEECCC------CHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHhCCCCCEEEEECCC---H-H---HHHHHH------Hc-CCEEEeCchHHcCCCCChHHHHHHHHHHh-C
Confidence 456777777652 3 2466666652 1 1 222221 12 23333333334456777888877877776 2
Q ss_pred cCCCCcEEEEecCCCccccChhHHHHHHhc
Q 039162 140 VDKGWNWFIALSALDYPLVTQDDLAHAFSS 169 (406)
Q Consensus 140 ~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~ 169 (406)
.+.|+++.+ ..|.|+.+.+.|.+.+..
T Consensus 95 --~~~d~vlv~-~~D~P~~~~~~i~~l~~~ 121 (228)
T 1ezi_A 95 --SNSGTVTLL-QPTSPLRTGAHIREAFSL 121 (228)
T ss_dssp --CCSEEEEEC-CTTCTTCCHHHHHHHHTT
T ss_pred --CCCCEEEEE-cCCCCcCCHHHHHHHHHH
Confidence 345776555 569999999999877644
No 8
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=55.62 E-value=33 Score=35.41 Aligned_cols=107 Identities=10% Similarity=0.099 Sum_probs=66.7
Q ss_pred CCCceEEEEEecCCCH-HHHHHHHHHHc--CCCCE--EEEEEcCCCChHH-HHHHHHHhccccccccccceEEcCCCcee
Q 039162 46 YPPAFAYYISGGTGDK-DRIFRLLLALY--HPRNR--YLLHLAADASDDE-RLKLAAAVRSVPAVRAFGNVDVVGKPDRV 119 (406)
Q Consensus 46 ~p~kiAylIl~~~~d~-~~l~rLl~aLy--~p~n~--y~IHvD~ka~~~~-~~~l~~~v~~~~~~~~~~NV~vv~~r~~V 119 (406)
..|++..+|.+ ++.. +.|.+.|.++. .+.+. =+|=||-.|++.. ...++++++ .+++|.++....
T Consensus 110 ~~P~vSVIIp~-yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~------~~~~v~vi~~~~-- 180 (570)
T 2d7i_A 110 TLPNTSIIIPF-HNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMA------LFPSVRILRTKK-- 180 (570)
T ss_dssp SCCCEEEEEEE-SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHT------TSTTEEEEECSS--
T ss_pred CCCCeEEEEEE-CCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHH------hCCeEEEEECCC--
Confidence 34789999987 7775 89999998884 22231 3566777666554 555555432 357898885322
Q ss_pred ecCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccC-hhHHHHHHhc
Q 039162 120 NFVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVT-QDDLAHAFSS 169 (406)
Q Consensus 120 ~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt-~~~i~~~f~~ 169 (406)
......|-..+++.+ .-||++.|.+.|.+-.. .+.+++.+..
T Consensus 181 ---n~G~~~A~N~G~~~A-----~gd~i~fLD~D~~~~p~~L~~ll~~l~~ 223 (570)
T 2d7i_A 181 ---REGLIRTRMLGASVA-----TGDVITFLDSHCEANVNWLPPLLDRIAR 223 (570)
T ss_dssp ---CCCHHHHHHHHHHHC-----CSSEEEECCSSEEECTTCSHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHhc-----CCCEEEEEcCCccccccHHHHHHHHHHh
Confidence 133555656655553 34899999999887322 2345555543
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=53.88 E-value=66 Score=33.05 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=58.7
Q ss_pred CCceEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecCc
Q 039162 47 PPAFAYYISGGTGDKDRIFRLLLALYH---PRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVG 123 (406)
Q Consensus 47 p~kiAylIl~~~~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg 123 (406)
.|+++.+|.+ ++..+.+.+.|+.+.. ++-. +|=+|-.+++.....++++. ...++|.++... ..|
T Consensus 374 ~~~vsiii~~-yn~~~~l~~~l~s~~~q~~~~~e-iivvdd~S~d~t~~~~~~~~------~~~~~i~~~~~~----n~G 441 (625)
T 2z86_A 374 VPLVSIYIPA-YNCSKYIVRCVESALNQTITDLE-VCICDDGSTDDTLRILQEHY------ANHPRVRFISQK----NKG 441 (625)
T ss_dssp SCSEEEEEEE-SSCTTTHHHHHHHHHSSSCCSEE-EEEEEESCSSSHHHHHHHHH------TTCTTEEEEEEC----CCC
T ss_pred CCeEEEEEeC-CCCHHHHHHHHHHHHhCcCCCeE-EEEEECcCChhHHHHHHHHH------hhCCcEEEEeCC----CCC
Confidence 4688988887 8888899999998852 3334 45556555554444444422 235688887422 233
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccChhHHH
Q 039162 124 SSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVTQDDLA 164 (406)
Q Consensus 124 ~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~ 164 (406)
...|.-.+++.+ .-||++.|.+.|++ ..+.|.
T Consensus 442 --~~~a~n~g~~~a-----~g~~i~~ld~D~~~--~~~~l~ 473 (625)
T 2z86_A 442 --IGSASNTAVRLC-----RGFYIGQLDSDDFL--EPDAVE 473 (625)
T ss_dssp --HHHHHHHHHHHC-----CSSEEEECCTTCEE--CTTHHH
T ss_pred --HHHHHHHHHHhc-----CCCEEEEECCCccc--ChhHHH
Confidence 233333333332 34899999999986 444443
No 10
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=52.27 E-value=69 Score=31.62 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=64.3
Q ss_pred CCCceEEEEEecCCCH-HHHHHHHHHHcC--CCC--EEEEEEcCCCChH-HHHHHHHHhcccccccccc-ceEEcCCCce
Q 039162 46 YPPAFAYYISGGTGDK-DRIFRLLLALYH--PRN--RYLLHLAADASDD-ERLKLAAAVRSVPAVRAFG-NVDVVGKPDR 118 (406)
Q Consensus 46 ~p~kiAylIl~~~~d~-~~l~rLl~aLy~--p~n--~y~IHvD~ka~~~-~~~~l~~~v~~~~~~~~~~-NV~vv~~r~~ 118 (406)
..|++..+|.+ ++.. +.|.++|++|.. +.+ .=+|=||-.+++. ....++++++ .++ +|.++.....
T Consensus 27 ~~p~vSVIIp~-yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~------~~~~~v~vi~~~~n 99 (472)
T 1xhb_A 27 NLPTTSVVIVF-HNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVK------KLKVPVHVIRMEQR 99 (472)
T ss_dssp CCCCEEEEEEE-SSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHH------SSSSCEEEEECSSC
T ss_pred CCCCeEEEEEe-CCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHH------HCCCcEEEEECCCC
Confidence 35789999987 7777 999999999852 223 2356677766653 3444554332 356 7888853321
Q ss_pred eecCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccccC-hhHHHHHHh
Q 039162 119 VNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPLVT-QDDLAHAFS 168 (406)
Q Consensus 119 V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPLkt-~~~i~~~f~ 168 (406)
.....|--.+++.+ .-||++.|.+.|.+-.. .+.+.+.+.
T Consensus 100 -----~G~~~a~N~g~~~A-----~gd~i~flD~D~~~~p~~L~~ll~~~~ 140 (472)
T 1xhb_A 100 -----SGLIRARLKGAAVS-----RGQVITFLDAHCECTAGWLEPLLARIK 140 (472)
T ss_dssp -----CCHHHHHHHHHHHC-----CSSEEEEEESSEEECTTCHHHHHHHHH
T ss_pred -----CChHHHHHHHHHhc-----cCCeEEEECCCeEeCccHHHHHHHHHH
Confidence 12444545544443 35899999998885432 344445443
No 11
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=46.59 E-value=64 Score=32.28 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=57.2
Q ss_pred CCCceEEEEEecCCCHH-HHHHHHHHHc--CCCC--EEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceee
Q 039162 46 YPPAFAYYISGGTGDKD-RIFRLLLALY--HPRN--RYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVN 120 (406)
Q Consensus 46 ~p~kiAylIl~~~~d~~-~l~rLl~aLy--~p~n--~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~ 120 (406)
..|++..+|.+ ++..+ .|.+.|.++. .+.+ .=+|=||-.|++....++ ....++|.++....
T Consensus 64 ~~p~vSVIIp~-yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------~~~~~~v~vi~~~~--- 130 (501)
T 2ffu_A 64 DLPATSVVITF-HNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------LGKIEKVRVLRNDR--- 130 (501)
T ss_dssp SCCCEEEEEEE-SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG---------GGGBTTEEEEECSS---
T ss_pred CCCCEEEEEEe-CcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH---------HhcCCCEEEEECCC---
Confidence 35689988887 77766 8888888874 2223 235667766655432221 23567898885322
Q ss_pred cCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccc
Q 039162 121 FVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPL 157 (406)
Q Consensus 121 Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPL 157 (406)
......|-..+++.+ .-||++.|.+.|.+-
T Consensus 131 --n~G~~~A~N~G~~~A-----~gd~i~flD~D~~~~ 160 (501)
T 2ffu_A 131 --REGLMRSRVRGADAA-----QAKVLTFLDSHCECN 160 (501)
T ss_dssp --CCHHHHHHHHHHHHC-----CSSEEEECCSSEEEC
T ss_pred --CcCHHHHHHHHHHhc-----CCCEEEEECCCcccC
Confidence 223555555555543 358999999888763
No 12
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=36.31 E-value=1.5e+02 Score=26.05 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=18.7
Q ss_pred CCcEEEEecCCCccccChhHHHHHHh
Q 039162 143 GWNWFIALSALDYPLVTQDDLAHAFS 168 (406)
Q Consensus 143 ~wd~fi~LSg~DyPLkt~~~i~~~f~ 168 (406)
+.|+++.+. .|.|+.+.+.|.+.+.
T Consensus 94 ~~d~vlv~~-~D~Pli~~~~i~~l~~ 118 (229)
T 1qwj_A 94 EVDIVGNIQ-ATSPCLHPTDLQKVAE 118 (229)
T ss_dssp TCSEEEEEC-TTCTTCCHHHHHHHHH
T ss_pred CCCEEEEec-CCCCcCCHHHHHHHHH
Confidence 467777775 5999998888866554
No 13
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=26.35 E-value=3e+02 Score=25.53 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=21.8
Q ss_pred CCceEEEEEecCCCHHHHHHHHHHHc
Q 039162 47 PPAFAYYISGGTGDKDRIFRLLLALY 72 (406)
Q Consensus 47 p~kiAylIl~~~~d~~~l~rLl~aLy 72 (406)
.++++.+|.+ ++..+.|.++|.+|.
T Consensus 64 ~~~VSIIIP~-yN~~~~L~~~L~sl~ 88 (287)
T 2fy7_A 64 PHKVAIIIPF-RNRQEHLKYWLYYLH 88 (287)
T ss_dssp SCEEEEEEEE-SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEee-CCCHHHHHHHHHHHH
Confidence 4789999987 999999999999886
No 14
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=25.45 E-value=3.5e+02 Score=25.06 Aligned_cols=116 Identities=12% Similarity=0.059 Sum_probs=62.4
Q ss_pred CCCceEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCceeecC
Q 039162 46 YPPAFAYYISGGTGDKDRIFRLLLALYH---PRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFV 122 (406)
Q Consensus 46 ~p~kiAylIl~~~~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wg 122 (406)
..|++..+|-+ ++..+.+.++|..|.. +...=+|=||-.|++.....++++.. ....++.++. .. -.-.
T Consensus 46 ~~~~vSViIp~-yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~-----~~~~~~~~~~-~~-~~n~ 117 (329)
T 3ckj_A 46 AGRTISVVLPA-LDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGA-----RVVSREQALP-EV-PIRP 117 (329)
T ss_dssp TTCCEEEEEEE-SSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTC-----EEEEHHHHCT-TS-CCCC
T ss_pred cCCcEEEEEee-CCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhh-----hhccceeeec-cC-CCCC
Confidence 35789999987 8888889999998853 43223445777676654443433110 0012222221 01 1122
Q ss_pred cchHHHHHHHHHHHHHhcCCCCcEEEEecCCCccc--cChhHHHHHHhccCCCCceE
Q 039162 123 GSSNVAAVLRAAAILLKVDKGWNWFIALSALDYPL--VTQDDLAHAFSSVRRDLNFI 177 (406)
Q Consensus 123 g~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyPL--kt~~~i~~~f~~~~~~~nFI 177 (406)
| ...|.-.+++.+ .-||++.|.+.|.++ -....+.+.+.+ +.+..++
T Consensus 118 G--~~~a~n~g~~~a-----~gd~i~~lD~D~~~~~p~~l~~l~~~l~~-~~~~~~v 166 (329)
T 3ckj_A 118 G--KGEALWRSLAAS-----RGDIVVFVDSDLINPHPMFVPWLVGPLLT-GDGVHLV 166 (329)
T ss_dssp S--HHHHHHHHHHHC-----CCSEEEECCTTEESCCTTHHHHHHHHHHS-CSSCCEE
T ss_pred C--HHHHHHHHHHhC-----CCCEEEEECCCCCCcChHHHHHHHHHHHh-CCCccEE
Confidence 3 333444444332 348999999999833 234556665433 2344444
No 15
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=24.14 E-value=27 Score=27.27 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=15.5
Q ss_pred ecCCCccccChhHHHHHH
Q 039162 150 LSALDYPLVTQDDLAHAF 167 (406)
Q Consensus 150 LSg~DyPLkt~~~i~~~f 167 (406)
+.|.+||++|+.||...|
T Consensus 20 ~~~a~FPI~s~~EL~~Al 37 (84)
T 1iio_A 20 LAGADFPINSPEELMAAL 37 (84)
T ss_dssp HTTSSSTTBHHHHHHHHC
T ss_pred HcCCCCCCCCHHHHHHhC
Confidence 357799999999999877
No 16
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=23.93 E-value=2e+02 Score=28.02 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=61.1
Q ss_pred CCceEEEEEecCCCHHHHHHHHHHHcC-----CCCEEEEEEcCCCChHHHHHHHHHhccccccccccceEEcCCCce---
Q 039162 47 PPAFAYYISGGTGDKDRIFRLLLALYH-----PRNRYLLHLAADASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDR--- 118 (406)
Q Consensus 47 p~kiAylIl~~~~d~~~l~rLl~aLy~-----p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~--- 118 (406)
+|++..+|-+ ++..+.+.++|..|.. +.+.=+|=||-.|++.-...++++ . ..++..+..
T Consensus 93 ~p~vSVVIP~-yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~~i~~~~----------~-~~v~~~~~~~i~ 160 (387)
T 3f1y_A 93 GLTVSAVLPS-RNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASH----------G-AEVYSENELMSG 160 (387)
T ss_dssp TCCEEEEEEE-SSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHT----------T-CEEEEGGGTTGG
T ss_pred CCeEEEEEEc-CCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCccHHHHHHHh----------C-chhcccceeEec
Confidence 5789999987 8888888888888732 333445667766765544333321 1 112211110
Q ss_pred -eecCcchHHHHHHHHHHHHHhcCCCCcEEEEecCCCcc--ccChhHHHHHHhccCCCCceEe
Q 039162 119 -VNFVGSSNVAAVLRAAAILLKVDKGWNWFIALSALDYP--LVTQDDLAHAFSSVRRDLNFID 178 (406)
Q Consensus 119 -V~Wgg~S~V~AtL~~~~~lL~~~~~wd~fi~LSg~DyP--Lkt~~~i~~~f~~~~~~~nFI~ 178 (406)
-...| .-.|... .++. ..-||++.|.+.+.. -.....+...+.. +.+..++-
T Consensus 161 ~~~n~G--~g~A~n~----G~~~-A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~-~p~~d~v~ 215 (387)
T 3f1y_A 161 YGDAHG--KGDAMWR----ALSV-TRGDLVLYIDADTRDFRPQLAYGVLGPVLE-VPGVRFVK 215 (387)
T ss_dssp GCSCCS--HHHHHHH----HTTT-CCSSEEEECCTTCSSCCTHHHHTTHHHHHH-STTCCEEE
T ss_pred CCccCC--HHHHHHH----HHHh-cCCCEEEEEcCCCCcCCHHHHHHHHHHHHH-CCCceEEE
Confidence 11223 3334334 3333 356999999998873 3334555555533 23455554
No 17
>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} SCOP: b.19.1.2 PDB: 3qqb_A* 3qqe_A* 3qqo_A* 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* 3qqi_A*
Probab=21.40 E-value=44 Score=32.42 Aligned_cols=44 Identities=23% Similarity=0.516 Sum_probs=32.0
Q ss_pred CCCCcEEEE----ecCCCcc--ccChhHHHHHHhccCCCCceEeccCCCCC
Q 039162 141 DKGWNWFIA----LSALDYP--LVTQDDLAHAFSSVRRDLNFIDHTSDLGW 185 (406)
Q Consensus 141 ~~~wd~fi~----LSg~DyP--Lkt~~~i~~~f~~~~~~~nFI~~~~~~~w 185 (406)
...|||+|= ..|.||| +...++|.+.|++. ++.++|+..+...|
T Consensus 75 ~~~WsyIVEr~~a~ng~CYPG~~~d~eeLR~l~ss~-~~~erieifp~~~W 124 (327)
T 3ku3_A 75 VPEWSYIMEKENPRDGLCYPGSFNDYEELKHLLSSV-KHFEKVKILPKDRW 124 (327)
T ss_dssp CCCCSCEEECSSCSBSCSSCEEETTHHHHHHHHTTE-EEEEEECCSCGGGC
T ss_pred CceeEEEEEcCCCCCCcccCCccCCHHHHHHHHhcc-CCceeEEecCCCcc
Confidence 378999998 4567999 57778898888764 56788876443334
No 18
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=21.15 E-value=3.9e+02 Score=24.77 Aligned_cols=98 Identities=17% Similarity=0.130 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHcCCCCEEEEEEcCC-----CChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHHH
Q 039162 60 DKDRIFRLLLALYHPRNRYLLHLAAD-----ASDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRAA 134 (406)
Q Consensus 60 d~~~l~rLl~aLy~p~n~y~IHvD~k-----a~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~ 134 (406)
|.+.++++++.+-..+.+-++=.-.. -+.+||.++.+.+... .-++|-|+ +.=|+.| .+.++...
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~----~~grvpvi-----aGvg~~~-t~~ai~la 88 (294)
T 2ehh_A 19 DYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKR----AAGRIKVI-----AGTGGNA-THEAVHLT 88 (294)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHH----HTTSSEEE-----EECCCSC-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHH----hCCCCcEE-----EecCCCC-HHHHHHHH
Confidence 78999999999876665544434322 2567888877654321 12344443 2223333 45567777
Q ss_pred HHHHhcCCCCcEEEEecCCCccccChhHHHHHHhcc
Q 039162 135 AILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSV 170 (406)
Q Consensus 135 ~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~~ 170 (406)
+.+-+. ..|-+..+...=++. |+++|.++|...
T Consensus 89 ~~A~~~--Gadavlv~~P~y~~~-s~~~l~~~f~~v 121 (294)
T 2ehh_A 89 AHAKEV--GADGALVVVPYYNKP-TQRGLYEHFKTV 121 (294)
T ss_dssp HHHHHT--TCSEEEEECCCSSCC-CHHHHHHHHHHH
T ss_pred HHHHhc--CCCEEEECCCCCCCC-CHHHHHHHHHHH
Confidence 777664 568888887765554 999999999764
No 19
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=20.20 E-value=5e+02 Score=24.24 Aligned_cols=99 Identities=19% Similarity=0.132 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcCCC-----ChHHHHHHHHHhccccccccccceEEcCCCceeecCcchHHHHHHHH
Q 039162 59 GDKDRIFRLLLALYHPRNRYLLHLAADA-----SDDERLKLAAAVRSVPAVRAFGNVDVVGKPDRVNFVGSSNVAAVLRA 133 (406)
Q Consensus 59 ~d~~~l~rLl~aLy~p~n~y~IHvD~ka-----~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~ 133 (406)
=|.+.++++++.+-..+.+-++=.-... +.+||.++.+.+... .-++|-|+ +.=|+.| .+-++..
T Consensus 33 iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~----~~grvpvi-----aGvg~~~-t~~ai~l 102 (304)
T 3l21_A 33 LDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEA----VGDRARVI-----AGAGTYD-TAHSIRL 102 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHH----HTTTSEEE-----EECCCSC-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHH----hCCCCeEE-----EeCCCCC-HHHHHHH
Confidence 3789999999998755655444443322 567888877655321 22445444 2223334 4566777
Q ss_pred HHHHHhcCCCCcEEEEecCCCccccChhHHHHHHhcc
Q 039162 134 AAILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSV 170 (406)
Q Consensus 134 ~~~lL~~~~~wd~fi~LSg~DyPLkt~~~i~~~f~~~ 170 (406)
.+.+-+. .-|.+..+...=++. |++++.++|...
T Consensus 103 a~~a~~~--Gadavlv~~P~y~~~-s~~~l~~~f~~v 136 (304)
T 3l21_A 103 AKACAAE--GAHGLLVVTPYYSKP-PQRGLQAHFTAV 136 (304)
T ss_dssp HHHHHHH--TCSEEEEECCCSSCC-CHHHHHHHHHHH
T ss_pred HHHHHHc--CCCEEEECCCCCCCC-CHHHHHHHHHHH
Confidence 7777665 468888888876765 999999999775
Done!